Citrus Sinensis ID: 038344

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
Protein Sequence
MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAKDMHLPANELAVTQTNSLTSHENNQKHEGKKDLKGTPWNLDDWLKEKRNAAMIVATGIATMGFQAGVNPPNSSRLDASSFVAHNTLGFLSSLSVILLLLFSLPINRTLFVWIVMIMMGVAIGEMAWVYAVSIDVIGETNSSDSTRSTIVTRVWIVGVFLGNSSYLMVPVIKFIIKSIRRSSHIQAQDGRDNEPPIASIV
Secondary Structure (PSIPRED)
ccccccHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccccEEcccccccHHHHHHHcccHHHHHHHHHcccccccccccHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHccHHHHHHHHHcccHHHcccccccccHHHHHHHccccEEEccccccHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHccccHEEEHHccccHHHHHHHHHcccEEEEccccccccHHHHHHHccccccHHHHHHHHHHccccccHcccccccccEEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
MTILQLAVAAALLGHEDFVNEIlcqkpelarksdsrkssALHIAsqkgkcsatdvdgrNALHLAAMEGHIDVLEELVrakpdaasaplksfletregsellnanddngmTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNavnangftAWDILAQSKRDIKYWEIGELLRRArgnsakdmhlpaNELAVTQtnsltshennqkhegkkdlkgtpwnldDWLKEKRNAAMIVATGIATmgfqagvnppnssrldassfvahntLGFLSSLSVILLLLFSLPINRTLFVWIVMIMMGVAIGEMAWVYAVSIDVigetnssdstrstIVTRVWIVGVFLGNSSYLMVPVIKFIIKSIrrsshiqaqdgrdneppiasiv
Flexible Loop (DISEMBL)
MTILQLAVAAALLGHEDFVNEILCQKPElarksdsrkssalhiasqkgkcsatdVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAKDMHLPANELAVTQTNSLTshennqkhegkkdlkgtpWNLDDWLKEKRNAAMIVATGIATMGFQAGVNPPNSSRLDASSFVAHNTLGFLSSLSVILLLLFSLPINRTLFVWIVMIMMGVAIGEMAWVYAVSIDVIgetnssdstrstiVTRVWIVGVFLGNSSYLMVPVIKFIIKSIRRSshiqaqdgrdneppiasiv
Low Complexity Region (SEG)
MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAKDMHLPANELAVTQTNSLTSHENNQKHEGKKDLKGTPWNLDDWLKEKRNAAMIVATGIATMGFQAGVNPPNSSRLDASSFVAHNTlgflsslsvillllfslPINRTLFVWIVMIMMGVAIGEMAWVYAVSIDVIGETNSSDSTRSTIVTRVWIVGVFLGNSSYLMVPVikfiiksirrsshiQAQDGRDNEPPIASIV
Disordered region (IsUnstruct)
**ILQLAVAAALLGHEDFVNEILCQ********************************RNALHLAAMEGHIDVLEELV***************************DDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRR*****************************************TPWNLDDWLKEKRNAAMIVATGIATMGFQAGV*********ASSFVAHNTLGFLSSLSVILLLLFSLPINRTLFVWIVMIMMGVAIGEMAWVYAVSIDVIGETN***STRSTIVTRVWIVGVFLGNSSYLMVPVIKFIIKSIR*********************
Disordered Region (DISOPRED)
MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAKDMHLPANELAVTQTNSLTSHENNQKHEGKKDLKGTPWNLDDWLKEKRNAAMIVATGIATMGFQAGVNPPNSSRLDASSFVAHNTLGFLSSLSVILLLLFSLPINRTLFVWIVMIMMGVAIGEMAWVYAVSIDVIGETNSSDSTRSTIVTRVWIVGVFLGNSSYLMVPVIKFI***********************SIV
Disordered Region (DISEMBL)
MTILQLAVAAALLGHEDFVNEILCQKPEL************************DVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAKDMHLPANELAVTQTN***************DLKGTPWNLDDWLKEKRNAAMIVATGIATMGFQAGVNPPNSSRLDASSFVAHNTLGFLSSLSVILLLLFSLPINRTLFVWIVMIMMGVAIGEMAWVYAVSIDVIGETNSSDSTRSTIVTRVWIVGVFLGNSSYLMVPVIKFIIKSIR*********************
Disordered Region (DISPRO)
MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAKDMHLPANELAVTQTNSLTSHEN*****G*KDLKGTPWNLDDWLKEKRNAAMIVATGIATMGFQAGVNPPNSSRLDASSFVAHNTLGFLSSLSVILLLLFSLPINRTLFVWIVMIMMGVAIGEMAWVYAVSIDVIGETNSSDSTRSTIVTRVWIVGVFLGNSSYLMVPVIKFIIKSIR*********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAKDMHLPANELAVTQTNSLTSHENNQKHEGKKDLKGTPWNLDDWLKEKRNAAMIVATGIATMGFQAGVNPPNSSRLDASSFVAHNTLGFLSSLSVILLLLFSLPINRTLFVWIVMIMMGVAIGEMAWVYAVSIDVIGETNSSDSTRSTIVTRVWIVGVFLGNSSYLMVPVIKFIIKSIRRSSHIQAQDGRDNEPPIASIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	383	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.822	0.533	0.234	1e-08
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.822	0.601	0.242	2e-07
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.720	0.518	0.236	9e-06

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 157/409 (38%), Gaps = 94/409 (22%)

Query: 8   VAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSA--------------T 53
           V+AA+ GH + VN++L +   L   S S   +ALH+A+++G                   
Sbjct: 203 VSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRI 262

Query: 54  DVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILH 113
           D  G+ ALH+A      +V++ L+ A P     P                 D +  T LH
Sbjct: 263 DKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQP-----------------DKSCNTALH 305

Query: 114 LAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIG 173
           +A   K+ EI           ++   +      N +  +  TA DI        +   I 
Sbjct: 306 VATRKKRAEI-----------VELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIK 354

Query: 174 ELLRRARGNSAKDMHLPANELAVTQTNSLTSHENNQKHEGKKDLKGTPWNLDDWLKEKR- 232
           E L R+    A +++ P +EL  T T        N  H   +  K T  N+ +  KE R 
Sbjct: 355 ECLARSGALRANELNQPRDELRSTVTQI-----KNDVHIQLEQTKRTNKNVHNISKELRK 409

Query: 233 ----------NAAMIVATGIATMGFQAGVNPPNSSRLDASS----------FVAHNTLGF 272
                     N+  +VA   AT+ F A    P     D S+          F   N L  
Sbjct: 410 LHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVGRASFKIFFIFNALAL 469

Query: 273 LSSLSVILLLLFSLP------------INRTLFVWIVMIMMGVAIGEMAWVYAVSIDVIG 320
            +SL+V+++ +  +             IN+   +W+  +   VA    +++      V+G
Sbjct: 470 FTSLAVVVVQITLVRGETKAEKRVVEVINK--LMWLASMCTSVAFLASSYI------VVG 521

Query: 321 ETNSSDSTRSTIVTRVWIVGVFLGNSSYLMVP-----VIKFIIKSIRRS 364
             N   +   T+V  V + GV LG  +Y +V       ++  +KS RRS
Sbjct: 522 RKNEWAAELVTVVGGVIMAGV-LGTMTYYVVKSKRTRSMRKKVKSARRS 569

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 170/416 (40%), Gaps = 101/416 (24%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK----CSATD--VD------- 56
           AA  G+   ++ ++   PEL+   DS K++ALH A+ +G     C   D  VD       
Sbjct: 98  AAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARS 157

Query: 57  -GRNALHLAAMEGHIDVLEELVRAKP------------------DAASAPLKSFLETREG 97
            G+ ALH AA  GH  ++++L+  K                      +  +   L   +G
Sbjct: 158 NGKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADG 217

Query: 98  SELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAW 157
           S L+N+ D+ G T LH+AV   + EI  T + Y             +   AVN +G TA 
Sbjct: 218 S-LINSADNKGNTPLHIAVRKNRAEIVQTVLKY-----------CEVSRVAVNKSGETAL 265

Query: 158 DILAQSKRDIKYWEIGELLRRARGNSAKDMHLPANEL-------AVTQTNSLTSHENN-- 208
           DI  ++       EI  LL++    +A+ +  PA ++        + +T S   HE +  
Sbjct: 266 DIAEKT----GLHEIVPLLQKIGMQNARSIK-PAEKVEPSGSSRKLKETVSEIGHEVHTQ 320

Query: 209 --QKHEGKKDLKGTPWNLDDWLKEKRNAAM----IVATGIATMGFQAGVN---------- 252
             Q    +++++G    ++    E  N A+    +VA  IAT+ F A  N          
Sbjct: 321 LEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPK 380

Query: 253 --PPNSSRLDASS--------FVAHNTLGFLSSLSVILLLLFSLPINR----------TL 292
             PP  S  +A +        FV  ++     SL+V+++    + I R            
Sbjct: 381 DVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVVIERRAKKQMMAIINK 440

Query: 293 FVWIVMIMMGVAIGEMAWVYAVSIDVIGETNSSDSTRSTIVTRVWIVGVFLGNSSY 348
            +W+  IM+ VA   +++V      V+GE     +   T +  + +V   LG   Y
Sbjct: 441 LMWMACIMISVAFVSLSFV------VVGEKEKPLAVGVTAIGALIMVST-LGTMCY 489

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 132/346 (38%), Gaps = 70/346 (20%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKC----SATDVD--------- 56
           AA  GH   V E+L   PEL R  D+  +S L+ A+ +       +  DVD         
Sbjct: 101 AAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRK 160

Query: 57  -GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
            G+ +LH A   G + +++ L+  + DAA               ++   D  G T LH+A
Sbjct: 161 NGKTSLHTAGRYGLLRIVKALI--EKDAA---------------IVGVKDKKGQTALHMA 203

Query: 116 VADKQIEI--------------------WITHI-TYKSRA--IKFFTTSTAIEVNAVNAN 152
           V  + +E+                       HI T K+R        T TAIEVNA+N  
Sbjct: 204 VKGRSLEVVEEILQADYTILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQ 263

Query: 153 GFTAWDILAQSKRDIKYWEIGELLRRARGNSAKDMHLPANELAVTQTNSLTSHENN---- 208
             TA D+  + +      EI E L  A     + +       A+ +  S   HE      
Sbjct: 264 KETAMDLADKLQYSESALEINEALVEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLL 323

Query: 209 QKHEGKKDLKGTPWNLDDWLKE----KRNAAMIVATGIATMGFQAGVNPPNSSRLDASSF 264
           Q  +  + + G    L    +E      N+  +VA   A++ F A  N P     + S  
Sbjct: 324 QNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHV 383

Query: 265 VAHNTLGFLSSLSVILLLLFSLPINRTLFVWIVMIMMGVAIGEMAW 310
              N  G           +F L    +LF+ + ++++ + +  +AW
Sbjct: 384 GQANIAGRTG------FRVFCLLNATSLFISLAVVVVQITL--VAW 421

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
343887300	469	ankyrin repeat family protein [Citrus un	0.890	0.727	0.421	6e-69
296081692	444	unnamed protein product [Vitis vinifera]	0.885	0.763	0.405	3e-62
343887301	470	Ankyrin repeat family protein [Citrus un	0.890	0.725	0.411	8e-62
359475962	486	PREDICTED: ankyrin repeat-containing pro	0.762	0.600	0.423	1e-59
343887311	473	ankyrin repeat family protein [Citrus un	0.864	0.699	0.390	5e-59
359475964	491	PREDICTED: ankyrin repeat-containing pro	0.791	0.617	0.378	1e-54
224088778	491	predicted protein [Populus trichocarpa]	0.838	0.653	0.356	6e-52
343887299	477	ankyrin repeat family protein [Citrus un	0.801	0.643	0.378	9e-49
224092119	471	predicted protein [Populus trichocarpa]	0.767	0.624	0.367	3e-48
359484291	533	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.866	0.622	0.303	4e-38

>gi|343887300|dbj|BAK61846.1| ankyrin repeat family protein [Citrus unshiu]

 Score =  267 bits (683), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 178/422 (42%), Positives = 235/422 (55%), Gaps = 81/422 (19%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------CSATDV 55
           A++LGHE FV EIL +KPELA + DSR+SSALH A+ KG               C A D 
Sbjct: 44  ASMLGHESFVREILSRKPELAGELDSRRSSALHFAAAKGHLGIVLKLLSVNPKMCCACDR 103

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAAS-------------------APLKSFLETRE 96
           DG+N LH+AA++GH++VL ELV+ +P A                       LK  +ET  
Sbjct: 104 DGKNPLHVAAIKGHVNVLRELVQVRPKACRILMDRGETILHACVNYNQLECLKLLVETLN 163

Query: 97  GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
             E +N+ DD+G TILHLAV DKQ+E           A+KF T ST IEVNAVNANGFTA
Sbjct: 164 DHEFVNSKDDDGNTILHLAVIDKQVE-----------AVKFLTGSTTIEVNAVNANGFTA 212

Query: 157 WDILAQSKRDIKYWEIGELLRRARGNSAKDMHLPANELAVTQTNS-LTSHENNQKHEGK- 214
            DILAQ K D+    IGELLR A   S K+   PA+    T+T S +TSH  +  ++G+ 
Sbjct: 213 LDILAQRKLDMNS-TIGELLRCAGARSLKETREPASGTTKTRTGSIITSHSGDPSNQGRE 271

Query: 215 KDLKGTPWNLDDWLKEKRNAAMIVATGIATMGFQAGVNPP------NSSRLDASS----- 263
           +  K      D W ++KRN  M+VA+ IATM FQAG+NPP      +S + DAS      
Sbjct: 272 RPEKARKKQEDKWSEKKRNTLMVVASLIATMAFQAGLNPPGGVWQDDSPKNDASRHQAGC 331

Query: 264 -------------FVAHNTLGFLSSLSVILLLLFSLP-INRTLFVWIVMIMMGVAIGEMA 309
                        F   NT GF++SLS+ILL +  +P   R  F+WI+ ++M VAI  MA
Sbjct: 332 SVMLTQDEISYNLFFGFNTTGFVASLSIILLFISGIPFFKRRFFMWILTVIMWVAISAMA 391

Query: 310 WVYAVSIDVIGETNSSDST----RSTIVTRVWI--VGVF-LGNSSYLMVPVIKFIIKSIR 362
             Y  +I  +G TNS +S      STIV   WI  +G+  L +   L+V +IKF +K ++
Sbjct: 392 LAYLFAI--LGITNSGNSMIPWYASTIVLLGWIGFIGILILAHIVRLIVKMIKFFLKLMK 449

Query: 363 RS 364
           RS
Sbjct: 450 RS 451

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081692|emb|CBI20697.3| unnamed protein product [Vitis vinifera]

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 173/427 (40%), Positives = 233/427 (54%), Gaps = 88/427 (20%)

Query: 6   LAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------CS 51
           ++V  ALLGH DF  EIL QKPELA + D R+SS LH+A+ KG               C 
Sbjct: 9   ISVNHALLGHADFAKEILLQKPELAAELDYRRSSPLHLAAAKGYIEIVKELLFVNPEMCL 68

Query: 52  ATDVDGRNALHLAAMEGHIDVLEELVRAKPDA--ASAP-----------------LKSFL 92
           A D DGRN +HLAAM GH+ VL+ELV+AKP A  A+ P                 LK  +
Sbjct: 69  ACDRDGRNPVHLAAMRGHVHVLKELVQAKPHATWAALPRGETILHLCVKHNQLEALKLLV 128

Query: 93  ETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNAN 152
           ET +  E+++A DDNG TILHLAVADKQ+E            I +  +ST+IEVNAVN N
Sbjct: 129 ETADAHEIMSAKDDNGFTILHLAVADKQLE-----------TINYLLSSTSIEVNAVNLN 177

Query: 153 GFTAWDILAQSKRDIKYWEIGELLRRARGNSAKDMHLPANELAVTQTNSLTSHENNQKHE 212
           G TA DILAQS+RD++  EI ELLR      AK++   A E   ++T  ++S  ++Q   
Sbjct: 178 GCTASDILAQSRRDVQDMEISELLRHVGAAKAKNISFSAYEFGSSRTRGMSSDADDQNRV 237

Query: 213 G---KKDLKGTPWNLDDWLKEKRNAAMIVATGIATMGFQAGVNPP-----NSSRLDA--- 261
                K+        DDWL ++++A M+VA+ IATM FQAGV+PP     ++S+ D    
Sbjct: 238 PCPIGKNCNEFNKKKDDWLDKQQSALMVVASLIATMAFQAGVSPPGDVWGDNSKYDPEGS 297

Query: 262 --------------------------SSFVAHNTLGFLSSLSVILLLLFSLPINRTLFVW 295
                                     +SF+  NT+ FL+SLS+ILLL+  LPINR LFVW
Sbjct: 298 PAPAPSSETPHTAGLSIMADNNPDAHTSFLVTNTISFLASLSIILLLISGLPINRRLFVW 357

Query: 296 IVMIMMGVAIGEMAWVYAVSIDVIGETNSSD--STRSTIVTRVWIVGVFLGNSSYLMVPV 353
           I+M++M +A+  M   Y VSI  +   +  D  S   T+V   W   V L     L+V +
Sbjct: 358 ILMVIMWIAVTAMTLTYLVSITALTPNHELDHLSCMITVVAYAWTCLVAL-----LLVDL 412

Query: 354 IKFIIKS 360
           I  +IK+
Sbjct: 413 ILKMIKN 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887301|dbj|BAK61847.1| Ankyrin repeat family protein [Citrus unshiu]

 Score =  243 bits (621), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 174/423 (41%), Positives = 235/423 (55%), Gaps = 82/423 (19%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------CSATDV 55
           A++LGHE+FV EIL +KPELA + DSR+SSALH+A+ KG               C A D 
Sbjct: 44  ASMLGHENFVREILSRKPELAGELDSRRSSALHLAAAKGHLGIVLKLVSVNPKMCCACDR 103

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAAS-------------------APLKSFLETRE 96
           DG+N LH+AA++GH++VL ELV+ +P A                       LK  +ET  
Sbjct: 104 DGKNPLHVAAIKGHVNVLRELVQVRPKACRILMDRGETILHACVNYNQLECLKLLVETLN 163

Query: 97  GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTS-TAIEVNAVNANGFT 155
             E +N+ DD+G TILHLAV DKQ+E            IKF T S T +EVNAVNANGFT
Sbjct: 164 DHEFVNSKDDDGNTILHLAVIDKQVE-----------TIKFLTDSCTTLEVNAVNANGFT 212

Query: 156 AWDILAQSKRDIKYWEIGELLRRARGNSAKDMHLPANELAVTQTNS-LTSHENNQKHEGK 214
           A DILA+ K D+  W IGELLR A   S K+   P+  +  T T S +TSH ++  ++G+
Sbjct: 213 ALDILARRKLDVN-WTIGELLRCAGARSQKETREPSPAITQTPTGSIITSHSDDPSNQGR 271

Query: 215 -KDLKGTPWNLDDWLKEKRNAAMIVATGIATMGFQAGVNPP-----------NSSRLDAS 262
            +  K      D+W ++KRNA M+VA+ IATM FQA +NPP           ++S  DA 
Sbjct: 272 ERPEKVRKKQEDEWSEKKRNALMVVASLIATMAFQAALNPPGGVWQDDSQANDTSPHDAG 331

Query: 263 S-------------FVAHNTLGFLSSLSVILLLLFSLP-INRTLFVWIVMIMMGVAIGEM 308
           S             F   NT GF++SLS+ILLL+  +P   R  F+WI+ ++  VAI  M
Sbjct: 332 SSIMLTNVESVYYLFFGFNTTGFVASLSIILLLISGIPFFKRRFFMWILTVITWVAISAM 391

Query: 309 AWVYAVSIDVIGETNSSDSTRSTI----VTRVWI--VGVF-LGNSSYLMVPVIKFIIKSI 361
           A  Y     V+G TNS +S         V   WI  +G+  L +   LMV +IKF++K +
Sbjct: 392 ALTYLFG--VVGITNSGNSVAPQCGFLYVMDGWIGLIGILILAHIVRLMVKMIKFLLKLM 449

Query: 362 RRS 364
           +RS
Sbjct: 450 KRS 452

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475962|ref|XP_002279591.2| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 158/373 (42%), Positives = 209/373 (56%), Gaps = 81/373 (21%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------CSATDV 55
           AALLGH DF  EIL QKPELA + D R+SS LH+A+ KG               C A D 
Sbjct: 40  AALLGHADFAKEILLQKPELAAELDYRRSSPLHLAAAKGYIEIVKELLFVNPEMCLACDR 99

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDA--ASAP-----------------LKSFLETRE 96
           DGRN +HLAAM GH+ VL+ELV+AKP A  A+ P                 LK  +ET +
Sbjct: 100 DGRNPVHLAAMRGHVHVLKELVQAKPHATWAALPRGETILHLCVKHNQLEALKLLVETAD 159

Query: 97  GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
             E+++A DDNG TILHLAVADKQ+E            I +  +ST+IEVNAVN NG TA
Sbjct: 160 AHEIMSAKDDNGFTILHLAVADKQLE-----------TINYLLSSTSIEVNAVNLNGCTA 208

Query: 157 WDILAQSKRDIKYWEIGELLRRARGNSAKDMHLPANELAVTQTNSLTSHENNQKHEG--- 213
            DILAQS+RD++  EI ELLR      AK++   A E   ++T  ++S  ++Q       
Sbjct: 209 SDILAQSRRDVQDMEISELLRHVGAAKAKNISFSAYEFGSSRTRGMSSDADDQNRVPCPI 268

Query: 214 KKDLKGTPWNLDDWLKEKRNAAMIVATGIATMGFQAGVNPP-----NSSRLDA------- 261
            K+        DDWL ++++A M+VA+ IATM FQAGV+PP     ++S+ D        
Sbjct: 269 GKNCNEFNKKKDDWLDKQQSALMVVASLIATMAFQAGVSPPGDVWGDNSKYDPEGSPAPA 328

Query: 262 ----------------------SSFVAHNTLGFLSSLSVILLLLFSLPINRTLFVWIVMI 299
                                 +SF+  NT+ FL+SLS+ILLL+  LPINR LFVWI+M+
Sbjct: 329 PSSETPHTAGLSIMADNNPDAHTSFLVTNTISFLASLSIILLLISGLPINRRLFVWILMV 388

Query: 300 MMGVAIGEMAWVY 312
           +M +A+  M   Y
Sbjct: 389 IMWIAVTAMTLTY 401

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887311|dbj|BAK61857.1| ankyrin repeat family protein [Citrus unshiu]

 Score =  234 bits (597), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 162/415 (39%), Positives = 216/415 (52%), Gaps = 84/415 (20%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------CSATDV 55
           A++LGH DFV EI+ QKPELA + DSRK+S LH+AS KG               C   D 
Sbjct: 44  ASMLGHVDFVQEIVSQKPELAGELDSRKASPLHVASAKGYLVIVKKLVSVNPEMCYVRDR 103

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASA-------------------PLKSFLETRE 96
           DGRN LH+AA++GH++VL ELV+ +P AA                      +K  L+   
Sbjct: 104 DGRNPLHVAAIKGHVNVLRELVQVRPQAARMLMDRGETILHACVRYNQLESMKFLLDILS 163

Query: 97  GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
             E +N  +++G TILHLAVADKQ E           AIK  TTST IEVNA+NANG  A
Sbjct: 164 DREFVNYKNNDGNTILHLAVADKQTE-----------AIKVLTTSTTIEVNALNANGLAA 212

Query: 157 WDILAQSKRDIKYWEIGELLRRARGNSAKDMHLPANELAVTQTNSLTSHENNQKHEGKKD 216
            DIL Q K D K  EI ELL RA   SA+D      +      +   SH NN     + +
Sbjct: 213 LDILPQIKGDEKDSEIIELLGRASAISARDEGKKKKKKKTKTPSK--SHVNNDNLARRDE 270

Query: 217 LKGTPWNLDDWLKEKRNAAMIVATGIATMGFQAGVNPP-------------------NSS 257
                    DWL++KR+  M+VA+ IATM FQ G NPP                    SS
Sbjct: 271 Y--------DWLRKKRSTLMVVASLIATMAFQVGANPPGGLWQDNFVGDEKTPAHNAGSS 322

Query: 258 RLDASS------FVAHNTLGFLSSLSVILLLLFSLPINRTLFVWIVMIMMGVAIGEMAWV 311
            L   S      F+  N++ F++SLS+ILLL+  LPI   + +W++M++M VAI  +A  
Sbjct: 323 ILADLSPEAYGHFLTSNSIAFVASLSIILLLVSGLPIRNRILMWVLMVIMWVAITAIAVT 382

Query: 312 YAVSIDVIGETNSSDSTRSTI--VTRVWI---VGVFLGNSSYLMVPVIKFIIKSI 361
           Y +S+      + +++  S I  V  VWI     +F G++  LMV +IKFI K I
Sbjct: 383 YLLSMSAFTPAHEANTYASVIGYVILVWIGLCAILFFGHTIRLMVRIIKFIRKLI 437

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475964|ref|XP_002279612.2| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 150/396 (37%), Positives = 202/396 (51%), Gaps = 93/396 (23%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------CSATDV 55
           AA+LGH DFV EILC KPELAR+ DSR  S LH+AS KG               C A D 
Sbjct: 44  AAMLGHTDFVKEILCLKPELARELDSRGFSPLHLASAKGYTEVVKAFLLVDPDMCFACDR 103

Query: 56  DGRNALHLAAMEGHIDVLEELVR--------------------AKPDAASAPLKSFLETR 95
            GRN LHLAAM+G  DVL+ELVR                     K +   A LK  +ET 
Sbjct: 104 YGRNPLHLAAMKGRFDVLKELVRARPHAARARAERGETILHLCVKQNQLEA-LKFLVETM 162

Query: 96  EG-SELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGF 154
           +  ++L+N  D+NG TILHLAVADKQIE            + +  ++T +EVNA+N +G 
Sbjct: 163 DDHNDLVNTRDNNGFTILHLAVADKQIE-----------TVNYLLSNTRVEVNALNTSGL 211

Query: 155 TAWDILAQSKRDIKYWEIGELLRRARGNSAKDMHLPANELAVTQTNSLTSHENNQKHEGK 214
           TA DIL    RD+   +IGE  R      A + HLP +   V Q  S          EG 
Sbjct: 212 TALDILVHGLRDVGDLDIGEAFRGTGAMRAMNTHLPNHHPQVLQLTS----------EGD 261

Query: 215 KDLKGTPWNLDDWLKEKRNAAMIVATGIATMGFQAGVNPPNSSRLDASS----------- 263
           + +K      + WL  KR+A M+VA+ IATM FQA VNPP  +  D S+           
Sbjct: 262 RSMKSK--GKEHWLTRKRDALMVVASLIATMAFQAAVNPPGGAWQDNSTQNSQDTQAGKS 319

Query: 264 ------------------FVAHNTLGFLSSLSVILLLLFSLPINRTLFVWIVMIMMGVAI 305
                             ++++NT GF+SSLS+IL+L+  LP    LF+W++ +++ VAI
Sbjct: 320 HAAGKAIMADSNEEYYRLYLSYNTTGFISSLSIILMLITGLPFTHRLFMWMLTVVVWVAI 379

Query: 306 GEMAWVYAVSIDVIGETNSSDSTRSTIVTRVWIVGV 341
             MA  Y  ++  +    + DS  +  VT + +VGV
Sbjct: 380 TSMALTYRTAMTFL----TPDSAEAA-VTNIIVVGV 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088778|ref|XP_002308536.1| predicted protein [Populus trichocarpa] gi|222854512|gb|EEE92059.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (536), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 146/409 (35%), Positives = 214/409 (52%), Gaps = 88/409 (21%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------CSATDV 55
           AA+LGH +F  EIL +KP+L  + D  +SS LH+A+  G               C   D 
Sbjct: 85  AAMLGHLEFTREILWRKPDLVNELDLHRSSPLHLATANGHLEVVRVLLLVDADLCLVKDR 144

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASA-----------PLKSF-LE--------TR 95
           +  N LH+A ++G IDVL+ELV+AKPDA               +K + LE        T 
Sbjct: 145 NRWNPLHVAVIKGRIDVLKELVQAKPDAIRTRGQRGETILHLCVKHYQLEALKFLVGITI 204

Query: 96  EGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFT 155
             +E +N+ DD+G TILHLAVAD++IE+           I +  + + I+VNA+NANGFT
Sbjct: 205 ADTEFVNSEDDDGFTILHLAVADREIEV-----------INYLISESPIQVNALNANGFT 253

Query: 156 AWDI-LAQSKRDIKYWEIGELLRRARGNSAKDMHLPANEL-AVTQTNSLTSHENNQKHEG 213
           A DI LAQ +R+IK  +I   LR     S+KDM    + L A+   NS T +E N     
Sbjct: 254 ALDIVLAQGRRNIKDIDIQNTLREGGAISSKDMPSTMHGLDAIRPNNSTTLNERN----- 308

Query: 214 KKDLKGTPWNLDDWLKEKRNAAMIVATGIATMGFQAGVNPPNSSRL-------------- 259
                   W   +WL+E+RNA M+VA+ IATM FQAG++PPN +                
Sbjct: 309 -------CWRKKNWLEERRNALMVVASLIATMAFQAGISPPNGNWQEDRQQPPSQSHEAG 361

Query: 260 ----------DASSFVAHNTLGFLSSLSVILLLLFSLPINRTLFVWIVMIMMGVAIGEMA 309
                     D + FV +NT  FL+S+SVI+LL+  LP    +F WI+MI+M +A+    
Sbjct: 362 RSIMADKMPDDFAFFVGYNTTSFLASISVIILLISGLPFKWRIFTWILMIIMWIAVIATI 421

Query: 310 WVYAVSIDVI----GETNSSDSTRSTIVTRVWIVGVFLGNSSYLMVPVI 354
           W Y +SI  +    GE+ ++ +  + +   V  + V +G+S  L+  ++
Sbjct: 422 WTYYISISCLSSRRGESTTAKAGAAVVFYGVMGI-VLIGHSIRLIRKIV 469

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887299|dbj|BAK61845.1| ankyrin repeat family protein [Citrus unshiu]

 Score =  200 bits (509), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 158/417 (37%), Positives = 205/417 (49%), Gaps = 110/417 (26%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------CSATDV 55
           AAL GH  F  EIL + P LA + DSR SS LH+A+QKG               C A DV
Sbjct: 47  AALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDV 106

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASA-------------------PLKSFLETRE 96
           DGRN LH+AAM+G I VL EL RA+P AA +                    LK  +    
Sbjct: 107 DGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMN 166

Query: 97  GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
             + LNA DD GM+ILHLAVADKQIE            I +   +T +EVNA+N +G+TA
Sbjct: 167 DPDFLNAKDDYGMSILHLAVADKQIE-----------TINYLLVNTRVEVNALNTHGYTA 215

Query: 157 WDILAQSKRDIKYWEIGELLRRARGNSAKDMH--LPANELAVTQ--------TNSLTSHE 206
            DILAQS+RDIK  +I + LR A    A ++   L  N  ++ +        +NS+  H+
Sbjct: 216 LDILAQSRRDIKDLDIADSLRGAGAFKAIEIQSSLNRNSTSIGRSVRNNRAVSNSIIPHD 275

Query: 207 NNQKHEGKKDLKGTPWNL----------DDWLKEKRNAAMIVATGIATMGFQAGVNPP-- 254
                     LK  P             +DWL  KR+A M+VA+ IATM FQAGVNPP  
Sbjct: 276 Q---------LKALPQECLINLQQKNKTEDWLTRKRDALMVVASLIATMAFQAGVNPPGG 326

Query: 255 ---------------NSS---------------RLDASSFVAHNTLGFLSSLSVILLLLF 284
                          NS+               R   ++++A NT GF+SSLS+ILLL+ 
Sbjct: 327 VWQDDFPGPGDGSQENSTAEAHQAGTAIIAYKYRSRYANYLAFNTAGFISSLSIILLLIT 386

Query: 285 SLPINRTLFVWIVMIMMGVAIGEMAWVYAVSIDVIGETNSSDSTRSTIVTRVWIVGV 341
            LP  R  F+W++ + + +AI  MA  Y VSI V        +     VTRV   GV
Sbjct: 387 GLPFKRRFFMWVLTVTVWIAITSMALTYRVSILVFTPKKDERT-----VTRVVEYGV 438

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092119|ref|XP_002309480.1| predicted protein [Populus trichocarpa] gi|222855456|gb|EEE93003.1| predicted protein [Populus trichocarpa]

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 135/367 (36%), Positives = 192/367 (52%), Gaps = 73/367 (19%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------CSATDV 55
           +A+LGH +F  +ILC+KPE A++ D   SS LH+A+  G               C A + 
Sbjct: 58  SAMLGHLEFTRKILCRKPEFAKELDFLGSSPLHLATANGHLEVVRALLSVNPDMCFAQNR 117

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAAS-------------------APLKSFLETRE 96
           DGRN LH+A ++G +DVL+ELV+ KP+A                       LK  +ET +
Sbjct: 118 DGRNPLHIAVIKGRVDVLKELVQNKPEAVLHRTARGETVLHLCVKHFQLEALKLLVETIK 177

Query: 97  GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
               +N+ D++G T+LHLAVADK+IEI           I F    T IEVNA+NA+GFT 
Sbjct: 178 DYGFINSKDEDGSTVLHLAVADKEIEI-----------ISFLIMKTEIEVNAINASGFTV 226

Query: 157 WDI-LAQSKRDIKYWEIGELLRRARGNSAKDMHLPANELAVTQTNSLTSHENNQKHEGKK 215
            DI LAQ +R+ K  ++ + L +   +SAKD+    + L      +L S ++    + + 
Sbjct: 227 LDIALAQGRRNWKDVDVQDSLHQVGASSAKDLSSTMHRLEAVGAVNLRSEDHFTSLQSR- 285

Query: 216 DLKGTPWNLDDW-LKEKRNAAMIVATGIATMGFQAGVNPPN------------------- 255
            LK        + L EKRNA MIVA+ IATM FQAG++PP                    
Sbjct: 286 -LKRKYQRRQSYGLGEKRNALMIVASLIATMAFQAGISPPGGLWQEDSQGATSNEHHEAG 344

Query: 256 ----SSRLDAS--SFVAHNTLGFLSSLSVILLLLFSLPINRTLFVWIVMIMMGVAIGEMA 309
               + +L A+   FV HN++ FL+SLSVILLL+  LP      +WI+  +M VAI E  
Sbjct: 345 RSIMADKLPAAYNKFVMHNSIAFLASLSVILLLISGLPFRWRFSMWILTAIMWVAITEST 404

Query: 310 WVYAVSI 316
           + Y +SI
Sbjct: 405 FTYLISI 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484291|ref|XP_002280512.2| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 129/425 (30%), Positives = 187/425 (44%), Gaps = 93/425 (21%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG--------------KCSATDV 55
           AA+LGH DF + +L  KP++    D R  S LH+AS  G               C   D 
Sbjct: 61  AAMLGHLDFASYLLTHKPDMTMALDLRGRSPLHLASANGYVERVNILLSSNPDACLMRDE 120

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAAS-------------------APLKSFLETRE 96
           DGR  LHLA M+G ++V   LV A+P                         LK  +E   
Sbjct: 121 DGRTPLHLAVMKGEVEVTRMLVGARPQVTRYKLDQGETILHSAVKQNRLGALKLLVELAR 180

Query: 97  GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
             E +N+ DD G T+LH A A KQ E             K+      +EVNAVN NGFTA
Sbjct: 181 DXEFVNSKDDYGNTVLHTATALKQYE-----------TAKYLVKRPEMEVNAVNGNGFTA 229

Query: 157 WDILAQSKRDIKYWEIGELLRRARGNSAKDMH-LPANELAVTQTNSLTSHENNQ------ 209
            DI+    RD+K  EI E L +A   S++++  LP         + +T    N       
Sbjct: 230 LDIIQHMPRDLKGMEIRESLAKAGALSSRNLPALPGIGHEFMGESGITMVIENPQLSPPP 289

Query: 210 --------KHEGKKDLKGTPW----NLDDWLKEKRNAAMIVATGIATMGFQAGVNPP--- 254
                   + +  + L+G       N  +W  +KRNA M+ AT IA M FQA VNPP   
Sbjct: 290 PLPAAVLTEAKAPRPLQGREMKIRENKKEWTMKKRNALMVAATLIAGMAFQAAVNPPGGV 349

Query: 255 --------NSSRLDASS-------------FVAHNTLGFLSSLSVILLLLFSLPINRTLF 293
                   N  ++ A +             F+A N + F++SLS++ L++  + + R + 
Sbjct: 350 WGEEKDGSNGKKMLAGTSIMAHNYPEGYRLFMACNAVYFVASLSIVFLVVSGVLVKRRIL 409

Query: 294 VWIVMIMMGVAIGEMAWVYAVSIDVIGETNSSDSTRSTIVTRVWIVGVFLGNSSYLMVPV 353
           +W++MI+M + +  MA  Y  SI  I  TN  D T +   T      + LG+     VP 
Sbjct: 410 MWLLMIIMSITLTFMALTYMFSILAIAPTN--DDTEAMSPTNNDTEAMLLGHK----VPD 463

Query: 354 IKFII 358
           I +++
Sbjct: 464 ITYVV 468

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
TAIR|locus:2176252	442	AT5G51160 "AT5G51160" [Arabido	0.626	0.542	0.302	7.4e-13
TAIR|locus:2012873	578	AT1G10340 "AT1G10340" [Arabido	0.378	0.250	0.207	3.7e-06
TAIR|locus:2157553	598	AT5G54710 "AT5G54710" [Arabido	0.553	0.354	0.234	4e-06
TAIR|locus:2180882	457	AT5G15500 [Arabidopsis thalian	0.279	0.234	0.258	2.3e-05
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.681	0.429	0.231	4.7e-05
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.543	0.388	0.219	0.00013
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.647	0.374	0.254	0.00019
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.472	0.315	0.281	0.00019
TAIR|locus:2046628	601	AT2G24600 "AT2G24600" [Arabido	0.540	0.344	0.233	0.0004
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.477	0.297	0.247	0.00058

TAIR|locus:2176252 AT5G51160 "AT5G51160" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 7.4e-13, P = 7.4e-13
 Identities = 84/278 (30%), Positives = 125/278 (44%)

Query:     9 AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------CSATD------ 54
             AAA  G  + V   L  + +L R  D    + LH+A+ +GK         S  D      
Sbjct:    53 AAAAAGQVETVRATLGVEKKLCRLKDRDGKTPLHVATMRGKIDVIREIVASCVDCLEDET 112

Query:    55 VDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHL 114
             V G+ ALHLA +  H+++         +A  A ++   ET    ++LN  D+ G T LHL
Sbjct:   113 VQGQTALHLAVL--HLEI---------EAVIAIVELITETNR-FDVLNKKDEQGNTALHL 160

Query:   115 AVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGE 174
             A   K  ++    I    +AI     S + EVNA+N  G +A D+L     +    EI E
Sbjct:   161 ATWRKNRQV----IEVLVQAIP--EESRSFEVNAMNKMGLSAMDLLVMFPSEAGDREIYE 214

Query:   175 LLRRARGNSAKDMHLPANELAVTQTNSLTSHENNQKHEGKKDL-KGTPWNLD-DWLKEKR 232
              L  A     +D+    N    T T+  T  E   K +  K+L K   +    D   E R
Sbjct:   215 KLIEAGAQRGRDIGT-TNVERTTSTS--TCQERTMKSQSHKELVKYFTFKKHRDSPSEAR 271

Query:   233 NAAMIVATGIATMGFQAGVNPPNSSRLDAS-SFVAHNT 269
             +A ++VA+ +AT  FQA + PP  +  D+S   V+ NT
Sbjct:   272 SALLVVASLVATATFQASLTPPGGTWQDSSIPAVSQNT 309

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2012873 AT1G10340 "AT1G10340" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
 Identities = 35/169 (20%), Positives = 78/169 (46%)

Query:   100 LLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI 159
             LL   D++G T+LH+A +          +++ +  I++      +++ + N  GF A+ +
Sbjct:   269 LLQQTDESGNTVLHIAAS----------VSFDAPLIRYIVGKNIVDITSKNKMGFEAFQL 318

Query:   160 LAQSKRDIKY---W-EIG-ELLRRARGNSAKDMHLPANELAVTQ--------TNSLTSHE 206
             L +  +D +    W   G E  +     +  + H  + E+ V +        T+ +   +
Sbjct:   319 LPREAQDFELLSRWLRFGTETSQELDSENNVEQHEGSQEVEVIRLLRIIGINTSEIAERK 378

Query:   207 NNQKHEGKKDLKGTPWNLD-DWLKEKRNAAMIVATGIATMGFQAGVNPP 254
              +++ E ++  +   + +  + L+  RN   IVA  IA++ +  G+NPP
Sbjct:   379 RSKEQEVERGRQNLEYQMHIEALQNARNTIAIVAVLIASVAYAGGINPP 427

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2157553 AT5G54710 "AT5G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
 Identities = 55/235 (23%), Positives = 95/235 (40%)

Query:    54 DVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLET---------REGSELLNAN 104
             D DG   LH A + G +++L+E +   P + +   +  +ET         +  + +  A 
Sbjct:   230 DKDGLTPLHRAVINGSVEILKEFLCKAPSSFNITTQGTIETVFHLAAKYQKTKAFIFMAQ 289

Query:   105 DDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSK 164
               N   +L+   A+    + +      +  ++   + T I+V   N  GF A D++ +  
Sbjct:   290 SANIRQLLYSLDAEDNTVLHVAASVDSTSLVRHILSETTIDVTLKNKKGFAAVDLIDKEG 349

Query:   165 RD---IKYW---EIGELLRRARGNSAKDMHLPANELAVTQTNSLTSHENNQK---HEGKK 215
              D   +  W   E  ++ R AR    K  H P   +  T      S E+       EG+ 
Sbjct:   350 VDFPLLSLWFRDEAEKIQRPAR--YVKFAHEPVELIRNTNNGEKLSSESRAMDLLREGR- 406

Query:   216 DLKGTPWNL-DDWLKEKRNAAMIVATGIATMGFQAGVNPPNSSRLDASSFVAHNT 269
             D +     +  + L+  RN   IVA  IA++ F  G+NPP     D   F+   T
Sbjct:   407 DPRNKEREMHSESLQNARNTITIVAVLIASVAFTCGINPPGGVHQDGP-FIGKAT 460

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180882 AT5G15500 [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
 Identities = 32/124 (25%), Positives = 64/124 (51%)

Query:   133 RAIKFFTTSTAIEVNAVNANGFTAWDI-LAQSKRDIKYWEIGELLRRARGNSAKDMHLPA 191
             +A+K    S+ I VN  N NG T +DI +  + R+I+      +++R  G  +  +    
Sbjct:   204 QAMKLLLESSKINVNIENKNGLTVFDIAVLHNNREIE-----RMVKRHGGKRSVSL---- 254

Query:   192 NELAVTQTNSLTSHENNQKHEGKKDLKGTPWNLDDWL-KEKRNAAMIVATGIATMGFQAG 250
               + +  T+ + + + + + E ++  K   ++   W+ +E+RNA ++VAT I T  +Q  
Sbjct:   255 --VKIKTTSDILASQLSWR-ESRRTKKIRFYS---WISEERRNALLVVATLIVTATYQTV 308

Query:   251 VNPP 254
             + PP
Sbjct:   309 LQPP 312

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 4.7e-05, P = 4.7e-05
 Identities = 65/281 (23%), Positives = 111/281 (39%)

Query:     7 AVAAALLGHEDFVNEILCQK---P--ELARKSDSRKSSALHIASQKGKCSATDVDGRNAL 61
             ++   LL HE  +++ + Q    P    A +  S   + L +A        +  +G+NAL
Sbjct:   192 SIVQLLLEHEPQLSKTVAQSNATPLVSAATRGHSEVVNEL-LAKDSSLLEISRSNGKNAL 250

Query:    62 HLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILH----LAVA 117
             HLAA +GH+D++  L+   P  A    K   +T     +   +      +L     + + 
Sbjct:   251 HLAARQGHVDIVRTLLDKDPQLARRTDKKG-QTSLHMAVKGVSSQVVRLLLRADPAIVML 309

Query:   118 DKQIEIWITHI-TYKSRA--IKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGE 174
               +    + HI T K RA  +          VNA+  +  TA+DI        +  EI E
Sbjct:   310 PDKFGNTVLHIATRKKRAEIVNELLQLPDTNVNALTRDHKTAYDIAEGLTHSEETAEIKE 369

Query:   175 LLRRARGNSAKDMHLPANEL--AVTQTNSLTSHENNQKHEGKKDLKGTPWNLDDW----L 228
             +L R     A +++ P +EL   VT+       +  Q  +  K++ G    L       +
Sbjct:   370 ILSRCGALKANELNQPRDELRKTVTEIKKDVHTQLEQTRKTNKNVDGIAKELRKLHRAGI 429

Query:   229 KEKRNAAMIVATGIATMGFQAGVNPPNSSRLDASSFVAHNT 269
                 N+  +VA   AT+ F A    P        + + H T
Sbjct:   430 NNATNSVTVVAVLFATVAFAAIFTVPGGDDDHGVAVMVHAT 470

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 51/232 (21%), Positives = 98/232 (42%)

Query:    54 DVDGRNALHLAAMEGHIDVLEELVRA-KPDAASAPLKSFLETREGSELLNANDDNGMTIL 112
             D +G   LH AA  G + ++  +V   K +  +   K F    E  +LLN +D++   + 
Sbjct:   177 DGEGNTVLHAAASVGFLSLVSYIVHEIKIEVTTQNDKGF----EAVDLLNKDDEDFKMMS 232

Query:   113 HLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVN-ANGFTAWDILAQS--KRDIKY 169
              +   D +I   +       R     +T T +E + ++   G  A +I  ++    + K 
Sbjct:   233 MILGHDSEI---VQRAASSPRDAYTPSTQTEVENSEIHHEQGLVAPEIKEENVTNENNKV 289

Query:   170 WEIGEL-------LRRARGNSAKDMHLPANELAV----TQTNSLTSHENNQKHEGKKDLK 218
             +E  +L       L+   G  ++   LP++   +    T+T  + S+  +    G ++ +
Sbjct:   290 FEAIDLPTKEDGDLKMLAGTDSETFQLPSSRTGILTPETETEMVISNTLHGIRHGLRESR 349

Query:   219 GTPWNLD-DWLKEKRNAAMIVATGIATMGFQAGVNPPNSSRLDASSFVAHNT 269
                  +  + L+  RN   +VA  IA++ F  G+NPP     D   F+   T
Sbjct:   350 IKEKEMQSEALQNARNTITVVAVLIASVTFTCGLNPPGGVYQDGH-FIGKAT 400

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 0.00019, P = 0.00019
 Identities = 72/283 (25%), Positives = 117/283 (41%)

Query:    10 AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDV-------------- 55
             AA  GH + +  +L   P LA  +D   ++ALH A+ +G     ++              
Sbjct:   231 AAKQGHLEVLKILLETFPNLAMTTDLSCTTALHTAATQGHIDVVNLLLETDSNLAKIAKN 290

Query:    56 DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
             +G+ ALH AA  GH++V++ L+   P       K   +T     +   ND   + ++   
Sbjct:   291 NGKTALHSAARMGHVEVVKSLIGKDPSIGFRTDKKG-QTALHMAVKGQNDGIVVELVKPD 349

Query:   116 VADKQIEI----WITHI-TYKSRA--IKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIK 168
             VA   +E        HI T K R   ++   +   I +N +N  G T  D+   S++ I 
Sbjct:   350 VAVLSVEDNKGNTPLHIATNKGRIKIVRCLVSFEGINLNPINKAGDTPLDV---SEK-IG 405

Query:   169 YWEIGELLRRARGNSAKDMHLPANELA-VTQTNSLTSHENNQKHEGKKDLKGTPWNLDDW 227
               E+  +L+ A   +AKD+  P N    + QT S   HE   + +  +        +   
Sbjct:   406 NAELVSVLKEAGAATAKDLGKPQNPAKQLKQTVSDIKHEVQSQLQQSRQTGVRVQKIAKR 465

Query:   228 LKEKR--------NAAMIVATGIATMGFQAGVNPPNSSRLDAS 262
             LK+          N+A +VA  IAT+ F A    P     D S
Sbjct:   466 LKKLHISGLNNAINSATVVAVLIATVAFAAIFTIPGQYEEDRS 508

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 0.00019, Sum P(2) = 0.00019
 Identities = 62/220 (28%), Positives = 93/220 (42%)

Query:    56 DGRNALHLAAMEGHIDVLEE-----------LVRAKPDA--ASAPLKSFL------ETRE 96
             DG   LHLAAM+  I +L+E           L  AK      +A  K+ L      E+ +
Sbjct:   217 DGFTPLHLAAMKCSIPILKEFSDKAPRYFDILTPAKETVFHLAAEHKNILAFYFMAESPD 276

Query:    97 GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
              + LL+  D  G T+LH AV      + I  ITY+          T I+++A N  G  A
Sbjct:   277 RNNLLHQVDRYGNTVLHTAVMSSCYSV-IVSITYE----------TTIDLSAKNNRGLKA 325

Query:   157 WDILAQSKRDIKYWEIGELLRRARGNSAKDMHLPANELAVTQTNSLTSHENNQKHE--GK 214
              D++     D  Y +I   LR       + +  P ++        L+ ++  Q  E   K
Sbjct:   326 VDLINVDDED--YSKISRWLR-FDAKQIRSLSDPNHQQGNKNMGVLSEYKKMQIFETPSK 382

Query:   215 KDLKGTPWNLDDWLKEKRNAAMIVATGIATMGFQAGVNPP 254
             ++ K       + L   RN   IVA  IA++ F  G+NPP
Sbjct:   383 RESKMHA----EALLNARNTITIVAVLIASVAFTCGINPP 418

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 0.00040, Sum P(2) = 0.00040
 Identities = 56/240 (23%), Positives = 100/240 (41%)

Query:    34 DSRKSSALHIASQKGKCSATD--VDGRNALHLAAMEGHIDVLEELV-RAKPDAASAPLKS 90
             +S+  S LH+A Q+G     +  +D ++ L         + +  L  R K   A   +  
Sbjct:   202 NSKGLSPLHLAVQRGSVIILEEFMD-KSPLSFCVRTPSKETVFHLAARNKNTDAFVFMAE 260

Query:    91 FLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVN 150
              L T     LL   D  G T+LH+A +          ++  S  I++      I++   N
Sbjct:   261 NLGT-SSPILLKKKDQQGNTVLHIAAS----------VSCGSPLIRYIVGKKIIDIRDRN 309

Query:   151 ANGFTAWDILAQSKRDIKYWEIGELLR-----RARGNSAK----DMHLPANE------LA 195
               G+ A+ +L +  +D ++  I   LR         +S K    + H+  +E      L 
Sbjct:   310 NMGYRAYHLLPRQAQDYEF--ISSYLRCDTKTSEEVDSKKAERNEPHIGHSEVIRLLKLI 367

Query:   196 VTQTNSLTSHENNQKHEGKKDLKGTPWNLD-DWLKEKRNAAMIVATGIATMGFQAGVNPP 254
                T+ +   + ++KH  K+  K     +  + L+  RN   IVA  IA++ +  G+NPP
Sbjct:   368 EISTSEIAERKKSKKHHVKRGHKSLEHEMHIEALQNARNTIAIVAVLIASVSYAGGINPP 427

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 0.00058, Sum P(2) = 0.00058
 Identities = 53/214 (24%), Positives = 92/214 (42%)

Query:    50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGM 109
             C   D DG   +H+AA EGH+ +++E ++  PD+    L +  +       +        
Sbjct:   280 CYVADDDGFTPIHMAAKEGHVRIIKEFLKHCPDSREL-LNNQCQNIFHVAAIAGKSKVVK 338

Query:   110 TILHLAVADKQI-EIWIT-----HITYKSR---AIKFFTTSTAIEVNAVNANGFTAWDIL 160
              +L L    + + E  I      H+  K R    +   T +  I + A+N  GFTA DI 
Sbjct:   339 YLLKLDEGKRMMNEQDINGNTPLHLATKHRYPIVVNMLTWNDGINLRALNNEGFTALDI- 397

Query:   161 AQSKRDIKYWEIGELLRRARGNSAKDMHLPANELAVTQTNSLTSHENNQKHEGKKDLKGT 220
             A++ +D   + + + L      SA   H P N + +T + S  S ++ +++         
Sbjct:   398 AETMKDNNAYVLYKRLIWMALVSAGAPHGP-NLIPLTVSQS--SKQSPERY--------- 445

Query:   221 PWNLDDWLKEKRNAAMIVATGIATMGFQAGVNPP 254
                     K+  N  M+ AT +AT+ F AG+  P
Sbjct:   446 --------KDSVNTLMVTATLVATVTFAAGLTLP 471

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	383
pfam13962	114	pfam13962, PGG, Domain of unknown function	5e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-12
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-11
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-04
smart00248	30	smart00248, ANK, ankyrin repeats	2e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.002

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 67.5 bits (166), Expect = 5e-14
 Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 19/114 (16%)

Query: 225 DDWLKEKRNAAMIVATGIATMGFQAGVNPPNSSRLDASS-----------------FVAH 267
            +WL++ RN+ ++VAT IAT+ F AG  PP     D                    F   
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 268 NTLGFLSSLSVILLLLFSLPINRT--LFVWIVMIMMGVAIGEMAWVYAVSIDVI 319
           NT+ F++SL  ++LLL+ +P        +  ++ ++ +++  +   +A     +
Sbjct: 61  NTIAFVASLVAVILLLYIVPSFSRRLPRLLALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 62.4 bits (152), Expect = 4e-12
 Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 43/145 (29%)

Query: 34  DSRKSSALHIASQKGKCS-------------ATDVDGRNALHLAAMEGHIDVLEELVRAK 80
           D    + LH+A+  G                A D DGR  LHLAA  GH+++++ L+   
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63

Query: 81  PDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTT 140
            D                  +NA D +G T LHLA  +  +++           +K    
Sbjct: 64  AD------------------VNARDKDGNTPLHLAARNGNLDV-----------VKLLLK 94

Query: 141 STAIEVNAVNANGFTAWDILAQSKR 165
             A  VNA + +G T   + A++  
Sbjct: 95  HGAD-VNARDKDGRTPLHLAAKNGH 118

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 35/136 (25%)

Query: 1   MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS--------- 51
            T L LA +    GH + V  +L    ++  K D+   + LH+A++ G            
Sbjct: 8   RTPLHLAASN---GHLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVKLLLEKG 63

Query: 52  ----ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDN 107
               A D DG   LHLAA  G++DV++ L++   D                  +NA D +
Sbjct: 64  ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD------------------VNARDKD 105

Query: 108 GMTILHLAVADKQIEI 123
           G T LHLA  +  +E+
Sbjct: 106 GRTPLHLAAKNGHLEV 121

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 30/105 (28%)

Query: 52  ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTI 111
           A D DGR  LHLAA  GH++V++ L+    D                  +NA D++G T 
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGAD------------------VNAKDNDGRTP 43

Query: 112 LHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
           LHLA  +  +EI           +K      A  VNA + +G T 
Sbjct: 44  LHLAAKNGHLEI-----------VKLLLEKGAD-VNARDKDGNTP 76

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 16/86 (18%)

Query: 10 AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATDVD 56
          AA  G+ + V  +L +    A  +     +ALH+A++ G               +A D D
Sbjct: 4  AAKNGNLELVKLLLEKG---ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60

Query: 57 GRNALHLAAMEGHIDVLEELVRAKPD 82
          G  ALHLAA  G++++++ L+    D
Sbjct: 61 GNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 17/90 (18%)

Query: 1   MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK----------- 49
            T L LA   A  GH + V ++L +K       D   ++ LH+A++ G            
Sbjct: 41  RTPLHLA---AKNGHLEIV-KLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG 96

Query: 50  --CSATDVDGRNALHLAAMEGHIDVLEELV 77
              +A D DGR  LHLAA  GH++V++ L+
Sbjct: 97  ADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 29/94 (30%)

Query: 41  LHIASQKGKCSA--------TDVDGRN---ALHLAAMEGHIDVLEELVRAKPDAASAPLK 89
           LH+A++ G             DV+  +   ALHLAA  G++++++ L+    D       
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGAD------- 53

Query: 90  SFLETREGSELLNANDDNGMTILHLAVADKQIEI 123
                      +NA D +G T LHLA  +  +EI
Sbjct: 54  -----------VNAKDKDGNTALHLAARNGNLEI 76

Length = 91

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 56 DGRNALHLAAMEGHIDVLEELVRAKPD 82
          DG   LHLAA  GH++V++ L+ A  D
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEAGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 56 DGRNALHLAAMEGHIDVLEELVRAKPD 82
          DGR  LHLAA  G+++V++ L+    D
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLDKGAD 27

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.8 bits (86), Expect = 8e-04
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 18/67 (26%)

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
           GR ALH AA+ G +++++ L+    D                  +N  D++G T LH+A 
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVD------------------INRTDEDGNTALHIAA 42

Query: 117 ADKQIEI 123
            +  +E+
Sbjct: 43  ENGNLEV 49

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 39.0 bits (90), Expect = 0.002
 Identities = 36/174 (20%), Positives = 57/174 (32%), Gaps = 43/174 (24%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSAT---------------- 53
           AA  G +  V  +L    ++  K D+   + LH+A+  G                     
Sbjct: 80  AASKGDDKIVKLLLASGADVNAK-DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLD 138

Query: 54  -----DVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNG 108
                D DG   LH AA+ G  D++E L+ A  D                   N+ +  G
Sbjct: 139 VNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD------------------PNSRNSYG 180

Query: 109 MTILHLAVADKQIEIWITHITY---KSRAIKFFTTSTAIEVNAVNANGFTAWDI 159
           +T L  A  + +IE+    +      S             V+  N    T+  I
Sbjct: 181 VTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSLII 234

Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	383
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.95
PHA02791	284	ankyrin-like protein; Provisional	99.93
PHA02878	477	ankyrin repeat protein; Provisional	99.92
PHA02791	284	ankyrin-like protein; Provisional	99.92
PHA02875	413	ankyrin repeat protein; Provisional	99.91
KOG0510	929	consensus Ankyrin repeat protein [General function	99.91
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.91
PHA03100	480	ankyrin repeat protein; Provisional	99.91
PHA02875	413	ankyrin repeat protein; Provisional	99.9
PHA02946	446	ankyin-like protein; Provisional	99.9
PHA02874	434	ankyrin repeat protein; Provisional	99.9
PHA02798	489	ankyrin-like protein; Provisional	99.9
PHA03095	471	ankyrin-like protein; Provisional	99.9
PHA02989	494	ankyrin repeat protein; Provisional	99.9
PHA02874	434	ankyrin repeat protein; Provisional	99.9
PHA02859	209	ankyrin repeat protein; Provisional	99.89
PHA02946	446	ankyin-like protein; Provisional	99.89
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.89
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.89
PHA02876	682	ankyrin repeat protein; Provisional	99.89
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.89
PHA03100	480	ankyrin repeat protein; Provisional	99.88
PHA02859	209	ankyrin repeat protein; Provisional	99.88
PHA03095	471	ankyrin-like protein; Provisional	99.87
PHA02795	437	ankyrin-like protein; Provisional	99.87
PF13962	113	PGG: Domain of unknown function	99.87
PHA02917	661	ankyrin-like protein; Provisional	99.87
PHA02876	682	ankyrin repeat protein; Provisional	99.87
PHA02878	477	ankyrin repeat protein; Provisional	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.86
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.86
PHA02743	166	Viral ankyrin protein; Provisional	99.84
PHA02741	169	hypothetical protein; Provisional	99.84
PHA02989	494	ankyrin repeat protein; Provisional	99.83
KOG0510	929	consensus Ankyrin repeat protein [General function	99.83
PHA02798	489	ankyrin-like protein; Provisional	99.83
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.82
KOG0508	615	consensus Ankyrin repeat protein [General function	99.82
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.82
KOG0514	452	consensus Ankyrin repeat protein [General function	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.8
PHA02743	166	Viral ankyrin protein; Provisional	99.79
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.79
KOG0508	615	consensus Ankyrin repeat protein [General function	99.78
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.77
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.76
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.75
PHA02730	672	ankyrin-like protein; Provisional	99.75
PHA02884	300	ankyrin repeat protein; Provisional	99.75
PHA02792	631	ankyrin-like protein; Provisional	99.75
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.75
PHA02730	672	ankyrin-like protein; Provisional	99.73
PHA02741	169	hypothetical protein; Provisional	99.73
PHA02795	437	ankyrin-like protein; Provisional	99.73
PHA02792	631	ankyrin-like protein; Provisional	99.72
PHA02917	661	ankyrin-like protein; Provisional	99.72
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.72
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.72
PHA02736	154	Viral ankyrin protein; Provisional	99.71
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.7
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.68
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.68
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.66
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.65
KOG0514	452	consensus Ankyrin repeat protein [General function	99.62
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.61
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.6
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.6
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.59
PHA02884	300	ankyrin repeat protein; Provisional	99.56
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.51
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.45
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.45
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.43
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.43
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.41
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.4
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.39
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.34
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.33
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.32
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.29
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.28
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.13
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.12
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.07
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.02
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.82
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.8
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.77
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.73
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.7
PF13606	30	Ank_3: Ankyrin repeat	98.65
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.6
PF13606	30	Ank_3: Ankyrin repeat	98.57
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.57
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.48
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.37
KOG0522	560	consensus Ankyrin repeat protein [General function	98.34
KOG0522	560	consensus Ankyrin repeat protein [General function	98.31
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.31
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.3
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.18
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.1
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.06
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.03
KOG2384	223	consensus Major histocompatibility complex protein	97.83
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.79
KOG0511	516	consensus Ankyrin repeat protein [General function	97.66
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.51
KOG2384	223	consensus Major histocompatibility complex protein	97.49
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.36
KOG0511	516	consensus Ankyrin repeat protein [General function	97.26
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.67
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.09
KOG2505	591	consensus Ankyrin repeat protein [General function	95.98
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	95.56
KOG2505	591	consensus Ankyrin repeat protein [General function	94.78
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.82
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	84.93

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.2e-30  Score=211.05  Aligned_cols=147  Identities=27%  Similarity=0.372  Sum_probs=128.9

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC--------------ccccCCCCCcHHHHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------CSATDVDGRNALHLAAM   66 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~--------------~~~~d~~G~tpLh~A~~   66 (383)
                      |||||+||.   .|+.+++++|+++-.-..+..|..||||||.||+.|+              ++..++.|+|+||+|+.
T Consensus        39 Rt~LHwa~S---~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAag  115 (226)
T KOG4412|consen   39 RTPLHWACS---FGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAG  115 (226)
T ss_pred             Cceeeeeee---cCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhc
Confidence            689999954   8999999999964333347779999999999999998              67778889999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccc
Q 038344           67 EGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEV  146 (383)
Q Consensus        67 ~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~  146 (383)
                      .|+.||+.+|+++|+.                  ++.+|..|.||||-|+..|+.++           +++|+.. |+.+
T Consensus       116 K~r~eIaqlLle~ga~------------------i~~kD~~~qtplHRAAavGklkv-----------ie~Li~~-~a~~  165 (226)
T KOG4412|consen  116 KGRLEIAQLLLEKGAL------------------IRIKDKQGQTPLHRAAAVGKLKV-----------IEYLISQ-GAPL  165 (226)
T ss_pred             CChhhHHHHHHhcCCC------------------CcccccccCchhHHHHhccchhh-----------HHHHHhc-CCCC
Confidence            9999999999998876                  89999999999999999999999           9999996 8999


Q ss_pred             cccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          147 NAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       147 ~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      |.+|+.|+||||.|.-    .++.+...+|+++||+..
T Consensus       166 n~qDk~G~TpL~~al~----e~~~d~a~lLV~~gAd~~  199 (226)
T KOG4412|consen  166 NTQDKYGFTPLHHALA----EGHPDVAVLLVRAGADTD  199 (226)
T ss_pred             CcccccCccHHHHHHh----ccCchHHHHHHHhcccee
Confidence            9999999999999955    467889999999998873

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.5e-28  Score=196.72  Aligned_cols=147  Identities=23%  Similarity=0.288  Sum_probs=130.4

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccC-CCCCCcHHHHHHHcCC--------------ccccCCCCCcHHHHHHH
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKS-DSRKSSALHIASQKGK--------------CSATDVDGRNALHLAAM   66 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~-d~~g~TpLh~Aa~~g~--------------~~~~d~~G~tpLh~A~~   66 (383)
                      ++.+..|.   .....-++.+++..++-.+.+ |.+|+|||||||+.|+              ++-+|..|+||||+|+.
T Consensus         5 ~~~~~~~~---~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s   81 (226)
T KOG4412|consen    5 SLGKAICE---NCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAAS   81 (226)
T ss_pred             chHHHHHh---hchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhh
Confidence            45666654   666677999999998443555 4599999999999999              56678899999999999


Q ss_pred             cCCHHHHHHHHHc-CCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccc
Q 038344           67 EGHIDVLEELVRA-KPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIE  145 (383)
Q Consensus        67 ~g~~~iv~~Ll~~-~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d  145 (383)
                      .|+.|+|+.|+.+ ++|                  +|..++.|.||||+|+.+|..++           +++|+++ |+.
T Consensus        82 ~g~~evVk~Ll~r~~ad------------------vna~tn~G~T~LHyAagK~r~eI-----------aqlLle~-ga~  131 (226)
T KOG4412|consen   82 NGNDEVVKELLNRSGAD------------------VNATTNGGQTCLHYAAGKGRLEI-----------AQLLLEK-GAL  131 (226)
T ss_pred             cCcHHHHHHHhcCCCCC------------------cceecCCCcceehhhhcCChhhH-----------HHHHHhc-CCC
Confidence            9999999999997 776                  99999999999999999999999           9999996 999


Q ss_pred             ccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          146 VNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       146 ~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      ++++|..|+||||-|+.    .+..+++++|+..|+..+.
T Consensus       132 i~~kD~~~qtplHRAAa----vGklkvie~Li~~~a~~n~  167 (226)
T KOG4412|consen  132 IRIKDKQGQTPLHRAAA----VGKLKVIEYLISQGAPLNT  167 (226)
T ss_pred             CcccccccCchhHHHHh----ccchhhHHHHHhcCCCCCc
Confidence            99999999999999999    8999999999999987754

>PHA02791 ankyrin-like protein; Provisional

Probab=99.93  E-value=2.5e-25  Score=202.94  Aligned_cols=159  Identities=17%  Similarity=0.129  Sum_probs=132.2

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||+|+.   .|+.++++.|++.+++. +..  +|+||||+|+..|+             ++.+|.+|+||||+|+..
T Consensus        31 ~TpLh~Aa~---~g~~eiv~~Ll~~ga~~-n~~--d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~  104 (284)
T PHA02791         31 HSALYYAIA---DNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDS  104 (284)
T ss_pred             CcHHHHHHH---cCCHHHHHHHHHCcCCC-cCC--CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            589999954   99999999999999876 443  47899999999988             567888999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCc-------h------------HHHHHhhccCCcccccCCC-CCCCcHHHHHHHcCChhHHHHh
Q 038344           68 GHIDVLEELVRAKPDAAS-------A------------PLKSFLETREGSELLNAND-DNGMTILHLAVADKQIEIWITH  127 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~-------~------------~l~~l~~~~~~~~~~n~~d-~~g~TpLh~A~~~~~~~~~~~~  127 (383)
                      |+.+++++|+++|++...       +            .+++|++.   +  .+..| ..|+||||+|+..|+.++    
T Consensus       105 g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~---~--~~~~d~~~g~TpLh~Aa~~g~~ei----  175 (284)
T PHA02791        105 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE---I--PSTFDLAILLSCIHITIKNGHVDM----  175 (284)
T ss_pred             CCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhc---C--CcccccccCccHHHHHHHcCCHHH----
Confidence            999999999999887531       2            34444442   1  12233 358999999999999999    


Q ss_pred             hhchhhHHHHhhhcccccccccccCCCCH-HHHHHhccCCcchhhHHHHHHHhcCCCCCC
Q 038344          128 ITYKSRAIKFFTTSTAIEVNAVNANGFTA-WDILAQSKRDIKYWEIGELLRRARGNSAKD  186 (383)
Q Consensus       128 l~~~~~~v~~Ll~~~g~d~~~~n~~G~Tp-L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~  186 (383)
                             +++|++. |+|+|.+|..|.|| ||+|+.    .++.+++++|+++|++.+..
T Consensus       176 -------v~lLL~~-gAd~n~~d~~g~t~~L~~Aa~----~~~~e~v~lLl~~Ga~in~~  223 (284)
T PHA02791        176 -------MILLLDY-MTSTNTNNSLLFIPDIKLAID----NKDLEMLQALFKYDINIYSV  223 (284)
T ss_pred             -------HHHHHHC-CCCCCcccCCCCChHHHHHHH----cCCHHHHHHHHHCCCCCccC
Confidence                   9999996 99999999999987 999999    89999999999999998653

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.92  E-value=2.6e-24  Score=212.75  Aligned_cols=148  Identities=23%  Similarity=0.262  Sum_probs=119.3

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------------------------
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------------------------   49 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------------------------   49 (383)
                      .||||.|+   ..|+.++|+.|+++|+++ +..|.+|+||||+||..|+                               
T Consensus        38 ~tPLh~A~---~~g~~e~vk~Ll~~gadv-n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~  113 (477)
T PHA02878         38 FIPLHQAV---EARNLDVVKSLLTRGHNV-NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRN  113 (477)
T ss_pred             cchHHHHH---HcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCC
Confidence            48999995   599999999999999998 8899999999999998765                               


Q ss_pred             ----------------------------------------------ccccCCC-CCcHHHHHHHcCCHHHHHHHHHcCCC
Q 038344           50 ----------------------------------------------CSATDVD-GRNALHLAAMEGHIDVLEELVRAKPD   82 (383)
Q Consensus        50 ----------------------------------------------~~~~d~~-G~tpLh~A~~~g~~~iv~~Ll~~~~~   82 (383)
                                                                    ++..|.+ |.||||+|+.+|+.+++++|+++|++
T Consensus       114 ~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad  193 (477)
T PHA02878        114 VEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN  193 (477)
T ss_pred             HHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC
Confidence                                                          1223344 77777777777777777777777666


Q ss_pred             CCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHh
Q 038344           83 AASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQ  162 (383)
Q Consensus        83 ~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~  162 (383)
                                        +|.+|.+|+||||+|+..|+.++           +++|++. |++++.+|..|+||||+|+.
T Consensus       194 ------------------~n~~d~~g~tpLh~A~~~~~~~i-----------v~~Ll~~-ga~in~~d~~g~TpLh~A~~  243 (477)
T PHA02878        194 ------------------VNIPDKTNNSPLHHAVKHYNKPI-----------VHILLEN-GASTDARDKCGNTPLHISVG  243 (477)
T ss_pred             ------------------CCCcCCCCCCHHHHHHHhCCHHH-----------HHHHHHc-CCCCCCCCCCCCCHHHHHHH
Confidence                              78888888888888888888888           8888885 88888888888888888886


Q ss_pred             ccCCcchhhHHHHHHHhcCCCCC
Q 038344          163 SKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       163 ~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      .   .++.+++++|+++|++.+.
T Consensus       244 ~---~~~~~iv~~Ll~~gadvn~  263 (477)
T PHA02878        244 Y---CKDYDILKLLLEHGVDVNA  263 (477)
T ss_pred             h---cCCHHHHHHHHHcCCCCCc
Confidence            1   2467888888888887753

>PHA02791 ankyrin-like protein; Provisional

Probab=99.92  E-value=5.9e-24  Score=193.90  Aligned_cols=148  Identities=17%  Similarity=0.123  Sum_probs=99.0

Q ss_pred             cCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-----------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 038344           13 LGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-----------CSATDVDGRNALHLAAMEGHIDVLEELVRAKP   81 (383)
Q Consensus        13 ~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-----------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~   81 (383)
                      .++.+++++|++++++   ..|.+|+||||+|+..|+           .+....+|+||||+|+..|+.+++++|+++|+
T Consensus         9 ~~~~~~~~~Lis~~a~---~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~Ga   85 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF---KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGM   85 (284)
T ss_pred             cCHHHHHHHHHhCCCC---CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHCCC
Confidence            4778999999998874   579999999999999999           12223468999999999999999999999988


Q ss_pred             CCCch------------------HHHHHhhccCCcccccCCCCCCC-cHHHHHHHcCChhHHHHhhhchhhHHHHhhhcc
Q 038344           82 DAASA------------------PLKSFLETREGSELLNANDDNGM-TILHLAVADKQIEIWITHITYKSRAIKFFTTST  142 (383)
Q Consensus        82 ~~~~~------------------~l~~l~~~~~~~~~~n~~d~~g~-TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~  142 (383)
                      +....                  .+++|++   .++.++.+|..|+ ||||+|+..|+.++           +++|+++ 
T Consensus        86 dvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~---~gadin~~~~~g~~TpL~~Aa~~g~~ei-----------vk~LL~~-  150 (284)
T PHA02791         86 DDSQFDDKGNTALYYAVDSGNMQTVKLFVK---KNWRLMFYGKTGWKTSFYHAVMLNDVSI-----------VSYFLSE-  150 (284)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH---CCCCcCccCCCCCcHHHHHHHHcCCHHH-----------HHHHHhc-
Confidence            73321                  2333333   3444555555553 55555555555555           6666654 


Q ss_pred             cccccccc-cCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          143 AIEVNAVN-ANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       143 g~d~~~~n-~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      +.+.  .| ..|.||||+|+.    .++.+++++|+++|++++
T Consensus       151 ~~~~--~d~~~g~TpLh~Aa~----~g~~eiv~lLL~~gAd~n  187 (284)
T PHA02791        151 IPST--FDLAILLSCIHITIK----NGHVDMMILLLDYMTSTN  187 (284)
T ss_pred             CCcc--cccccCccHHHHHHH----cCCHHHHHHHHHCCCCCC
Confidence            3221  12 235666666666    556666666666666553

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.91  E-value=5.8e-24  Score=206.71  Aligned_cols=162  Identities=20%  Similarity=0.143  Sum_probs=126.9

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      |++||.|+   ..|+.+++++|++.|+++ +..+.+|.||||+|+..|+             .+..+.+|.||||.|+..
T Consensus         3 ~~~L~~A~---~~g~~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~   78 (413)
T PHA02875          3 QVALCDAI---LFGELDIARRLLDIGINP-NFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEE   78 (413)
T ss_pred             chHHHHHH---HhCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHC
Confidence            56777774   478888888888888877 6677788888888888877             344556777888888888


Q ss_pred             CCHHHHHHHHHcCCCCCc-------h------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhh
Q 038344           68 GHIDVLEELVRAKPDAAS-------A------------PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHI  128 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~-------~------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l  128 (383)
                      |+.+++++|++.|++...       +            .+++|++   .|++++.+|.+|.||||+|+..|+.++     
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~---~gad~~~~~~~g~tpLh~A~~~~~~~~-----  150 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIA---RGADPDIPNTDKFSPLHLAVMMGDIKG-----  150 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHh---CCCCCCCCCCCCCCHHHHHHHcCCHHH-----
Confidence            888888888877764321       1            3334443   566788889999999999999999998     


Q ss_pred             hchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          129 TYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       129 ~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                            +++|++. |++++.+|..|.||||+|+.    .++.+++++|+++|+++..
T Consensus       151 ------v~~Ll~~-g~~~~~~d~~g~TpL~~A~~----~g~~eiv~~Ll~~ga~~n~  196 (413)
T PHA02875        151 ------IELLIDH-KACLDIEDCCGCTPLIIAMA----KGDIAICKMLLDSGANIDY  196 (413)
T ss_pred             ------HHHHHhc-CCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHhCCCCCCc
Confidence                  8999885 89999999999999999998    7888899999999988753

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=1.5e-22  Score=196.87  Aligned_cols=164  Identities=23%  Similarity=0.290  Sum_probs=137.3

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------------------------
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------------------------   49 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------------------------   49 (383)
                      +||||+||   ..++.|..+.|++.++++ .+.|.+|++|+|.|+..|.                               
T Consensus       155 ~TpLh~A~---~~~~~E~~k~Li~~~a~~-~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLh  230 (929)
T KOG0510|consen  155 FTPLHLAA---RKNKVEAKKELINKGADP-CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLH  230 (929)
T ss_pred             CchhhHHH---hcChHHHHHHHHhcCCCC-CcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchh
Confidence            48999984   488888778888888887 6678888888888887776                               


Q ss_pred             -----------------------------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCch--------
Q 038344           50 -----------------------------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA--------   86 (383)
Q Consensus        50 -----------------------------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~--------   86 (383)
                                                         ++..|++|.||||+|++.|+.+.++.|+..|++....        
T Consensus       231 lAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spL  310 (929)
T KOG0510|consen  231 LAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPL  310 (929)
T ss_pred             hhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCch
Confidence                                               4667899999999999999999999999999886544        


Q ss_pred             ----------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccc---ccccCC
Q 038344           87 ----------PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVN---AVNANG  153 (383)
Q Consensus        87 ----------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~---~~n~~G  153 (383)
                                +++.|++ .....++|..|-.|+||||+|++.|+.++           ++.|+++ |++.+   ..|.+|
T Consensus       311 H~AA~yg~~ntv~rLL~-~~~~rllne~D~~g~tpLHlaa~~gH~~v-----------~qlLl~~-GA~~~~~~e~D~dg  377 (929)
T KOG0510|consen  311 HFAAIYGRINTVERLLQ-ESDTRLLNESDLHGMTPLHLAAKSGHDRV-----------VQLLLNK-GALFLNMSEADSDG  377 (929)
T ss_pred             HHHHHcccHHHHHHHHh-CcCccccccccccCCCchhhhhhcCHHHH-----------HHHHHhc-ChhhhcccccccCC
Confidence                      4555555 34556788899999999999999999999           9999997 88876   559999


Q ss_pred             CCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          154 FTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       154 ~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      +||||.|+.    .++..+++.|+.+|++...
T Consensus       378 ~TaLH~Aa~----~g~~~av~~Li~~Ga~I~~  405 (929)
T KOG0510|consen  378 NTALHLAAK----YGNTSAVQKLISHGADIGV  405 (929)
T ss_pred             chhhhHHHH----hccHHHHHHHHHcCCceee
Confidence            999999999    8999999999999999843

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.91  E-value=1.3e-23  Score=200.49  Aligned_cols=141  Identities=24%  Similarity=0.317  Sum_probs=76.3

Q ss_pred             HHHHHHcCCHHHHHHHHhc-CCcccccCCCCCCcHHHHHHHcCC-------------ccccC-CCCCcHHHHHHHcCCHH
Q 038344            7 AVAAALLGHEDFVNEILCQ-KPELARKSDSRKSSALHIASQKGK-------------CSATD-VDGRNALHLAAMEGHID   71 (383)
Q Consensus         7 A~~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d-~~G~tpLh~A~~~g~~~   71 (383)
                      .+.|++.|..+.|+.+++. +.++ +..|.+|.|+|||||.+++             +|..+ .-|.||||+|+++|+..
T Consensus        48 ~v~A~q~G~l~~v~~lve~~g~~v-~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~  126 (600)
T KOG0509|consen   48 IVKATQYGELETVKELVESEGESV-NNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHIS  126 (600)
T ss_pred             hhhHhhcchHHHHHHHHhhcCcCC-CCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHH
Confidence            3444556666666666666 3333 5556666666666666665             33333 33556666666666666


Q ss_pred             HHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccccccc
Q 038344           72 VLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNA  151 (383)
Q Consensus        72 iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~  151 (383)
                      ++++|+++|+|                  ++.+|.+|.||||+|++.++.-.           +-+|+.+ |+|+|.+|+
T Consensus       127 vv~lLlqhGAd------------------pt~~D~~G~~~lHla~~~~~~~~-----------vayll~~-~~d~d~~D~  176 (600)
T KOG0509|consen  127 VVDLLLQHGAD------------------PTLKDKQGLTPLHLAAQFGHTAL-----------VAYLLSK-GADIDLRDN  176 (600)
T ss_pred             HHHHHHHcCCC------------------CceecCCCCcHHHHHHHhCchHH-----------HHHHHHh-cccCCCcCC
Confidence            66666666665                  44455555555555555555544           4444443 455555555


Q ss_pred             CCCCHHHHHHhccCCcchhhHHHHHHHhcCC
Q 038344          152 NGFTAWDILAQSKRDIKYWEIGELLRRARGN  182 (383)
Q Consensus       152 ~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~  182 (383)
                      +|+||||+|+.    .+....++.|++.|+.
T Consensus       177 ~grTpLmwAay----kg~~~~v~~LL~f~a~  203 (600)
T KOG0509|consen  177 NGRTPLMWAAY----KGFALFVRRLLKFGAS  203 (600)
T ss_pred             CCCCHHHHHHH----hcccHHHHHHHHhccc
Confidence            55555555544    3333334444444443

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.1e-23  Score=208.71  Aligned_cols=163  Identities=25%  Similarity=0.261  Sum_probs=129.5

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcC--C-------------ccccCCCCCcHHHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG--K-------------CSATDVDGRNALHLAA   65 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g--~-------------~~~~d~~G~tpLh~A~   65 (383)
                      .||||+|+. ...|+.++++.|++.|+++ +..|..|.||||+|+..|  +             ++.+|.+|.||||+|+
T Consensus       107 ~tpL~~A~~-~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~  184 (480)
T PHA03100        107 ITPLLYAIS-KKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAV  184 (480)
T ss_pred             CchhhHHHh-cccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHH
Confidence            478888841 1478888888888888887 777888888888888888  5             5567778888888888


Q ss_pred             HcCCHHHHHHHHHcCCCCC------------ch--------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcC
Q 038344           66 MEGHIDVLEELVRAKPDAA------------SA--------------PLKSFLETREGSELLNANDDNGMTILHLAVADK  119 (383)
Q Consensus        66 ~~g~~~iv~~Ll~~~~~~~------------~~--------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~  119 (383)
                      ..|+.+++++|+++|++..            .+              .+++|++   .|.++|.+|..|+||||+|+..|
T Consensus       185 ~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~---~g~din~~d~~g~TpL~~A~~~~  261 (480)
T PHA03100        185 EKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS---YGVPINIKDVYGFTPLHYAVYNN  261 (480)
T ss_pred             HhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH---cCCCCCCCCCCCCCHHHHHHHcC
Confidence            8888888888888887754            22              2333333   56778888888999999999888


Q ss_pred             ChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          120 QIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       120 ~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      +.++           +++|++. |+|++.+|..|.||+|+|+.    .++.+++++|+++|++..
T Consensus       262 ~~~i-----------v~~Ll~~-gad~n~~d~~g~tpl~~A~~----~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        262 NPEF-----------VKYLLDL-GANPNLVNKYGDTPLHIAIL----NNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             CHHH-----------HHHHHHc-CCCCCccCCCCCcHHHHHHH----hCCHHHHHHHHhcCCCHH
Confidence            8888           8888885 88888888899999999888    777888889988888763

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.90  E-value=2.9e-23  Score=201.83  Aligned_cols=162  Identities=20%  Similarity=0.250  Sum_probs=141.1

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC--------------ccccCCCCCcHHHHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------CSATDVDGRNALHLAAM   66 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~--------------~~~~d~~G~tpLh~A~~   66 (383)
                      +||||+|+   ..|+.++++.|++.|+++ +..+.+|.||||.|+..|+              .+..+.+|.||||+|+.
T Consensus        36 ~tpL~~A~---~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  111 (413)
T PHA02875         36 ISPIKLAM---KFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATI  111 (413)
T ss_pred             CCHHHHHH---HcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHH
Confidence            58999995   499999999999999887 6778889999999999998              13446689999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCch------------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhh
Q 038344           67 EGHIDVLEELVRAKPDAASA------------------PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHI  128 (383)
Q Consensus        67 ~g~~~iv~~Ll~~~~~~~~~------------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l  128 (383)
                      .|+.+++++|+++|++....                  .++.|++   .+..++.+|..|+||||+|+..|+.++     
T Consensus       112 ~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~---~g~~~~~~d~~g~TpL~~A~~~g~~ei-----  183 (413)
T PHA02875        112 LKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID---HKACLDIEDCCGCTPLIIAMAKGDIAI-----  183 (413)
T ss_pred             hCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh---cCCCCCCCCCCCCCHHHHHHHcCCHHH-----
Confidence            99999999999999886432                  3444444   677899999999999999999999999     


Q ss_pred             hchhhHHHHhhhcccccccccccCCC-CHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          129 TYKSRAIKFFTTSTAIEVNAVNANGF-TAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       129 ~~~~~~v~~Ll~~~g~d~~~~n~~G~-TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                            +++|++. |++++..+.+|. ||+|+|+.    .++.+++++|+++|++++.
T Consensus       184 ------v~~Ll~~-ga~~n~~~~~~~~t~l~~A~~----~~~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        184 ------CKMLLDS-GANIDYFGKNGCVAALCYAIE----NNKIDIVRLFIKRGADCNI  230 (413)
T ss_pred             ------HHHHHhC-CCCCCcCCCCCCchHHHHHHH----cCCHHHHHHHHHCCcCcch
Confidence                  9999996 999999998875 78999999    8889999999999999853

>PHA02946 ankyin-like protein; Provisional

Probab=99.90  E-value=5e-23  Score=200.61  Aligned_cols=70  Identities=19%  Similarity=0.192  Sum_probs=40.0

Q ss_pred             CcccccCCCCCCCcHHHHHHHcC--ChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcch-hhHH
Q 038344           97 GSELLNANDDNGMTILHLAVADK--QIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKY-WEIG  173 (383)
Q Consensus        97 ~~~~~n~~d~~g~TpLh~A~~~~--~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~-~~i~  173 (383)
                      .|+++|.+|.+|+||||+|+..+  +.++           +++|+.  |+++|.+|.+|.||||+|+.    .++ .+++
T Consensus       197 ~Gadin~~d~~G~TpLH~Aa~~~~~~~~i-----------v~lLl~--gadin~~d~~G~TpLh~A~~----~~~~~~~~  259 (446)
T PHA02946        197 LGISPSKPDHDGNTPLHIVCSKTVKNVDI-----------INLLLP--STDVNKQNKFGDSPLTLLIK----TLSPAHLI  259 (446)
T ss_pred             cCCCCcccCCCCCCHHHHHHHcCCCcHHH-----------HHHHHc--CCCCCCCCCCCCCHHHHHHH----hCChHHHH
Confidence            45556666666666666666554  4455           555552  56666666666666666665    332 3556


Q ss_pred             HHHHHhcCCC
Q 038344          174 ELLRRARGNS  183 (383)
Q Consensus       174 ~~L~~~ga~~  183 (383)
                      ++|+++|+..
T Consensus       260 ~~Ll~~g~~~  269 (446)
T PHA02946        260 NKLLSTSNVI  269 (446)
T ss_pred             HHHHhCCCCC
Confidence            6666665543

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.90  E-value=4.6e-23  Score=201.57  Aligned_cols=145  Identities=21%  Similarity=0.288  Sum_probs=99.2

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC--------------------------------
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------------------------   49 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~--------------------------------   49 (383)
                      ||||.|++   .|+.+++++|++.|+++ +..+..|.||||.|+..|+                                
T Consensus        37 tpL~~A~~---~g~~~iv~~Ll~~Ga~~-n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~  112 (434)
T PHA02874         37 TPLIDAIR---SGDAKIVELFIKHGADI-NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILD  112 (434)
T ss_pred             CHHHHHHH---cCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHH
Confidence            66666633   66666666666666665 5556666666666666665                                


Q ss_pred             ----ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHH
Q 038344           50 ----CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWI  125 (383)
Q Consensus        50 ----~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~  125 (383)
                          ++.+|.+|.||||+|+..|+.+++++|+++|++                  +|.+|.+|+||||+|+..|+.++  
T Consensus       113 ~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad------------------~n~~d~~g~tpLh~A~~~~~~~i--  172 (434)
T PHA02874        113 CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD------------------VNIEDDNGCYPIHIAIKHNFFDI--  172 (434)
T ss_pred             CcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC------------------CCCcCCCCCCHHHHHHHCCcHHH--
Confidence                123455666666666666666666666666665                  66677777777777777777777  


Q ss_pred             HhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          126 THITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       126 ~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                               +++|++. |++++..|..|.||||+|+.    .++.+++++|+++|++..
T Consensus       173 ---------v~~Ll~~-g~~~n~~~~~g~tpL~~A~~----~g~~~iv~~Ll~~g~~i~  217 (434)
T PHA02874        173 ---------IKLLLEK-GAYANVKDNNGESPLHNAAE----YGDYACIKLLIDHGNHIM  217 (434)
T ss_pred             ---------HHHHHHC-CCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHhCCCCCc
Confidence                     7777775 77777777777777777777    667777777777777653

>PHA02798 ankyrin-like protein; Provisional

Probab=99.90  E-value=5.3e-23  Score=203.91  Aligned_cols=167  Identities=18%  Similarity=0.175  Sum_probs=138.3

Q ss_pred             CChHHHHHHH--HHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC----------------ccccCCCCCcHHH
Q 038344            1 MTILQLAVAA--ALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK----------------CSATDVDGRNALH   62 (383)
Q Consensus         1 ~TpLh~A~~A--a~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~----------------~~~~d~~G~tpLh   62 (383)
                      .||||.++..  ...++.++++.|++.|+++ +..|.+|+||||+|+..+.                ++.+|.+|.||||
T Consensus        72 ~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~  150 (489)
T PHA02798         72 STPLCTILSNIKDYKHMLDIVKILIENGADI-NKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQ  150 (489)
T ss_pred             CChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHH
Confidence            4899998641  1236689999999999997 8889999999999998763                6778899999999


Q ss_pred             HHHHcCC---HHHHHHHHHcCCCCCch-----------------------HHHHHhhcc---------------------
Q 038344           63 LAAMEGH---IDVLEELVRAKPDAASA-----------------------PLKSFLETR---------------------   95 (383)
Q Consensus        63 ~A~~~g~---~~iv~~Ll~~~~~~~~~-----------------------~l~~l~~~~---------------------   95 (383)
                      +|++.|+   .+++++|+++|++....                       .+++|++.+                     
T Consensus       151 ~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l  230 (489)
T PHA02798        151 VYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSL  230 (489)
T ss_pred             HHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHH
Confidence            9999988   89999999998875321                       233444322                     


Q ss_pred             ---------------CCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHH
Q 038344           96 ---------------EGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDIL  160 (383)
Q Consensus        96 ---------------~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A  160 (383)
                                     ..+.++|.+|..|+||||+|+..|+.++           +++|++. |+|+|.+|..|+||||+|
T Consensus       231 ~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~-----------v~~LL~~-GAdin~~d~~G~TpL~~A  298 (489)
T PHA02798        231 LYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKI-----------FEYLLQL-GGDINIITELGNTCLFTA  298 (489)
T ss_pred             HhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHH-----------HHHHHHc-CCcccccCCCCCcHHHHH
Confidence                           1134678899999999999999999999           9999996 999999999999999999


Q ss_pred             HhccCCcchhhHHHHHHHhcCCCC
Q 038344          161 AQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       161 ~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      +.    .++.++++.|+++|++..
T Consensus       299 ~~----~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        299 FE----NESKFIFNSILNKKPNKN  318 (489)
T ss_pred             HH----cCcHHHHHHHHccCCCHH
Confidence            99    788999999999998873

>PHA03095 ankyrin-like protein; Provisional

Probab=99.90  E-value=8.4e-23  Score=201.96  Aligned_cols=169  Identities=20%  Similarity=0.172  Sum_probs=113.1

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC--------------ccccCCCCCcHHHHHH-
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------CSATDVDGRNALHLAA-   65 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~--------------~~~~d~~G~tpLh~A~-   65 (383)
                      +||||+|+.....++.++++.|++.|+++ +..|..|+||||+|+..|+              ++.+|.+|+||||+|+ 
T Consensus        48 ~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi-n~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~  126 (471)
T PHA03095         48 KTPLHLYLHYSSEKVKDIVRLLLEAGADV-NAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLS  126 (471)
T ss_pred             CCHHHHHHHhcCCChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhh
Confidence            47888885521123788888888888887 7777788888888888873              5667777888888887 


Q ss_pred             -HcCCHHHHHHHHHcCCCCCch------H--------------HHHHhhc------------------------------
Q 038344           66 -MEGHIDVLEELVRAKPDAASA------P--------------LKSFLET------------------------------   94 (383)
Q Consensus        66 -~~g~~~iv~~Ll~~~~~~~~~------~--------------l~~l~~~------------------------------   94 (383)
                       ..++.+++++|+++|++....      +              ++++++.                              
T Consensus       127 ~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~  206 (471)
T PHA03095        127 GFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVR  206 (471)
T ss_pred             CCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHH
Confidence             456777888888877765432      1              2222221                              


Q ss_pred             --cCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhH
Q 038344           95 --REGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEI  172 (383)
Q Consensus        95 --~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i  172 (383)
                        ...|.+++.+|..|+||||+|+..|+.+.         ..++.|++. |+++|.+|.+|+||||+|+.    .++.++
T Consensus       207 ~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~---------~~v~~ll~~-g~din~~d~~g~TpLh~A~~----~~~~~~  272 (471)
T PHA03095        207 ELIRAGCDPAATDMLGNTPLHSMATGSSCKR---------SLVLPLLIA-GISINARNRYGQTPLHYAAV----FNNPRA  272 (471)
T ss_pred             HHHHcCCCCcccCCCCCCHHHHHHhcCCchH---------HHHHHHHHc-CCCCCCcCCCCCCHHHHHHH----cCCHHH
Confidence              02334445555555555555555544311         126667775 88888888888888888888    777888


Q ss_pred             HHHHHHhcCCCC
Q 038344          173 GELLRRARGNSA  184 (383)
Q Consensus       173 ~~~L~~~ga~~~  184 (383)
                      +++|+++|+++.
T Consensus       273 v~~LL~~gad~n  284 (471)
T PHA03095        273 CRRLIALGADIN  284 (471)
T ss_pred             HHHHHHcCCCCc
Confidence            888888888874

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.90  E-value=7.4e-23  Score=203.15  Aligned_cols=167  Identities=14%  Similarity=0.169  Sum_probs=126.5

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcC--C-------------ccc-cCCCCCcHHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG--K-------------CSA-TDVDGRNALHLA   64 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g--~-------------~~~-~d~~G~tpLh~A   64 (383)
                      .||||.|+.++..|+.++++.|+++|+++.+..|..|+||||+|+..+  +             ++. .|..|.||||+|
T Consensus       109 ~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a  188 (494)
T PHA02989        109 VSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIY  188 (494)
T ss_pred             CcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHH
Confidence            478887776666677888888888887775566777888888776543  2             333 456778888877


Q ss_pred             HHcC----CHHHHHHHHHcCCCCCch------HHHHHh--------------hccCCcccccCCCCCCCcHHHHHHHcCC
Q 038344           65 AMEG----HIDVLEELVRAKPDAASA------PLKSFL--------------ETREGSELLNANDDNGMTILHLAVADKQ  120 (383)
Q Consensus        65 ~~~g----~~~iv~~Ll~~~~~~~~~------~l~~l~--------------~~~~~~~~~n~~d~~g~TpLh~A~~~~~  120 (383)
                      ++++    +.+++++|+++|++....      +++..+              +.+..++++|.+|.+|+||||+|+..|+
T Consensus       189 ~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~  268 (494)
T PHA02989        189 LRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDN  268 (494)
T ss_pred             HhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcC
Confidence            6654    778888888887765422      222111              1122456789999999999999999999


Q ss_pred             hhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCC
Q 038344          121 IEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNS  183 (383)
Q Consensus       121 ~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~  183 (383)
                      .++           +++|++. |+|+|.+|..|.||||+|+.    .++.++++.|++.++..
T Consensus       269 ~~~-----------v~~LL~~-Gadin~~d~~G~TpL~~A~~----~~~~~iv~~LL~~~p~~  315 (494)
T PHA02989        269 YEA-----------FNYLLKL-GDDIYNVSKDGDTVLTYAIK----HGNIDMLNRILQLKPGK  315 (494)
T ss_pred             HHH-----------HHHHHHc-CCCccccCCCCCCHHHHHHH----cCCHHHHHHHHhcCCCh
Confidence            999           9999996 99999999999999999999    78899999999887543

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.90  E-value=1.3e-22  Score=198.27  Aligned_cols=163  Identities=18%  Similarity=0.203  Sum_probs=131.2

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||+|+.   .|+.++++.|++.|+++ +..|.+|.||||+|+..|+             ++..|.+|.||||+|++.
T Consensus       125 ~T~Lh~A~~---~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~  200 (434)
T PHA02874        125 KTFLHYAIK---KGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEY  200 (434)
T ss_pred             ccHHHHHHH---CCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            599999954   99999999999999998 8889999999999999998             567889999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCch------HHHHHhh-------ccCCcccccCCCCCCCcHHHHHHHcC-ChhHHHHhhhchhh
Q 038344           68 GHIDVLEELVRAKPDAASA------PLKSFLE-------TREGSELLNANDDNGMTILHLAVADK-QIEIWITHITYKSR  133 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~------~l~~l~~-------~~~~~~~~n~~d~~g~TpLh~A~~~~-~~~~~~~~l~~~~~  133 (383)
                      |+.+++++|++.|++....      +++..+.       .+..+..+|.+|.+|+||||+|+..+ +.++          
T Consensus       201 g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~i----------  270 (434)
T PHA02874        201 GDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDI----------  270 (434)
T ss_pred             CCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCCcHHH----------
Confidence            9999999999999874322      3333221       11235567888888888888888765 6777          


Q ss_pred             HHHHhhhcccccccccccCCCCHHHHHHhccCCcc-hhhHHHHHHHhcCCC
Q 038344          134 AIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIK-YWEIGELLRRARGNS  183 (383)
Q Consensus       134 ~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~-~~~i~~~L~~~ga~~  183 (383)
                       +++|++. |+|++.+|.+|.||||+|++    .. ..++++.|+..++..
T Consensus       271 -v~~Ll~~-gad~n~~d~~g~TpL~~A~~----~~~~~~~ik~ll~~~~~~  315 (434)
T PHA02874        271 -IDILLYH-KADISIKDNKGENPIDTAFK----YINKDPVIKDIIANAVLI  315 (434)
T ss_pred             -HHHHHHC-cCCCCCCCCCCCCHHHHHHH----hCCccHHHHHHHHhcCch
Confidence             8888885 88888888888888888887    33 456777888777654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.89  E-value=2e-22  Score=177.00  Aligned_cols=144  Identities=13%  Similarity=0.114  Sum_probs=123.6

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcC--C-------------ccccC-CCCCcHHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG--K-------------CSATD-VDGRNALHLA   64 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g--~-------------~~~~d-~~G~tpLh~A   64 (383)
                      .||||.|+   ..|+.+.|+.|++.    .+..|..|.||||+|+..+  +             ++.++ .+|.||||+|
T Consensus        22 ~~pL~~A~---~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         22 CNPLFYYV---EKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             CcHHHHHH---HhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            48999995   49999999999975    2567899999999999865  3             56665 4799999998


Q ss_pred             HHc---CCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHH--cCChhHHHHhhhchhhHHHHhh
Q 038344           65 AME---GHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVA--DKQIEIWITHITYKSRAIKFFT  139 (383)
Q Consensus        65 ~~~---g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~--~~~~~~~~~~l~~~~~~v~~Ll  139 (383)
                      +..   ++.+++++|+++|++                  +|.+|.+|.||||+|+.  .++.++           +++|+
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gad------------------in~~d~~G~TpLh~a~~~~~~~~~i-----------v~~Li  145 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSS------------------ITEEDEDGKNLLHMYMCNFNVRINV-----------IKLLI  145 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCC------------------CCCcCCCCCCHHHHHHHhccCCHHH-----------HHHHH
Confidence            764   579999999999988                  89999999999999986  467889           99999


Q ss_pred             hcccccccccccCCCCHHHHH-HhccCCcchhhHHHHHHHhcCCCCC
Q 038344          140 TSTAIEVNAVNANGFTAWDIL-AQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       140 ~~~g~d~~~~n~~G~TpL~~A-~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      +. |++++.+|.+|.||||.+ +.    .++.+++++|+++|+++..
T Consensus       146 ~~-gadin~~d~~g~t~Lh~~a~~----~~~~~iv~~Ll~~Gadi~~  187 (209)
T PHA02859        146 DS-GVSFLNKDFDNNNILYSYILF----HSDKKIFDFLTSLGIDINE  187 (209)
T ss_pred             Hc-CCCcccccCCCCcHHHHHHHh----cCCHHHHHHHHHcCCCCCC
Confidence            86 999999999999999964 44    5678999999999998853

>PHA02946 ankyin-like protein; Provisional

Probab=99.89  E-value=2.2e-22  Score=196.10  Aligned_cols=165  Identities=20%  Similarity=0.200  Sum_probs=136.0

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEG   68 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g   68 (383)
                      ++||.++. ...++.++++.|+++|+++ +.+|.+|+||||+|+..|+             ++.+|.+|+||||+|+..+
T Consensus        39 ~~Lh~~~~-~~~~~~~iv~~Ll~~Gadv-n~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~  116 (446)
T PHA02946         39 HILHAYCG-IKGLDERFVEELLHRGYSP-NETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTD  116 (446)
T ss_pred             hHHHHHHH-hcCCCHHHHHHHHHCcCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcC
Confidence            68898764 4566889999999999998 8889999999999999998             6778999999999998866


Q ss_pred             --CHHHHHHHHHcCCCCCch------------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCC--hhHHHH
Q 038344           69 --HIDVLEELVRAKPDAASA------------------PLKSFLETREGSELLNANDDNGMTILHLAVADKQ--IEIWIT  126 (383)
Q Consensus        69 --~~~iv~~Ll~~~~~~~~~------------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~--~~~~~~  126 (383)
                        ..+++++|+++|++....                  .+++|++   .+.+++.+|..|+||||+|+..++  .++   
T Consensus       117 ~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~---~gad~~~~d~~G~t~Lh~A~~~~~~~~~~---  190 (446)
T PHA02946        117 DEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMS---IGFEARIVDKFGKNHIHRHLMSDNPKAST---  190 (446)
T ss_pred             CchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHh---ccccccccCCCCCCHHHHHHHhcCCCHHH---
Confidence              478999999999886521                  3445554   677889999999999999987655  467   


Q ss_pred             hhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCCC
Q 038344          127 HITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAKD  186 (383)
Q Consensus       127 ~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~~  186 (383)
                              +++|++. |+|++.+|.+|+||||+|+...  .++.+++++|++ |++.+..
T Consensus       191 --------v~~Ll~~-Gadin~~d~~G~TpLH~Aa~~~--~~~~~iv~lLl~-gadin~~  238 (446)
T PHA02946        191 --------ISWMMKL-GISPSKPDHDGNTPLHIVCSKT--VKNVDIINLLLP-STDVNKQ  238 (446)
T ss_pred             --------HHHHHHc-CCCCcccCCCCCCHHHHHHHcC--CCcHHHHHHHHc-CCCCCCC
Confidence                    8999996 9999999999999999999821  236788998885 8887643

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.89  E-value=2.4e-22  Score=202.66  Aligned_cols=168  Identities=14%  Similarity=0.134  Sum_probs=134.5

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC---------------ccccCCCCCcHHHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK---------------CSATDVDGRNALHLAA   65 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~---------------~~~~d~~G~tpLh~A~   65 (383)
                      +||||.|+. ...++.+++++|+++|+++ +..|.+|.||||+|+..|+               ++.+|.+|+||||.|+
T Consensus       178 ~TpLH~A~~-n~~~~~eIVklLLe~GADV-N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai  255 (764)
T PHA02716        178 YGILHAYLG-NMYVDIDILEWLCNNGVNV-NLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYI  255 (764)
T ss_pred             CcHHHHHHH-hccCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            489998754 3457899999999999998 8889999999999999884               6778899999999875


Q ss_pred             ---HcCCHHHHHHHHHcCCCCCc-------------------hHHHHHhhccCCcccccCCCCCCCcHHHHHHH--cCCh
Q 038344           66 ---MEGHIDVLEELVRAKPDAAS-------------------APLKSFLETREGSELLNANDDNGMTILHLAVA--DKQI  121 (383)
Q Consensus        66 ---~~g~~~iv~~Ll~~~~~~~~-------------------~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~--~~~~  121 (383)
                         .+++.|+++.+++.+.....                   ..+++|++   .|+++|.+|.+|+||||+|+.  .++.
T Consensus       256 ~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe---~GAdIN~kD~~G~TPLH~Aaa~~~~~~  332 (764)
T PHA02716        256 INIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQ---PGVKLHYKDSAGRTCLHQYILRHNIST  332 (764)
T ss_pred             HhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHh---CCCceeccCCCCCCHHHHHHHHhCCCc
Confidence               46788888888775322111                   13455554   677899999999999999875  4578


Q ss_pred             hHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhc----------cCCcchhhHHHHHHHhcCCCCC
Q 038344          122 EIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQS----------KRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       122 ~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~----------~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      ++           +++|++. |+|+|.+|..|+||||+|+..          ..+.++.+++++|+++|+++..
T Consensus       333 eI-----------VklLLe~-GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~  394 (764)
T PHA02716        333 DI-----------IKLLHEY-GNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITA  394 (764)
T ss_pred             hH-----------HHHHHHc-CCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCC
Confidence            89           9999996 999999999999999998641          0123578999999999999854

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.89  E-value=2.5e-22  Score=202.51  Aligned_cols=168  Identities=19%  Similarity=0.194  Sum_probs=125.0

Q ss_pred             HHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHc--CC-------------ccccCCCCCcHHHHHHH--------
Q 038344           10 AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQK--GK-------------CSATDVDGRNALHLAAM--------   66 (383)
Q Consensus        10 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~--g~-------------~~~~d~~G~tpLh~A~~--------   66 (383)
                      |+..|+.++++.|++.|+++ +.+|.+|+||||+|+..  ++             ++.+|..|+||||+|+.        
T Consensus       291 AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~l  369 (764)
T PHA02716        291 LARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNIL  369 (764)
T ss_pred             HHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccc
Confidence            56678889999999999887 78899999999987653  33             66788899999998865        


Q ss_pred             ------cCCHHHHHHHHHcCCCCCch------HHH----------------HHhhcc-----------------------
Q 038344           67 ------EGHIDVLEELVRAKPDAASA------PLK----------------SFLETR-----------------------   95 (383)
Q Consensus        67 ------~g~~~iv~~Ll~~~~~~~~~------~l~----------------~l~~~~-----------------------   95 (383)
                            .++.+++++|+++|++....      +++                +|++..                       
T Consensus       370 d~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~  449 (764)
T PHA02716        370 DPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCI  449 (764)
T ss_pred             cccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhh
Confidence                  36889999999998876533      332                222210                       


Q ss_pred             -----------------------------------CCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhh
Q 038344           96 -----------------------------------EGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTT  140 (383)
Q Consensus        96 -----------------------------------~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~  140 (383)
                                                         ..+..+|..|..|+||||+|+..|+.+++      ..+.+++|++
T Consensus       450 lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v------~~e~~k~LL~  523 (764)
T PHA02716        450 IHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANI------VMDSFVYLLS  523 (764)
T ss_pred             HHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccch------hHHHHHHHHh
Confidence                                               00112466788999999999999887540      0011599999


Q ss_pred             cccccccccccCCCCHHHHHHhccC-CcchhhHHHHHHHhcCCCCC
Q 038344          141 STAIEVNAVNANGFTAWDILAQSKR-DIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       141 ~~g~d~~~~n~~G~TpL~~A~~~~~-~~~~~~i~~~L~~~ga~~~~  185 (383)
                      . |+|+|.+|++|+||||+|++++. +..+.++++.|+++|++...
T Consensus       524 ~-GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~  568 (764)
T PHA02716        524 I-QYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVDI  568 (764)
T ss_pred             C-CCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcch
Confidence            6 99999999999999999998322 12245999999999998743

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.89  E-value=6e-22  Score=204.21  Aligned_cols=176  Identities=23%  Similarity=0.259  Sum_probs=124.1

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCC----------------------------------------------
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSD----------------------------------------------   34 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d----------------------------------------------   34 (383)
                      +||||+|+   ..|+.++|++|++.|+++ +..+                                              
T Consensus       179 ~TpLh~Aa---~~G~~~iv~~LL~~Gad~-n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~  254 (682)
T PHA02876        179 ITPIHYAA---ERGNAKMVNLLLSYGADV-NIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLE  254 (682)
T ss_pred             CCHHHHHH---HCCCHHHHHHHHHCCCCc-CccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHH
Confidence            48999984   489999999999888765 3333                                              


Q ss_pred             ----------------CCCCcHHHHHHHcCC--------------ccccCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCC
Q 038344           35 ----------------SRKSSALHIASQKGK--------------CSATDVDGRNALHLAAMEG-HIDVLEELVRAKPDA   83 (383)
Q Consensus        35 ----------------~~g~TpLh~Aa~~g~--------------~~~~d~~G~tpLh~A~~~g-~~~iv~~Ll~~~~~~   83 (383)
                                      ..|+||||+|+..|+              ++.+|.+|.||||+|+..| +.++++.|++.|++.
T Consensus       255 ~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi  334 (682)
T PHA02876        255 TSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV  334 (682)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC
Confidence                            345566666665554              3445666777777777666 466777777766654


Q ss_pred             Cch------HHHHHhh----------ccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchh---------------
Q 038344           84 ASA------PLKSFLE----------TREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKS---------------  132 (383)
Q Consensus        84 ~~~------~l~~l~~----------~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~---------------  132 (383)
                      ...      +++....          ....+.++|.+|..|+||||+|+..|+.+++..++.++.               
T Consensus       335 n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~  414 (682)
T PHA02876        335 NAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHF  414 (682)
T ss_pred             CCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHH
Confidence            322      2322221          124678899999999999999999999999777765321               


Q ss_pred             --------hHHHHhhhcccccccccccCCCCHHHHHHhccCCcc-hhhHHHHHHHhcCCCCC
Q 038344          133 --------RAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIK-YWEIGELLRRARGNSAK  185 (383)
Q Consensus       133 --------~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~-~~~i~~~L~~~ga~~~~  185 (383)
                              ..+++|++. |+++|.+|.+|+||||+|+.    .+ +.+++++|+++|++++.
T Consensus       415 A~~~~~~~~~vk~Ll~~-gadin~~d~~G~TpLh~Aa~----~~~~~~iv~lLl~~Gad~n~  471 (682)
T PHA02876        415 ALCGTNPYMSVKTLIDR-GANVNSKNKDLSTPLHYACK----KNCKLDVIEMLLDNGADVNA  471 (682)
T ss_pred             HHHcCCHHHHHHHHHhC-CCCCCcCCCCCChHHHHHHH----hCCcHHHHHHHHHCCCCCCC
Confidence                    236777775 88888888888888888887    33 46788888888888754

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.89  E-value=6.4e-22  Score=188.98  Aligned_cols=147  Identities=22%  Similarity=0.243  Sum_probs=133.0

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCC-CCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSD-SRKSSALHIASQKGK-------------CSATDVDGRNALHLAAM   66 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~   66 (383)
                      .|+||+|   |.+++.+++++|+++|+++ |..+ .-|.||||||+++|+             ++.+|.+|.||||+|++
T Consensus        79 ~tlLHWA---AiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~  154 (600)
T KOG0509|consen   79 VTLLHWA---AINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQ  154 (600)
T ss_pred             ccceeHH---HHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHH
Confidence            3789999   7799999999999999999 5555 789999999999999             78899999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccc
Q 038344           67 EGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEV  146 (383)
Q Consensus        67 ~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~  146 (383)
                      .|+.-.+-+|+.++.|                  +|.+|.+|+||||+|+.+|....           ++.|++ .|+++
T Consensus       155 ~~~~~~vayll~~~~d------------------~d~~D~~grTpLmwAaykg~~~~-----------v~~LL~-f~a~~  204 (600)
T KOG0509|consen  155 FGHTALVAYLLSKGAD------------------IDLRDNNGRTPLMWAAYKGFALF-----------VRRLLK-FGASL  204 (600)
T ss_pred             hCchHHHHHHHHhccc------------------CCCcCCCCCCHHHHHHHhcccHH-----------HHHHHH-hcccc
Confidence            9999999999999877                  89999999999999999999997           788888 49999


Q ss_pred             cccc-cCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          147 NAVN-ANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       147 ~~~n-~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      +..| ++|+||||+|+.    .++.+.+.++++.|++-..
T Consensus       205 ~~~d~~~g~TpLHwa~~----~gN~~~v~Ll~~g~~~~d~  240 (600)
T KOG0509|consen  205 LLTDDNHGNTPLHWAVV----GGNLTAVKLLLEGGADLDK  240 (600)
T ss_pred             cccccccCCchHHHHHh----cCCcceEehhhhcCCcccc
Confidence            9988 899999999999    7888888877777776544

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.3e-21  Score=193.87  Aligned_cols=176  Identities=20%  Similarity=0.238  Sum_probs=134.9

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHH-----HHHcCC-------------ccccCCCCCcHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHI-----ASQKGK-------------CSATDVDGRNALH   62 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~-----Aa~~g~-------------~~~~d~~G~tpLh   62 (383)
                      +||||+|+.   .|+.++++.|++.|+++ +..+..|.||||+     |+..|+             ++..|.+|.||||
T Consensus        36 ~t~L~~A~~---~~~~~ivk~Ll~~g~~~-~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~  111 (480)
T PHA03100         36 VLPLYLAKE---ARNIDVVKILLDNGADI-NSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLL  111 (480)
T ss_pred             chhhhhhhc---cCCHHHHHHHHHcCCCC-CCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhh
Confidence            478888844   78888888888888777 6677778888888     777776             4566777888888


Q ss_pred             HHH--HcCCHHHHHHHHHcCCCCCch------HHHHHhhc-----------cCCcccccCCCCCCCcHHHHHHHcCChhH
Q 038344           63 LAA--MEGHIDVLEELVRAKPDAASA------PLKSFLET-----------REGSELLNANDDNGMTILHLAVADKQIEI  123 (383)
Q Consensus        63 ~A~--~~g~~~iv~~Ll~~~~~~~~~------~l~~l~~~-----------~~~~~~~n~~d~~g~TpLh~A~~~~~~~~  123 (383)
                      +|+  ..|+.+++++|+++|++....      +++.+...           .+.|.++|.+|.+|+||||+|+..|+.++
T Consensus       112 ~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~i  191 (480)
T PHA03100        112 YAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDV  191 (480)
T ss_pred             HHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHH
Confidence            888  788888888888877765322      22222211           13566688888888888888888888888


Q ss_pred             HHHhhhch------------------------------hhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHH
Q 038344          124 WITHITYK------------------------------SRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIG  173 (383)
Q Consensus       124 ~~~~l~~~------------------------------~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~  173 (383)
                      +..++.++                              .+.+++|++. |+++|.+|..|.||||+|+.    .++.+++
T Consensus       192 v~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~-g~din~~d~~g~TpL~~A~~----~~~~~iv  266 (480)
T PHA03100        192 IKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY-GVPINIKDVYGFTPLHYAVY----NNNPEFV  266 (480)
T ss_pred             HHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHH----cCCHHHH
Confidence            77666421                              4568999996 99999999999999999999    7889999


Q ss_pred             HHHHHhcCCCCC
Q 038344          174 ELLRRARGNSAK  185 (383)
Q Consensus       174 ~~L~~~ga~~~~  185 (383)
                      ++|+++|++++.
T Consensus       267 ~~Ll~~gad~n~  278 (480)
T PHA03100        267 KYLLDLGANPNL  278 (480)
T ss_pred             HHHHHcCCCCCc
Confidence            999999998754

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.88  E-value=9.9e-22  Score=172.65  Aligned_cols=130  Identities=19%  Similarity=0.273  Sum_probs=113.5

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCC-CCCCcHHHHHHHcC---C-------------ccccCCCCCcHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSD-SRKSSALHIASQKG---K-------------CSATDVDGRNALHL   63 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~TpLh~Aa~~g---~-------------~~~~d~~G~tpLh~   63 (383)
                      +||||+|+. ...|+.++++.|++.|+++ +..+ ..|.||||+|+..+   +             ++.+|.+|.||||.
T Consensus        52 ~TpLh~a~~-~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~  129 (209)
T PHA02859         52 ETPIFSCLE-KDKVNVEILKFLIENGADV-NFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHM  129 (209)
T ss_pred             CCHHHHHHH-cCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            599999965 1235899999999999999 6665 58999999987643   2             77899999999999


Q ss_pred             HHH--cCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHH-HHHcCChhHHHHhhhchhhHHHHhhh
Q 038344           64 AAM--EGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHL-AVADKQIEIWITHITYKSRAIKFFTT  140 (383)
Q Consensus        64 A~~--~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~-A~~~~~~~~~~~~l~~~~~~v~~Ll~  140 (383)
                      |+.  .++.+++++|+++|++                  +|.+|.+|+||||. |+..++.++           +++|++
T Consensus       130 a~~~~~~~~~iv~~Li~~gad------------------in~~d~~g~t~Lh~~a~~~~~~~i-----------v~~Ll~  180 (209)
T PHA02859        130 YMCNFNVRINVIKLLIDSGVS------------------FLNKDFDNNNILYSYILFHSDKKI-----------FDFLTS  180 (209)
T ss_pred             HHHhccCCHHHHHHHHHcCCC------------------cccccCCCCcHHHHHHHhcCCHHH-----------HHHHHH
Confidence            986  4689999999999888                  89999999999996 566789999           999999


Q ss_pred             cccccccccccCCCCHHHHHHh
Q 038344          141 STAIEVNAVNANGFTAWDILAQ  162 (383)
Q Consensus       141 ~~g~d~~~~n~~G~TpL~~A~~  162 (383)
                      . |++++.+|..|.||+|+|..
T Consensus       181 ~-Gadi~~~d~~g~tpl~la~~  201 (209)
T PHA02859        181 L-GIDINETNKSGYNCYDLIKF  201 (209)
T ss_pred             c-CCCCCCCCCCCCCHHHHHhh
Confidence            6 99999999999999999987

>PHA03095 ankyrin-like protein; Provisional

Probab=99.87  E-value=1.4e-21  Score=193.24  Aligned_cols=163  Identities=17%  Similarity=0.185  Sum_probs=130.6

Q ss_pred             CChHHHHHHHHHcC-CHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcC--C-------------ccccCCCCCcHHHHH
Q 038344            1 MTILQLAVAAALLG-HEDFVNEILCQKPELARKSDSRKSSALHIASQKG--K-------------CSATDVDGRNALHLA   64 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g-~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g--~-------------~~~~d~~G~tpLh~A   64 (383)
                      +||||+|+.   .| +.++++.|++.|+++ +..|..|+||||+|+..+  +             ++..|.+|.||||+|
T Consensus        84 ~TpLh~A~~---~~~~~~iv~lLl~~ga~i-n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a  159 (471)
T PHA03095         84 FTPLHLYLY---NATTLDVIKLLIKAGADV-NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVL  159 (471)
T ss_pred             CCHHHHHHH---cCCcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            488888844   77 588888888888887 778888888888888433  3             556777788888887


Q ss_pred             HHcC--CHHHHHHHHHcCCCCCch--------------------HHHHHh------------------------------
Q 038344           65 AMEG--HIDVLEELVRAKPDAASA--------------------PLKSFL------------------------------   92 (383)
Q Consensus        65 ~~~g--~~~iv~~Ll~~~~~~~~~--------------------~l~~l~------------------------------   92 (383)
                      +..+  +.+++++|+++|++....                    .++.++                              
T Consensus       160 ~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~  239 (471)
T PHA03095        160 LKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSL  239 (471)
T ss_pred             HHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHH
Confidence            7755  567788888777664321                    122221                              


Q ss_pred             --hccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchh
Q 038344           93 --ETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYW  170 (383)
Q Consensus        93 --~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~  170 (383)
                        .....+.++|.+|.+|+||||+|+..|+.++           +++|++. |+|++.+|.+|.||||+|+.    .++.
T Consensus       240 v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~-----------v~~LL~~-gad~n~~~~~g~tpl~~A~~----~~~~  303 (471)
T PHA03095        240 VLPLLIAGISINARNRYGQTPLHYAAVFNNPRA-----------CRRLIAL-GADINAVSSDGNTPLSLMVR----NNNG  303 (471)
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-CCCCcccCCCCCCHHHHHHH----hCCH
Confidence              1234678899999999999999999999999           9999996 99999999999999999999    8899


Q ss_pred             hHHHHHHHhcCCC
Q 038344          171 EIGELLRRARGNS  183 (383)
Q Consensus       171 ~i~~~L~~~ga~~  183 (383)
                      ++++.|+++|++.
T Consensus       304 ~~v~~LL~~~~~~  316 (471)
T PHA03095        304 RAVRAALAKNPSA  316 (471)
T ss_pred             HHHHHHHHhCCCH
Confidence            9999999999876

>PHA02795 ankyrin-like protein; Provisional

Probab=99.87  E-value=1e-21  Score=186.21  Aligned_cols=150  Identities=18%  Similarity=0.168  Sum_probs=128.7

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-----------c---ccc-----CCCCCcHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-----------C---SAT-----DVDGRNAL   61 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-----------~---~~~-----d~~G~tpL   61 (383)
                      +|+||.++. ...|+.+++++|+++|+++ +.  .++.||||.|+..|+           .   +..     +..|.||+
T Consensus       117 ~~~L~~~~~-n~~n~~eiV~~LI~~GADI-n~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l  192 (437)
T PHA02795        117 QDLLLYYLS-NAYVEIDIVDFMVDHGAVI-YK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRG  192 (437)
T ss_pred             cHHHHHHHH-hcCCCHHHHHHHHHCCCCC-CC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchh
Confidence            689999976 3469999999999999998 44  355899999999887           1   111     13478899


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhc
Q 038344           62 HLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTS  141 (383)
Q Consensus        62 h~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~  141 (383)
                      |.|+.+++.|++++|+++|++                  +|.+|.+|+||||+|+..|+.++           +++|++.
T Consensus       193 ~~a~~~~~~eIve~LIs~GAD------------------IN~kD~~G~TpLh~Aa~~g~~ei-----------VelLL~~  243 (437)
T PHA02795        193 FLVDEPTVLEIYKLCIPYIED------------------INQLDAGGRTLLYRAIYAGYIDL-----------VSWLLEN  243 (437)
T ss_pred             HHHHhcCHHHHHHHHHhCcCC------------------cCcCCCCCCCHHHHHHHcCCHHH-----------HHHHHHC
Confidence            999999999999999999988                  89999999999999999999999           9999996


Q ss_pred             ccccccccccCCCCHHHHHHhccC----CcchhhHHHHHHHhcCCCC
Q 038344          142 TAIEVNAVNANGFTAWDILAQSKR----DIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       142 ~g~d~~~~n~~G~TpL~~A~~~~~----~~~~~~i~~~L~~~ga~~~  184 (383)
                       |+++|.+|..|.||||+|+..+.    ..++.+++++|+++|++..
T Consensus       244 -GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~  289 (437)
T PHA02795        244 -GANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID  289 (437)
T ss_pred             -CCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence             99999999999999999998331    1235789999999999774

>PF13962 PGG: Domain of unknown function

Probab=99.87  E-value=3.1e-22  Score=157.55  Aligned_cols=95  Identities=34%  Similarity=0.545  Sum_probs=83.1

Q ss_pred             chhHHhhccceehhHHHHHHHHHhhccCCCCCc--------------cc-cchHHHHhhhHHHHHHHHHHHHHHhccc--
Q 038344          225 DDWLKEKRNAAMIVATGIATMGFQAGVNPPNSS--------------RL-DASSFVAHNTLGFLSSLSVILLLLFSLP--  287 (383)
Q Consensus       225 ~~~~~~~~~~l~vva~Liatvtf~a~~~~Pgg~--------------~~-~f~~F~~~n~~a~~~s~~~~~~l~~~~~--  287 (383)
                      +||++++++++++||+||||+||+|+++||||+              ++ +|++|+++|++||++|+++++++++++.  
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~~~~   80 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGLDDF   80 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            478999999999999999999999999999999              34 8999999999999999999999886441  


Q ss_pred             -ccchHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 038344          288 -INRTLFVWIVMIMMGVAIGEMAWVYAVSIDVI  319 (383)
Q Consensus       288 -~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~~  319 (383)
                       ..++...+....+|++++.+|++||++|+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   81 RRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence             22334567777899999999999999999864

>PHA02917 ankyrin-like protein; Provisional

Probab=99.87  E-value=2e-21  Score=196.62  Aligned_cols=162  Identities=17%  Similarity=0.171  Sum_probs=129.2

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCcc-----------c---cCCC-CCcHHHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-----------A---TDVD-GRNALHLAA   65 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~-----------~---~d~~-G~tpLh~A~   65 (383)
                      +||||+|+.++..|+.++++.|++.|+++ +..|.+|+||||+|+..|+.+           .   .+.+ ..+++|.|+
T Consensus        33 ~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v-~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~  111 (661)
T PHA02917         33 NNALHAYLFNEHCNNVEVVKLLLDSGTNP-LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKS  111 (661)
T ss_pred             CcHHHHHHHhhhcCcHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHh
Confidence            59999999988889999999999999998 788999999999999988611           0   1222 236677788


Q ss_pred             HcCCHHHHHHHHHcCCCCCch--------------------HHHHHhhccCCcccccCCCC---CC-----------CcH
Q 038344           66 MEGHIDVLEELVRAKPDAASA--------------------PLKSFLETREGSELLNANDD---NG-----------MTI  111 (383)
Q Consensus        66 ~~g~~~iv~~Ll~~~~~~~~~--------------------~l~~l~~~~~~~~~~n~~d~---~g-----------~Tp  111 (383)
                      .+|+.|++++|+++|++....                    .+++|++   .|+++|.+|.   .|           .||
T Consensus       112 ~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~---~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~  188 (661)
T PHA02917        112 KNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIE---NGCSVLYEDEDDEYGYAYDDYQPRNCGTV  188 (661)
T ss_pred             hcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHH---cCCCccccccccccccccccccccccccH
Confidence            888999999999888887643                    3344444   6677776553   34           599


Q ss_pred             HHHHHH-----------cCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcch--hhHHHHHHH
Q 038344          112 LHLAVA-----------DKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKY--WEIGELLRR  178 (383)
Q Consensus       112 Lh~A~~-----------~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~--~~i~~~L~~  178 (383)
                      ||+|+.           .++.++           +++|++. |+|+|..|.+|.||||+|+.    .++  .|++++|++
T Consensus       189 L~~a~~~~~~~~~~~~~~~~~ei-----------v~~Li~~-Gadvn~~d~~G~TpLh~A~~----~g~~~~eivk~Li~  252 (661)
T PHA02917        189 LHLYIISHLYSESDTRAYVRPEV-----------VKCLINH-GIKPSSIDKNYCTALQYYIK----SSHIDIDIVKLLMK  252 (661)
T ss_pred             HHHHHhhcccccccccccCcHHH-----------HHHHHHC-CCCcccCCCCCCcHHHHHHH----cCCCcHHHHHHHHh
Confidence            999986           457888           9999996 99999999999999999999    555  479999975


Q ss_pred             hcCCC
Q 038344          179 ARGNS  183 (383)
Q Consensus       179 ~ga~~  183 (383)
                       |++.
T Consensus       253 -g~d~  256 (661)
T PHA02917        253 -GIDN  256 (661)
T ss_pred             -CCcc
Confidence             8765

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.87  E-value=3.8e-21  Score=198.24  Aligned_cols=159  Identities=19%  Similarity=0.283  Sum_probs=125.3

Q ss_pred             ChHHHHHHHHHcC-CHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC--------------ccccCCCCCcHHHHHHH
Q 038344            2 TILQLAVAAALLG-HEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------CSATDVDGRNALHLAAM   66 (383)
Q Consensus         2 TpLh~A~~Aa~~g-~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~--------------~~~~d~~G~tpLh~A~~   66 (383)
                      ||||+|+.   .| +.+.++.|++.|+++ +..|..|.||||+|+..+.              ++.+|.+|+||||+|+.
T Consensus       309 TpLh~Aa~---~g~~~~~v~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~  384 (682)
T PHA02876        309 TPLYLMAK---NGYDTENIRTLIMLGADV-NAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAV  384 (682)
T ss_pred             CHHHHHHH---hCCCHHHHHHHHHcCCCC-CCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHH
Confidence            56666632   45 466666666666665 5566666666666665443              67788999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCch------H-------------HHHHhhccCCcccccCCCCCCCcHHHHHHHcC-ChhHHHH
Q 038344           67 EGHIDVLEELVRAKPDAASA------P-------------LKSFLETREGSELLNANDDNGMTILHLAVADK-QIEIWIT  126 (383)
Q Consensus        67 ~g~~~iv~~Ll~~~~~~~~~------~-------------l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~-~~~~~~~  126 (383)
                      .|+.+++++|+++|++....      +             +++|++   .++++|.+|.+|+||||+|+..+ +.++   
T Consensus       385 ~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~---~gadin~~d~~G~TpLh~Aa~~~~~~~i---  458 (682)
T PHA02876        385 RNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLID---RGANVNSKNKDLSTPLHYACKKNCKLDV---  458 (682)
T ss_pred             cCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHh---CCCCCCcCCCCCChHHHHHHHhCCcHHH---
Confidence            99999999999999886532      2             344444   77889999999999999999876 6789   


Q ss_pred             hhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          127 HITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       127 ~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                              +++|++. |+|+|.+|..|.||+++|+.    .  .++++.|+.+|++...
T Consensus       459 --------v~lLl~~-Gad~n~~d~~g~tpl~~a~~----~--~~~v~~Ll~~~a~~~~  502 (682)
T PHA02876        459 --------IEMLLDN-GADVNAINIQNQYPLLIALE----Y--HGIVNILLHYGAELRD  502 (682)
T ss_pred             --------HHHHHHC-CCCCCCCCCCCCCHHHHHHH----h--CCHHHHHHHCCCCCCc
Confidence                    9999996 99999999999999999987    3  2589999999998753

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.87  E-value=2.3e-21  Score=191.74  Aligned_cols=125  Identities=23%  Similarity=0.278  Sum_probs=69.9

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc-
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME-   67 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~-   67 (383)
                      ||||+|+   ..|+.++++.|++.|+++ +..|..|+||||+|+..|+             ++.+|.+|+||||+|+.. 
T Consensus       170 tpLh~A~---~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~  245 (477)
T PHA02878        170 TALHYAT---ENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYC  245 (477)
T ss_pred             CHHHHHH---hCCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhc
Confidence            5555553   355555555555555555 4555555555555555555             444555555555555543 


Q ss_pred             CCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCC-CCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccc
Q 038344           68 GHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDD-NGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEV  146 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~-~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~  146 (383)
                      ++.+++++|+++|++                  +|.++. .|+||||+|  .++.++           +++|++. |+|+
T Consensus       246 ~~~~iv~~Ll~~gad------------------vn~~~~~~g~TpLh~A--~~~~~~-----------v~~Ll~~-gadi  293 (477)
T PHA02878        246 KDYDILKLLLEHGVD------------------VNAKSYILGLTALHSS--IKSERK-----------LKLLLEY-GADI  293 (477)
T ss_pred             CCHHHHHHHHHcCCC------------------CCccCCCCCCCHHHHH--ccCHHH-----------HHHHHHC-CCCC
Confidence            455555555555554                  455543 456666666  244555           5555553 6666


Q ss_pred             cccccCCCCHHHHHHh
Q 038344          147 NAVNANGFTAWDILAQ  162 (383)
Q Consensus       147 ~~~n~~G~TpL~~A~~  162 (383)
                      |..|.+|+||||+|+.
T Consensus       294 n~~d~~g~TpL~~A~~  309 (477)
T PHA02878        294 NSLNSYKLTPLSSAVK  309 (477)
T ss_pred             CCcCCCCCCHHHHHHH
Confidence            6666666666666554

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=8e-22  Score=165.13  Aligned_cols=121  Identities=18%  Similarity=0.275  Sum_probs=107.5

Q ss_pred             cccCCCCCCcHHHHHHHcCC------------------ccccCCCCCcHHHHHHHcCCH---HHHHHHHHcCCCCCchHH
Q 038344           30 ARKSDSRKSSALHIASQKGK------------------CSATDVDGRNALHLAAMEGHI---DVLEELVRAKPDAASAPL   88 (383)
Q Consensus        30 ~~~~d~~g~TpLh~Aa~~g~------------------~~~~d~~G~tpLh~A~~~g~~---~iv~~Ll~~~~~~~~~~l   88 (383)
                      .+..|.+|.||||+|+..|+                  ...+|.+|+||||+|+..|+.   +++++|++.|++      
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad------   83 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD------   83 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC------
Confidence            36678889999999999997                  123578999999999999987   468899998887      


Q ss_pred             HHHhhccCCcccccCCC-CCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCc
Q 038344           89 KSFLETREGSELLNAND-DNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDI  167 (383)
Q Consensus        89 ~~l~~~~~~~~~~n~~d-~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~  167 (383)
                                  +|.+| .+|+||||+|+..++.++           +++|+.+.|++++.+|..|.||||+|+.    .
T Consensus        84 ------------in~~~~~~g~T~Lh~A~~~~~~~i-----------~~~Ll~~~g~d~n~~~~~g~tpL~~A~~----~  136 (154)
T PHA02736         84 ------------INGKERVFGNTPLHIAVYTQNYEL-----------ATWLCNQPGVNMEILNYAFKTPYYVACE----R  136 (154)
T ss_pred             ------------ccccCCCCCCcHHHHHHHhCCHHH-----------HHHHHhCCCCCCccccCCCCCHHHHHHH----c
Confidence                        88898 599999999999999999           9999975599999999999999999999    7


Q ss_pred             chhhHHHHHHHhcCCC
Q 038344          168 KYWEIGELLRRARGNS  183 (383)
Q Consensus       168 ~~~~i~~~L~~~ga~~  183 (383)
                      ++.+++++|+++|++.
T Consensus       137 ~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736        137 HDAKMMNILRAKGAQC  152 (154)
T ss_pred             CCHHHHHHHHHcCCCC
Confidence            8899999999999886

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.86  E-value=5.9e-21  Score=199.78  Aligned_cols=145  Identities=21%  Similarity=0.244  Sum_probs=131.3

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEG   68 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g   68 (383)
                      ++||.|   |..|+.++++.|++.|.++ +..|.+|+||||+|+..|+             ++.+|.+|+||||.|+..|
T Consensus       527 ~~L~~A---a~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g  602 (823)
T PLN03192        527 SNLLTV---ASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAK  602 (823)
T ss_pred             hHHHHH---HHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhC
Confidence            567777   5699999999999999998 8899999999999999998             6778999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccc
Q 038344           69 HIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNA  148 (383)
Q Consensus        69 ~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~  148 (383)
                      +.+++++|++.+..                  .  .+..|.++||.|+.+|+.++           ++.|++. |+|+|.
T Consensus       603 ~~~iv~~L~~~~~~------------------~--~~~~~~~~L~~Aa~~g~~~~-----------v~~Ll~~-Gadin~  650 (823)
T PLN03192        603 HHKIFRILYHFASI------------------S--DPHAAGDLLCTAAKRNDLTA-----------MKELLKQ-GLNVDS  650 (823)
T ss_pred             CHHHHHHHHhcCcc------------------c--CcccCchHHHHHHHhCCHHH-----------HHHHHHC-CCCCCC
Confidence            99999999987654                  2  23567899999999999999           9999996 999999


Q ss_pred             cccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCCC
Q 038344          149 VNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAKD  186 (383)
Q Consensus       149 ~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~~  186 (383)
                      +|.+|+||||+|+.    .++.+++++|+++|++....
T Consensus       651 ~d~~G~TpLh~A~~----~g~~~iv~~Ll~~GAdv~~~  684 (823)
T PLN03192        651 EDHQGATALQVAMA----EDHVDMVRLLIMNGADVDKA  684 (823)
T ss_pred             CCCCCCCHHHHHHH----CCcHHHHHHHHHcCCCCCCC
Confidence            99999999999999    88999999999999998653

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.84  E-value=1.9e-20  Score=158.55  Aligned_cols=121  Identities=23%  Similarity=0.356  Sum_probs=100.2

Q ss_pred             CCCCCCcHHHHHHHcCC-----------------ccccCCCCCcHHHHHHHcCCHH---HHHHHHHcCCCCCchHHHHHh
Q 038344           33 SDSRKSSALHIASQKGK-----------------CSATDVDGRNALHLAAMEGHID---VLEELVRAKPDAASAPLKSFL   92 (383)
Q Consensus        33 ~d~~g~TpLh~Aa~~g~-----------------~~~~d~~G~tpLh~A~~~g~~~---iv~~Ll~~~~~~~~~~l~~l~   92 (383)
                      .+.++.++||.||+.|+                 ++.+|.+|+||||+|+..|+.+   ++++|+++|++          
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad----------   85 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD----------   85 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC----------
Confidence            44455555555555554                 2346778889999999888765   48999998887          


Q ss_pred             hccCCcccccCCC-CCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhh
Q 038344           93 ETREGSELLNAND-DNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWE  171 (383)
Q Consensus        93 ~~~~~~~~~n~~d-~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~  171 (383)
                              +|.+| ..|+||||+|+..++.++           +++|+++.|++++.+|.+|.||||+|+.    .++.+
T Consensus        86 --------in~~d~~~g~TpLh~A~~~g~~~i-----------v~~Ll~~~gad~~~~d~~g~tpL~~A~~----~~~~~  142 (166)
T PHA02743         86 --------INARELGTGNTLLHIAASTKNYEL-----------AEWLCRQLGVNLGAINYQHETAYHIAYK----MRDRR  142 (166)
T ss_pred             --------CCCCCCCCCCcHHHHHHHhCCHHH-----------HHHHHhccCCCccCcCCCCCCHHHHHHH----cCCHH
Confidence                    89998 589999999999999999           9999964599999999999999999999    78889


Q ss_pred             HHHHHHHhcCCCCCC
Q 038344          172 IGELLRRARGNSAKD  186 (383)
Q Consensus       172 i~~~L~~~ga~~~~~  186 (383)
                      ++++|+++|++...+
T Consensus       143 iv~~Ll~~ga~~~~~  157 (166)
T PHA02743        143 MMEILRANGAVCDDP  157 (166)
T ss_pred             HHHHHHHcCCCCCCc
Confidence            999999999998554

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=3e-20  Score=157.91  Aligned_cols=119  Identities=23%  Similarity=0.381  Sum_probs=100.8

Q ss_pred             cCCCCCCcHHHHHHHcCC-------------------ccccCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCchHH
Q 038344           32 KSDSRKSSALHIASQKGK-------------------CSATDVDGRNALHLAAMEGH----IDVLEELVRAKPDAASAPL   88 (383)
Q Consensus        32 ~~d~~g~TpLh~Aa~~g~-------------------~~~~d~~G~tpLh~A~~~g~----~~iv~~Ll~~~~~~~~~~l   88 (383)
                      ..|..|.||||+|+..|+                   ++.+|..|+||||+|+..|+    .+++++|+++|++      
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad------   89 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD------   89 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC------
Confidence            345566666666666655                   24567889999999999998    5889999998887      


Q ss_pred             HHHhhccCCcccccCCCC-CCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCc
Q 038344           89 KSFLETREGSELLNANDD-NGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDI  167 (383)
Q Consensus        89 ~~l~~~~~~~~~~n~~d~-~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~  167 (383)
                                  +|.+|. +|+||||+|+..++.++           +++|+...|++++..|.+|.||||+|..    .
T Consensus        90 ------------in~~~~~~g~TpLh~A~~~~~~~i-----------v~~Ll~~~g~~~~~~n~~g~tpL~~A~~----~  142 (169)
T PHA02741         90 ------------INAQEMLEGDTALHLAAHRRDHDL-----------AEWLCCQPGIDLHFCNADNKSPFELAID----N  142 (169)
T ss_pred             ------------CCCCCcCCCCCHHHHHHHcCCHHH-----------HHHHHhCCCCCCCcCCCCCCCHHHHHHH----C
Confidence                        888885 99999999999999999           9999975599999999999999999999    7


Q ss_pred             chhhHHHHHHHhcCCC
Q 038344          168 KYWEIGELLRRARGNS  183 (383)
Q Consensus       168 ~~~~i~~~L~~~ga~~  183 (383)
                      ++.+++++|++.++..
T Consensus       143 ~~~~iv~~L~~~~~~~  158 (169)
T PHA02741        143 EDVAMMQILREIVATS  158 (169)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            8889999999987653

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.83  E-value=7e-20  Score=181.89  Aligned_cols=152  Identities=13%  Similarity=0.186  Sum_probs=119.4

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------------ccccCCCCCcHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------------CSATDVDGRNAL   61 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------------~~~~d~~G~tpL   61 (383)
                      .||||.++. ...++.++++.|+++|+++ +..+ .+.||||.|+.++.                   ++.+|.+|.|||
T Consensus        36 ~t~l~~~~~-~~~~~~~iv~~Ll~~GAdv-n~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL  112 (494)
T PHA02989         36 NSILLLYLK-RKDVKIKIVKLLIDNGADV-NYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPI  112 (494)
T ss_pred             CCHHHHHHh-cCCCChHHHHHHHHcCCCc-cCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            377776643 2334788888888888887 5544 56888888876542                   667788888888


Q ss_pred             HHHHHc---CCHHHHHHHHHcCCCCCchHHHHHhhccCCcccc-cCCCCCCCcHHHHHHHc--CChhHHHHhhhchhhHH
Q 038344           62 HLAAME---GHIDVLEELVRAKPDAASAPLKSFLETREGSELL-NANDDNGMTILHLAVAD--KQIEIWITHITYKSRAI  135 (383)
Q Consensus        62 h~A~~~---g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~-n~~d~~g~TpLh~A~~~--~~~~~~~~~l~~~~~~v  135 (383)
                      |.|+..   |+.+++++|+++|++                  + +.+|..|+||||+|+..  ++.++           +
T Consensus       113 ~~a~~~~~~~~~eiv~~Ll~~Gad------------------in~~~d~~g~tpLh~a~~~~~~~~~i-----------v  163 (494)
T PHA02989        113 VCFIYNSNINNCDMLRFLLSKGIN------------------VNDVKNSRGYNLLHMYLESFSVKKDV-----------I  163 (494)
T ss_pred             HHHHHhcccCcHHHHHHHHHCCCC------------------cccccCCCCCCHHHHHHHhccCCHHH-----------H
Confidence            877655   577888888888877                  7 78999999999998764  57888           9


Q ss_pred             HHhhhcccccccc-cccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          136 KFFTTSTAIEVNA-VNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       136 ~~Ll~~~g~d~~~-~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      ++|++. |+|++. .|..|.||||+|+....+.++.+++++|+++|++...
T Consensus       164 ~~Ll~~-Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~  213 (494)
T PHA02989        164 KILLSF-GVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIET  213 (494)
T ss_pred             HHHHHc-CCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccc
Confidence            999996 999998 6889999999998755445688999999999998754

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.83  E-value=2e-20  Score=182.36  Aligned_cols=168  Identities=23%  Similarity=0.228  Sum_probs=107.9

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      ++|||+|   +..|+.++++.|++.+.++ +..|+.|.||||+||..++             +...|.+|++|+|.|+++
T Consensus       122 ~aplh~A---~~~~~~s~L~~Ll~~~~dv-nl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s  197 (929)
T KOG0510|consen  122 NAPLHLA---ADSGNYSCLKLLLDYGADV-NLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARS  197 (929)
T ss_pred             cCchhhc---cccchHHHHHHHHHhcCCc-cccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHh
Confidence            3677777   4477777777777777766 6777777777777777776             334566677777777777


Q ss_pred             CCHHHHHHHHHcC-----CCCCch------------------HHHHHhhccC------------CcccccCCCCCCCcHH
Q 038344           68 GHIDVLEELVRAK-----PDAASA------------------PLKSFLETRE------------GSELLNANDDNGMTIL  112 (383)
Q Consensus        68 g~~~iv~~Ll~~~-----~~~~~~------------------~l~~l~~~~~------------~~~~~n~~d~~g~TpL  112 (383)
                      |..|+.+.++.+.     .+.+..                  .++..++.+.            ...++|..|++|.|||
T Consensus       198 ~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpL  277 (929)
T KOG0510|consen  198 GSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPL  277 (929)
T ss_pred             cchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchH
Confidence            7777777766621     111111                  3344443331            1235788899999999


Q ss_pred             HHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhcc----------------------------
Q 038344          113 HLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSK----------------------------  164 (383)
Q Consensus       113 h~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~----------------------------  164 (383)
                      |+|++.|+.+.           +..|+.. |++++.+|+++.||||.|+..+                            
T Consensus       278 H~a~r~G~~~s-----------vd~Ll~~-Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpL  345 (929)
T KOG0510|consen  278 HYAARQGGPES-----------VDNLLGF-GASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPL  345 (929)
T ss_pred             HHHHHcCChhH-----------HHHHHHc-CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCch
Confidence            99999999999           5555553 5555555555555555555410                            


Q ss_pred             ---CCcchhhHHHHHHHhcCCCC
Q 038344          165 ---RDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       165 ---~~~~~~~i~~~L~~~ga~~~  184 (383)
                         ...++.+++++|++.||...
T Consensus       346 Hlaa~~gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  346 HLAAKSGHDRVVQLLLNKGALFL  368 (929)
T ss_pred             hhhhhcCHHHHHHHHHhcChhhh
Confidence               00566677888888888764

>PHA02798 ankyrin-like protein; Provisional

Probab=99.83  E-value=8.3e-20  Score=181.13  Aligned_cols=152  Identities=18%  Similarity=0.218  Sum_probs=131.4

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHc-----CC-------------ccccCCCCCcHHHH
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQK-----GK-------------CSATDVDGRNALHL   63 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~-----g~-------------~~~~d~~G~tpLh~   63 (383)
                      |+++..++ ...++.++++.|+++|+++ +..|..|.||||.|+.+     ++             ++.+|.+|+||||+
T Consensus        38 ~~~~~yl~-~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~  115 (489)
T PHA02798         38 SIFQKYLQ-RDSPSTDIVKLFINLGANV-NGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYC  115 (489)
T ss_pred             hHHHHHHh-CCCCCHHHHHHHHHCCCCC-CCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHH
Confidence            66665543 4467899999999999998 88899999999999864     22             78899999999999


Q ss_pred             HHHcC---CHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCC---hhHHHHhhhchhhHHHH
Q 038344           64 AAMEG---HIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQ---IEIWITHITYKSRAIKF  137 (383)
Q Consensus        64 A~~~g---~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~---~~~~~~~l~~~~~~v~~  137 (383)
                      |+.++   +.+++++|+++|++                  +|.+|.+|.||||+|+..++   .++           +++
T Consensus       116 a~~~~~~~~~~iv~~Ll~~Gad------------------vn~~d~~g~tpL~~a~~~~~~~~~~v-----------v~~  166 (489)
T PHA02798        116 LLSNGYINNLEILLFMIENGAD------------------TTLLDKDGFTMLQVYLQSNHHIDIEI-----------IKL  166 (489)
T ss_pred             HHHcCCcChHHHHHHHHHcCCC------------------ccccCCCCCcHHHHHHHcCCcchHHH-----------HHH
Confidence            99986   78999999999988                  89999999999999999987   888           999


Q ss_pred             hhhcccccccccc-cCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          138 FTTSTAIEVNAVN-ANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       138 Ll~~~g~d~~~~n-~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      |++. |+|++..| ..|.||||.+.....+..+.+++++|+++|++...
T Consensus       167 Ll~~-gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~  214 (489)
T PHA02798        167 LLEK-GVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINK  214 (489)
T ss_pred             HHHh-CCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCccc
Confidence            9996 99999885 57999999988754445678999999999998754

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.82  E-value=7.6e-21  Score=195.54  Aligned_cols=164  Identities=26%  Similarity=0.315  Sum_probs=119.8

Q ss_pred             cCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC--------------ccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 038344           13 LGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------CSATDVDGRNALHLAAMEGHIDVLEELVR   78 (383)
Q Consensus        13 ~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~--------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~   78 (383)
                      .++.++++.+++++++. +..+..|.||+|+|+..|+              ++..-..|.||||+|++.|+.+++..+++
T Consensus       417 ~~~~~~v~l~l~~gA~~-~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle  495 (1143)
T KOG4177|consen  417 YGNPRVVKLLLKRGASP-NAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLE  495 (1143)
T ss_pred             ccCcceEEEEeccCCCh-hhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhh
Confidence            44444444444444444 4445555555555555552              45566778888888888888888888887


Q ss_pred             cCCCCCch------H---------HHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccc
Q 038344           79 AKPDAASA------P---------LKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTA  143 (383)
Q Consensus        79 ~~~~~~~~------~---------l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g  143 (383)
                      .++.....      .         +.........+..++.++.+|+||||.|+.+|+.++           |++|+++ |
T Consensus       496 ~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~-----------VkfLLe~-g  563 (1143)
T KOG4177|consen  496 GGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDL-----------VKFLLEH-G  563 (1143)
T ss_pred             cCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchH-----------HHHhhhC-C
Confidence            66332211      1         122222234788899999999999999999999999           9999996 9


Q ss_pred             ccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCCCCCCchhh
Q 038344          144 IEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAKDMHLPANE  193 (383)
Q Consensus       144 ~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~~l~~~~~~  193 (383)
                      +|++.+++.|+||||.|+.    .++.+++++|+++||+++..-.+....
T Consensus       564 Adv~ak~~~G~TPLH~Aa~----~G~~~i~~LLlk~GA~vna~d~~g~Tp  609 (1143)
T KOG4177|consen  564 ADVNAKDKLGYTPLHQAAQ----QGHNDIAELLLKHGASVNAADLDGFTP  609 (1143)
T ss_pred             ccccccCCCCCChhhHHHH----cChHHHHHHHHHcCCCCCcccccCcch
Confidence            9999999999999999999    889999999999999997655544433

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=1.6e-20  Score=172.75  Aligned_cols=148  Identities=25%  Similarity=0.309  Sum_probs=114.4

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCccccc--------CCCCCCcHHHHHHHcCC-------------ccccCCCCCcH
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARK--------SDSRKSSALHIASQKGK-------------CSATDVDGRNA   60 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~--------~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tp   60 (383)
                      |||-+|   |++||.++|++|+++...-...        ...+|-+||-.|+..||             +|.......||
T Consensus        44 tPL~ia---aRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStP  120 (615)
T KOG0508|consen   44 TPLLIA---ARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTP  120 (615)
T ss_pred             Cceeee---hhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCcc
Confidence            777777   5588888888888853211121        13457778888888888             44445556788


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhh
Q 038344           61 LHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTT  140 (383)
Q Consensus        61 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~  140 (383)
                      |--||.-|+.|++|+|+++|+|                  ++..|..|+|.||+||.+|+.++           +++|++
T Consensus       121 LraACfDG~leivKyLvE~gad------------------~~IanrhGhTcLmIa~ykGh~~I-----------~qyLle  171 (615)
T KOG0508|consen  121 LRAACFDGHLEIVKYLVEHGAD------------------PEIANRHGHTCLMIACYKGHVDI-----------AQYLLE  171 (615)
T ss_pred             HHHHHhcchhHHHHHHHHcCCC------------------CcccccCCCeeEEeeeccCchHH-----------HHHHHH
Confidence            8888888888888888888877                  78888888888888888888888           888888


Q ss_pred             cccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCCC
Q 038344          141 STAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAKD  186 (383)
Q Consensus       141 ~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~~  186 (383)
                      . |+|+|.++..|+|+||.++.    .++.|++++|+++|+....+
T Consensus       172 ~-gADvn~ks~kGNTALH~caE----sG~vdivq~Ll~~ga~i~~d  212 (615)
T KOG0508|consen  172 Q-GADVNAKSYKGNTALHDCAE----SGSVDIVQLLLKHGAKIDVD  212 (615)
T ss_pred             h-CCCcchhcccCchHHHhhhh----cccHHHHHHHHhCCceeeec
Confidence            6 88888888888888888888    78888888888888876543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.82  E-value=3.4e-20  Score=190.84  Aligned_cols=145  Identities=26%  Similarity=0.377  Sum_probs=121.8

Q ss_pred             CChHHHHHHHHHcC-CHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC------------------------------
Q 038344            1 MTILQLAVAAALLG-HEDFVNEILCQKPELARKSDSRKSSALHIASQKGK------------------------------   49 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g-~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~------------------------------   49 (383)
                      +||+|.|   +..| ..+....+++.+.++ +..-..|.||||.|+..|+                              
T Consensus       441 ~T~lhva---a~~g~~~~~~~~l~~~g~~~-n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~  516 (1143)
T KOG4177|consen  441 YTPLHVA---AKKGRYLQIARLLLQYGADP-NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAAD  516 (1143)
T ss_pred             CChhhhh---hhcccHhhhhhhHhhcCCCc-chhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhh
Confidence            4666666   3355 555555566666555 5556666666666666666                              


Q ss_pred             ----------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHH
Q 038344           50 ----------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILH  113 (383)
Q Consensus        50 ----------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh  113 (383)
                                      ++.++.+|+||||.|+.+|+.++|++|+++|++                  ++.+|+.|+||||
T Consensus       517 ~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd------------------v~ak~~~G~TPLH  578 (1143)
T KOG4177|consen  517 EDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD------------------VNAKDKLGYTPLH  578 (1143)
T ss_pred             hhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcc------------------ccccCCCCCChhh
Confidence                            567788899999999999999999999999888                  8999999999999


Q ss_pred             HHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCC
Q 038344          114 LAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNS  183 (383)
Q Consensus       114 ~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~  183 (383)
                      .||..|+.++           +++|++. |+++|..|.+|.|||++|..    .++.++++.|+..|+.+
T Consensus       579 ~Aa~~G~~~i-----------~~LLlk~-GA~vna~d~~g~TpL~iA~~----lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  579 QAAQQGHNDI-----------AELLLKH-GASVNAADLDGFTPLHIAVR----LGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             HHHHcChHHH-----------HHHHHHc-CCCCCcccccCcchhHHHHH----hcccchhhHHHhccCcc
Confidence            9999999999           9999996 99999999999999999999    89999999999999993

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.81  E-value=5.7e-20  Score=164.21  Aligned_cols=142  Identities=25%  Similarity=0.304  Sum_probs=128.5

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-----------------ccccC-CCCCcHHHH
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-----------------CSATD-VDGRNALHL   63 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-----------------~~~~d-~~G~tpLh~   63 (383)
                      |+||+++   .++|.++|+.||+.|.-.++..|.-|.||+++++...-                 +|.+- ..|+|+|++
T Consensus       270 TALHYsV---SHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALML  346 (452)
T KOG0514|consen  270 TALHYAV---SHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALML  346 (452)
T ss_pred             eeeeeee---cccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhh
Confidence            8999995   49999999999999977779999999999999986432                 55544 359999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccc
Q 038344           64 AAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTA  143 (383)
Q Consensus        64 A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g  143 (383)
                      |+.+|+.++||.||..|+|                  +|.+|.+|.|+|+.|+.+|+.++           +++||...+
T Consensus       347 AVSHGr~d~vk~LLacgAd------------------VNiQDdDGSTALMCA~EHGhkEi-----------vklLLA~p~  397 (452)
T KOG0514|consen  347 AVSHGRVDMVKALLACGAD------------------VNIQDDDGSTALMCAAEHGHKEI-----------VKLLLAVPS  397 (452)
T ss_pred             hhhcCcHHHHHHHHHccCC------------------CccccCCccHHHhhhhhhChHHH-----------HHHHhccCc
Confidence            9999999999999998888                  99999999999999999999999           999999999


Q ss_pred             ccccccccCCCCHHHHHHhccCCcchhhHHHHHHHh
Q 038344          144 IEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRA  179 (383)
Q Consensus       144 ~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~  179 (383)
                      +|+...|.+|.|+|.+|..    .++.||.-+|..+
T Consensus       398 cd~sLtD~DgSTAl~IAle----agh~eIa~mlYa~  429 (452)
T KOG0514|consen  398 CDISLTDVDGSTALSIALE----AGHREIAVMLYAH  429 (452)
T ss_pred             ccceeecCCCchhhhhHHh----cCchHHHHHHHHH
Confidence            9999999999999999999    8899998887654

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.80  E-value=4.1e-19  Score=143.23  Aligned_cols=132  Identities=24%  Similarity=0.274  Sum_probs=98.1

Q ss_pred             hHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcCC
Q 038344            3 ILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEGH   69 (383)
Q Consensus         3 pLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g~   69 (383)
                      |..+-..|+..+....|+.||+..++.+|.+|.+|.||||-|+++|+             .+.+..+|+||||-||..++
T Consensus        63 p~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   63 PIRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccc
Confidence            44555566889999999999999999988888877777777777777             45566677777777777777


Q ss_pred             HHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccccc
Q 038344           70 IDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAV  149 (383)
Q Consensus        70 ~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~  149 (383)
                      .+++..|+++|+|                  +|.+.....||||+|+..++...          .+++|+...+++....
T Consensus       143 ~~va~~LLqhgaD------------------VnA~t~g~ltpLhlaa~~rn~r~----------t~~~Ll~dryi~pg~~  194 (228)
T KOG0512|consen  143 FEVAGRLLQHGAD------------------VNAQTKGLLTPLHLAAGNRNSRD----------TLELLLHDRYIHPGLK  194 (228)
T ss_pred             hhHHHHHHhccCc------------------ccccccccchhhHHhhcccchHH----------HHHHHhhccccChhhh
Confidence            7777777777776                  77777777777777776654433          1566666667777777


Q ss_pred             ccCCCCHHHHHHh
Q 038344          150 NANGFTAWDILAQ  162 (383)
Q Consensus       150 n~~G~TpL~~A~~  162 (383)
                      ++.+.||+++|-+
T Consensus       195 nn~eeta~~iARR  207 (228)
T KOG0512|consen  195 NNLEETAFDIARR  207 (228)
T ss_pred             cCccchHHHHHHH
Confidence            7777777777765

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.79  E-value=1.1e-18  Score=147.62  Aligned_cols=121  Identities=17%  Similarity=0.181  Sum_probs=104.3

Q ss_pred             CChHHHHHHHHHcCCH----HHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC----------------ccccC-CCCCc
Q 038344            1 MTILQLAVAAALLGHE----DFVNEILCQKPELARKSDSRKSSALHIASQKGK----------------CSATD-VDGRN   59 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~----------------~~~~d-~~G~t   59 (383)
                      +++||.||   +.|+.    ++++.|++.++.+ +..|.+|+||||+|+..|+                ++.+| ..|.|
T Consensus        21 ~~~l~~a~---~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~T   96 (166)
T PHA02743         21 QNTFLRIC---RTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNT   96 (166)
T ss_pred             CcHHHHHH---HcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCc
Confidence            36888885   48987    5566677777776 7889999999999999876                56677 48999


Q ss_pred             HHHHHHHcCCHHHHHHHHH-cCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHh
Q 038344           60 ALHLAAMEGHIDVLEELVR-AKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFF  138 (383)
Q Consensus        60 pLh~A~~~g~~~iv~~Ll~-~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~L  138 (383)
                      |||+|+..|+.+++++|++ .+.+                  ++.+|.+|.||||+|+..++.++           +++|
T Consensus        97 pLh~A~~~g~~~iv~~Ll~~~gad------------------~~~~d~~g~tpL~~A~~~~~~~i-----------v~~L  147 (166)
T PHA02743         97 LLHIAASTKNYELAEWLCRQLGVN------------------LGAINYQHETAYHIAYKMRDRRM-----------MEIL  147 (166)
T ss_pred             HHHHHHHhCCHHHHHHHHhccCCC------------------ccCcCCCCCCHHHHHHHcCCHHH-----------HHHH
Confidence            9999999999999999995 6776                  88999999999999999999999           9999


Q ss_pred             hhcccccccccccCCCC
Q 038344          139 TTSTAIEVNAVNANGFT  155 (383)
Q Consensus       139 l~~~g~d~~~~n~~G~T  155 (383)
                      ++. |++++..+..|..
T Consensus       148 l~~-ga~~~~~~~~~~~  163 (166)
T PHA02743        148 RAN-GAVCDDPLSIGLS  163 (166)
T ss_pred             HHc-CCCCCCcccCCcc
Confidence            996 9999999888753

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.79  E-value=7.7e-19  Score=183.92  Aligned_cols=128  Identities=21%  Similarity=0.332  Sum_probs=116.8

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-----------ccccCCCCCcHHHHHHHcCC
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-----------CSATDVDGRNALHLAAMEGH   69 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-----------~~~~d~~G~tpLh~A~~~g~   69 (383)
                      +||||+|   |..|+.++++.|+++|+++ +.+|.+|+||||+|+..|+           ....+..|.+|||.|+.+|+
T Consensus       559 ~TpLh~A---a~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~  634 (823)
T PLN03192        559 RTPLHIA---ASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRND  634 (823)
T ss_pred             CCHHHHH---HHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCC
Confidence            5999999   4599999999999999998 8899999999999999999           12234568899999999999


Q ss_pred             HHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccccc
Q 038344           70 IDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAV  149 (383)
Q Consensus        70 ~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~  149 (383)
                      .++++.|+++|++                  +|.+|.+|+||||+|+..|+.++           +++|+++ |+|++..
T Consensus       635 ~~~v~~Ll~~Gad------------------in~~d~~G~TpLh~A~~~g~~~i-----------v~~Ll~~-GAdv~~~  684 (823)
T PLN03192        635 LTAMKELLKQGLN------------------VDSEDHQGATALQVAMAEDHVDM-----------VRLLIMN-GADVDKA  684 (823)
T ss_pred             HHHHHHHHHCCCC------------------CCCCCCCCCCHHHHHHHCCcHHH-----------HHHHHHc-CCCCCCC
Confidence            9999999999988                  89999999999999999999999           9999996 9999999


Q ss_pred             ccCC-CCHHHHHHh
Q 038344          150 NANG-FTAWDILAQ  162 (383)
Q Consensus       150 n~~G-~TpL~~A~~  162 (383)
                      |.+| .||++++..
T Consensus       685 ~~~g~~t~~~l~~~  698 (823)
T PLN03192        685 NTDDDFSPTELREL  698 (823)
T ss_pred             CCCCCCCHHHHHHH
Confidence            9988 999998765

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.78  E-value=6.5e-19  Score=162.25  Aligned_cols=138  Identities=23%  Similarity=0.349  Sum_probs=124.6

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEG   68 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g   68 (383)
                      +||--|   +..||.++|+.|+++++++ |.......|||--||..|+             ++..|+.|.|.||+||..|
T Consensus        86 ppLWaA---saAGHl~vVk~L~~~ga~V-N~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykG  161 (615)
T KOG0508|consen   86 PPLWAA---SAAGHLEVVKLLLRRGASV-NDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKG  161 (615)
T ss_pred             chhhHH---hccCcHHHHHHHHHhcCcc-ccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccC
Confidence            354444   4589999999999999888 7777788899999999999             7789999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccc
Q 038344           69 HIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNA  148 (383)
Q Consensus        69 ~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~  148 (383)
                      |.+|+++|++.|+|                  +|.++..|||+||.++..|+.++           +++|+.. |+.++ 
T Consensus       162 h~~I~qyLle~gAD------------------vn~ks~kGNTALH~caEsG~vdi-----------vq~Ll~~-ga~i~-  210 (615)
T KOG0508|consen  162 HVDIAQYLLEQGAD------------------VNAKSYKGNTALHDCAESGSVDI-----------VQLLLKH-GAKID-  210 (615)
T ss_pred             chHHHHHHHHhCCC------------------cchhcccCchHHHhhhhcccHHH-----------HHHHHhC-Cceee-
Confidence            99999999999988                  99999999999999999999999           9999995 88775 


Q ss_pred             cccCCCCHHHHHHhccCCcchhhHHHHHHH
Q 038344          149 VNANGFTAWDILAQSKRDIKYWEIGELLRR  178 (383)
Q Consensus       149 ~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~  178 (383)
                      +|..|.|||..|+.    .+..++++.|++
T Consensus       211 ~d~~GmtPL~~Aa~----tG~~~iVe~L~~  236 (615)
T KOG0508|consen  211 VDGHGMTPLLLAAV----TGHTDIVERLLQ  236 (615)
T ss_pred             ecCCCCchHHHHhh----hcchHHHHHHhc
Confidence            46779999999999    888999999986

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.77  E-value=8.5e-19  Score=146.62  Aligned_cols=142  Identities=24%  Similarity=0.236  Sum_probs=115.4

Q ss_pred             HcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC------------------------------------------
Q 038344           12 LLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK------------------------------------------   49 (383)
Q Consensus        12 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~------------------------------------------   49 (383)
                      ..|+.+.+.....-+++.+...|.+|+.++|.++-.|+                                          
T Consensus        71 ~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~  150 (296)
T KOG0502|consen   71 RSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVN  150 (296)
T ss_pred             hcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhh
Confidence            35677777777777777667777778887777776665                                          


Q ss_pred             --ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHh
Q 038344           50 --CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITH  127 (383)
Q Consensus        50 --~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~  127 (383)
                        +|..|+.|.|||.+|+..|++++|++|++.|+|                  ++..-+...++|.+|++.|..++    
T Consensus       151 n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAd------------------p~~lgk~resALsLAt~ggytdi----  208 (296)
T KOG0502|consen  151 NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGAD------------------PDALGKYRESALSLATRGGYTDI----  208 (296)
T ss_pred             ccccCccccCchHhHHHHhcCchHHHHHHHHcCCC------------------hhhhhhhhhhhHhHHhcCChHHH----
Confidence              678899999999999999999999999999988                  66666777788888888888888    


Q ss_pred             hhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCCCC
Q 038344          128 ITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAKDM  187 (383)
Q Consensus       128 l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~~l  187 (383)
                             |++|+.+ ++|+|..|.+|-|||-+|++    -++.++++.|++.||++..+-
T Consensus       209 -------V~lLL~r-~vdVNvyDwNGgTpLlyAvr----gnhvkcve~Ll~sGAd~t~e~  256 (296)
T KOG0502|consen  209 -------VELLLTR-EVDVNVYDWNGGTPLLYAVR----GNHVKCVESLLNSGADVTQED  256 (296)
T ss_pred             -------HHHHHhc-CCCcceeccCCCceeeeeec----CChHHHHHHHHhcCCCccccc
Confidence                   8888885 88888888888888888887    677888888888888875543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.76  E-value=4.6e-19  Score=153.91  Aligned_cols=139  Identities=26%  Similarity=0.289  Sum_probs=115.8

Q ss_pred             HcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 038344           12 LLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEGHIDVLEELVR   78 (383)
Q Consensus        12 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~   78 (383)
                      +.|+.--|+.-|+......|..|..|.+|||+||..|+             +|..+....||||+|+.+||-++|..|++
T Consensus         9 regna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~   88 (448)
T KOG0195|consen    9 REGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLS   88 (448)
T ss_pred             hcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHH
Confidence            35555455555655555558889999999999999998             67778888999999999999999999999


Q ss_pred             cCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHH
Q 038344           79 AKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWD  158 (383)
Q Consensus        79 ~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~  158 (383)
                      ..+|                  +|..++.|+|||||||..|+..+           .+-|+.. |+.++..|++|.|||+
T Consensus        89 ~kad------------------vnavnehgntplhyacfwgydqi-----------aedli~~-ga~v~icnk~g~tpld  138 (448)
T KOG0195|consen   89 RKAD------------------VNAVNEHGNTPLHYACFWGYDQI-----------AEDLISC-GAAVNICNKKGMTPLD  138 (448)
T ss_pred             Hhcc------------------cchhhccCCCchhhhhhhcHHHH-----------HHHHHhc-cceeeecccCCCCchh
Confidence            8887                  99999999999999999999999           9999996 9999999999999999


Q ss_pred             HHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          159 ILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       159 ~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      .|.-    .-...+.+.-.++|-+++
T Consensus       139 kakp----~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  139 KAKP----MLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             hhch----HHHHHHHHHHHHhCCCCC
Confidence            8754    333345556666777665

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.75  E-value=2.4e-16  Score=164.13  Aligned_cols=158  Identities=14%  Similarity=0.079  Sum_probs=114.4

Q ss_pred             CChHH-HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC------------cc--------------cc
Q 038344            1 MTILQ-LAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK------------CS--------------AT   53 (383)
Q Consensus         1 ~TpLh-~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~------------~~--------------~~   53 (383)
                      +|||| .|   +..++.++++.|++.+.     .+..|.||||.|+..+.            ..              ..
T Consensus        53 ~t~Lh~~A---~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~  124 (743)
T TIGR00870        53 RSALFVAA---IENENLELTELLLNLSC-----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSE  124 (743)
T ss_pred             hhHHHHHH---HhcChHHHHHHHHhCCC-----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccc
Confidence            58999 55   45888999999988876     57789999999987443            00              01


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHH-HHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchh
Q 038344           54 DVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPL-KSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKS  132 (383)
Q Consensus        54 d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l-~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~  132 (383)
                      +..|.||||+|+.+|+.+++++|+++|++...... ....+     ..-......|.||||.|+..|+.++         
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~-----~~~~~~~~~g~tpL~~Aa~~~~~~i---------  190 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVK-----SQGVDSFYHGESPLNAAACLGSPSI---------  190 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhc-----CCCCCcccccccHHHHHHHhCCHHH---------
Confidence            24699999999999999999999999988431100 00000     0000112469999999999999999         


Q ss_pred             hHHHHhhhcccccccccccCCCCHHHHHHhccCCc-----chhhHHHHHHHhcCCC
Q 038344          133 RAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDI-----KYWEIGELLRRARGNS  183 (383)
Q Consensus       133 ~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~-----~~~~i~~~L~~~ga~~  183 (383)
                        +++|++. |+|+|.+|+.|+||||+|+..+...     ....+.+++++.+++.
T Consensus       191 --v~lLl~~-gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~  243 (743)
T TIGR00870       191 --VALLSED-PADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKL  243 (743)
T ss_pred             --HHHHhcC-CcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence              9999996 9999999999999999999832110     1234667777777664

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02730 ankyrin-like protein; Provisional

Probab=99.75  E-value=2.1e-17  Score=164.13  Aligned_cols=157  Identities=15%  Similarity=0.107  Sum_probs=119.7

Q ss_pred             CChHHHHHHHHHcC---CHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcC--C---------------ccccCCCCCcH
Q 038344            1 MTILQLAVAAALLG---HEDFVNEILCQKPELARKSDSRKSSALHIASQKG--K---------------CSATDVDGRNA   60 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g---~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g--~---------------~~~~d~~G~tp   60 (383)
                      +||||+|+.   .|   +.|+++.|+++|+++ +.+|.+|+||||+|+..+  +               .+..|..+.+|
T Consensus        42 ~TaLh~A~~---~~~~~~~eivklLLs~GAdi-n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~  117 (672)
T PHA02730         42 NNALHCYVS---NKCDTDIKIVRLLLSRGVER-LCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFD  117 (672)
T ss_pred             CcHHHHHHH---cCCcCcHHHHHHHHhCCCCC-cccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCch
Confidence            599999954   55   699999999999999 788999999999999977  3               13466668999


Q ss_pred             HHHHHH--cCCHHHHHHHHH-cCCCCCc-----------h------------HHHHHhhccCCccccc-------CCCCC
Q 038344           61 LHLAAM--EGHIDVLEELVR-AKPDAAS-----------A------------PLKSFLETREGSELLN-------ANDDN  107 (383)
Q Consensus        61 Lh~A~~--~g~~~iv~~Ll~-~~~~~~~-----------~------------~l~~l~~~~~~~~~~n-------~~d~~  107 (383)
                      ||.++.  +++.|++++|++ .+.+..+           .            .+++|++.   |+.++       ..|..
T Consensus       118 l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~---g~~v~g~~~~~~~~~~~  194 (672)
T PHA02730        118 LYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKS---ECYSTGYVFRSCMYDSD  194 (672)
T ss_pred             HHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHc---CCcccccccccccccCC
Confidence            999988  899999999996 4333110           0            67888874   44443       23444


Q ss_pred             CC-cHHHHHH------HcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHH
Q 038344          108 GM-TILHLAV------ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRR  178 (383)
Q Consensus       108 g~-TpLh~A~------~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~  178 (383)
                      +. |.||++.      .+++.++           +++|++. |+|+|.+|.+|.||||++....  .++.|++++|++
T Consensus       195 ~c~~~l~~~il~~~~~~~n~~ei-----------v~lLIs~-GadIN~kd~~G~TpLh~~~~~~--~~~~eiv~~Li~  258 (672)
T PHA02730        195 RCKNSLHYYILSHRESESLSKDV-----------IKCLIDN-NVSIHGRDEGGSLPIQYYWSCS--TIDIEIVKLLIK  258 (672)
T ss_pred             ccchhHHHHHHhhhhhhccCHHH-----------HHHHHHC-CCCCCCCCCCCCCHHHHHHHcC--cccHHHHHHHHh
Confidence            44 5556443      4456777           9999996 9999999999999999743311  456899999999

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.75  E-value=1.3e-17  Score=152.30  Aligned_cols=111  Identities=16%  Similarity=0.177  Sum_probs=73.8

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKP   81 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~   81 (383)
                      ++||.|   +..|+.++++.|+++|+++ +.++.                ..|.+|.||||+|+..|+.+++++|+++|+
T Consensus        35 ~lL~~A---~~~~~~eivk~LL~~GAdi-N~~~~----------------~sd~~g~TpLh~Aa~~~~~eivklLL~~GA   94 (300)
T PHA02884         35 NILYSS---IKFHYTDIIDAILKLGADP-EAPFP----------------LSENSKTNPLIYAIDCDNDDAAKLLIRYGA   94 (300)
T ss_pred             HHHHHH---HHcCCHHHHHHHHHCCCCc-cccCc----------------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            455665   5589999999999999987 44321                123456666666666666666666666666


Q ss_pred             CCCchHHHHHhhccCCcccccCC-CCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHH
Q 038344           82 DAASAPLKSFLETREGSELLNAN-DDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDIL  160 (383)
Q Consensus        82 ~~~~~~l~~l~~~~~~~~~~n~~-d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A  160 (383)
                      +                  +|.+ +..|.||||+|+..++.++           +++|++. |++++.+|.+|.||||+|
T Consensus        95 D------------------VN~~~~~~g~TpLh~Aa~~~~~ei-----------vklLL~~-GAdin~kd~~G~TpL~~A  144 (300)
T PHA02884         95 D------------------VNRYAEEAKITPLYISVLHGCLKC-----------LEILLSY-GADINIQTNDMVTPIELA  144 (300)
T ss_pred             C------------------cCcccCCCCCCHHHHHHHcCCHHH-----------HHHHHHC-CCCCCCCCCCCCCHHHHH
Confidence            5                  5654 3456666666666666666           6666664 666666666666666666


Q ss_pred             Hh
Q 038344          161 AQ  162 (383)
Q Consensus       161 ~~  162 (383)
                      +.
T Consensus       145 ~~  146 (300)
T PHA02884        145 LM  146 (300)
T ss_pred             HH
Confidence            65

>PHA02792 ankyrin-like protein; Provisional

Probab=99.75  E-value=2.6e-17  Score=161.85  Aligned_cols=168  Identities=16%  Similarity=0.185  Sum_probs=134.4

Q ss_pred             CChHHHHHHHHHcC-------CHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC------------------------
Q 038344            1 MTILQLAVAAALLG-------HEDFVNEILCQKPELARKSDSRKSSALHIASQKGK------------------------   49 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g-------~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~------------------------   49 (383)
                      .||||+++.   .+       +.|+++.|+++|+++ +..|..|.||||+|+...+                        
T Consensus       176 ~t~L~~~i~---~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~  251 (631)
T PHA02792        176 KTVLYYYII---TRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILS  251 (631)
T ss_pred             CchHHHHHh---hCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHH
Confidence            499999954   66       799999999999999 7789999999999999883                        


Q ss_pred             --------------------------------------------------------------------------------
Q 038344           50 --------------------------------------------------------------------------------   49 (383)
Q Consensus        50 --------------------------------------------------------------------------------   49 (383)
                                                                                                      
T Consensus       252 ~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~G  331 (631)
T PHA02792        252 NYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEG  331 (631)
T ss_pred             HHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCC
Confidence                                                                                            


Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCch--------HHHH-----------Hhhc-cCCcccccCCCCCCC
Q 038344           50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA--------PLKS-----------FLET-REGSELLNANDDNGM  109 (383)
Q Consensus        50 ~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~--------~l~~-----------l~~~-~~~~~~~n~~d~~g~  109 (383)
                      .+.....+..++|.|+..|+.+++++|+++|++....        +++.           +++. ...++++|.+|..|+
T Consensus       332 a~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~  411 (631)
T PHA02792        332 ATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGR  411 (631)
T ss_pred             CccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCc
Confidence            1111123566799999999999999999999887432        2221           1221 247788999999999


Q ss_pred             cHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhcc--C----CcchhhHHHHHHHhcCCC
Q 038344          110 TILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSK--R----DIKYWEIGELLRRARGNS  183 (383)
Q Consensus       110 TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~--~----~~~~~~i~~~L~~~ga~~  183 (383)
                      ||||+|+..++.++           +++|++. |+++|.+|..|+||||+|....  .    .....++++.|+++|+++
T Consensus       412 TPLh~Aa~~~n~ei-----------velLLs~-GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        412 SILYYCIESHSVSL-----------VEWLIDN-GADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             chHHHHHHcCCHHH-----------HHHHHHC-CCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence            99999999999999           9999996 9999999999999999987511  1    022356899999999776


Q ss_pred             C
Q 038344          184 A  184 (383)
Q Consensus       184 ~  184 (383)
                      .
T Consensus       480 ~  480 (631)
T PHA02792        480 E  480 (631)
T ss_pred             h
Confidence            3

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.75  E-value=4.3e-18  Score=159.63  Aligned_cols=160  Identities=23%  Similarity=0.257  Sum_probs=139.9

Q ss_pred             HHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcCCHHHHHH
Q 038344            9 AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEGHIDVLEE   75 (383)
Q Consensus         9 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g~~~iv~~   75 (383)
                      .|+..|+.+-++.|+..+.++ +..+.+|.|+||-+|...+             ++..|.+|+||||.|+..||..++++
T Consensus        46 ~A~~~~d~~ev~~ll~~ga~~-~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~  124 (527)
T KOG0505|consen   46 EACSRGDLEEVRKLLNRGASP-NLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEY  124 (527)
T ss_pred             hccccccHHHHHHHhccCCCc-cccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHH
Confidence            356789999999999999888 8899999999999999988             78899999999999999999999999


Q ss_pred             HHHcCCCCCch-----------------------------------------HHHHHhhccCCcccccCCCCCCCcHHHH
Q 038344           76 LVRAKPDAASA-----------------------------------------PLKSFLETREGSELLNANDDNGMTILHL  114 (383)
Q Consensus        76 Ll~~~~~~~~~-----------------------------------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~  114 (383)
                      |+++|++....                                         .++-+..+...+...+..+..|.|.||.
T Consensus       125 li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHv  204 (527)
T KOG0505|consen  125 LIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHV  204 (527)
T ss_pred             HHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHH
Confidence            99998875322                                         1222222335666778888889999999


Q ss_pred             HHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          115 AVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       115 A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      |+.+|..++           .++|++. |.+++.+|.+|+||||.|+.    ++..+..++|+++|++...
T Consensus       205 Aaa~Gy~e~-----------~~lLl~a-g~~~~~~D~dgWtPlHAAA~----Wg~~~~~elL~~~ga~~d~  259 (527)
T KOG0505|consen  205 AAANGYTEV-----------AALLLQA-GYSVNIKDYDGWTPLHAAAH----WGQEDACELLVEHGADMDA  259 (527)
T ss_pred             HHhhhHHHH-----------HHHHHHh-ccCcccccccCCCcccHHHH----hhhHhHHHHHHHhhcccch
Confidence            999999999           9999996 99999999999999999999    9999999999999998843

>PHA02730 ankyrin-like protein; Provisional

Probab=99.73  E-value=2.2e-17  Score=163.95  Aligned_cols=136  Identities=17%  Similarity=0.127  Sum_probs=114.7

Q ss_pred             CCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------------ccccCCCCCcHHHH---HHHcC---
Q 038344           14 GHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------------CSATDVDGRNALHL---AAMEG---   68 (383)
Q Consensus        14 g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------------~~~~d~~G~tpLh~---A~~~g---   68 (383)
                      .+.++++.|+++|+++ +. +..|.||||+|+..++                   ++.+|.+|.||||.   |...+   
T Consensus       357 v~ieIvelLIs~GAdI-N~-k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~  434 (672)
T PHA02730        357 VSIPILRCMLDNGATM-DK-TTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGY  434 (672)
T ss_pred             CcHHHHHHHHHCCCCC-Cc-CCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccc
Confidence            4699999999999999 55 4789999999887652                   45667889999994   33332   


Q ss_pred             ------CHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcc
Q 038344           69 ------HIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTST  142 (383)
Q Consensus        69 ------~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~  142 (383)
                            ..+++++|+++|++                  +|.+|..|+||||+|+..++.++           +++|++. 
T Consensus       435 ~~~e~~~~~ivk~LIs~GAD------------------INakD~~G~TPLh~Aa~~~~~ei-----------ve~LI~~-  484 (672)
T PHA02730        435 HCYETILIDVFDILSKYMDD------------------IDMIDNENKTLLYYAVDVNNIQF-----------ARRLLEY-  484 (672)
T ss_pred             cccchhHHHHHHHHHhcccc------------------hhccCCCCCCHHHHHHHhCCHHH-----------HHHHHHC-
Confidence                  23579999999888                  99999999999999999999999           9999996 


Q ss_pred             ccccccccc-CCCCHHHHHHhccCCcchhhHHHHHHHhcCCC
Q 038344          143 AIEVNAVNA-NGFTAWDILAQSKRDIKYWEIGELLRRARGNS  183 (383)
Q Consensus       143 g~d~~~~n~-~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~  183 (383)
                      |+++|..|. .|.||+|.|+...  .++.+++++|+++|++.
T Consensus       485 GAdIN~~d~~~g~TaL~~Aa~~~--~~~~eIv~~LLs~ga~i  524 (672)
T PHA02730        485 GASVNTTSRSIINTAIQKSSYRR--ENKTKLVDLLLSYHPTL  524 (672)
T ss_pred             CCCCCCCCCcCCcCHHHHHHHhh--cCcHHHHHHHHHcCCCH
Confidence            999999997 5999999998611  25688999999999876

>PHA02741 hypothetical protein; Provisional

Probab=99.73  E-value=2.9e-17  Score=139.58  Aligned_cols=108  Identities=22%  Similarity=0.319  Sum_probs=94.0

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhc------CCcccccCCCCCCcHHHHHHHcCC-----------------ccccCC-C
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQ------KPELARKSDSRKSSALHIASQKGK-----------------CSATDV-D   56 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~------~~~~~~~~d~~g~TpLh~Aa~~g~-----------------~~~~d~-~   56 (383)
                      .||||+|+   ..|+.++++.|+..      +.++ +.+|..|+||||+|+..|+                 ++.+|. +
T Consensus        22 ~t~Lh~Aa---~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~   97 (169)
T PHA02741         22 ENFFHEAA---RCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLE   97 (169)
T ss_pred             CCHHHHHH---HcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCC
Confidence            48999994   59999999998653      3555 7889999999999999885                 566674 8


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHH-cCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHH
Q 038344           57 GRNALHLAAMEGHIDVLEELVR-AKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAI  135 (383)
Q Consensus        57 G~tpLh~A~~~g~~~iv~~Ll~-~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v  135 (383)
                      |+||||+|+..++.+++++|++ .+++                  ++.+|.+|+||||+|+..++.++           +
T Consensus        98 g~TpLh~A~~~~~~~iv~~Ll~~~g~~------------------~~~~n~~g~tpL~~A~~~~~~~i-----------v  148 (169)
T PHA02741         98 GDTALHLAAHRRDHDLAEWLCCQPGID------------------LHFCNADNKSPFELAIDNEDVAM-----------M  148 (169)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCC------------------CCcCCCCCCCHHHHHHHCCCHHH-----------H
Confidence            9999999999999999999997 4666                  88999999999999999999999           8


Q ss_pred             HHhhhc
Q 038344          136 KFFTTS  141 (383)
Q Consensus       136 ~~Ll~~  141 (383)
                      ++|++.
T Consensus       149 ~~L~~~  154 (169)
T PHA02741        149 QILREI  154 (169)
T ss_pred             HHHHHH
Confidence            888774

>PHA02795 ankyrin-like protein; Provisional

Probab=99.73  E-value=5.2e-17  Score=154.24  Aligned_cols=147  Identities=14%  Similarity=0.060  Sum_probs=122.4

Q ss_pred             HHHcCCHHHHHHHHhcCCcccc------cCCCCCCcHHHHHHH--cCC-----------ccccCCCCCcHHHHHHHcCCH
Q 038344           10 AALLGHEDFVNEILCQKPELAR------KSDSRKSSALHIASQ--KGK-----------CSATDVDGRNALHLAAMEGHI   70 (383)
Q Consensus        10 Aa~~g~~~~v~~Ll~~~~~~~~------~~d~~g~TpLh~Aa~--~g~-----------~~~~d~~G~tpLh~A~~~g~~   70 (383)
                      ||..+..|+++.|+.+|.++ +      .++..++|+||+++.  .|+           .+..-.++.||+|.|+.+|+.
T Consensus        84 ~~~~~~k~~~~~l~s~~~~~-~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~~~t~lh~A~~~~~~  162 (437)
T PHA02795         84 FAYITYKDIISALVSKNYME-DIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIECLNAYFRGICKKES  162 (437)
T ss_pred             HhhcchHHHHHHHHhccccc-chhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHcCcH
Confidence            36689999999999999997 4      578889999999999  454           222224678999999999999


Q ss_pred             HHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccc
Q 038344           71 DVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVN  150 (383)
Q Consensus        71 ~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n  150 (383)
                      +++++|+++|++...            ....+..+..|.|++|.|...++.++           +++|++. |+|+|.+|
T Consensus       163 eIVk~Lls~Ga~~~n------------~~~~~l~~~~~~t~l~~a~~~~~~eI-----------ve~LIs~-GADIN~kD  218 (437)
T PHA02795        163 SVVEFILNCGIPDEN------------DVKLDLYKIIQYTRGFLVDEPTVLEI-----------YKLCIPY-IEDINQLD  218 (437)
T ss_pred             HHHHHHHhcCCcccc------------cccchhhhhhccchhHHHHhcCHHHH-----------HHHHHhC-cCCcCcCC
Confidence            999999999975210            01122223568899999999999999           9999996 99999999


Q ss_pred             cCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          151 ANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       151 ~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      .+|.||||+|+.    .++.+++++|+++|++...
T Consensus       219 ~~G~TpLh~Aa~----~g~~eiVelLL~~GAdIN~  249 (437)
T PHA02795        219 AGGRTLLYRAIY----AGYIDLVSWLLENGANVNA  249 (437)
T ss_pred             CCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence            999999999999    8899999999999999854

>PHA02792 ankyrin-like protein; Provisional

Probab=99.72  E-value=5.3e-17  Score=159.70  Aligned_cols=76  Identities=12%  Similarity=0.128  Sum_probs=53.7

Q ss_pred             CcccccCCCCCC--CcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHH
Q 038344           97 GSELLNANDDNG--MTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGE  174 (383)
Q Consensus        97 ~~~~~n~~d~~g--~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~  174 (383)
                      .|+++|.+|.+|  .||||.|+.....+.        ...+++|++. |+|+|.+|..|.||||+|+.    .++.++++
T Consensus       361 ~GADIN~kD~~g~~~TpLh~A~~n~~~~v--------~~IlklLIs~-GADIN~kD~~G~TPLh~Aa~----~~n~eive  427 (631)
T PHA02792        361 NGNVVVEDDDNIINIMPLFPTLSIHESDV--------LSILKLCKPY-IDDINKIDKHGRSILYYCIE----SHSVSLVE  427 (631)
T ss_pred             cCCchhhhcCCCCChhHHHHHHHhccHhH--------HHHHHHHHhc-CCccccccccCcchHHHHHH----cCCHHHHH
Confidence            455666666654  477777665544332        0116777775 88888888888888888888    77788888


Q ss_pred             HHHHhcCCCCC
Q 038344          175 LLRRARGNSAK  185 (383)
Q Consensus       175 ~L~~~ga~~~~  185 (383)
                      +|+++|++.+.
T Consensus       428 lLLs~GADIN~  438 (631)
T PHA02792        428 WLIDNGADINI  438 (631)
T ss_pred             HHHHCCCCCCC
Confidence            88888888743

>PHA02917 ankyrin-like protein; Provisional

Probab=99.72  E-value=7.3e-17  Score=163.65  Aligned_cols=149  Identities=17%  Similarity=0.175  Sum_probs=121.2

Q ss_pred             ChHHHHHHHHHcCC--HHHHHHHHhcCCcccccCCCCCCcHHH--------HHHH-c-CCccccCCCCCcHHHHHHHcCC
Q 038344            2 TILQLAVAAALLGH--EDFVNEILCQKPELARKSDSRKSSALH--------IASQ-K-GKCSATDVDGRNALHLAAMEGH   69 (383)
Q Consensus         2 TpLh~A~~Aa~~g~--~~~v~~Ll~~~~~~~~~~d~~g~TpLh--------~Aa~-~-g~~~~~d~~G~tpLh~A~~~g~   69 (383)
                      |+||.+.+++..|.  .++++.|++.|+++ +.++.+|.|+..        .... . ++.+..+.+|+||||.|++.++
T Consensus       330 ~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdv-n~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~  408 (661)
T PHA02917        330 VLQHILIEYMTFGDIDIPLVECMLEYGAVV-NKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNY  408 (661)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHcCCCC-CCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcc
Confidence            46777777777776  56999999999999 788999999742        1111 2 2345567789999999986433


Q ss_pred             -----------------------HHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHH
Q 038344           70 -----------------------IDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWIT  126 (383)
Q Consensus        70 -----------------------~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~  126 (383)
                                             .++++.|+++|++                  +|.+|..|+||||+|+..++.++   
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAd------------------IN~kd~~G~TpLh~Aa~~~~~~~---  467 (661)
T PHA02917        409 GCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKD------------------INMIDKRGETLLHKAVRYNKQSL---  467 (661)
T ss_pred             cchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCC------------------CCCCCCCCcCHHHHHHHcCCHHH---
Confidence                                   4566777777776                  99999999999999999999999   


Q ss_pred             hhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          127 HITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       127 ~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                              +++|++. |+|+|.+|..|.||||+|+..   .++.+++++|+.+|++..
T Consensus       468 --------v~~Ll~~-GAdin~~d~~G~T~L~~A~~~---~~~~~iv~~LL~~ga~i~  513 (661)
T PHA02917        468 --------VSLLLES-GSDVNIRSNNGYTCIAIAINE---SRNIELLKMLLCHKPTLD  513 (661)
T ss_pred             --------HHHHHHC-cCCCCCCCCCCCCHHHHHHHh---CCCHHHHHHHHHcCCChh
Confidence                    9999996 999999999999999999841   356889999999998873

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.72  E-value=1.2e-17  Score=156.59  Aligned_cols=128  Identities=25%  Similarity=0.295  Sum_probs=118.1

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------------------------
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------------------------   49 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------------------------   49 (383)
                      .|+||-+|.   ..+.++|++|+++++++ +..|..||||||.|+..|+                               
T Consensus        74 lTalhq~~i---d~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~e  149 (527)
T KOG0505|consen   74 LTALHQACI---DDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDE  149 (527)
T ss_pred             chhHHHHHh---cccHHHHHHHHHhcCCc-cccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCc
Confidence            389999965   89999999999999999 8999999999999999998                               


Q ss_pred             -----------------------------------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHH
Q 038344           50 -----------------------------------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPL   88 (383)
Q Consensus        50 -----------------------------------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l   88 (383)
                                                               ....+..|-|.||.|+.+|..++.++|+++|.+      
T Consensus       150 a~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~------  223 (527)
T KOG0505|consen  150 ATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYS------  223 (527)
T ss_pred             chhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccC------
Confidence                                                     344556699999999999999999999999887      


Q ss_pred             HHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHh
Q 038344           89 KSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQ  162 (383)
Q Consensus        89 ~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~  162 (383)
                                  ++.+|.+|+||||.|+..|+.+.           +++|++. |++++..+..|.||++++..
T Consensus       224 ------------~~~~D~dgWtPlHAAA~Wg~~~~-----------~elL~~~-ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  224 ------------VNIKDYDGWTPLHAAAHWGQEDA-----------CELLVEH-GADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             ------------cccccccCCCcccHHHHhhhHhH-----------HHHHHHh-hcccchhhhcCCCCccchhh
Confidence                        89999999999999999999999           9988885 99999999999999999876

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.72  E-value=2.1e-17  Score=138.37  Aligned_cols=139  Identities=25%  Similarity=0.280  Sum_probs=117.9

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEG   68 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g   68 (383)
                      ||+.++++   ..+.+.+..+.+   +..|.+|+.|.|||.||+..|+             +....++..++|.+|++.|
T Consensus       131 s~~slsVh---ql~L~~~~~~~~---n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~gg  204 (296)
T KOG0502|consen  131 SPLSLSVH---QLHLDVVDLLVN---NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGG  204 (296)
T ss_pred             ChhhHHHH---HHHHHHHHHHhh---ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCC
Confidence            67778765   456666554443   3458899999999999999999             4455667789999999999


Q ss_pred             CHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccc
Q 038344           69 HIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNA  148 (383)
Q Consensus        69 ~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~  148 (383)
                      ..+||++|+..++|                  +|.-|.+|.|||-+|++.++.++           ++.|++. |+|++.
T Consensus       205 ytdiV~lLL~r~vd------------------VNvyDwNGgTpLlyAvrgnhvkc-----------ve~Ll~s-GAd~t~  254 (296)
T KOG0502|consen  205 YTDIVELLLTREVD------------------VNVYDWNGGTPLLYAVRGNHVKC-----------VESLLNS-GADVTQ  254 (296)
T ss_pred             hHHHHHHHHhcCCC------------------cceeccCCCceeeeeecCChHHH-----------HHHHHhc-CCCccc
Confidence            99999999999988                  99999999999999999999999           9999997 999999


Q ss_pred             cccCCCCHHHHHHhccCCcchhhHHHHHHHhcC
Q 038344          149 VNANGFTAWDILAQSKRDIKYWEIGELLRRARG  181 (383)
Q Consensus       149 ~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga  181 (383)
                      .+..|+++++.|..    .++. +++..++.-+
T Consensus       255 e~dsGy~~mdlAVa----lGyr-~Vqqvie~h~  282 (296)
T KOG0502|consen  255 EDDSGYWIMDLAVA----LGYR-IVQQVIEKHA  282 (296)
T ss_pred             ccccCCcHHHHHHH----hhhH-HHHHHHHHHH
Confidence            99999999999998    6666 6665555543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.71  E-value=3.1e-17  Score=137.27  Aligned_cols=112  Identities=14%  Similarity=0.181  Sum_probs=90.7

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcC------CcccccCCCCCCcHHHHHHHcCC----------------ccccC-CCC
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQK------PELARKSDSRKSSALHIASQKGK----------------CSATD-VDG   57 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~------~~~~~~~d~~g~TpLh~Aa~~g~----------------~~~~d-~~G   57 (383)
                      +||||+|+.   .|+..  +.+...+      +...+..|.+|+||||+|+..|+                ++.+| .+|
T Consensus        18 ~tpLh~A~~---~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g   92 (154)
T PHA02736         18 ENILHYLCR---NGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFG   92 (154)
T ss_pred             CCHHHHHHH---hCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCC
Confidence            599999965   88742  2222211      22335678999999999998886                56666 489


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHc-CCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHH
Q 038344           58 RNALHLAAMEGHIDVLEELVRA-KPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIK  136 (383)
Q Consensus        58 ~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~  136 (383)
                      .||||+|+..|+.+++++|+++ +.+                  +|.+|..|.||||+|+..|+.++           ++
T Consensus        93 ~T~Lh~A~~~~~~~i~~~Ll~~~g~d------------------~n~~~~~g~tpL~~A~~~~~~~i-----------~~  143 (154)
T PHA02736         93 NTPLHIAVYTQNYELATWLCNQPGVN------------------MEILNYAFKTPYYVACERHDAKM-----------MN  143 (154)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCC------------------CccccCCCCCHHHHHHHcCCHHH-----------HH
Confidence            9999999999999999999974 666                  89999999999999999999999           99


Q ss_pred             Hhhhccccccc
Q 038344          137 FFTTSTAIEVN  147 (383)
Q Consensus       137 ~Ll~~~g~d~~  147 (383)
                      +|++. |++.+
T Consensus       144 ~Ll~~-ga~~~  153 (154)
T PHA02736        144 ILRAK-GAQCK  153 (154)
T ss_pred             HHHHc-CCCCC
Confidence            99985 87764

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.70  E-value=5.8e-17  Score=130.86  Aligned_cols=111  Identities=26%  Similarity=0.312  Sum_probs=95.0

Q ss_pred             HHHHHHHcCC--------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCC
Q 038344           40 ALHIASQKGK--------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNAND  105 (383)
Q Consensus        40 pLh~Aa~~g~--------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d  105 (383)
                      -+-+|+..+.              +|.+|.+|+||||.|+.+|+.+|++.|+..|++                  .+.+.
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn------------------~~a~T  127 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN------------------KEAKT  127 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC------------------ccccc
Confidence            3567777776              789999999999999999999999999998888                  88999


Q ss_pred             CCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHH-hcCCC
Q 038344          106 DNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRR-ARGNS  183 (383)
Q Consensus       106 ~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~-~ga~~  183 (383)
                      ..|+||||.||..++.++           +.+|++. |+|+|+..+...||||+++.+.   +....+++|+. .+.++
T Consensus       128 ~~GWTPLhSAckWnN~~v-----------a~~LLqh-gaDVnA~t~g~ltpLhlaa~~r---n~r~t~~~Ll~dryi~p  191 (228)
T KOG0512|consen  128 NEGWTPLHSACKWNNFEV-----------AGRLLQH-GADVNAQTKGLLTPLHLAAGNR---NSRDTLELLLHDRYIHP  191 (228)
T ss_pred             ccCccchhhhhcccchhH-----------HHHHHhc-cCcccccccccchhhHHhhccc---chHHHHHHHhhccccCh
Confidence            999999999999999999           9999995 9999999999999999999842   34455666553 34344

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.68  E-value=3.5e-16  Score=118.15  Aligned_cols=89  Identities=31%  Similarity=0.551  Sum_probs=77.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 038344            4 LQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDA   83 (383)
Q Consensus         4 Lh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~   83 (383)
                      ||+|   ++.|+.++++.|++.++++                        +. |.||||+|+.+|+.+++++|+++|++ 
T Consensus         1 L~~A---~~~~~~~~~~~ll~~~~~~------------------------~~-~~~~l~~A~~~~~~~~~~~Ll~~g~~-   51 (89)
T PF12796_consen    1 LHIA---AQNGNLEILKFLLEKGADI------------------------NL-GNTALHYAAENGNLEIVKLLLENGAD-   51 (89)
T ss_dssp             HHHH---HHTTTHHHHHHHHHTTSTT------------------------TS-SSBHHHHHHHTTTHHHHHHHHHTTTC-
T ss_pred             CHHH---HHcCCHHHHHHHHHCcCCC------------------------CC-CCCHHHHHHHcCCHHHHHHHHHhccc-
Confidence            6888   4599999999999988766                        11 77899999999999999999999988 


Q ss_pred             CchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccc
Q 038344           84 ASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVN  150 (383)
Q Consensus        84 ~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n  150 (383)
                                       ++.+|.+|+||||+|+.+|+.++           +++|++. |++++.+|
T Consensus        52 -----------------~~~~~~~g~t~L~~A~~~~~~~~-----------~~~Ll~~-g~~~~~~n   89 (89)
T PF12796_consen   52 -----------------INSQDKNGNTALHYAAENGNLEI-----------VKLLLEH-GADVNIRN   89 (89)
T ss_dssp             -----------------TT-BSTTSSBHHHHHHHTTHHHH-----------HHHHHHT-TT-TTSS-
T ss_pred             -----------------ccccCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-CCCCCCcC
Confidence                             89999999999999999999999           9999996 99999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.68  E-value=5.5e-17  Score=141.05  Aligned_cols=102  Identities=29%  Similarity=0.337  Sum_probs=96.2

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhh
Q 038344           50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHIT  129 (383)
Q Consensus        50 ~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~  129 (383)
                      .|..|..|.+|||+||+.|+..+++.|+..|+.                  +|..+....||||+|+.+|+-++      
T Consensus        27 ln~gddhgfsplhwaakegh~aivemll~rgar------------------vn~tnmgddtplhlaaahghrdi------   82 (448)
T KOG0195|consen   27 LNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR------------------VNSTNMGDDTPLHLAAAHGHRDI------   82 (448)
T ss_pred             cccccccCcchhhhhhhcccHHHHHHHHhcccc------------------cccccCCCCcchhhhhhcccHHH------
Confidence            677889999999999999999999999999887                  89999999999999999999999      


Q ss_pred             chhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          130 YKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       130 ~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                           ++.|++. .+|+|+.|..|+||||+||.    .++..+.+-|+..||..+.
T Consensus        83 -----vqkll~~-kadvnavnehgntplhyacf----wgydqiaedli~~ga~v~i  128 (448)
T KOG0195|consen   83 -----VQKLLSR-KADVNAVNEHGNTPLHYACF----WGYDQIAEDLISCGAAVNI  128 (448)
T ss_pred             -----HHHHHHH-hcccchhhccCCCchhhhhh----hcHHHHHHHHHhccceeee
Confidence                 9999996 99999999999999999999    8999999999999998754

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.66  E-value=7.7e-16  Score=116.25  Aligned_cols=86  Identities=31%  Similarity=0.470  Sum_probs=78.6

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhh
Q 038344           61 LHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTT  140 (383)
Q Consensus        61 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~  140 (383)
                      ||+|++.|+.+++++|++.+++                  ++.    |+||||+|+..|+.++           +++|++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~------------------~~~----~~~~l~~A~~~~~~~~-----------~~~Ll~   47 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD------------------INL----GNTALHYAAENGNLEI-----------VKLLLE   47 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST------------------TTS----SSBHHHHHHHTTTHHH-----------HHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC------------------CCC----CCCHHHHHHHcCCHHH-----------HHHHHH
Confidence            7999999999999999998876                  443    9999999999999999           999999


Q ss_pred             cccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          141 STAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       141 ~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      . |++++.+|.+|+||||+|+.    .++.+++++|+++|++++
T Consensus        48 ~-g~~~~~~~~~g~t~L~~A~~----~~~~~~~~~Ll~~g~~~~   86 (89)
T PF12796_consen   48 N-GADINSQDKNGNTALHYAAE----NGNLEIVKLLLEHGADVN   86 (89)
T ss_dssp             T-TTCTT-BSTTSSBHHHHHHH----TTHHHHHHHHHHTTT-TT
T ss_pred             h-cccccccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence            6 99999999999999999999    899999999999999874

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.65  E-value=2.9e-16  Score=152.42  Aligned_cols=166  Identities=22%  Similarity=0.268  Sum_probs=136.0

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      .|.||.|   +.+|+.++++.|++..+-+ +..|..|.+|||+|+..|+             .+..+..|.||||.|+++
T Consensus        50 fTalhha---~Lng~~~is~llle~ea~l-dl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqh  125 (854)
T KOG0507|consen   50 FTLLHHA---VLNGQNQISKLLLDYEALL-DLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQH  125 (854)
T ss_pred             hhHHHHH---HhcCchHHHHHHhcchhhh-hhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhh
Confidence            4889999   5599999999999998877 7788999999999999999             677888999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCch------------------HHHHHhhcc-----CCcccccCCCCCCCcHHHHHHHcCChhHH
Q 038344           68 GHIDVLEELVRAKPDAASA------------------PLKSFLETR-----EGSELLNANDDNGMTILHLAVADKQIEIW  124 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~------------------~l~~l~~~~-----~~~~~~n~~d~~g~TpLh~A~~~~~~~~~  124 (383)
                      ||.+++.+|++++++....                  ++..++...     .....-..++-.+-+|||+|+++|+.++ 
T Consensus       126 gh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~-  204 (854)
T KOG0507|consen  126 GHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVEC-  204 (854)
T ss_pred             cchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHH-
Confidence            9999999999999886533                  233333210     0000123456778899999999999999 


Q ss_pred             HHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCCCC
Q 038344          125 ITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAKDM  187 (383)
Q Consensus       125 ~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~~l  187 (383)
                                ++.|++. |.|+|...++| |+||.|+.    .+..+++.+|++.|.+.....
T Consensus       205 ----------~~~ll~a-g~din~~t~~g-talheaal----cgk~evvr~ll~~gin~h~~n  251 (854)
T KOG0507|consen  205 ----------MQALLEA-GFDINYTTEDG-TALHEAAL----CGKAEVVRFLLEIGINTHIKN  251 (854)
T ss_pred             ----------HHHHHhc-CCCcccccccc-hhhhhHhh----cCcchhhhHHHhhcccccccc
Confidence                      9999995 99999987766 89999999    788899999999999875443

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.62  E-value=4.6e-16  Score=139.41  Aligned_cols=131  Identities=27%  Similarity=0.351  Sum_probs=108.0

Q ss_pred             CCHHHHHHHHhc----CCc----ccccCCCCCCcHHHHHHHcCC--------------ccccCCCCCcHHHHHHHc----
Q 038344           14 GHEDFVNEILCQ----KPE----LARKSDSRKSSALHIASQKGK--------------CSATDVDGRNALHLAAME----   67 (383)
Q Consensus        14 g~~~~v~~Ll~~----~~~----~~~~~d~~g~TpLh~Aa~~g~--------------~~~~d~~G~tpLh~A~~~----   67 (383)
                      .+.+.|+..+..    .+.    ++|..|.+|+|+|||++++++              ++.+|+-|+||+++|+..    
T Consensus       237 a~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~  316 (452)
T KOG0514|consen  237 SDPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQ  316 (452)
T ss_pred             CCHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcc
Confidence            346666655543    222    247789999999999999998              567888899999998753    


Q ss_pred             -CCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCC-CCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccc
Q 038344           68 -GHIDVLEELVRAKPDAASAPLKSFLETREGSELLNAND-DNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIE  145 (383)
Q Consensus        68 -g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d-~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d  145 (383)
                       .+.++|+.|.+.|.                   +|.+- ..|+|+|++|+.+|+.++           ++.||.. |+|
T Consensus       317 ~~d~~vV~~LF~mgn-------------------VNaKAsQ~gQTALMLAVSHGr~d~-----------vk~LLac-gAd  365 (452)
T KOG0514|consen  317 PADRTVVERLFKMGD-------------------VNAKASQHGQTALMLAVSHGRVDM-----------VKALLAC-GAD  365 (452)
T ss_pred             hhhHHHHHHHHhccC-------------------cchhhhhhcchhhhhhhhcCcHHH-----------HHHHHHc-cCC
Confidence             46678888877542                   66664 689999999999999999           9999995 999


Q ss_pred             ccccccCCCCHHHHHHhccCCcchhhHHHHHHHh
Q 038344          146 VNAVNANGFTAWDILAQSKRDIKYWEIGELLRRA  179 (383)
Q Consensus       146 ~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~  179 (383)
                      +|.+|.+|.|+|+.|+.    .|+.||+++|+..
T Consensus       366 VNiQDdDGSTALMCA~E----HGhkEivklLLA~  395 (452)
T KOG0514|consen  366 VNIQDDDGSTALMCAAE----HGHKEIVKLLLAV  395 (452)
T ss_pred             CccccCCccHHHhhhhh----hChHHHHHHHhcc
Confidence            99999999999999999    9999999999864

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.61  E-value=3.5e-15  Score=155.41  Aligned_cols=150  Identities=23%  Similarity=0.218  Sum_probs=110.6

Q ss_pred             HHHcCCHHHHHHHHhc--CCcccccCCCCCCcHHH-HHHHcCC-------ccc--cCCCCCcHHHHHHHcCCHHHH----
Q 038344           10 AALLGHEDFVNEILCQ--KPELARKSDSRKSSALH-IASQKGK-------CSA--TDVDGRNALHLAAMEGHIDVL----   73 (383)
Q Consensus        10 Aa~~g~~~~v~~Ll~~--~~~~~~~~d~~g~TpLh-~Aa~~g~-------~~~--~d~~G~tpLh~A~~~g~~~iv----   73 (383)
                      |+..|+.+.++.+++.  +.++ |..|..|+|||| .|+.+++       ...  .+..|.||||.|+.+ +.+.+    
T Consensus        24 A~~~g~~~~v~~lL~~~~~~~i-n~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~-~~~~v~~ll  101 (743)
T TIGR00870        24 AAERGDLASVYRDLEEPKKLNI-NCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLE-YVDAVEAIL  101 (743)
T ss_pred             HHHcCCHHHHHHHhccccccCC-CCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhc-cHHHHHHHH
Confidence            4679999999999998  6666 778999999999 6666666       222  378899999999973 23333    


Q ss_pred             HHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccc---
Q 038344           74 EELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVN---  150 (383)
Q Consensus        74 ~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n---  150 (383)
                      +.+.+.+++....  . +     ........+..|.||||+|+.+|+.++           +++|+++ |+|++.++   
T Consensus       102 ~~l~~~~~~~~~~--~-~-----~~~~~~~~~~~G~TpLhlAa~~~~~ei-----------VklLL~~-GAdv~~~~~~~  161 (743)
T TIGR00870       102 LHLLAAFRKSGPL--E-L-----ANDQYTSEFTPGITALHLAAHRQNYEI-----------VKLLLER-GASVPARACGD  161 (743)
T ss_pred             HHHhhcccccCch--h-h-----hccccccccCCCCcHHHHHHHhCCHHH-----------HHHHHhC-CCCCCcCcCCc
Confidence            3333333221000  0 0     000011234579999999999999999           9999996 99998753   


Q ss_pred             -----------cCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          151 -----------ANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       151 -----------~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                                 ..|.||||.|+.    .++.+++++|+++|++.+.
T Consensus       162 ~~~~~~~~~~~~~g~tpL~~Aa~----~~~~~iv~lLl~~gadin~  203 (743)
T TIGR00870       162 FFVKSQGVDSFYHGESPLNAAAC----LGSPSIVALLSEDPADILT  203 (743)
T ss_pred             hhhcCCCCCcccccccHHHHHHH----hCCHHHHHHHhcCCcchhh
Confidence                       358999999999    8899999999999988754

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.60  E-value=1.8e-15  Score=147.07  Aligned_cols=138  Identities=25%  Similarity=0.292  Sum_probs=125.0

Q ss_pred             HHHHHcCCHHHHHHHHhcC------------CcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHH
Q 038344            8 VAAALLGHEDFVNEILCQK------------PELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALH   62 (383)
Q Consensus         8 ~~Aa~~g~~~~v~~Ll~~~------------~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh   62 (383)
                      +.|+..|+.+.+..+|+..            ++-.+..|.+|.|+||.|+.+|+             +...|..|.+|||
T Consensus         8 ~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plh   87 (854)
T KOG0507|consen    8 IDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLH   87 (854)
T ss_pred             HHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEE
Confidence            4567799999999999862            22346778999999999999998             5678899999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcc
Q 038344           63 LAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTST  142 (383)
Q Consensus        63 ~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~  142 (383)
                      +|+.+|+.|++|.++.++..                  +|.++..|.||||+|+++|+.++           +.+|+.+ 
T Consensus        88 laaw~g~~e~vkmll~q~d~------------------~na~~~e~~tplhlaaqhgh~dv-----------v~~Ll~~-  137 (854)
T KOG0507|consen   88 LAAWNGNLEIVKMLLLQTDI------------------LNAVNIENETPLHLAAQHGHLEV-----------VFYLLKK-  137 (854)
T ss_pred             ehhhcCcchHHHHHHhcccC------------------CCcccccCcCccchhhhhcchHH-----------HHHHHhc-
Confidence            99999999999999998744                  89999999999999999999999           9999996 


Q ss_pred             cccccccccCCCCHHHHHHhccCCcchhhHHHHHHHh
Q 038344          143 AIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRA  179 (383)
Q Consensus       143 g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~  179 (383)
                      |+|.-.+|+.+.|++++|++    .+..++++.|++.
T Consensus       138 ~adp~i~nns~~t~ldlA~q----fgr~~Vvq~ll~~  170 (854)
T KOG0507|consen  138 NADPFIRNNSKETVLDLASR----FGRAEVVQMLLQK  170 (854)
T ss_pred             CCCccccCcccccHHHHHHH----hhhhHHHHHHhhh
Confidence            99999999999999999999    9999999999987

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.60  E-value=3.7e-15  Score=146.50  Aligned_cols=145  Identities=26%  Similarity=0.296  Sum_probs=125.0

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccC----CCCCCcHHHHHHHcCC----------------------ccccC-
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKS----DSRKSSALHIASQKGK----------------------CSATD-   54 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~----d~~g~TpLh~Aa~~g~----------------------~~~~d-   54 (383)
                      |.||.|.-....++.++++.|++..|+++|..    ...|.||||+|+.+.+                      ....| 
T Consensus       145 T~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dq  224 (782)
T KOG3676|consen  145 TLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQ  224 (782)
T ss_pred             hHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccc
Confidence            78999987777888899999999998876543    3569999999998877                      00111 


Q ss_pred             -------------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCCh
Q 038344           55 -------------VDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQI  121 (383)
Q Consensus        55 -------------~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~  121 (383)
                                   ..|..||-.||.-++.|++++|+++|+|                  +|.+|.+|||.||..+..-..
T Consensus       225 k~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd------------------~~aqDS~GNTVLH~lVi~~~~  286 (782)
T KOG3676|consen  225 KASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD------------------PNAQDSNGNTVLHMLVIHFVT  286 (782)
T ss_pred             cccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC------------------CCccccCCChHHHHHHHHHHH
Confidence                         2478999999999999999999999888                  999999999999999998888


Q ss_pred             hHHHHhhhchhhHHHHhhhccccc--ccccccCCCCHHHHHHhccCCcchhhHHHHHHHhc
Q 038344          122 EIWITHITYKSRAIKFFTTSTAIE--VNAVNANGFTAWDILAQSKRDIKYWEIGELLRRAR  180 (383)
Q Consensus       122 ~~~~~~l~~~~~~v~~Ll~~~g~d--~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~g  180 (383)
                      ++           ..++++. |++  ...+|++|.|||-+|++    .+..++.+.+++..
T Consensus       287 ~M-----------y~~~L~~-ga~~l~~v~N~qgLTPLtLAak----lGk~emf~~ile~~  331 (782)
T KOG3676|consen  287 EM-----------YDLALEL-GANALEHVRNNQGLTPLTLAAK----LGKKEMFQHILERR  331 (782)
T ss_pred             HH-----------HHHHHhc-CCCccccccccCCCChHHHHHH----hhhHHHHHHHHHhh
Confidence            88           8888885 888  88999999999999999    89999999998873

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.59  E-value=3.3e-14  Score=113.49  Aligned_cols=118  Identities=35%  Similarity=0.534  Sum_probs=98.2

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAK   80 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~   80 (383)
                      .||||.|+.   .|+.++++.|++.+++.                     +..|..|.||+|.|+..++.++++.|++.+
T Consensus         8 ~t~l~~a~~---~~~~~~i~~li~~~~~~---------------------~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~   63 (126)
T cd00204           8 RTPLHLAAS---NGHLEVVKLLLENGADV---------------------NAKDNDGRTPLHLAAKNGHLEIVKLLLEKG   63 (126)
T ss_pred             CCHHHHHHH---cCcHHHHHHHHHcCCCC---------------------CccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            367777743   67777777777777654                     245677889999999999999999999988


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHH
Q 038344           81 PDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDIL  160 (383)
Q Consensus        81 ~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A  160 (383)
                      ++                  ++..|..|.||+|+|+..++.++           +++|+++ +.+.+..|..|.||+++|
T Consensus        64 ~~------------------~~~~~~~~~~~l~~a~~~~~~~~-----------~~~L~~~-~~~~~~~~~~~~~~l~~~  113 (126)
T cd00204          64 AD------------------VNARDKDGNTPLHLAARNGNLDV-----------VKLLLKH-GADVNARDKDGRTPLHLA  113 (126)
T ss_pred             CC------------------ccccCCCCCCHHHHHHHcCcHHH-----------HHHHHHc-CCCCcccCCCCCCHHHHH
Confidence            76                  77888999999999999999999           9999986 888999999999999999


Q ss_pred             HhccCCcchhhHHHHH
Q 038344          161 AQSKRDIKYWEIGELL  176 (383)
Q Consensus       161 ~~~~~~~~~~~i~~~L  176 (383)
                      ..    .+..+++++|
T Consensus       114 ~~----~~~~~~~~~L  125 (126)
T cd00204         114 AK----NGHLEVVKLL  125 (126)
T ss_pred             Hh----cCCHHHHHHh
Confidence            98    5677777766

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.56  E-value=2.4e-14  Score=130.96  Aligned_cols=101  Identities=13%  Similarity=0.056  Sum_probs=88.3

Q ss_pred             cccCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCC----CCCCCcHHHHHHHcCChhHHH
Q 038344           51 SATDVDGRN-ALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNAN----DDNGMTILHLAVADKQIEIWI  125 (383)
Q Consensus        51 ~~~d~~G~t-pLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~----d~~g~TpLh~A~~~~~~~~~~  125 (383)
                      ..+|++|+| +||.|++.|+.+++++|+++|++                  +|.+    |..|.||||+|+..++.++  
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAd------------------iN~~~~~sd~~g~TpLh~Aa~~~~~ei--   85 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGAD------------------PEAPFPLSENSKTNPLIYAIDCDNDDA--   85 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCC------------------ccccCcccCCCCCCHHHHHHHcCCHHH--
Confidence            346777776 56677788999999999999988                  6766    4689999999999999999  


Q ss_pred             HhhhchhhHHHHhhhccccccccc-ccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          126 THITYKSRAIKFFTTSTAIEVNAV-NANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       126 ~~l~~~~~~v~~Ll~~~g~d~~~~-n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                               +++|++. |+|+|.. +..|.||||+|+.    .++.+++++|+++|+++..
T Consensus        86 ---------vklLL~~-GADVN~~~~~~g~TpLh~Aa~----~~~~eivklLL~~GAdin~  132 (300)
T PHA02884         86 ---------AKLLIRY-GADVNRYAEEAKITPLYISVL----HGCLKCLEILLSYGADINI  132 (300)
T ss_pred             ---------HHHHHHc-CCCcCcccCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence                     9999996 9999986 4689999999999    8889999999999999854

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.51  E-value=8.2e-14  Score=100.92  Aligned_cols=100  Identities=21%  Similarity=0.277  Sum_probs=87.4

Q ss_pred             HHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHH
Q 038344           11 ALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKS   90 (383)
Q Consensus        11 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~   90 (383)
                      .++|..|-|+.....|-++.+                      -..|++|||+|+..|+.+++++|+..|++        
T Consensus        10 vkNG~~DeVk~~v~~g~nVn~----------------------~~ggR~plhyAAD~GQl~ilefli~iGA~--------   59 (117)
T KOG4214|consen   10 VKNGEIDEVKQSVNEGLNVNE----------------------IYGGRTPLHYAADYGQLSILEFLISIGAN--------   59 (117)
T ss_pred             hccCcHHHHHHHHHccccHHH----------------------HhCCcccchHhhhcchHHHHHHHHHhccc--------
Confidence            568999999999988866622                      13689999999999999999999999888        


Q ss_pred             HhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHh
Q 038344           91 FLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQ  162 (383)
Q Consensus        91 l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~  162 (383)
                                ++.+|+.|-|||..|+..|+.++           |++|++. |+|....-.+|.+.+..+-.
T Consensus        60 ----------i~~kDKygITPLLsAvwEGH~~c-----------VklLL~~-GAdrt~~~PdG~~~~eate~  109 (117)
T KOG4214|consen   60 ----------IQDKDKYGITPLLSAVWEGHRDC-----------VKLLLQN-GADRTIHAPDGTALIEATEE  109 (117)
T ss_pred             ----------cCCccccCCcHHHHHHHHhhHHH-----------HHHHHHc-CcccceeCCCchhHHhhccH
Confidence                      89999999999999999999999           9999997 99999999999888765433

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.45  E-value=8e-13  Score=116.76  Aligned_cols=117  Identities=33%  Similarity=0.446  Sum_probs=103.3

Q ss_pred             ccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcCC-----HHHHHHHHHcCC--CCCchHHHH
Q 038344           31 RKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEGH-----IDVLEELVRAKP--DAASAPLKS   90 (383)
Q Consensus        31 ~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g~-----~~iv~~Ll~~~~--~~~~~~l~~   90 (383)
                      ...+..+.+++|.++..+.             ++.+|.+|.||||+|+.+|+     .++++.|++.|+  +        
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~--------  138 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLD--------  138 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCC--------
Confidence            4556667788888877776             56778888899999998888     999999999988  3        


Q ss_pred             HhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchh
Q 038344           91 FLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYW  170 (383)
Q Consensus        91 l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~  170 (383)
                               ..+.+|.+|+||||+|+..|+.++           +++|++. |++++..|..|.|+++.|+.    .+..
T Consensus       139 ---------~~~~~~~~g~tpl~~A~~~~~~~~-----------~~~ll~~-~~~~~~~~~~g~t~l~~a~~----~~~~  193 (235)
T COG0666         139 ---------VNNLRDEDGNTPLHWAALNGDADI-----------VELLLEA-GADPNSRNSYGVTALDPAAK----NGRI  193 (235)
T ss_pred             ---------CccccCCCCCchhHHHHHcCchHH-----------HHHHHhc-CCCCcccccCCCcchhhhcc----cchH
Confidence                     267789999999999999999999           9999996 99999999999999999999    8889


Q ss_pred             hHHHHHHHhc
Q 038344          171 EIGELLRRAR  180 (383)
Q Consensus       171 ~i~~~L~~~g  180 (383)
                      ++.+.+.+.+
T Consensus       194 ~~~~~l~~~~  203 (235)
T COG0666         194 ELVKLLLDKG  203 (235)
T ss_pred             HHHHHHHhcC
Confidence            9999999987

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.45  E-value=2.7e-13  Score=133.60  Aligned_cols=147  Identities=20%  Similarity=0.192  Sum_probs=115.5

Q ss_pred             HHcCCHHHHHHHHhcCC--------cccccCCCCCCcHHHHHHHcCC--------------------c-cccCCCCCcHH
Q 038344           11 ALLGHEDFVNEILCQKP--------ELARKSDSRKSSALHIASQKGK--------------------C-SATDVDGRNAL   61 (383)
Q Consensus        11 a~~g~~~~v~~Ll~~~~--------~~~~~~d~~g~TpLh~Aa~~g~--------------------~-~~~d~~G~tpL   61 (383)
                      ...+..+....+++.+.        ...+.+...|.|.||.|..+.+                    + ......|+|||
T Consensus       109 ~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaL  188 (782)
T KOG3676|consen  109 DSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSAL  188 (782)
T ss_pred             cccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchH
Confidence            34566666666666552        2236667889999999998655                    1 12234799999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCC--------------CCCCcHHHHHHHcCChhHHHHh
Q 038344           62 HLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNAND--------------DNGMTILHLAVADKQIEIWITH  127 (383)
Q Consensus        62 h~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d--------------~~g~TpLh~A~~~~~~~~~~~~  127 (383)
                      |+|+.+.+.++|++|++.|+|+...         ..|......|              ..|..||-+|+..++.++    
T Consensus       189 HiAIv~~~~~~V~lLl~~gADV~aR---------a~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~ei----  255 (782)
T KOG3676|consen  189 HIAIVNRDAELVRLLLAAGADVHAR---------ACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEI----  255 (782)
T ss_pred             HHHHHhccHHHHHHHHHcCCchhhH---------hhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHH----
Confidence            9999999999999999999996443         1222222222              347899999999999999    


Q ss_pred             hhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCC
Q 038344          128 ITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGN  182 (383)
Q Consensus       128 l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~  182 (383)
                             +++|+++ |+|+|++|.+|||.||..+.    ....++.++++++|++
T Consensus       256 -------vrlLl~~-gAd~~aqDS~GNTVLH~lVi----~~~~~My~~~L~~ga~  298 (782)
T KOG3676|consen  256 -------VRLLLAH-GADPNAQDSNGNTVLHMLVI----HFVTEMYDLALELGAN  298 (782)
T ss_pred             -------HHHHHhc-CCCCCccccCCChHHHHHHH----HHHHHHHHHHHhcCCC
Confidence                   9999995 99999999999999999988    6778899999999999

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.43  E-value=2.9e-13  Score=91.74  Aligned_cols=54  Identities=39%  Similarity=0.700  Sum_probs=45.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHH
Q 038344           57 GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIK  136 (383)
Q Consensus        57 G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~  136 (383)
                      |+||||.|++.|+.+++++|++++.+                  +|.+|.+|+||||+|+..|+.++           ++
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d------------------in~~d~~g~t~lh~A~~~g~~~~-----------~~   51 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD------------------INAQDEDGRTPLHYAAKNGNIDI-----------VK   51 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG------------------TT-B-TTS--HHHHHHHTT-HHH-----------HH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC------------------CCCCCCCCCCHHHHHHHccCHHH-----------HH
Confidence            78999999999999999999998877                  89999999999999999999999           88


Q ss_pred             Hhh
Q 038344          137 FFT  139 (383)
Q Consensus       137 ~Ll  139 (383)
                      +|+
T Consensus        52 ~Ll   54 (54)
T PF13637_consen   52 FLL   54 (54)
T ss_dssp             HHH
T ss_pred             HHC
Confidence            875

...

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.43  E-value=1.5e-12  Score=103.69  Aligned_cols=98  Identities=36%  Similarity=0.558  Sum_probs=89.9

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhch
Q 038344           52 ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYK  131 (383)
Q Consensus        52 ~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~  131 (383)
                      .+|.+|.||||.|+..|+.+++++|++.+++                  .+.+|..|.||+|.|+..++.++        
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~------------------~~~~~~~g~~~l~~a~~~~~~~~--------   55 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGAD------------------VNAKDNDGRTPLHLAAKNGHLEI--------   55 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCC------------------CCccCCCCCcHHHHHHHcCCHHH--------
Confidence            3578899999999999999999999999887                  58899999999999999999999        


Q ss_pred             hhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCC
Q 038344          132 SRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNS  183 (383)
Q Consensus       132 ~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~  183 (383)
                         +++|++. +.+++..|..|.||+|.|+.    .++.+++++|++.|.+.
T Consensus        56 ---~~~ll~~-~~~~~~~~~~~~~~l~~a~~----~~~~~~~~~L~~~~~~~   99 (126)
T cd00204          56 ---VKLLLEK-GADVNARDKDGNTPLHLAAR----NGNLDVVKLLLKHGADV   99 (126)
T ss_pred             ---HHHHHHc-CCCccccCCCCCCHHHHHHH----cCcHHHHHHHHHcCCCC
Confidence               9999996 88899999999999999999    78899999999998554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=8e-13  Score=123.72  Aligned_cols=124  Identities=27%  Similarity=0.314  Sum_probs=104.2

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKP   81 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~   81 (383)
                      .||-+.+.|+..|..|+|+.++..-.|.                     ...|.+|-|+||-|+..||.+||++|++.|+
T Consensus       549 nPLaLLLDaaLeGEldlVq~~i~ev~Dp---------------------SqpNdEGITaLHNAiCaghyeIVkFLi~~ga  607 (752)
T KOG0515|consen  549 NPLALLLDAALEGELDLVQRIIYEVTDP---------------------SQPNDEGITALHNAICAGHYEIVKFLIEFGA  607 (752)
T ss_pred             chHHHHHhhhhcchHHHHHHHHHhhcCC---------------------CCCCccchhHHhhhhhcchhHHHHHHHhcCC
Confidence            5888888999999999999998776555                     2456789999999999999999999999988


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccccc-ccCCCCHHHHH
Q 038344           82 DAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAV-NANGFTAWDIL  160 (383)
Q Consensus        82 ~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~-n~~G~TpL~~A  160 (383)
                      +                  +|..|.+|+||||+|+..++..+           ++.|++. |+.+-+. =.++.||.+-+
T Consensus       608 n------------------VNa~DSdGWTPLHCAASCNnv~~-----------ckqLVe~-GaavfAsTlSDmeTa~eKC  657 (752)
T KOG0515|consen  608 N------------------VNAADSDGWTPLHCAASCNNVPM-----------CKQLVES-GAAVFASTLSDMETAAEKC  657 (752)
T ss_pred             c------------------ccCccCCCCchhhhhhhcCchHH-----------HHHHHhc-cceEEeeecccccchhhhc
Confidence            8                  99999999999999999999999           9999996 7766544 45788998776


Q ss_pred             HhccCCcchhhHHHHHHH
Q 038344          161 AQSKRDIKYWEIGELLRR  178 (383)
Q Consensus       161 ~~~~~~~~~~~i~~~L~~  178 (383)
                      -.  .+.++..+.++|..
T Consensus       658 ee--~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  658 EE--MEEGYDQCSQYLYG  673 (752)
T ss_pred             ch--hhhhHHHHHHHHHH
Confidence            54  33577788888854

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.40  E-value=4.2e-13  Score=134.80  Aligned_cols=172  Identities=20%  Similarity=0.274  Sum_probs=127.4

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC--------------ccccCCCCCcHHHHHHHc
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~--------------~~~~d~~G~tpLh~A~~~   67 (383)
                      |+|-+||+   .||.|+++.|+.+|+++ ..+|..|.+||.+|+-.||              --..|+.+.|+|-+||..
T Consensus       759 t~LT~aca---ggh~e~vellv~rgani-ehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsg  834 (2131)
T KOG4369|consen  759 TNLTSACA---GGHREEVELLVVRGANI-EHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSG  834 (2131)
T ss_pred             cccccccc---CccHHHHHHHHHhcccc-cccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCC
Confidence            78888876   99999999999999998 8899999999999999999              124577788888888888


Q ss_pred             CCHHHHHHHHHcCCCCCch------------------HHHHHhhccCCcccccCCC--CCCCcHHHHHHHcCChhHHHHh
Q 038344           68 GHIDVLEELVRAKPDAASA------------------PLKSFLETREGSELLNAND--DNGMTILHLAVADKQIEIWITH  127 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~------------------~l~~l~~~~~~~~~~n~~d--~~g~TpLh~A~~~~~~~~~~~~  127 (383)
                      |+.++|++||.+|++..-.                  .++.++.   .|..+|.+.  +.|-.||++|..+|+....+-+
T Consensus       835 gr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS---~GseInSrtgSklgisPLmlatmngh~~at~~l  911 (2131)
T KOG4369|consen  835 GRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLS---SGSEINSRTGSKLGISPLMLATMNGHQAATLSL  911 (2131)
T ss_pred             CcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhh---cccccccccccccCcchhhhhhhccccHHHHHH
Confidence            8888888888887764322                  3344443   444444443  4455566666666555542222


Q ss_pred             hh-----------------------chhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          128 IT-----------------------YKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       128 l~-----------------------~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      +.                       .....+.+||.. .+++..+-+.|.|||.-++.    .++.|+-++|+.+|||.+
T Consensus       912 l~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~-~anvehRaktgltplme~As----gGyvdvg~~li~~gad~n  986 (2131)
T KOG4369|consen  912 LQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAA-QANVEHRAKTGLTPLMEMAS----GGYVDVGNLLIAAGADTN  986 (2131)
T ss_pred             hcccchhccccccccccceeeccccCcchHHHHHHHH-hhhhhhhcccCCcccchhhc----CCccccchhhhhcccccc
Confidence            21                       001127777775 88888888999999999999    889999999999999975


Q ss_pred             C
Q 038344          185 K  185 (383)
Q Consensus       185 ~  185 (383)
                      -
T Consensus       987 a  987 (2131)
T KOG4369|consen  987 A  987 (2131)
T ss_pred             c
Confidence            3

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.39  E-value=2.4e-13  Score=92.78  Aligned_cols=50  Identities=26%  Similarity=0.328  Sum_probs=32.6

Q ss_pred             ccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHH
Q 038344           99 ELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDIL  160 (383)
Q Consensus        99 ~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A  160 (383)
                      .++|.+|.+|+||||+|+.+|+.++           +++|++ .|+|++.+|++|+||+|+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~-----------v~~Ll~-~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEV-----------VRLLLQ-NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHH-----------HHHHHH-CT--TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHH-----------HHHHHH-CcCCCCCCcCCCCCHHHhC
Confidence            3589999999999999999999999           999996 5999999999999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.34  E-value=4.3e-12  Score=129.72  Aligned_cols=87  Identities=22%  Similarity=0.317  Sum_probs=83.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHh
Q 038344           59 NALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFF  138 (383)
Q Consensus        59 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~L  138 (383)
                      +.|+.|+..|+.+.++.|++.|++                  +|.+|.+|+||||+|+.+|+.++           +++|
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gad------------------in~~d~~G~TpLh~Aa~~g~~ei-----------v~~L  134 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGAD------------------PNCRDYDGRTPLHIACANGHVQV-----------VRVL  134 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC------------------CCCcCCCCCcHHHHHHHCCCHHH-----------HHHH
Confidence            468899999999999999999887                  89999999999999999999999           9999


Q ss_pred             hhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHh
Q 038344          139 TTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRA  179 (383)
Q Consensus       139 l~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~  179 (383)
                      ++. |+|+|.+|.+|.||||+|+.    .++.+++++|+++
T Consensus       135 L~~-Gadvn~~d~~G~TpLh~A~~----~g~~~iv~~Ll~~  170 (664)
T PTZ00322        135 LEF-GADPTLLDKDGKTPLELAEE----NGFREVVQLLSRH  170 (664)
T ss_pred             HHC-CCCCCCCCCCCCCHHHHHHH----CCcHHHHHHHHhC
Confidence            996 99999999999999999999    8899999999998

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.33  E-value=5.3e-12  Score=129.07  Aligned_cols=103  Identities=22%  Similarity=0.261  Sum_probs=88.7

Q ss_pred             HHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHH
Q 038344            9 AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPL   88 (383)
Q Consensus         9 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l   88 (383)
                      .|+..|+.+.++.|++.|+++                     +.+|.+|+||||+|+.+|+.+++++|+++|++      
T Consensus        88 ~aa~~G~~~~vk~LL~~Gadi---------------------n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad------  140 (664)
T PTZ00322         88 QLAASGDAVGARILLTGGADP---------------------NCRDYDGRTPLHIACANGHVQVVRVLLEFGAD------  140 (664)
T ss_pred             HHHHcCCHHHHHHHHHCCCCC---------------------CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC------
Confidence            346799999999999999876                     34567788999999999999999999999888      


Q ss_pred             HHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhc------ccccccccccCCCCHHHHHH
Q 038344           89 KSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTS------TAIEVNAVNANGFTAWDILA  161 (383)
Q Consensus        89 ~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~------~g~d~~~~n~~G~TpL~~A~  161 (383)
                                  +|.+|.+|+||||+|+..|+.++           +++|++.      .|++.+..+..|.+|+..+.
T Consensus       141 ------------vn~~d~~G~TpLh~A~~~g~~~i-----------v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        141 ------------PTLLDKDGKTPLELAEENGFREV-----------VQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             ------------CCCCCCCCCCHHHHHHHCCcHHH-----------HHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence                        89999999999999999999999           8888873      37788888888888776644

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.32  E-value=4.2e-12  Score=92.13  Aligned_cols=90  Identities=19%  Similarity=0.220  Sum_probs=81.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhh
Q 038344           60 ALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFT  139 (383)
Q Consensus        60 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll  139 (383)
                      -+.+++++|..+-||-....|-+                  +|..- .|++|||+|+..|+.++           +++|+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~n------------------Vn~~~-ggR~plhyAAD~GQl~i-----------lefli   54 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLN------------------VNEIY-GGRTPLHYAADYGQLSI-----------LEFLI   54 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHcccc------------------HHHHh-CCcccchHhhhcchHHH-----------HHHHH
Confidence            46788999999999998887755                  55443 89999999999999999           99999


Q ss_pred             hcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          140 TSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       140 ~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      .. |++++.+|+.|-|||--|..    .++.+++++|++.||++.
T Consensus        55 ~i-GA~i~~kDKygITPLLsAvw----EGH~~cVklLL~~GAdrt   94 (117)
T KOG4214|consen   55 SI-GANIQDKDKYGITPLLSAVW----EGHRDCVKLLLQNGADRT   94 (117)
T ss_pred             Hh-ccccCCccccCCcHHHHHHH----HhhHHHHHHHHHcCcccc
Confidence            96 99999999999999999999    899999999999999984

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.29  E-value=3.3e-12  Score=87.13  Aligned_cols=48  Identities=42%  Similarity=0.543  Sum_probs=32.0

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHH
Q 038344           50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA  115 (383)
Q Consensus        50 ~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A  115 (383)
                      ++.+|.+|+||||+|+.+|+.+++++|++.+.+                  ++.+|.+|+||||+|
T Consensus         9 ~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d------------------~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    9 VNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD------------------PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             TT---TTS--HHHHHHHHT-HHHHHHHHHCT--------------------TT---TTS--HHHH-
T ss_pred             CcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC------------------CCCCcCCCCCHHHhC
Confidence            467889999999999999999999999998887                  999999999999997

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.28  E-value=7.7e-12  Score=84.73  Aligned_cols=54  Identities=28%  Similarity=0.366  Sum_probs=45.6

Q ss_pred             CCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHH
Q 038344          108 GMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLR  177 (383)
Q Consensus       108 g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~  177 (383)
                      |+||||+|+..|+.++           +++|+++ |+|+|.+|.+|.||||+|+.    .++.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~-----------~~~Ll~~-~~din~~d~~g~t~lh~A~~----~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEI-----------VKLLLEH-GADINAQDEDGRTPLHYAAK----NGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHH-----------HHHHHHT-TSGTT-B-TTS--HHHHHHH----TT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHH-----------HHHHHHC-CCCCCCCCCCCCCHHHHHHH----ccCHHHHHHHC
Confidence            7899999999999999           9999997 99999999999999999999    88999999885

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.13  E-value=4.1e-10  Score=98.54  Aligned_cols=95  Identities=20%  Similarity=0.241  Sum_probs=83.0

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhh
Q 038344           50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHIT  129 (383)
Q Consensus        50 ~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~  129 (383)
                      .+.+|..|.+||..|+..|+.+++++|++.|+|.                 -..++..+.||||.|+..|+.++      
T Consensus        38 vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDv-----------------N~~qhg~~YTpLmFAALSGn~dv------   94 (396)
T KOG1710|consen   38 VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADV-----------------NDKQHGTLYTPLMFAALSGNQDV------   94 (396)
T ss_pred             hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCc-----------------CcccccccccHHHHHHHcCCchH------
Confidence            4678889999999999999999999999999983                 23467889999999999999999      


Q ss_pred             chhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHH
Q 038344          130 YKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLR  177 (383)
Q Consensus       130 ~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~  177 (383)
                           .++|++. |+.....|.-|+|+-.+|+.    .|+-+.+..+-
T Consensus        95 -----crlllda-Ga~~~~vNsvgrTAaqmAAF----VG~H~CV~iIN  132 (396)
T KOG1710|consen   95 -----CRLLLDA-GARMYLVNSVGRTAAQMAAF----VGHHECVAIIN  132 (396)
T ss_pred             -----HHHHHhc-cCccccccchhhhHHHHHHH----hcchHHHHHHh
Confidence                 9999996 99999999999999999998    66666665543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.12  E-value=4.4e-10  Score=99.10  Aligned_cols=102  Identities=32%  Similarity=0.379  Sum_probs=91.7

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCC-----hhHH
Q 038344           50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQ-----IEIW  124 (383)
Q Consensus        50 ~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~-----~~~~  124 (383)
                      ....+..+.+++|.++..+..+++++++..+.+                  ++.+|.+|.||||+|+..++     .++ 
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~~~g~t~l~~a~~~~~~~~~~~~~-  126 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGAD------------------VNAKDADGDTPLHLAALNGNPPEGNIEV-  126 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCC------------------cccccCCCCcHHHHHHhcCCcccchHHH-
Confidence            344566689999999999999999999998888                  79999999999999999999     899 


Q ss_pred             HHhhhchhhHHHHhhhcccc---cccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          125 ITHITYKSRAIKFFTTSTAI---EVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       125 ~~~l~~~~~~v~~Ll~~~g~---d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                                ++.|++. |+   +.+.+|..|+||||+|+.    .++.+++++|++.|++...
T Consensus       127 ----------~~~ll~~-g~~~~~~~~~~~~g~tpl~~A~~----~~~~~~~~~ll~~~~~~~~  175 (235)
T COG0666         127 ----------AKLLLEA-GADLDVNNLRDEDGNTPLHWAAL----NGDADIVELLLEAGADPNS  175 (235)
T ss_pred             ----------HHHHHHc-CCCCCCccccCCCCCchhHHHHH----cCchHHHHHHHhcCCCCcc
Confidence                      9999996 88   667779999999999999    7778999999999998754

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.07  E-value=2.9e-10  Score=106.80  Aligned_cols=88  Identities=26%  Similarity=0.403  Sum_probs=79.6

Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhc
Q 038344           62 HLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTS  141 (383)
Q Consensus        62 h~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~  141 (383)
                      .-|+..|..|+|+-.+..-.|                  +...+++|-|+||-|+..|+.+|           |++|++.
T Consensus       555 LDaaLeGEldlVq~~i~ev~D------------------pSqpNdEGITaLHNAiCaghyeI-----------VkFLi~~  605 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYEVTD------------------PSQPNDEGITALHNAICAGHYEI-----------VKFLIEF  605 (752)
T ss_pred             HhhhhcchHHHHHHHHHhhcC------------------CCCCCccchhHHhhhhhcchhHH-----------HHHHHhc
Confidence            347788999999888876555                  77888999999999999999999           9999996


Q ss_pred             ccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCC
Q 038344          142 TAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNS  183 (383)
Q Consensus       142 ~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~  183 (383)
                       |+++|..|.+|+||||.|+.    .++..+++.|.+.|+-.
T Consensus       606 -ganVNa~DSdGWTPLHCAAS----CNnv~~ckqLVe~Gaav  642 (752)
T KOG0515|consen  606 -GANVNAADSDGWTPLHCAAS----CNNVPMCKQLVESGAAV  642 (752)
T ss_pred             -CCcccCccCCCCchhhhhhh----cCchHHHHHHHhccceE
Confidence             99999999999999999999    78889999999999976

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.02  E-value=1.5e-10  Score=116.85  Aligned_cols=155  Identities=19%  Similarity=0.225  Sum_probs=123.5

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccC-CCCCCcHHHHHHHcCC------------------------------
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKS-DSRKSSALHIASQKGK------------------------------   49 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~-d~~g~TpLh~Aa~~g~------------------------------   49 (383)
                      +|||.+|   +..|..++++.|+..|.++.... .+.|-.||.+|..+||                              
T Consensus       858 ytPlsla---~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~  934 (2131)
T KOG4369|consen  858 YTPLSLA---RSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLAL  934 (2131)
T ss_pred             cCchhhh---cCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeecc
Confidence            4788777   45788888888888887773332 3457788888888887                              


Q ss_pred             -----------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCch--------------------HHHHHh
Q 038344           50 -----------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA--------------------PLKSFL   92 (383)
Q Consensus        50 -----------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~--------------------~l~~l~   92 (383)
                                       ...+-+.|.|||+-++..|.+|+=.+|+.+|+|.+..                    .+..++
T Consensus       935 fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~ll 1014 (2131)
T KOG4369|consen  935 FQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLL 1014 (2131)
T ss_pred             ccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhh
Confidence                             3446678999999999999999999999999987644                    333333


Q ss_pred             hccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhH
Q 038344           93 ETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEI  172 (383)
Q Consensus        93 ~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i  172 (383)
                         ...+-+..++++|+|+|.+|+..|+...           +..|+++ ++|++..|+.-.+++.-|.+    .++.+|
T Consensus      1015 ---n~~atv~v~NkkG~T~Lwla~~Gg~lss-----------~~il~~~-~ad~d~qdnr~~S~~maafR----Kgh~~i 1075 (2131)
T KOG4369|consen 1015 ---NGDATVRVPNKKGCTVLWLASAGGALSS-----------CPILVSS-VADADQQDNRTNSRTMAAFR----KGHFAI 1075 (2131)
T ss_pred             ---CCccceecccCCCCcccchhccCCcccc-----------chHHhhc-ccChhhhhcccccccHHHHH----hchhhe
Confidence               3556678899999999999999999999           9999996 99999999999999998888    666666


Q ss_pred             HHHHH
Q 038344          173 GELLR  177 (383)
Q Consensus       173 ~~~L~  177 (383)
                      ++++.
T Consensus      1076 Vk~mv 1080 (2131)
T KOG4369|consen 1076 VKKMV 1080 (2131)
T ss_pred             ecccc
Confidence            66654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.82  E-value=3.5e-09  Score=98.52  Aligned_cols=96  Identities=25%  Similarity=0.331  Sum_probs=88.3

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchh
Q 038344           53 TDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKS  132 (383)
Q Consensus        53 ~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~  132 (383)
                      ++.++..++.+|++.|.+..++-+.-.|.|                  ++.+|.+.+|+||.|+..|+.++         
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D------------------~~~~DyD~RTaLHvAAaEG~v~v---------  554 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMD------------------LETKDYDDRTALHVAAAEGHVEV---------  554 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhccc------------------ccccccccchhheeecccCceeH---------
Confidence            455677899999999999999988887777                  89999999999999999999999         


Q ss_pred             hHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcC
Q 038344          133 RAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARG  181 (383)
Q Consensus       133 ~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga  181 (383)
                        +++|++..++|++.+|..|+||||-|..    +++.+++++|.++--
T Consensus       555 --~kfl~~~~kv~~~~kDRw~rtPlDdA~~----F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  555 --VKFLLNACKVDPDPKDRWGRTPLDDAKH----FKHKEVVKLLEEAQY  597 (622)
T ss_pred             --HHHHHHHHcCCCChhhccCCCcchHhHh----cCcHHHHHHHHHHhc
Confidence              9999999999999999999999999999    999999999988644

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.80  E-value=2.7e-09  Score=105.28  Aligned_cols=83  Identities=24%  Similarity=0.365  Sum_probs=77.2

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCC-CCCCcHHHHHHHcCChhHHHHhh
Q 038344           50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNAND-DNGMTILHLAVADKQIEIWITHI  128 (383)
Q Consensus        50 ~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d-~~g~TpLh~A~~~~~~~~~~~~l  128 (383)
                      .+.+|..|+|+||+|+..|..+++++|+++|.|                  ++.+| +.|+||||-|..+|+.++     
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGid------------------v~vqD~ESG~taLHRaiyyG~idc-----  101 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGID------------------VFVQDEESGYTALHRAIYYGNIDC-----  101 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCce------------------eeeccccccchHhhHhhhhchHHH-----
Confidence            688999999999999999999999999999988                  78888 469999999999999999     


Q ss_pred             hchhhHHHHhhhcccccccccccCCCCHHHHHHh
Q 038344          129 TYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQ  162 (383)
Q Consensus       129 ~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~  162 (383)
                            +-.||.+ |+.+.++|++|..||+..++
T Consensus       102 ------a~lLL~~-g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  102 ------ASLLLSK-GRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             ------HHHHHhc-CCceEEecccCCCHHHHHhh
Confidence                  8888885 99999999999999999876

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.77  E-value=2.5e-08  Score=87.55  Aligned_cols=95  Identities=17%  Similarity=0.186  Sum_probs=84.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHH
Q 038344           57 GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIK  136 (383)
Q Consensus        57 G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~  136 (383)
                      -..||.-+.-.|..+-...|++.--+                  +|.+|..|.|||..|+.+|+.+.           ++
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~------------------vn~~D~sGMs~LahAaykGnl~~-----------v~   62 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQ------------------VNQRDPSGMSVLAHAAYKGNLTL-----------VE   62 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhh------------------hhccCCCcccHHHHHHhcCcHHH-----------HH
Confidence            45788899999999999999885333                  89999999999999999999999           99


Q ss_pred             Hhhhccccccccc-ccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          137 FFTTSTAIEVNAV-NANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       137 ~Ll~~~g~d~~~~-n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      +|++. |+|+|.. +..+.||||.|+.    .|+.++.++|+++|+.+..
T Consensus        63 lll~~-gaDvN~~qhg~~YTpLmFAAL----SGn~dvcrllldaGa~~~~  107 (396)
T KOG1710|consen   63 LLLEL-GADVNDKQHGTLYTPLMFAAL----SGNQDVCRLLLDAGARMYL  107 (396)
T ss_pred             HHHHh-CCCcCcccccccccHHHHHHH----cCCchHHHHHHhccCcccc
Confidence            99995 9999964 5678999999999    8899999999999999843

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.73  E-value=3.3e-08  Score=93.88  Aligned_cols=98  Identities=20%  Similarity=0.297  Sum_probs=87.1

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhh
Q 038344           50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHIT  129 (383)
Q Consensus        50 ~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~  129 (383)
                      +..++.+..+.||+|+..|+-|+|+++++++|.                .+++..|+.|.|+||-|+..++-.+      
T Consensus       892 ll~~~~~~~sllh~a~~tg~~eivkyildh~p~----------------elld~~de~get~lhkaa~~~~r~v------  949 (1004)
T KOG0782|consen  892 LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS----------------ELLDMADETGETALHKAACQRNRAV------  949 (1004)
T ss_pred             eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH----------------HHHHHHhhhhhHHHHHHHHhcchHH------
Confidence            445778889999999999999999999999986                2478889999999999999999999      


Q ss_pred             chhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHh
Q 038344          130 YKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRA  179 (383)
Q Consensus       130 ~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~  179 (383)
                           +++|++. |+.+...|..|.||-.-|.+    .++.++..+|...
T Consensus       950 -----c~~lvda-gasl~ktd~kg~tp~eraqq----a~d~dlaayle~r  989 (1004)
T KOG0782|consen  950 -----CQLLVDA-GASLRKTDSKGKTPQERAQQ----AGDPDLAAYLESR  989 (1004)
T ss_pred             -----HHHHHhc-chhheecccCCCChHHHHHh----cCCchHHHHHhhh
Confidence                 9999996 99999999999999999988    7888888887643

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.70  E-value=6.4e-08  Score=90.65  Aligned_cols=96  Identities=24%  Similarity=0.251  Sum_probs=81.3

Q ss_pred             ccccCCCCCcH------HHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCC-CCCCcHHHHHHHcCChh
Q 038344           50 CSATDVDGRNA------LHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNAND-DNGMTILHLAVADKQIE  122 (383)
Q Consensus        50 ~~~~d~~G~tp------Lh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d-~~g~TpLh~A~~~~~~~  122 (383)
                      ...+|.+|.+.      ||..++.|+.|..--|+..|++                  .|..+ +.|+||||.|++.|+..
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~------------------~N~~hpekg~TpLHvAAk~Gq~~  181 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQ------------------ANFFHPEKGNTPLHVAAKAGQIL  181 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccc------------------cCCCCcccCCchhHHHHhccchh
Confidence            44678888764      8999999999999899998888                  56655 57999999999999999


Q ss_pred             HHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHh
Q 038344          123 IWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRA  179 (383)
Q Consensus       123 ~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~  179 (383)
                      -           +++|+- +|+|++..|.+|.||+++|-.    .++-++.+.|.+.
T Consensus       182 Q-----------~ElL~v-YGAD~~a~d~~GmtP~~~AR~----~gH~~laeRl~e~  222 (669)
T KOG0818|consen  182 Q-----------AELLAV-YGADPGAQDSSGMTPVDYARQ----GGHHELAERLVEI  222 (669)
T ss_pred             h-----------hhHHhh-ccCCCCCCCCCCCcHHHHHHh----cCchHHHHHHHHH
Confidence            8           898888 599999999999999999988    6666676666553

>PF13606 Ank_3: Ankyrin repeat

Probab=98.65  E-value=3.9e-08  Score=57.37  Aligned_cols=27  Identities=37%  Similarity=0.684  Sum_probs=25.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 038344           56 DGRNALHLAAMEGHIDVLEELVRAKPD   82 (383)
Q Consensus        56 ~G~tpLh~A~~~g~~~iv~~Ll~~~~~   82 (383)
                      +|+||||+||++|+.|++++|+++|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            599999999999999999999999988

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.60  E-value=7.2e-08  Score=57.82  Aligned_cols=27  Identities=41%  Similarity=0.694  Sum_probs=25.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 038344           56 DGRNALHLAAMEGHIDVLEELVRAKPD   82 (383)
Q Consensus        56 ~G~tpLh~A~~~g~~~iv~~Ll~~~~~   82 (383)
                      +|+||||+|++.|+.+++++|+++|++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~   27 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGAD   27 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCC
Confidence            699999999999999999999999988

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.57  E-value=5.9e-08  Score=56.61  Aligned_cols=30  Identities=47%  Similarity=0.699  Sum_probs=27.8

Q ss_pred             CCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccc
Q 038344          107 NGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNA  148 (383)
Q Consensus       107 ~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~  148 (383)
                      +|+||||+|++.|+.++           +++|++. |+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~-----------v~~Ll~~-gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEI-----------VKYLLEH-GADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHH-----------HHHHHHc-CCCCCC
Confidence            59999999999999999           9999996 999874

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.57  E-value=6.6e-08  Score=57.96  Aligned_cols=33  Identities=27%  Similarity=0.437  Sum_probs=30.7

Q ss_pred             CCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccccccc
Q 038344          107 NGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNA  151 (383)
Q Consensus       107 ~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~  151 (383)
                      +|+||||+|+..|+.++           +++|++. |++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~-----------v~~Ll~~-ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDI-----------VKLLLKH-GADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHH-----------HHHHHHT-TSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHH-----------HHHHHHC-cCCCCCCCC
Confidence            59999999999999999           9999996 999999874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.48  E-value=3.6e-07  Score=87.28  Aligned_cols=94  Identities=18%  Similarity=0.105  Sum_probs=74.1

Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhc
Q 038344           62 HLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTS  141 (383)
Q Consensus        62 h~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~  141 (383)
                      ..|+....+..+-+|+.+|..              ...+-..-+.+|+|+||+|++.|+..+           .++|+. 
T Consensus       629 l~A~~~~Dl~t~~lLLAhg~~--------------~e~~~t~~~~~grt~LHLa~~~gnVvl-----------~QLLiW-  682 (749)
T KOG0705|consen  629 LRAVAAEDLQTAILLLAHGSR--------------EEVNETCGEGDGRTALHLAARKGNVVL-----------AQLLIW-  682 (749)
T ss_pred             HHHHHHHHHHHHHHHHhccCc--------------hhhhccccCCCCcchhhhhhhhcchhH-----------HHHHHH-
Confidence            345555555556666666543              111223346788999999999999999           999998 


Q ss_pred             ccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          142 TAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       142 ~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      +|+|+..+|..|+|+|.||-+    .+..|+++.|+++|.....
T Consensus       683 yg~dv~~rda~g~t~l~yar~----a~sqec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  683 YGVDVMARDAHGRTALFYARQ----AGSQECIDVLLQYGCPDEC  722 (749)
T ss_pred             hCccceecccCCchhhhhHhh----cccHHHHHHHHHcCCCccc
Confidence            599999999999999999999    8899999999999998743

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.37  E-value=2.1e-07  Score=86.92  Aligned_cols=79  Identities=30%  Similarity=0.375  Sum_probs=70.0

Q ss_pred             CCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCccc
Q 038344           34 DSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSEL  100 (383)
Q Consensus        34 d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~  100 (383)
                      +.++..++.+|++.|+             ++.+|.+.+|+||+|+..|+++++|+|++.+..                 +
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv-----------------~  565 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKV-----------------D  565 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcC-----------------C
Confidence            4456678999999998             678999999999999999999999999997543                 4


Q ss_pred             ccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhh
Q 038344          101 LNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTT  140 (383)
Q Consensus       101 ~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~  140 (383)
                      ++.+|..|+|||.-|...++.++           +++|-+
T Consensus       566 ~~~kDRw~rtPlDdA~~F~h~~v-----------~k~L~~  594 (622)
T KOG0506|consen  566 PDPKDRWGRTPLDDAKHFKHKEV-----------VKLLEE  594 (622)
T ss_pred             CChhhccCCCcchHhHhcCcHHH-----------HHHHHH
Confidence            88999999999999999999999           887654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.34  E-value=1e-06  Score=83.78  Aligned_cols=87  Identities=25%  Similarity=0.285  Sum_probs=68.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHh
Q 038344           59 NALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFF  138 (383)
Q Consensus        59 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~L  138 (383)
                      -|+|.++.....+-....+....                ...++.+|..|+||||+|+..|+.+.           ++.|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~----------------~~~id~~D~~g~TpLhlAV~Lg~~~~-----------a~~L   74 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKV----------------SLVIDRRDPPGRTPLHLAVRLGHVEA-----------ARIL   74 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhh----------------hceeccccCCCCccHHHHHHhcCHHH-----------HHHH
Confidence            45888887776665544433221                12388999999999999999999999           9999


Q ss_pred             hhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHH
Q 038344          139 TTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLR  177 (383)
Q Consensus       139 l~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~  177 (383)
                      +.. |+|+..+|++|++|||.|+.    .++.+++..++
T Consensus        75 l~a-~Adv~~kN~~gWs~L~EAv~----~g~~q~i~~vl  108 (560)
T KOG0522|consen   75 LSA-GADVSIKNNEGWSPLHEAVS----TGNEQIITEVL  108 (560)
T ss_pred             Hhc-CCCccccccccccHHHHHHH----cCCHHHHHHHH
Confidence            996 99999999999999999998    66665554444

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.31  E-value=1e-06  Score=83.66  Aligned_cols=61  Identities=30%  Similarity=0.434  Sum_probs=54.6

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhh
Q 038344           50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHI  128 (383)
Q Consensus        50 ~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l  128 (383)
                      +..+|..|+||||+|+.-|+.+.++.|+.+|++                  +..+|++|++|||-|+..|+.+++..++
T Consensus        48 id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad------------------v~~kN~~gWs~L~EAv~~g~~q~i~~vl  108 (560)
T KOG0522|consen   48 IDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD------------------VSIKNNEGWSPLHEAVSTGNEQIITEVL  108 (560)
T ss_pred             eccccCCCCccHHHHHHhcCHHHHHHHHhcCCC------------------ccccccccccHHHHHHHcCCHHHHHHHH
Confidence            556788999999999999999999999999988                  7889999999999999999998854444

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.31  E-value=2.7e-06  Score=80.03  Aligned_cols=82  Identities=23%  Similarity=0.199  Sum_probs=66.6

Q ss_pred             HHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHH
Q 038344           11 ALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKS   90 (383)
Q Consensus        11 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~   90 (383)
                      ++.|+.+..-.||..|++. |..+                   -..|.||||.|++.|+..-+++|.-+|+|        
T Consensus       141 vRt~nlet~LRll~lGA~~-N~~h-------------------pekg~TpLHvAAk~Gq~~Q~ElL~vYGAD--------  192 (669)
T KOG0818|consen  141 VRTGNLETCLRLLSLGAQA-NFFH-------------------PEKGNTPLHVAAKAGQILQAELLAVYGAD--------  192 (669)
T ss_pred             hhcccHHHHHHHHHccccc-CCCC-------------------cccCCchhHHHHhccchhhhhHHhhccCC--------
Confidence            4477777777777777776 3222                   23689999999999999999999998888        


Q ss_pred             HhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhc
Q 038344           91 FLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITY  130 (383)
Q Consensus        91 l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~  130 (383)
                                ++.+|.+|.||+.+|-..|+-++.++++..
T Consensus       193 ----------~~a~d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  193 ----------PGAQDSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             ----------CCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence                      899999999999999999999986666553

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.30  E-value=4.3e-07  Score=90.19  Aligned_cols=85  Identities=27%  Similarity=0.260  Sum_probs=71.8

Q ss_pred             HHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 038344           19 VNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVD-GRNALHLAAMEGHIDVLEELVRAKPDAA   84 (383)
Q Consensus        19 v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~-G~tpLh~A~~~g~~~iv~~Ll~~~~~~~   84 (383)
                      --++-+.+.+.++..|..|+|+||+|++.+.             ++.+|.+ |+||||.|+.+|++|++-.|+++|..  
T Consensus        34 k~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S--  111 (1267)
T KOG0783|consen   34 KGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS--  111 (1267)
T ss_pred             HHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc--
Confidence            3344455777889999999999999998887             5667764 99999999999999999999999876  


Q ss_pred             chHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCCh
Q 038344           85 SAPLKSFLETREGSELLNANDDNGMTILHLAVADKQI  121 (383)
Q Consensus        85 ~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~  121 (383)
                                      +..+|++|..||..-++-...
T Consensus       112 ----------------L~i~Dkeglsplq~~~r~~~~  132 (1267)
T KOG0783|consen  112 ----------------LRIKDKEGLSPLQFLSRVLSS  132 (1267)
T ss_pred             ----------------eEEecccCCCHHHHHhhcccc
Confidence                            889999999999998874433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.18  E-value=2.5e-06  Score=87.63  Aligned_cols=78  Identities=29%  Similarity=0.358  Sum_probs=73.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhH
Q 038344           55 VDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRA  134 (383)
Q Consensus        55 ~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~  134 (383)
                      ..|.|+||.|+..|...++++|+++|++                  +|..|..|+||+|.+...|+...           
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~------------------vn~~d~~g~~plh~~~~~g~~~~-----------  704 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD------------------VNALDSKGRTPLHHATASGHTSI-----------  704 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc------------------chhhhccCCCcchhhhhhcccch-----------
Confidence            4679999999999999999999999887                  99999999999999999999999           


Q ss_pred             HHHhhhcccccccccccCCCCHHHHHHh
Q 038344          135 IKFFTTSTAIEVNAVNANGFTAWDILAQ  162 (383)
Q Consensus       135 v~~Ll~~~g~d~~~~n~~G~TpL~~A~~  162 (383)
                      +..|+++ |++.++.|.+|.+|+++|..
T Consensus       705 ~~~ll~~-~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  705 ACLLLKR-GADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             hhhhccc-cccccccCccCcchhhHHhh
Confidence            8888885 99999999999999999987

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.10  E-value=7.5e-06  Score=83.93  Aligned_cols=107  Identities=21%  Similarity=0.245  Sum_probs=87.5

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhc-CCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQ-KPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAM   66 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~   66 (383)
                      ||-||++   +..++..+++.+++. +... ...|.+|.-.+|+++..|.             ++.+|..|+||||+|+.
T Consensus       575 ~lllhL~---a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~  650 (975)
T KOG0520|consen  575 MLLLHLL---AELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAF  650 (975)
T ss_pred             hHHHHHH---HHHhHHHHHHHHhcccccCc-hhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhh
Confidence            5778998   558999999999997 5444 6678888899999777665             78899999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhH
Q 038344           67 EGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI  123 (383)
Q Consensus        67 ~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~  123 (383)
                      +|+..++..|++-|++.+            .-.++...+..|.|+--+|-.+|+..+
T Consensus       651 ~G~e~l~a~l~~lga~~~------------~~tdps~~~p~g~ta~~la~s~g~~gi  695 (975)
T KOG0520|consen  651 RGREKLVASLIELGADPG------------AVTDPSPETPGGKTAADLARANGHKGI  695 (975)
T ss_pred             cCHHHHHHHHHHhccccc------------cccCCCCCCCCCCchhhhhhcccccch
Confidence            999999999998887732            111244555679999999999999888

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.06  E-value=1.4e-05  Score=76.74  Aligned_cols=64  Identities=31%  Similarity=0.360  Sum_probs=57.9

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhch
Q 038344           52 ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYK  131 (383)
Q Consensus        52 ~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~  131 (383)
                      ..+.+|+|+||+||+.|++.+.++|+-+|.|                  +-.+|.+|+|+|.||-+.|..++        
T Consensus       656 ~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d------------------v~~rda~g~t~l~yar~a~sqec--------  709 (749)
T KOG0705|consen  656 CGEGDGRTALHLAARKGNVVLAQLLIWYGVD------------------VMARDAHGRTALFYARQAGSQEC--------  709 (749)
T ss_pred             ccCCCCcchhhhhhhhcchhHHHHHHHhCcc------------------ceecccCCchhhhhHhhcccHHH--------
Confidence            3467899999999999999999999998888                  78999999999999999999999        


Q ss_pred             hhHHHHhhhccccc
Q 038344          132 SRAIKFFTTSTAIE  145 (383)
Q Consensus       132 ~~~v~~Ll~~~g~d  145 (383)
                         +..|+.. |..
T Consensus       710 ---~d~llq~-gcp  719 (749)
T KOG0705|consen  710 ---IDVLLQY-GCP  719 (749)
T ss_pred             ---HHHHHHc-CCC
Confidence               9999985 653

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.03  E-value=8.5e-06  Score=77.92  Aligned_cols=103  Identities=24%  Similarity=0.242  Sum_probs=86.1

Q ss_pred             HHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC---------------ccccCCCCCcHHHHHHHcCCHHHH
Q 038344            9 AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK---------------CSATDVDGRNALHLAAMEGHIDVL   73 (383)
Q Consensus         9 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~---------------~~~~d~~G~tpLh~A~~~g~~~iv   73 (383)
                      +|+..++.--+++.-..|.++ -.++.+.+|.||+|+..|+               ++..|..|.|+||-|+..++-.+.
T Consensus       872 ~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc  950 (1004)
T KOG0782|consen  872 RAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVC  950 (1004)
T ss_pred             HHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHH
Confidence            345567766677777777777 5668888888888888887               567788999999999999999999


Q ss_pred             HHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhc
Q 038344           74 EELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTS  141 (383)
Q Consensus        74 ~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~  141 (383)
                      .+|++.|+.                  +...|..|.||-.-|-+.|+.+.           ..||-.+
T Consensus       951 ~~lvdagas------------------l~ktd~kg~tp~eraqqa~d~dl-----------aayle~r  989 (1004)
T KOG0782|consen  951 QLLVDAGAS------------------LRKTDSKGKTPQERAQQAGDPDL-----------AAYLESR  989 (1004)
T ss_pred             HHHHhcchh------------------heecccCCCChHHHHHhcCCchH-----------HHHHhhh
Confidence            999999887                  77899999999999999999999           7777543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.83  E-value=4.6e-05  Score=63.41  Aligned_cols=72  Identities=15%  Similarity=0.109  Sum_probs=64.4

Q ss_pred             ccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccc-ccccccccCCCCHHHHHHhccCCcchhhHHHHHH
Q 038344           99 ELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTA-IEVNAVNANGFTAWDILAQSKRDIKYWEIGELLR  177 (383)
Q Consensus        99 ~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g-~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~  177 (383)
                      .++|.+|..|+|+++.|+..|+.+.           +.+|+.+ | +++...|..|.+++.+|-+    .+..+++..|.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~ea-----------vsyllgr-g~a~vgv~d~ssldaaqlaek----~g~~~fvh~lf   66 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEA-----------VSYLLGR-GVAFVGVTDESSLDAAQLAEK----GGAQAFVHSLF   66 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhH-----------HHHHhcc-CcccccccccccchHHHHHHh----cChHHHHHHHH
Confidence            3589999999999999999999999           9999997 7 8999999999999999999    88899999999


Q ss_pred             HhcCCCCCC
Q 038344          178 RARGNSAKD  186 (383)
Q Consensus       178 ~~ga~~~~~  186 (383)
                      +.-.+...+
T Consensus        67 e~~~ets~p   75 (223)
T KOG2384|consen   67 ENDRETSHP   75 (223)
T ss_pred             HHhccCCCc
Confidence            886555433

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.79  E-value=8.1e-05  Score=75.03  Aligned_cols=119  Identities=20%  Similarity=0.198  Sum_probs=91.0

Q ss_pred             HHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHH
Q 038344            9 AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPL   88 (383)
Q Consensus         9 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l   88 (383)
                      .|+..|+.-.|+..++.....  ..+               +|..|.-|+++||+|+.+.+.|+.++|+++..+      
T Consensus        31 ~a~E~gd~~~V~k~l~~~~~~--~ln---------------inc~d~lGr~al~iai~nenle~~eLLl~~~~~------   87 (822)
T KOG3609|consen   31 LAHENGDVPLVAKALEYKAVS--KLN---------------INCRDPLGRLALHIAIDNENLELQELLLDTSSE------   87 (822)
T ss_pred             HHHHcCChHHHHHHHHhcccc--ccc---------------hhccChHhhhceecccccccHHHHHHHhcCccc------
Confidence            346688888888888775541  111               467888899999999999999999999986433      


Q ss_pred             HHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccc----------cccccCCCCHHH
Q 038344           89 KSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEV----------NAVNANGFTAWD  158 (383)
Q Consensus        89 ~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~----------~~~n~~G~TpL~  158 (383)
                                    .     ..+|-+|+..|..+.           ++.++.. ..+.          ...-..+-||+.
T Consensus        88 --------------~-----gdALL~aI~~~~v~~-----------VE~ll~~-~~~~~~~~~~~d~~~~~ft~ditPli  136 (822)
T KOG3609|consen   88 --------------E-----GDALLLAIAVGSVPL-----------VELLLVH-FVDAPYLERSGDANSPHFTPDITPLM  136 (822)
T ss_pred             --------------c-----chHHHHHHHHHHHHH-----------HHHHHhc-ccccchhccccccCcccCCCCccHHH
Confidence                          1     458899999999999           7777664 2111          122345789999


Q ss_pred             HHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          159 ILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       159 ~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      +|+.    .++.||+++|+.+|+...+
T Consensus       137 LAAh----~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen  137 LAAH----LNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHH----hcchHHHHHHHHcCCCCCC
Confidence            9999    8999999999999998754

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.66  E-value=0.00018  Score=66.04  Aligned_cols=68  Identities=21%  Similarity=0.176  Sum_probs=57.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHH
Q 038344           58 RNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKF  137 (383)
Q Consensus        58 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~  137 (383)
                      .--|..||+.|..+.++.|++.|.+                  +|.+|+..+.||.+|+..|+.++           +++
T Consensus        37 f~elceacR~GD~d~v~~LVetgvn------------------VN~vD~fD~spL~lAsLcGHe~v-----------vkl   87 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVN------------------VNAVDRFDSSPLYLASLCGHEDV-----------VKL   87 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCC------------------cchhhcccccHHHHHHHcCcHHH-----------HHH
Confidence            4458999999999999999998877                  99999999999999999999999           999


Q ss_pred             hhhcccccccccccCCCC
Q 038344          138 FTTSTAIEVNAVNANGFT  155 (383)
Q Consensus       138 Ll~~~g~d~~~~n~~G~T  155 (383)
                      |+++ |+-...-.-+|..
T Consensus        88 LLen-GAiC~rdtf~G~R  104 (516)
T KOG0511|consen   88 LLEN-GAICSRDTFDGDR  104 (516)
T ss_pred             HHHc-CCcccccccCcch
Confidence            9997 7754433344543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.51  E-value=9e-05  Score=76.29  Aligned_cols=29  Identities=21%  Similarity=0.099  Sum_probs=23.5

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 038344           51 SATDVDGRNALHLAAMEGHIDVLEELVRA   79 (383)
Q Consensus        51 ~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~   79 (383)
                      ....-.|++-+|+++..++.-.++.+++-
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~  596 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEW  596 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcc
Confidence            34456789999999999998888888874

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.49  E-value=0.00025  Score=59.15  Aligned_cols=66  Identities=23%  Similarity=0.290  Sum_probs=58.0

Q ss_pred             CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHh
Q 038344           48 GKCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITH  127 (383)
Q Consensus        48 g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~  127 (383)
                      ++++.+|..|+||+++|+..|+.+.+.+|+.+|..                 .+...|..|++++.+|-+.|..+.    
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a-----------------~vgv~d~ssldaaqlaek~g~~~f----   61 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVA-----------------FVGVTDESSLDAAQLAEKGGAQAF----   61 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcc-----------------cccccccccchHHHHHHhcChHHH----
Confidence            33688999999999999999999999999999832                 278899999999999999999999    


Q ss_pred             hhchhhHHHHhhhc
Q 038344          128 ITYKSRAIKFFTTS  141 (383)
Q Consensus       128 l~~~~~~v~~Ll~~  141 (383)
                             ++.|.+.
T Consensus        62 -------vh~lfe~   68 (223)
T KOG2384|consen   62 -------VHSLFEN   68 (223)
T ss_pred             -------HHHHHHH
Confidence                   7777765

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.36  E-value=0.0002  Score=73.90  Aligned_cols=71  Identities=32%  Similarity=0.438  Sum_probs=60.2

Q ss_pred             CCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccc
Q 038344           35 SRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELL  101 (383)
Q Consensus        35 ~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~  101 (383)
                      ..|.|+||.|+..|.             ++..|..|+||+|.+...|+...+..++++|++                  .
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~------------------~  715 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD------------------P  715 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccccc------------------c
Confidence            346677777776665             577888999999999999999999999998887                  8


Q ss_pred             cCCCCCCCcHHHHHHHcCChhH
Q 038344          102 NANDDNGMTILHLAVADKQIEI  123 (383)
Q Consensus       102 n~~d~~g~TpLh~A~~~~~~~~  123 (383)
                      +..|.+|.+||++|....+.++
T Consensus       716 ~a~~~~~~~~l~~a~~~~~~d~  737 (785)
T KOG0521|consen  716 NAFDPDGKLPLDIAMEAANADI  737 (785)
T ss_pred             cccCccCcchhhHHhhhccccH
Confidence            8999999999999988766665

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.26  E-value=0.00091  Score=61.52  Aligned_cols=60  Identities=23%  Similarity=0.215  Sum_probs=50.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 038344            4 LQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDA   83 (383)
Q Consensus         4 Lh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~   83 (383)
                      .--.|+|++.|+.|.|++|++.|.++                     |..|+...+||.+|+..||.+++|+|+++|+-|
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV---------------------N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC   95 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV---------------------NAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC   95 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc---------------------chhhcccccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            44557778899999999999988776                     456777888999999999999999999999865


Q ss_pred             C
Q 038344           84 A   84 (383)
Q Consensus        84 ~   84 (383)
                      .
T Consensus        96 ~   96 (516)
T KOG0511|consen   96 S   96 (516)
T ss_pred             c
Confidence            3

>smart00248 ANK ankyrin repeats

Probab=96.67  E-value=0.0035  Score=34.76  Aligned_cols=27  Identities=44%  Similarity=0.746  Sum_probs=24.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 038344           56 DGRNALHLAAMEGHIDVLEELVRAKPD   82 (383)
Q Consensus        56 ~G~tpLh~A~~~g~~~iv~~Ll~~~~~   82 (383)
                      +|.||+|+|+..|+.++++.|++.+.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            478999999999999999999998775

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.09  E-value=0.0084  Score=33.08  Aligned_cols=29  Identities=31%  Similarity=0.612  Sum_probs=24.8

Q ss_pred             CCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccc
Q 038344          107 NGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVN  147 (383)
Q Consensus       107 ~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~  147 (383)
                      +|.||+|+|+..++.++           ++.|++. +.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~-----------~~~ll~~-~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEV-----------VKLLLDK-GADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHH-----------HHHHHHc-CCCCC
Confidence            47899999999999999           9999985 66553

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.98  E-value=0.0083  Score=57.31  Aligned_cols=49  Identities=27%  Similarity=0.365  Sum_probs=43.4

Q ss_pred             cCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHh
Q 038344          102 NANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQ  162 (383)
Q Consensus       102 n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~  162 (383)
                      ...|..-.|+||+|+..|.-++           +.+||+. |+|+..+|..|.||.+++..
T Consensus       424 e~~~~ltsT~LH~aa~qg~~k~-----------v~~~Lee-g~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  424 EANDYLTSTFLHYAAAQGARKC-----------VKYFLEE-GCDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             cccccccchHHHHHHhcchHHH-----------HHHHHHh-cCCchhcccCCCCccccccc
Confidence            3455567899999999999999           9999997 89999999999999998764

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.56  E-value=0.016  Score=58.99  Aligned_cols=97  Identities=24%  Similarity=0.202  Sum_probs=68.1

Q ss_pred             ccCCCCCCcHHHHHHHcCCccc------cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCC
Q 038344           31 RKSDSRKSSALHIASQKGKCSA------TDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNAN  104 (383)
Q Consensus        31 ~~~d~~g~TpLh~Aa~~g~~~~------~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~  104 (383)
                      |..|.-|+++||.|..+.+...      .+.+-..+|.+|+..|..++|+.++.+-......-        ...+.-...
T Consensus        56 nc~d~lGr~al~iai~nenle~~eLLl~~~~~~gdALL~aI~~~~v~~VE~ll~~~~~~~~~~--------~~~d~~~~~  127 (822)
T KOG3609|consen   56 NCRDPLGRLALHIAIDNENLELQELLLDTSSEEGDALLLAIAVGSVPLVELLLVHFVDAPYLE--------RSGDANSPH  127 (822)
T ss_pred             hccChHhhhceecccccccHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHhcccccchhc--------cccccCccc
Confidence            7889999999999999888211      11222568899999999999999998754321100        000011122


Q ss_pred             CCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccc
Q 038344          105 DDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVN  147 (383)
Q Consensus       105 d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~  147 (383)
                      -..+-||+.+||..++.|+           ++.|+.+ |+++.
T Consensus       128 ft~ditPliLAAh~NnyEi-----------l~~Ll~k-g~~i~  158 (822)
T KOG3609|consen  128 FTPDITPLMLAAHLNNFEI-----------LQCLLTR-GHCIP  158 (822)
T ss_pred             CCCCccHHHHHHHhcchHH-----------HHHHHHc-CCCCC
Confidence            3567899999999999999           8988886 76654

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.78  E-value=0.044  Score=52.58  Aligned_cols=47  Identities=26%  Similarity=0.274  Sum_probs=41.7

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHH
Q 038344           52 ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV  116 (383)
Q Consensus        52 ~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~  116 (383)
                      ..+.--.|+||+|+.+|.-++|.+||+.|.|                  +..+|..|.||..++.
T Consensus       425 ~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D------------------p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  425 ANDYLTSTFLHYAAAQGARKCVKYFLEEGCD------------------PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             ccccccchHHHHHHhcchHHHHHHHHHhcCC------------------chhcccCCCCcccccc
Confidence            3444567999999999999999999999877                  7889999999999987

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.82  E-value=0.27  Score=42.59  Aligned_cols=97  Identities=15%  Similarity=0.168  Sum_probs=63.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHc--CChhHHHHhhhchhhH
Q 038344           57 GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVAD--KQIEIWITHITYKSRA  134 (383)
Q Consensus        57 G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~--~~~~~~~~~l~~~~~~  134 (383)
                      -.+++-+|..++..+++.+|+++-.-.             .+.....  ..+.--+.++...  .+..+           
T Consensus       179 A~~Am~~si~~~K~dva~~lls~f~ft-------------~~dv~~~--~~~~ydieY~LS~h~a~~kv-----------  232 (284)
T PF06128_consen  179 AHQAMWLSIGNAKEDVALYLLSKFNFT-------------KQDVASM--EKELYDIEYLLSEHSASYKV-----------  232 (284)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhccee-------------cchhhhc--CcchhhHHHHHhhcCCcHHH-----------
Confidence            357788888888888888888753210             0000111  1122223333322  24455           


Q ss_pred             HHHhhhcccccccc---cccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCC
Q 038344          135 IKFFTTSTAIEVNA---VNANGFTAWDILAQSKRDIKYWEIGELLRRARGNS  183 (383)
Q Consensus       135 v~~Ll~~~g~d~~~---~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~  183 (383)
                      +++.+++.-+++|.   +-+.|.|.|+-|.+    .++.|++.+|+++||-.
T Consensus       233 L~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~K----y~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  233 LEYFINRGLVDVNKKFQKVNSGDTMLDNAMK----YKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             HHHHHhccccccchhhhccCCcchHHHhHHh----cCcHHHHHHHHHcCccc
Confidence            78888875577774   35789999999999    89999999999999965

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=84.93  E-value=1.7  Score=31.08  Aligned_cols=50  Identities=14%  Similarity=0.307  Sum_probs=40.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHh
Q 038344           59 NALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFF  138 (383)
Q Consensus        59 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~L  138 (383)
                      .-+..|+..|+.|+++.+++.+..                         ....+..|+..-+.++           +++|
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~-------------------------~~~~l~~AI~~H~n~i-----------~~~l   51 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP-------------------------DNDCLEYAIKSHNNEI-----------ADWL   51 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc-------------------------HHHHHHHHHHHhhHHH-----------HHHH
Confidence            457899999999999999975311                         1557999999999999           9999


Q ss_pred             hhcccc
Q 038344          139 TTSTAI  144 (383)
Q Consensus       139 l~~~g~  144 (383)
                      +++...
T Consensus        52 ~~~y~~   57 (76)
T PF11929_consen   52 IENYNL   57 (76)
T ss_pred             HHhcCC
Confidence            987433

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	383
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-06
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-06
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-06
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-05
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-05
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		8e-05
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-05
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-04
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-04
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-04
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		3e-04
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		3e-04
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-04
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-04
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-04

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 61/125 (48%), Gaps = 27/125 (21%)
Query: 50  CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSF----LETREGS----ELL 101
            +A D DG   LHLAA EGH++++E L++A  D  +     +    L  REG     E+L
Sbjct: 40  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 99
Query: 102 -------NANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGF 154
                  NA D +G T LHLA  +  +E  I  +  K+ A          +VNA +  G 
Sbjct: 100 LKAGADVNAKDKDGYTPLHLAAREGHLE--IVEVLLKAGA----------DVNAQDKFGK 147
Query: 155 TAWDI 159
           TA+DI
Sbjct: 148 TAFDI 152

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 31/145 (21%)
Query: 50  CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSF----LETREGS----ELL 101
            +A D DG   LHLAA EGH++++E L++A  D  +     +    L  REG     E+L
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 102 -------NANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGF 154
                  NA D +G T LHLA  +  +E  I  +  K+ A          +VNA +  G 
Sbjct: 88  LKAGADVNAKDKDGYTPLHLAAREGHLE--IVEVLLKAGA----------DVNAQDKFGK 135
Query: 155 TAWDILAQSKRDIKYWEIGELLRRA 179
           T +D+  +      + +I E+L++A
Sbjct: 136 TPFDLAIRE----GHEDIAEVLQKA 156

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 34/130 (26%)
Query: 50  CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGM 109
            +A D DG   LHLAA EGH++++E L++A  D                  +NA D +G 
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD------------------VNAKDKDGY 69
Query: 110 TILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKY 169
           T LHLA  +  +E  I  +  K+ A          +VNA + +G+T   + A+      +
Sbjct: 70  TPLHLAAREGHLE--IVEVLLKAGA----------DVNAKDKDGYTPLHLAARE----GH 113
Query: 170 WEIGELLRRA 179
            EI E+L +A
Sbjct: 114 LEIVEVLLKA 123

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 45/172 (26%)
Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVD 56
           AA  G +D V  ++    ++   +D    + LH+A+  G+              +A+D  
Sbjct: 13  AAAAGQDDEVRILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSA 71
Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
           G   LHLAA +GH++++E L++   D                  +NA D  G T LHLA 
Sbjct: 72  GITPLHLAAYDGHLEIVEVLLKHGAD------------------VNAYDRAGWTPLHLAA 113
Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI-LAQSKRDI 167
              Q+E  I  +  K  A          +VNA +A G TA+DI + Q + D+
Sbjct: 114 LSGQLE--IVEVLLKHGA----------DVNAQDALGLTAFDISINQGQEDL 153

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 32/127 (25%)
Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATDVD 56
           AA  GH + V  +L    ++  K D    + LH+A++ G               +A D +
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN 67
Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
           GR  LHLAA  GH++V++ L+ A  D                  +NA D NG T LHLA 
Sbjct: 68  GRTPLHLAARNGHLEVVKLLLEAGAD------------------VNAKDKNGRTPLHLAA 109
Query: 117 ADKQIEI 123
            +  +E+
Sbjct: 110 RNGHLEV 116

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 43/138 (31%)
Query: 39  SALHIASQKG-------------KCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAAS 85
           + LH+A++ G               +A D +GR  LHLAA  GH++V++ L+ A  D   
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--- 60
Query: 86  APLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIE 145
                          +NA D NG T LHLA  +  +E+           +K    + A +
Sbjct: 61  ---------------VNAKDKNGRTPLHLAARNGHLEV-----------VKLLLEAGA-D 93
Query: 146 VNAVNANGFTAWDILAQS 163
           VNA + NG T   + A++
Sbjct: 94  VNAKDKNGRTPLHLAARN 111

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 48/187 (25%)
Query: 8   VAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATD 54
           + AA  G++D V +++    ++   SDS   + LH A+++G               +A D
Sbjct: 9   IEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 55  VDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHL 114
            DGR  LH AA EGH ++++ L+    D                  +NA D +G T LH 
Sbjct: 68  SDGRTPLHYAAKEGHKEIVKLLISKGAD------------------VNAKDSDGRTPLHY 109
Query: 115 AVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGE 174
           A  +   EI           +K   +  A +VN  +++G T  D+     R+    EI +
Sbjct: 110 AAKEGHKEI-----------VKLLISKGA-DVNTSDSDGRTPLDLA----REHGNEEIVK 153
Query: 175 LLRRARG 181
           LL +  G
Sbjct: 154 LLEKQGG 160

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 29/126 (23%)
Query: 50  CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDA------ASAPLK-----SFLETRE-- 96
            +A DV G   LHLAA  GH++++E L++   D        S PL        LE  E  
Sbjct: 40  VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVL 99
Query: 97  ---GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANG 153
              G++ +NA DDNG+T LHLA     +EI    + Y +            +VNA +  G
Sbjct: 100 LKNGAD-VNAKDDNGITPLHLAANRGHLEIVEVLLKYGA------------DVNAQDKFG 146
Query: 154 FTAWDI 159
            TA+DI
Sbjct: 147 KTAFDI 152

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 48/187 (25%)
Query: 8   VAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATD 54
           + AA  G++D V ++L    ++   SDS   + LH+A++ G               +A D
Sbjct: 9   IEAAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 55  VDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHL 114
            DG+  LHLAA  GH +V++ L+    D                   NA D +G T LHL
Sbjct: 68  SDGKTPLHLAAENGHKEVVKLLLSQGADP------------------NAKDSDGKTPLHL 109
Query: 115 AVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGE 174
           A  +   E+           +K   +  A + N  +++G T  D+     R+    E+ +
Sbjct: 110 AAENGHKEV-----------VKLLLSQGA-DPNTSDSDGRTPLDLA----REHGNEEVVK 153
Query: 175 LLRRARG 181
           LL +  G
Sbjct: 154 LLEKQGG 160

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 31/98 (31%)
Query: 39  SALHIASQKG-------------KCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAAS 85
           + LH+A++ G               +A D +GR  LHLAA  GH++V++ L+ A  D   
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--- 60
Query: 86  APLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI 123
                          +NA D NG T LHLA  +  +E+
Sbjct: 61  ---------------VNAKDKNGRTPLHLAARNGHLEV 83

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 44/163 (26%)
Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATDVD 56
           AA  G +D V  ++    ++   +D+  ++ LH+A+  G                A+DV 
Sbjct: 21  AARAGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF 79
Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
           G   LHLAA  GH++++E L++   D                  +NA D +GMT LHLA 
Sbjct: 80  GYTPLHLAAYWGHLEIVEVLLKNGAD------------------VNAMDSDGMTPLHLAA 121
Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI 159
               +E  I  +  K  A          +VNA +  G TA+DI
Sbjct: 122 KWGYLE--IVEVLLKHGA----------DVNAQDKFGKTAFDI 152

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 29/126 (23%)
Query: 50  CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAAS-----------APLKSFLETRE-- 96
            +A D  G+  LHLAA++GH++++E L++   D  +           A L   LE  E  
Sbjct: 40  VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 97  ---GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANG 153
              G++ +NA D  G T LHLA     +EI    + Y +            +VNA +  G
Sbjct: 100 LKNGAD-VNATDTYGFTPLHLAADAGHLEIVEVLLKYGA------------DVNAQDKFG 146
Query: 154 FTAWDI 159
            TA+DI
Sbjct: 147 KTAFDI 152

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 29/126 (23%)
Query: 50  CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDA------ASAPL-----KSFLETRE-- 96
            +ATD  G   LHLAA  GH++++E L++   D        + PL        LE  E  
Sbjct: 40  VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVL 99
Query: 97  ---GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANG 153
              G++ +NA D  G T LHLA  D  +EI    + Y +            +VNA +  G
Sbjct: 100 LKHGAD-VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA------------DVNAQDKFG 146
Query: 154 FTAWDI 159
            TA+DI
Sbjct: 147 KTAFDI 152

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 44/163 (26%)
Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATDVD 56
           AA  G +D V  ++    ++    D+   + LH+A++ G               +A D  
Sbjct: 21  AARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFS 79
Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
           G   LHLAA  GH++++E L++   D                  +NA+D  G T LHLA 
Sbjct: 80  GSTPLHLAAKRGHLEIVEVLLKYGAD------------------VNADDTIGSTPLHLAA 121
Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI 159
               +EI    + Y +            +VNA +  G TA+DI
Sbjct: 122 DTGHLEIVEVLLKYGA------------DVNAQDKFGKTAFDI 152

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 29/126 (23%)
Query: 50  CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSF-----------LETRE-- 96
            +ATD DG   LHLAA  GH++++E L++   D  ++ L              LE  E  
Sbjct: 40  VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVL 99
Query: 97  ---GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANG 153
              G+++ NA D++G T LHLA     +E  I  +  K  A          +VNA +  G
Sbjct: 100 LKHGADV-NAYDNDGHTPLHLAAKYGHLE--IVEVLLKHGA----------DVNAQDKFG 146
Query: 154 FTAWDI 159
            TA+DI
Sbjct: 147 KTAFDI 152

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 29/125 (23%)
Query: 51  SATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSF-----------LETRE--- 96
           +A D  G   LHLAA+ GH++++E L++   D  +A +  F           LE  E   
Sbjct: 41  NAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLL 100
Query: 97  --GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGF 154
             G++ +NA D  G T LHLA  +  +EI    + Y +            +VNA +  G 
Sbjct: 101 KYGAD-VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA------------DVNAQDKFGK 147
Query: 155 TAWDI 159
           TA+DI
Sbjct: 148 TAFDI 152

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 44/163 (26%)
Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVD 56
           AA  G +D V  ++    ++    D + S+ LH+A+  G               +A D D
Sbjct: 21  AARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD 79
Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
           G   LHLAA  GH++++E L++   D                  +NA D  G+T LHLA 
Sbjct: 80  GWTPLHLAADNGHLEIVEVLLKYGAD------------------VNAQDAYGLTPLHLAA 121
Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI 159
               +E  I  +  K  A          +VNA +  G TA+DI
Sbjct: 122 DRGHLE--IVEVLLKHGA----------DVNAQDKFGKTAFDI 152

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	383
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-05
2etb_A	256	Transient receptor potential cation channel subfam	4e-11
2etb_A	256	Transient receptor potential cation channel subfam	2e-08
2etb_A	256	Transient receptor potential cation channel subfam	4e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-06
2pnn_A	273	Transient receptor potential cation channel subfa	8e-10
2pnn_A	273	Transient receptor potential cation channel subfa	4e-06
2pnn_A	273	Transient receptor potential cation channel subfa	6e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-09
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-04
2rfa_A	232	Transient receptor potential cation channel subfa	3e-08
2rfa_A	232	Transient receptor potential cation channel subfa	4e-08
2rfa_A	232	Transient receptor potential cation channel subfa	3e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-05

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 68.0 bits (167), Expect = 2e-13
 Identities = 27/157 (17%), Positives = 47/157 (29%), Gaps = 38/157 (24%)

Query: 8   VAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------CSATDVDGRN 59
             A         +E+  ++ ++         +     + KG+         +       N
Sbjct: 17  FRALYTFEPRTPDELYIEEGDIIYI-TDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDN 75

Query: 60  ALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADK 119
            LH AA  G++  L E +  +                    +N  D  G T L+ A    
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVG------------------VNGLDKAGSTALYWACHGG 117

Query: 120 QIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
             +I           ++   T   IE+N  N  G TA
Sbjct: 118 HKDI-----------VEMLFTQPNIELNQQNKLGDTA 143

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 24/161 (14%), Positives = 43/161 (26%), Gaps = 45/161 (27%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS--------------ATDV 55
           AA  G+  ++ E L  +  +    D   S+AL+ A   G                   + 
Sbjct: 80  AAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK 138

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
            G  ALH AA +G+ D+++ L+                        +  +        +A
Sbjct: 139 LGDTALHAAAWKGYADIVQLLLAKGAR------------------TDLRNIEKKLAFDMA 180

Query: 116 VADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
                  +                  T       NA  +  
Sbjct: 181 TNAACASLLKKKQ------------GTDAVRTLSNAEDYLD 209

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 28/160 (17%), Positives = 44/160 (27%), Gaps = 48/160 (30%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDVD 56
               G    +      +            + LH A+++G  S               D  
Sbjct: 52  GTSKGRTGLIPSNYVAE------QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKA 105

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
           G  AL+ A   GH D++E L   +P+                  LN  +  G T LH A 
Sbjct: 106 GSTALYWACHGGHKDIVEMLF-TQPNIE----------------LNQQNKLGDTALHAAA 148

Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
                +I           ++      A   +  N     A
Sbjct: 149 WKGYADI-----------VQLLLAKGA-RTDLRNIEKKLA 176

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 15/119 (12%), Positives = 32/119 (26%), Gaps = 31/119 (26%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKC-------------SATDVD 56
           A   GH+D V  +  Q      + +    +ALH A+ KG                  +++
Sbjct: 113 ACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE 172

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
            + A  +A       +L++                            ++         +
Sbjct: 173 KKLAFDMATNAACASLLKKKQGTDAV------------------RTLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 26/113 (23%)

Query: 56  DGRNALHLAAMEGHIDVLEELVR------AKPDAASAPLKSFLETREGSELL------NA 103
            G+  +  A         +EL           D +      +  T +G   L        
Sbjct: 11  PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNW--WKGTSKGRTGLIPSNYVAE 68

Query: 104 NDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
             ++    LH A     +             ++    +    VN ++  G TA
Sbjct: 69  QAESIDNPLHEAAKRGNLSW-----------LRECLDNRV-GVNGLDKAGSTA 109

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 61.7 bits (151), Expect = 1e-11
 Identities = 32/160 (20%), Positives = 52/160 (32%), Gaps = 43/160 (26%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDVD 56
            A  G  D + E L +   L  K D R  + L  AS  G+                   +
Sbjct: 9   LAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE 68

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
             +AL LA+  G+ D++  L+    D                  +N  D NG T L  AV
Sbjct: 69  RESALSLASTGGYTDIVGLLLERDVD------------------INIYDWNGGTPLLYAV 110

Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
               ++            ++      A ++     +G+T 
Sbjct: 111 RGNHVKC-----------VEALLARGA-DLTTEADSGYTP 138

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 58.2 bits (142), Expect = 2e-10
 Identities = 26/127 (20%), Positives = 40/127 (31%), Gaps = 32/127 (25%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDVD 56
           A+  G  + V  +L    +        + SAL +AS  G                  D +
Sbjct: 43  ASAFGEIETVRFLLEWGADPHIL-AKERESALSLASTGGYTDIVGLLLERDVDINIYDWN 101

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
           G   L  A    H+  +E L+    D                  L    D+G T + LAV
Sbjct: 102 GGTPLLYAVRGNHVKCVEALLARGAD------------------LTTEADSGYTPMDLAV 143

Query: 117 ADKQIEI 123
           A    ++
Sbjct: 144 ALGYRKV 150

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 57.8 bits (141), Expect = 3e-10
 Identities = 18/131 (13%), Positives = 34/131 (25%), Gaps = 44/131 (33%)

Query: 40  ALHIASQKG--------------KCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAAS 85
           ++H  + +G                +  D  G   L  A+  G I+ +  L+    D   
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD--- 61

Query: 86  APLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIE 145
                           +       + L LA      +I           +         +
Sbjct: 62  ---------------PHILAKERESALSLASTGGYTDI-----------VGLLLERDV-D 94

Query: 146 VNAVNANGFTA 156
           +N  + NG T 
Sbjct: 95  INIYDWNGGTP 105

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 14/114 (12%), Positives = 30/114 (26%), Gaps = 32/114 (28%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-----KC--------SATDVD 56
           A+  G+ D V  +L +  ++    D    + L  A +       +         +     
Sbjct: 76  ASTGGYTDIVGLLLERDVDINIY-DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADS 134

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMT 110
           G   + LA   G+  V + +                        L  ++     
Sbjct: 135 GYTPMDLAVALGYRKVQQVIENHILK------------------LFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 17/67 (25%)

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
              ++H  A +G +D L+E +R                  G  L+N  D+ G T L  A 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRK-----------------GDNLVNKPDERGFTPLIWAS 44

Query: 117 ADKQIEI 123
           A  +IE 
Sbjct: 45  AFGEIET 51

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 61.7 bits (150), Expect = 4e-11
 Identities = 34/195 (17%), Positives = 45/195 (23%), Gaps = 55/195 (28%)

Query: 2   TILQLAVAAALLGHEDFVNEILCQKPELA----------RKSDSRKSSALHIASQKG--- 48
           T L  AV     G    +  +L    +                 +  SALHIA +K    
Sbjct: 45  TCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQ 104

Query: 49  -----------------------KCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAAS 85
                                          G   L LAA     DV+  L+      AS
Sbjct: 105 CVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS 164

Query: 86  APLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIE 145
                          L A D  G T+LH  V         + +            +    
Sbjct: 165 ---------------LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 209

Query: 146 ----VNAVNANGFTA 156
                   N  G T 
Sbjct: 210 TVQLEEISNHQGLTP 224

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 24/116 (20%)

Query: 10  AALLGHEDFVNEILCQKPELA--RKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAME 67
           AA     D V  +L    + A    +DS  ++ LH           +    +AL +   +
Sbjct: 143 AACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD----NSPENSALVIHMYD 198

Query: 68  GHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI 123
           G + +   L                           ++  G+T L LA  + +IEI
Sbjct: 199 GLLQMGARLCPTVQL------------------EEISNHQGLTPLKLAAKEGKIEI 236

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 10/73 (13%)

Query: 54  DVDGRNALHLAAM---EGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMT 110
              G+  L  A +   +G    +  L++   D+ +            +         G +
Sbjct: 40  GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP-------LVNAQCTDEFYQGHS 92

Query: 111 ILHLAVADKQIEI 123
            LH+A+  + ++ 
Sbjct: 93  ALHIAIEKRSLQC 105

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 60.1 bits (147), Expect = 5e-11
 Identities = 34/180 (18%), Positives = 58/180 (32%), Gaps = 47/180 (26%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKC-------------SATDVD 56
               G+   V   L        + D    S LH A ++G+              +  +  
Sbjct: 12  QCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG 71

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
               LHLAA  GH D++++L++ K D                  +NA +++G   LH A 
Sbjct: 72  DDTPLHLAASHGHRDIVQKLLQYKAD------------------INAVNEHGNVPLHYAC 113

Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELL 176
              Q ++            +    + A  V+  N  G    D      R+     + E  
Sbjct: 114 FWGQDQV-----------AEDLVANGA-LVSICNKYGEMPVDKAKAPLRE----LLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 53.6 bits (130), Expect = 9e-09
 Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 44/131 (33%)

Query: 40  ALHIASQKGKCS--------------ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAAS 85
            +    ++G                   D  G + LH A  EG   V+E L+        
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR--- 64

Query: 86  APLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIE 145
                          +N  +    T LHLA +    +I    + YK             +
Sbjct: 65  ---------------INVMNRGDDTPLHLAASHGHRDIVQKLLQYK------------AD 97

Query: 146 VNAVNANGFTA 156
           +NAVN +G   
Sbjct: 98  INAVNEHGNVP 108

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 43.2 bits (103), Expect = 3e-05
 Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 14/93 (15%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKC-------------SATDVD 56
           AA  GH D V ++L  K ++    +   +  LH A   G+              S  +  
Sbjct: 79  AASHGHRDIVQKLLQYKADINAV-NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKY 137

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLK 89
           G   +  A       + E   +   +    P K
Sbjct: 138 GEMPVDKAKAPLRELLRERAEKMGQNLNRIPYK 170

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 62.9 bits (154), Expect = 5e-11
 Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 44/160 (27%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATDVD 56
           AA     +    +L        +   +  + LH+A+Q+G               +  +  
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAE-SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 277

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
           G   LHL A EGH+ V + L++                      ++A    G T LH+A 
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVM------------------VDATTRMGYTPLHVAS 319

Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
               I++           +KF     A +VNA    G++ 
Sbjct: 320 HYGNIKL-----------VKFLLQHQA-DVNAKTKLGYSP 347

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 62.5 bits (153), Expect = 6e-11
 Identities = 31/161 (19%), Positives = 50/161 (31%), Gaps = 44/161 (27%)

Query: 9   AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKC-------------SATDV 55
            AA  GH +    +L  K ++  K      + LH A++ G               +    
Sbjct: 53  MAARAGHTEVAKYLLQNKAKVNAK-AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT 111

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
            G   LH+AA EGH++ +  L+  +                           G T LH+A
Sbjct: 112 AGHTPLHIAAREGHVETVLALLEKEAS------------------QACMTKKGFTPLHVA 153

Query: 116 VADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
               ++ +            +      A   NA   NG T 
Sbjct: 154 AKYGKVRV-----------AELLLERDA-HPNAAGKNGLTP 182

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 28/161 (17%), Positives = 46/161 (28%), Gaps = 44/161 (27%)

Query: 9   AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDV 55
            AA  G       +L +             + LH+A                    +   
Sbjct: 152 VAAKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW 210

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
           +G   LH+AA +  ++V   L++                       NA    G+T LHLA
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGS------------------ANAESVQGVTPLHLA 252

Query: 116 VADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
             +   E+           +    +  A   N  N +G T 
Sbjct: 253 AQEGHAEM-----------VALLLSKQA-NGNLGNKSGLTP 281

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 34/155 (21%), Positives = 52/155 (33%), Gaps = 44/155 (28%)

Query: 32  KSDSRKSSALHIASQKG-------------KCSATDVDGRNALHLAAMEGHIDVLEELVR 78
                  + LH+AS  G               + ++V     LH+AA  GH +V + L++
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68

Query: 79  --AKPDAASA----PLKSFLETREGS----ELL-------NANDDNGMTILHLAVADKQI 121
             AK +A +     PL      R G     +LL       N     G T LH+A  +  +
Sbjct: 69  NKAKVNAKAKDDQTPL--HCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV 126

Query: 122 EIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
           E            +       A     +   GFT 
Sbjct: 127 ET-----------VLALLEKEA-SQACMTKKGFTP 149

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 26/165 (15%), Positives = 46/165 (27%), Gaps = 45/165 (27%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATDVD 56
            A  GH    + ++     +         + LH+AS  G               +A    
Sbjct: 285 VAQEGHVPVADVLIKHGVMVDAT-TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL 343

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
           G + LH AA +GH D++  L++                       N    +G T L +A 
Sbjct: 344 GYSPLHQAAQQGHTDIVTLLLKNGAS------------------PNEVSSDGTTPLAIAK 385

Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTA--IEVNAVNANGFTAWDI 159
               I +                  T     V   + +  +  + 
Sbjct: 386 RLGYISV-----------TDVLKVVTDETSFVLVSDKHRMSFPET 419

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 29/119 (24%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDVD 56
           A+  G+   V  +L  + ++  K      S LH A+Q+G                    D
Sbjct: 318 ASHYGNIKLVKFLLQHQADVNAK-TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD 376

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
           G   L +A   G+I V + L     + +                +  +D + M+     
Sbjct: 377 GTTPLAIAKRLGYISVTDVLKVVTDETS---------------FVLVSDKHRMSFPETV 420

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.7 bits (151), Expect = 7e-11
 Identities = 32/163 (19%), Positives = 51/163 (31%), Gaps = 47/163 (28%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDV-------------- 55
           AA       V + L  +    ++  S ++ ALH A          V              
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHET-ALHCAVASLHPKRKQVAELLLRKGANVNEK 243

Query: 56  --DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILH 113
             D    LH+AA   H DV+E L +                      +NA D  G T LH
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKHGAK------------------MNALDSLGQTALH 285

Query: 114 LAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
            A     ++             +   +  + + + ++  GFTA
Sbjct: 286 RAALAGHLQT-----------CRLLLSYGS-DPSIISLQGFTA 316

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 43/138 (31%)

Query: 32  KSDSRKSSALHIASQKG-------------KCSATDVDGRNALHLAAMEGHIDVLEELVR 78
             + +K   L  A                  C A+D      LHLAA    + +++ L++
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ 79

Query: 79  AKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFF 138
              D                  ++A D  G+  LH A +    E+            +  
Sbjct: 80  HGAD------------------VHAKDKGGLVPLHNACSYGHYEV-----------TELL 110

Query: 139 TTSTAIEVNAVNANGFTA 156
               A  VNA++   FT 
Sbjct: 111 LKHGA-CVNAMDLWQFTP 127

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 52.5 bits (127), Expect = 9e-08
 Identities = 31/190 (16%), Positives = 52/190 (27%), Gaps = 44/190 (23%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKC-------------SATDVD 56
           AA       V  +L    ++  K D      LH A   G               +A D+ 
Sbjct: 65  AAGYNRVRIVQLLLQHGADVHAK-DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLW 123

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
               LH AA +  ++V   L+    D                      + +G + + +A 
Sbjct: 124 QFTPLHEAASKNRVEVCSLLLSHGAD------------------PTLVNCHGKSAVDMAP 165

Query: 117 ADKQIEI---WITHIT-------YKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRD 166
             +  E         +            +K       I       +  TA    A +   
Sbjct: 166 TPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETA-LHCAVASLH 223

Query: 167 IKYWEIGELL 176
            K  ++ ELL
Sbjct: 224 PKRKQVAELL 233

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 31/89 (34%)

Query: 40  ALHIASQKGKCS-------------ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA 86
            LH+A+++                 A D  G+ ALH AA+ GH+     L+    D    
Sbjct: 250 PLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD---- 305

Query: 87  PLKSFLETREGSELLNANDDNGMTILHLA 115
                          +     G T   + 
Sbjct: 306 --------------PSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 31/118 (26%)

Query: 40  ALHIASQKGKCSATDVDGRNALHLAAMEGHID-VLEELVRAKPDAASAPLKSFLETREGS 98
           AL +A    K   T    ++ L  AA  G+ + ++  L     +                
Sbjct: 7   ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN---------------- 50

Query: 99  ELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
              +A+D    T LHLA    ++ I           ++      A +V+A +  G   
Sbjct: 51  --CHASDGRKSTPLHLAAGYNRVRI-----------VQLLLQHGA-DVHAKDKGGLVP 94

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 60.1 bits (147), Expect = 1e-10
 Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 42/136 (30%)

Query: 34  DSRKSSALHIASQKG-------------KCSATDVDGRNALHLAAMEGHIDVLEELVRAK 80
              K S LH A++ G                    D R  L  AA   H++ ++ L++A 
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67

Query: 81  PDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTT 140
                               ++  D  G T LHLA      E+           +++  +
Sbjct: 68  AL------------------VDPKDAEGSTCLHLAAKKGHYEV-----------VQYLLS 98

Query: 141 STAIEVNAVNANGFTA 156
           +  ++VN  +  G+T 
Sbjct: 99  NGQMDVNCQDDGGWTP 114

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 56.3 bits (137), Expect = 2e-09
 Identities = 35/188 (18%), Positives = 62/188 (32%), Gaps = 47/188 (25%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATDVD 56
           AA  GH + V  +L          D    + +  A++                 +  D +
Sbjct: 84  AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE 143

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
               LH AA  G +D+ E L+ AK D                  L+A + +G + LH+A 
Sbjct: 144 ENICLHWAAFSGCVDIAEILLAAKCD------------------LHAVNIHGDSPLHIAA 185

Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELL 176
            + + +            +  F  S   +V   N  G T     + + +          +
Sbjct: 186 RENRYDC-----------VVLF-LSRDSDVTLKNKEGETPLQCASLNSQV----WSALQM 229

Query: 177 RRARGNSA 184
            +A  +SA
Sbjct: 230 SKALQDSA 237

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 54.7 bits (133), Expect = 8e-09
 Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 43/161 (26%)

Query: 9   AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKC-------------SATDV 55
           AAA  GH D  + ++     +       + + L  A++                    D 
Sbjct: 17  AAAEAGHVDICHMLVQAGANIDTC-SEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA 75

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
           +G   LHLAA +GH +V++ L+                   G   +N  DD G T +  A
Sbjct: 76  EGSTCLHLAAKKGHYEVVQYLLSN-----------------GQMDVNCQDDGGWTPMIWA 118

Query: 116 VADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
              K +++           +K   +  + ++N  +      
Sbjct: 119 TEYKHVDL-----------VKLLLSKGS-DINIRDNEENIC 147

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 58.6 bits (143), Expect = 1e-10
 Identities = 27/160 (16%), Positives = 50/160 (31%), Gaps = 44/160 (27%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKC-------------SATDVD 56
            A  G   ++   + Q+  +    D    + L  A+  G+                    
Sbjct: 10  LAAQGEMLYLATRIEQENVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG 68

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
             +AL LA  +G+ D+++ L+    D                  +N  D NG T L  AV
Sbjct: 69  RESALSLACSKGYTDIVKMLLDCGVD------------------VNEYDWNGGTPLLYAV 110

Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
               ++            +K    S A +      +G+ +
Sbjct: 111 HGNHVKC-----------VKMLLESGA-DPTIETDSGYNS 138

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 55.5 bits (135), Expect = 1e-09
 Identities = 24/130 (18%), Positives = 39/130 (30%), Gaps = 43/130 (33%)

Query: 40  ALHIASQKG-------------KCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA 86
           ++H  + +G               + TD +G   L  AA  G I V+E L++   D    
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD---- 61

Query: 87  PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEV 146
                                  + L LA +    +I           +K        +V
Sbjct: 62  --------------PQLLGKGRESALSLACSKGYTDI-----------VKMLLDCGV-DV 95

Query: 147 NAVNANGFTA 156
           N  + NG T 
Sbjct: 96  NEYDWNGGTP 105

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 53.9 bits (131), Expect = 5e-09
 Identities = 28/130 (21%), Positives = 41/130 (31%), Gaps = 38/130 (29%)

Query: 10  AALLGHEDFVNEILCQK---PELARKSDSRKSSALHIASQKG-----KC--------SAT 53
           AA  G    V E L Q    P+        + SAL +A  KG     K         +  
Sbjct: 43  AAAHGQIAVV-EFLLQNGADPQ---LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEY 98

Query: 54  DVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILH 113
           D +G   L  A    H+  ++ L+ +  D                       D+G   + 
Sbjct: 99  DWNGGTPLLYAVHGNHVKCVKMLLESGAD------------------PTIETDSGYNSMD 140

Query: 114 LAVADKQIEI 123
           LAVA     +
Sbjct: 141 LAVALGYRSV 150

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 20/89 (22%)

Query: 10  AALLGHEDFVNEILCQK---PELARKSDSRKSSALHIASQKGKC-------------SAT 53
           A   G+ D V ++L           + D    + L  A                   +  
Sbjct: 76  ACSKGYTDIV-KMLLDCGVDVN---EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 131

Query: 54  DVDGRNALHLAAMEGHIDVLEELVRAKPD 82
              G N++ LA   G+  V + +      
Sbjct: 132 TDSGYNSMDLAVALGYRSVQQVIESHLLK 160

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 43.1 bits (103), Expect = 3e-05
 Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 30/101 (29%)

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
               ++H  A +G +  L   +  +                    +N  D+ G T L  A
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENV------------------INHTDEEGFTPLMWA 43

Query: 116 VADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
            A  QI +           ++F   + A +   +     +A
Sbjct: 44  AAHGQIAV-----------VEFLLQNGA-DPQLLGKGRESA 72

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 59.4 bits (145), Expect = 2e-10
 Identities = 24/165 (14%), Positives = 40/165 (24%), Gaps = 48/165 (29%)

Query: 10  AALLGHEDFVNEILCQK---PELARKSDSRKSSALHIASQKGKC---------------S 51
           +      +     L  K     L    D    +  HIA   G                 +
Sbjct: 43  SVSFQAHEIT-SFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN 101

Query: 52  ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTI 111
                G   LHLA  +   +V + L+                       +   D      
Sbjct: 102 KITNQGVTCLHLAVGKKWFEVSQFLIENGAS------------------VRIKDKFNQIP 143

Query: 112 LHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
           LH A +   +++           I+         VN  +  G+T 
Sbjct: 144 LHRAASVGSLKL-----------IELLCGLGKSAVNWQDKQGWTP 177

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 59.0 bits (144), Expect = 2e-10
 Identities = 30/162 (18%), Positives = 49/162 (30%), Gaps = 44/162 (27%)

Query: 10  AALLGHEDFVNEILCQKPELA--RKSDSRKSSALHIASQKGK-------------CSATD 54
           A  +G+ + V + L  +P      K  ++  + LH+A  K                   D
Sbjct: 79  ACSVGNLEVV-KSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD 137

Query: 55  VDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHL 114
              +  LH AA  G + ++E L                    G   +N  D  G T L  
Sbjct: 138 KFNQIPLHRAASVGSLKLIELLCGL-----------------GKSAVNWQDKQGWTPLFH 180

Query: 115 AVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
           A+A+   +                      E + V+  G  A
Sbjct: 181 ALAEGHGDA-----------AVLLVEKYGAEYDLVDNKGAKA 211

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 54.0 bits (131), Expect = 1e-08
 Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 32/133 (24%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG--------------KCSATDV 55
           A      +   + L +     R  D      LH A+  G                +  D 
Sbjct: 114 AVGKKWFEVS-QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
            G   L  A  EGH D    LV                 + G+E  +  D+ G     +A
Sbjct: 173 QGWTPLFHALAEGHGDAAVLLV----------------EKYGAE-YDLVDNKGAKAEDVA 215

Query: 116 VADKQIEIWITHI 128
           + ++  + ++ ++
Sbjct: 216 LNEQVKKFFLNNV 228

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 53.2 bits (129), Expect = 2e-08
 Identities = 27/151 (17%), Positives = 43/151 (28%), Gaps = 46/151 (30%)

Query: 40  ALHIASQKGKCS--------------ATDVDGRNALHLAAMEGHIDVLEELVR--AKPDA 83
            LH A  + +                  D DGR  LH +      ++   L+      + 
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

Query: 84  ASAPLKS-----FLETREGS----ELL---------NANDDNGMTILHLAVADKQIEIWI 125
              P  S      +    G+    + L         N   + G+T LHLAV  K  E+  
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV-- 122

Query: 126 THITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
                     +F   + A  V   +      
Sbjct: 123 ---------SQFLIENGA-SVRIKDKFNQIP 143

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 39.4 bits (93), Expect = 9e-04
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 17/67 (25%)

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
               LH A ME     ++EL           L S     + S  L   D +G   LH +V
Sbjct: 2   SNYPLHQACMENEFFKVQEL-----------LHS-----KPSL-LLQKDQDGRIPLHWSV 44

Query: 117 ADKQIEI 123
           + +  EI
Sbjct: 45  SFQAHEI 51

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 40/224 (17%), Positives = 69/224 (30%), Gaps = 57/224 (25%)

Query: 1   MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS--------- 51
               QL      +G E    E    K +  +       +    A   G            
Sbjct: 9   KRNEQLK---RWIGSET-DLEPPVVKRKKTKVKFD-DGAVFLAACSSGDTEEVLRLLERG 63

Query: 52  ----ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDN 107
                 +VDG  ALH A ++ ++D+++ LV    +                  +N  D+ 
Sbjct: 64  ADINYANVDGLTALHQACIDDNVDMVKFLVENGAN------------------INQPDNE 105

Query: 108 GMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDI 167
           G   LH A +   ++I            ++  +  A  V AVN+ G T  DI  +   + 
Sbjct: 106 GWIPLHAAASCGYLDI-----------AEYLISQGA-HVGAVNSEGDTPLDIAEEEAME- 152

Query: 168 KYWEIGELL---RRARGNSAKDMHLPANELAVTQTNSLTSHENN 208
              E+ +     +     +A+            Q   L S   N
Sbjct: 153 ---ELLQNEVNRQGVDIEAARKEEERIMLRDARQW--LNSGHIN 191

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 25/128 (19%), Positives = 37/128 (28%), Gaps = 32/128 (25%)

Query: 9   AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKC-------------SATDV 55
               +   D    +        R + S  + ALH+A+ KG               +  D 
Sbjct: 172 EEERIMLRDARQWLNSGHINDVRHAKSGGT-ALHVAAAKGYTEVLKLLIQARYDVNIKDY 230

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
           DG   LH AA  G  +    LV    D                  + A +  G T   +A
Sbjct: 231 DGWTPLHAAAHWGKEEACRILVENLCD------------------MEAVNKVGQTAFDVA 272

Query: 116 VADKQIEI 123
             D    +
Sbjct: 273 DEDILGYL 280

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 49.8 bits (120), Expect = 5e-07
 Identities = 24/117 (20%), Positives = 36/117 (30%), Gaps = 26/117 (22%)

Query: 54  DVDGRNALHLAAMEGHIDVLEELV--RAKPDAASAPLKSFLE-TREGS----ELL----- 101
           D   +    L    G    LE  V  R K          FL     G       L     
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA 64

Query: 102 --NANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
             N  + +G+T LH A  D  +++           +KF   + A  +N  +  G+  
Sbjct: 65  DINYANVDGLTALHQACIDDNVDM-----------VKFLVENGA-NINQPDNEGWIP 109

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 49.8 bits (120), Expect = 5e-07
 Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 54/180 (30%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATDVD 56
           A     E+ +            +      +A     +                       
Sbjct: 146 AEEEAMEELLQN-------EVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS 198

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
           G  ALH+AA +G+ +VL+ L++A+ D                  +N  D +G T LH A 
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYD------------------VNIKDYDGWTPLHAAA 240

Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELL 176
              + E             +    +   ++ AVN  G TA+D+  +         + EL 
Sbjct: 241 HWGKEEA-----------CRILVENLC-DMEAVNKVGQTAFDVADEDILG----YLEELQ 284

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 18/201 (8%), Positives = 52/201 (25%), Gaps = 51/201 (25%)

Query: 9   AAALLGHEDFVNEILCQKPELARKSDSRKS--SALHIASQKGKCS-------------AT 53
           AAA+LG  +   E+  +  E              L   + + +               + 
Sbjct: 12  AAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSR 71

Query: 54  DVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELL-------NANDD 106
             +G          G  D+                       E  ++         A   
Sbjct: 72  TKEGTTLFFPLFQGGGNDITGTT-------------------ELCKIFLEKGADITALYK 112

Query: 107 NGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRD 166
               ++   + +  ++             K   + + +++   +  G TA + + + ++ 
Sbjct: 113 PYKIVVFKNIFNYFVD-----ENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP 167

Query: 167 IKYWEIGELLRRARGN-SAKD 186
                  +++       + K+
Sbjct: 168 ----IALKMMEDYIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 18/123 (14%), Positives = 32/123 (26%), Gaps = 24/123 (19%)

Query: 52  ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAA----------SAPLKSFLETR-EGSEL 100
           +  +     +  AAM G  +   EL     +                 +  E R + S  
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60

Query: 101 L-------NANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANG 153
           L        +    G T+          +     IT  +   K F    A ++ A+    
Sbjct: 61  LINKGADIKSRTKEGTTLFFPLFQGGGND-----ITGTTELCKIFLEKGA-DITALYKPY 114

Query: 154 FTA 156
              
Sbjct: 115 KIV 117

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 59.9 bits (146), Expect = 4e-10
 Identities = 23/163 (14%), Positives = 41/163 (25%), Gaps = 47/163 (28%)

Query: 9   AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS---------------AT 53
                   + VNEI       +     +  +ALH     G                  A 
Sbjct: 117 LLNECDERE-VNEIG------SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK 169

Query: 54  DVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILH 113
           D      L  A    + + L+ ++   P  +S               L+  +  G + LH
Sbjct: 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLR-------------LDYANKQGNSHLH 216

Query: 114 LAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
            A+     ++              F      +VN  +      
Sbjct: 217 WAILINWEDV-----------AMRFVEMGI-DVNMEDNEHTVP 247

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.3 bits (142), Expect = 1e-09
 Identities = 29/167 (17%), Positives = 49/167 (29%), Gaps = 44/167 (26%)

Query: 32  KSDSRKSSALHIASQKG-------------KCSATDVDGRNALHLAAMEGHIDVLEELVR 78
           KSD      +H+A++KG               +  +  G  ALHLA   G +D  + L  
Sbjct: 15  KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS 74

Query: 79  AKPDAASA----PLKSFLETREGSE-----LLNANDDNGMTILHLAVADKQIEIWITHIT 129
                +      P+   L            L+    + G     L     + E+      
Sbjct: 75  VGEVHSLWHGQKPI--HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREV------ 126

Query: 130 YKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELL 176
                         I  +  +  G TA           +Y E+ ++L
Sbjct: 127 ------------NEIGSHVKHCKGQTAL-HWC-VGLGPEYLEMIKIL 159

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 31/165 (18%), Positives = 48/165 (29%), Gaps = 33/165 (20%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSAT-----------DVDGR 58
           AA  G  D V  ++        + +    +ALH+A + G                   G+
Sbjct: 27  AARKGQTDEVRRLIETGVSPTIQ-NRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQ 85

Query: 59  NALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSE-----LLNANDDNGMTILH 113
             +HLA M    D++  LV    +    P    L              +     G T LH
Sbjct: 86  KPIHLAVMANKTDLVVALVEGAKERGQMPE--SLLNECDEREVNEIGSHVKHCKGQTALH 143

Query: 114 LAVA--DKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
             V    + +E+           IK      A    A +    T 
Sbjct: 144 WCVGLGPEYLEM-----------IKILVQLGA-SPTAKDKADETP 176

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 56.8 bits (138), Expect = 4e-09
 Identities = 18/167 (10%), Positives = 47/167 (28%), Gaps = 38/167 (22%)

Query: 9   AAALLGHEDFVNEILCQKPELAR----KSDSRKSSALHIASQKGKCS------------- 51
            A    + + ++ ++   P  +      ++ + +S LH A                    
Sbjct: 179 RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN 238

Query: 52  ATDVDGRNALHLAAMEGHIDVLEELV--RAKPDAASAPLKSFLETREGSELLNANDDNGM 109
             D +    L+L+     + + +EL+         + P  +      G+  +  +    +
Sbjct: 239 MEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHN------GTT-VLPDRVVWL 291

Query: 110 TILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
             +  A    + E+           ++        EV      G   
Sbjct: 292 DFVPAAADPSKQEV-----------LQLLQEKLD-EVVRSLNTGAGG 326

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 6/131 (4%), Positives = 21/131 (16%), Gaps = 43/131 (32%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKS------------SALHIASQKGKC------- 50
           +          E+L +      ++    +              +  A+   K        
Sbjct: 251 SVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ 310

Query: 51  ------SATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNAN 104
                   +   G         +    V    +                       +   
Sbjct: 311 EKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAP------------------VRTR 352

Query: 105 DDNGMTILHLA 115
             +      ++
Sbjct: 353 SRSRARSSAVS 363

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 57.5 bits (140), Expect = 5e-10
 Identities = 19/136 (13%), Positives = 37/136 (27%), Gaps = 42/136 (30%)

Query: 34  DSRKSSALHIASQKGKCS-------------ATDVDGRNALHLAAMEGHIDVLEELVRAK 80
                + L  A+Q+                   D +G   L++A     I++ + L+   
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 81  PDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTT 140
            D                  +N  +    +    A A  + EI           + +   
Sbjct: 63  AD------------------INLQNSISDSPYLYAGAQGRTEI-----------LAYMLK 93

Query: 141 STAIEVNAVNANGFTA 156
               ++N  N  G  A
Sbjct: 94  HATPDLNKHNRYGGNA 109

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 55.1 bits (134), Expect = 3e-09
 Identities = 20/161 (12%), Positives = 46/161 (28%), Gaps = 42/161 (26%)

Query: 9   AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKC-------------SATDV 55
           AA     +     +     ++    D+  ++ L+IA                   +  + 
Sbjct: 12  AANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNS 70

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
              +    A  +G  ++L  ++                 +  +  LN ++  G   L  A
Sbjct: 71  ISDSPYLYAGAQGRTEILAYML-----------------KHATPDLNKHNRYGGNALIPA 113

Query: 116 VADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
                I+            +K        +++  N  G+TA
Sbjct: 114 AEKGHIDN-----------VKLLLEDGREDIDFQNDFGYTA 143

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 45.1 bits (108), Expect = 8e-06
 Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 37/133 (27%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKC--------------SATDV 55
           A   G  + +  +L        K +    +AL  A++KG                   + 
Sbjct: 79  AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND 138

Query: 56  DGRNALHLAAM-----EGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMT 110
            G  AL  A       + + D+++ L+    D                   +  D++G T
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLLMENGAD------------------QSIKDNSGRT 180

Query: 111 ILHLAVADKQIEI 123
            +  A      EI
Sbjct: 181 AMDYANQKGYTEI 193

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 58.3 bits (141), Expect = 8e-10
 Identities = 32/197 (16%), Positives = 51/197 (25%), Gaps = 58/197 (29%)

Query: 2   TILQLAVAAALLGHEDFVNEILCQK-------PELA----RKSDSRKSSALHIASQKG-- 48
           T L  A+     G  D +  +L           +        S  +  +ALHIA ++   
Sbjct: 56  TCLLKAMLNLHNGQNDTI-ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNM 114

Query: 49  -------------------------KCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDA 83
                                    K       G   L LAA    + +++ L++     
Sbjct: 115 TLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP 174

Query: 84  ASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRA----IKFFT 139
           A                ++A D  G T+LH  V      +  T            +    
Sbjct: 175 AD---------------ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKL 219

Query: 140 TSTAIEVNAVNANGFTA 156
             T       N  G T 
Sbjct: 220 HPTLKLEEITNRKGLTP 236

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 21/138 (15%), Positives = 33/138 (23%), Gaps = 56/138 (40%)

Query: 10  AALLGHEDFVNEILCQKPELA--RKSDSRKSSALHIASQKGKCS---------------- 51
           AA       V  +L    + A     DS  ++ LH   +    +                
Sbjct: 155 AACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI 214

Query: 52  -------------ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGS 98
                         T+  G   L LAA  G I VL  +++                    
Sbjct: 215 LGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ-------------------- 254

Query: 99  ELLNANDDNGMTILHLAV 116
                 + +     H A 
Sbjct: 255 -----REIHEPECRHAAA 267

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 21/144 (14%), Positives = 37/144 (25%), Gaps = 33/144 (22%)

Query: 10  AALLGHEDFVNEILCQK--------------PELARKSDSRKSSALHIASQKGKC----- 50
           A    +   V  +L +                   R         L +A+   +      
Sbjct: 108 AIERRNMTLV-TLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF 166

Query: 51  -----------SATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSE 99
                      SA D  G   LH         V  +  +      +  L    +     +
Sbjct: 167 LLQNSWQPADISARDSVGNTVLHALVEVADNTV--DNTKFVTSMYNEILILGAKLHPTLK 224

Query: 100 LLNANDDNGMTILHLAVADKQIEI 123
           L    +  G+T L LA +  +I +
Sbjct: 225 LEEITNRKGLTPLALAASSGKIGV 248

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 57.9 bits (141), Expect = 9e-10
 Identities = 26/163 (15%), Positives = 49/163 (30%), Gaps = 33/163 (20%)

Query: 10  AALLGHEDFVNEILCQK---PELARKSDSRKSSALHIASQKGKCS-------------AT 53
           A +  HE F+ + L       E     +    +ALH+A+  G+ S               
Sbjct: 16  AVIHQHEPFL-DFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA 74

Query: 54  DVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILH 113
           +  G  ALHLA           L++ +P        ++L     ++  +   D       
Sbjct: 75  ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYL-----TQSQDCTPDTSHAPAA 129

Query: 114 LAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
           +                     +       +++ A N +G T 
Sbjct: 130 VDSQPNPENE-----------EEPRDEDWRLQLEAENYDGHTP 161

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 30/166 (18%), Positives = 44/166 (26%), Gaps = 38/166 (22%)

Query: 52  ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTI 111
               DG  ALHLA +  H   L+ L+                     E L+  +D G T 
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---------------EYLDLQNDLGQTA 48

Query: 112 LHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWE 171
           LHLA    +              ++    + A  V      G TA  +  + +       
Sbjct: 49  LHLAAILGEAST-----------VEKLYAAGA-GVLVAERGGHTALHLACRVRAH----T 92

Query: 172 IGELL--RRARGNSAKDMHLPANELAVTQTNSLT-----SHENNQK 210
              +L   R                  T   S       S  N + 
Sbjct: 93  CACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPEN 138

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.9 bits (128), Expect = 4e-08
 Identities = 14/127 (11%), Positives = 33/127 (25%), Gaps = 31/127 (24%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDVD 56
           A +    + V  +     +L +   +   + LH+A +    S             A    
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
           GR  L  A +  +  +   L                           +  + ++    + 
Sbjct: 225 GRTPLGSALLRPNPILARLLRAHGAP------------------EPEDGGDKLSPCSSSG 266

Query: 117 ADKQIEI 123
           +D   + 
Sbjct: 267 SDSDSDN 273

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 34/100 (34%)

Query: 40  ALHIASQKG----------------KCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDA 83
           ALH+A                         +  G+ ALHLAA+ G    +E+L  A    
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG- 70

Query: 84  ASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI 123
                            +   +  G T LHLA   +    
Sbjct: 71  -----------------VLVAERGGHTALHLACRVRAHTC 93

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 49.1 bits (118), Expect = 9e-07
 Identities = 24/192 (12%), Positives = 44/192 (22%), Gaps = 60/192 (31%)

Query: 10  AALLGHEDFVNEILCQK-------------PELARKSDSRKSSALHIASQKGKCS----- 51
           A  +        +L Q               +    +     +   + SQ    +     
Sbjct: 85  ACRVRAHTCA-CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPR 143

Query: 52  ---------ATDVDGRNALHLAAMEGHIDVLEELV--RAKPDAASA-----PLKSFLETR 95
                    A + DG   LH+A +    +++  L    A  +         PL   L   
Sbjct: 144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL--HLAVE 201

Query: 96  EGS----ELL-------NANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAI 144
             +    ELL        A    G T L  A+      +      +              
Sbjct: 202 AQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG------------A 249

Query: 145 EVNAVNANGFTA 156
                  +  + 
Sbjct: 250 PEPEDGGDKLSP 261

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 7/80 (8%), Positives = 17/80 (21%), Gaps = 14/80 (17%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKC-------------SATDVD 56
           A        +  +L    +   +      + L  A  +                     D
Sbjct: 199 AVEAQAASVLELLLKAGADPTAR-MYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGD 257

Query: 57  GRNALHLAAMEGHIDVLEEL 76
             +    +  +   D  +E 
Sbjct: 258 KLSPCSSSGSDSDSDNRDEG 277

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 43/171 (25%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKC-------------SATDVD 56
           AA  G  + V ++   +    R  + R+S+ LH A+   +               A D  
Sbjct: 15  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 74

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
           G   LH A   GH +V E LV+                      +N  D    T LH A 
Sbjct: 75  GLVPLHNACSYGHYEVAELLVKHGAV------------------VNVADLWKFTPLHEAA 116

Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDI 167
           A  + EI            K      A +    N +G T  D++     DI
Sbjct: 117 AKGKYEI-----------CKLLLQHGA-DPTKKNRDGNTPLDLVKDGDTDI 155

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 46.2 bits (111), Expect = 3e-06
 Identities = 23/121 (19%), Positives = 36/121 (29%), Gaps = 32/121 (26%)

Query: 54  DVDGRNALHLAAMEGHIDVLEEL-------VRAKPDAASAPLKSFLETREGS----ELL- 101
           + +    L  AA  G ++ +++L        R      S PL              E L 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPL--HFAAGYNRVSVVEYLL 62

Query: 102 ------NANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFT 155
                 +A D  G+  LH A +    E+            +      A  VN  +   FT
Sbjct: 63  QHGADVHAKDKGGLVPLHNACSYGHYEV-----------AELLVKHGA-VVNVADLWKFT 110

Query: 156 A 156
            
Sbjct: 111 P 111

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 57.5 bits (140), Expect = 1e-09
 Identities = 35/179 (19%), Positives = 58/179 (32%), Gaps = 64/179 (35%)

Query: 9   AAALLGHEDFVNEILCQK----------PELARKSDSRKSSALHIASQKG---------- 48
            AA+ G    + + L ++           E   +     ++AL  A++KG          
Sbjct: 111 EAAVYGKVKAL-KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169

Query: 49  ----KCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELL--- 101
                 +A D  GRNAL  A +      +E +                       LL   
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAIT---------------------HLLLDH 208

Query: 102 ----NANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
               N   + G T L LAV  K + +           ++       IE+N  +++G TA
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGL-----------VQRLLEQEHIEINDTDSDGKTA 256

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 56.3 bits (137), Expect = 3e-09
 Identities = 33/182 (18%), Positives = 52/182 (28%), Gaps = 37/182 (20%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDVD 56
           A  +  ED V  +L    +   +     ++   +A+  G                  D  
Sbjct: 46  AVQMSREDIVELLLRHGADPVLR-KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFY 104

Query: 57  GRNALHLAAMEGHIDVLEELVR--AKPDAASAPLKSFLETREGSELLNANDDNGMTILHL 114
           G  A   AA+ G +  L+ L +  A  +             +  E        G T L  
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRR----------KTKEDQERLRKGGATALMD 154

Query: 115 AVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGE 174
           A     +E+           +K        +VNA +  G  A      S  D     I  
Sbjct: 155 AAEKGHVEV-----------LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH 203

Query: 175 LL 176
           LL
Sbjct: 204 LL 205

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 56.3 bits (137), Expect = 4e-09
 Identities = 20/128 (15%), Positives = 37/128 (28%), Gaps = 31/128 (24%)

Query: 9   AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKC-------------SATDV 55
            A      D V ++L     +  + +    + LH A Q  +                   
Sbjct: 11  KAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK 70

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
           +G     LAA+ G + +L+  +    D                  +N  D  G T    A
Sbjct: 71  NGATPFLLAAIAGSVKLLKLFLSKGAD------------------VNECDFYGFTAFMEA 112

Query: 116 VADKQIEI 123
               +++ 
Sbjct: 113 AVYGKVKA 120

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 49.0 bits (118), Expect = 7e-07
 Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 34/101 (33%)

Query: 40  ALHIASQKGKCS-----------------ATDVDGRNALHLAAMEGHIDVLEELVRAKPD 82
           AL  A      S                      G+  L LA  + H+ +++ L+     
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL----- 239

Query: 83  AASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI 123
                       +E  E+ N  D +G T L LAV  K  +I
Sbjct: 240 -----------EQEHIEI-NDTDSDGKTALLLAVELKLKKI 268

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 26/132 (19%), Positives = 38/132 (28%), Gaps = 44/132 (33%)

Query: 39  SALHIASQKGKCS-------------ATDVDGRN-ALHLAAMEGHIDVLEELVRAKPDAA 84
             L  A Q                    + +G    LH A      D++E L+R   D  
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-- 64

Query: 85  SAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAI 144
                                 NG T   LA     +++           +K F +  A 
Sbjct: 65  ----------------PVLRKKNGATPFLLAAIAGSVKL-----------LKLFLSKGA- 96

Query: 145 EVNAVNANGFTA 156
           +VN  +  GFTA
Sbjct: 97  DVNECDFYGFTA 108

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 40.5 bits (96), Expect = 5e-04
 Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 19/86 (22%)

Query: 10  AALLGHEDFVNEI----LCQKPELARKSDSRKSSALHIASQKGKCS-------------- 51
           A L   +  V  I    L    ++  + +  K+  L +A +K                  
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKT-PLILAVEKKHLGLVQRLLEQEHIEIN 247

Query: 52  ATDVDGRNALHLAAMEGHIDVLEELV 77
            TD DG+ AL LA       + E L 
Sbjct: 248 DTDSDGKTALLLAVELKLKKIAELLC 273

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 55.1 bits (134), Expect = 2e-09
 Identities = 41/181 (22%), Positives = 66/181 (36%), Gaps = 49/181 (27%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDVD 56
           AA  G +D V  ++               S LH+A+Q G  S             A    
Sbjct: 9   AARAGQDDEVRILMANGAPFTTDWLGT--SPLHLAAQYGHFSTTEVLLRAGVSRDARTKV 66

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
            R  LH+AA EGH +++E L++   D                  +NA D   MT LH A 
Sbjct: 67  DRTPLHMAASEGHANIVEVLLKHGAD------------------VNAKDMLKMTALHWAT 108

Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELL 176
                E+           ++      A +V+  +    TA+DI   +  +    ++ E+L
Sbjct: 109 EHNHQEV-----------VELLIKYGA-DVHTQSKFCKTAFDISIDNGNE----DLAEIL 152

Query: 177 R 177
           +
Sbjct: 153 Q 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 41.2 bits (98), Expect = 1e-04
 Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 30/117 (25%)

Query: 56  DGRNALHLAAMEGHIDVLEELVR-----AKPDAASAPLKSFLETREGS----ELL----- 101
           D    L  AA  G  D +  L+            ++PL   L  + G     E+L     
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPL--HLAAQYGHFSTTEVLLRAGV 58

Query: 102 --NANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
             +A      T LH+A ++    I           ++      A +VNA +    TA
Sbjct: 59  SRDARTKVDRTPLHMAASEGHANI-----------VEVLLKHGA-DVNAKDMLKMTA 103

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 22/179 (12%), Positives = 46/179 (25%), Gaps = 49/179 (27%)

Query: 9   AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKC-------------SATDV 55
            A    +   V   L      A K+       LH A+                  S  D 
Sbjct: 37  YAIADNNVRLV-CTLLNA--GALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDD 93

Query: 56  DGRNALHLAAMEGHIDVLEELVR--AKPDAASAPLKSFLET------REGS----ELL-- 101
            G  AL+ A   G++  ++  V+   +        K+  +T                   
Sbjct: 94  KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYG---KTGWKTSFYHAVMLNDVSIVSYFLS 150

Query: 102 ----NANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
                 +    ++ +H+ + +  +++           +           N  N+  F  
Sbjct: 151 EIPSTFDLAILLSCIHITIKNGHVDM-----------MILLLDYMT-STNTNNSLLFIP 197

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 18/127 (14%), Positives = 37/127 (29%), Gaps = 31/127 (24%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS------------ATDVDG 57
           A   G+   V   + +   L     +   ++ + A      S                  
Sbjct: 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAIL 161

Query: 58  RNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMT-ILHLAV 116
            + +H+    GH+D++  L+                        N N+       + LA+
Sbjct: 162 LSCIHITIKNGHVDMMILLLDYMTS------------------TNTNNSLLFIPDIKLAI 203

Query: 117 ADKQIEI 123
            +K IE+
Sbjct: 204 DNKDIEM 210

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 51.8 bits (125), Expect = 9e-08
 Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 29/103 (28%)

Query: 32  KSDSRKSSALHIASQKG-----------KCSATDVDGRNALHLAAMEGHIDVLEELVRAK 80
           K+D    SA + A                     ++    LH AA      +++ L+ + 
Sbjct: 26  KADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSG 85

Query: 81  PDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI 123
            D                   +  DD G T L+ AV    ++ 
Sbjct: 86  LD------------------DSQFDDKGNTALYYAVDSGNMQT 110

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 18/149 (12%), Positives = 40/149 (26%), Gaps = 30/149 (20%)

Query: 9   AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDV 55
            A +L     V+  L + P     +     S +HI  + G                  + 
Sbjct: 135 HAVMLNDVSIVSYFLSEIPSTFDLAILL--SCIHITIKNGHVDMMILLLDYMTSTNTNNS 192

Query: 56  DGR-NALHLAAMEGHIDVLEELVR--AKPDAA--SAPLKSFLETREGSELL-------NA 103
                 + LA     I++L+ L +      +A     L    E    ++++        +
Sbjct: 193 LLFIPDIKLAIDNKDIEMLQALFKYDINIYSANLENVLLDDAEI---AKMIIEKHVEYKS 249

Query: 104 NDDNGMTILHLAVADKQIEIWITHITYKS 132
           +       +       +I      +    
Sbjct: 250 DSYTKDLDIVKNNKLDEIISKNKELRLMY 278

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 56.3 bits (137), Expect = 3e-09
 Identities = 27/161 (16%), Positives = 46/161 (28%), Gaps = 46/161 (28%)

Query: 9   AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATDV 55
            A + G  D VN +L     +  +SD   +S +H A+++G                    
Sbjct: 131 NACVSGSWDCVNLLLQHGASVQPESD--LASPIHEAARRGHVECVNSLIAYGGNIDHKIS 188

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
                L+LA        +++L+ +  D                  +N       + LH  
Sbjct: 189 HLGTPLYLACENQQRACVKKLLESGAD------------------VNQ-GKGQDSPLHAV 229

Query: 116 VADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
           V     E+                   A +  A NA G   
Sbjct: 230 VRTASEEL-----------ACLLMDFGA-DTQAKNAEGKRP 258

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 56.0 bits (136), Expect = 5e-09
 Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 33/127 (25%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDVD 56
           +   G  DF    L   P +         S +H A+  G                    D
Sbjct: 34  SKPAGPRDFPGIRLLSNPLMGDAVSDW--SPMHEAAIHGHQLSLRNLISQGWAVNIITAD 91

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
             + LH A + GH+  ++ L++                      +N    +  T L  A 
Sbjct: 92  HVSPLHEACLGGHLSCVKILLKHGAQ------------------VNGVTADWHTPLFNAC 133

Query: 117 ADKQIEI 123
                + 
Sbjct: 134 VSGSWDC 140

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 54.0 bits (131), Expect = 2e-08
 Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 34/145 (23%)

Query: 9   AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDV 55
            AA+ GH+  +  ++ Q   +     +   S LH A   G  S                 
Sbjct: 65  EAAIHGHQLSLRNLISQGWAVNII-TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA 123

Query: 56  DGRNALHLAAMEGHIDVLEELVR--AKPDAAS--------APLKSFLETREGSELL---- 101
           D    L  A + G  D +  L++  A     S        A  +  +E       L    
Sbjct: 124 DWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVEC---VNSLIAYG 180

Query: 102 ---NANDDNGMTILHLAVADKQIEI 123
              +    +  T L+LA  ++Q   
Sbjct: 181 GNIDHKISHLGTPLYLACENQQRAC 205

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 19/126 (15%), Positives = 37/126 (29%), Gaps = 31/126 (24%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSAT--------DV----DG 57
           AA  GH + VN ++     +  K  S   + L++A +  + +          DV      
Sbjct: 164 AARRGHVECVNSLIAYGGNIDHK-ISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQ 222

Query: 58  RNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVA 117
            + LH        ++   L+    D                    A +  G   + L   
Sbjct: 223 DSPLHAVVRTASEELACLLMDFGAD------------------TQAKNAEGKRPVELVPP 264

Query: 118 DKQIEI 123
           +  +  
Sbjct: 265 ESPLAQ 270

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 55.9 bits (136), Expect = 3e-09
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 31/120 (25%)

Query: 9   AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDV 55
            AA+    D V   + +   + +      S+ LH A+++G  S               D 
Sbjct: 48  WAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDG 107

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
           +G + +HLAA  GH  ++  L+    D                  ++  D NGMT L  A
Sbjct: 108 EGCSCIHLAAQFGHTSIVAYLIAKGQD------------------VDMMDQNGMTPLMWA 149

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 53.2 bits (129), Expect = 2e-08
 Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 45/154 (29%)

Query: 34  DSRKSSALHIASQKGKCS-------------ATDVDGRNALHLAAMEGHIDVLEELVR-- 78
           D   +  +  A+Q G                  D +    LH AA+   ID+++  +   
Sbjct: 6   DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKG 65

Query: 79  AKPDAASA-----PLKSFLETREGS----ELL-------NANDDNGMTILHLAVADKQIE 122
           A  D         PL     TR+G       L       +  D  G + +HLA       
Sbjct: 66  AIVDQLGGDLNSTPL--HWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS 123

Query: 123 IWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
           I           + +   +   +V+ ++ NG T 
Sbjct: 124 I-----------VAYL-IAKGQDVDMMDQNGMTP 145

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.7 bits (120), Expect = 3e-07
 Identities = 39/192 (20%), Positives = 58/192 (30%), Gaps = 50/192 (26%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDVD 56
           A   GH   V +++    + +   D    S +H+A+Q G  S               D +
Sbjct: 83  ATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN 141

Query: 57  GRNALHLAAMEGH-IDVLEELVRAKPDAASAPLKSFLETREGSELLNANDD-NGMTILHL 114
           G   L  AA   H +D    L+                       +N  D  +  T LH 
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTFNVS------------------VNLGDKYHKNTALHW 183

Query: 115 AVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGE 174
           AV      +           I          V+A N  G +A D+  Q K       +  
Sbjct: 184 AVLAGNTTV-----------ISLL-LEAGANVDAQNIKGESALDLAKQRKNV----WMIN 227

Query: 175 LLRRARGNSAKD 186
            L+ AR     D
Sbjct: 228 HLQEARQAKGYD 239

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 46.3 bits (111), Expect = 5e-06
 Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 18/72 (25%)

Query: 52  ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTI 111
             D      +  A   G  +   ELV A  D                  +   D   +T+
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAGYD------------------VRQPDKENVTL 45

Query: 112 LHLAVADKQIEI 123
           LH A  + +I++
Sbjct: 46  LHWAAINNRIDL 57

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 53.6 bits (130), Expect = 4e-09
 Identities = 35/165 (21%), Positives = 53/165 (32%), Gaps = 47/165 (28%)

Query: 33  SDSRKSSALHIASQKG-------------KCSATDVDGRNALHLAAMEGHIDVLEELVRA 79
           ++ R  + LHIAS KG               +  D  G   LH A   GH+ V+E L++ 
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65

Query: 80  KPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFT 139
           K                    +N       + LH A  +  ++I           +K   
Sbjct: 66  KAL------------------VNTTGYQNDSPLHDAAKNGHVDI-----------VKLLL 96

Query: 140 TSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA 184
           +  A   NAVN  G    D             +  L  +   +SA
Sbjct: 97  SYGA-SRNAVNIFGLRPVDYTDDESMK----SLLLLPEKNESSSA 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 14/89 (15%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVD 56
           A   GH   V E+L Q   L   +  +  S LH A++ G               +A ++ 
Sbjct: 50  ACNHGHLKVV-ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF 108

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAAS 85
           G   +     E    +L    + +  +AS
Sbjct: 109 GLRPVDYTDDESMKSLLLLPEKNESSSAS 137

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 54.3 bits (132), Expect = 4e-09
 Identities = 31/180 (17%), Positives = 63/180 (35%), Gaps = 49/180 (27%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIAS-----------QKG-KCSATDVDG 57
           AA  G    V  +L ++       +    +AL +             ++G   +  D  G
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSG 68

Query: 58  RNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVA 117
            + +H AA  G +D L+ LV    D                  +N  D  G   +HLAV 
Sbjct: 69  TSPVHDAARTGFLDTLKVLVEHGAD------------------VNVPDGTGALPIHLAVQ 110

Query: 118 DKQIEIWITHITY-KSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELL 176
           +    +    +++  + +          +++  +A G T  ++  Q        ++ ++L
Sbjct: 111 EGHTAV----VSFLAAES----------DLHRRDARGLTPLELALQRGAQ----DLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 48.2 bits (116), Expect = 5e-07
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 45/131 (34%)

Query: 40  ALHIASQKGKCS--------------ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAAS 85
            L  A+ +G                 A +  G+ AL +    G   +  EL++       
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS--- 60

Query: 86  APLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIE 145
                           N  D +G + +H A     ++            +K      A +
Sbjct: 61  ---------------PNVQDTSGTSPVHDAARTGFLDT-----------LKVLVEHGA-D 93

Query: 146 VNAVNANGFTA 156
           VN  +  G   
Sbjct: 94  VNVPDGTGALP 104

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 42.4 bits (101), Expect = 5e-05
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 13/80 (16%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS------------ATDVDG 57
           AA  G  D + ++L +        D   +  +H+A Q+G  +              D  G
Sbjct: 75  AARTGFLDTL-KVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARG 133

Query: 58  RNALHLAAMEGHIDVLEELV 77
              L LA   G  D+++ L 
Sbjct: 134 LTPLELALQRGAQDLVDILQ 153

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 54.3 bits (132), Expect = 5e-09
 Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 43/130 (33%)

Query: 40  ALHIASQKGKC-------------SATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA 86
            L  A++ G+              +A D  G   LHLAA  GH++++E L++   D    
Sbjct: 17  KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD---- 72

Query: 87  PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEV 146
                         +NA D  GMT L LA     +EI           ++    + A +V
Sbjct: 73  --------------VNAVDHAGMTPLRLAALFGHLEI-----------VEVLLKNGA-DV 106

Query: 147 NAVNANGFTA 156
           NA +  G T 
Sbjct: 107 NANDMEGHTP 116

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 52.4 bits (127), Expect = 2e-08
 Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 44/160 (27%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKC-------------SATDVD 56
           AA  G +D V  ++    ++  + D+   + LH+A+  G               +A D  
Sbjct: 21  AARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA 79

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
           G   L LAA+ GH++++E L++   D                  +NAND  G T LHLA 
Sbjct: 80  GMTPLRLAALFGHLEIVEVLLKNGAD------------------VNANDMEGHTPLHLAA 121

Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
               +EI           ++    + A +VNA +  G TA
Sbjct: 122 MFGHLEI-----------VEVLLKNGA-DVNAQDKFGKTA 149

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 31/97 (31%)

Query: 40  ALHIASQKGKC-------------SATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA 86
            L +A+  G               +A D++G   LHLAAM GH++++E L++   D    
Sbjct: 83  PLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---- 138

Query: 87  PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI 123
                         +NA D  G T   +++ +   ++
Sbjct: 139 --------------VNAQDKFGKTAFDISIDNGNEDL 161

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 52.7 bits (128), Expect = 7e-09
 Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 38/130 (29%)

Query: 10  AALLGHEDFVNEILCQK---PELARKSDSRKSSALHIASQKGKCS-------------AT 53
           AA  GH + V ++L +           D    + LH+A++ G                A 
Sbjct: 9   AARNGHLEVV-KLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

Query: 54  DVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILH 113
           D +GR  LHLAA  GH++V++ L+ A  D                  +NA D NG T LH
Sbjct: 65  DKNGRTPLHLAARNGHLEVVKLLLEAGAD------------------VNAKDKNGRTPLH 106

Query: 114 LAVADKQIEI 123
           LA  +  +E+
Sbjct: 107 LAARNGHLEV 116

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 50.8 bits (123), Expect = 3e-08
 Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 43/130 (33%)

Query: 40  ALHIASQKGKCS-------------ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA 86
            LH+A++ G                A D +GR  LHLAA  GH++V++ L+ A  D    
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---- 60

Query: 87  PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEV 146
                         +NA D NG T LHLA  +  +E+           +K    + A +V
Sbjct: 61  --------------VNAKDKNGRTPLHLAARNGHLEV-----------VKLLLEAGA-DV 94

Query: 147 NAVNANGFTA 156
           NA + NG T 
Sbjct: 95  NAKDKNGRTP 104

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 43.1 bits (103), Expect = 1e-05
 Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 30/101 (29%)

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
           +GR  LHLAA  GH++V++ L+ A  D                  +NA D NG T LHLA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD------------------VNAKDKNGRTPLHLA 42

Query: 116 VADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
             +  +E+           +K    + A +VNA + NG T 
Sbjct: 43  ARNGHLEV-----------VKLLLEAGA-DVNAKDKNGRTP 71

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 40.8 bits (97), Expect = 8e-05
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 13/51 (25%)

Query: 40  ALHIASQKG-----KC--------SATDVDGRNALHLAAMEGHIDVLEELV 77
            LH+A++ G     K         +A D +GR  LHLAA  GH++V++ L+
Sbjct: 71  PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 55.2 bits (134), Expect = 7e-09
 Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 42/161 (26%)

Query: 9   AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDV 55
           +         +++ + Q   L  ++D    +ALH+A++  +              +  D 
Sbjct: 29  SEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN 88

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
            GR  LH A       V + L+R                   +  L+A   +G T L LA
Sbjct: 89  MGRTPLHAAVSADAQGVFQILIRN-----------------RATDLDARMHDGTTPLILA 131

Query: 116 VADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
                  +           ++    S A +VNAV+  G +A
Sbjct: 132 ARLAVEGM-----------LEDLINSHA-DVNAVDDLGKSA 160

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 54.8 bits (133), Expect = 7e-09
 Identities = 31/144 (21%), Positives = 42/144 (29%), Gaps = 56/144 (38%)

Query: 40  ALHIASQKGKCS---------------------------ATDVDGRNALHLAAMEGHIDV 72
            L IAS  G                               TD  G  ALHLAA     D 
Sbjct: 13  PLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDA 72

Query: 73  LEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKS 132
            + L+ A  DA                  N  D+ G T LH AV+     +         
Sbjct: 73  AKRLLEASADA------------------NIQDNMGRTPLHAAVSADAQGV--------- 105

Query: 133 RAIKFFTTSTAIEVNAVNANGFTA 156
              +    + A +++A   +G T 
Sbjct: 106 --FQILIRNRATDLDARMHDGTTP 127

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 50.9 bits (123), Expect = 2e-07
 Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 32/127 (25%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKC-------------SATDVD 56
           AA L  E  + +++    ++    D  KS ALH A+                     +  
Sbjct: 131 AARLAVEGMLEDLINSHADVNAVDDLGKS-ALHWAAAVNNVDAAVVLLKNGANKDMQNNR 189

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
               L LAA EG  +  + L+    +                   +  D        +A 
Sbjct: 190 EETPLFLAAREGSYETAKVLLDHFAN------------------RDITDHMDRLPRDIAQ 231

Query: 117 ADKQIEI 123
                +I
Sbjct: 232 ERMHHDI 238

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 49.0 bits (118), Expect = 7e-07
 Identities = 23/150 (15%), Positives = 42/150 (28%), Gaps = 47/150 (31%)

Query: 40  ALHIASQKGKCS-------------ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA 86
            L +A++                  A D  G++ALH AA   ++D    L++   +    
Sbjct: 127 PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---- 182

Query: 87  PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEV 146
                          +  ++   T L LA  +   E             K          
Sbjct: 183 --------------KDMQNNREETPLFLAAREGSYET-----------AKVL-LDHFANR 216

Query: 147 NAVNANGFTAWDILAQSKRDIKYWEIGELL 176
           +  +       DI  +      + +I  LL
Sbjct: 217 DITDHMDRLPRDIAQER----MHHDIVRLL 242

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 54.3 bits (132), Expect = 1e-08
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 42/156 (26%)

Query: 14  GHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNA 60
                +++ + Q   L  ++D    +ALH+A++  +              +  D  GR  
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 61  LHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQ 120
           LH A       V + L+R                   +  L+A   +G T L LA     
Sbjct: 62  LHAAVSADAQGVFQILIRN-----------------RATDLDARMHDGTTPLILAARLAV 104

Query: 121 IEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
             +           ++    ++  +VNAV+  G +A
Sbjct: 105 EGM-----------LEDL-INSHADVNAVDDLGKSA 128

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 53.2 bits (129), Expect = 2e-08
 Identities = 34/161 (21%), Positives = 50/161 (31%), Gaps = 45/161 (27%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG---------KCSATDV----- 55
           AA     D   + L +    A   D+   + LH A             +  ATD+     
Sbjct: 32  AARYSRSDAA-KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 90

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
           DG   L LAA      +LE+L+ +  D                  +NA DD G + LH A
Sbjct: 91  DGTTPLILAARLAVEGMLEDLINSHAD------------------VNAVDDLGKSALHWA 132

Query: 116 VADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
            A   ++                  + A   +  N    T 
Sbjct: 133 AAVNNVDA-----------AVVLLKNGA-NKDMQNNREETP 161

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 49.3 bits (119), Expect = 4e-07
 Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 32/127 (25%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDVD 56
           AA L  E  + +++    ++    D  KS ALH A+                     +  
Sbjct: 99  AARLAVEGMLEDLINSHADVNAVDDLGKS-ALHWAAAVNNVDAAVVLLKNGANKDMQNNR 157

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
               L LAA EG  +  + L+    +                   +  D        +A 
Sbjct: 158 EETPLFLAAREGSYETAKVLLDHFAN------------------RDITDHMDRLPRDIAQ 199

Query: 117 ADKQIEI 123
                +I
Sbjct: 200 ERMHHDI 206

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 52.0 bits (126), Expect = 1e-08
 Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 43/130 (33%)

Query: 40  ALHIASQKG-----KC--------SATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA 86
               A + G     K         + T   GR  LH AA  G +++LE L+    D    
Sbjct: 10  EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---- 65

Query: 87  PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEV 146
                         +NA D + +T L  AV +  +             +K   +  A + 
Sbjct: 66  --------------INAPDKHHITPLLSAVYEGHVSC-----------VKLLLSKGA-DK 99

Query: 147 NAVNANGFTA 156
                +G TA
Sbjct: 100 TVKGPDGLTA 109

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 50.1 bits (121), Expect = 5e-08
 Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 32/127 (25%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDVD 56
           A   G  D V + + +  ++ R         LH A+  G+               A D  
Sbjct: 14  ALKNGDLDEVKDYVAKGEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
               L  A  EGH+  ++ L+    D                        +G+T      
Sbjct: 73  HITPLLSAVYEGHVSCVKLLLSKGAD------------------KTVKGPDGLTAFEATD 114

Query: 117 ADKQIEI 123
                 +
Sbjct: 115 NQAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 47.8 bits (115), Expect = 3e-07
 Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 30/101 (29%)

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
                   A   G +D +++ V    D                  +N   + G   LH A
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGED------------------VNRTLEGGRKPLHYA 47

Query: 116 VADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
               Q+EI           ++F     A ++NA + +  T 
Sbjct: 48  ADCGQLEI-----------LEFLLLKGA-DINAPDKHHITP 76

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 14/78 (17%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDVD 56
           AA  G  + + E L  K       D    + L  A  +G  S                 D
Sbjct: 47  AADCGQLEIL-EFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD 105

Query: 57  GRNALHLAAMEGHIDVLE 74
           G  A      +    +L+
Sbjct: 106 GLTAFEATDNQAIKALLQ 123

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 53.2 bits (129), Expect = 1e-08
 Identities = 27/135 (20%), Positives = 42/135 (31%), Gaps = 41/135 (30%)

Query: 34  DSRKSSALHIASQKGK------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKP 81
           +    +AL +                      D  G   +H AA  G +D L+ L+  + 
Sbjct: 35  NGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94

Query: 82  DAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTS 141
           D                  +N  D+ G   LHLA  +  + +           ++F    
Sbjct: 95  D------------------VNIEDNEGNLPLHLAAKEGHLRV-----------VEFLVKH 125

Query: 142 TAIEVNAVNANGFTA 156
           TA  V   N  G TA
Sbjct: 126 TASNVGHRNHKGDTA 140

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 49.3 bits (119), Expect = 2e-07
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 30/103 (29%)

Query: 34  DSRKSSALHIASQKGKC-------------SATDVDGRNALHLAAMEGHIDVLEELVRAK 80
           D    + +H A++ G               +  D +G   LHLAA EGH+ V+E LV+  
Sbjct: 67  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH- 125

Query: 81  PDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI 123
                            +  +   +  G T   LA    + E+
Sbjct: 126 ----------------TASNVGHRNHKGDTACDLARLYGRNEV 152

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 41.6 bits (99), Expect = 1e-04
 Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 32/118 (27%)

Query: 56  DGRNALHLAAMEGHIDVLEEL------VRAKPDAASAPL----KSFLETREGSELL---- 101
              N L  AA  G ++ L  L      V A+       L        E    +  L    
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEI---ARRLLLRG 60

Query: 102 ---NANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
              +  D  G  ++H A     ++            ++      A +VN  +  G   
Sbjct: 61  ANPDLKDRTGFAVIHDAARAGFLDT-----------LQTLLEFQA-DVNIEDNEGNLP 106

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 38.9 bits (92), Expect = 6e-04
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 14/52 (26%)

Query: 40  ALHIASQKG---------KCSATDV-----DGRNALHLAAMEGHIDVLEELV 77
            LH+A+++G         K +A++V      G  A  LA + G  +V+  + 
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 29/185 (15%), Positives = 51/185 (27%), Gaps = 45/185 (24%)

Query: 9   AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKC-------------SATDV 55
            AAL G  + V + + +  + ++  +    +ALH A                   ++ D 
Sbjct: 27  DAALTGELEVVQQAVKEMNDPSQP-NEEGITALHNAICGANYSIVDFLITAGANVNSPDS 85

Query: 56  DGRNALHLAAMEGHIDVLEELVR--AKPDAASA-----PLKSFLETREGSELL------- 101
            G   LH AA      +   LV+  A   A +        +     REG           
Sbjct: 86  HGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV 145

Query: 102 ----NANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAW 157
                  +   +  L    A+   E+                   ++ V   +    T W
Sbjct: 146 EQSMGLMNSGAVYALWDYSAEFGDELSFRE-------------GESVTVLRRDGPEETDW 192

Query: 158 DILAQ 162
              A 
Sbjct: 193 WWAAL 197

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 25/151 (16%), Positives = 45/151 (29%), Gaps = 46/151 (30%)

Query: 40  ALHIASQKGKC-------------SATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA 86
            L  A+  G+              S  + +G  ALH A    +  +++ L+ A  +    
Sbjct: 24  LLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN---- 79

Query: 87  PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEV 146
                         +N+ D +G T LH A +     I                   A  +
Sbjct: 80  --------------VNSPDSHGWTPLHCAASCNDTVI-----------CMALVQHGA-AI 113

Query: 147 NAVNAN-GFTAWDILAQSKRDIKYWEIGELL 176
            A   + G TA++     +      +    L
Sbjct: 114 FATTLSDGATAFEKCDPYREGYA--DCATYL 142

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 24/145 (16%), Positives = 35/145 (24%), Gaps = 33/145 (22%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG--------------KCSATDV 55
           A    +   V+ ++     +    DS   + LH A+                   + T  
Sbjct: 61  AICGANYSIVDFLITAGANVNSP-DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS 119

Query: 56  DGRNALHLAAM--EGHIDVLEEL------VRAKPDAASAPLKSFLETREGSELL------ 101
           DG  A        EG+ D    L      +      A   L  +     G EL       
Sbjct: 120 DGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY-SAEFGDELSFREGES 178

Query: 102 ---NANDDNGMTILHLAVADKQIEI 123
                 D    T    A    Q   
Sbjct: 179 VTVLRRDGPEETDWWWAALHGQEGY 203

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 30/101 (29%)

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
           +    L  AA+ G ++V+++ V+   D                   +  ++ G+T LH A
Sbjct: 20  NPLVLLLDAALTGELEVVQQAVKEMND------------------PSQPNEEGITALHNA 61

Query: 116 VADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
           +      I           + F  T+ A  VN+ +++G+T 
Sbjct: 62  ICGANYSI-----------VDFLITAGA-NVNSPDSHGWTP 90

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 51/167 (30%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------------KC 50
           A +    +    +L    +   + D R ++ LH+A ++G                     
Sbjct: 52  AVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL 110

Query: 51  SATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDD-NGM 109
            AT+ +G   LHLA++ G++ ++E LV    D                  +NA +  NG 
Sbjct: 111 KATNYNGHTCLHLASIHGYLGIVELLVSLGAD------------------VNAQEPCNGR 152

Query: 110 TILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
           T LHLAV  +  ++           +       A +VN V   G++ 
Sbjct: 153 TALHLAVDLQNPDL-----------VSLLLKCGA-DVNRVTYQGYSP 187

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 25/140 (17%), Positives = 37/140 (26%), Gaps = 51/140 (36%)

Query: 39  SALHIASQKGKCS-----------------ATDVDGRNALHLAAMEGHIDVLEELVRAKP 81
           S LH+A    + +                   +   +  LHLA +    ++ E L+ A  
Sbjct: 10  SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC 69

Query: 82  DAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFT-- 139
           D                      D  G T LHLA     +             +   T  
Sbjct: 70  D------------------PELRDFRGNTPLHLACEQGCLAS-----------VGVLTQS 100

Query: 140 ---TSTAIEVNAVNANGFTA 156
                    + A N NG T 
Sbjct: 101 CTTPHLHSILKATNYNGHTC 120

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 14/72 (19%)

Query: 52  ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTI 111
               DG + LHLA +     +  E++R         +K      + +  LN  ++   T 
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQ--------VKG-----DLAF-LNFQNNLQQTP 48

Query: 112 LHLAVADKQIEI 123
           LHLAV   Q EI
Sbjct: 49  LHLAVITNQPEI 60

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 8/98 (8%), Positives = 17/98 (17%), Gaps = 31/98 (31%)

Query: 39  SALHIASQKGKCS-------------ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAAS 85
           +ALH+A                         G +   L        + ++L +   +   
Sbjct: 153 TALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN-- 210

Query: 86  APLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI 123
                                            +  E 
Sbjct: 211 ----------------LQMLPESEDEESYDTESEFTEF 232

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 51.6 bits (125), Expect = 1e-08
 Identities = 30/130 (23%), Positives = 44/130 (33%), Gaps = 43/130 (33%)

Query: 40  ALHIASQKG-------------KCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA 86
            LH A++ G               +A   DG   LHLAA  GH ++++ L+    D    
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD---- 67

Query: 87  PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEV 146
                         +NA   +G T  HLA  +   EI           +K      A +V
Sbjct: 68  --------------VNARSKDGNTPEHLAKKNGHHEI-----------VKLLDAKGA-DV 101

Query: 147 NAVNANGFTA 156
           NA +      
Sbjct: 102 NARSWGSSHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 47.4 bits (114), Expect = 4e-07
 Identities = 24/117 (20%), Positives = 36/117 (30%), Gaps = 32/117 (27%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDVD 56
           AA  GH + V + L  K           ++ LH+A++ G                A   D
Sbjct: 16  AAKNGHAEEV-KKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKD 74

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILH 113
           G    HLA   GH ++++ L     D                  +NA         H
Sbjct: 75  GNTPEHLAKKNGHHEIVKLLDAKGAD------------------VNARSWGSSHHHH 113

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 31/180 (17%), Positives = 59/180 (32%), Gaps = 46/180 (25%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKC-------------SATDVD 56
                     +E +     +  K +    + L  +S +G+              S  + +
Sbjct: 12  GKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDE 69

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
           G  ALH A   GH ++++ LV+   +                  +NA D +G T LH A 
Sbjct: 70  GITALHNAVCAGHTEIVKFLVQFGVN------------------VNAADSDGWTPLHCAA 111

Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELL 176
           +   +++            KF   S A  V A+  +         +   +  Y +  + L
Sbjct: 112 SCNNVQV-----------CKFLVESGA-AVFAMTYSDMQTAADKCEEMEE-GYTQCSQFL 158

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 44/130 (33%)

Query: 40  ALHIASQKG-------------KCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA 86
           +L    +               +           L  +++EG  D+++ ++    D    
Sbjct: 8   SLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEVDD---- 62

Query: 87  PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEV 146
                          +  +D G+T LH AV     EI           +KF        V
Sbjct: 63  --------------PSLPNDEGITALHNAVCAGHTEI-----------VKFLVQFGV-NV 96

Query: 147 NAVNANGFTA 156
           NA +++G+T 
Sbjct: 97  NAADSDGWTP 106

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 9/104 (8%), Positives = 21/104 (20%), Gaps = 34/104 (32%)

Query: 40  ALHIASQKG----------------KCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDA 83
            LH A+                     + +D+           EG+    + L   +   
Sbjct: 106 PLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK- 164

Query: 84  ASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITH 127
                            +   +   +  L         E+ +  
Sbjct: 165 -----------------MGIMNKGVIYALWDYEPQNDDELPMKE 191

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 50.4 bits (122), Expect = 2e-08
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 31/97 (31%)

Query: 40  ALHIASQKG-----KC--------SATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA 86
            LH+A++ G     K         +A D +GR  LHLAA  GH++V++ L+ A  D    
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---- 60

Query: 87  PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI 123
                         +NA D NG T LHLA  +  +E+
Sbjct: 61  --------------VNAKDKNGRTPLHLAARNGHLEV 83

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 45.8 bits (110), Expect = 8e-07
 Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 30/101 (29%)

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
           +GR  LHLAA  GH++V++ L+ A  D                  +NA D NG T LHLA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD------------------VNAKDKNGRTPLHLA 42

Query: 116 VADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
             +  +E+           +K    + A +VNA + NG T 
Sbjct: 43  ARNGHLEV-----------VKLLLEAGA-DVNAKDKNGRTP 71

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 20/84 (23%)

Query: 10 AALLGHEDFVNEILCQK---PELARKSDSRKSSALHIASQKGKCS-------------AT 53
          AA  GH + V ++L +           D    + LH+A++ G                A 
Sbjct: 9  AARNGHLEVV-KLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

Query: 54 DVDGRNALHLAAMEGHIDVLEELV 77
          D +GR  LHLAA  GH++V++ L+
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLL 88

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 53.6 bits (130), Expect = 2e-08
 Identities = 29/148 (19%), Positives = 44/148 (29%), Gaps = 49/148 (33%)

Query: 29  LARKSDSRKSSALHIASQKGKC-----------------SATDVDGRNALHLAAMEGHID 71
           +A ++D    + LHIA  +G                      +   +  LHLA +     
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 72  VLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYK 131
           V+  LV A                       A D +G T  HLA   +            
Sbjct: 61  VVRLLVTAGAS------------------PMALDRHGQTAAHLACEHRSPTC-------- 94

Query: 132 SRAIKFFTTSTAIE---VNAVNANGFTA 156
              ++    S A     + A N +G TA
Sbjct: 95  ---LRALLDSAAPGTLDLEARNYDGLTA 119

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 51.7 bits (125), Expect = 9e-08
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 31/127 (24%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVD 56
           A     ++ V  +L +  ++         S L  A +                 +A    
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS 182

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
           G +ALH A+  G + ++  LVR+  D                   +  + +  T L +A 
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSGAD------------------SSLKNCHNDTPLMVAR 224

Query: 117 ADKQIEI 123
           + + I+I
Sbjct: 225 SRRVIDI 231

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 32/183 (17%), Positives = 56/183 (30%), Gaps = 52/183 (28%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-----------------A 52
           A +      V  ++          D    +A H+A +    +                 A
Sbjct: 53  AVITTLPSVVRLLVTAGASPMAL-DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA 111

Query: 53  TDVDGRNALHLAAMEGHIDVLEELVR--AKPDAASA-----PL-----KSFLETREGSEL 100
            + DG  ALH+A      + ++ L+   A  DA        PL      + L      +L
Sbjct: 112 RNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM---VQL 168

Query: 101 L-------NANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANG 153
           L       NA   +G + LH A     + +           ++    S A + +  N + 
Sbjct: 169 LLQHGANVNAQMYSGSSALHSASGRGLLPL-----------VRTLVRSGA-DSSLKNCHN 216

Query: 154 FTA 156
            T 
Sbjct: 217 DTP 219

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 17/81 (20%), Positives = 24/81 (29%), Gaps = 14/81 (17%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKC-------------SATDVD 56
           A        V  +L     +  +  S  S ALH AS +G               S  +  
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQMYSGSS-ALHSASGRGLLPLVRTLVRSGADSSLKNCH 215

Query: 57  GRNALHLAAMEGHIDVLEELV 77
               L +A     ID+L    
Sbjct: 216 NDTPLMVARSRRVIDILRGKA 236

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 16/127 (12%), Positives = 38/127 (29%), Gaps = 35/127 (27%)

Query: 10  AALLGHEDFVNEILCQKPELARKS-------DSRKSSALHIASQKGKC------------ 50
            A     +   +++  + +    +       D  +++ L +A    +             
Sbjct: 132 IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD 191

Query: 51  -SATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGM 109
            +  +   R+ALH AA      ++  ++ +                     +   D NGM
Sbjct: 192 PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD---------------IEELDRNGM 236

Query: 110 TILHLAV 116
           T L +  
Sbjct: 237 TALMIVA 243

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 22/158 (13%), Positives = 48/158 (30%), Gaps = 34/158 (21%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQ-----------KGKCSATDVDGR 58
               G++    +      ++  + +      LH  +            +          R
Sbjct: 68  GYGNGNDFLG-DFNHTNLQIPTEPEPESPIKLHTEAAGSYAITEPITRESVNIIDPRHNR 126

Query: 59  NALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVAD 118
             LH  A     +  E+L+           K  +    G++ +NA D +  T L LAV  
Sbjct: 127 TVLHWIASNSSAEKSEDLI-------VHEAKECIA--AGAD-VNAMDCDENTPLMLAVLA 176

Query: 119 KQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
           ++  +           + +   + A +    N +  +A
Sbjct: 177 RRRRL-----------VAYLMKAGA-DPTIYNKSERSA 202

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 53.0 bits (128), Expect = 7e-08
 Identities = 33/174 (18%), Positives = 55/174 (31%), Gaps = 55/174 (31%)

Query: 9   AAALLGHEDFVNEILCQKPELAR--KSDSRKSSALHIASQKG------------------ 48
            AA       +  +L          + D    +AL I +                     
Sbjct: 205 QAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264

Query: 49  ------KCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLN 102
                 +  +    GR ALH AA   ++ +++ LV  K                GS   +
Sbjct: 265 DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK----------------GSN-KD 307

Query: 103 ANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
             D++G T + LA  + +IE+           + +     A  V AV+A   TA
Sbjct: 308 KQDEDGKTPIMLAAQEGRIEV-----------VMYLIQQGA-SVEAVDATDHTA 349

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 52.6 bits (127), Expect = 9e-08
 Identities = 27/174 (15%), Positives = 50/174 (28%), Gaps = 56/174 (32%)

Query: 6   LAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------- 51
           L   AA  G       I  +   +     +R  + LH  +                    
Sbjct: 98  LHTEAA--GSYAITEPITRESVNIIDPRHNR--TVLHWIASNSSAEKSEDLIVHEAKECI 153

Query: 52  -------ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNAN 104
                  A D D    L LA +     ++  L++A  D                      
Sbjct: 154 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD------------------PTIY 195

Query: 105 DDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAI--EVNAVNANGFTA 156
           + +  + LH A A++   +           + +   ST +  ++  ++ NG TA
Sbjct: 196 NKSERSALHQAAANRDFGM-----------MVYMLNSTKLKGDIEELDRNGMTA 238

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 26/138 (18%), Positives = 39/138 (28%), Gaps = 42/138 (30%)

Query: 10  AALLGHEDFVN----------EILCQKPELARKSDSRKSSALHIASQKGKCS-------- 51
            A     D V           ++             +  +ALH A+Q             
Sbjct: 242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE 301

Query: 52  ------ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNAND 105
                   D DG+  + LAA EG I+V+  L++                      + A D
Sbjct: 302 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS------------------VEAVD 343

Query: 106 DNGMTILHLAVADKQIEI 123
               T   LA A+    I
Sbjct: 344 ATDHTARQLAQANNHHNI 361

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 13/86 (15%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDVD 56
           AA + +   V  ++ +K     K D    + + +A+Q+G+               A D  
Sbjct: 286 AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDAT 345

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPD 82
              A  LA    H ++++   R +P+
Sbjct: 346 DHTARQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 20/137 (14%), Positives = 37/137 (27%), Gaps = 27/137 (19%)

Query: 40  ALHIASQKGKC----SATDVDGRNALHLAAMEGHIDVLEELVR--AKPDAA----SAPL- 88
           +L  AS  G      +                G+  + +        P          L 
Sbjct: 40  SLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLH 99

Query: 89  ---KSFLETREGSELL---NAN---DDNGMTILHLAVADKQIEIWITHITYKSRAIKFFT 139
                       +E +   + N     +  T+LH   ++   E     I       K   
Sbjct: 100 TEAAGSYAI---TEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLI---VHEAKECI 153

Query: 140 TSTAIEVNAVNANGFTA 156
            + A +VNA++ +  T 
Sbjct: 154 AAGA-DVNAMDCDENTP 169

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 27/99 (27%)

Query: 39  SALHIASQKGKCS--------------ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAA 84
           S L +A+++                       G  ALH+AA+  +++    L+ A P+  
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 85  SAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI 123
             P             + +    G T LH+AV ++ + +
Sbjct: 65  FEP-------------MTSELYEGQTALHIAVINQNVNL 90

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 29/187 (15%), Positives = 60/187 (32%), Gaps = 39/187 (20%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG------------------KCS 51
           AA       ++++L  +     +  +   +ALHIA+                       +
Sbjct: 10  AAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMT 69

Query: 52  ATDVDGRNALHLAAMEGHIDVLEELVR--AKPDAASAPLKSFLETREGSELLNANDDNGM 109
           +   +G+ ALH+A +  +++++  L+   A   A +                +     G 
Sbjct: 70  SELYEGQTALHIAVINQNVNLVRALLARGASVSARA-------TGSVFHYRPHNLIYYGE 122

Query: 110 TILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKY 169
             L  A      EI           ++      A ++ A ++ G T   IL         
Sbjct: 123 HPLSFAACVGSEEI-----------VRLLIEHGA-DIRAQDSLGNTVLHILILQPNKTFA 170

Query: 170 WEIGELL 176
            ++  LL
Sbjct: 171 CQMYNLL 177

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 14/103 (13%), Positives = 26/103 (25%), Gaps = 33/103 (32%)

Query: 40  ALHIASQKGKC-------------SATDVDGRNALHLAAMEGHIDVLEELVR------AK 80
            L  A+  G                A D  G   LH+  ++ +     ++          
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183

Query: 81  PDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI 123
               S                   ++ G+T   LA  +  I +
Sbjct: 184 DHLKSLE--------------LVPNNQGLTPFKLAGVEGNIVM 212

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 50.1 bits (121), Expect = 6e-08
 Identities = 23/127 (18%), Positives = 37/127 (29%), Gaps = 32/127 (25%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQ-----------KG-KCSATDVDG 57
           AA  G  + V ++L    +     +      + +               G + +  D   
Sbjct: 19  AAARGQVETVRQLLEAGADPNAL-NRFGRRPIQVMMMGSAQVAELLLLHGAEPNCADPAT 77

Query: 58  R-NALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
               +H AA EG +D L  L RA                     L+  D  G   + LA 
Sbjct: 78  LTRPVHDAAREGFLDTLVVLHRAGAR------------------LDVCDAWGRLPVDLAE 119

Query: 117 ADKQIEI 123
                +I
Sbjct: 120 EQGHRDI 126

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 45.5 bits (109), Expect = 3e-06
 Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 18/64 (28%)

Query: 52  ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTI 111
                    L  AA  G ++ + +L+ A  D                   NA +  G   
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGAD------------------PNALNRFGRRP 48

Query: 112 LHLA 115
           + + 
Sbjct: 49  IQVM 52

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 45.1 bits (108), Expect = 3e-06
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 13/86 (15%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATDVD 56
             ++G       +L    E      +  +  +H A+++G             +    D  
Sbjct: 51  VMMMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAW 110

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPD 82
           GR  + LA  +GH D+   L  A  D
Sbjct: 111 GRLPVDLAEEQGHRDIARYLHAATGD 136

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 20/132 (15%), Positives = 35/132 (26%), Gaps = 19/132 (14%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDVD 56
            A LG +  V  +     +L  +      +ALH+A+   +                 D  
Sbjct: 84  VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER 143

Query: 57  GRNALHLAAMEGHIDVLEELVRA-----KPDAASAPLKSFLETREGSELLNANDDNGMTI 111
           G  AL LA            ++           +       E  E  E +      G  +
Sbjct: 144 GLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDE-IVEKRGKGKDV 202

Query: 112 LHLAVADKQIEI 123
            +L       + 
Sbjct: 203 EYLVRWKDGGDC 214

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 25/152 (16%), Positives = 39/152 (25%), Gaps = 37/152 (24%)

Query: 2   TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS---------- 51
             ++  +     GH            ++     S   +    A++K              
Sbjct: 15  GAMEYLIEWKD-GHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLEDRD 69

Query: 52  --ATDVDGRNALHLAAMEGHIDVLEELV--RAKPDAASA-----PLKSFLETREGS---- 98
             A D +GR AL   A  G    +  L    A  D          L   +          
Sbjct: 70  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL--HMAAGYVRPEVV 127

Query: 99  ELL-------NANDDNGMTILHLAVADKQIEI 123
           E L          D+ G+T L LA    +   
Sbjct: 128 EALVELGADIEVEDERGLTALELAREILKTTP 159

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 29/105 (27%)

Query: 29  LARKSDSRKSSALHIASQKGKC--------SATDV--DGRNALHLAAMEGHIDVLEELVR 78
           +  ++    +    I  + G           A DV  +       AA +     L +L+ 
Sbjct: 7   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLL- 65

Query: 79  AKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI 123
                            E  + ++A D+NG T L         + 
Sbjct: 66  -----------------EDRD-VDAVDENGRTALLFVAGLGSDKC 92

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 25/162 (15%), Positives = 42/162 (25%), Gaps = 44/162 (27%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQ-----------KG-KCSATDVDG 57
           AA  G  + V  +L          +S     + +               G + +  D   
Sbjct: 19  AAARGRVEEVRALLEAGANPNAP-NSYGRRPIQVMMMGSARVAELLLLHGAEPNCADPAT 77

Query: 58  R-NALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
               +H AA EG +D L  L RA                     L+  D  G   + LA 
Sbjct: 78  LTRPVHDAAREGFLDTLVVLHRAGAR------------------LDVRDAWGRLPVDLAE 119

Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWD 158
                ++            ++   +        N     A +
Sbjct: 120 ELGHRDV-----------ARYLRAAAG-GTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 19/133 (14%), Positives = 35/133 (26%), Gaps = 37/133 (27%)

Query: 1   MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS--------- 51
              +Q+ +    +G       +L    E      +  +  +H A+++G            
Sbjct: 46  RRPIQVMM----MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG 101

Query: 52  ----ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDN 107
                 D  GR  + LA   GH DV   L  A                        ++  
Sbjct: 102 ARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG------------------TRGSNHA 143

Query: 108 GMTIL--HLAVAD 118
            +        + D
Sbjct: 144 RIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 18/65 (27%)

Query: 52  ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTI 111
           ++     + L  AA  G ++ +  L+ A  +                   NA +  G   
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRALLEAGAN------------------PNAPNSYGRRP 48

Query: 112 LHLAV 116
           + + +
Sbjct: 49  IQVMM 53

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 48.9 bits (118), Expect = 2e-07
 Identities = 32/130 (24%), Positives = 47/130 (36%), Gaps = 43/130 (33%)

Query: 40  ALHIASQKGKCS-------------ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA 86
            L  A++ G+               A D  G   L+LA   GH++++E L++   D    
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD---- 72

Query: 87  PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEV 146
                         +NA D  G T LHLA     +EI            +      A +V
Sbjct: 73  --------------VNAVDAIGFTPLHLAAFIGHLEI-----------AEVLLKHGA-DV 106

Query: 147 NAVNANGFTA 156
           NA +  G TA
Sbjct: 107 NAQDKFGKTA 116

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 47.4 bits (114), Expect = 5e-07
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 31/97 (31%)

Query: 40  ALHIASQKGKCS-------------ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA 86
            L++A+  G                A D  G   LHLAA  GH+++ E L++   D    
Sbjct: 50  PLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD---- 105

Query: 87  PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI 123
                         +NA D  G T   +++ +   ++
Sbjct: 106 --------------VNAQDKFGKTAFDISIGNGNEDL 128

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 38.5 bits (91), Expect = 7e-04
 Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 30/101 (29%)

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
           D    L  AA  G  D +  L+    D                  +NA D+ G+T L+LA
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGAD------------------VNAKDEYGLTPLYLA 54

Query: 116 VADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
            A   +EI           ++    + A +VNAV+A GFT 
Sbjct: 55  TAHGHLEI-----------VEVLLKNGA-DVNAVDAIGFTP 83

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 49.7 bits (120), Expect = 2e-07
 Identities = 24/136 (17%), Positives = 39/136 (28%), Gaps = 43/136 (31%)

Query: 34  DSRKSSALHIASQKGKCS-------------ATDVDGRNALHLAAMEGHIDVLEELVRAK 80
           DS   + L +A   G  +               D++G  AL  A     + + E+L+   
Sbjct: 32  DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG 91

Query: 81  PDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTT 140
            +                  +N  D +G T L  ++     E+             F   
Sbjct: 92  SN------------------VNTKDFSGKTPLMWSIIFGYSEM-----------SYFL-L 121

Query: 141 STAIEVNAVNANGFTA 156
                VN  N  G T 
Sbjct: 122 EHGANVNDRNLEGETP 137

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 47.0 bits (113), Expect = 2e-06
 Identities = 24/130 (18%), Positives = 37/130 (28%), Gaps = 37/130 (28%)

Query: 34  DSRKSSALHIASQKG-------KCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA 86
           D        I  +K          +  D   R  L +A M G  + +++LV         
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK---- 60

Query: 87  PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEV 146
                         L   D  G T L  AV + ++ I            +    S    V
Sbjct: 61  --------------LEDKDIEGSTALIWAVKNNRLGI-----------AEKL-LSKGSNV 94

Query: 147 NAVNANGFTA 156
           N  + +G T 
Sbjct: 95  NTKDFSGKTP 104

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 46.2 bits (111), Expect = 3e-06
 Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 31/103 (30%)

Query: 34  DSRKSSALHIASQKGK-------CS------ATDVDGRNALHLAAMEGHIDVLEELVRAK 80
           D    + L  +   G                  +++G   L +A+  G  +++++L+   
Sbjct: 98  DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157

Query: 81  PDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI 123
            D                  ++A D  G+T    A    + E+
Sbjct: 158 AD------------------ISARDLTGLTAEASARIFGRQEV 182

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 46.4 bits (111), Expect = 8e-07
 Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 35/127 (27%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDVD 56
            +   H    + ++ +   +     S     L  A++ G+               A D +
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
           G   LHLAA  GH++V++ L+ A  D                  + A D  G T   +++
Sbjct: 57  GSTPLHLAARNGHLEVVKLLLEAGAD------------------VXAQDKFGKTAFDISI 98

Query: 117 ADKQIEI 123
            +   ++
Sbjct: 99  DNGNEDL 105

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 47.9 bits (115), Expect = 8e-07
 Identities = 28/181 (15%), Positives = 49/181 (27%), Gaps = 51/181 (28%)

Query: 9   AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS------------ATDVD 56
                GH            ++     S   +    A++K                A D +
Sbjct: 20  IEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLEDRDVDAVDEN 75

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDN-GMTILHLA 115
           GR AL   A  G    +  L  A  D                  L+  D   G+T LH+A
Sbjct: 76  GRTALLFVAGLGSDKCVRLLAEAGAD------------------LDHRDMRGGLTALHMA 117

Query: 116 VADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGEL 175
               + E+           ++      A ++   +  G TA ++  +  +          
Sbjct: 118 AGYVRPEV-----------VEALVELGA-DIEVEDERGLTALELAREILKT----TPKGN 161

Query: 176 L 176
            
Sbjct: 162 P 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 15/82 (18%)

Query: 10  AALLGHEDFVNEILCQK-PELARKSDSRKSSALHIASQKG-------------KCSATDV 55
            A LG +  V  +L +   +L  +      +ALH+A+                     D 
Sbjct: 83  VAGLGSDKCV-RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE 141

Query: 56  DGRNALHLAAMEGHIDVLEELV 77
            G  AL LA            +
Sbjct: 142 RGLTALELAREILKTTPKGNPM 163

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 14/105 (13%), Positives = 29/105 (27%), Gaps = 26/105 (24%)

Query: 52  ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTI 111
             D  G   LH      ++++++ LV+   +                      D+ G + 
Sbjct: 126 PVDEHGNTPLHWLTSIANLELVKHLVKHGSN------------------RLYGDNMGESC 167

Query: 112 LHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
           L  AV         +   Y S   +         +   ++   T 
Sbjct: 168 LVKAVK--------SVNNYDSGTFEALLDYLYPCLILEDSMNRTI 204

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 27/202 (13%), Positives = 51/202 (25%), Gaps = 61/202 (30%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-----------------A 52
              + + + V  ++          D+   S L  A +                       
Sbjct: 138 LTSIANLELVKHLVKHGSNRLYG-DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL 196

Query: 53  TDVDGRNALHLAAMEGHID------------VLEELVR-------------------AKP 81
            D   R  LH   +   +             ++  +V+                      
Sbjct: 197 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG 256

Query: 82  DAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTS 141
           +   + L++       + +LNA D NG T L++A     I I           +      
Sbjct: 257 ERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISI-----------VDALLDY 305

Query: 142 TAIEVNAVNANGFTAWDILAQS 163
            A +    N +G    D  A  
Sbjct: 306 GA-DPFIANKSGLRPVDFGAGL 326

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 31/140 (22%), Positives = 42/140 (30%), Gaps = 43/140 (30%)

Query: 39  SALHIASQKGKCS-------------ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAAS 85
              ++A                     TD D R ALH A   GH +++E L++       
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--- 65

Query: 86  APLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIE 145
                          +N  DD G + LH+A +                 I          
Sbjct: 66  ---------------VNDKDDAGWSPLHIAAS------------AGXDEIVKALLVKGAH 98

Query: 146 VNAVNANGFTAWDILAQSKR 165
           VNAVN NG T     A   R
Sbjct: 99  VNAVNQNGCTPLHYAASKNR 118

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 36/185 (19%), Positives = 57/185 (30%), Gaps = 41/185 (22%)

Query: 9   AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDV 55
            A     ++    IL  K    R  D    +ALH A   G                  D 
Sbjct: 13  LAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71

Query: 56  DGRNALHLAAMEGHIDVLEEL------VRAKPDAASAPL--KSFLETREGSELL------ 101
            G + LH+AA  G  ++++ L      V A       PL   +     E + +L      
Sbjct: 72  AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131

Query: 102 -NANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDIL 160
            +A D    T +H A A   +++           +       A   N  +  G T   + 
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKM-----------VHILLFYKA-STNIQDTEGNTPLHLA 179

Query: 161 AQSKR 165
              +R
Sbjct: 180 CDEER 184

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 45.9 bits (109), Expect = 8e-06
 Identities = 32/200 (16%), Positives = 59/200 (29%), Gaps = 34/200 (17%)

Query: 2   TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNAL 61
           T L  A+     G  D +  IL     L     +        +  +         G+ AL
Sbjct: 48  TCLPKALLNLSAGRNDTI-PIL-----LDIAEKTGNMREFINSPFRDV----YYRGQTAL 97

Query: 62  HLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQI 121
           H+A        +E LV    D  +     F + ++           G   L LA    Q 
Sbjct: 98  HIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDE----GGYFYFGELPLSLAACTNQP 153

Query: 122 EIWITHITYKSRAIKFFTT--STAIEVNAVNANGFTAWDILAQSKRDIK-----YWEIGE 174
            I           + + T       ++   ++ G T    L     + +       ++ +
Sbjct: 154 HI-----------VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD 202

Query: 175 LL--RRARGNSAKDMHLPAN 192
           LL  + A+     ++    N
Sbjct: 203 LLLIKCAKLFPDTNLEALLN 222

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 31/100 (31%)

Query: 10  AALLGHEDFVNEILCQKPELA--RKSDSRKSSALHIASQKGKCS---------------- 51
           AA       V+ +     + A  R+ DSR ++ LH        +                
Sbjct: 147 AACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI 206

Query: 52  -------------ATDVDGRNALHLAAMEGHIDVLEELVR 78
                          + DG + L +AA  G I + + ++R
Sbjct: 207 KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 39.8 bits (93), Expect = 9e-04
 Identities = 14/100 (14%), Positives = 27/100 (27%), Gaps = 18/100 (18%)

Query: 40  ALHIASQKGKCS----------------ATDVDGRNALHLAAMEGHIDVLEELVRAKPDA 83
            L +A+   +                    D  G   LH            E  +     
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIAD--NTRENTKFVTKM 200

Query: 84  ASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI 123
               L    +    + L    +++G++ L +A    +I I
Sbjct: 201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI 240

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 20/92 (21%), Positives = 27/92 (29%), Gaps = 14/92 (15%)

Query: 2   TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK------------ 49
           T L LAV +        V + L Q      K   + S+ALH                   
Sbjct: 171 TALHLAVRSVDRTSLHIV-DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229

Query: 50  -CSATDVDGRNALHLAAMEGHIDVLEELVRAK 80
                +  G   L +A    H    E L +A 
Sbjct: 230 SIEIANESGETPLDIAKRLKHEHCEELLTQAL 261

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 17/109 (15%), Positives = 30/109 (27%), Gaps = 34/109 (31%)

Query: 31  RKSDSRKSSALHIASQKGK----------------CSATDVDGRNALHLAAMEGHIDVLE 74
                   +ALH+A +                          G  ALH   +  + + L+
Sbjct: 163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLK 222

Query: 75  ELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI 123
            L+R K                    +   +++G T L +A   K    
Sbjct: 223 LLLRGKAS------------------IEIANESGETPLDIAKRLKHEHC 253

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 32/165 (19%), Positives = 45/165 (27%), Gaps = 36/165 (21%)

Query: 23  LCQKPELARKSDSRKSSALHIA-----SQKGKCSATDVDGRNALHLAAMEGHIDVLEELV 77
                  A K+          A     ++K   +        ALHLA             
Sbjct: 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSV--------- 180

Query: 78  RAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKF 137
               D  S  +  FL    G+  L+     G T LH        E            +K 
Sbjct: 181 ----DRTSLHIVDFLVQNSGN--LDKQTGKGSTALHYCCLTDNAEC-----------LKL 223

Query: 138 FTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGN 182
                A  +   N +G T  DI  +     K+    ELL +A   
Sbjct: 224 LLRGKA-SIEIANESGETPLDIAKRL----KHEHCEELLTQALSG 263

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 43.8 bits (103), Expect = 5e-05
 Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 19/135 (14%)

Query: 6   LAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG--KCSATDVDGRNALHL 63
              AA   GH + +N +L     LA  ++  +             +      +  +A  L
Sbjct: 202 FRWAAVGRGHHNVINFLLDCPVMLA-YAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKL 260

Query: 64  AAMEGHIDVLEELVRAKP-----DAASA----------PLKSFLETREGSELLNANDDNG 108
           +  +G  D++ +    +      +               L S    +  +        + 
Sbjct: 261 SNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP-TATIPGDA 319

Query: 109 MTILHLAVADKQIEI 123
             +L LA+       
Sbjct: 320 NELLRLALRLGNQGA 334

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 24/169 (14%), Positives = 41/169 (24%), Gaps = 32/169 (18%)

Query: 45  SQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNAN 104
           +          +   A  LAA  GH+ VL  L    P    A                  
Sbjct: 116 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA----------------MI 159

Query: 105 DDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNA-VNANGFTAWDILAQS 163
                    LA  +  + +           +         E  A + A  + A+   A  
Sbjct: 160 QAENYHAFRLAAENGHLHV-----------LNRLCELAPTEATAMIQAENYYAFRWAAVG 208

Query: 164 K---RDIKY-WEIGELLRRARGNSAKDMHLPANELAVTQTNSLTSHENN 208
           +     I +  +   +L  A  +  +      N       N L    + 
Sbjct: 209 RGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDA 257

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 43.4 bits (102), Expect = 7e-05
 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 34/114 (29%)

Query: 26  KPELARKSDSRKSSALHIASQKGKCS----------------ATDVDGRNALHLAAMEGH 69
           +P     + + +   LH+A +    +                A   DG  ALH AA+   
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQ 238

Query: 70  IDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI 123
            D L+ L++ +                    +   ++ G T L +A      E 
Sbjct: 239 PDCLKLLLKGRAL------------------VGTVNEAGETALDIARKKHHKEC 274

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	383
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.95
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.95
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.95
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.95
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.95
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.95
2rfa_A	232	Transient receptor potential cation channel subfa	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.94
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.94
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.94
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.94
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.94
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.94
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.94
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
2rfa_A	232	Transient receptor potential cation channel subfa	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.94
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.94
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.94
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
2pnn_A	273	Transient receptor potential cation channel subfa	99.93
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.93
2etb_A	256	Transient receptor potential cation channel subfam	99.93
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.93
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.93
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.93
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.93
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.93
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.93
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.92
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.92
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.92
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.92
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.92
2etb_A	256	Transient receptor potential cation channel subfam	99.92
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.92
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.92
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.91
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.91
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.91
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.91
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.91
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
2pnn_A	273	Transient receptor potential cation channel subfa	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.9
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.9
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.9
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.89
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.88
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.88
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.87
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.87
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.87
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.87
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.86
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.85
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.85
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.84
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.84
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.83
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.83
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.82
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.8
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.79
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.79
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.79
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.79
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.78
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.77
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.77
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.75
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.74
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.74
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.73
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.73
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.71
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.7
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.69
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.68
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.66
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.62
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.62
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.52

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=2.9e-31  Score=224.68  Aligned_cols=143  Identities=32%  Similarity=0.461  Sum_probs=132.2

Q ss_pred             hHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcCC
Q 038344            3 ILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEGH   69 (383)
Q Consensus         3 pLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g~   69 (383)
                      +|+.|   |..|+.++|+.|++.|+++ +.+|.+|+||||+|+..++             ++.+|.+|+||||+|+++|+
T Consensus         7 ~L~~A---a~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            7 RLIEA---AENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHH---HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHH---HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCC
Confidence            56666   5699999999999999998 8899999999999999998             67889999999999999999


Q ss_pred             HHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccccc
Q 038344           70 IDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAV  149 (383)
Q Consensus        70 ~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~  149 (383)
                      .+++++|+++|++                  +|.+|.+|+||||+|+..|+.++           +++|++. |+|++.+
T Consensus        83 ~~~v~~Ll~~gad------------------vn~~d~~G~TpLh~A~~~g~~~~-----------v~~Ll~~-gad~~~~  132 (169)
T 4gpm_A           83 KEVVKLLISKGAD------------------VNAKDSDGRTPLHHAAENGHKEV-----------VKLLISK-GADVNTS  132 (169)
T ss_dssp             HHHHHHHHHTTCC------------------TTCCCTTSCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTTCC
T ss_pred             HHHHHHHHHCcCC------------------CCCCCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-CCCcccc
Confidence            9999999999988                  89999999999999999999999           9999996 9999999


Q ss_pred             ccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCC
Q 038344          150 NANGFTAWDILAQSKRDIKYWEIGELLRRARGNS  183 (383)
Q Consensus       150 n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~  183 (383)
                      |.+|+||||+|+.    .++.+++++|+++||+.
T Consensus       133 d~~G~TpL~~A~~----~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A          133 DSDGRTPLDLARE----HGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             CTTSCCHHHHHHH----TTCHHHHHHHHTC----
T ss_pred             CCCCCCHHHHHHH----cCCHHHHHHHHHCCCCc
Confidence            9999999999999    88999999999999987

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.95  E-value=3.6e-27  Score=207.87  Aligned_cols=161  Identities=20%  Similarity=0.182  Sum_probs=115.2

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC--------------ccccCCCCCcHHHHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------CSATDVDGRNALHLAAM   66 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~--------------~~~~d~~G~tpLh~A~~   66 (383)
                      +||||+|+   ..|+.+++++|++.++++ +..|..|+||||+|+..|+              ++..|.+|.||||+|+.
T Consensus        26 ~t~L~~A~---~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  101 (223)
T 2f8y_A           26 ETALHLAA---RYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR  101 (223)
T ss_dssp             CCHHHHHH---HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHH
T ss_pred             CchHHHHH---HcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHH
Confidence            58999995   499999999999999988 7889999999999999998              45668899999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCch------------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhh
Q 038344           67 EGHIDVLEELVRAKPDAASA------------------PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHI  128 (383)
Q Consensus        67 ~g~~~iv~~Ll~~~~~~~~~------------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l  128 (383)
                      .|+.+++++|++++++....                  .+++|++   .+.+++.+|.+|+||||+|+..|+.++     
T Consensus       102 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~---~g~~~~~~~~~g~t~L~~A~~~~~~~~-----  173 (223)
T 2f8y_A          102 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK---NGANKDMQNNREETPLFLAAREGSYET-----  173 (223)
T ss_dssp             HTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH---TTCCTTCCCTTCCCHHHHHHHHTCHHH-----
T ss_pred             hCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHH---cCCCCCCcCCCCcCHHHHHHHcCCHHH-----
Confidence            99999999999998874321                  2333333   344455555555555555555555555     


Q ss_pred             hchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          129 TYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       129 ~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                            +++|++. |++++.+|..|.||+|+|+.    .++.+++++|+++|+...
T Consensus       174 ------v~~Ll~~-ga~~~~~~~~g~t~l~~A~~----~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          174 ------AKVLLDH-FANRDITDHMDRLPRDIAQE----RMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             ------HHHHHHT-TCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCSSC
T ss_pred             ------HHHHHHc-CCCCccccccCCCHHHHHHH----hcchHHHHHHHHcCCCcc
Confidence                  5555553 55555555555555555555    455555555555555543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=9.5e-28  Score=203.16  Aligned_cols=147  Identities=22%  Similarity=0.262  Sum_probs=138.0

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      .||||.|+   ..|+.++++.|++.+++..+..|..|+||||+|+..|+             ++.+|.+|.||||+|+..
T Consensus         3 ~~~L~~A~---~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   79 (172)
T 3v30_A            3 SLSIHQLA---AQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG   79 (172)
T ss_dssp             -CCHHHHH---HTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred             hhhHHHHH---HcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC
Confidence            48999995   59999999999999999779999999999999999999             677889999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccc
Q 038344           68 GHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVN  147 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~  147 (383)
                      |+.+++++|+++|++                  ++.+|.+|+||||+|+..|+.++           +++|++. |++++
T Consensus        80 ~~~~~v~~Ll~~g~~------------------~~~~~~~g~t~L~~A~~~~~~~~-----------v~~Ll~~-ga~~~  129 (172)
T 3v30_A           80 GYTDIVGLLLERDVD------------------INIYDWNGGTPLLYAVRGNHVKC-----------VEALLAR-GADLT  129 (172)
T ss_dssp             TCHHHHHHHHTTTCC------------------TTCCCTTSCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTT
T ss_pred             CCHHHHHHHHHcCCC------------------CCCCCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-CCCcc
Confidence            999999999999887                  89999999999999999999999           9999996 99999


Q ss_pred             ccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          148 AVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       148 ~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      .+|.+|.||||+|+.    .++.+++++|+++|++..
T Consensus       130 ~~~~~g~t~l~~A~~----~~~~~~~~~L~~~~~~~~  162 (172)
T 3v30_A          130 TEADSGYTPMDLAVA----LGYRKVQQVIENHILKLF  162 (172)
T ss_dssp             CCCTTSCCHHHHHHH----HTCHHHHHHHHHHHHHHS
T ss_pred             ccCCCCCCHHHHHHH----hCcHHHHHHHHHHHHHHh
Confidence            999999999999999    889999999999998764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=8.2e-28  Score=201.30  Aligned_cols=142  Identities=23%  Similarity=0.328  Sum_probs=131.7

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEG   68 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g   68 (383)
                      ||||.|+   ..|+.++++.|++.++++ +..|..|+||||+|+. |+             ++.+|.+|.||||+|+..|
T Consensus         7 ~~L~~A~---~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            7 NELASAA---ARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             HHHHHHH---HHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             hHHHHHH---HcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            7999995   499999999999999988 8889999999999998 77             6678899999999999999


Q ss_pred             CHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccc-cc
Q 038344           69 HIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIE-VN  147 (383)
Q Consensus        69 ~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d-~~  147 (383)
                      +.+++++|+++|++                  +|.+|.+|+||||+|+..|+.++           +++|++. |++ ++
T Consensus        82 ~~~~v~~Ll~~g~~------------------~~~~~~~g~t~L~~A~~~~~~~~-----------v~~Ll~~-g~~~~~  131 (162)
T 1ihb_A           82 FLDTLQTLLEFQAD------------------VNIEDNEGNLPLHLAAKEGHLRV-----------VEFLVKH-TASNVG  131 (162)
T ss_dssp             CHHHHHHHHHTTCC------------------TTCCCTTSCCHHHHHHHTTCHHH-----------HHHHHHH-SCCCTT
T ss_pred             CHHHHHHHHHcCCC------------------CCCcCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-cCCCCC
Confidence            99999999999887                  89999999999999999999999           9999997 887 69


Q ss_pred             ccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCC
Q 038344          148 AVNANGFTAWDILAQSKRDIKYWEIGELLRRARGN  182 (383)
Q Consensus       148 ~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~  182 (383)
                      ..|..|.||||+|+.    .++.+++++|+++||+
T Consensus       132 ~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          132 HRNHKGDTACDLARL----YGRNEVVSLMQANGAG  162 (162)
T ss_dssp             CCCTTSCCHHHHHHH----TTCHHHHHHHHHTC--
T ss_pred             CcCCCCCcHHHHHHH----cCCHHHHHHHHHhCCC
Confidence            999999999999999    8899999999999985

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=1.6e-27  Score=200.73  Aligned_cols=146  Identities=18%  Similarity=0.242  Sum_probs=136.9

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      .||||.|+   ..|+.++++.|++.++++ +..|..|+||||+|+..|+             ++..|.+|.||||+|+..
T Consensus         4 ~t~L~~A~---~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            4 SLSVHQLA---AQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSK   79 (167)
T ss_dssp             CCCHHHHH---HTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cchHHHHH---HCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence            59999995   599999999999999887 8889999999999999998             567889999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccc
Q 038344           68 GHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVN  147 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~  147 (383)
                      |+.+++++|+++|++                  ++.+|.+|+||||+|+..|+.++           +++|++. |++++
T Consensus        80 ~~~~~v~~Ll~~g~~------------------~~~~~~~g~t~L~~A~~~~~~~~-----------v~~Ll~~-g~~~~  129 (167)
T 3v31_A           80 GYTDIVKMLLDCGVD------------------VNEYDWNGGTPLLYAVHGNHVKC-----------VKMLLES-GADPT  129 (167)
T ss_dssp             TCHHHHHHHHHHTCC------------------TTCCCTTSCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTT
T ss_pred             CCHHHHHHHHHCCCC------------------CCcCCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-CCCCC
Confidence            999999999999888                  89999999999999999999999           9999996 99999


Q ss_pred             ccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          148 AVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       148 ~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      ..|.+|.||+|+|+.    .++.+++++|++++++..
T Consensus       130 ~~~~~g~t~l~~A~~----~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          130 IETDSGYNSMDLAVA----LGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             CCCTTSCCHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred             CcCCCCCCHHHHHHH----cCcHHHHHHHHHHHHHHH
Confidence            999999999999999    889999999999987653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.95  E-value=2.6e-27  Score=215.94  Aligned_cols=163  Identities=23%  Similarity=0.251  Sum_probs=136.3

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcc--cccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPEL--ARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAA   65 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~   65 (383)
                      +||||+|+.   .|+.+++++|++.+++.  .+.+|..|+||||+|+..|+             ++.+|.+|+||||+|+
T Consensus        10 ~t~L~~A~~---~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~   86 (282)
T 1oy3_D           10 DTALHLAVI---HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLAC   86 (282)
T ss_dssp             CCHHHHHHH---TTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHT
T ss_pred             CcHHHHHHH---cCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            589999954   89999999999888762  47888999999999999988             5677888999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCC-----------------------------------------------------ch------
Q 038344           66 MEGHIDVLEELVRAKPDAA-----------------------------------------------------SA------   86 (383)
Q Consensus        66 ~~g~~~iv~~Ll~~~~~~~-----------------------------------------------------~~------   86 (383)
                      ..|+.+++++|++++++..                                                     .+      
T Consensus        87 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~  166 (282)
T 1oy3_D           87 RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAV  166 (282)
T ss_dssp             TTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHH
T ss_pred             HcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHH
Confidence            9999999999998775410                                                     01      


Q ss_pred             ------HHHHHhhccCCcccccCCCCC-CCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHH
Q 038344           87 ------PLKSFLETREGSELLNANDDN-GMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI  159 (383)
Q Consensus        87 ------~l~~l~~~~~~~~~~n~~d~~-g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~  159 (383)
                            .+++|++   .+..++.++.. |+||||+|+..|+.++           +++|++. |++++.+|..|+||||+
T Consensus       167 ~~g~~~~v~~Ll~---~g~~~~~~~~~~g~tpL~~A~~~~~~~~-----------v~~Ll~~-gad~~~~d~~g~tpL~~  231 (282)
T 1oy3_D          167 IHKDAEMVRLLRD---AGADLNKPEPTCGRTPLHLAVEAQAASV-----------LELLLKA-GADPTARMYGGRTPLGS  231 (282)
T ss_dssp             HTTCHHHHHHHHH---HTCCTTCCCTTTCCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTTCCCTTSCCHHHH
T ss_pred             HcCCHHHHHHHHH---cCCCCCCCCCCCCcCHHHHHHHcCCHHH-----------HHHHHHc-CCCCcccccCCCCHHHH
Confidence                  3445554   56678888854 9999999999999999           9999996 99999999999999999


Q ss_pred             HHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          160 LAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       160 A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      |+.    .++.+++++|+++|+++..
T Consensus       232 A~~----~~~~~~v~~Ll~~ga~~~~  253 (282)
T 1oy3_D          232 ALL----RPNPILARLLRAHGAPEPE  253 (282)
T ss_dssp             HHT----SSCHHHHHHHHHTTCCCCC
T ss_pred             HHH----cCCcHHHHHHHHcCCCcCc
Confidence            999    7889999999999999854

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.95  E-value=1.1e-26  Score=205.40  Aligned_cols=162  Identities=20%  Similarity=0.186  Sum_probs=140.6

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC---------------ccc-cCCCCCcHHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK---------------CSA-TDVDGRNALHLA   64 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~---------------~~~-~d~~G~tpLh~A   64 (383)
                      .||||.|+.   .|+.++++.|++.+++..+..|.+|+||||+|+..|+               .+. .|..|.||||+|
T Consensus         3 ~t~L~~A~~---~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A   79 (228)
T 2dzn_A            3 NYPLHQACM---ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA   79 (228)
T ss_dssp             CCHHHHHHH---TTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred             ccHHHHHHH---hCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence            599999954   9999999999999999877789999999999999998               223 678999999999


Q ss_pred             HHcCCHHHHHHHHHcC--CCCCch------------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHH
Q 038344           65 AMEGHIDVLEELVRAK--PDAASA------------------PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIW  124 (383)
Q Consensus        65 ~~~g~~~iv~~Ll~~~--~~~~~~------------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~  124 (383)
                      +..|+.+++++|+++|  ++....                  .+++|++   .+.+++.+|.+|+||||+|+..|+.++ 
T Consensus        80 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~---~g~~~~~~~~~g~t~L~~A~~~~~~~~-  155 (228)
T 2dzn_A           80 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE---NGASVRIKDKFNQIPLHRAASVGSLKL-  155 (228)
T ss_dssp             HHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH---TTCCSCCCCTTSCCHHHHHHHTTCHHH-
T ss_pred             HHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHH---cCCCccccCCCCCCHHHHHHHcCCHHH-
Confidence            9999999999999988  543321                  4455555   577889999999999999999999999 


Q ss_pred             HHhhhchhhHHHHhhhccc-ccccccccCCCCHHHHHHhccCCcchhhHHHHHH-HhcCCCC
Q 038344          125 ITHITYKSRAIKFFTTSTA-IEVNAVNANGFTAWDILAQSKRDIKYWEIGELLR-RARGNSA  184 (383)
Q Consensus       125 ~~~l~~~~~~v~~Ll~~~g-~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~-~~ga~~~  184 (383)
                                +++|++. | ++++.+|.+|+||||+|+.    .++.+++++|+ ++|+++.
T Consensus       156 ----------v~~Ll~~-g~~~~~~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~~ga~~~  202 (228)
T 2dzn_A          156 ----------IELLCGL-GKSAVNWQDKQGWTPLFHALA----EGHGDAAVLLVEKYGAEYD  202 (228)
T ss_dssp             ----------HHHHHTT-TCCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHCCCSC
T ss_pred             ----------HHHHHhc-CcccccCcCCCCCCHHHHHHH----cCCHHHHHHHHHhcCCCCC
Confidence                      9999986 6 9999999999999999999    78889999999 8899874

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.95  E-value=2.9e-27  Score=215.30  Aligned_cols=162  Identities=24%  Similarity=0.239  Sum_probs=125.8

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcc-------cccCCCCCCcHHHHHHHcCC--------------ccccCCCCCcH
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPEL-------ARKSDSRKSSALHIASQKGK--------------CSATDVDGRNA   60 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~-------~~~~d~~g~TpLh~Aa~~g~--------------~~~~d~~G~tp   60 (383)
                      |||+.|+   ..|+.++|++|++.+++.       .+..|..|.||||.|+..++              ++.+|.+|+||
T Consensus        13 ~~L~~A~---~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~Tp   89 (269)
T 4b93_B           13 EKLLRAV---ADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSP   89 (269)
T ss_dssp             HHHHHHH---HTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCH
T ss_pred             hHHHHHH---HcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            6899985   599999999999988753       35567889999999998765              67789999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCch------------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChh
Q 038344           61 LHLAAMEGHIDVLEELVRAKPDAASA------------------PLKSFLETREGSELLNANDDNGMTILHLAVADKQIE  122 (383)
Q Consensus        61 Lh~A~~~g~~~iv~~Ll~~~~~~~~~------------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~  122 (383)
                      ||+|+..|+.+++++|++.+++....                  .+++|++   .+.++|.+|.+|+||||+|+..|+.+
T Consensus        90 Lh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~---~g~~~n~~d~~g~TpL~~A~~~g~~~  166 (269)
T 4b93_B           90 LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD---SNAKPNKKDLSGNTPLIYACSGGHHE  166 (269)
T ss_dssp             HHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH---TTCCSCCCCTTCCCHHHHHHHTTCGG
T ss_pred             HHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHH---CCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence            99999999999999999999876533                  4566665   67789999999999999999999999


Q ss_pred             HHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          123 IWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       123 ~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      +           +++|++. |+|+|..|..|.||||+|+.    .++.+++++|+++|++++.
T Consensus       167 ~-----------v~~Ll~~-gadvn~~~~~g~t~Lh~A~~----~g~~~~v~~Ll~~Gad~~~  213 (269)
T 4b93_B          167 L-----------VALLLQH-GASINASNNKGNTALHEAVI----EKHVFVVELLLLHGASVQV  213 (269)
T ss_dssp             G-----------HHHHHHT-TCCTTCBCTTSCBHHHHHHH----TTCHHHHHHHHHTTCCSCC
T ss_pred             H-----------HHHHHHC-CCCCCccccCCCcHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence            9           9999996 99999999999999999999    8899999999999999854

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=4.3e-27  Score=198.78  Aligned_cols=141  Identities=31%  Similarity=0.449  Sum_probs=132.2

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEG   68 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g   68 (383)
                      ||||.|+   ..|+.+++++|++.++++ +..|.+|+||||+|+..|+             ++..|.+|.||||+|+..|
T Consensus        16 ~~l~~A~---~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   91 (169)
T 2y1l_E           16 KKLLEAA---RAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG   91 (169)
T ss_dssp             HHHHHHH---HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             chHHHHH---HcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            6889985   599999999999999998 8889999999999999998             5678889999999999999


Q ss_pred             CHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccc
Q 038344           69 HIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNA  148 (383)
Q Consensus        69 ~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~  148 (383)
                      +.+++++|+++|++                  ++.+|.+|+||||+|+..|+.++           +++|++. |++++.
T Consensus        92 ~~~~~~~Ll~~g~~------------------~~~~~~~g~t~L~~A~~~~~~~~-----------v~~Ll~~-g~~~~~  141 (169)
T 2y1l_E           92 HLEIVEVLLKNGAD------------------VNANDMEGHTPLHLAAMFGHLEI-----------VEVLLKN-GADVNA  141 (169)
T ss_dssp             CHHHHHHHHHTTCC------------------TTCCCTTSCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTTC
T ss_pred             CHHHHHHHHHcCCC------------------CCCCCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-CCCCCC
Confidence            99999999999888                  88999999999999999999999           9999996 999999


Q ss_pred             cccCCCCHHHHHHhccCCcchhhHHHHHHHhc
Q 038344          149 VNANGFTAWDILAQSKRDIKYWEIGELLRRAR  180 (383)
Q Consensus       149 ~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~g  180 (383)
                      +|..|.||+|+|+.    .++.+++++|++.|
T Consensus       142 ~~~~g~t~l~~A~~----~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          142 QDKFGKTAFDISID----NGNEDLAEILQKLN  169 (169)
T ss_dssp             CCTTSCCHHHHHHH----TTCHHHHHHHHTC-
T ss_pred             cCCCCCCHHHHHHH----hCCHHHHHHHHHcC
Confidence            99999999999999    88999999999876

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=2.3e-27  Score=204.51  Aligned_cols=142  Identities=22%  Similarity=0.249  Sum_probs=134.1

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||+|+.   .|+.+++++|++.++++ +..|..|+||||+|+..|+             ++.+|.+|.||||+|+..
T Consensus        36 ~t~L~~A~~---~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  111 (192)
T 2rfm_A           36 RTPLMVACM---LGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIF  111 (192)
T ss_dssp             CCHHHHHHH---HTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCHHHHHHH---cCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence            599999955   89999999999999988 7889999999999999998             667889999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccc
Q 038344           68 GHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVN  147 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~  147 (383)
                      |+.+++++|+++|++                  ++.+|.+|+||||+|+..|+.++           +++|++. |++++
T Consensus       112 ~~~~~v~~Ll~~g~~------------------~~~~~~~g~t~L~~A~~~~~~~~-----------v~~Ll~~-ga~~~  161 (192)
T 2rfm_A          112 GYSEMSYFLLEHGAN------------------VNDRNLEGETPLIVASKYGRSEI-----------VKKLLEL-GADIS  161 (192)
T ss_dssp             TCHHHHHHHHHTTCC------------------SSCCCTTCCCHHHHHHHHTCHHH-----------HHHHHHT-TCCTT
T ss_pred             CCHHHHHHHHHCCCC------------------CCCCCCCCCCHHHHHHHcCCHHH-----------HHHHHHC-CCCCC
Confidence            999999999999888                  89999999999999999999999           9999996 99999


Q ss_pred             ccccCCCCHHHHHHhccCCcchhhHHHHHHHhc
Q 038344          148 AVNANGFTAWDILAQSKRDIKYWEIGELLRRAR  180 (383)
Q Consensus       148 ~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~g  180 (383)
                      .+|..|.||+|+|+.    .++.+++++|+++|
T Consensus       162 ~~~~~g~t~l~~A~~----~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          162 ARDLTGLTAEASARI----FGRQEVIKIFTEVR  190 (192)
T ss_dssp             CBCTTSCBHHHHHHH----TTCHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHH----hCcHHHHHHHHhcc
Confidence            999999999999999    88999999999876

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.95  E-value=4.6e-27  Score=211.80  Aligned_cols=147  Identities=24%  Similarity=0.249  Sum_probs=133.8

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC--------------ccccCCCCCcHHHHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------CSATDVDGRNALHLAAM   66 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~--------------~~~~d~~G~tpLh~A~~   66 (383)
                      +||||+|+   ..|+.++++.|++.|+++ +..|..|+||||+|+..|+              ++.+|.+|.||||+|+.
T Consensus        58 ~t~L~~A~---~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  133 (253)
T 1yyh_A           58 ETALHLAA---RYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR  133 (253)
T ss_dssp             CCHHHHHH---HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH
T ss_pred             CcHHHHHH---HcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHH
Confidence            58999995   489999999999999888 7888999999999999888              45677889999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccc
Q 038344           67 EGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEV  146 (383)
Q Consensus        67 ~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~  146 (383)
                      .|+.+++++|+++|++                  +|.+|.+|+||||+|+..|+.++           +++|++. |+++
T Consensus       134 ~~~~~~v~~Ll~~g~~------------------~~~~d~~g~t~L~~A~~~~~~~~-----------v~~Ll~~-ga~~  183 (253)
T 1yyh_A          134 LAVEGMLEDLINSHAD------------------VNAVDDLGKSALHWAAAVNNVDA-----------AVVLLKN-GANK  183 (253)
T ss_dssp             HTCSSHHHHHHHTTCC------------------TTCBCTTSCBHHHHHHHHTCHHH-----------HHHHHHT-TCCT
T ss_pred             cChHHHHHHHHHcCCC------------------CCCcCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-CCCC
Confidence            9999999999998887                  89999999999999999999999           9999996 9999


Q ss_pred             cccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          147 NAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       147 ~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      +.+|..|.||||+|+.    .++.+++++|+++|+++..
T Consensus       184 ~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~~  218 (253)
T 1yyh_A          184 DMQNNREETPLFLAAR----EGSYETAKVLLDHFANRDI  218 (253)
T ss_dssp             TCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             CCcCCCCCCHHHHHHH----CCCHHHHHHHHHcCCCccc
Confidence            9999999999999999    8889999999999998753

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.95  E-value=6.2e-27  Score=219.74  Aligned_cols=113  Identities=27%  Similarity=0.376  Sum_probs=94.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCch----------------------HHHHHhhccCCcccccCCCCCCCc
Q 038344           54 DVDGRNALHLAAMEGHIDVLEELVR-AKPDAASA----------------------PLKSFLETREGSELLNANDDNGMT  110 (383)
Q Consensus        54 d~~G~tpLh~A~~~g~~~iv~~Ll~-~~~~~~~~----------------------~l~~l~~~~~~~~~~n~~d~~g~T  110 (383)
                      +..|.||||+|+++|+.+++++|++ .|++....                      .+++|++   .++++|.+|.+|+|
T Consensus       165 ~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~---~gad~n~~d~~g~t  241 (337)
T 4g8k_A          165 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD---HGADVNVRGERGKT  241 (337)
T ss_dssp             TTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHH---TTCCTTCCCGGGCC
T ss_pred             cCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHH---CCCCCCCcCCCCCC
Confidence            4567788888888888888888885 35554321                      2344444   67889999999999


Q ss_pred             HHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          111 ILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       111 pLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      |||+|+..|+.++           ++.|++..|+++|.+|.+|+||||+|+.    .++.+++++|+++||+++
T Consensus       242 ~L~~a~~~~~~~~-----------v~~Ll~~~~~~vn~~d~~G~TpL~~A~~----~g~~~iv~~Ll~~GAd~n  300 (337)
T 4g8k_A          242 PLILAVEKKHLGL-----------VQRLLEQEHIEINDTDSDGKTALLLAVE----LKLKKIAELLCKRGASTD  300 (337)
T ss_dssp             HHHHHHHTTCHHH-----------HHHHHTSTTCCTTCBCTTSCBHHHHHHH----TTCHHHHHHHHTTSCSST
T ss_pred             HHHHHHHhhhhHH-----------HHHHHHhcCCcccCcCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCC
Confidence            9999999999999           9999987799999999999999999999    889999999999999884

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.95  E-value=1.5e-26  Score=217.35  Aligned_cols=162  Identities=22%  Similarity=0.220  Sum_probs=144.2

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||+|+   ..|+.+++++|++.|+++ +..|.+|+||||+|+..|+             ++..|.+|.||||+|+..
T Consensus        59 ~t~L~~A~---~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~  134 (351)
T 3utm_A           59 STPLHLAA---GYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASK  134 (351)
T ss_dssp             CCHHHHHH---HTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             CCHHHHHH---HcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            59999995   499999999999999998 8889999999999999999             567889999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCc------------------------------------------------------------h-
Q 038344           68 GHIDVLEELVRAKPDAAS------------------------------------------------------------A-   86 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~------------------------------------------------------------~-   86 (383)
                      |+.+++++|+++|++...                                                            + 
T Consensus       135 ~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~  214 (351)
T 3utm_A          135 NRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETA  214 (351)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCH
T ss_pred             CCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCH
Confidence            999999999999887432                                                            1 


Q ss_pred             --------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccC
Q 038344           87 --------------PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNAN  152 (383)
Q Consensus        87 --------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~  152 (383)
                                    .+++|+   ..+.++|.+|.+|+||||+|+..|+.++           +++|++. |+++|.+|..
T Consensus       215 L~~A~~~~~~~~~~~~~~Ll---~~g~~~~~~~~~g~t~L~~A~~~g~~~~-----------v~~Ll~~-ga~~n~~d~~  279 (351)
T 3utm_A          215 LHCAVASLHPKRKQVAELLL---RKGANVNEKNKDFMTPLHVAAERAHNDV-----------MEVLHKH-GAKMNALDSL  279 (351)
T ss_dssp             HHHHHHCCSTTHHHHHHHHH---HTTCCTTCCCTTCCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTTCCCTT
T ss_pred             HHHHHHHhCccHHHHHHHHH---HcCCCcCCcCCCCCCHHHHHHHcCCHHH-----------HHHHHHC-CCCCCCcCCC
Confidence                          222333   3677889999999999999999999999           9999996 9999999999


Q ss_pred             CCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          153 GFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       153 G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      |+||||+|+.    .++.+++++|+++|+++..
T Consensus       280 g~t~L~~A~~----~~~~~~v~~Ll~~gad~~~  308 (351)
T 3utm_A          280 GQTALHRAAL----AGHLQTCRLLLSYGSDPSI  308 (351)
T ss_dssp             SCCHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             CCCHHHHHHH----cCcHHHHHHHHHcCCCCCC
Confidence            9999999999    8899999999999999854

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.95  E-value=1.7e-26  Score=204.86  Aligned_cols=159  Identities=18%  Similarity=0.179  Sum_probs=132.2

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhc-CCcccccCCCCCCcHHHHHHHcCC-------------c-----cccCCCCCcHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQ-KPELARKSDSRKSSALHIASQKGK-------------C-----SATDVDGRNAL   61 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~TpLh~Aa~~g~-------------~-----~~~d~~G~tpL   61 (383)
                      +||||+|+   ..|+.++++.|++. +.++ +..|.+|+||||+|+..|+             .     +..|.+|.|||
T Consensus         4 ~t~L~~A~---~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L   79 (232)
T 2rfa_A            4 ESPLLLAA---KENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL   79 (232)
T ss_dssp             TCHHHHHH---HTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH
T ss_pred             CCHHHHHH---HcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH
Confidence            59999995   49999999999998 6666 8889999999999999999             1     45677999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhc
Q 038344           62 HLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTS  141 (383)
Q Consensus        62 h~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~  141 (383)
                      |+|+..|+.+++++|+++|++.....-.     .......+..|.+|+||||+|+..|+.++           +++|++.
T Consensus        80 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-----~~~~~~~~~~~~~g~t~L~~A~~~~~~~~-----------v~~Ll~~  143 (232)
T 2rfa_A           80 HIAVINQNVNLVRALLARGASVSARATG-----SVFHYRPHNLIYYGEHPLSFAACVGSEEI-----------VRLLIEH  143 (232)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCCS-----GGGSCCTTCSCCCCSSHHHHHHHHTCHHH-----------HHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCCcccCC-----cceeecccccccCCCCHHHHHHHcCCHHH-----------HHHHHHC
Confidence            9999999999999999999883211000     00001123345589999999999999999           9999996


Q ss_pred             ccccccccccCCCCHHHHHHhccCCcchhhHH----HHHHHhcCCCC
Q 038344          142 TAIEVNAVNANGFTAWDILAQSKRDIKYWEIG----ELLRRARGNSA  184 (383)
Q Consensus       142 ~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~----~~L~~~ga~~~  184 (383)
                       |+|++.+|.+|+||||+|+.    .++.+++    ++|+++|++..
T Consensus       144 -ga~~~~~d~~g~t~L~~A~~----~~~~~~~~~i~~~Ll~~g~~~~  185 (232)
T 2rfa_A          144 -GADIRAQDSLGNTVLHILIL----QPNKTFACQMYNLLLSYDGGDH  185 (232)
T ss_dssp             -TCCTTCCCTTSCCHHHHHHT----CSCHHHHHHHHHHHHHTTCSCS
T ss_pred             -CCCCCCCCCCCCCHHHHHHH----cCChHHHHHHHHHHHhcCCchh
Confidence             99999999999999999999    6777766    99999999763

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=5.2e-27  Score=200.11  Aligned_cols=148  Identities=23%  Similarity=0.216  Sum_probs=137.9

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||.|+.   .|+.++++.|++.++...+..|..|+||||+|+..|+             ++.+|.+|.||||+|+..
T Consensus         6 ~~~l~~A~~---~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            6 MDDIFTQCR---EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             -CCHHHHHH---HTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHH---cCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            478999955   9999999999999777668999999999999999998             677889999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccc
Q 038344           68 GHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVN  147 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~  147 (383)
                      |+.+++++|+++|++                  +|.+|.+|+||||+|+..|+.++           +++|++. |++++
T Consensus        83 ~~~~~v~~Ll~~g~~------------------~~~~d~~g~t~L~~A~~~~~~~~-----------v~~Ll~~-ga~~~  132 (179)
T 3f6q_A           83 GHRDIVQKLLQYKAD------------------INAVNEHGNVPLHYACFWGQDQV-----------AEDLVAN-GALVS  132 (179)
T ss_dssp             TCHHHHHHHHHTTCC------------------TTCCCTTSCCHHHHHHHTTCHHH-----------HHHHHHT-TCCSS
T ss_pred             CCHHHHHHHHHcCCC------------------CCccCCCCCCHHHHHHHcCCHHH-----------HHHHHHC-CCCcc
Confidence            999999999999888                  89999999999999999999999           9999996 99999


Q ss_pred             ccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          148 AVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       148 ~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      ..|.+|.||+|+|+.    .++.+++++|+++|++.+.
T Consensus       133 ~~~~~g~tpl~~A~~----~~~~~~~~~L~~~g~~~~~  166 (179)
T 3f6q_A          133 ICNKYGEMPVDKAKA----PLRELLRERAEKMGQNLNR  166 (179)
T ss_dssp             BCCTTSCCGGGGSCH----HHHHHHHHHHHHTTCCCSC
T ss_pred             hhccCCCCcHHHHHH----HHHHHHHHHHHHhhcCccc
Confidence            999999999999998    8889999999999999853

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.94  E-value=2.4e-26  Score=210.99  Aligned_cols=160  Identities=18%  Similarity=0.165  Sum_probs=140.7

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||+|+   ..|+.++++.|++.++++ +..|.+|+||||+|+..|+             ++.+|.+|+||||+|+..
T Consensus        60 ~t~L~~Aa---~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~  135 (285)
T 3d9h_A           60 WSPMHEAA---IHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS  135 (285)
T ss_dssp             CCHHHHHH---HTTCHHHHHHHHHTTCCS-CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH
T ss_pred             CCHHHHHH---HcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            59999995   499999999999999987 8889999999999999998             577899999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCch-----------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhc
Q 038344           68 GHIDVLEELVRAKPDAASA-----------------PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITY  130 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~-----------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~  130 (383)
                      |+.+++++|+++|++....                 .+++|++   .+.+++.+|.+|+||||+|+..|+.++       
T Consensus       136 ~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~---~g~~~~~~d~~g~t~L~~A~~~~~~~~-------  205 (285)
T 3d9h_A          136 GSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIA---YGGNIDHKISHLGTPLYLACENQQRAC-------  205 (285)
T ss_dssp             TCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHH---TTCCTTCCBTTTBCHHHHHHHTTCHHH-------
T ss_pred             CHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH---CCCCCCCcCCCCCCHHHHHHHcCcHHH-------
Confidence            9999999999998875422                 4455555   667788899999999999999999999       


Q ss_pred             hhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          131 KSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       131 ~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                          +++|++. |++++. |..|+||||+|+.    .++.+++++|+++|+++.
T Consensus       206 ----v~~Ll~~-ga~~~~-~~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~  249 (285)
T 3d9h_A          206 ----VKKLLES-GADVNQ-GKGQDSPLHAVVR----TASEELACLLMDFGADTQ  249 (285)
T ss_dssp             ----HHHHHHT-TCCTTC-CBTTBCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             ----HHHHHHC-CCCCCC-CCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCC
Confidence                9999986 899885 8889999999998    788899999999998874

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.94  E-value=3.1e-27  Score=210.39  Aligned_cols=161  Identities=20%  Similarity=0.283  Sum_probs=91.1

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCc---ccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPE---LARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLA   64 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~---~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A   64 (383)
                      +||||+|+   ..|+.++++.|++.++.   ..+..|..|+||||+|+..|+             ++.+|.+|.||||+|
T Consensus         9 ~t~L~~A~---~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   85 (236)
T 1ikn_D            9 DSFLHLAI---IHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA   85 (236)
T ss_dssp             CCTTHHHH---HTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred             CchhHHHH---HcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            46777763   36777777777666542   235666667777777777666             445566677777777


Q ss_pred             HHcCCHHHHHHHHHcCCCCCc------------h------------HHHHHhhccCCcccccCCCC-CCCcHHHHHHHcC
Q 038344           65 AMEGHIDVLEELVRAKPDAAS------------A------------PLKSFLETREGSELLNANDD-NGMTILHLAVADK  119 (383)
Q Consensus        65 ~~~g~~~iv~~Ll~~~~~~~~------------~------------~l~~l~~~~~~~~~~n~~d~-~g~TpLh~A~~~~  119 (383)
                      +..|+.+++++|++++++...            +            .+++|++   .+.+++.+|. .|+||||+|+..|
T Consensus        86 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~---~g~~~~~~~~~~g~tpL~~A~~~~  162 (236)
T 1ikn_D           86 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS---LGADVNAQEPCNGRTALHLAVDLQ  162 (236)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH---HTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH---cCCCCCCCCCCCCCCHHHHHHHcC
Confidence            777777777777776654110            0            1111221   2222555554 5556666666555


Q ss_pred             ChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCC
Q 038344          120 QIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNS  183 (383)
Q Consensus       120 ~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~  183 (383)
                      +.++           +++|++. |++++.+|..|.||||+|+.    .++.+++++|+++|++.
T Consensus       163 ~~~~-----------v~~Ll~~-ga~~~~~~~~g~tpl~~A~~----~~~~~~~~~Ll~~ga~~  210 (236)
T 1ikn_D          163 NPDL-----------VSLLLKC-GADVNRVTYQGYSPYQLTWG----RPSTRIQQQLGQLTLEN  210 (236)
T ss_dssp             CHHH-----------HHHHHTT-TCCSCCCCTTCCCGGGGCTT----SSCHHHHHHHHTTSCGG
T ss_pred             CHHH-----------HHHHHHc-CCCCCcccCCCCCHHHHHHc----cCchHHHHHHHHcchhh
Confidence            5555           5555554 55555555556666665555    45555556666555554

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.94  E-value=1.2e-26  Score=201.20  Aligned_cols=155  Identities=18%  Similarity=0.200  Sum_probs=122.9

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||.|+   ..|+.+.++.|++.++...+..|.+|+||||+|+..|+             ++.+|..|.||||+|+..
T Consensus         6 ~~~L~~A~---~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            6 VGALLEAA---NQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             TTHHHHHH---HTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             ccHHHHHH---HhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            48999994   49999999999999884458889999999999999998             577888999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccc
Q 038344           68 GHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVN  147 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~  147 (383)
                      |+.+++++|++.+..                 .++.+|.+|+||||+|+..|+.++           +++|++..+++++
T Consensus        83 ~~~~~~~~Ll~~~~~-----------------~~~~~~~~g~t~L~~A~~~~~~~~-----------v~~Ll~~g~~~~~  134 (201)
T 3hra_A           83 GRTEILAYMLKHATP-----------------DLNKHNRYGGNALIPAAEKGHIDN-----------VKLLLEDGREDID  134 (201)
T ss_dssp             TCHHHHHHHHHHSCC-----------------CTTCCCTTSCCSHHHHHHTTCHHH-----------HHHHHHHCCCCTT
T ss_pred             CCHHHHHHHHhccCc-----------------ccccccCCCCcHHHHHHHcCCHHH-----------HHHHHHcCCCCcC
Confidence            999999999954432                 267777888888888888888888           8888876227788


Q ss_pred             ccccCCCCHHHHHHhccC-CcchhhHHHHHHHhcCCCCCC
Q 038344          148 AVNANGFTAWDILAQSKR-DIKYWEIGELLRRARGNSAKD  186 (383)
Q Consensus       148 ~~n~~G~TpL~~A~~~~~-~~~~~~i~~~L~~~ga~~~~~  186 (383)
                      .+|..|+||||+|+.... ..++.+++++|+++|+++...
T Consensus       135 ~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~  174 (201)
T 3hra_A          135 FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK  174 (201)
T ss_dssp             CCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCC
T ss_pred             CCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCcc
Confidence            888888888888877321 122367888888888877543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.94  E-value=2.6e-26  Score=203.41  Aligned_cols=161  Identities=20%  Similarity=0.263  Sum_probs=136.4

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEG   68 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g   68 (383)
                      ||||.|+   ..|+.+.++++++.++...+..|.+|+||||+|+..|+             ++.+|.+|+||||+|+..|
T Consensus         8 ~~l~~A~---~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   84 (231)
T 3aji_A            8 IMICNLA---YSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG   84 (231)
T ss_dssp             SHHHHHH---HHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred             chHHHHH---HhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence            7889884   48999999999999888778889999999999999988             5677888999999999999


Q ss_pred             CHHHHHHHHHcCCCCCch------------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhc
Q 038344           69 HIDVLEELVRAKPDAASA------------------PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITY  130 (383)
Q Consensus        69 ~~~iv~~Ll~~~~~~~~~------------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~  130 (383)
                      +.+++++|+++|++....                  .+++|++   .+..++.+|..|.||||+|+..|+.++       
T Consensus        85 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~---~g~~~~~~~~~g~t~L~~A~~~~~~~~-------  154 (231)
T 3aji_A           85 XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE---GGANPDAKDHYDATAMHRAAAKGNLKM-------  154 (231)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH---TTCCTTCCCTTSCCHHHHHHHHTCHHH-------
T ss_pred             HHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH---cCCCCCCcCCCCCcHHHHHHHcCCHHH-------
Confidence            999999999988875422                  3444444   566788888899999999999999998       


Q ss_pred             hhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          131 KSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       131 ~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                          +++|++. |++++.+|..|+||||+|+.    .++.+++++|+++|+++.
T Consensus       155 ----v~~Ll~~-g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~  199 (231)
T 3aji_A          155 ----VHILLFY-KASTNIQDTEGNTPLHLACD----EERVEEAKFLVTQGASIY  199 (231)
T ss_dssp             ----HHHHHHT-TCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSC
T ss_pred             ----HHHHHhc-CCCccccCCCCCCHHHHHHH----CCCHHHHHHHHHCCCCCC
Confidence                9999985 99999999999999999998    788899999999998874

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.94  E-value=5.3e-26  Score=202.27  Aligned_cols=161  Identities=21%  Similarity=0.320  Sum_probs=137.8

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||+|+.   .|+.+++++|+++|.++ +..|.+|+||||+|+..|+             ++.+|.+|.||||+|+..
T Consensus        12 ~t~L~~A~~---~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   87 (237)
T 3b7b_A           12 RSPLHAAAE---AGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK   87 (237)
T ss_dssp             CCHHHHHHH---HTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHT
T ss_pred             CCHHHHHHH---cCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Confidence            599999954   99999999999999998 7889999999999999998             567788999999999999


Q ss_pred             CCHHHHHHHHHcCC-CCCc------h------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhh
Q 038344           68 GHIDVLEELVRAKP-DAAS------A------------PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHI  128 (383)
Q Consensus        68 g~~~iv~~Ll~~~~-~~~~------~------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l  128 (383)
                      |+.+++++|+++++ +...      +            .+++|++   .+..++.+|.+|+||||+|+..|+.++     
T Consensus        88 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~---~g~~~~~~~~~g~t~L~~A~~~~~~~~-----  159 (237)
T 3b7b_A           88 GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS---KGSDINIRDNEENICLHWAAFSGCVDI-----  159 (237)
T ss_dssp             TCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH---TTCCTTCCCTTSCCHHHHHHHHCCHHH-----
T ss_pred             CCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH---CCCCCCccCCCCCCHHHHHHHCCCHHH-----
Confidence            99999999999883 3221      1            4455555   566788888899999999999999888     


Q ss_pred             hchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          129 TYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       129 ~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                            +++|++. |++++..|..|.||||+|+.    .++.+++++|+++|+++.
T Consensus       160 ------~~~Ll~~-g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~  204 (237)
T 3b7b_A          160 ------AEILLAA-KCDLHAVNIHGDSPLHIAAR----ENRYDCVVLFLSRDSDVT  204 (237)
T ss_dssp             ------HHHHHTT-TCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHTTTCCTT
T ss_pred             ------HHHHHHc-CCCCCCcCCCCCCHHHHHHH----hCCHhHHHHHHHcCCCCC
Confidence                  8988886 89999999999999999988    778889999999988874

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.94  E-value=6.3e-26  Score=202.03  Aligned_cols=161  Identities=23%  Similarity=0.261  Sum_probs=137.9

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHh----cCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILC----QKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHL   63 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~----~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~   63 (383)
                      +||||+|+.   .|+.+++++|++    .+.++ +..|..|+||||+|+..|+             ++..|.+|.||||+
T Consensus        10 ~t~L~~A~~---~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~   85 (241)
T 1k1a_A           10 DTPLHIAVV---QGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL   85 (241)
T ss_dssp             CCHHHHHHH---TTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CcHHHHHHH---cCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            589999954   999999999997    45665 8889999999999999998             56778899999999


Q ss_pred             HHHcCCHHHHHHHHHcCC----CCCch------------------HHHHHhhccCCcccccCCC-CCCCcHHHHHHHcCC
Q 038344           64 AAMEGHIDVLEELVRAKP----DAASA------------------PLKSFLETREGSELLNAND-DNGMTILHLAVADKQ  120 (383)
Q Consensus        64 A~~~g~~~iv~~Ll~~~~----~~~~~------------------~l~~l~~~~~~~~~~n~~d-~~g~TpLh~A~~~~~  120 (383)
                      |+..|+.+++++|++.++    +....                  .+++|++   .+.+++.+| ..|+||||+|+..|+
T Consensus        86 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~---~g~~~~~~~~~~g~t~L~~A~~~~~  162 (241)
T 1k1a_A           86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE---RGADIDAVDIKSGRSPLIHAVENNS  162 (241)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH---TTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHH---cCCCcccccccCCCcHHHHHHHcCC
Confidence            999999999999999887    32211                  4455555   567788888 789999999999999


Q ss_pred             hhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          121 IEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       121 ~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      .++           +++|++. |++++..|.+|+||||+|+.    .++.+++++|+++|+++.
T Consensus       163 ~~~-----------v~~Ll~~-g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~  210 (241)
T 1k1a_A          163 LSM-----------VQLLLQH-GANVNAQMYSGSSALHSASG----RGLLPLVRTLVRSGADSS  210 (241)
T ss_dssp             HHH-----------HHHHHHT-TCCTTCBCTTSCBHHHHHHH----HTCHHHHHHHHHTTCCTT
T ss_pred             HHH-----------HHHHHHc-CCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHhcCCCCC
Confidence            999           9999996 99999999999999999999    788999999999999874

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.94  E-value=4.5e-26  Score=209.87  Aligned_cols=164  Identities=22%  Similarity=0.272  Sum_probs=139.4

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEG   68 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g   68 (383)
                      ||||.||.   .|+.++++.|++.|+++ +..|.+|+||||+|+..|+             ++.+|.+|+||||+|+..|
T Consensus        42 t~l~~A~~---~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g  117 (299)
T 1s70_B           42 AVFLAACS---SGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (299)
T ss_dssp             HHHHHHHH---HTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             cHHHHHHH---cCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence            78999954   99999999999999998 8889999999999999999             6678899999999999999


Q ss_pred             CHHHHHHHHHcCCCCCch------H------------HHHHhhcc------------------------CCcccccCCCC
Q 038344           69 HIDVLEELVRAKPDAASA------P------------LKSFLETR------------------------EGSELLNANDD  106 (383)
Q Consensus        69 ~~~iv~~Ll~~~~~~~~~------~------------l~~l~~~~------------------------~~~~~~n~~d~  106 (383)
                      +.+++++|+++|++....      +            ++.++...                        .........|.
T Consensus       118 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  197 (299)
T 1s70_B          118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK  197 (299)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred             CHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcC
Confidence            999999999999876432      2            22222110                        01112334678


Q ss_pred             CCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          107 NGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       107 ~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      .|.||||+|+..|+.++           +++|++. |+|+|.+|.+|.||||+|+.    .++.+++++|+++|+++..
T Consensus       198 ~g~t~L~~A~~~g~~~~-----------v~~Ll~~-g~d~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~gad~~~  260 (299)
T 1s70_B          198 SGGTALHVAAAKGYTEV-----------LKLLIQA-RYDVNIKDYDGWTPLHAAAH----WGKEEACRILVENLCDMEA  260 (299)
T ss_dssp             TCCCHHHHHHHHTCHHH-----------HHHHHTT-TCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCHHHHHHHCCcHHH-----------HHHHHHc-CCCCCCcCCCCCcHHHHHHh----cCCHHHHHHHHHcCCCCCC
Confidence            89999999999999999           9999996 99999999999999999999    8899999999999998753

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.94  E-value=3.2e-26  Score=208.71  Aligned_cols=142  Identities=25%  Similarity=0.303  Sum_probs=121.4

Q ss_pred             cccCCCCCCcHHHHHHHcCC----------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCch-------
Q 038344           30 ARKSDSRKSSALHIASQKGK----------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA-------   86 (383)
Q Consensus        30 ~~~~d~~g~TpLh~Aa~~g~----------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~-------   86 (383)
                      .+..|.+|+||||+|+..|+                ++.+|..|+||||+|+..|+.+++++|+++|++....       
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp   81 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            36789999999999999998                3567889999999999999999999999999886532       


Q ss_pred             -----------HHHHHhhccC--------------------------------------------CcccccCCCCCCCcH
Q 038344           87 -----------PLKSFLETRE--------------------------------------------GSELLNANDDNGMTI  111 (383)
Q Consensus        87 -----------~l~~l~~~~~--------------------------------------------~~~~~n~~d~~g~Tp  111 (383)
                                 .+++|++...                                            .+..++.+|..|+||
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  161 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence                       4455554321                                            123478899999999


Q ss_pred             HHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccC-CCCHHHHHHhccCCcchhhHHHHHHHhcCCCCCCC
Q 038344          112 LHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNAN-GFTAWDILAQSKRDIKYWEIGELLRRARGNSAKDM  187 (383)
Q Consensus       112 Lh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~-G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~~l  187 (383)
                      ||+|+..|+.++           +++|++. |++++..+.. |+||||+|+.    .++.+++++|+++|+++...-
T Consensus       162 L~~A~~~g~~~~-----------v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~gad~~~~d  222 (282)
T 1oy3_D          162 LHVAVIHKDAEM-----------VRLLRDA-GADLNKPEPTCGRTPLHLAVE----AQAASVLELLLKAGADPTARM  222 (282)
T ss_dssp             HHHHHHTTCHHH-----------HHHHHHH-TCCTTCCCTTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHcCCHHH-----------HHHHHHc-CCCCCCCCCCCCcCHHHHHHH----cCCHHHHHHHHHcCCCCcccc
Confidence            999999999999           9999996 9999999865 9999999999    889999999999999986543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=3.9e-26  Score=189.57  Aligned_cols=136  Identities=29%  Similarity=0.381  Sum_probs=126.9

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEG   68 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g   68 (383)
                      ||||.|+   ..|+.+++++|++.+++. + .|..|.||||+|+..|+             ++.+|.+|+||||+|+..|
T Consensus         4 ~~L~~A~---~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            4 KKLLEAA---RAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHH---HHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             HHHHHHH---HcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            7899995   499999999999999977 3 58899999999999998             5678899999999999999


Q ss_pred             CHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccc
Q 038344           69 HIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNA  148 (383)
Q Consensus        69 ~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~  148 (383)
                      +.+++++|+++|++                  +|.+|.+|+||||+|+..|+.++           +++|++. |++++.
T Consensus        79 ~~~~v~~Ll~~g~~------------------~~~~~~~g~t~L~~A~~~~~~~~-----------v~~Ll~~-ga~~~~  128 (153)
T 1awc_B           79 HANIVEVLLKHGAD------------------VNAKDMLKMTALHWATEHNHQEV-----------VELLIKY-GADVHT  128 (153)
T ss_dssp             CHHHHHHHHTTTCC------------------TTCCCTTSCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTTC
T ss_pred             hHHHHHHHHHcCCC------------------CCCCCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-CCCccc
Confidence            99999999999887                  89999999999999999999999           9999996 999999


Q ss_pred             cccCCCCHHHHHHhccCCcchhhHHHHH
Q 038344          149 VNANGFTAWDILAQSKRDIKYWEIGELL  176 (383)
Q Consensus       149 ~n~~G~TpL~~A~~~~~~~~~~~i~~~L  176 (383)
                      +|.+|.||+|+|+.    .++.+++++|
T Consensus       129 ~~~~g~t~l~~A~~----~~~~~i~~~L  152 (153)
T 1awc_B          129 QSKFCKTAFDISID----NGNEDLAEIL  152 (153)
T ss_dssp             CCTTSCCHHHHHHH----TTCHHHHHHH
T ss_pred             cCCCCCCHHHHHHH----cCCHHHHHHh
Confidence            99999999999999    8889999887

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=1.3e-26  Score=194.85  Aligned_cols=142  Identities=28%  Similarity=0.312  Sum_probs=129.3

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEG   68 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g   68 (383)
                      ||||.|+   ..|+.++++.|++.++...+..|..|+||||+|+..|+             ++.+|.+|+||||+|+..|
T Consensus        10 ~~l~~A~---~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   86 (165)
T 3twr_A           10 RQLLEAA---KAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYG   86 (165)
T ss_dssp             HHHHHHH---HHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHH---HhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcC
Confidence            7899995   49999999999998776668889999999999999998             6778999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccc
Q 038344           69 HIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNA  148 (383)
Q Consensus        69 ~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~  148 (383)
                      +.+++++|+++|++                  +|.+|.+|+||||+|+..|+.++           +++|++. |++++.
T Consensus        87 ~~~~v~~Ll~~g~~------------------~~~~~~~g~t~L~~A~~~~~~~~-----------v~~Ll~~-ga~~~~  136 (165)
T 3twr_A           87 HYEVAELLVKHGAV------------------VNVADLWKFTPLHEAAAKGKYEI-----------CKLLLQH-GADPTK  136 (165)
T ss_dssp             CHHHHHHHHHTTCC------------------TTCCCTTCCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTTC
T ss_pred             cHHHHHHHHhCCCC------------------CCCcCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-CCCCcc
Confidence            99999999999888                  89999999999999999999999           9999996 999999


Q ss_pred             cccCCCCHHHHHHhccCCcchhhHHHHHHHhcC
Q 038344          149 VNANGFTAWDILAQSKRDIKYWEIGELLRRARG  181 (383)
Q Consensus       149 ~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga  181 (383)
                      +|.+|+||+|+|..     ++.+++++|+++||
T Consensus       137 ~~~~g~t~l~~a~~-----~~~~i~~~L~~~gA  164 (165)
T 3twr_A          137 KNRDGNTPLDLVKD-----GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CCTTSCCTGGGSCT-----TCHHHHHHHHTC--
T ss_pred             cCCCCCChhHhHhc-----CChHHHHHHhhccc
Confidence            99999999999765     56699999999886

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=1.7e-25  Score=203.78  Aligned_cols=164  Identities=24%  Similarity=0.318  Sum_probs=100.4

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||+|+.   .|+.+++++|++.++++ +..|.+|.||||+|+..|+             ++..|.+|.||||+|+..
T Consensus        40 ~t~L~~A~~---~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  115 (285)
T 1wdy_A           40 WTPLHNAVQ---MSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY  115 (285)
T ss_dssp             CCHHHHHHH---TTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT
T ss_pred             CcHHHHHHH---cCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHh
Confidence            367777743   77777777777777766 5667777777777777776             345566666666666666


Q ss_pred             CCHHHHHHHHHcCCCCCc----------------h------------HHHHHhhc-------------------------
Q 038344           68 GHIDVLEELVRAKPDAAS----------------A------------PLKSFLET-------------------------   94 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~----------------~------------~l~~l~~~-------------------------   94 (383)
                      |+.+++++|+++|++...                +            .+++|++.                         
T Consensus       116 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  195 (285)
T 1wdy_A          116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD  195 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT
T ss_pred             CCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc
Confidence            666666666666554321                1            22233321                         


Q ss_pred             ----------cCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhcc
Q 038344           95 ----------REGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSK  164 (383)
Q Consensus        95 ----------~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~  164 (383)
                                ...+.++|.+|.+|+||||+|+..|+.++           +++|+++.|++++.+|.+|+||||+|+.  
T Consensus       196 ~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~-----------v~~Ll~~~g~~~~~~~~~g~t~l~~A~~--  262 (285)
T 1wdy_A          196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL-----------VQRLLEQEHIEINDTDSDGKTALLLAVE--  262 (285)
T ss_dssp             TTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHH-----------HHHHHHSSSCCTTCCCTTSCCHHHHHHH--
T ss_pred             chHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHH-----------HHHHHhccCCCccccCCCCCcHHHHHHH--
Confidence                      11334455555555555555555555555           6666664466666666666666666666  


Q ss_pred             CCcchhhHHHHHHHhcCCC
Q 038344          165 RDIKYWEIGELLRRARGNS  183 (383)
Q Consensus       165 ~~~~~~~i~~~L~~~ga~~  183 (383)
                        .++.+++++|+++|+++
T Consensus       263 --~~~~~i~~~Ll~~Ga~~  279 (285)
T 1wdy_A          263 --LKLKKIAELLCKRGAST  279 (285)
T ss_dssp             --TTCHHHHHHHHHHSSCS
T ss_pred             --cCcHHHHHHHHHcCCCC
Confidence              55666666666666665

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.94  E-value=4.2e-26  Score=202.10  Aligned_cols=160  Identities=23%  Similarity=0.263  Sum_probs=143.6

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||+|+.   .|+.+++++|++.+.++ +..|..|+||||+|+..|+             ++.+|.+|.||||+|+..
T Consensus        41 ~t~L~~A~~---~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  116 (231)
T 3aji_A           41 RTALHWACS---AGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK  116 (231)
T ss_dssp             CCHHHHHHH---HTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCHHHHHHH---cCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            589999954   99999999999999988 7889999999999999998             567888999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCch------------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhh
Q 038344           68 GHIDVLEELVRAKPDAASA------------------PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHIT  129 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~------------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~  129 (383)
                      |+.+++++|+++|.+....                  .+++|++   .+.++|.+|.+|+||||+|+..|+.++      
T Consensus       117 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~---~g~~~~~~~~~g~t~L~~A~~~~~~~~------  187 (231)
T 3aji_A          117 NRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF---YKASTNIQDTEGNTPLHLACDEERVEE------  187 (231)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH---TTCCSCCCCTTSCCHHHHHHHTTCHHH------
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh---cCCCccccCCCCCCHHHHHHHCCCHHH------
Confidence            9999999999998875432                  4555555   677899999999999999999999999      


Q ss_pred             chhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCC
Q 038344          130 YKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNS  183 (383)
Q Consensus       130 ~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~  183 (383)
                           +++|++. |++++.+|.+|.||+|+|..    .++.+++++|.++|++.
T Consensus       188 -----v~~Ll~~-ga~~~~~~~~g~t~l~~A~~----~~~~~i~~lL~~~~a~i  231 (231)
T 3aji_A          188 -----AKFLVTQ-GASIYIENKEEKTPLQVAKG----GLGLILKRLAEGEEASM  231 (231)
T ss_dssp             -----HHHHHHT-TCCSCCCCTTSCCHHHHSCH----HHHHHHHHHHHHHHHCC
T ss_pred             -----HHHHHHC-CCCCCCCCCCCCCHHHHHHh----hHHHHHHHHHccccccC
Confidence                 9999996 99999999999999999988    78899999999998763

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.94  E-value=5.8e-27  Score=213.32  Aligned_cols=144  Identities=24%  Similarity=0.355  Sum_probs=110.5

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||+|+   ..|+.+++++|++.++++ +..+.+|.||+|+|+..++             ++.+|.+|+||||+|++.
T Consensus        87 ~TpLh~A~---~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~  162 (269)
T 4b93_B           87 SSPLHVAA---LHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSG  162 (269)
T ss_dssp             CCHHHHHH---HTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT
T ss_pred             CCHHHHHH---HcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence            47777774   377777777777777776 6667777777777777776             566777788888888888


Q ss_pred             CCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccc
Q 038344           68 GHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVN  147 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~  147 (383)
                      |+.+++++|+++|++                  +|.+|.+|+||||+|+..|+.++           +++|++. |+|+|
T Consensus       163 g~~~~v~~Ll~~gad------------------vn~~~~~g~t~Lh~A~~~g~~~~-----------v~~Ll~~-Gad~~  212 (269)
T 4b93_B          163 GHHELVALLLQHGAS------------------INASNNKGNTALHEAVIEKHVFV-----------VELLLLH-GASVQ  212 (269)
T ss_dssp             TCGGGHHHHHHTTCC------------------TTCBCTTSCBHHHHHHHTTCHHH-----------HHHHHHT-TCCSC
T ss_pred             CCHHHHHHHHHCCCC------------------CCccccCCCcHHHHHHHcCCHHH-----------HHHHHHC-CCCCC
Confidence            888888888877776                  89999999999999999999999           9999996 99999


Q ss_pred             ccccCCCCHHHHHHhccCCcch-hhHHHHHHHhcCC
Q 038344          148 AVNANGFTAWDILAQSKRDIKY-WEIGELLRRARGN  182 (383)
Q Consensus       148 ~~n~~G~TpL~~A~~~~~~~~~-~~i~~~L~~~ga~  182 (383)
                      .+|.+|+||||+|++    .+. .++++.|...++.
T Consensus       213 ~~d~~G~TpL~~A~~----~~~i~~lL~~l~~~~~~  244 (269)
T 4b93_B          213 VLNKRQRTAVDCAEQ----NSKIMELLQVVPSCVAS  244 (269)
T ss_dssp             CCCTTSCCSGGGSCT----TCHHHHHTTC-------
T ss_pred             CcCCCCCCHHHHHHh----CCcHHHHHHHHHHhchh
Confidence            999999999999987    333 3444444444443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=5.9e-26  Score=207.42  Aligned_cols=144  Identities=22%  Similarity=0.272  Sum_probs=131.7

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcC-----C-------------ccccCCCCCcHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-----K-------------CSATDVDGRNALH   62 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g-----~-------------~~~~d~~G~tpLh   62 (383)
                      +||||+|+   ..|+.++++.|++.|+...+..|..|+||||+|+..+     +             .+..|.+|+||||
T Consensus       112 ~T~Lh~A~---~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh  188 (276)
T 4hbd_A          112 NTALHYSV---SHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALM  188 (276)
T ss_dssp             CCHHHHHH---HTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHH
T ss_pred             CCHHHHHH---HCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            59999995   4999999999999999445899999999999999543     2             4566788999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcc
Q 038344           63 LAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTST  142 (383)
Q Consensus        63 ~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~  142 (383)
                      +|+..|+.+++++|+++|++                  +|.+|.+|+||||+|+..|+.++           +++|++..
T Consensus       189 ~A~~~g~~~~v~~Ll~~gad------------------~n~~d~~G~TpLh~A~~~g~~~i-----------v~~Ll~~~  239 (276)
T 4hbd_A          189 LAVSHGRVDVVKALLACEAD------------------VNVQDDDGSTALMCACEHGHKEI-----------AGLLLAVP  239 (276)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC------------------TTCCCTTSCCHHHHHHHHTCHHH-----------HHHHHTST
T ss_pred             HHHHcCCHHHHHHHHhCCCC------------------CCCCCCCCCCHHHHHHHCCCHHH-----------HHHHHhcC
Confidence            99999999999999999888                  89999999999999999999999           99999955


Q ss_pred             cccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhc
Q 038344          143 AIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRAR  180 (383)
Q Consensus       143 g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~g  180 (383)
                      |+|++.+|.+|+||||+|+.    .++.+++++|++++
T Consensus       240 gad~~~~d~~g~TpL~~A~~----~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          240 SCDISLTDRDGSTALMVALD----AGQSEIASMLYSRM  273 (276)
T ss_dssp             TCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHHC
T ss_pred             CCCCcCcCCCCCCHHHHHHH----cCCHHHHHHHHhcc
Confidence            99999999999999999999    88999999999875

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=1.1e-25  Score=187.21  Aligned_cols=139  Identities=23%  Similarity=0.323  Sum_probs=127.6

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEG   68 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g   68 (383)
                      ||||.|+   ..|+.++++.|++..+...+..|..|+||||+ +..|+             ++.+|.+|.||||+|+..|
T Consensus         4 ~~L~~A~---~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            4 DRLSGAA---ARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHH---HHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             hHHHHHH---HhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence            7999995   49999999999999433448889999999999 88888             6778899999999999999


Q ss_pred             CHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccc
Q 038344           69 HIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNA  148 (383)
Q Consensus        69 ~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~  148 (383)
                      +.+++++|+++|++                  +|.+|.+|+||||+|+..|+.++           +++|++.  ++++.
T Consensus        80 ~~~~v~~Ll~~g~~------------------~~~~~~~g~t~L~~A~~~~~~~~-----------v~~Ll~~--~~~~~  128 (156)
T 1bd8_A           80 FLDTLKVLVEHGAD------------------VNVPDGTGALPIHLAVQEGHTAV-----------VSFLAAE--SDLHR  128 (156)
T ss_dssp             CHHHHHHHHHTTCC------------------SCCCCTTSCCHHHHHHHHTCHHH-----------HHHHHTT--SCTTC
T ss_pred             cHHHHHHHHHcCCC------------------CCCcCCCCCcHHHHHHHhChHHH-----------HHHHHhc--cCCCC
Confidence            99999999999887                  89999999999999999999999           9999985  89999


Q ss_pred             cccCCCCHHHHHHhccCCcchhhHHHHHHHh
Q 038344          149 VNANGFTAWDILAQSKRDIKYWEIGELLRRA  179 (383)
Q Consensus       149 ~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~  179 (383)
                      .|.+|.||||+|+.    .++.+++++|+++
T Consensus       129 ~~~~g~t~l~~A~~----~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          129 RDARGLTPLELALQ----RGAQDLVDILQGH  155 (156)
T ss_dssp             CCTTSCCHHHHHHH----SCCHHHHHHHHTT
T ss_pred             cCCCCCCHHHHHHH----cCcHHHHHHHHhh
Confidence            99999999999999    8899999999864

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.93  E-value=2.8e-26  Score=208.91  Aligned_cols=149  Identities=21%  Similarity=0.217  Sum_probs=128.8

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcc------cc----cCCCCCCcHHHHHHHcCC-------------ccccCC--
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPEL------AR----KSDSRKSSALHIASQKGK-------------CSATDV--   55 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~------~~----~~d~~g~TpLh~Aa~~g~-------------~~~~d~--   55 (383)
                      +||||+|+.....|+.+++++|++.+++.      .+    ..|..|+||||+|+..|+             ++.+|.  
T Consensus        55 ~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~  134 (273)
T 2pnn_A           55 KTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGD  134 (273)
T ss_dssp             CCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSG
T ss_pred             CCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccc
Confidence            59999996522349999999999997652      12    256789999999999999             555665  


Q ss_pred             ------------CCCcHHHHHHHcCCHHHHHHHHH---cCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCC
Q 038344           56 ------------DGRNALHLAAMEGHIDVLEELVR---AKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQ  120 (383)
Q Consensus        56 ------------~G~tpLh~A~~~g~~~iv~~Ll~---~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~  120 (383)
                                  +|.||||+|+..|+.+++++|++   +|++                  +|.+|.+|+||||+|+..|+
T Consensus       135 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad------------------~~~~d~~g~tpLh~A~~~~~  196 (273)
T 2pnn_A          135 FFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD------------------ISARDSVGNTVLHALVEVAD  196 (273)
T ss_dssp             GGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC------------------TTCCCTTSCCHHHHHHHHCC
T ss_pred             ccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC------------------ceeeCCCCCcHHHHHHHccC
Confidence                        79999999999999999999999   7777                  89999999999999999887


Q ss_pred             ---------hhHHHHhhhchhhHHHHhhhccccccc-------ccccCCCCHHHHHHhccCCcchhhHHHHHHHhcC-CC
Q 038344          121 ---------IEIWITHITYKSRAIKFFTTSTAIEVN-------AVNANGFTAWDILAQSKRDIKYWEIGELLRRARG-NS  183 (383)
Q Consensus       121 ---------~~~~~~~l~~~~~~v~~Ll~~~g~d~~-------~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga-~~  183 (383)
                               .++           +++|++. |+++|       .+|.+|+||||+|+.    .++.+++++|+++|+ ++
T Consensus       197 ~~~~~~~~~~~~-----------v~~Ll~~-ga~~n~~~~~~~~~d~~g~TpL~~A~~----~g~~~iv~~Ll~~ga~dp  260 (273)
T 2pnn_A          197 NTVDNTKFVTSM-----------YNEILIL-GAKLHPTLKLEEITNRKGLTPLALAAS----SGKIGVLAYILQREIHEP  260 (273)
T ss_dssp             SCHHHHHHHHHH-----------HHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHTC--
T ss_pred             cchhHHHHHHHH-----------HHHHHHh-hhhcccccccccccCCCCCCHHHHHHH----hChHHHHHHHHHCCCCCc
Confidence                     567           9999996 99997       489999999999999    889999999999999 55

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.93  E-value=1.8e-25  Score=201.32  Aligned_cols=145  Identities=19%  Similarity=0.172  Sum_probs=132.7

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||+|+.   .|+.+++++|++.++...+..|.+|.||||+|+..|+             ++.+|.+|+||||+|+..
T Consensus        91 ~t~L~~A~~---~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~  167 (253)
T 1yyh_A           91 RTPLHAAVS---ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV  167 (253)
T ss_dssp             CCHHHHHHH---HTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHH
T ss_pred             CCHHHHHHH---cCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            599999954   8999999999999985558899999999999999998             677899999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccc
Q 038344           68 GHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVN  147 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~  147 (383)
                      |+.+++++|+++|++                  +|.+|.+|+||||+|+..|+.++           +++|++. |++++
T Consensus       168 ~~~~~v~~Ll~~ga~------------------~~~~~~~g~tpL~~A~~~~~~~~-----------v~~Ll~~-ga~~~  217 (253)
T 1yyh_A          168 NNVDAAVVLLKNGAN------------------KDMQNNREETPLFLAAREGSYET-----------AKVLLDH-FANRD  217 (253)
T ss_dssp             TCHHHHHHHHHTTCC------------------TTCCCTTSCCHHHHHHHHTCHHH-----------HHHHHHT-TCCTT
T ss_pred             CCHHHHHHHHHcCCC------------------CCCcCCCCCCHHHHHHHCCCHHH-----------HHHHHHc-CCCcc
Confidence            999999999999888                  89999999999999999999999           9999996 99999


Q ss_pred             ccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCC
Q 038344          148 AVNANGFTAWDILAQSKRDIKYWEIGELLRRARGN  182 (383)
Q Consensus       148 ~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~  182 (383)
                      .+|..|+||+|+|+.    .++.+++++|......
T Consensus       218 ~~d~~g~tpl~~A~~----~g~~~i~~~l~~~~~~  248 (253)
T 1yyh_A          218 ITDHMDRLPRDIAQE----RMHHDIVRLLDLEHHH  248 (253)
T ss_dssp             CCCTTCCCHHHHHHH----TTCHHHHHHHHC----
T ss_pred             ccccCCCCHHHHHHH----cCCHHHHHHHHHHhhh
Confidence            999999999999999    8999999999876443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=1.3e-26  Score=209.40  Aligned_cols=150  Identities=23%  Similarity=0.238  Sum_probs=131.6

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcc----------cccCCCCCCcHHHHHHHcCC-------------ccccC---
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPEL----------ARKSDSRKSSALHIASQKGK-------------CSATD---   54 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~----------~~~~d~~g~TpLh~Aa~~g~-------------~~~~d---   54 (383)
                      +||||+|+.++..|+.++++.|++.+++.          .+..|..|+||||+|+..|+             ++.+|   
T Consensus        47 ~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~  126 (260)
T 3jxi_A           47 KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR  126 (260)
T ss_dssp             CCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEEC
T ss_pred             CcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccccc
Confidence            59999997544689999999999987542          24456689999999999999             55566   


Q ss_pred             -----------CCCCcHHHHHHHcCCHHHHHHHHH---cCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCC
Q 038344           55 -----------VDGRNALHLAAMEGHIDVLEELVR---AKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQ  120 (383)
Q Consensus        55 -----------~~G~tpLh~A~~~g~~~iv~~Ll~---~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~  120 (383)
                                 .+|+||||+|+..|+.+++++|++   +|++                  +|.+|.+|+||||+|+..++
T Consensus       127 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~------------------~~~~d~~g~TpLh~A~~~~~  188 (260)
T 3jxi_A          127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD------------------LRRQDSRGNTVLHALVAIAD  188 (260)
T ss_dssp             CCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC------------------TTCCCTTSCCHHHHHHHHCC
T ss_pred             ccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC------------------CcccCCCCCcHHHHHHHhcc
Confidence                       579999999999999999999999   7777                  89999999999999998877


Q ss_pred             ---------hhHHHHhhhchhhHHHHhhhcccccc-------cccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          121 ---------IEIWITHITYKSRAIKFFTTSTAIEV-------NAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       121 ---------~~~~~~~l~~~~~~v~~Ll~~~g~d~-------~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                               .++           +++|++. |+++       +..|.+|.||||+|+.    .++.+++++|+++|+++.
T Consensus       189 ~~~~~~~~~~~~-----------v~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~----~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          189 NTRENTKFVTKM-----------YDLLLIK-CAKLFPDTNLEALLNNDGLSPLMMAAK----TGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             SSHHHHHHHHHH-----------HHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHH-----------HHHHHHh-CcccccccchhhcccCCCCCHHHHHHH----cCCHHHHHHHHHhCCCcc
Confidence                     566           9999996 9999       7899999999999999    899999999999998763

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.93  E-value=6.8e-26  Score=201.82  Aligned_cols=158  Identities=19%  Similarity=0.184  Sum_probs=136.4

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-----------------ccccCCCCCcHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-----------------CSATDVDGRNALHL   63 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-----------------~~~~d~~G~tpLh~   63 (383)
                      +||||+|+.   .|+.+++++|++.|+++ +..|..|+||||+|+..|+                 ++..|.+|.||||+
T Consensus        47 ~t~L~~A~~---~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~  122 (241)
T 1k1a_A           47 QTPLHLAVI---TTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV  122 (241)
T ss_dssp             CCHHHHHHH---TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHH
T ss_pred             CCHHHHHHH---cCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHH
Confidence            599999954   99999999999999988 7889999999999999998                 34567889999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCch-------------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHH
Q 038344           64 AAMEGHIDVLEELVRAKPDAASA-------------------PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIW  124 (383)
Q Consensus        64 A~~~g~~~iv~~Ll~~~~~~~~~-------------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~  124 (383)
                      |+..|+.+++++|+++|++....                   .+++|++   .+.++|.+|.+|+||||+|+..|+.++ 
T Consensus       123 A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~---~g~~~~~~~~~g~t~L~~A~~~~~~~~-  198 (241)
T 1k1a_A          123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ---HGANVNAQMYSGSSALHSASGRGLLPL-  198 (241)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH---TTCCTTCBCTTSCBHHHHHHHHTCHHH-
T ss_pred             HHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHH---cCCCCCCcCCCCCCHHHHHHHcCCHHH-
Confidence            99999999999999998875421                   4555555   678899999999999999999999999 


Q ss_pred             HHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcC
Q 038344          125 ITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARG  181 (383)
Q Consensus       125 ~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga  181 (383)
                                +++|++. |+|++.+|.+|+||+|+|+.    .++.++++.|.+.++
T Consensus       199 ----------v~~Ll~~-ga~~~~~~~~g~tpl~~A~~----~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          199 ----------VRTLVRS-GADSSLKNCHNDTPLMVARS----RRVIDILRGKATRPA  240 (241)
T ss_dssp             ----------HHHHHHT-TCCTTCCCTTSCCTTTTCSS----HHHHHHHTC------
T ss_pred             ----------HHHHHhc-CCCCCCcCCCCCCHHHHHHh----cCcHHHHhhhccCCC
Confidence                      9999996 99999999999999999999    889999999988765

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.93  E-value=4.6e-26  Score=205.38  Aligned_cols=146  Identities=25%  Similarity=0.231  Sum_probs=130.6

Q ss_pred             CChHHHHHHHHHc---CCHHHHHHHHhcCCcccc----------cCCCCCCcHHHHHHHcCC-------------ccccC
Q 038344            1 MTILQLAVAAALL---GHEDFVNEILCQKPELAR----------KSDSRKSSALHIASQKGK-------------CSATD   54 (383)
Q Consensus         1 ~TpLh~A~~Aa~~---g~~~~v~~Ll~~~~~~~~----------~~d~~g~TpLh~Aa~~g~-------------~~~~d   54 (383)
                      +||||+|+.   .   |+.++++.|++.+++...          ..|..|+||||+|+..|+             ++.+|
T Consensus        44 ~t~L~~A~~---~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~  120 (256)
T 2etb_A           44 KTCLMKAVL---NLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA  120 (256)
T ss_dssp             BCHHHHHHH---TCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCHHHHHHH---ccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc
Confidence            499999965   7   999999999999877621          234789999999999999             55566


Q ss_pred             CC-------------CCcHHHHHHHcCCHHHHHHHHH---cCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHH-
Q 038344           55 VD-------------GRNALHLAAMEGHIDVLEELVR---AKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVA-  117 (383)
Q Consensus        55 ~~-------------G~tpLh~A~~~g~~~iv~~Ll~---~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~-  117 (383)
                      ..             |.||||+|+..|+.+++++|++   +|++                  +|.+|.+|+||||+|+. 
T Consensus       121 ~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~------------------~n~~d~~g~TpLh~A~~~  182 (256)
T 2etb_A          121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS------------------LEATDSLGNTVLHALVMI  182 (256)
T ss_dssp             CSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC------------------TTCCCTTSCCHHHHHHHH
T ss_pred             ccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC------------------cCccCCCCCCHHHHHHHc
Confidence            65             9999999999999999999999   7877                  89999999999999999 


Q ss_pred             -cCChh-------HHHHhhhchhhHHHHhhhcccccc-------cccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCC
Q 038344          118 -DKQIE-------IWITHITYKSRAIKFFTTSTAIEV-------NAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGN  182 (383)
Q Consensus       118 -~~~~~-------~~~~~l~~~~~~v~~Ll~~~g~d~-------~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~  182 (383)
                       .++.+       +           +++|++. |+++       +.+|.+|+||||+|+.    .++.+++++|+++|++
T Consensus       183 ~~~~~~~~~~~~~i-----------v~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~----~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          183 ADNSPENSALVIHM-----------YDGLLQM-GARLCPTVQLEEISNHQGLTPLKLAAK----EGKIEIFRHILQREFS  246 (256)
T ss_dssp             CCSCHHHHHHHHHH-----------HHHHHHH-HHHHSTTCCGGGCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             ccCCchhhHHHHHH-----------HHHHHHc-CCCcccccccccccCCCCCCHHHHHHH----hCCHHHHHHHHhCCCC
Confidence             77877       7           9999996 9999       9999999999999999    8899999999999987


Q ss_pred             C
Q 038344          183 S  183 (383)
Q Consensus       183 ~  183 (383)
                      .
T Consensus       247 ~  247 (256)
T 2etb_A          247 G  247 (256)
T ss_dssp             H
T ss_pred             C
Confidence            6

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.93  E-value=6.3e-25  Score=190.25  Aligned_cols=142  Identities=26%  Similarity=0.329  Sum_probs=133.1

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC--------------ccccCCCCCcHHHHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------CSATDVDGRNALHLAAM   66 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~--------------~~~~d~~G~tpLh~A~~   66 (383)
                      +||||+|+.   .|+.+++++|++.|+++ +..|..|+||||+|+..|+              ++..|.+|.||||+|+.
T Consensus        40 ~t~L~~A~~---~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  115 (201)
T 3hra_A           40 NTPLNIAVH---NNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAE  115 (201)
T ss_dssp             CCHHHHHHH---HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHH
T ss_pred             CCHHHHHHH---cCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHH
Confidence            599999954   99999999999999998 8889999999999999998              56778899999999999


Q ss_pred             cCCHHHHHHHHHcC-CCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCC-----hhHHHHhhhchhhHHHHhhh
Q 038344           67 EGHIDVLEELVRAK-PDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQ-----IEIWITHITYKSRAIKFFTT  140 (383)
Q Consensus        67 ~g~~~iv~~Ll~~~-~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~-----~~~~~~~l~~~~~~v~~Ll~  140 (383)
                      .|+.+++++|++++ .+                  ++.+|.+|+||||+|+..++     .++           +++|++
T Consensus       116 ~~~~~~v~~Ll~~g~~~------------------~~~~~~~g~t~L~~A~~~~~~~~~~~~~-----------v~~Ll~  166 (201)
T 3hra_A          116 KGHIDNVKLLLEDGRED------------------IDFQNDFGYTALIEAVGLREGNQLYQDI-----------VKLLME  166 (201)
T ss_dssp             TTCHHHHHHHHHHCCCC------------------TTCCCTTSCCHHHHHHHSSCCSHHHHHH-----------HHHHHH
T ss_pred             cCCHHHHHHHHHcCCCC------------------cCCCCCCCCCHHHHHHHhccchhhHHHH-----------HHHHHH
Confidence            99999999999998 55                  89999999999999999998     888           999999


Q ss_pred             cccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhc
Q 038344          141 STAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRAR  180 (383)
Q Consensus       141 ~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~g  180 (383)
                      . |++++.+|.+|.||||+|+.    .++.+++++|+++|
T Consensus       167 ~-ga~~~~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          167 N-GADQSIKDNSGRTAMDYANQ----KGYTEISKILAQYN  201 (201)
T ss_dssp             T-TCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHTCC
T ss_pred             C-CCCCCccCCCCCCHHHHHHH----cCCHhHHHHHHhcC
Confidence            6 99999999999999999999    89999999999887

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.93  E-value=1.3e-25  Score=199.80  Aligned_cols=139  Identities=22%  Similarity=0.298  Sum_probs=116.4

Q ss_pred             ccCCCCCCcHHHHHHHcCC-----------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCch-------
Q 038344           31 RKSDSRKSSALHIASQKGK-----------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA-------   86 (383)
Q Consensus        31 ~~~d~~g~TpLh~Aa~~g~-----------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~-------   86 (383)
                      +..|.+|+||||+|+..|+                 ++.+|.+|+||||+|+..|+.+++++|+++|++....       
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   81 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP   81 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            3568999999999999998                 3567888999999999999999999999999876532       


Q ss_pred             -----------HHHHHhhccCC---cccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccccccc-
Q 038344           87 -----------PLKSFLETREG---SELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNA-  151 (383)
Q Consensus        87 -----------~l~~l~~~~~~---~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~-  151 (383)
                                 .+++|++....   ...++..|..|+||||+|+..|+.++           +++|++. |++++.+|. 
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~-----------v~~Ll~~-g~~~~~~~~~  149 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI-----------VELLVSL-GADVNAQEPC  149 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHH-----------HHHHHHH-TCCTTCCCTT
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-CCCCCCCCCC
Confidence                       45556654322   34478889999999999999999999           9999996 999999998 


Q ss_pred             CCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          152 NGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       152 ~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      .|.||||+|+.    .++.+++++|+++|+++..
T Consensus       150 ~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~~  179 (236)
T 1ikn_D          150 NGRTALHLAVD----LQNPDLVSLLLKCGADVNR  179 (236)
T ss_dssp             TCCCHHHHHHH----TTCHHHHHHHHTTTCCSCC
T ss_pred             CCCCHHHHHHH----cCCHHHHHHHHHcCCCCCc
Confidence            99999999999    8899999999999999854

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.93  E-value=4e-25  Score=210.64  Aligned_cols=160  Identities=22%  Similarity=0.271  Sum_probs=119.6

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC----------------ccccCCCCCcHHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK----------------CSATDVDGRNALHLA   64 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~----------------~~~~d~~G~tpLh~A   64 (383)
                      +||||+|+.   .|+.+++++|++.|+++ +..|..|.||||+|+..|+                ++..|.+|.||||+|
T Consensus       167 ~TpL~~A~~---~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A  242 (373)
T 2fo1_E          167 NTPLMLAVL---ARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV  242 (373)
T ss_dssp             CCHHHHHHH---HTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHH
T ss_pred             CCHHHHHHH---cChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHH
Confidence            599999954   99999999999999998 7889999999999999998                455788999999999


Q ss_pred             HHcC---CHHHHHHHHHcCCCCCc--------------h------------HHHHHhhccCCcccccCCCCCCCcHHHHH
Q 038344           65 AMEG---HIDVLEELVRAKPDAAS--------------A------------PLKSFLETREGSELLNANDDNGMTILHLA  115 (383)
Q Consensus        65 ~~~g---~~~iv~~Ll~~~~~~~~--------------~------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A  115 (383)
                      +..|   +.+++++|+++|++...              +            .+++|++.  .+.++|.+|.+|+||||+|
T Consensus       243 ~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~--~~~~~n~~d~~g~TpL~~A  320 (373)
T 2fo1_E          243 AHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE--KGSNKDKQDEDGKTPIMLA  320 (373)
T ss_dssp             HHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHH--SCCCTTCCCTTCCCHHHHH
T ss_pred             HHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHh--cCCCccCcCCCCCCHHHHH
Confidence            9998   89999999999988542              1            33334431  2245666666666666666


Q ss_pred             HHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCC
Q 038344          116 VADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGN  182 (383)
Q Consensus       116 ~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~  182 (383)
                      +..|+.++           +++|++. |++++.+|..|+||||+|+.    .++.+++++|+++|++
T Consensus       321 ~~~g~~~i-----------v~~Ll~~-gad~~~~d~~g~t~l~~A~~----~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          321 AQEGRIEV-----------VMYLIQQ-GASVEAVDATDHTARQLAQA----NNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             HHHTCHHH-----------HHHHHHT-TCCSSCCCSSSCCHHHHHHH----TTCHHHHHHHHTTC--
T ss_pred             HHcCCHHH-----------HHHHHHc-CCCccCCCCCCCCHHHHHHH----cCCHHHHHHHHhcCcc
Confidence            66666666           6666664 66666666666666666666    5666666666666654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.93  E-value=1e-25  Score=213.70  Aligned_cols=162  Identities=18%  Similarity=0.191  Sum_probs=97.7

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-----------ccc------------------
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-----------CSA------------------   52 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-----------~~~------------------   52 (383)
                      ||||+|+   ..|+.+++++|++.|+++ +..|..|+||||+|+..|+           .+.                  
T Consensus        22 t~L~~Aa---~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~   97 (364)
T 3ljn_A           22 EKIHVAA---RKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKT   97 (364)
T ss_dssp             HHHHHHH---HHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCH
T ss_pred             CHHHHHH---HcCCHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCH
Confidence            7788874   478888888888887776 6777788888888888777           111                  


Q ss_pred             ------------------------------------cCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCch--------
Q 038344           53 ------------------------------------TDVDGRNALHLAAMEG--HIDVLEELVRAKPDAASA--------   86 (383)
Q Consensus        53 ------------------------------------~d~~G~tpLh~A~~~g--~~~iv~~Ll~~~~~~~~~--------   86 (383)
                                                          .|.+|.||||+|+..|  +.+++++|+++|++....        
T Consensus        98 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L  177 (364)
T 3ljn_A           98 DLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPL  177 (364)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred             HHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHH
Confidence                                                4445555555555555  555555555555543211        


Q ss_pred             ----------HHHHHhhccC--CcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCC
Q 038344           87 ----------PLKSFLETRE--GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGF  154 (383)
Q Consensus        87 ----------~l~~l~~~~~--~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~  154 (383)
                                .+++|++...  .+..+|.+|.+|+||||+|+..|+.++           +++|++. |+|+|..|.+|.
T Consensus       178 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~-----------v~~Ll~~-gad~~~~d~~g~  245 (364)
T 3ljn_A          178 MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDV-----------AMRFVEM-GIDVNMEDNEHT  245 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHH-----------HHHHHTT-TCCTTCCCTTSC
T ss_pred             HHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHH-----------HHHHHHc-CCCCCCCCCCCC
Confidence                      3333333211  111255555555555555555555555           6666664 666666666666


Q ss_pred             CHHHHHHhccCCcchhhHHHHHHHhcCCC
Q 038344          155 TAWDILAQSKRDIKYWEIGELLRRARGNS  183 (383)
Q Consensus       155 TpL~~A~~~~~~~~~~~i~~~L~~~ga~~  183 (383)
                      ||||+|+.    .++.+++++|+++|++.
T Consensus       246 tpL~~A~~----~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          246 VPLYLSVR----AAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             CHHHHHHH----TCCHHHHHHHHHHSCHH
T ss_pred             CHHHHHHH----hChHHHHHHHHHcCCch
Confidence            66666666    56666666666666543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=1e-24  Score=211.82  Aligned_cols=153  Identities=24%  Similarity=0.333  Sum_probs=100.2

Q ss_pred             cCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 038344           13 LGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEGHIDVLEELVRA   79 (383)
Q Consensus        13 ~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~   79 (383)
                      .|+.+++++|+++++++ +..+.+|.||||+|+..|+             ++..|.+|.||||+|+..|+.+++++|+++
T Consensus       189 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  267 (437)
T 1n11_A          189 HNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK  267 (437)
T ss_dssp             TTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             cCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhc
Confidence            44444444444444443 3334444444444444444             244555566666666666666666666665


Q ss_pred             CCCCCch------------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhc
Q 038344           80 KPDAASA------------------PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTS  141 (383)
Q Consensus        80 ~~~~~~~------------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~  141 (383)
                      +++....                  .+++|++   .+..+|.+|..|+||||+|+..|+.++           +++|++.
T Consensus       268 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~---~g~~~~~~~~~g~t~L~~A~~~g~~~~-----------v~~Ll~~  333 (437)
T 1n11_A          268 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIK---HGVMVDATTRMGYTPLHVASHYGNIKL-----------VKFLLQH  333 (437)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH---HTCCTTCCCSSCCCHHHHHHHSSCSHH-----------HHHHHHT
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh---CCccCCCCCCCCCCHHHHHHHcCcHHH-----------HHHHHhc
Confidence            5543321                  3334443   455677777777778888777777777           8999886


Q ss_pred             ccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          142 TAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       142 ~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                       |+|+|.+|..|+||||+|+.    .++.+++++|+++|+++..
T Consensus       334 -gad~n~~~~~g~t~L~~A~~----~g~~~iv~~Ll~~ga~~~~  372 (437)
T 1n11_A          334 -QADVNAKTKLGYSPLHQAAQ----QGHTDIVTLLLKNGASPNE  372 (437)
T ss_dssp             -TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSCC
T ss_pred             -CCCCCCCCCCCCCHHHHHHH----CChHHHHHHHHHCcCCCCC
Confidence             89999999999999999998    7888899999999998754

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.93  E-value=1.2e-24  Score=193.25  Aligned_cols=160  Identities=19%  Similarity=0.200  Sum_probs=86.2

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------c-cccCCCCCcHHHHHHHc
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------C-SATDVDGRNALHLAAME   67 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~-~~~d~~G~tpLh~A~~~   67 (383)
                      ||||.|+   ..|+.+++++|++.+.++ +..|..|.||||+|+..|+             . ...+..|.||||+|+..
T Consensus        11 ~~l~~A~---~~g~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~   86 (240)
T 3eu9_A           11 WDIVKAT---QYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ   86 (240)
T ss_dssp             CCHHHHH---HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHH
T ss_pred             hHHHHHH---HcCChHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHc
Confidence            5566653   366666666666666655 5556666666666666665             1 12223355666666666


Q ss_pred             CCHHHHHHHHHcCCCCCch------------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCC-hhHHHHhh
Q 038344           68 GHIDVLEELVRAKPDAASA------------------PLKSFLETREGSELLNANDDNGMTILHLAVADKQ-IEIWITHI  128 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~------------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~-~~~~~~~l  128 (383)
                      |+.+++++|++.|++....                  .+++|++   .+..++.+|.+|.||||+|+..++ .++     
T Consensus        87 ~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~---~~~~~~~~~~~g~t~l~~a~~~~~~~~~-----  158 (240)
T 3eu9_A           87 GHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA---KGQDVDMMDQNGMTPLMWAAYRTHSVDP-----  158 (240)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH---TTCCTTCCCTTSCCHHHHHHHHCCSSTT-----
T ss_pred             CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHh---cCCCccccCCCCCcHHHHHHHhCChHHH-----
Confidence            6666666666655543321                  2333333   344455555555556655554443 444     


Q ss_pred             hchhhHHHHhhhccccccccccc-CCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          129 TYKSRAIKFFTTSTAIEVNAVNA-NGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       129 ~~~~~~v~~Ll~~~g~d~~~~n~-~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                            +++|++. |++++..+. .|.||||+|+.    .++.+++++|+++|+++.
T Consensus       159 ------~~~L~~~-~~~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~  204 (240)
T 3eu9_A          159 ------TRLLLTF-NVSVNLGDKYHKNTALHWAVL----AGNTTVISLLLEAGANVD  204 (240)
T ss_dssp             ------HHHHHHT-TCCTTCCCTTTCCCHHHHHHH----HTCHHHHHHHHHHTCCTT
T ss_pred             ------HHHHHhc-CCCcchhhccCCCcHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence                  4555543 555555554 55555555555    445555555555555554

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.92  E-value=3.1e-24  Score=195.36  Aligned_cols=168  Identities=21%  Similarity=0.229  Sum_probs=140.3

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEG   68 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g   68 (383)
                      ||||.|+   ..|+.+++++|++.++++....+..|+||||+|+..|+             ++.+|.+|.||||+|+..|
T Consensus         7 ~~L~~A~---~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (285)
T 1wdy_A            7 HLLIKAV---QNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHH---HTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             hHHHHHH---HcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence            7899995   49999999999999999854458899999999999998             5678899999999999999


Q ss_pred             CHHHHHHHHHcCCCCCch------------------HHHHHhhccCCcccccCC----------CCCCCcHHHHHHHcCC
Q 038344           69 HIDVLEELVRAKPDAASA------------------PLKSFLETREGSELLNAN----------DDNGMTILHLAVADKQ  120 (383)
Q Consensus        69 ~~~iv~~Ll~~~~~~~~~------------------~l~~l~~~~~~~~~~n~~----------d~~g~TpLh~A~~~~~  120 (383)
                      +.+++++|+++|++....                  .+++|++   .+..++.+          |..|.||||+|+..|+
T Consensus        84 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~---~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  160 (285)
T 1wdy_A           84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK---RGANVNLRRKTKEDQERLRKGGATALMDAAEKGH  160 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH---TTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHH---hCCCcccccccHHHHHhhccCCCcHHHHHHHcCC
Confidence            999999999999876532                  4555665   45556655          7889999999999999


Q ss_pred             hhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCCC
Q 038344          121 IEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAKD  186 (383)
Q Consensus       121 ~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~~  186 (383)
                      .++           +++|++..|++++..|..|.||||+|+.........+++++|+++|+++...
T Consensus       161 ~~~-----------v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~  215 (285)
T 1wdy_A          161 VEV-----------LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR  215 (285)
T ss_dssp             HHH-----------HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCC
T ss_pred             HHH-----------HHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCc
Confidence            999           8888886688899889999999999888433333378888999998887543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.92  E-value=9e-25  Score=192.98  Aligned_cols=155  Identities=18%  Similarity=0.209  Sum_probs=130.8

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcC--CcccccCCCCCCcHHHHHHHcCC---------------ccccCCCCCcHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQK--PELARKSDSRKSSALHIASQKGK---------------CSATDVDGRNALHL   63 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~--~~~~~~~d~~g~TpLh~Aa~~g~---------------~~~~d~~G~tpLh~   63 (383)
                      +||||+|+.   .|+.+++++|++.+  +++....|..|+||||+|+..|+               ++..|.+|.||||+
T Consensus        37 ~t~L~~A~~---~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~  113 (228)
T 2dzn_A           37 RIPLHWSVS---FQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL  113 (228)
T ss_dssp             CCHHHHHHH---TTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHH
T ss_pred             CCHHHHHHH---cCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHH
Confidence            589999954   99999999999999  66644378999999999999988               35567889999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCch------------------HHHHHhhccCCc-ccccCCCCCCCcHHHHHHHcCChhHH
Q 038344           64 AAMEGHIDVLEELVRAKPDAASA------------------PLKSFLETREGS-ELLNANDDNGMTILHLAVADKQIEIW  124 (383)
Q Consensus        64 A~~~g~~~iv~~Ll~~~~~~~~~------------------~l~~l~~~~~~~-~~~n~~d~~g~TpLh~A~~~~~~~~~  124 (383)
                      |+..|+.+++++|+++|.+....                  .+++|++   .+ .++|.+|.+|+||||+|+..|+.++ 
T Consensus       114 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~---~g~~~~~~~d~~g~t~L~~A~~~~~~~~-  189 (228)
T 2dzn_A          114 AVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG---LGKSAVNWQDKQGWTPLFHALAEGHGDA-  189 (228)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT---TTCCCSCCCCTTSCCHHHHHHHTTCHHH-
T ss_pred             HHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh---cCcccccCcCCCCCCHHHHHHHcCCHHH-
Confidence            99999999999999998876432                  4455554   55 7799999999999999999999999 


Q ss_pred             HHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHh
Q 038344          125 ITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRA  179 (383)
Q Consensus       125 ~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~  179 (383)
                                +++|+++.|+|++.+|.+|.||+|+|..       .++.++|+++
T Consensus       190 ----------v~~Ll~~~ga~~~~~~~~g~t~l~~A~~-------~~~~~~l~~~  227 (228)
T 2dzn_A          190 ----------AVLLVEKYGAEYDLVDNKGAKAEDVALN-------EQVKKFFLNN  227 (228)
T ss_dssp             ----------HHHHHHHHCCCSCCBCTTSCBGGGGCSS-------TTHHHHHHTT
T ss_pred             ----------HHHHHHhcCCCCCccCCCCCcHHHHHHH-------HHHHHHHHhc
Confidence                      9999944599999999999999999976       3567777653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.92  E-value=2.4e-24  Score=191.51  Aligned_cols=151  Identities=21%  Similarity=0.213  Sum_probs=131.7

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC--------------ccccCCCCCcHHHHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------CSATDVDGRNALHLAAM   66 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~--------------~~~~d~~G~tpLh~A~~   66 (383)
                      +||||+|+.   .|+.+++++|++.+.++ +..|..|.||||+|+..|+              ++..|..|.||||+|+.
T Consensus        45 ~t~L~~A~~---~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  120 (237)
T 3b7b_A           45 RTPLMEAAE---NNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE  120 (237)
T ss_dssp             CCHHHHHHH---TTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHH---hCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHH
Confidence            589999954   99999999999999987 7889999999999999998              45677889999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCch------------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhh
Q 038344           67 EGHIDVLEELVRAKPDAASA------------------PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHI  128 (383)
Q Consensus        67 ~g~~~iv~~Ll~~~~~~~~~------------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l  128 (383)
                      .|+.+++++|+++|++....                  .+++|++   .+.+++.+|..|+||||+|+..|+.++     
T Consensus       121 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~---~g~~~~~~~~~g~t~L~~A~~~~~~~~-----  192 (237)
T 3b7b_A          121 YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA---AKCDLHAVNIHGDSPLHIAARENRYDC-----  192 (237)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHT---TTCCTTCCCTTCCCHHHHHHHTTCHHH-----
T ss_pred             cCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHH---cCCCCCCcCCCCCCHHHHHHHhCCHhH-----
Confidence            99999999999999876432                  3445554   678899999999999999999999999     


Q ss_pred             hchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHH
Q 038344          129 TYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGE  174 (383)
Q Consensus       129 ~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~  174 (383)
                            +++|++. |+|++.+|.+|+||||+|+.    .++.+.+.
T Consensus       193 ------v~~Ll~~-gad~~~~d~~g~t~l~~A~~----~~~~~~~~  227 (237)
T 3b7b_A          193 ------VVLFLSR-DSDVTLKNKEGETPLQCASL----NSQVWSAL  227 (237)
T ss_dssp             ------HHHHHTT-TCCTTCCCTTSCCHHHHSCT----TCHHHHHH
T ss_pred             ------HHHHHHc-CCCCCccCCCCCCHHHHHHH----HHHHHHHH
Confidence                  9999996 99999999999999999998    55554333

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.92  E-value=2.5e-25  Score=204.17  Aligned_cols=159  Identities=16%  Similarity=0.110  Sum_probs=131.1

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||+|+.   .|+.+++++|++.|+++ +..  +|+||||+|+..|+             ++.+|.+|+||||+|+..
T Consensus        32 ~t~L~~A~~---~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~  105 (285)
T 3kea_A           32 HSASYYAIA---DNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDS  105 (285)
T ss_dssp             CCHHHHHHH---TTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCHHHHHHH---cCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHc
Confidence            589999954   99999999999999887 444  48999999999998             567888999999999999


Q ss_pred             CCHHHHHHHHHcCCCCC-------ch------------HHHHHhhccCCcccccCCCC-CCCcHHHHHHHcCChhHHHHh
Q 038344           68 GHIDVLEELVRAKPDAA-------SA------------PLKSFLETREGSELLNANDD-NGMTILHLAVADKQIEIWITH  127 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~-------~~------------~l~~l~~~~~~~~~~n~~d~-~g~TpLh~A~~~~~~~~~~~~  127 (383)
                      |+.+++++|+++|++..       .+            .+++|++   .+...  .|. .|+||||+|+..|+.++    
T Consensus       106 g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~---~g~~~--~~~~~g~t~L~~A~~~g~~~~----  176 (285)
T 3kea_A          106 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS---EIPST--FDLAILLSCIHITIKNGHVDM----  176 (285)
T ss_dssp             TCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHT---TSCTT--CCCSTHHHHHHHHHHTTCHHH----
T ss_pred             CCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHh---CCCcc--ccccCCccHHHHHHHcChHHH----
Confidence            99999999999987743       22            3344444   22222  333 78888888888888888    


Q ss_pred             hhchhhHHHHhhhcccccccccccCCCCH-HHHHHhccCCcchhhHHHHHHHhcCCCCCC
Q 038344          128 ITYKSRAIKFFTTSTAIEVNAVNANGFTA-WDILAQSKRDIKYWEIGELLRRARGNSAKD  186 (383)
Q Consensus       128 l~~~~~~v~~Ll~~~g~d~~~~n~~G~Tp-L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~  186 (383)
                             +++|++. |++++.+|..|+|| ||+|+.    .++.+++++|+++|+++...
T Consensus       177 -------v~~Ll~~-gad~n~~~~~g~t~~L~~A~~----~~~~~~v~~Ll~~gad~~~~  224 (285)
T 3kea_A          177 -------MILLLDY-MTSTNTNNSLLFIPDIKLAID----NKDIEMLQALFKYDINIYSA  224 (285)
T ss_dssp             -------HHHHHHH-HHHTCTTCCCBCCTTHHHHHH----HTCHHHHHHHTTSCBCSTTT
T ss_pred             -------HHHHHHc-CCCCCcccCCCCChHHHHHHH----cCCHHHHHHHHHcCCCCCCC
Confidence                   9999996 99999999999997 999999    78899999999999998653

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.92  E-value=8e-25  Score=197.19  Aligned_cols=149  Identities=19%  Similarity=0.188  Sum_probs=127.3

Q ss_pred             CChHHHHHHHHHcCCHH----HHHHHHhcCCccccc----CCCCCCcHHHHHHHc---CC-------------cc-----
Q 038344            1 MTILQLAVAAALLGHED----FVNEILCQKPELARK----SDSRKSSALHIASQK---GK-------------CS-----   51 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~----~v~~Ll~~~~~~~~~----~d~~g~TpLh~Aa~~---g~-------------~~-----   51 (383)
                      +||||.|+.   .|+.+    ++++|++.+.++ +.    .|.+|+||||+|+..   |+             .+     
T Consensus         3 ~t~L~~A~~---~g~~~~v~~ll~~l~~~g~~i-~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   78 (256)
T 2etb_A            3 RDRLFSVVS---RGVPEELTGLLEYLRWNSKYL-TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL   78 (256)
T ss_dssp             HHHHHHHHH---HTCGGGGTTHHHHHHHHTCCT-TSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred             ccHHHHHHH---cCCHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence            489999954   89997    667777789988 55    799999999999999   87             11     


Q ss_pred             ------ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCC-------------CCcHH
Q 038344           52 ------ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDN-------------GMTIL  112 (383)
Q Consensus        52 ------~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~-------------g~TpL  112 (383)
                            .+|.+|.||||+|+..|+.+++++|+++|++                  +|.+|..             |+|||
T Consensus        79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------------------~~~~~~~~~~~~~~~~~~~~g~tpL  140 (256)
T 2etb_A           79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD------------------VHLRACGRFFQKHQGTCFYFGELPL  140 (256)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC------------------TTCCCCSGGGSCCSSSCCCSCSSHH
T ss_pred             cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC------------------CCcccccccccccccccccCCCCHH
Confidence                  1346799999999999999999999999988                  6777765             99999


Q ss_pred             HHHHHcCChhHHHHhhhchhhHHHHhhhc--ccccccccccCCCCHHHHHHhccCCcchhh-------HHHHHHHhcCCC
Q 038344          113 HLAVADKQIEIWITHITYKSRAIKFFTTS--TAIEVNAVNANGFTAWDILAQSKRDIKYWE-------IGELLRRARGNS  183 (383)
Q Consensus       113 h~A~~~~~~~~~~~~l~~~~~~v~~Ll~~--~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~-------i~~~L~~~ga~~  183 (383)
                      |+|+..|+.++           +++|++.  .|+|+|.+|.+|+||||+|+...  .++.+       ++++|+++|+++
T Consensus       141 ~~A~~~~~~~~-----------v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~--~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          141 SLAACTKQWDV-----------VTYLLENPHQPASLEATDSLGNTVLHALVMIA--DNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             HHHHHTTCHHH-----------HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHH-----------HHHHHhccccCCCcCccCCCCCCHHHHHHHcc--cCCchhhHHHHHHHHHHHHcCCCc
Confidence            99999999999           9999993  39999999999999999999722  23445       999999999987


Q ss_pred             C
Q 038344          184 A  184 (383)
Q Consensus       184 ~  184 (383)
                      .
T Consensus       208 ~  208 (256)
T 2etb_A          208 C  208 (256)
T ss_dssp             S
T ss_pred             c
Confidence            3

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.92  E-value=4e-24  Score=207.59  Aligned_cols=162  Identities=23%  Similarity=0.359  Sum_probs=133.1

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||+|+   ..|+.+++++|+++++++ +..|..|.||||+|+..|+             ++.+|.+|+||||+|+..
T Consensus        15 ~t~L~~Aa---~~g~~~~v~~Ll~~g~~~-~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   90 (437)
T 1n11_A           15 LTPLHVAS---FMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI   90 (437)
T ss_dssp             CCHHHHHH---HHTCHHHHHHHHHTTCCS-CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHH
T ss_pred             CCHHHHHH---HCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHC
Confidence            59999995   499999999999999988 7889999999999999998             567888999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCch------------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhh
Q 038344           68 GHIDVLEELVRAKPDAASA------------------PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHIT  129 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~------------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~  129 (383)
                      |+.+++++|+++|++....                  .++.|++   .+...+..+..|.||||+|+..|+.++      
T Consensus        91 g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~~~~~g~t~L~~A~~~g~~~~------  161 (437)
T 1n11_A           91 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE---KEASQACMTKKGFTPLHVAAKYGKVRV------  161 (437)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH---TTCCSCCCCTTSCCHHHHHHHTTCHHH------
T ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh---CCCCCcCCCCCCCCHHHHHHHcCCHHH------
Confidence            9999999999998875422                  3444444   455667777888888888888888888      


Q ss_pred             chhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          130 YKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       130 ~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                           +++|++. |++++..|.+|.||||+|+.    .++.+++++|+++|+++..
T Consensus       162 -----v~~Ll~~-g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~~  207 (437)
T 1n11_A          162 -----AELLLER-DAHPNAAGKNGLTPLHVAVH----HNNLDIVKLLLPRGGSPHS  207 (437)
T ss_dssp             -----HHHHHHT-TCCTTCCCSSCCCHHHHHHH----TTCHHHHHHHGGGTCCSCC
T ss_pred             -----HHHHHhC-CCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHhCCCCCCC
Confidence                 8888875 88888888888888888887    6777888888888877643

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.92  E-value=2.1e-24  Score=197.99  Aligned_cols=156  Identities=19%  Similarity=0.221  Sum_probs=133.0

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||+|+.   .|+.+++++|++.++++ +..|.+|+||||+|+..|+             ++ .+.+|.||||+|+..
T Consensus        93 ~t~L~~A~~---~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~  167 (285)
T 3d9h_A           93 VSPLHEACL---GGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARR  167 (285)
T ss_dssp             CCHHHHHHH---TTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS-CSCTTSCHHHHHHHH
T ss_pred             CCHHHHHHH---CCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHc
Confidence            599999954   99999999999999998 8889999999999999998             22 355699999999999


Q ss_pred             CCHHHHHHHHHcCCCCCch------------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhh
Q 038344           68 GHIDVLEELVRAKPDAASA------------------PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHIT  129 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~------------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~  129 (383)
                      |+.+++++|+++|++....                  .+++|++   .+.++| .|..|+||||+|+..|+.++      
T Consensus       168 g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~---~ga~~~-~~~~g~t~L~~A~~~~~~~~------  237 (285)
T 3d9h_A          168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE---SGADVN-QGKGQDSPLHAVVRTASEEL------  237 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH---TTCCTT-CCBTTBCHHHHHHHTTCHHH------
T ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH---CCCCCC-CCCCCCCHHHHHHHcCCHHH------
Confidence            9999999999998876532                  4566665   566777 48999999999999999999      


Q ss_pred             chhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHh-cCCC
Q 038344          130 YKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRA-RGNS  183 (383)
Q Consensus       130 ~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~-ga~~  183 (383)
                           +++|++. |+|++.+|.+|+||||+|+.      +.+++++|+++ |++.
T Consensus       238 -----v~~Ll~~-gad~~~~d~~g~t~l~~A~~------~~~~~~~Ll~~~~a~l  280 (285)
T 3d9h_A          238 -----ACLLMDF-GADTQAKNAEGKRPVELVPP------ESPLAQLFLEREGASL  280 (285)
T ss_dssp             -----HHHHHHT-TCCTTCCCTTSCCGGGGSCT------TSHHHHHHHHHC----
T ss_pred             -----HHHHHHC-CCCCCCcCCCCCCHHHHhcC------ccHHHHHHHHhhccCC
Confidence                 9999996 99999999999999999985      35799999998 6665

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.91  E-value=3.8e-24  Score=200.83  Aligned_cols=163  Identities=25%  Similarity=0.238  Sum_probs=127.1

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEG   68 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g   68 (383)
                      |+||.|   +..|+.+.++.++...+...+..|..|+||||+|+..|+             ++.+|.+|+||||+|+..|
T Consensus        26 ~~L~~A---~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  102 (351)
T 3utm_A           26 DELLEA---ARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYG  102 (351)
T ss_dssp             HHHHHH---HHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             hhHHHH---HHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCC
Confidence            688998   459999999999988554458899999999999999999             6778999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCch------------------HHHHHhhccCCcccccC---------------------------
Q 038344           69 HIDVLEELVRAKPDAASA------------------PLKSFLETREGSELLNA---------------------------  103 (383)
Q Consensus        69 ~~~iv~~Ll~~~~~~~~~------------------~l~~l~~~~~~~~~~n~---------------------------  103 (383)
                      +.+++++|+++|++....                  .+++|++.   +..++.                           
T Consensus       103 ~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~  179 (351)
T 3utm_A          103 HYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH---GADPTLVNCHGKSAVDMAPTPELRERLTYEFKG  179 (351)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCccccCCCCcchHHHhhhhhHHHHHhhhcc
Confidence            999999999998874321                  23333332   111211                           


Q ss_pred             ---------------------------CCCCCCcHHHHHHHc---CChhHHHHhhhchhhHHHHhhhcccccccccccCC
Q 038344          104 ---------------------------NDDNGMTILHLAVAD---KQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANG  153 (383)
Q Consensus       104 ---------------------------~d~~g~TpLh~A~~~---~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G  153 (383)
                                                 .+..|+||||+|+..   ++.++           +++|++. |+++|.+|.+|
T Consensus       180 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~-----------~~~Ll~~-g~~~~~~~~~g  247 (351)
T 3utm_A          180 HSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQV-----------AELLLRK-GANVNEKNKDF  247 (351)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHH-----------HHHHHHT-TCCTTCCCTTC
T ss_pred             cHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHH-----------HHHHHHc-CCCcCCcCCCC
Confidence                                       223444555555554   22344           8889886 99999999999


Q ss_pred             CCHHHHHHhccCCcchhhHHHHHHHhcCCCCCC
Q 038344          154 FTAWDILAQSKRDIKYWEIGELLRRARGNSAKD  186 (383)
Q Consensus       154 ~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~~  186 (383)
                      .||||+|+.    .++.+++++|+++|++++..
T Consensus       248 ~t~L~~A~~----~g~~~~v~~Ll~~ga~~n~~  276 (351)
T 3utm_A          248 MTPLHVAAE----RAHNDVMEVLHKHGAKMNAL  276 (351)
T ss_dssp             CCHHHHHHH----TTCHHHHHHHHHTTCCTTCC
T ss_pred             CCHHHHHHH----cCCHHHHHHHHHCCCCCCCc
Confidence            999999999    88899999999999998643

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.91  E-value=3.6e-25  Score=197.77  Aligned_cols=146  Identities=23%  Similarity=0.241  Sum_probs=107.0

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||.|+.   .|+.+.++.|+++|.++ +. +..|.||||.|+..|+             ++.+|.+|+||||+|+..
T Consensus         6 ~t~L~~a~~---~~~~~~~~~ll~~g~~~-~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            6 QVSLPPGKR---TNLRKTGSERIAHGMRV-KF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             cccCchhhh---hhhHHHHHHHhccCCCc-cc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            599999954   89999999999999988 43 5788999999999998             677899999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccc
Q 038344           68 GHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVN  147 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~  147 (383)
                      |+.+++++|+++|++                  +|.+|.+|+||||+|+..|+.++           +++|++. |++++
T Consensus        81 g~~~~v~~Ll~~ga~------------------~~~~d~~g~tpL~~A~~~~~~~~-----------v~~Ll~~-ga~~~  130 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVN------------------VNAADSDGWTPLHCAASCNNVQV-----------CKFLVES-GAAVF  130 (239)
T ss_dssp             TCHHHHHHHHHHTCC------------------TTCCCTTCCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTT
T ss_pred             CCHHHHHHHHHcCCC------------------CCccCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-CCCcc
Confidence            999999999999888                  89999999999999999999999           9999996 99999


Q ss_pred             ccccCCC-CHHHHH--HhccCCcchhhHHHHHHHhcCCCCC
Q 038344          148 AVNANGF-TAWDIL--AQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       148 ~~n~~G~-TpL~~A--~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      ..|..|. ||||+|  +.    .++.+++++|+++|++...
T Consensus       131 ~~~~~~~~t~l~~a~~~~----~g~~~~~~~Ll~~~a~~~~  167 (239)
T 1ycs_B          131 AMTYSDMQTAADKCEEME----EGYTQCSQFLYGVQEKMGI  167 (239)
T ss_dssp             CCCSSSCCCHHHHCCSSS----TTCCCHHHHHHHHHHHTTT
T ss_pred             eecCCCCcchHHHHHHhh----hccHHHHHHHHHhhhcccc
Confidence            9998887 999998  44    6789999999999998753

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.91  E-value=1.4e-24  Score=191.12  Aligned_cols=153  Identities=22%  Similarity=0.290  Sum_probs=131.4

Q ss_pred             CCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 038344           14 GHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEGHIDVLEELVRAK   80 (383)
Q Consensus        14 g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~   80 (383)
                      |+.+++++|+++++++.+..|.+|+||||+|+..|+             ++.+|.+|+||||+|+..|+.+++++|++++
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~   81 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR   81 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            778899999999999977779999999999999999             6678899999999999999999999999988


Q ss_pred             C-CCCc------h------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhc
Q 038344           81 P-DAAS------A------------PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTS  141 (383)
Q Consensus        81 ~-~~~~------~------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~  141 (383)
                      + +...      +            .+++|++   .+..++.+|.+|+||||+|+..|+.++           +++|++.
T Consensus        82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~---~g~~~~~~~~~g~t~L~~A~~~~~~~~-----------v~~Ll~~  147 (223)
T 2f8y_A           82 ATDLDARMHDGTTPLILAARLAVEGMLEDLIN---SHADVNAVDDLGKSALHWAAAVNNVDA-----------AVVLLKN  147 (223)
T ss_dssp             TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH---TTCCTTCBCTTSCBHHHHHHHTTCHHH-----------HHHHHHT
T ss_pred             CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHH---cCCCCcCcCCCCCcHHHHHHHcCCHHH-----------HHHHHHc
Confidence            7 3221      1            4455555   677788999999999999999999999           9999996


Q ss_pred             ccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          142 TAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       142 ~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                       |++++..|..|.||||+|+.    .++.+++++|+++|+++..
T Consensus       148 -g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~  186 (223)
T 2f8y_A          148 -GANKDMQNNREETPLFLAAR----EGSYETAKVLLDHFANRDI  186 (223)
T ss_dssp             -TCCTTCCCTTCCCHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             -CCCCCCcCCCCcCHHHHHHH----cCCHHHHHHHHHcCCCCcc
Confidence             99999999999999999998    7888999999999998743

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.91  E-value=1e-24  Score=207.85  Aligned_cols=163  Identities=17%  Similarity=0.223  Sum_probs=138.5

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHH--------hcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCc
Q 038344            1 MTILQLAVAAALLGHEDFVNEIL--------CQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRN   59 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll--------~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~t   59 (383)
                      +||||+|   +..|+.++++.|+        +.|.++ +..|.+|+||||+|+..|+             ++.+|.+|.|
T Consensus       126 ~t~Lh~A---a~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t  201 (373)
T 2fo1_E          126 RTVLHWI---ASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS  201 (373)
T ss_dssp             CCHHHHH---HCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCC
T ss_pred             CCHHHHH---HHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCC
Confidence            5999999   4589988877776        778887 8889999999999999999             5778899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcC---CCCCc------h---------------HHHHHhhccCCccccc--------CCCCC
Q 038344           60 ALHLAAMEGHIDVLEELVRAK---PDAAS------A---------------PLKSFLETREGSELLN--------ANDDN  107 (383)
Q Consensus        60 pLh~A~~~g~~~iv~~Ll~~~---~~~~~------~---------------~l~~l~~~~~~~~~~n--------~~d~~  107 (383)
                      |||+|+..|+.+++++|++++   .+...      +               .+++|++   .+..++        .+|..
T Consensus       202 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~---~g~~~~~~~~~~~~~~d~~  278 (373)
T 2fo1_E          202 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVE---KGAKVDYDGAARKDSEKYK  278 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHH---HTCCSSCCSGGGTSSSSCC
T ss_pred             HHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHH---CCCCcccccccccCccccc
Confidence            999999999999999999876   23221      1               3445555   344444        37789


Q ss_pred             CCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          108 GMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       108 g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      |+||||+|+..|+.++           +++|++..|+++|.+|.+|.||||+|+.    .++.+++++|+++|++.+.
T Consensus       279 g~t~Lh~A~~~g~~~~-----------v~~Ll~~~~~~~n~~d~~g~TpL~~A~~----~g~~~iv~~Ll~~gad~~~  341 (373)
T 2fo1_E          279 GRTALHYAAQVSNMPI-----------VKYLVGEKGSNKDKQDEDGKTPIMLAAQ----EGRIEVVMYLIQQGASVEA  341 (373)
T ss_dssp             CCCTHHHHHSSCCHHH-----------HHHHHHHSCCCTTCCCTTCCCHHHHHHH----HTCHHHHHHHHHTTCCSSC
T ss_pred             CCCHHHHHHHhCCHHH-----------HHHHHHhcCCCccCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCccC
Confidence            9999999999999999           9999987569999999999999999999    8899999999999999753

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.91  E-value=1.6e-24  Score=202.86  Aligned_cols=141  Identities=21%  Similarity=0.206  Sum_probs=121.0

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-----------------ccccCCCCCcHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-----------------CSATDVDGRNALHL   63 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-----------------~~~~d~~G~tpLh~   63 (383)
                      +||||+|+   ..|+.+++++|+++|+++ +.+|.+|+||||+|+..|+                 ++.+|.+|+||||+
T Consensus       132 ~TpLh~Aa---~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~  207 (327)
T 1sw6_A          132 NTPLHWLT---SIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH  207 (327)
T ss_dssp             CCHHHHHH---HTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHH
T ss_pred             CcHHHHHH---HcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHH
Confidence            59999995   499999999999999998 8899999999999999764                 66789999999999


Q ss_pred             HHH----cCCHHHHHHHHHc--------------------CCCCCch------H------HHHHhhccCCcccccCCCCC
Q 038344           64 AAM----EGHIDVLEELVRA--------------------KPDAASA------P------LKSFLETREGSELLNANDDN  107 (383)
Q Consensus        64 A~~----~g~~~iv~~Ll~~--------------------~~~~~~~------~------l~~l~~~~~~~~~~n~~d~~  107 (383)
                      |++    .|+.+++++|++.                    +.+....      +      +++|++.     .+|.+|.+
T Consensus       208 A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~-----~~n~~d~~  282 (327)
T 1sw6_A          208 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN-----MLNAQDSN  282 (327)
T ss_dssp             HHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH-----TTTCCCTT
T ss_pred             HHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHh-----CCCCCCCC
Confidence            999    8999999999987                    3332221      2      3444442     48999999


Q ss_pred             CCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHh
Q 038344          108 GMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQ  162 (383)
Q Consensus       108 g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~  162 (383)
                      |+||||+|+..|+.++           +++|++. |+|++.+|.+|+||||+|+.
T Consensus       283 G~TpLh~A~~~g~~~~-----------v~~Ll~~-Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          283 GDTCLNIAARLGNISI-----------VDALLDY-GADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             SCCHHHHHHHHCCHHH-----------HHHHHHT-TCCTTCCCTTSCCGGGGTCC
T ss_pred             CCCHHHHHHHcCCHHH-----------HHHHHHc-CCCCcccCCCCCCHHHHHHh
Confidence            9999999999999999           9999996 99999999999999999986

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.91  E-value=1.6e-24  Score=198.89  Aligned_cols=135  Identities=19%  Similarity=0.147  Sum_probs=109.8

Q ss_pred             cCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-----------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 038344           13 LGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-----------CSATDVDGRNALHLAAMEGHIDVLEELVRAKP   81 (383)
Q Consensus        13 ~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-----------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~   81 (383)
                      ..+.+.+..++..+ ++ +.+|.+|+||||+|+..|+           .+....+|+||||+|+..|+.+++++|+++|+
T Consensus         9 ~~~~~~v~~lL~~~-~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga   86 (285)
T 3kea_A            9 TWKSKQLKSFLSSK-DT-FKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGL   86 (285)
T ss_dssp             GCCHHHHHHHHHST-TT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTC
T ss_pred             hcCHHHHHHHHHhC-CC-CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            45555555555554 34 7889999999999999999           23333469999999999999999999999998


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCC-CCHHHHH
Q 038344           82 DAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANG-FTAWDIL  160 (383)
Q Consensus        82 ~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G-~TpL~~A  160 (383)
                      +                  +|.+|..|+||||+|+..|+.++           +++|++. |++++..|..| .||||+|
T Consensus        87 ~------------------~~~~d~~g~t~L~~A~~~g~~~~-----------v~~Ll~~-ga~~~~~~~~g~~t~L~~A  136 (285)
T 3kea_A           87 D------------------DSQFDDKGNTALYYAVDSGNMQT-----------VKLFVKK-NWRLMFYGKTGWKTSFYHA  136 (285)
T ss_dssp             C------------------TTCCCTTSCCHHHHHHHTTCHHH-----------HHHHHHH-CGGGGGCSSSGGGSHHHHH
T ss_pred             C------------------CCCcCCCCCcHHHHHHHcCCHHH-----------HHHHHhc-CCCCCccCCCCCCCHHHHH
Confidence            8                  77788888888888888888888           8888886 88888888888 7888888


Q ss_pred             HhccCCcchhhHHHHHHHhcCCC
Q 038344          161 AQSKRDIKYWEIGELLRRARGNS  183 (383)
Q Consensus       161 ~~~~~~~~~~~i~~~L~~~ga~~  183 (383)
                      +.    .++.+++++|+++|++.
T Consensus       137 ~~----~~~~~~v~~Ll~~g~~~  155 (285)
T 3kea_A          137 VM----LNDVSIVSYFLSEIPST  155 (285)
T ss_dssp             HH----TTCHHHHHHHHTTSCTT
T ss_pred             HH----cCCHHHHHHHHhCCCcc
Confidence            88    67778888888888776

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=1.6e-24  Score=176.22  Aligned_cols=123  Identities=20%  Similarity=0.234  Sum_probs=109.1

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAK   80 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~   80 (383)
                      +||||+|+.   .|+.+++++|+++++++                     +.+|.+|+||||+|+. |+.+++++|+++|
T Consensus        13 ~t~L~~A~~---~~~~~~v~~Ll~~g~~~---------------------~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g   67 (136)
T 1d9s_A           13 DAGLATAAA---RGQVETVRQLLEAGADP---------------------NALNRFGRRPIQVMMM-GSAQVAELLLLHG   67 (136)
T ss_dssp             SCHHHHHHH---TTCHHHHHHHHHTTCCT---------------------TCCCTTCCTTTTTSTT-SCHHHHHHHHHHT
T ss_pred             ccHHHHHHH---cCCHHHHHHHHHcCCCc---------------------CCcCCCCCCHHHHHHc-CCHHHHHHHHHCC
Confidence            477777743   77777777777777665                     3457788999999999 9999999999999


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCC-CCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHH
Q 038344           81 PDAASAPLKSFLETREGSELLNANDDN-GMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI  159 (383)
Q Consensus        81 ~~~~~~~l~~l~~~~~~~~~~n~~d~~-g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~  159 (383)
                      ++                  +|.+|.. |+||||+|+..|+.++           +++|++. |++++.+|.+|.||||+
T Consensus        68 ~~------------------~~~~~~~~g~t~L~~A~~~~~~~~-----------v~~Ll~~-ga~~~~~d~~g~tpl~~  117 (136)
T 1d9s_A           68 AE------------------PNCADPATLTRPVHDAAREGFLDT-----------LVVLHRA-GARLDVCDAWGRLPVDL  117 (136)
T ss_dssp             CC------------------SSCCBTTTTBCHHHHHHHHTCHHH-----------HHHHHHT-CCCCCCCSSSSSCHHHH
T ss_pred             CC------------------CCCcCCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-CCCCCccCCCCCCHHHH
Confidence            88                  8999999 9999999999999999           9999996 99999999999999999


Q ss_pred             HHhccCCcchhhHHHHHHHhcCC
Q 038344          160 LAQSKRDIKYWEIGELLRRARGN  182 (383)
Q Consensus       160 A~~~~~~~~~~~i~~~L~~~ga~  182 (383)
                      |+.    .++.+++++|+++|++
T Consensus       118 A~~----~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A          118 AEE----QGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHH----HTCHHHHHHHHHHHCC
T ss_pred             HHH----cCCHHHHHHHHHcCCC
Confidence            999    7889999999999986

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.91  E-value=2.3e-24  Score=196.10  Aligned_cols=148  Identities=20%  Similarity=0.220  Sum_probs=125.5

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhc----CCcccc---cCCCCCCcHHHHHHHc---CC-------c-------------
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQ----KPELAR---KSDSRKSSALHIASQK---GK-------C-------------   50 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~----~~~~~~---~~d~~g~TpLh~Aa~~---g~-------~-------------   50 (383)
                      +||||.|+   ..|+.++++.|++.    +.++.+   ..|..|+||||+|+..   |+       +             
T Consensus        14 ~t~L~~A~---~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i   90 (273)
T 2pnn_A           14 RRSIFDAV---AQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFV   90 (273)
T ss_dssp             HHHHHHHH---HTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHH
T ss_pred             chHHHHHH---HcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHh
Confidence            38999995   49999999988874    444421   4588999999999986   66       1             


Q ss_pred             c----ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCC--------------CCCcHH
Q 038344           51 S----ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDD--------------NGMTIL  112 (383)
Q Consensus        51 ~----~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~--------------~g~TpL  112 (383)
                      +    ..|.+|+||||+|+..|+.+++++|+++|++                  +|.+|.              +|+|||
T Consensus        91 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~------------------~~~~~~~~~~~~~~~~~~~~~g~tpL  152 (273)
T 2pnn_A           91 NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD------------------VQAAANGDFFKKTKGRPGFYFGELPL  152 (273)
T ss_dssp             TCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC------------------TTCCBCSGGGSSCSSSCCCCSCBSHH
T ss_pred             hcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC------------------cCccccccccccccccccccCCCCHH
Confidence            1    1566899999999999999999999999988                  666665              899999


Q ss_pred             HHHHHcCChhHHHHhhhchhhHHHHhhhc--ccccccccccCCCCHHHHHHhccCCcch---------hhHHHHHHHhcC
Q 038344          113 HLAVADKQIEIWITHITYKSRAIKFFTTS--TAIEVNAVNANGFTAWDILAQSKRDIKY---------WEIGELLRRARG  181 (383)
Q Consensus       113 h~A~~~~~~~~~~~~l~~~~~~v~~Ll~~--~g~d~~~~n~~G~TpL~~A~~~~~~~~~---------~~i~~~L~~~ga  181 (383)
                      |+|+..|+.++           +++|++.  .|++++.+|.+|+||||+|+.    .++         .+++++|+++|+
T Consensus       153 ~~A~~~g~~~~-----------v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~----~~~~~~~~~~~~~~~v~~Ll~~ga  217 (273)
T 2pnn_A          153 SLAACTNQLAI-----------VKFLLQNSWQPADISARDSVGNTVLHALVE----VADNTVDNTKFVTSMYNEILILGA  217 (273)
T ss_dssp             HHHHHTTCHHH-----------HHHHHHCSSCCCCTTCCCTTSCCHHHHHHH----HCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHH-----------HHHHHhcccCCCCceeeCCCCCcHHHHHHH----ccCcchhHHHHHHHHHHHHHHhhh
Confidence            99999999999           9999993  399999999999999999998    333         689999999999


Q ss_pred             CCC
Q 038344          182 NSA  184 (383)
Q Consensus       182 ~~~  184 (383)
                      +.+
T Consensus       218 ~~n  220 (273)
T 2pnn_A          218 KLH  220 (273)
T ss_dssp             HHC
T ss_pred             hcc
Confidence            874

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=1.2e-23  Score=171.08  Aligned_cols=121  Identities=31%  Similarity=0.404  Sum_probs=110.9

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKP   81 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~   81 (383)
                      ||||+|+   ..|+.+++++|++.++++ +                    .+|.+|+||||+|+..|+.+++++|+++|+
T Consensus        16 t~l~~A~---~~g~~~~v~~Ll~~g~~~-~--------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   71 (136)
T 2jab_A           16 KKLLEAA---RAGQDDEVRILMANGADV-N--------------------AKDEYGLTPLYLATAHGHLEIVEVLLKNGA   71 (136)
T ss_dssp             HHHHHHH---HHTCHHHHHHHHHTTCCT-T--------------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHH---HhCCHHHHHHHHHcCCCC-C--------------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            7999995   499999999999998876 3                    356778899999999999999999999988


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHH
Q 038344           82 DAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILA  161 (383)
Q Consensus        82 ~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~  161 (383)
                      +                  +|.+|.+|+||||+|+..|+.++           +++|++. |++++..|.+|+||||+|+
T Consensus        72 ~------------------~~~~d~~g~t~L~~A~~~~~~~~-----------v~~Ll~~-g~~~~~~~~~g~tpl~~A~  121 (136)
T 2jab_A           72 D------------------VNAVDAIGFTPLHLAAFIGHLEI-----------AEVLLKH-GADVNAQDKFGKTAFDISI  121 (136)
T ss_dssp             C------------------TTCCCTTCCCHHHHHHHHTCHHH-----------HHHHHHT-TCCTTCCCTTSCCHHHHHH
T ss_pred             C------------------CCcCCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-CCCCcCcCCCCCCHHHHHH
Confidence            7                  89999999999999999999999           9999996 9999999999999999999


Q ss_pred             hccCCcchhhHHHHHHHhc
Q 038344          162 QSKRDIKYWEIGELLRRAR  180 (383)
Q Consensus       162 ~~~~~~~~~~i~~~L~~~g  180 (383)
                      .    .++.+++++|+++|
T Consensus       122 ~----~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          122 G----NGNEDLAEILQKLN  136 (136)
T ss_dssp             H----TTCHHHHHHHHHC-
T ss_pred             H----CCCHHHHHHHHHcC
Confidence            9    88899999999886

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.91  E-value=3.6e-23  Score=183.60  Aligned_cols=164  Identities=26%  Similarity=0.283  Sum_probs=140.9

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||+|+   ..|+.+++++|++.+++.....+..|.||||+|+..|+             ++.+|..|.||||+|+..
T Consensus        43 ~t~L~~A~---~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  119 (240)
T 3eu9_A           43 VTLLHWAA---INNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF  119 (240)
T ss_dssp             CCHHHHHH---HTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCHHHHHH---HhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            48999995   49999999999999999866777779999999999998             566788999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCch------HHHHHhhc----------cCCcccccCCCC-CCCcHHHHHHHcCChhHHHHhhhc
Q 038344           68 GHIDVLEELVRAKPDAASA------PLKSFLET----------REGSELLNANDD-NGMTILHLAVADKQIEIWITHITY  130 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~------~l~~l~~~----------~~~~~~~n~~d~-~g~TpLh~A~~~~~~~~~~~~l~~  130 (383)
                      |+.+++++|+++|++....      +++.....          ...+..++..+. .|+||||+|+..|+.++       
T Consensus       120 ~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~-------  192 (240)
T 3eu9_A          120 GHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTV-------  192 (240)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHH-------
T ss_pred             CHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHH-------
Confidence            9999999999998876432      33333311          125677888887 99999999999999999       


Q ss_pred             hhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCC
Q 038344          131 KSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNS  183 (383)
Q Consensus       131 ~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~  183 (383)
                          +++|++. |++++..|..|.||+|+|+.    .++.+++++|+++|++.
T Consensus       193 ----v~~Ll~~-g~~~~~~~~~g~t~l~~A~~----~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          193 ----ISLLLEA-GANVDAQNIKGESALDLAKQ----RKNVWMINHLQEARQAK  236 (240)
T ss_dssp             ----HHHHHHH-TCCTTCBCTTSCBHHHHHHH----TTCHHHHHHHHHHC---
T ss_pred             ----HHHHHHc-CCCCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHhhhcc
Confidence                9999996 99999999999999999999    88999999999999876

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=2.4e-23  Score=166.01  Aligned_cols=124  Identities=37%  Similarity=0.517  Sum_probs=114.3

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAK   80 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~   80 (383)
                      +||||+|+.   .|+.+++++|++.++++ +                    ..|.+|.||||+|+..|+.+++++|+++|
T Consensus         3 ~t~L~~A~~---~~~~~~v~~Ll~~~~~~-~--------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g   58 (126)
T 1n0r_A            3 RTPLHLAAR---NGHLEVVKLLLEAGADV-N--------------------AKDKNGRTPLHLAARNGHLEVVKLLLEAG   58 (126)
T ss_dssp             CCHHHHHHH---HTCHHHHHHHHHHTCCT-T--------------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             ccHHHHHHH---cCcHHHHHHHHHcCCCC-C--------------------CcCCCCCcHHHHHHHcCcHHHHHHHHHcC
Confidence            599999954   99999999999998876 2                    34667889999999999999999999998


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHH
Q 038344           81 PDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDIL  160 (383)
Q Consensus        81 ~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A  160 (383)
                      ++                  ++.+|..|+||||+|+..|+.++           +++|++. |++++.+|.+|.||||+|
T Consensus        59 ~~------------------~~~~~~~g~t~l~~A~~~~~~~~-----------~~~Ll~~-g~~~~~~~~~g~t~l~~A  108 (126)
T 1n0r_A           59 AD------------------VNAKDKNGRTPLHLAARNGHLEV-----------VKLLLEA-GADVNAKDKNGRTPLHLA  108 (126)
T ss_dssp             CC------------------TTCCCTTSCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTTCCCTTSCCHHHHH
T ss_pred             CC------------------CcccCCCCCcHHHHHHHcChHHH-----------HHHHHHc-CCCCcccCCCCCCHHHHH
Confidence            87                  88999999999999999999999           9999996 999999999999999999


Q ss_pred             HhccCCcchhhHHHHHHHhcCC
Q 038344          161 AQSKRDIKYWEIGELLRRARGN  182 (383)
Q Consensus       161 ~~~~~~~~~~~i~~~L~~~ga~  182 (383)
                      +.    .++.+++++|+++||+
T Consensus       109 ~~----~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A          109 AR----NGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HH----TTCHHHHHHHHHHTCC
T ss_pred             HH----cCcHHHHHHHHHcCCC
Confidence            99    8899999999999986

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.90  E-value=2e-24  Score=194.96  Aligned_cols=151  Identities=23%  Similarity=0.229  Sum_probs=123.2

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHh----cCCcccccC----CCCCCcHHHHHH---HcCC--------------------
Q 038344            1 MTILQLAVAAALLGHEDFVNEILC----QKPELARKS----DSRKSSALHIAS---QKGK--------------------   49 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~----~~~~~~~~~----d~~g~TpLh~Aa---~~g~--------------------   49 (383)
                      +||||.|+   ..|+.+.++.|++    .+.++ +..    |.+|+||||+|+   ..|+                    
T Consensus         6 ~~~L~~A~---~~g~~~~v~~ll~~l~~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            6 RPILFDIV---SRGSPDGLEGLLSFLLTHKKRL-TDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             HHHHHHHH---HHTCGGGGTTHHHHHHHHTCCT-TSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHH---HhCCHHHHHHHHHHHHhcCCCc-chhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            47899995   4999996555555    88877 433    378999999999   5576                    


Q ss_pred             ----ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCC--------------CCCCcH
Q 038344           50 ----CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNAND--------------DNGMTI  111 (383)
Q Consensus        50 ----~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d--------------~~g~Tp  111 (383)
                          .+..|.+|+||||+|+..|+.+++++|+++|++                  +|.+|              .+|+||
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------------------~~~~~~~~~~~~~~~~~~~~~g~tp  143 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD------------------VHAQARGRFFQPKDEGGYFYFGELP  143 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC------------------TTCCCEECCCSSSCCCCSCCSCSSH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC------------------cCccccccccCcccccccccCCCCH
Confidence                122344899999999999999999999999988                  66666              689999


Q ss_pred             HHHHHHcCChhHHHHhhhchhhHHHHhhhc--ccccccccccCCCCHHHHHHhccCCcc-----hhhHHHHHHHhcCCCC
Q 038344          112 LHLAVADKQIEIWITHITYKSRAIKFFTTS--TAIEVNAVNANGFTAWDILAQSKRDIK-----YWEIGELLRRARGNSA  184 (383)
Q Consensus       112 Lh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~--~g~d~~~~n~~G~TpL~~A~~~~~~~~-----~~~i~~~L~~~ga~~~  184 (383)
                      ||+|+..|+.++           +++|++.  .|++++.+|.+|+||||+|+....+..     ..+++++|+++|++..
T Consensus       144 L~~A~~~g~~~~-----------v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~  212 (260)
T 3jxi_A          144 LSLAACTNQPHI-----------VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF  212 (260)
T ss_dssp             HHHHHHTTCHHH-----------HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHH-----------HHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccc
Confidence            999999999999           9999993  399999999999999999997322110     1589999999999873

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.90  E-value=1.5e-23  Score=196.58  Aligned_cols=141  Identities=19%  Similarity=0.205  Sum_probs=125.9

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhc-CCcccccCCCCCCcHHHHHHHcCC-----------------ccccCCCCCcHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQ-KPELARKSDSRKSSALHIASQKGK-----------------CSATDVDGRNALH   62 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~TpLh~Aa~~g~-----------------~~~~d~~G~tpLh   62 (383)
                      +||||+|+   ..|+.+++++|+++ |.++ +..|..|.||||.++..++                 ++.+|.+|+||||
T Consensus       169 ~T~L~~A~---~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~  244 (337)
T 4g8k_A          169 ATALMDAA---EKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI  244 (337)
T ss_dssp             CCHHHHHH---HHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHH
T ss_pred             CcHHHHHH---HCCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            48999995   49999999999975 6776 8899999999999876654                 5778899999999


Q ss_pred             HHHHcCCHHHHHHHHHc-CCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhc
Q 038344           63 LAAMEGHIDVLEELVRA-KPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTS  141 (383)
Q Consensus        63 ~A~~~g~~~iv~~Ll~~-~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~  141 (383)
                      +|++.|+.++++.|++. +.+                  +|.+|.+|+||||+|+..|+.++           +++|++.
T Consensus       245 ~a~~~~~~~~v~~Ll~~~~~~------------------vn~~d~~G~TpL~~A~~~g~~~i-----------v~~Ll~~  295 (337)
T 4g8k_A          245 LAVEKKHLGLVQRLLEQEHIE------------------INDTDSDGKTALLLAVELKLKKI-----------AELLCKR  295 (337)
T ss_dssp             HHHHTTCHHHHHHHHTSTTCC------------------TTCBCTTSCBHHHHHHHTTCHHH-----------HHHHHTT
T ss_pred             HHHHhhhhHHHHHHHHhcCCc------------------ccCcCCCCCCHHHHHHHcCCHHH-----------HHHHHHC
Confidence            99999999999999985 444                  89999999999999999999999           9999996


Q ss_pred             ccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          142 TAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       142 ~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                       |+|+|..     +|||+|+.    .++.+++++|+++||++.
T Consensus       296 -GAd~n~~-----~~L~~A~~----~~~~~iv~~Ll~~GA~~d  328 (337)
T 4g8k_A          296 -GASTDCG-----DLVMTARR----NYDHSLVKVLLSHGAKED  328 (337)
T ss_dssp             -SCSSTTC-----CHHHHHHH----TTCHHHHHHHHHTTCCC-
T ss_pred             -CCCCCCC-----CHHHHHHH----cCCHHHHHHHHHCcCCCC
Confidence             9998754     59999999    888999999999999984

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.90  E-value=1.6e-23  Score=176.92  Aligned_cols=114  Identities=31%  Similarity=0.452  Sum_probs=102.7

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||+|+   ..|+.++++.|++.++++ +.+|.+|+||||+|+..|+             ++.+|.+|+||||+|++.
T Consensus        38 ~t~l~~a~---~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~  113 (169)
T 4gpm_A           38 RTPLHHAA---ENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN  113 (169)
T ss_dssp             CCHHHHHH---HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCHHHHHH---HcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc
Confidence            59999995   499999999999999998 8899999999999999998             678999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccc
Q 038344           68 GHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVN  147 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~  147 (383)
                      |+.+++++|+++|++                  ++.+|.+|+||||+|+..|+.++           +++|++. |++++
T Consensus       114 g~~~~v~~Ll~~gad------------------~~~~d~~G~TpL~~A~~~g~~~i-----------v~~Ll~~-GA~ie  163 (169)
T 4gpm_A          114 GHKEVVKLLISKGAD------------------VNTSDSDGRTPLDLAREHGNEEV-----------VKLLEKQ-GGWLE  163 (169)
T ss_dssp             TCHHHHHHHHHTTCC------------------TTCCCTTSCCHHHHHHHTTCHHH-----------HHHHHTC------
T ss_pred             CCHHHHHHHHHcCCC------------------ccccCCCCCCHHHHHHHcCCHHH-----------HHHHHHC-CCCcC
Confidence            999999999999988                  89999999999999999999999           9999996 99986


Q ss_pred             c
Q 038344          148 A  148 (383)
Q Consensus       148 ~  148 (383)
                      .
T Consensus       164 ~  164 (169)
T 4gpm_A          164 H  164 (169)
T ss_dssp             -
T ss_pred             C
Confidence            5

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.90  E-value=1.3e-23  Score=193.34  Aligned_cols=128  Identities=30%  Similarity=0.393  Sum_probs=105.7

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCC-----------
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVD-----------   56 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~-----------   56 (383)
                      +||||+|+.   .|+.+++++|++.|+++ +..|..|+||||+|+..|+             ++..|.+           
T Consensus        74 ~t~L~~A~~---~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  149 (299)
T 1s70_B           74 LTALHQACI---DDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE  149 (299)
T ss_dssp             CBHHHHHHH---TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH
T ss_pred             CCHHHHHHH---cCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhc
Confidence            589999954   89999999999999988 7889999999999999988             3334444           


Q ss_pred             -------------------------------------------------CCcHHHHHHHcCCHHHHHHHHHcCCCCCchH
Q 038344           57 -------------------------------------------------GRNALHLAAMEGHIDVLEELVRAKPDAASAP   87 (383)
Q Consensus        57 -------------------------------------------------G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~   87 (383)
                                                                       |.||||+|+..|+.+++++|+++|++     
T Consensus       150 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-----  224 (299)
T 1s70_B          150 AMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-----  224 (299)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-----
T ss_pred             chHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-----
Confidence                                                             55555555555555555555555544     


Q ss_pred             HHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHh
Q 038344           88 LKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQ  162 (383)
Q Consensus        88 l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~  162 (383)
                                   +|.+|.+|+||||+|+..|+.++           +++|++. |+|++.+|..|+||||+|.+
T Consensus       225 -------------~~~~d~~g~tpL~~A~~~~~~~~-----------v~~Ll~~-gad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          225 -------------VNIKDYDGWTPLHAAAHWGKEEA-----------CRILVEN-LCDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             -------------TTCCCTTCCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTTCCCTTSCCTTTSCCS
T ss_pred             -------------CCCcCCCCCcHHHHHHhcCCHHH-----------HHHHHHc-CCCCCCcCCCCCCHHHHHHH
Confidence                         89999999999999999999999           9999996 99999999999999999976

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=3.9e-24  Score=183.64  Aligned_cols=143  Identities=13%  Similarity=0.094  Sum_probs=123.9

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-----------------ccccCCCCCcHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-----------------CSATDVDGRNALHL   63 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-----------------~~~~d~~G~tpLh~   63 (383)
                      +++|+.|   +..|+.+.++.+++.+.+.  ..|..|+||||+|+..|+                 ++.+|.+|+||||+
T Consensus         7 ~~~l~~A---a~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~   81 (186)
T 3t8k_A            7 YRTVSAA---AMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFP   81 (186)
T ss_dssp             CSSHHHH---HHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHH
T ss_pred             ccHHHHH---HHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            4678888   5599999999999988654  223779999999999885                 78889999999999


Q ss_pred             HHHcCC------HHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCC-cHHHHHHHcCC-----hhHHHHhhhch
Q 038344           64 AAMEGH------IDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGM-TILHLAVADKQ-----IEIWITHITYK  131 (383)
Q Consensus        64 A~~~g~------~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~-TpLh~A~~~~~-----~~~~~~~l~~~  131 (383)
                      |+..|+      .+++++|+++|++                  +|.+|.+|+ ||||+|+..+.     .++        
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~~Gad------------------in~~d~~g~ttpLh~A~~~~~~~~~~~~i--------  135 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLEKGAD------------------ITALYKPYKIVVFKNIFNYFVDENEMIPL--------  135 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCC------------------SSSCBGGGTBCTTGGGGGCCSCHHHHHHH--------
T ss_pred             HHHcCCcchhhHHHHHHHHHHCCCC------------------CCccCCCcCchHHHHHHHcCCChhhHHHH--------
Confidence            999987      6889999999988                  999999999 99999999554     345        


Q ss_pred             hhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcC
Q 038344          132 SRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARG  181 (383)
Q Consensus       132 ~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga  181 (383)
                         +++|++..|+|++.+|..|.||||+|+.    .++.+++++|.+...
T Consensus       136 ---v~~Ll~~~gad~~~~d~~G~TpL~~A~~----~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          136 ---YKLIFSQSGLQLLIKDKWGLTALEFVKR----CQKPIALKMMEDYIK  178 (186)
T ss_dssp             ---HHHHHTSTTCCTTCCCTTSCCHHHHHHT----TTCHHHHHHHHHHHH
T ss_pred             ---HHHHHHhcCCCCcccCCCCCCHHHHHHH----cCCHHHHHHHHHHHH
Confidence               8999983499999999999999999999    888899999987653

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=1.1e-23  Score=175.29  Aligned_cols=125  Identities=22%  Similarity=0.202  Sum_probs=100.5

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCc-HHHHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRN-ALHLAAM   66 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~t-pLh~A~~   66 (383)
                      .||||+|+.   .|+.+++++|+++++++ +..|..|+||||+|+ .|+             ++.+|.+|+| |||+|+.
T Consensus        13 ~t~L~~A~~---~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~   87 (156)
T 1bi7_B           13 ADWLATAAA---RGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   87 (156)
T ss_dssp             TTHHHHHHH---HTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             hHHHHHHHH---cCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHH
Confidence            489999954   99999999999999988 888999999999985 666             6788999999 9999999


Q ss_pred             cCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccc
Q 038344           67 EGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEV  146 (383)
Q Consensus        67 ~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~  146 (383)
                      .|+.+++++|+++|++                  +|.+|.+|+||||+|+..|+.++           +++|++. |+++
T Consensus        88 ~~~~~~v~~Ll~~ga~------------------~~~~d~~g~tpl~~A~~~~~~~~-----------v~~Ll~~-ga~~  137 (156)
T 1bi7_B           88 EGFLDTLVVLHRAGAR------------------LDVRDAWGRLPVDLAEELGHRDV-----------ARYLRAA-AGGT  137 (156)
T ss_dssp             HTCHHHHHHHHHHTCC------------------SSCCCTTCCCHHHHHHHHTCHHH-----------HHHHSSC-C---
T ss_pred             CCCHHHHHHHHHcCCC------------------CcccCCCCCCHHHHHHHhCHHHH-----------HHHHHHc-CCCC
Confidence            9999999999999888                  89999999999999999999999           9999996 9999


Q ss_pred             cccccCCCCHHHHH
Q 038344          147 NAVNANGFTAWDIL  160 (383)
Q Consensus       147 ~~~n~~G~TpL~~A  160 (383)
                      +.+|..|.||.+-+
T Consensus       138 ~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          138 RGSNHARIDAAEGP  151 (156)
T ss_dssp             --------------
T ss_pred             CccCcCcCcccccC
Confidence            99999999998744

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.89  E-value=1.3e-22  Score=174.56  Aligned_cols=121  Identities=22%  Similarity=0.239  Sum_probs=114.1

Q ss_pred             cccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccC
Q 038344           30 ARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETRE   96 (383)
Q Consensus        30 ~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~   96 (383)
                      .+.+|..|+||||+|+..|+             ++.+|.+|+||||+|+..|+.+++++|+++|++              
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--------------   93 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN--------------   93 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC--------------
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCC--------------
Confidence            46789999999999999998             567888999999999999999999999999888              


Q ss_pred             CcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHH
Q 038344           97 GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELL  176 (383)
Q Consensus        97 ~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L  176 (383)
                          ++.+|..|+||||+|+..|+.++           +++|++. |++++..|.+|.||||+|+.    .++.+++++|
T Consensus        94 ----~~~~~~~g~t~L~~A~~~~~~~~-----------v~~Ll~~-g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~L  153 (192)
T 2rfm_A           94 ----VNTKDFSGKTPLMWSIIFGYSEM-----------SYFLLEH-GANVNDRNLEGETPLIVASK----YGRSEIVKKL  153 (192)
T ss_dssp             ----TTCCCTTSCCHHHHHHHHTCHHH-----------HHHHHHT-TCCSSCCCTTCCCHHHHHHH----HTCHHHHHHH
T ss_pred             ----CCCCCCCCCcHHHHHHHcCCHHH-----------HHHHHHC-CCCCCCCCCCCCCHHHHHHH----cCCHHHHHHH
Confidence                88999999999999999999999           9999996 99999999999999999999    8889999999


Q ss_pred             HHhcCCCC
Q 038344          177 RRARGNSA  184 (383)
Q Consensus       177 ~~~ga~~~  184 (383)
                      +++|+++.
T Consensus       154 l~~ga~~~  161 (192)
T 2rfm_A          154 LELGADIS  161 (192)
T ss_dssp             HHTTCCTT
T ss_pred             HHCCCCCC
Confidence            99999874

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.88  E-value=3.9e-23  Score=188.65  Aligned_cols=146  Identities=19%  Similarity=0.216  Sum_probs=131.2

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCc-ccccCCCCCCcHHHHHHHcCC--------------ccccCCCCCcHHHHHH-
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPE-LARKSDSRKSSALHIASQKGK--------------CSATDVDGRNALHLAA-   65 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~-~~~~~d~~g~TpLh~Aa~~g~--------------~~~~d~~G~tpLh~A~-   65 (383)
                      +++|.|   +..|+.+.++.+++.+.+ ..+..|.+|+||||+|+..|+              ++..|.+|+||||+|+ 
T Consensus        78 ~~l~~a---~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~  154 (276)
T 4hbd_A           78 SDAHPE---LVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL  154 (276)
T ss_dssp             TTCCHH---HHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGG
T ss_pred             cCCCHH---HHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHH
Confidence            566776   458899999999888765 248889999999999999998              5677889999999999 


Q ss_pred             ----HcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhc
Q 038344           66 ----MEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTS  141 (383)
Q Consensus        66 ----~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~  141 (383)
                          ..++.+++++|++.|.+                  .+..|..|+||||+|+..|+.++           +++|++.
T Consensus       155 ~~~~~~~~~~~v~~Ll~~g~~------------------~~~~~~~g~tpLh~A~~~g~~~~-----------v~~Ll~~  205 (276)
T 4hbd_A          155 ATLKTQDDIETVLQLFRLGNI------------------NAKASQAGQTALMLAVSHGRVDV-----------VKALLAC  205 (276)
T ss_dssp             CCCCSHHHHHHHHHHHHHSCT------------------TCCCTTTCCCHHHHHHHTTCHHH-----------HHHHHHT
T ss_pred             HHhhhhhhHHHHHHHHHcCCC------------------ccccCCCCCCHHHHHHHcCCHHH-----------HHHHHhC
Confidence                67899999999998876                  77889999999999999999999           9999996


Q ss_pred             ccccccccccCCCCHHHHHHhccCCcchhhHHHHHHH-hcCCCC
Q 038344          142 TAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRR-ARGNSA  184 (383)
Q Consensus       142 ~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~-~ga~~~  184 (383)
                       |+|+|.+|.+|+||||+|+.    .++.+++++|++ .|++++
T Consensus       206 -gad~n~~d~~G~TpLh~A~~----~g~~~iv~~Ll~~~gad~~  244 (276)
T 4hbd_A          206 -EADVNVQDDDGSTALMCACE----HGHKEIAGLLLAVPSCDIS  244 (276)
T ss_dssp             -TCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHTSTTCCTT
T ss_pred             -CCCCCCCCCCCCCHHHHHHH----CCCHHHHHHHHhcCCCCCc
Confidence             99999999999999999999    888999999999 898874

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.88  E-value=2.2e-22  Score=169.98  Aligned_cols=122  Identities=24%  Similarity=0.246  Sum_probs=108.4

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||+|+   ..|+.+++++|++.++++ +..|..|+||||+|+..|+             ++.+|.+|+||||+|+..
T Consensus        37 ~t~L~~A~---~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  112 (172)
T 3v30_A           37 FTPLIWAS---AFGEIETVRFLLEWGADP-HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRG  112 (172)
T ss_dssp             CCHHHHHH---HTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCHHHHHH---HcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            59999995   499999999999999998 8889999999999999998             677889999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccc
Q 038344           68 GHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVN  147 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~  147 (383)
                      |+.+++++|+++|++                  ++.+|.+|+||||+|+..|+.++           +++|++. ++++.
T Consensus       113 ~~~~~v~~Ll~~ga~------------------~~~~~~~g~t~l~~A~~~~~~~~-----------~~~L~~~-~~~~~  162 (172)
T 3v30_A          113 NHVKCVEALLARGAD------------------LTTEADSGYTPMDLAVALGYRKV-----------QQVIENH-ILKLF  162 (172)
T ss_dssp             TCHHHHHHHHHTTCC------------------TTCCCTTSCCHHHHHHHHTCHHH-----------HHHHHHH-HHHHS
T ss_pred             CCHHHHHHHHHcCCC------------------ccccCCCCCCHHHHHHHhCcHHH-----------HHHHHHH-HHHHh
Confidence            999999999999888                  89999999999999999999999           9999996 99999


Q ss_pred             ccccCCCCH
Q 038344          148 AVNANGFTA  156 (383)
Q Consensus       148 ~~n~~G~Tp  156 (383)
                      ..|..|.||
T Consensus       163 ~~~~~~~~p  171 (172)
T 3v30_A          163 QSNLVPADP  171 (172)
T ss_dssp             CC-------
T ss_pred             cccCCCCCC
Confidence            999999887

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.87  E-value=8.8e-23  Score=190.93  Aligned_cols=148  Identities=18%  Similarity=0.087  Sum_probs=122.1

Q ss_pred             HcCCHHHHHHHHhcCCccccc-CCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcCC---HHHHH
Q 038344           12 LLGHEDFVNEILCQKPELARK-SDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEGH---IDVLE   74 (383)
Q Consensus        12 ~~g~~~~v~~Ll~~~~~~~~~-~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g~---~~iv~   74 (383)
                      ..+..++++.|++.+.++ +. .|.+|+||||+|+..|+             ++.+|.+|+||||+|+.+|+   .++++
T Consensus       106 ~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~  184 (327)
T 1sw6_A          106 DSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFE  184 (327)
T ss_dssp             HHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHH
T ss_pred             HhhHHHHHHHHHhcCCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHH
Confidence            356678899999999998 66 89999999999999999             77899999999999999998   78888


Q ss_pred             HHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHH----cCChhHHHHhhhchhhH----------------
Q 038344           75 ELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVA----DKQIEIWITHITYKSRA----------------  134 (383)
Q Consensus        75 ~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~----~~~~~~~~~~l~~~~~~----------------  134 (383)
                      .|++.+..                 .++.+|.+|+||||+|+.    .|+.+++..++......                
T Consensus       185 ~ll~~~~~-----------------~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~  247 (327)
T 1sw6_A          185 ALLDYLYP-----------------CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK  247 (327)
T ss_dssp             HHHHHHGG-----------------GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----
T ss_pred             HHHHhhhc-----------------cccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcc
Confidence            88886522                 388999999999999999    89999944443321100                


Q ss_pred             --------------------HHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          135 --------------------IKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       135 --------------------v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                                          +++|++.   ++|.+|.+|+||||+|+.    .++.+++++|+++|+++.
T Consensus       248 g~~~~~~~~~g~t~L~~a~~~~~Ll~~---~~n~~d~~G~TpLh~A~~----~g~~~~v~~Ll~~Gad~~  310 (327)
T 1sw6_A          248 ESKPNDKNGERKDSILENLDLKWIIAN---MLNAQDSNGDTCLNIAAR----LGNISIVDALLDYGADPF  310 (327)
T ss_dssp             ------------CHHHHHCSHHHHHHH---TTTCCCTTSCCHHHHHHH----HCCHHHHHHHHHTTCCTT
T ss_pred             cCCcccccccCCChhHHHHHHHHHHHh---CCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCc
Confidence                                2333332   688999999999999999    889999999999999984

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.87  E-value=7.5e-23  Score=166.36  Aligned_cols=124  Identities=24%  Similarity=0.283  Sum_probs=103.4

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAK   80 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~   80 (383)
                      +||||+|+.   .|+.+++++|++.++++                     +.+|.+|+||||+|+..|+.+++++|+++|
T Consensus        11 ~t~L~~A~~---~~~~~~~~~Ll~~g~~~---------------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g   66 (137)
T 3c5r_A           11 ETLLHIASI---KGDIPSVEYLLQNGSDP---------------------NVKDHAGWTPLHEACNHGHLKVVELLLQHK   66 (137)
T ss_dssp             CCHHHHHHH---HTCHHHHHHHHHTTCCS---------------------CCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCHHHHHHH---cCCHHHHHHHHHcCCCC---------------------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            478888844   78888888888887765                     345677889999999999999999999988


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHH
Q 038344           81 PDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDIL  160 (383)
Q Consensus        81 ~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A  160 (383)
                      ++                  ++.+|.+|+||||+|+..|+.++           +++|++. |++++.+|.+|.||+|+|
T Consensus        67 ~~------------------~~~~~~~g~t~L~~A~~~~~~~~-----------v~~Ll~~-ga~~~~~~~~g~tpl~~A  116 (137)
T 3c5r_A           67 AL------------------VNTTGYQNDSPLHDAAKNGHVDI-----------VKLLLSY-GASRNAVNIFGLRPVDYT  116 (137)
T ss_dssp             CC------------------TTCCCGGGCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTTCCCTTSCCGGGGC
T ss_pred             Cc------------------ccCcCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-CCCCCCCCCCCCCHHHHH
Confidence            87                  88999999999999999999999           9999986 999999999999999999


Q ss_pred             HhccCCcchhhHHHHHHHhcCC
Q 038344          161 AQSKRDIKYWEIGELLRRARGN  182 (383)
Q Consensus       161 ~~~~~~~~~~~i~~~L~~~ga~  182 (383)
                      +.    .+..+++++|.+.+..
T Consensus       117 ~~----~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A          117 DD----ESMKSLLLLPEKNESS  134 (137)
T ss_dssp             CC----HHHHHHHSCC------
T ss_pred             hh----ccHHHHHhhccccccC
Confidence            88    7777888777766543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.87  E-value=1.3e-21  Score=164.39  Aligned_cols=116  Identities=22%  Similarity=0.254  Sum_probs=109.5

Q ss_pred             CCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCccccc
Q 038344           36 RKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLN  102 (383)
Q Consensus        36 ~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n  102 (383)
                      +|.||||.|+..|+             ++.+|.+|.||||+|+..|+.+++++|+++|++                  ++
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------~~   63 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD------------------PQ   63 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------------TT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC------------------CC
Confidence            58999999999999             677899999999999999999999999999887                  88


Q ss_pred             CCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCC
Q 038344          103 ANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGN  182 (383)
Q Consensus       103 ~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~  182 (383)
                      .+|..|+||||+|+..|+.++           +++|++. |++++..|..|.||||+|+.    .++.+++++|+++|++
T Consensus        64 ~~~~~g~t~L~~A~~~~~~~~-----------v~~Ll~~-g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~  127 (167)
T 3v31_A           64 LLGKGRESALSLACSKGYTDI-----------VKMLLDC-GVDVNEYDWNGGTPLLYAVH----GNHVKCVKMLLESGAD  127 (167)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHH-----------HHHHHHH-TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCC
T ss_pred             CcCCCCCcHHHHHHHcCCHHH-----------HHHHHHC-CCCCCcCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCC
Confidence            999999999999999999999           9999996 99999999999999999999    8899999999999998


Q ss_pred             CCC
Q 038344          183 SAK  185 (383)
Q Consensus       183 ~~~  185 (383)
                      +..
T Consensus       128 ~~~  130 (167)
T 3v31_A          128 PTI  130 (167)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            743

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.87  E-value=1.2e-22  Score=168.98  Aligned_cols=120  Identities=19%  Similarity=0.258  Sum_probs=105.6

Q ss_pred             ccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCC
Q 038344           31 RKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREG   97 (383)
Q Consensus        31 ~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~   97 (383)
                      +..+..|.||||+|+..|+             ++.+|.+|+||||+|+ .|+.+++++|+++|++               
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~---------------   69 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE---------------   69 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC---------------
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC---------------
Confidence            4568889999999999999             6678899999999985 9999999999999887               


Q ss_pred             cccccCCCCCCCc-HHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHH
Q 038344           98 SELLNANDDNGMT-ILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELL  176 (383)
Q Consensus        98 ~~~~n~~d~~g~T-pLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L  176 (383)
                         +|.+|..|+| |||+|+..|+.++           +++|++. |++++.+|.+|+||||+|+.    .++.+++++|
T Consensus        70 ---~~~~d~~g~ttpL~~A~~~~~~~~-----------v~~Ll~~-ga~~~~~d~~g~tpl~~A~~----~~~~~~v~~L  130 (156)
T 1bi7_B           70 ---PNCADPATLTRPVHDAAREGFLDT-----------LVVLHRA-GARLDVRDAWGRLPVDLAEE----LGHRDVARYL  130 (156)
T ss_dssp             ---CCCCCTTTCCCHHHHHHHHTCHHH-----------HHHHHHH-TCCSSCCCTTCCCHHHHHHH----HTCHHHHHHH
T ss_pred             ---CCCcCCCCCcHHHHHHHHCCCHHH-----------HHHHHHc-CCCCcccCCCCCCHHHHHHH----hCHHHHHHHH
Confidence               8999999999 9999999999999           9999996 99999999999999999999    8889999999


Q ss_pred             HHhcCCCCC
Q 038344          177 RRARGNSAK  185 (383)
Q Consensus       177 ~~~ga~~~~  185 (383)
                      +++|+++..
T Consensus       131 l~~ga~~~~  139 (156)
T 1bi7_B          131 RAAAGGTRG  139 (156)
T ss_dssp             SSCC-----
T ss_pred             HHcCCCCCc
Confidence            999999843

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.87  E-value=1.3e-21  Score=164.12  Aligned_cols=118  Identities=25%  Similarity=0.334  Sum_probs=108.9

Q ss_pred             CCCCCCcHHHHHHHcCC--------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCc
Q 038344           33 SDSRKSSALHIASQKGK--------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGS   98 (383)
Q Consensus        33 ~d~~g~TpLh~Aa~~g~--------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~   98 (383)
                      .|.+|.||||.|+..|+              .+..|..|.||||+|+..|+.+++++|+++|++                
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------   67 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD----------------   67 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------------
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC----------------
Confidence            47788999999999999              345677889999999999999999999999887                


Q ss_pred             ccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHH
Q 038344           99 ELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRR  178 (383)
Q Consensus        99 ~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~  178 (383)
                        ++.+|.+|+||||+|+..|+.++           +++|++. |++++..|..|+||||+|+.    .++.+++++|++
T Consensus        68 --~~~~~~~g~t~L~~A~~~~~~~~-----------v~~Ll~~-g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~  129 (165)
T 3twr_A           68 --VHAKDKGGLVPLHNACSYGHYEV-----------AELLVKH-GAVVNVADLWKFTPLHEAAA----KGKYEICKLLLQ  129 (165)
T ss_dssp             --TTCCCTTSCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHH
T ss_pred             --CCccCCCCCCHHHHHHHcCcHHH-----------HHHHHhC-CCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHH
Confidence              89999999999999999999999           9999996 99999999999999999999    889999999999


Q ss_pred             hcCCCC
Q 038344          179 ARGNSA  184 (383)
Q Consensus       179 ~ga~~~  184 (383)
                      +|+++.
T Consensus       130 ~ga~~~  135 (165)
T 3twr_A          130 HGADPT  135 (165)
T ss_dssp             TTCCTT
T ss_pred             cCCCCc
Confidence            999874

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=5.6e-22  Score=158.11  Aligned_cols=107  Identities=25%  Similarity=0.359  Sum_probs=97.6

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKP   81 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~   81 (383)
                      ||||.|+   ..|+.+++++|++.++++ +                    .+|.+|+||||+|+..|+.+++++|+++|+
T Consensus         9 ~~l~~A~---~~~~~~~v~~ll~~~~~~-~--------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   64 (123)
T 3aaa_C            9 KEFMWAL---KNGDLDEVKDYVAKGEDV-N--------------------RTLEGGRKPLHYAADCGQLEILEFLLLKGA   64 (123)
T ss_dssp             HHHHHHH---HTTCHHHHHHHHHTTCCT-T--------------------SCCTTSSCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             hHHHHHH---HcCCHHHHHHHHHcCCCc-C--------------------ccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            7999995   499999999999998876 3                    356678899999999999999999999888


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHH
Q 038344           82 DAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILA  161 (383)
Q Consensus        82 ~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~  161 (383)
                      +                  +|.+|.+|+||||+|+..|+.++           +++|++. |++++.+|.+|.||+|+|.
T Consensus        65 ~------------------~~~~d~~g~tpL~~A~~~~~~~~-----------v~~Ll~~-ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           65 D------------------INAPDKHHITPLLSAVYEGHVSC-----------VKLLLSK-GADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             C------------------TTCCCTTSCCHHHHHHHHTCHHH-----------HHHHHHT-TCCTTCCCTTSCCHHHHCC
T ss_pred             C------------------CCcCCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-CCCCCCcCCCCCCHHHHhC
Confidence            7                  89999999999999999999999           9999996 9999999999999999996


Q ss_pred             h
Q 038344          162 Q  162 (383)
Q Consensus       162 ~  162 (383)
                      .
T Consensus       115 ~  115 (123)
T 3aaa_C          115 N  115 (123)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.86  E-value=4.6e-22  Score=176.51  Aligned_cols=102  Identities=22%  Similarity=0.259  Sum_probs=89.5

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhh
Q 038344           50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHIT  129 (383)
Q Consensus        50 ~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~  129 (383)
                      ++.+|.+|+||||+|+..|+.+++++|+++|++                  +|.+|.+|+||||+|+..|+.++      
T Consensus        47 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~------------------~n~~d~~g~tpLh~A~~~g~~~~------  102 (229)
T 2vge_A           47 PSQPNEEGITALHNAICGANYSIVDFLITAGAN------------------VNSPDSHGWTPLHCAASCNDTVI------  102 (229)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------------TTCCCTTCCCHHHHHHHTTCHHH------
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------------------CCCCCCCCCCHHHHHHHcCCHHH------
Confidence            355677889999999999999999999998887                  88899999999999999999999      


Q ss_pred             chhhHHHHhhhcccccccccc-cCCCCHHHHH--HhccCCcchhhHHHHHHHhcCCCCC
Q 038344          130 YKSRAIKFFTTSTAIEVNAVN-ANGFTAWDIL--AQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       130 ~~~~~v~~Ll~~~g~d~~~~n-~~G~TpL~~A--~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                           +++|++. |++++..+ .+|.||||+|  +.    .++.+++++|+++|++++.
T Consensus       103 -----v~~Ll~~-ga~~~~~~~~~g~tpL~~A~a~~----~~~~~~v~~Ll~~ga~~~~  151 (229)
T 2vge_A          103 -----CMALVQH-GAAIFATTLSDGATAFEKCDPYR----EGYADCATYLADVEQSMGL  151 (229)
T ss_dssp             -----HHHHHTT-TCCTTCCCSSTTCCTGGGCCTTS----TTHHHHHHHHHHHHHHTTT
T ss_pred             -----HHHHHHc-CCCcccccCCCCCCHHHHHHHHh----cChHHHHHHHHHcCCCccc
Confidence                 9999986 99999886 5999999998  77    7889999999999988754

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=2.3e-21  Score=146.68  Aligned_cols=93  Identities=39%  Similarity=0.569  Sum_probs=87.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHH
Q 038344           56 DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAI  135 (383)
Q Consensus        56 ~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v  135 (383)
                      +|+||||+|+..|+.+++++|+++|++                  +|.+|.+|+||||+|+..|+.++           +
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------~n~~d~~g~t~L~~A~~~~~~~~-----------v   51 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD------------------VNAKDKNGRTPLHLAARNGHLEV-----------V   51 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC------------------TTCCCTTSCCHHHHHHHTTCHHH-----------H
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC------------------CcccCCCCCCHHHHHHHcCCHHH-----------H
Confidence            589999999999999999999999888                  89999999999999999999999           9


Q ss_pred             HHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCC
Q 038344          136 KFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGN  182 (383)
Q Consensus       136 ~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~  182 (383)
                      ++|++. |++++.+|.+|+||||+|+.    .++.+++++|+++|++
T Consensus        52 ~~Ll~~-ga~~~~~d~~g~t~l~~A~~----~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           52 KLLLEA-GADVNAKDKNGRTPLHLAAR----NGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHT-TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCC
T ss_pred             HHHHHc-CCCCCccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCC
Confidence            999996 99999999999999999999    8899999999999985

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=9.5e-22  Score=173.28  Aligned_cols=126  Identities=21%  Similarity=0.229  Sum_probs=105.7

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc-
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRA-   79 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~-   79 (383)
                      +||||+|+   ..|+.++++.|++.++++                     +.+|.+|+||||+|+..|+.+++++|+++ 
T Consensus        74 ~t~L~~A~---~~g~~~~v~~Ll~~g~~~---------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  129 (222)
T 3ehr_A           74 DNPLHEAA---KRGNLSWLRECLDNRVGV---------------------NGLDKAGSTALYWACHGGHKDIVEMLFTQP  129 (222)
T ss_dssp             SCHHHHHH---HHTCHHHHHHHHHTTCCT---------------------TCCCTTSCCHHHHHHHTTCHHHHHHHTTST
T ss_pred             cccccccc---ccCcHHHHHHHHhCCCCc---------------------cccCCCCCCHHHHHHHcCCHHHHHHHHcCC
Confidence            48999995   489999999999988776                     34567788999999999999999999998 


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHH
Q 038344           80 KPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI  159 (383)
Q Consensus        80 ~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~  159 (383)
                      |.+                  +|.+|.+|+||||+|+..|+.++           +++|++. |++++.+|.+|+||||+
T Consensus       130 g~~------------------~~~~d~~g~tpL~~A~~~~~~~~-----------v~~Ll~~-ga~~~~~~~~g~t~l~~  179 (222)
T 3ehr_A          130 NIE------------------LNQQNKLGDTALHAAAWKGYADI-----------VQLLLAK-GARTDLRNIEKKLAFDM  179 (222)
T ss_dssp             TCC------------------CCCCCTTSCCHHHHHHHHTCHHH-----------HHHHHHH-TCCSCCCCTTSCCHHHH
T ss_pred             CCC------------------ccccCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-CCCCccccCCCCCHHHH
Confidence            766                  89999999999999999999999           9999997 99999999999999999


Q ss_pred             HHhccCCcchhhHHHHHHHhcCCCC
Q 038344          160 LAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       160 A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      |+.    .+..++++.|++.|+...
T Consensus       180 A~~----~~~~~~l~~l~~~~~~~~  200 (222)
T 3ehr_A          180 ATN----AACASLLKKKQGTDAVRT  200 (222)
T ss_dssp             CCS----HHHHHHHC----------
T ss_pred             hcc----hhHHHHHHHHhccchhhh
Confidence            998    889999999999998873

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.86  E-value=5.5e-22  Score=187.93  Aligned_cols=145  Identities=17%  Similarity=0.085  Sum_probs=126.2

Q ss_pred             CChHHHHHHHHHcC--CHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC------------------ccccCCCCCcH
Q 038344            1 MTILQLAVAAALLG--HEDFVNEILCQKPELARKSDSRKSSALHIASQKGK------------------CSATDVDGRNA   60 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~------------------~~~~d~~G~tp   60 (383)
                      +||||+|+   ..|  +.+++++|++.|+++ +..|..|+||||+|+..|+                  ++..|.+|+||
T Consensus       139 ~t~L~~A~---~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~  214 (364)
T 3ljn_A          139 QTALHWCV---GLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH  214 (364)
T ss_dssp             CCHHHHHH---HSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCT
T ss_pred             CCHHHHHH---HcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcH
Confidence            59999995   489  999999999999998 8889999999999999998                  34678899999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhh
Q 038344           61 LHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTT  140 (383)
Q Consensus        61 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~  140 (383)
                      ||+|+..|+.+++++|+++|++                  +|.+|.+|+||||+|+..|+.++           +++|++
T Consensus       215 L~~A~~~g~~~~v~~Ll~~gad------------------~~~~d~~g~tpL~~A~~~g~~~~-----------v~~Ll~  265 (364)
T 3ljn_A          215 LHWAILINWEDVAMRFVEMGID------------------VNMEDNEHTVPLYLSVRAAMVLL-----------TKELLQ  265 (364)
T ss_dssp             THHHHTTTCHHHHHHHHTTTCC------------------TTCCCTTSCCHHHHHHHTCCHHH-----------HHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC------------------CCCCCCCCCCHHHHHHHhChHHH-----------HHHHHH
Confidence            9999999999999999999888                  89999999999999999999999           999998


Q ss_pred             cccccccc------------cccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCC
Q 038344          141 STAIEVNA------------VNANGFTAWDILAQSKRDIKYWEIGELLRRARGNS  183 (383)
Q Consensus       141 ~~g~d~~~------------~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~  183 (383)
                      . |++++.            .+..|.||++.|+.    .+..+.+..|+..+++.
T Consensus       266 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~----~~~~~~v~~ll~~~~~~  315 (364)
T 3ljn_A          266 K-TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAA----DPSKQEVLQLLQEKLDE  315 (364)
T ss_dssp             H-SCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSC----CHHHHHHHHHHHHHHHH
T ss_pred             c-CCchhhhcCcccCcccccccccccccchhhhh----ccCHHHHHHHHHHHHHH
Confidence            6 766533            56788999998888    66666666666666543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.85  E-value=5.8e-21  Score=162.46  Aligned_cols=117  Identities=21%  Similarity=0.226  Sum_probs=107.0

Q ss_pred             CCCCcHHHHHHHcCC--------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCccc
Q 038344           35 SRKSSALHIASQKGK--------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSEL  100 (383)
Q Consensus        35 ~~g~TpLh~Aa~~g~--------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~  100 (383)
                      .++.+|||.|+..|+              ++.+|.+|+||||+|+..|+.+++++|+++|++                  
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------   64 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR------------------   64 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC------------------
Confidence            467899999999998              567888999999999999999999999999887                  


Q ss_pred             ccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhc
Q 038344          101 LNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRAR  180 (383)
Q Consensus       101 ~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~g  180 (383)
                      ++.+|.+|+||||+|+..|+.++           +++|++. |++++..|.+|.||||+|+.    .++.+++++|+++|
T Consensus        65 ~~~~~~~g~t~L~~A~~~~~~~~-----------v~~Ll~~-g~~~~~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~g  128 (179)
T 3f6q_A           65 INVMNRGDDTPLHLAASHGHRDI-----------VQKLLQY-KADINAVNEHGNVPLHYACF----WGQDQVAEDLVANG  128 (179)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTT
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-CCCCCccCCCCCCHHHHHHH----cCCHHHHHHHHHCC
Confidence            89999999999999999999999           9999996 99999999999999999999    88899999999999


Q ss_pred             CCCCC
Q 038344          181 GNSAK  185 (383)
Q Consensus       181 a~~~~  185 (383)
                      +++..
T Consensus       129 a~~~~  133 (179)
T 3f6q_A          129 ALVSI  133 (179)
T ss_dssp             CCSSB
T ss_pred             CCcch
Confidence            99754

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.85  E-value=7.6e-21  Score=157.44  Aligned_cols=114  Identities=28%  Similarity=0.296  Sum_probs=105.6

Q ss_pred             CCcHHHHHHHcCC------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCC
Q 038344           37 KSSALHIASQKGK------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNAN  104 (383)
Q Consensus        37 g~TpLh~Aa~~g~------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~  104 (383)
                      +.||||.|+..|+            ....|.+|.||||+|+..|+.+++++|+++|++                  ++.+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------~~~~   63 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS------------------RDAR   63 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC------------------TTCC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------------CCCC
Confidence            4689999999999            223578899999999999999999999998887                  8899


Q ss_pred             CCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          105 DDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       105 d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      |.+|+||||+|+..|+.++           +++|++. |++++.+|.+|+||||+|+.    .++.+++++|+++|+++.
T Consensus        64 ~~~g~t~L~~A~~~~~~~~-----------v~~Ll~~-g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~  127 (153)
T 1awc_B           64 TKVDRTPLHMAASEGHANI-----------VEVLLKH-GADVNAKDMLKMTALHWATE----HNHQEVVELLIKYGADVH  127 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHH-----------HHHHHTT-TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCCHHHHHHHcChHHH-----------HHHHHHc-CCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCcc
Confidence            9999999999999999999           9999996 99999999999999999999    888999999999999874

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.84  E-value=1e-20  Score=159.46  Aligned_cols=119  Identities=32%  Similarity=0.463  Sum_probs=108.8

Q ss_pred             cCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCc
Q 038344           32 KSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGS   98 (383)
Q Consensus        32 ~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~   98 (383)
                      .....+.||||.|+..|+             ++.+|.+|.||||+|+..|+.+++++|+++|++                
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------   72 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD----------------   72 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----------------
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------------
Confidence            345667899999999999             567889999999999999999999999999887                


Q ss_pred             ccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHH
Q 038344           99 ELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRR  178 (383)
Q Consensus        99 ~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~  178 (383)
                        ++.+|.+|+||||+|+..|+.++           +++|++. |++++..|.+|.||||+|+.    .++.+++++|++
T Consensus        73 --~~~~~~~g~t~L~~A~~~~~~~~-----------~~~Ll~~-g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~  134 (169)
T 2y1l_E           73 --VNAVDHAGMTPLRLAALFGHLEI-----------VEVLLKN-GADVNANDMEGHTPLHLAAM----FGHLEIVEVLLK  134 (169)
T ss_dssp             --TTCCCTTSCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHH
T ss_pred             --CCccCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-CCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHH
Confidence              88999999999999999999999           9999996 99999999999999999999    889999999999


Q ss_pred             hcCCCC
Q 038344          179 ARGNSA  184 (383)
Q Consensus       179 ~ga~~~  184 (383)
                      +|++..
T Consensus       135 ~g~~~~  140 (169)
T 2y1l_E          135 NGADVN  140 (169)
T ss_dssp             TTCCTT
T ss_pred             cCCCCC
Confidence            999874

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.84  E-value=1e-20  Score=161.63  Aligned_cols=106  Identities=25%  Similarity=0.348  Sum_probs=93.6

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKP   81 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~   81 (383)
                      ||||.|+   ..|+.++++.|++ +.++                     +.+|.+|+||||+|+..|+.+++++|+++|+
T Consensus        46 t~L~~A~---~~g~~~~v~~Ll~-~~~~---------------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga  100 (183)
T 3deo_A           46 TPWWTAA---RKADEQALSQLLE-DRDV---------------------DAVDENGRTALLFVAGLGSDKCVRLLAEAGA  100 (183)
T ss_dssp             HHHHHHH---HTTCHHHHHHHTT-TSCT---------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CHHHHHH---HcCCHHHHHHHHh-cCCC---------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            7899884   4899999999998 6554                     3457788899999999999999999999988


Q ss_pred             CCCchHHHHHhhccCCcccccCCC-CCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHH
Q 038344           82 DAASAPLKSFLETREGSELLNAND-DNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDIL  160 (383)
Q Consensus        82 ~~~~~~l~~l~~~~~~~~~~n~~d-~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A  160 (383)
                      +                  +|.+| .+|+||||+|+..|+.++           +++|++. |++++.+|.+|+||||+|
T Consensus       101 ~------------------~~~~~~~~g~tpL~~A~~~~~~~~-----------v~~Ll~~-ga~~~~~d~~g~tpl~~A  150 (183)
T 3deo_A          101 D------------------LDHRDMRGGLTALHMAAGYVRPEV-----------VEALVEL-GADIEVEDERGLTALELA  150 (183)
T ss_dssp             C------------------TTCCCSSSSCCHHHHHHHTTCHHH-----------HHHHHHH-TCCTTCCCTTSCCHHHHH
T ss_pred             C------------------CCcCCCCCCCCHHHHHHhcCcHHH-----------HHHHHHc-CCCCcCCCCCCCCHHHHH
Confidence            7                  78888 889999999999999999           9999996 999999999999999999


Q ss_pred             Hh
Q 038344          161 AQ  162 (383)
Q Consensus       161 ~~  162 (383)
                      +.
T Consensus       151 ~~  152 (183)
T 3deo_A          151 RE  152 (183)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.84  E-value=8.9e-21  Score=158.25  Aligned_cols=111  Identities=26%  Similarity=0.358  Sum_probs=101.2

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||+|   +. |+.+++++|++.++++ +..|..|+||||+|+..|+             ++.+|.+|+||||+|++.
T Consensus        39 ~t~L~~A---~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  113 (162)
T 1ihb_A           39 RTALQVM---KL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE  113 (162)
T ss_dssp             CCHHHHC---CS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             ccHHHHH---Hc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            5899998   44 9999999999999998 8889999999999999998             677899999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccc
Q 038344           68 GHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIE  145 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d  145 (383)
                      |+.+++++|+++|++                 .++.+|..|+||||+|+..|+.++           +++|++. |+|
T Consensus       114 ~~~~~v~~Ll~~g~~-----------------~~~~~~~~g~t~l~~A~~~~~~~~-----------~~~Ll~~-GAd  162 (162)
T 1ihb_A          114 GHLRVVEFLVKHTAS-----------------NVGHRNHKGDTACDLARLYGRNEV-----------VSLMQAN-GAG  162 (162)
T ss_dssp             TCHHHHHHHHHHSCC-----------------CTTCCCTTSCCHHHHHHHTTCHHH-----------HHHHHHT-C--
T ss_pred             CCHHHHHHHHHccCC-----------------CCCCcCCCCCcHHHHHHHcCCHHH-----------HHHHHHh-CCC
Confidence            999999999999887                 268899999999999999999999           9999996 875

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=2.8e-20  Score=169.83  Aligned_cols=130  Identities=22%  Similarity=0.223  Sum_probs=113.2

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHc---CCHHHHHHHHH
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAME---GHIDVLEELVR   78 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~---g~~~iv~~Ll~   78 (383)
                      ++|+.|   +..|+.+.++.+++.|+++.....               ++..|..|+||||+|+..   |+.+++++|++
T Consensus       132 ~~l~~a---~~~~d~~~~~~ll~~g~~~~~~~~---------------l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~  193 (278)
T 1dcq_A          132 HSLCEA---VKTRDIFGLLQAYADGVDLTEKIP---------------LANGHEPDETALHLAVRSVDRTSLHIVDFLVQ  193 (278)
T ss_dssp             HHHHHH---HHTTCHHHHHHHHHTTCCTTSBCC---------------CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH
T ss_pred             hhhhhH---hhhcccHHHHHHHHhhcchhhhcc---------------ccccccCCCCcchHHHHhcccchHHHHHHHHH
Confidence            356666   558999999999999887632210               233467899999999998   89999999999


Q ss_pred             cCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHH
Q 038344           79 AKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWD  158 (383)
Q Consensus        79 ~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~  158 (383)
                      +|++                  +|.+|.+|+||||+|+..|+.++           +++|++. |+|++.+|.+|.||||
T Consensus       194 ~ga~------------------in~~d~~g~TpLh~A~~~g~~~~-----------v~~Ll~~-gad~~~~d~~g~tpL~  243 (278)
T 1dcq_A          194 NSGN------------------LDKQTGKGSTALHYCCLTDNAEC-----------LKLLLRG-KASIEIANESGETPLD  243 (278)
T ss_dssp             HCSC------------------TTCCCTTCCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTTCCCTTSCCHHH
T ss_pred             CCCC------------------ccccCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-CCCCCCccCCCCCHHH
Confidence            9988                  89999999999999999999999           9999995 9999999999999999


Q ss_pred             HHHhccCCcchhhHHHHHHHhcCCC
Q 038344          159 ILAQSKRDIKYWEIGELLRRARGNS  183 (383)
Q Consensus       159 ~A~~~~~~~~~~~i~~~L~~~ga~~  183 (383)
                      +|+.    .++.+++++|+++|++.
T Consensus       244 ~A~~----~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          244 IAKR----LKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHH----TTCHHHHHHHHHHHTTC
T ss_pred             HHHH----cCCHHHHHHHHHcCCCC
Confidence            9999    88999999999999976

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.83  E-value=1.3e-20  Score=168.65  Aligned_cols=127  Identities=22%  Similarity=0.276  Sum_probs=100.1

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKP   81 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~   81 (383)
                      ||||+|+   ..|+.++++.|++ +.++                     +.+|.+|+||||+|+..|+.+++++|+++|+
T Consensus        47 t~L~~A~---~~g~~~~v~~Ll~-~~~~---------------------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga  101 (244)
T 3ui2_A           47 TPWWTAA---RKADEQALSQLLE-DRDV---------------------DAVDENGRTALLFVAGLGSDKCVRLLAEAGA  101 (244)
T ss_dssp             HHHHHHH---TTTCHHHHHHTTT-TCCT---------------------TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CHHHHHH---HcCCHHHHHHHHc-CCCC---------------------CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            7888884   4888888888888 6554                     3456678888888888888888888888887


Q ss_pred             CCCchHHHHHhhccCCcccccCCC-CCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHH
Q 038344           82 DAASAPLKSFLETREGSELLNAND-DNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDIL  160 (383)
Q Consensus        82 ~~~~~~l~~l~~~~~~~~~~n~~d-~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A  160 (383)
                      +                  +|.+| .+|+||||+|+..|+.++           +++|++. |++++.+|..|+||||+|
T Consensus       102 ~------------------~~~~~~~~g~t~L~~A~~~g~~~~-----------v~~Ll~~-ga~~~~~d~~g~t~l~~A  151 (244)
T 3ui2_A          102 D------------------LDHRDMRGGLTALHMAAGYVRPEV-----------VEALVEL-GADIEVEDERGLTALELA  151 (244)
T ss_dssp             C------------------TTCCCSSSCCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTTCCCTTCCCHHHHH
T ss_pred             C------------------CCcCCCCCCCCHHHHHHHcCCHHH-----------HHHHHHC-CCCCCCCCCCCCcHHHHH
Confidence            7                  77777 778888888888888888           8888886 888888888888888888


Q ss_pred             HhccC------------CcchhhHHHHHHHhcCCC
Q 038344          161 AQSKR------------DIKYWEIGELLRRARGNS  183 (383)
Q Consensus       161 ~~~~~------------~~~~~~i~~~L~~~ga~~  183 (383)
                      +....            ..++.+++++|.+++.+.
T Consensus       152 ~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~~  186 (244)
T 3ui2_A          152 REILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEY  186 (244)
T ss_dssp             HHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred             HHHHhccCCCCHHHHHHHcChHHHHHHHHHhcccc
Confidence            74211            156788999999887654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.83  E-value=4.1e-21  Score=171.41  Aligned_cols=127  Identities=21%  Similarity=0.226  Sum_probs=112.6

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEG   68 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g   68 (383)
                      ||||.|+   ..|+.++++.|++.++++ +..|.+|+||||+|+..|+             ++.+|.+|+||||+|+..|
T Consensus        39 t~L~~A~---~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~  114 (239)
T 1ycs_B           39 ALLLDSS---LEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN  114 (239)
T ss_dssp             HHHHHHH---HHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHH---HcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            7899995   499999999999999987 8889999999999999999             6788999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCC-cHHHHH--HHcCChhHHHHhhhchhhHHHHhhhccccc
Q 038344           69 HIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGM-TILHLA--VADKQIEIWITHITYKSRAIKFFTTSTAIE  145 (383)
Q Consensus        69 ~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~-TpLh~A--~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d  145 (383)
                      +.+++++|+++|++                  ++.+|..|. ||||+|  +..|+.++           +++|++. |++
T Consensus       115 ~~~~v~~Ll~~ga~------------------~~~~~~~~~~t~l~~a~~~~~g~~~~-----------~~~Ll~~-~a~  164 (239)
T 1ycs_B          115 NVQVCKFLVESGAA------------------VFAMTYSDMQTAADKCEEMEEGYTQC-----------SQFLYGV-QEK  164 (239)
T ss_dssp             CHHHHHHHHHTTCC------------------TTCCCSSSCCCHHHHCCSSSTTCCCH-----------HHHHHHH-HHH
T ss_pred             CHHHHHHHHHcCCC------------------cceecCCCCcchHHHHHHhhhccHHH-----------HHHHHHh-hhc
Confidence            99999999999988                  888888877 999999  78899999           9999996 888


Q ss_pred             cccccc---------CCCCHHHHHHh
Q 038344          146 VNAVNA---------NGFTAWDILAQ  162 (383)
Q Consensus       146 ~~~~n~---------~G~TpL~~A~~  162 (383)
                      ++..|.         .+.++++++..
T Consensus       165 ~~~~~~~~~~al~d~~~~~~~eLa~~  190 (239)
T 1ycs_B          165 MGIMNKGVIYALWDYEPQNDDELPMK  190 (239)
T ss_dssp             TTTTGGGEEEESSCBCCSSTTBCCBC
T ss_pred             ccccccceEEEEeccCCCCCCccccc
Confidence            887644         46666665544

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.82  E-value=5.4e-20  Score=152.58  Aligned_cols=112  Identities=20%  Similarity=0.244  Sum_probs=103.8

Q ss_pred             CCcHHHHHHHcCC--------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCccccc
Q 038344           37 KSSALHIASQKGK--------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLN  102 (383)
Q Consensus        37 g~TpLh~Aa~~g~--------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n  102 (383)
                      |.||||.|+..|+              ++..|.+|+||||+ +..|+.+++++|+++|++                  ++
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~------------------~~   62 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS------------------PN   62 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC------------------TT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC------------------CC
Confidence            5699999999998              45678899999999 999999999999999887                  89


Q ss_pred             CCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCC
Q 038344          103 ANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGN  182 (383)
Q Consensus       103 ~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~  182 (383)
                      .+|.+|+||||+|+..|+.++           +++|++. |++++.+|.+|+||||+|+.    .++.+++++|+++ ++
T Consensus        63 ~~~~~g~t~L~~A~~~~~~~~-----------v~~Ll~~-g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~-~~  125 (156)
T 1bd8_A           63 VQDTSGTSPVHDAARTGFLDT-----------LKVLVEH-GADVNVPDGTGALPIHLAVQ----EGHTAVVSFLAAE-SD  125 (156)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHH-----------HHHHHHT-TCCSCCCCTTSCCHHHHHHH----HTCHHHHHHHHTT-SC
T ss_pred             CcCCCCCCHHHHHHHcCcHHH-----------HHHHHHc-CCCCCCcCCCCCcHHHHHHH----hChHHHHHHHHhc-cC
Confidence            999999999999999999999           9999996 99999999999999999999    8889999999998 66


Q ss_pred             CC
Q 038344          183 SA  184 (383)
Q Consensus       183 ~~  184 (383)
                      ..
T Consensus       126 ~~  127 (156)
T 1bd8_A          126 LH  127 (156)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.82  E-value=6.3e-20  Score=169.44  Aligned_cols=136  Identities=24%  Similarity=0.228  Sum_probs=109.6

Q ss_pred             hHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHc---CCHHHHHHHHHc
Q 038344            3 ILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAME---GHIDVLEELVRA   79 (383)
Q Consensus         3 pLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~---g~~~iv~~Ll~~   79 (383)
                      +||.|   +..|+.+.++.|++.++++ +....              ....|.+|+||||+|+..   |+.+++++|+++
T Consensus       154 ~L~~A---~~~g~~~~v~~ll~~g~d~-~~~~~--------------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~  215 (301)
T 2b0o_E          154 RLWTA---ICNRDLLSVLEAFANGQDF-GQPLP--------------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQN  215 (301)
T ss_dssp             HHHHH---HHTTCHHHHHHHHHTTCCT-TSCEE--------------CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH
T ss_pred             HHhhh---hhccCHHHHHHHHhcCCcc-cccCC--------------CcccCCCCccHHHHHHHhcccCcHHHHHHHHhc
Confidence            46666   3477777777777777665 22100              001466788888888886   899999999999


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHH
Q 038344           80 KPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI  159 (383)
Q Consensus        80 ~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~  159 (383)
                      |++                  +|.+|.+|+||||+|+..|+.++           +++|++. |+|++.+|.+|.||||+
T Consensus       216 gad------------------vn~~d~~G~TpLh~A~~~g~~~~-----------v~~Ll~~-gad~~~~d~~G~TpL~~  265 (301)
T 2b0o_E          216 GGH------------------LDAKAADGNTALHYAALYNQPDC-----------LKLLLKG-RALVGTVNEAGETALDI  265 (301)
T ss_dssp             SSC------------------TTCCCTTCCCHHHHHHHTTCHHH-----------HHHHHHT-TCCCSCCCTTSCCHHHH
T ss_pred             CCC------------------CCCCCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-CCCCCCcCCCCCCHHHH
Confidence            888                  89999999999999999999999           9999996 99999999999999999


Q ss_pred             HHhccCCcchhhHHHHHHHhcCCC-CCCCCCc
Q 038344          160 LAQSKRDIKYWEIGELLRRARGNS-AKDMHLP  190 (383)
Q Consensus       160 A~~~~~~~~~~~i~~~L~~~ga~~-~~~l~~~  190 (383)
                      |+.    .++.+++++|+++|++. ..+++++
T Consensus       266 A~~----~~~~~iv~~Ll~~ga~~g~tpLh~A  293 (301)
T 2b0o_E          266 ARK----KHHKECEELLEQAQAGTFAFPLHVD  293 (301)
T ss_dssp             HHH----HTCHHHHHHHHHHHHHTTSSCCC--
T ss_pred             HHH----cCCHHHHHHHHHhcCCCCCChhHHH
Confidence            999    88899999999999875 2344443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=1.6e-19  Score=170.93  Aligned_cols=126  Identities=18%  Similarity=0.167  Sum_probs=111.3

Q ss_pred             ChHHHHHHHHHc-CCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 038344            2 TILQLAVAAALL-GHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAK   80 (383)
Q Consensus         2 TpLh~A~~Aa~~-g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~   80 (383)
                      |+||.|   +.. |+.++++.|++.|+++ +..|                  .+.+|.||||+|+..|+.+++++|+++|
T Consensus       201 t~L~~A---a~~~g~~~~v~~LL~~Gadv-n~~~------------------~~~~g~TpLh~Aa~~g~~~iv~~LL~~G  258 (368)
T 3jue_A          201 ALLFRA---SGHPPSLPTMADALAHGADV-NWVN------------------GGQDNATPLIQATAANSLLACEFLLQNG  258 (368)
T ss_dssp             HHHHHH---TSSSCCHHHHHHHHHTTCCT-TCCC------------------TTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cHHHHH---HHccCCHHHHHHHHHcCCCC-Cccc------------------cccCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            578888   447 9999999999999887 3322                  1267899999999999999999999998


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHH
Q 038344           81 PDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDIL  160 (383)
Q Consensus        81 ~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A  160 (383)
                      ++                  +|.+|.+|+||||+|+..|+.++           +++|++. |++++..|.+|.||||+|
T Consensus       259 ad------------------vn~~d~~G~TpLh~A~~~g~~~~-----------v~~LL~~-Gad~~~~d~~G~TpL~~A  308 (368)
T 3jue_A          259 AN------------------VNQADSAGRGPLHHATILGHTGL-----------ACLFLKR-GADLGARDSEGRDPLTIA  308 (368)
T ss_dssp             CC------------------TTCCCTTSCCHHHHHHHHTCHHH-----------HHHHHHT-TCCTTCCCTTSCCHHHHH
T ss_pred             CC------------------CCCCCCCCCCHHHHHHHcCcHHH-----------HHHHHHC-cCCCCCcCCCCCCHHHHH
Confidence            88                  89999999999999999999999           9999996 999999999999999999


Q ss_pred             HhccCCcchhhHHHHHHHhcCCC
Q 038344          161 AQSKRDIKYWEIGELLRRARGNS  183 (383)
Q Consensus       161 ~~~~~~~~~~~i~~~L~~~ga~~  183 (383)
                      +.    .++.+++++|+++|...
T Consensus       309 ~~----~g~~~iv~lLl~~~~~~  327 (368)
T 3jue_A          309 ME----TANADIVTLLRLAKMRE  327 (368)
T ss_dssp             HH----TTCHHHHHHHHHHHC--
T ss_pred             HH----CCCHHHHHHHHHcCCCc
Confidence            99    88999999999998654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.80  E-value=5.8e-19  Score=143.19  Aligned_cols=100  Identities=23%  Similarity=0.280  Sum_probs=94.2

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhch
Q 038344           52 ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYK  131 (383)
Q Consensus        52 ~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~  131 (383)
                      .+|.+|+||||+|+..|+.+++++|+++|++                  ++.+|..|+||||+|+..|+.++        
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------------~~~~~~~g~t~L~~A~~~~~~~~--------   58 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD------------------PNVKDHAGWTPLHEACNHGHLKV--------   58 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------------------SCCCCTTSCCHHHHHHHTTCHHH--------
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------------CCcCCCCCCCHHHHHHHcCCHHH--------
Confidence            4688999999999999999999999999887                  88999999999999999999999        


Q ss_pred             hhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          132 SRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       132 ~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                         +++|++. |++++.+|..|+||||+|+.    .++.+++++|+++|+++..
T Consensus        59 ---~~~Ll~~-g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~  104 (137)
T 3c5r_A           59 ---VELLLQH-KALVNTTGYQNDSPLHDAAK----NGHVDIVKLLLSYGASRNA  104 (137)
T ss_dssp             ---HHHHHHT-TCCTTCCCGGGCCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             ---HHHHHHc-CCcccCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCCC
Confidence               9999996 99999999999999999999    8889999999999998743

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.79  E-value=6.3e-19  Score=133.12  Aligned_cols=91  Identities=38%  Similarity=0.576  Sum_probs=82.0

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAK   80 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~   80 (383)
                      +||||+|+.   .|+.+++++|++.++++ +                    .+|.+|+||||+|+..|+.+++++|+++|
T Consensus         3 ~t~L~~A~~---~~~~~~v~~Ll~~g~~~-n--------------------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g   58 (93)
T 1n0q_A            3 RTPLHLAAR---NGHLEVVKLLLEAGADV-N--------------------AKDKNGRTPLHLAARNGHLEVVKLLLEAG   58 (93)
T ss_dssp             CCHHHHHHH---HTCHHHHHHHHHTTCCT-T--------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CcHHHHHHH---cCCHHHHHHHHHcCCCC-c--------------------ccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            699999954   99999999999999877 3                    45677889999999999999999999998


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccc
Q 038344           81 PDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIE  145 (383)
Q Consensus        81 ~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d  145 (383)
                      ++                  ++.+|.+|+||||+|+..|+.++           +++|++. |++
T Consensus        59 a~------------------~~~~d~~g~t~l~~A~~~~~~~~-----------~~~Ll~~-ga~   93 (93)
T 1n0q_A           59 AD------------------VNAKDKNGRTPLHLAARNGHLEV-----------VKLLLEA-GAY   93 (93)
T ss_dssp             CC------------------TTCCCTTSCCHHHHHHHTTCHHH-----------HHHHHHT-TCC
T ss_pred             CC------------------CCccCCCCCCHHHHHHHcCCHHH-----------HHHHHHc-CCC
Confidence            88                  89999999999999999999999           9999986 764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.79  E-value=5.6e-20  Score=157.63  Aligned_cols=116  Identities=11%  Similarity=0.041  Sum_probs=100.5

Q ss_pred             CChHHHHHHHHHcCCH----HHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------------ccccCCCC
Q 038344            1 MTILQLAVAAALLGHE----DFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------------CSATDVDG   57 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------------~~~~d~~G   57 (383)
                      +||||+|+   ..|+.    +++++|+++|+++ +.+|.+|+||||+|+..|+                   ++.+|.+|
T Consensus        39 ~T~Lh~A~---~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g  114 (186)
T 3t8k_A           39 SNILYDVL---RNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPY  114 (186)
T ss_dssp             TTHHHHHT---TCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGG
T ss_pred             CCHHHHHH---HcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCc
Confidence            59999995   47775    5999999999998 8899999999999998875                   67889999


Q ss_pred             C-cHHHHHHHcC-----CHHHHHHHHH-cCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhc
Q 038344           58 R-NALHLAAMEG-----HIDVLEELVR-AKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITY  130 (383)
Q Consensus        58 ~-tpLh~A~~~g-----~~~iv~~Ll~-~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~  130 (383)
                      + ||||+|+..+     +.+++++|++ +|++                  +|.+|.+|+||||+|+..|+.++       
T Consensus       115 ~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad------------------~~~~d~~G~TpL~~A~~~~~~~~-------  169 (186)
T 3t8k_A          115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ------------------LLIKDKWGLTALEFVKRCQKPIA-------  169 (186)
T ss_dssp             TBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC------------------TTCCCTTSCCHHHHHHTTTCHHH-------
T ss_pred             CchHHHHHHHcCCChhhHHHHHHHHHHhcCCC------------------CcccCCCCCCHHHHHHHcCCHHH-------
Confidence            9 9999999944     4679999999 8888                  89999999999999999999999       


Q ss_pred             hhhHHHHhhhcccccccccc
Q 038344          131 KSRAIKFFTTSTAIEVNAVN  150 (383)
Q Consensus       131 ~~~~v~~Ll~~~g~d~~~~n  150 (383)
                          +++|.+. ..+.+.++
T Consensus       170 ----v~~L~~~-~~~~~~~~  184 (186)
T 3t8k_A          170 ----LKMMEDY-IKKYNLKE  184 (186)
T ss_dssp             ----HHHHHHH-HHHHTCCC
T ss_pred             ----HHHHHHH-HHHHhccc
Confidence                8888774 55555544

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.79  E-value=2.3e-21  Score=184.13  Aligned_cols=137  Identities=16%  Similarity=0.155  Sum_probs=106.7

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcc--cccCCCCCCcHHHHHHHcCC-----------c-----cccCCCCCcHHHH
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPEL--ARKSDSRKSSALHIASQKGK-----------C-----SATDVDGRNALHL   63 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~g~TpLh~Aa~~g~-----------~-----~~~d~~G~tpLh~   63 (383)
                      ||||+|   |..|+.+++++|++.++..  .+..|..|.||||+|+..|+           .     +..+.+ .||||+
T Consensus        94 T~Lh~A---a~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~  169 (376)
T 2aja_A           94 VICFVA---AITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL  169 (376)
T ss_dssp             HHHHHH---HHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH
T ss_pred             CHHHHH---HHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH
Confidence            789998   4589999999999887622  12335567889999999998           1     122223 789999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccC--CCCCCCcHHHHHH-HcCChhHHHHhhhchhhHHHHhhh
Q 038344           64 AAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNA--NDDNGMTILHLAV-ADKQIEIWITHITYKSRAIKFFTT  140 (383)
Q Consensus        64 A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~--~d~~g~TpLh~A~-~~~~~~~~~~~l~~~~~~v~~Ll~  140 (383)
                      |+.+|+.+++++|+++|++                  ++.  +|.+|+||||+|+ .+|+.++           +++|++
T Consensus       170 Aa~~G~~eiv~~Ll~~ga~------------------~~~~~~d~~g~TpL~~Aa~~~G~~ei-----------v~~Ll~  220 (376)
T 2aja_A          170 AAENGHLHVLNRLCELAPT------------------EATAMIQAENYYAFRWAAVGRGHHNV-----------INFLLD  220 (376)
T ss_dssp             HHHTTCHHHHHHHHHSCGG------------------GHHHHHHHHHHHHHHHHHSTTCCHHH-----------HHHHTT
T ss_pred             HHHCCCHHHHHHHHHcCCc------------------cchhccCCCCCCHHHHHHHHCCCHHH-----------HHHHHh
Confidence            9999999999999998876                  555  7788899999999 9999999           999988


Q ss_pred             cccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCC
Q 038344          141 STAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNS  183 (383)
Q Consensus       141 ~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~  183 (383)
                      . |.+       |.||||+|+.    .++.+++++|+++|++.
T Consensus       221 ~-ga~-------~~taL~~Aa~----~g~~evv~lL~~~ga~~  251 (376)
T 2aja_A          221 C-PVM-------LAYAEIHEFE----YGEKYVNPFIARHVNRL  251 (376)
T ss_dssp             S-HHH-------HHHHHHCTTT----TTTTTHHHHHHHHHHHH
T ss_pred             C-CCc-------cchHHHHHHH----CCCHHHHHHHHhcCccc
Confidence            4 642       7899999988    78888999999988765

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.79  E-value=1.7e-19  Score=141.80  Aligned_cols=99  Identities=30%  Similarity=0.398  Sum_probs=94.1

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhch
Q 038344           52 ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYK  131 (383)
Q Consensus        52 ~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~  131 (383)
                      .+|.+|+||||+|+..|+.+++++|++++++                  ++.+|..|+||||+|+..++.++        
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------------~~~~d~~g~t~L~~A~~~~~~~~--------   57 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD------------------VNARSKDGNTPLHLAAKNGHAEI--------   57 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC------------------SSCCCSSSCCTTHHHHTTTCHHH--------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------------CCCcCCCCCCHHHHHHHcCcHHH--------
Confidence            4789999999999999999999999998887                  89999999999999999999999        


Q ss_pred             hhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          132 SRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       132 ~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                         +++|++. |++++.+|.+|.||||+|+.    .++.+++++|+++|++++
T Consensus        58 ---~~~Ll~~-g~~~~~~d~~g~tpl~~A~~----~~~~~~~~~Ll~~ga~~n  102 (115)
T 2l6b_A           58 ---VKLLLAK-GADVNARSKDGNTPEHLAKK----NGHHEIVKLLDAKGADVN  102 (115)
T ss_dssp             ---HHHHTTT-TCCTTCCCTTCCCTTHHHHT----TTCHHHHHHHHTTSSSHH
T ss_pred             ---HHHHHHc-CCCCcccCCCCCCHHHHHHH----CCCHHHHHHHHHcCCCCC
Confidence               9999996 99999999999999999999    788999999999999974

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.78  E-value=1.3e-18  Score=138.47  Aligned_cols=97  Identities=20%  Similarity=0.207  Sum_probs=89.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhh
Q 038344           54 DVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSR  133 (383)
Q Consensus        54 d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~  133 (383)
                      +..|.||||.|+..|+.+++++|++.+++                  +|.+|.+|+||||+|+..|+.++          
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~------------------~~~~~~~g~t~L~~A~~~~~~~~----------   55 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED------------------VNRTLEGGRKPLHYAADCGQLEI----------   55 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC------------------TTSCCTTSSCHHHHHHHTTCHHH----------
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC------------------cCccCCCCCcHHHHHHHcCCHHH----------
Confidence            56789999999999999999999999887                  89999999999999999999999          


Q ss_pred             HHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          134 AIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       134 ~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                       +++|++. |++++.+|.+|+||||+|+.    .++.+++++|+++|+++.
T Consensus        56 -v~~Ll~~-g~~~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~  100 (123)
T 3aaa_C           56 -LEFLLLK-GADINAPDKHHITPLLSAVY----EGHVSCVKLLLSKGADKT  100 (123)
T ss_dssp             -HHHHHTT-TCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTT
T ss_pred             -HHHHHHc-CCCCCcCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence             9999996 99999999999999999999    888999999999999874

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.77  E-value=6.1e-19  Score=143.01  Aligned_cols=100  Identities=16%  Similarity=0.165  Sum_probs=94.2

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhh
Q 038344           50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHIT  129 (383)
Q Consensus        50 ~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~  129 (383)
                      ++.+|.+|.||||+|+..|+.+++++|+++|++                  +|.+|.+|+||||+|+. |+.++      
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------~~~~~~~g~t~L~~A~~-~~~~~------   59 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGAD------------------PNALNRFGRRPIQVMMM-GSAQV------   59 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC------------------TTCCCTTCCTTTTTSTT-SCHHH------
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC------------------cCCcCCCCCCHHHHHHc-CCHHH------
Confidence            467788999999999999999999999999887                  89999999999999999 99999      


Q ss_pred             chhhHHHHhhhcccccccccccC-CCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          130 YKSRAIKFFTTSTAIEVNAVNAN-GFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       130 ~~~~~v~~Ll~~~g~d~~~~n~~-G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                           +++|++. |++++.+|.. |.||||+|+.    .++.+++++|+++|+++.
T Consensus        60 -----v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~  105 (136)
T 1d9s_A           60 -----AELLLLH-GAEPNCADPATLTRPVHDAAR----EGFLDTLVVLHRAGARLD  105 (136)
T ss_dssp             -----HHHHHHH-TCCSSCCBTTTTBCHHHHHHH----HTCHHHHHHHHHTCCCCC
T ss_pred             -----HHHHHHC-CCCCCCcCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence                 9999996 9999999999 9999999999    888999999999999874

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.77  E-value=5.2e-19  Score=138.95  Aligned_cols=103  Identities=31%  Similarity=0.430  Sum_probs=88.9

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAK   80 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~   80 (383)
                      +||||+|+.   .|+.++++.|++.++++                     +.+|.+|.||||+|+..|+.+++++|+++|
T Consensus        10 ~t~L~~A~~---~~~~~~~~~Ll~~g~~~---------------------~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g   65 (115)
T 2l6b_A           10 NTPLHNAAK---NGHAEEVKKLLSKGADV---------------------NARSKDGNTPLHLAAKNGHAEIVKLLLAKG   65 (115)
T ss_dssp             CCHHHHHHH---HTCHHHHHHHTTTTCCS---------------------SCCCSSSCCTTHHHHTTTCHHHHHHHTTTT
T ss_pred             CCHHHHHHH---cCCHHHHHHHHHcCCCC---------------------CCcCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            488888854   78888888888887765                     345677889999999999999999999998


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHH
Q 038344           81 PDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAW  157 (383)
Q Consensus        81 ~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL  157 (383)
                      ++                  ++.+|.+|+||||+|+..++.++           +++|++. |+|+|..+..|.||-
T Consensus        66 ~~------------------~~~~d~~g~tpl~~A~~~~~~~~-----------~~~Ll~~-ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           66 AD------------------VNARSKDGNTPEHLAKKNGHHEI-----------VKLLDAK-GADVNARSWGSSHHH  112 (115)
T ss_dssp             CC------------------TTCCCTTCCCTTHHHHTTTCHHH-----------HHHHHTT-SSSHHHHSCCCC---
T ss_pred             CC------------------CcccCCCCCCHHHHHHHCCCHHH-----------HHHHHHc-CCCCCcCCccccccc
Confidence            87                  89999999999999999999999           9999996 999999999999884

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.75  E-value=1.3e-18  Score=153.11  Aligned_cols=101  Identities=28%  Similarity=0.274  Sum_probs=94.4

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhch
Q 038344           52 ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYK  131 (383)
Q Consensus        52 ~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~  131 (383)
                      ..|.+|.||||+|+..|+.+++++|++.|++                  +|.+|.+|+||||+|+..|+.++        
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------------~~~~~~~g~t~L~~A~~~~~~~~--------  121 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVG------------------VNGLDKAGSTALYWACHGGHKDI--------  121 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCC------------------TTCCCTTSCCHHHHHHHTTCHHH--------
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCC------------------ccccCCCCCCHHHHHHHcCCHHH--------
Confidence            3566789999999999999999999998887                  89999999999999999999999        


Q ss_pred             hhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          132 SRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       132 ~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                         +++|++..|++++.+|.+|+||||+|+.    .++.+++++|+++|++...
T Consensus       122 ---v~~Ll~~~g~~~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~~  168 (222)
T 3ehr_A          122 ---VEMLFTQPNIELNQQNKLGDTALHAAAW----KGYADIVQLLLAKGARTDL  168 (222)
T ss_dssp             ---HHHHTTSTTCCCCCCCTTSCCHHHHHHH----HTCHHHHHHHHHHTCCSCC
T ss_pred             ---HHHHHcCCCCCccccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCcc
Confidence               9999996699999999999999999999    8899999999999999854

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.74  E-value=4.7e-18  Score=137.72  Aligned_cols=98  Identities=34%  Similarity=0.409  Sum_probs=91.0

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchh
Q 038344           53 TDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKS  132 (383)
Q Consensus        53 ~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~  132 (383)
                      ....|.||||.|+..|+.+++++|+++|++                  +|.+|.+|+||||+|+..|+.++         
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~------------------~~~~~~~g~t~L~~A~~~~~~~~---------   62 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGAD------------------VNAKDEYGLTPLYLATAHGHLEI---------   62 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCC------------------TTCCCTTSCCHHHHHHHHTCHHH---------
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCC------------------CCCcCCCCCCHHHHHHHcCCHHH---------
Confidence            345688999999999999999999999887                  89999999999999999999999         


Q ss_pred             hHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          133 RAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       133 ~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                        +++|++. |++++..|.+|.||||+|+.    .++.+++++|+++|++..
T Consensus        63 --v~~Ll~~-g~~~~~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~  107 (136)
T 2jab_A           63 --VEVLLKN-GADVNAVDAIGFTPLHLAAF----IGHLEIAEVLLKHGADVN  107 (136)
T ss_dssp             --HHHHHHT-TCCTTCCCTTCCCHHHHHHH----HTCHHHHHHHHHTTCCTT
T ss_pred             --HHHHHHc-CCCCCcCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCc
Confidence              9999996 99999999999999999999    888999999999999874

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.74  E-value=5.6e-18  Score=150.08  Aligned_cols=115  Identities=22%  Similarity=0.299  Sum_probs=95.4

Q ss_pred             HHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCc
Q 038344           19 VNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGS   98 (383)
Q Consensus        19 v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~   98 (383)
                      ++.|++++++. +..+                 ..+.+|.||||.|+..|+.+++++|++.|++                
T Consensus         1 v~~ll~~~~~~-~~~~-----------------~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~----------------   46 (229)
T 2vge_A            1 MRSVLRKAGSP-RKAR-----------------RARLNPLVLLLDAALTGELEVVQQAVKEMND----------------   46 (229)
T ss_dssp             ---------CC-CCCC-----------------CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC----------------
T ss_pred             CeehhccCCCC-cccc-----------------ccccchhHHHHHHHHcCCHHHHHHHHhcCCC----------------
Confidence            35677777766 3322                 2456678999999999999999999999887                


Q ss_pred             ccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHH
Q 038344           99 ELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRR  178 (383)
Q Consensus        99 ~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~  178 (383)
                        +|.+|.+|+||||+|+..|+.++           +++|++. |+++|.+|.+|+||||+|+.    .++.+++++|++
T Consensus        47 --~~~~d~~g~tpLh~A~~~g~~~~-----------v~~Ll~~-ga~~n~~d~~g~tpLh~A~~----~g~~~~v~~Ll~  108 (229)
T 2vge_A           47 --PSQPNEEGITALHNAICGANYSI-----------VDFLITA-GANVNSPDSHGWTPLHCAAS----CNDTVICMALVQ  108 (229)
T ss_dssp             --TTCCCTTSCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHT
T ss_pred             --CCCCCCCCCCHHHHHHHcCCHHH-----------HHHHHHC-CCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHH
Confidence              89999999999999999999999           9999996 99999999999999999999    889999999999


Q ss_pred             hcCCCCC
Q 038344          179 ARGNSAK  185 (383)
Q Consensus       179 ~ga~~~~  185 (383)
                      +|++...
T Consensus       109 ~ga~~~~  115 (229)
T 2vge_A          109 HGAAIFA  115 (229)
T ss_dssp             TTCCTTC
T ss_pred             cCCCccc
Confidence            9998753

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.73  E-value=6.9e-18  Score=131.65  Aligned_cols=92  Identities=32%  Similarity=0.377  Sum_probs=83.9

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhc
Q 038344           51 SATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITY  130 (383)
Q Consensus        51 ~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~  130 (383)
                      ...|.+|.||||+|+..|+.+++++|+++|++                  +|.+|..|+||||+|+..|+.++       
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------------i~~~d~~g~tpLh~A~~~~~~~~-------   72 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGAD------------------VAAKDKNGSTPLHLAARNGHLEV-------   72 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCC------------------TTCCCTTCCCHHHHHHHTTCHHH-------
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCC------------------CCccCCCCCCHHHHHHHcCCHHH-------
Confidence            45688999999999999999999999999887                  89999999999999999999999       


Q ss_pred             hhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHH
Q 038344          131 KSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELL  176 (383)
Q Consensus       131 ~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L  176 (383)
                          +++|++. |++++.+|..|+||||+|+.    .++.+++++|
T Consensus        73 ----v~~Ll~~-ga~~~~~d~~g~tpl~~A~~----~~~~~~~~~L  109 (110)
T 2zgd_A           73 ----VKLLLEA-GADVXAQDKFGKTAFDISID----NGNEDLAEIL  109 (110)
T ss_dssp             ----HHHHHHT-TCCTTCCCTTSCCHHHHHHH----HTCHHHHHHH
T ss_pred             ----HHHHHHc-CCCccccccCCCcHHHHHHH----cCCHHHHHHh
Confidence                9999996 99999999999999999999    7888898876

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.73  E-value=2.4e-17  Score=130.83  Aligned_cols=95  Identities=38%  Similarity=0.565  Sum_probs=90.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHH
Q 038344           56 DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAI  135 (383)
Q Consensus        56 ~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v  135 (383)
                      +|+||||.|++.|+.+++++|++++++                  ++.+|..|.||||+|+..++.++           +
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~------------------~~~~~~~g~t~L~~A~~~~~~~~-----------~   51 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD------------------VNAKDKNGRTPLHLAARNGHLEV-----------V   51 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC------------------TTCCCTTSCCHHHHHHHHTCHHH-----------H
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC------------------CCCcCCCCCcHHHHHHHcCcHHH-----------H
Confidence            589999999999999999999999887                  88899999999999999999999           9


Q ss_pred             HHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          136 KFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       136 ~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      ++|++. |++++.+|..|.||||+|+.    .++.+++++|+++|+++.
T Consensus        52 ~~Ll~~-g~~~~~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~g~~~~   95 (126)
T 1n0r_A           52 KLLLEA-GADVNAKDKNGRTPLHLAAR----NGHLEVVKLLLEAGADVN   95 (126)
T ss_dssp             HHHHHT-TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHc-CCCCcccCCCCCcHHHHHHH----cChHHHHHHHHHcCCCCc
Confidence            999996 99999999999999999999    888999999999999874

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.71  E-value=8.7e-18  Score=155.06  Aligned_cols=105  Identities=23%  Similarity=0.246  Sum_probs=86.8

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAK   80 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~   80 (383)
                      +||||+|+..+..|+.+++++|++.|+++                     +.+|.+|+||||+|+..|+.+++++|+++|
T Consensus       191 ~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv---------------------n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g  249 (301)
T 2b0o_E          191 ELVLHLAVKVANQASLPLVDFIIQNGGHL---------------------DAKAADGNTALHYAALYNQPDCLKLLLKGR  249 (301)
T ss_dssp             ECHHHHHHHTCCTTTHHHHHHHHHHSSCT---------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccHHHHHHHhcccCcHHHHHHHHhcCCCC---------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            37888886522237888888888888776                     345778899999999999999999999998


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHH
Q 038344           81 PDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDIL  160 (383)
Q Consensus        81 ~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A  160 (383)
                      ++                  ++.+|.+|+||||+|+..|+.++           +++|++. |++      .|.||||+|
T Consensus       250 ad------------------~~~~d~~G~TpL~~A~~~~~~~i-----------v~~Ll~~-ga~------~g~tpLh~A  293 (301)
T 2b0o_E          250 AL------------------VGTVNEAGETALDIARKKHHKEC-----------EELLEQA-QAG------TFAFPLHVD  293 (301)
T ss_dssp             CC------------------CSCCCTTSCCHHHHHHHHTCHHH-----------HHHHHHH-HHH------TTSSCCC--
T ss_pred             CC------------------CCCcCCCCCCHHHHHHHcCCHHH-----------HHHHHHh-cCC------CCCChhHHH
Confidence            88                  89999999999999999999999           9999986 765      689999999


Q ss_pred             Hh
Q 038344          161 AQ  162 (383)
Q Consensus       161 ~~  162 (383)
                      +.
T Consensus       294 ~~  295 (301)
T 2b0o_E          294 YS  295 (301)
T ss_dssp             --
T ss_pred             Hh
Confidence            98

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.70  E-value=1.9e-17  Score=141.26  Aligned_cols=98  Identities=18%  Similarity=0.207  Sum_probs=91.3

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchh
Q 038344           53 TDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKS  132 (383)
Q Consensus        53 ~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~  132 (383)
                      .|.+|.||||.|+..|+.++++.|++ +.+                  +|.+|.+|+||||+|+..|+.++         
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~------------------~~~~d~~g~t~L~~A~~~~~~~~---------   91 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRD------------------VDAVDENGRTALLFVAGLGSDKC---------   91 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSC------------------TTCCCTTSCCHHHHHHHHTCHHH---------
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCC------------------CCCcCCCCCCHHHHHHHcCCHHH---------
Confidence            35679999999999999999999999 776                  89999999999999999999999         


Q ss_pred             hHHHHhhhcccccccccc-cCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          133 RAIKFFTTSTAIEVNAVN-ANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       133 ~~v~~Ll~~~g~d~~~~n-~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                        +++|++. |+++|.+| .+|+||||+|+.    .++.+++++|+++|+++..
T Consensus        92 --v~~Ll~~-ga~~~~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~~  138 (183)
T 3deo_A           92 --VRLLAEA-GADLDHRDMRGGLTALHMAAG----YVRPEVVEALVELGADIEV  138 (183)
T ss_dssp             --HHHHHHT-TCCTTCCCSSSSCCHHHHHHH----TTCHHHHHHHHHHTCCTTC
T ss_pred             --HHHHHHc-CCCCCcCCCCCCCCHHHHHHh----cCcHHHHHHHHHcCCCCcC
Confidence              9999996 99999998 899999999999    8899999999999999853

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.69  E-value=4.3e-18  Score=152.27  Aligned_cols=115  Identities=17%  Similarity=0.200  Sum_probs=99.7

Q ss_pred             CCCcHHHHHHHcCC----------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCC
Q 038344           36 RKSSALHIASQKGK----------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNAND  105 (383)
Q Consensus        36 ~g~TpLh~Aa~~g~----------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d  105 (383)
                      .+.+++.+++..|+          ....+.+|.||||.|++.|+.++++.|++ +.+                  +|.+|
T Consensus        14 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~------------------~~~~d   74 (244)
T 3ui2_A           14 EGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRD------------------VDAVD   74 (244)
T ss_dssp             TTEEEEEEEESSCCCCEEEEGGGSCHHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCC------------------TTCBC
T ss_pred             CCccHHHHHHHcCCCcccccccccccccccCCCCHHHHHHHcCCHHHHHHHHc-CCC------------------CCCcC
Confidence            44555555555555          11234579999999999999999999999 776                  89999


Q ss_pred             CCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccc-cCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          106 DNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVN-ANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       106 ~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n-~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      .+|+||||+|+..|+.++           +++|++. |+++|.+| ..|.||||+|+.    .++.+++++|+++|++++
T Consensus        75 ~~g~t~L~~A~~~g~~~~-----------v~~Ll~~-ga~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~ga~~~  138 (244)
T 3ui2_A           75 ENGRTALLFVAGLGSDKC-----------VRLLAEA-GADLDHRDMRGGLTALHMAAG----YVRPEVVEALVELGADIE  138 (244)
T ss_dssp             TTSCBHHHHHHHHTCHHH-----------HHHHHHT-TCCTTCCCSSSCCCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCHHHHHHHCCCHHH-----------HHHHHHc-CCCCCcCCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCC
Confidence            999999999999999999           9999996 99999998 889999999999    889999999999999985


Q ss_pred             C
Q 038344          185 K  185 (383)
Q Consensus       185 ~  185 (383)
                      .
T Consensus       139 ~  139 (244)
T 3ui2_A          139 V  139 (244)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.68  E-value=4.3e-18  Score=161.59  Aligned_cols=130  Identities=17%  Similarity=0.245  Sum_probs=106.3

Q ss_pred             cCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------c---------cccCCCCCcHHHHHHHcCCHHHHHHH
Q 038344           13 LGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------C---------SATDVDGRNALHLAAMEGHIDVLEEL   76 (383)
Q Consensus        13 ~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------~---------~~~d~~G~tpLh~A~~~g~~~iv~~L   76 (383)
                      .++.++++++++++.+        ++||||+|+..|+       +         ...|..|.||||+|+++|+.+++++|
T Consensus        76 ~~~~~~~~~l~~~g~~--------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~L  147 (376)
T 2aja_A           76 RNAKQLWSDAHKKGIK--------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRL  147 (376)
T ss_dssp             TTCTTHHHHHHHHTCC--------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCC--------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHH
Confidence            4667777777776654        4599999999999       1         13345688999999999999999999


Q ss_pred             HHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccc--cccCCC
Q 038344           77 VRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNA--VNANGF  154 (383)
Q Consensus        77 l~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~--~n~~G~  154 (383)
                      +++|++...             ..++.+  + +||||+|+..|+.++           +++|++. |++++.  .|.+|.
T Consensus       148 l~~gad~~~-------------~~i~~~--~-~TpLh~Aa~~G~~ei-----------v~~Ll~~-ga~~~~~~~d~~g~  199 (376)
T 2aja_A          148 CELAPTEIM-------------AMIQAE--N-YHAFRLAAENGHLHV-----------LNRLCEL-APTEATAMIQAENY  199 (376)
T ss_dssp             HHSCTTTHH-------------HHHSHH--H-HHHHHHHHHTTCHHH-----------HHHHHHS-CGGGHHHHHHHHHH
T ss_pred             HhCCCCccc-------------cccCCC--C-CCHHHHHHHCCCHHH-----------HHHHHHc-CCccchhccCCCCC
Confidence            999975210             012323  3 999999999999999           9999996 999988  999999


Q ss_pred             CHHHHHH-hccCCcchhhHHHHHHHhcCC
Q 038344          155 TAWDILA-QSKRDIKYWEIGELLRRARGN  182 (383)
Q Consensus       155 TpL~~A~-~~~~~~~~~~i~~~L~~~ga~  182 (383)
                      ||||+|+ .    .++.+++++|+++|++
T Consensus       200 TpL~~Aa~~----~G~~eiv~~Ll~~ga~  224 (376)
T 2aja_A          200 YAFRWAAVG----RGHHNVINFLLDCPVM  224 (376)
T ss_dssp             HHHHHHHST----TCCHHHHHHHTTSHHH
T ss_pred             CHHHHHHHH----CCCHHHHHHHHhCCCc
Confidence            9999999 9    8999999999998864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.62  E-value=1.3e-15  Score=138.73  Aligned_cols=66  Identities=21%  Similarity=0.299  Sum_probs=60.2

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhh
Q 038344           50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHIT  129 (383)
Q Consensus        50 ~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~  129 (383)
                      ++.+|.+|+||||+|+..|+.+++++|+++|++                  +|.+|.+|+||||+|+..|+.++      
T Consensus       198 in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad------------------~~~~d~~g~tpL~~A~~~~~~~~------  253 (278)
T 1dcq_A          198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS------------------IEIANESGETPLDIAKRLKHEHC------  253 (278)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------------TTCCCTTSCCHHHHHHHTTCHHH------
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------------CCCccCCCCCHHHHHHHcCCHHH------
Confidence            355778899999999999999999999999988                  89999999999999999999999      


Q ss_pred             chhhHHHHhhhccccc
Q 038344          130 YKSRAIKFFTTSTAIE  145 (383)
Q Consensus       130 ~~~~~v~~Ll~~~g~d  145 (383)
                           +++|++. |++
T Consensus       254 -----v~~Ll~~-ga~  263 (278)
T 1dcq_A          254 -----EELLTQA-LSG  263 (278)
T ss_dssp             -----HHHHHHH-HTT
T ss_pred             -----HHHHHHc-CCC
Confidence                 9999986 664

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.62  E-value=1.7e-15  Score=117.90  Aligned_cols=80  Identities=29%  Similarity=0.480  Sum_probs=70.0

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKP   81 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~   81 (383)
                      ||||+|+   ..|+.+++++|++.++++                     +.+|.+|+||||+|+..|+.+++++|+++|+
T Consensus        26 t~L~~A~---~~g~~~~v~~Ll~~g~~i---------------------~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga   81 (110)
T 2zgd_A           26 KKLLEAA---RAGQDDEVRILMANGADV---------------------AAKDKNGSTPLHLAARNGHLEVVKLLLEAGA   81 (110)
T ss_dssp             HHHHHHH---HHTCHHHHHHHHHTTCCT---------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             hHHHHHH---HcCCHHHHHHHHHcCCCC---------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            6788874   478888888888887765                     3457788999999999999999999999988


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhH
Q 038344           82 DAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI  123 (383)
Q Consensus        82 ~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~  123 (383)
                      +                  ++.+|.+|+||||+|+..|+.++
T Consensus        82 ~------------------~~~~d~~g~tpl~~A~~~~~~~~  105 (110)
T 2zgd_A           82 D------------------VXAQDKFGKTAFDISIDNGNEDL  105 (110)
T ss_dssp             C------------------TTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             C------------------ccccccCCCcHHHHHHHcCCHHH
Confidence            7                  89999999999999999999999

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.52  E-value=2.5e-14  Score=135.24  Aligned_cols=98  Identities=13%  Similarity=0.129  Sum_probs=90.3

Q ss_pred             CCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCC--CCCCcHHHHHHHcCChhHHHHhhhc
Q 038344           54 DVDGRNALHLAAME-GHIDVLEELVRAKPDAASAPLKSFLETREGSELLNAND--DNGMTILHLAVADKQIEIWITHITY  130 (383)
Q Consensus        54 d~~G~tpLh~A~~~-g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d--~~g~TpLh~A~~~~~~~~~~~~l~~  130 (383)
                      +..+.||||.|+.. |+.++++.|+++|++                  +|..|  .+|.||||+|+..|+.++       
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad------------------vn~~~~~~~g~TpLh~Aa~~g~~~i-------  250 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGAD------------------VNWVNGGQDNATPLIQATAANSLLA-------  250 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCC------------------TTCCCTTTTCCCHHHHHHHTTCHHH-------
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCC------------------CCccccccCCCCHHHHHHHCCCHHH-------
Confidence            34566899999999 999999999999988                  78887  899999999999999999       


Q ss_pred             hhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          131 KSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       131 ~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                          +++|++. |+|+|..|.+|+||||+|+.    .++.+++++|+++|++...
T Consensus       251 ----v~~LL~~-Gadvn~~d~~G~TpLh~A~~----~g~~~~v~~LL~~Gad~~~  296 (368)
T 3jue_A          251 ----CEFLLQN-GANVNQADSAGRGPLHHATI----LGHTGLACLFLKRGADLGA  296 (368)
T ss_dssp             ----HHHHHHT-TCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             ----HHHHHHc-CCCCCCCCCCCCCHHHHHHH----cCcHHHHHHHHHCcCCCCC
Confidence                9999996 99999999999999999999    8889999999999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	383
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.004
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.002
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.003
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.3 bits (142), Expect = 1e-10
 Identities = 27/138 (19%), Positives = 41/138 (29%), Gaps = 15/138 (10%)

Query: 54  DVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILH 113
             DG  ALHLA +  H   L+ L+                     E L+  +D G T LH
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGH---------------EYLDLQNDLGQTALH 50

Query: 114 LAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIG 173
           LA    +           +  +            A      T   +L Q +         
Sbjct: 51  LAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD 110

Query: 174 ELLRRARGNSAKDMHLPA 191
             L +++  +    H PA
Sbjct: 111 TYLTQSQDCTPDTSHAPA 128

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 9e-09
 Identities = 23/131 (17%), Positives = 36/131 (27%), Gaps = 31/131 (23%)

Query: 40  ALHIASQKGKCS-------------ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA 86
            LH+AS  G                 ++V     LH+AA  GH +V + L++ K      
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK---- 58

Query: 87  PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEV 146
                         +NA   +  T LH A       +    +   +      T       
Sbjct: 59  --------------VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLH 104

Query: 147 NAVNANGFTAW 157
            A         
Sbjct: 105 IAAREGHVETV 115

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 44/193 (22%)

Query: 23  LCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEGH 69
           L Q    A     +  + LH+A+Q+G               +  +  G   LHL A EGH
Sbjct: 217 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH 276

Query: 70  IDVLEELVR--AKPDAASAPLKSFLETREGSELL-------------NANDDNGMTILHL 114
           + V + L++     DA +    + L        +             NA    G + LH 
Sbjct: 277 VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ 336

Query: 115 AVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGE 174
           A      +I           +     + A   N V+++G T   I  +      Y  + +
Sbjct: 337 AAQQGHTDI-----------VTLLLKNGA-SPNEVSSDGTTPLAIAKRL----GYISVTD 380

Query: 175 LLRRARGNSAKDM 187
           +L+     ++  +
Sbjct: 381 VLKVVTDETSFVL 393

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 36/193 (18%), Positives = 64/193 (33%), Gaps = 44/193 (22%)

Query: 1   MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG------------ 48
           +T L +A   + +GH   V + L Q+      S+ +  + LH+A++ G            
Sbjct: 1   LTPLHVA---SFMGHLPIV-KNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 56

Query: 49  -KCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLK---------------SFL 92
            K +A   D +  LH AA  GH ++++ L+    +   A                  + L
Sbjct: 57  AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 116

Query: 93  ETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNAN 152
              E           G T LH+A    ++ +    +   +              NA   N
Sbjct: 117 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA------------HPNAAGKN 164

Query: 153 GFTAWDILAQSKR 165
           G T   +      
Sbjct: 165 GLTPLHVAVHHNN 177

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 8e-04
 Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 31/165 (18%)

Query: 45  SQKGKCSATDVDGRNALHLAAMEGHIDVLEELVR--AKPDAASAPLKSFLETR------- 95
            +    +A   +G   LH+A    ++D+++ L+     P + +    + L          
Sbjct: 153 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVE 212

Query: 96  ------EGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAV 149
                 +     NA    G+T LHLA  +   E+    ++ +               N  
Sbjct: 213 VARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ------------ANGNLG 260

Query: 150 NANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAKDMHLPANEL 194
           N +G T   ++AQ      +  + ++L +          +    L
Sbjct: 261 NKSGLTPLHLVAQE----GHVPVADVLIKHGVMVDATTRMGYTPL 301

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 9e-04
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 18/81 (22%)

Query: 34  DSRKSSALHIASQKGKCS-------------ATDVDGRNALHLAAMEGHIDVLEELVRAK 80
                S LH A+Q+G                    DG   L +A   G+I V + L    
Sbjct: 327 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT 386

Query: 81  PDAASAPLK-----SFLETRE 96
            + +   +      SF ET +
Sbjct: 387 DETSFVLVSDKHRMSFPETVD 407

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 7e-07
 Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 36/159 (22%)

Query: 50  CSATDVDGRNALHLAAMEGHIDVLEELVR---AKPDAASAPLKSFLETREGSEL------ 100
                  G  AL  AA +GH++VL+ L+    A  +A     ++ L     S        
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 101 -----------LNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAV 149
                      +N   + G T L LAV  K + +           ++       IE+N  
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL-----------VQRLLEQEHIEINDT 249

Query: 150 NANGFTAWDILAQSKRDIKYWEIGELLRRARGN-SAKDM 187
           +++G TA  +  + K      +I ELL +   +    D+
Sbjct: 250 DSDGKTALLLAVELKLK----KIAELLCKRGASTDCGDL 284

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 3e-05
 Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 19/117 (16%)

Query: 55  VDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNA-NDDNGMTILH 113
           V+  + L  A     +D++++L+    +                  +N   ++ G T LH
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGAN------------------VNFQEEEGGWTPLH 44

Query: 114 LAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYW 170
            AV   + +I    + + +  +          + A  A       +      D+   
Sbjct: 45  NAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC 101

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 17/118 (14%)

Query: 6   LAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAA 65
           L    A +   D +         L+      ++    +       +     G+  L LA 
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227

Query: 66  MEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI 123
            + H+ +++ L+                  +    +N  D +G T L LAV  K  +I
Sbjct: 228 EKKHLGLVQRLL-----------------EQEHIEINDTDSDGKTALLLAVELKLKKI 268

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 16/85 (18%)

Query: 15  HEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS--------------ATDVDGRNA 60
             + +  +L            R  + L +A +K                   TD DG+ A
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 256

Query: 61  LHLAAMEGHIDVLEELVR--AKPDA 83
           L LA       + E L +  A  D 
Sbjct: 257 LLLAVELKLKKIAELLCKRGASTDC 281

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 8e-07
 Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 14/115 (12%)

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
           DG   LH+A ++G++  +  LV                        +  ++   T LHLA
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL--------------DIYNNLRQTPLHLA 47

Query: 116 VADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYW 170
           V      +    +T  +  +            A      T    L  S       
Sbjct: 48  VITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 102

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 18/82 (21%)

Query: 42  HIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELL 101
            +       +A    G +ALH A+  G + ++  LVR+  D                   
Sbjct: 162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD------------------S 203

Query: 102 NANDDNGMTILHLAVADKQIEI 123
           +  + +  T L +A + + I+I
Sbjct: 204 SLKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 13/76 (17%)

Query: 11  ALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATDVDG 57
           A+  +   + ++L Q            SSALH AS +G               S  +   
Sbjct: 151 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN 210

Query: 58  RNALHLAAMEGHIDVL 73
              L +A     ID+L
Sbjct: 211 DTPLMVARSRRVIDIL 226

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 18/74 (24%)

Query: 50  CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGM 109
               D DG+  + LAA EG I+V+  L++                      + A D    
Sbjct: 214 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS------------------VEAVDATDH 255

Query: 110 TILHLAVADKQIEI 123
           T   LA A+    I
Sbjct: 256 TARQLAQANNHHNI 269

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.7 bits (104), Expect = 8e-06
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 13/79 (16%)

Query: 15  HEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATDVDGRNAL 61
           +   V  ++ +K     K D    + + +A+Q+G                A D     A 
Sbjct: 199 NMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTAR 258

Query: 62  HLAAMEGHIDVLEELVRAK 80
            LA    H ++++   R +
Sbjct: 259 QLAQANNHHNIVDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 18/115 (15%), Positives = 34/115 (29%), Gaps = 10/115 (8%)

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
             R  LH  A     +  E+L+  +            E       +NA D +  T L LA
Sbjct: 32  HNRTVLHWIASNSSAEKSEDLIVHEAK----------ECIAAGADVNAMDCDENTPLMLA 81

Query: 116 VADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYW 170
           V  ++  +    +   +    +  +  +    A     F     +  S +     
Sbjct: 82  VLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI 136

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 17/71 (23%)

Query: 60  ALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADK 119
            LH A ME     ++EL+ +KP                  LL   D +G   LH +V+ +
Sbjct: 3   PLHQACMENEFFKVQELLHSKPS-----------------LLLQKDQDGRIPLHWSVSFQ 45

Query: 120 QIEIWITHITY 130
             EI    ++ 
Sbjct: 46  AHEITSFLLSK 56

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 3e-06
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 14/75 (18%)

Query: 56  DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
           DG + LHLA +     +  E++R      +               LN  ++   T LHLA
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLA--------------FLNFQNNLQQTPLHLA 46

Query: 116 VADKQIEIWITHITY 130
           V   Q EI    +  
Sbjct: 47  VITNQPEIAEALLGA 61

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 8e-04
 Identities = 10/86 (11%), Positives = 27/86 (31%), Gaps = 13/86 (15%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVD 56
           A++ G+   V  ++    ++  +      +ALH+A                   +     
Sbjct: 118 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 177

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPD 82
           G +   L        + ++L +   +
Sbjct: 178 GYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 3e-06
 Identities = 29/208 (13%), Positives = 51/208 (24%), Gaps = 51/208 (24%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKC------------------- 50
            A  G  + + E +     LA ++D    +ALH A   G                     
Sbjct: 10  LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 69

Query: 51  ---------------------------SATDVDGRNALHLAAMEGHIDVLEELVR--AKP 81
                                      +A + +G   LH AA +   ++   L+   A P
Sbjct: 70  GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 129

Query: 82  DAASAPLKSFLETREGSELLNANDDNGMTILHLAVADK--QIEIWITHITYKSRAIKFFT 139
           DA      + +        L              + D      + +     +    K   
Sbjct: 130 DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV 189

Query: 140 TSTAIEVNAVNANGFTAWDILAQSKRDI 167
           +  A  +   N    T   +       I
Sbjct: 190 SQGA-SIYIENKEEKTPLQVAKGGLGLI 216

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 46.0 bits (108), Expect = 4e-06
 Identities = 21/91 (23%), Positives = 27/91 (29%), Gaps = 16/91 (17%)

Query: 8   VAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDV------------ 55
           V   L  +    N    Q    A K   +      +A+  G  SA D             
Sbjct: 61  VRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK 120

Query: 56  ----DGRNALHLAAMEGHIDVLEELVRAKPD 82
               +   A  LAA  GH+ VL  L    P 
Sbjct: 121 VIQAENYQAFRLAAENGHLHVLNRLCELAPT 151

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 28/233 (12%), Positives = 58/233 (24%), Gaps = 28/233 (12%)

Query: 10  AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGH 69
                 E    ++LC       ++  +  S  H            +       +AA+ G 
Sbjct: 53  PGTKNMEQVR-QLLCLYYAHYNRNAKQLWSDAHKK---------GIKSEVICFVAAITGC 102

Query: 70  IDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI---WIT 126
              L+ L                      E++            LA  +  + +      
Sbjct: 103 SSALDTL---------------CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE 147

Query: 127 HITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAKD 186
               +  A+       A  + A N +      +   +  +       E     R  +   
Sbjct: 148 LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR 207

Query: 187 MHLPANELAVTQTNSLTSHENNQKHEGKKDLKGTPWNLDDWLKEKRNAAMIVA 239
            H       +     L   E ++   G+K +        + LKE  +A  +  
Sbjct: 208 GHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSN 260

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 23/117 (19%), Positives = 32/117 (27%), Gaps = 31/117 (26%)

Query: 15  HEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS-------------ATDVDGRNAL 61
                 + L        +      +ALH+A+ KG                  D DG   L
Sbjct: 177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPL 236

Query: 62  HLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVAD 118
           H AA  G  +    LV    D                  + A +  G T   +A  D
Sbjct: 237 HAAAHWGKEEACRILVENLCD------------------MEAVNKVGQTAFDVADED 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 20/103 (19%)

Query: 28  ELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAP 87
           +L R   S     L     K K +    D       A   G  + +  L+    D     
Sbjct: 13  QLKRWIGSET--DLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD----- 65

Query: 88  LKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITY 130
                        +N  + +G+T LH A  D  +++    +  
Sbjct: 66  -------------INYANVDGLTALHQACIDDNVDMVKFLVEN 95

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 30/126 (23%)

Query: 42  HIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELL 101
            + S           G  ALH+AA +G+ +VL+ L++A+ D                  +
Sbjct: 184 WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD------------------V 225

Query: 102 NANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILA 161
           N  D +G T LH A    + E             +    +   ++ AVN  G TA+D+  
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEA-----------CRILVENLC-DMEAVNKVGQTAFDVAD 273

Query: 162 QSKRDI 167
           +     
Sbjct: 274 EDILGY 279

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 13/121 (10%), Positives = 30/121 (24%), Gaps = 26/121 (21%)

Query: 52  ATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTI 111
             D  G   LH      ++++++ LV+   +                      D+ G + 
Sbjct: 102 PVDEHGNTPLHWLTSIANLELVKHLVKHGSN------------------RLYGDNMGESC 143

Query: 112 LHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWE 171
           L  A          +   Y S   +         +   ++   T    +  +        
Sbjct: 144 LVKA--------VKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSA 195

Query: 172 I 172
            
Sbjct: 196 A 196

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 19/124 (15%), Positives = 41/124 (33%), Gaps = 34/124 (27%)

Query: 9   AAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCS----------------A 52
           AAA    +  +  I+ ++    +   + K S  +  + + K S                A
Sbjct: 195 AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA 254

Query: 53  TDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTIL 112
            D +G   L++AA  G+I +++ L+    D                      + +G+  +
Sbjct: 255 QDSNGDTCLNIAARLGNISIVDALLDYGAD------------------PFIANKSGLRPV 296

Query: 113 HLAV 116
               
Sbjct: 297 DFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 26/169 (15%), Positives = 44/169 (26%), Gaps = 23/169 (13%)

Query: 1   MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIA----SQKGKCSATDVD 56
            + L  AV +           +L          DS   + LH         G  +A    
Sbjct: 141 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY 200

Query: 57  GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREG-------SELLNANDDNGM 109
               +     + +  +       +        +      E        + +LNA D NG 
Sbjct: 201 LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD 260

Query: 110 TILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWD 158
           T L++A     I I           +       A +    N +G    D
Sbjct: 261 TCLNIAARLGNISI-----------VDALLDYGA-DPFIANKSGLRPVD 297

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 59 NALHLAAMEGHIDVLEELVRAKPD 82
          N L  AA  G ++ L  L++   +
Sbjct: 3  NELASAAARGDLEQLTSLLQNNVN 26

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 6/28 (21%), Positives = 11/28 (39%)

Query: 50  CSATDVDGRNALHLAAMEGHIDVLEELV 77
               +  G  A  LA + G  +V+  + 
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLMQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 8/36 (22%), Positives = 13/36 (36%)

Query: 42  HIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELV 77
              + +      D  G   L LA   G  D+++ L 
Sbjct: 118 SFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	383
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.95
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.94
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.92
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.91
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.91
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.9
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.9
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.88
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.87
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.87
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.87
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.85
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.81
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.8
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.78
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.77
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.75
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.73
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.73
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.72
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.72
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.71
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.64

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.1e-28  Score=217.00  Aligned_cols=161  Identities=23%  Similarity=0.248  Sum_probs=108.1

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCc--ccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPE--LARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAA   65 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~--~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~   65 (383)
                      +||||+|+.   .|+.+++++|++.+++  ..+..|.+|.||||+|+..|+             ++.+|.+|.||||+|+
T Consensus        10 ~t~Lh~A~~---~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~   86 (255)
T d1oy3d_          10 DTALHLAVI---HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLAC   86 (255)
T ss_dssp             CCHHHHHHH---TTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHT
T ss_pred             CCHHHHHHH---cCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhh
Confidence            366666633   6666666666666543  234556666666666666666             3445555666666666


Q ss_pred             HcCCHHHHHHHHHcCCCCCch-----------------------------------------------------------
Q 038344           66 MEGHIDVLEELVRAKPDAASA-----------------------------------------------------------   86 (383)
Q Consensus        66 ~~g~~~iv~~Ll~~~~~~~~~-----------------------------------------------------------   86 (383)
                      ..|+.+++++|++.+......                                                           
T Consensus        87 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~  166 (255)
T d1oy3d_          87 RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAV  166 (255)
T ss_dssp             TTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHH
T ss_pred             ccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccc
Confidence            666666665555433221100                                                           


Q ss_pred             ------HHHHHhhccCCccccc-CCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHH
Q 038344           87 ------PLKSFLETREGSELLN-ANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI  159 (383)
Q Consensus        87 ------~l~~l~~~~~~~~~~n-~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~  159 (383)
                            .+++|++   .+...+ .++..|.||||+|+..|+.++           +++|++. |+|++.+|++|+||||+
T Consensus       167 ~~~~~~~v~~Ll~---~~~~~~~~~~~~g~TpL~~A~~~~~~~~-----------v~~Ll~~-gadin~~d~~g~t~L~~  231 (255)
T d1oy3d_         167 IHKDAEMVRLLRD---AGADLNKPEPTCGRTPLHLAVEAQAASV-----------LELLLKA-GADPTARMYGGRTPLGS  231 (255)
T ss_dssp             HTTCHHHHHHHHH---HTCCTTCCCTTTCCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTTCCCTTSCCHHHH
T ss_pred             cccccccccchhc---ccccccccccccccccccccccccHHHH-----------HHHHHHC-CCCCCCCCCCCCCHHHH
Confidence                  1122222   111233 456788899999999999888           9999985 99999999999999999


Q ss_pred             HHhccCCcchhhHHHHHHHhcCCC
Q 038344          160 LAQSKRDIKYWEIGELLRRARGNS  183 (383)
Q Consensus       160 A~~~~~~~~~~~i~~~L~~~ga~~  183 (383)
                      |+.    .++.+++++|+++||+.
T Consensus       232 A~~----~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         232 ALL----RPNPILARLLRAHGAPE  251 (255)
T ss_dssp             HHT----SSCHHHHHHHHHTTCCC
T ss_pred             HHH----CCCHHHHHHHHHcCCCC
Confidence            999    88899999999999974

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.8e-27  Score=208.55  Aligned_cols=164  Identities=18%  Similarity=0.133  Sum_probs=133.5

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC----------------ccccCCCCCcHHHHHH
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK----------------CSATDVDGRNALHLAA   65 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~----------------~~~~d~~G~tpLh~A~   65 (383)
                      ||||+||.   .|+.+.++.|++.++...+.+|.+|+||||+|+..|+                ....|..|.+|+|+++
T Consensus         2 ~pLh~A~~---~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~   78 (229)
T d1ixva_           2 YPLHQACM---ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   78 (229)
T ss_dssp             CHHHHHHH---HTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             HhHHHHHH---cCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccc
Confidence            89999954   9999999999999888889999999999999999998                2345677889999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCch--------------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHH
Q 038344           66 MEGHIDVLEELVRAKPDAASA--------------------PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWI  125 (383)
Q Consensus        66 ~~g~~~iv~~Ll~~~~~~~~~--------------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~  125 (383)
                      ..+..++++.++..+.+....                    .++.+++   .+...+.+|.+|+||||+|+..|+.++  
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~---~~~~~~~~~~~g~t~l~~a~~~~~~~~--  153 (229)
T d1ixva_          79 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE---NGASVRIKDKFNQIPLHRAASVGSLKL--  153 (229)
T ss_dssp             HHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH---TTCCSCCCCTTSCCHHHHHHHHTCHHH--
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhhhhhh---hcccccccCCCCCCccchhhhcccccc--
Confidence            999989888888776543321                    5677776   455567788888888888888888888  


Q ss_pred             HhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHH-hcCCCCCC
Q 038344          126 THITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRR-ARGNSAKD  186 (383)
Q Consensus       126 ~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~-~ga~~~~~  186 (383)
                               +++|++..+.++|.+|.+|+||||+|+.    .++.+++++|++ .|+++...
T Consensus       154 ---------~~~Ll~~~~~~in~~d~~g~TpLh~A~~----~~~~~~v~~Ll~~~gad~~~~  202 (229)
T d1ixva_         154 ---------IELLCGLGKSAVNWQDKQGWTPLFHALA----EGHGDAAVLLVEKYGAEYDLV  202 (229)
T ss_dssp             ---------HHHHHTTTCCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHCCCSCCC
T ss_pred             ---------cccccccccccccccccccCCchhhhcc----cccHHHHHHHHHhcCCCCCCc
Confidence                     8888886447788888888888888888    778888888885 58877543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-26  Score=210.04  Aligned_cols=163  Identities=25%  Similarity=0.311  Sum_probs=140.7

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC--------------------------------
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------------------------   49 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~--------------------------------   49 (383)
                      |+||.|++   .|+.++|++|+++|+++....+..|+||||+|+..|+                                
T Consensus         7 ~~L~~Ai~---~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           7 HLLIKAVQ---NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHH---TTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             HHHHHHHH---cCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            78999955   9999999999999999854556789999999999997                                


Q ss_pred             ---------------------------------------------------------ccccCCCCCcHHHHHHHcCCHHH
Q 038344           50 ---------------------------------------------------------CSATDVDGRNALHLAAMEGHIDV   72 (383)
Q Consensus        50 ---------------------------------------------------------~~~~d~~G~tpLh~A~~~g~~~i   72 (383)
                                                                               ....+..|.||||+|+++|+.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence                                                                     12345678999999999999999


Q ss_pred             HHHHHHc-CCCCCch----------------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhh
Q 038344           73 LEELVRA-KPDAASA----------------------PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHIT  129 (383)
Q Consensus        73 v~~Ll~~-~~~~~~~----------------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~  129 (383)
                      +++|+++ |.+....                      .+++|++   .++++|.+|.+|.||||.|+..|+.++      
T Consensus       164 ~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~---~ga~~n~~~~~g~t~L~~a~~~~~~~~------  234 (285)
T d1wdya_         164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD---HGADVNVRGERGKTPLILAVEKKHLGL------  234 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH---TTCCSSCCCTTSCCHHHHHHHTTCHHH------
T ss_pred             HHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHH---CCCCCCccCCCCCCccchhhhcCcHHH------
Confidence            9999975 4444221                      3455555   677899999999999999999999999      


Q ss_pred             chhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          130 YKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       130 ~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                           +++|++..|+|+|.+|.+|.||||+|++    .++.|++++|+++||+++.
T Consensus       235 -----v~~lL~~~g~din~~d~~G~TpL~~A~~----~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         235 -----VQRLLEQEHIEINDTDSDGKTALLLAVE----LKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             -----HHHHHHSSSCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHSSCSCC
T ss_pred             -----HHHHHHcCCCCCcCCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCc
Confidence                 9999987799999999999999999999    8899999999999999853

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.8e-26  Score=197.86  Aligned_cols=147  Identities=21%  Similarity=0.258  Sum_probs=122.1

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC--------------------------------
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK--------------------------------   49 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~--------------------------------   49 (383)
                      |+|+.+   |..|+.+.++.+++.++...+.+|.+|+||||+|+..|+                                
T Consensus         5 ~~~~~~---a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   81 (223)
T d1uoha_           5 LMVCNL---AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG   81 (223)
T ss_dssp             SHHHHH---HHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHT
T ss_pred             HHHHHH---HHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccccccccccccccc
Confidence            445555   669999999999999888889999999999999999998                                


Q ss_pred             --------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHH
Q 038344           50 --------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA  115 (383)
Q Consensus        50 --------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A  115 (383)
                                    ++.+|.+|.||||+|+.+|+.+++++|+++|.+                  ++.+|.+|.||||+|
T Consensus        82 ~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d------------------~~~~~~~~~t~L~~a  143 (223)
T d1uoha_          82 RDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN------------------PDAKDHYEATAMHRA  143 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------------------TTCCCTTSCCHHHHH
T ss_pred             ccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCC------------------CCCcCCCCCccchhh
Confidence                          345566667777777777777777777766655                  788888999999999


Q ss_pred             HHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCCC
Q 038344          116 VADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSAK  185 (383)
Q Consensus       116 ~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~~  185 (383)
                      +..++.++           +++|++. +.+++..|.+|+||||+|+.    .++.+++++|+++|+++..
T Consensus       144 ~~~~~~~~-----------~~~L~~~-~~~i~~~d~~g~TpL~~Aa~----~g~~~~v~~LL~~Gad~~~  197 (223)
T d1uoha_         144 AAKGNLKM-----------IHILLYY-KASTNIQDTEGNTPLHLACD----EERVEEAKLLVSQGASIYI  197 (223)
T ss_dssp             HHTTCHHH-----------HHHHHHT-TCCSCCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCSCC
T ss_pred             hhcCCcch-----------hhhhccc-cceeeeccCCCCceeccccc----cCcHHHHHHHHHCCCCCCC
Confidence            99998888           8888885 99999999999999999999    7888999999999998743

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.7e-25  Score=209.21  Aligned_cols=45  Identities=27%  Similarity=0.486  Sum_probs=37.3

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK   49 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~   49 (383)
                      +||||+|   |..|+.++|++|+++|+++ +..|..|+||||+|+..|+
T Consensus         1 ~TpL~~A---a~~g~~~~v~~Ll~~g~~i-n~~d~~g~TpL~~A~~~g~   45 (408)
T d1n11a_           1 LTPLHVA---SFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGH   45 (408)
T ss_dssp             CCHHHHH---HHHTCHHHHHHHHHTTCCS-CCSSSCCCCHHHHHHHHTC
T ss_pred             CChHHHH---HHCcCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCC
Confidence            5888888   4488888888888888877 7778888888888888887

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2.9e-25  Score=197.53  Aligned_cols=137  Identities=26%  Similarity=0.312  Sum_probs=114.9

Q ss_pred             cCCCCCCcHHHHHHHcCC----------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCch---------
Q 038344           32 KSDSRKSSALHIASQKGK----------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA---------   86 (383)
Q Consensus        32 ~~d~~g~TpLh~Aa~~g~----------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~---------   86 (383)
                      ..|++|.||||+||..|+                ++.+|.+|+||||+|+..|+.+++++|+++|++....         
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~   83 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH   83 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhh
Confidence            458899999999999999                4567889999999999999999999999999876432         


Q ss_pred             ---------HHHHHhhcc--------------------------------------------CCcccccCCCCCCCcHHH
Q 038344           87 ---------PLKSFLETR--------------------------------------------EGSELLNANDDNGMTILH  113 (383)
Q Consensus        87 ---------~l~~l~~~~--------------------------------------------~~~~~~n~~d~~g~TpLh  113 (383)
                               .++.+++..                                            ..+..++.+|.+|.||||
T Consensus        84 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh  163 (255)
T d1oy3d_          84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (255)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             hhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccc
Confidence                     344443211                                            123355778999999999


Q ss_pred             HHHHcCChhHHHHhhhchhhHHHHhhhcccccccc-cccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          114 LAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNA-VNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       114 ~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~-~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      +|+..++.++           +++|++. +.+.+. .+..|.||||+|+.    .++.+++++|+++|+++.
T Consensus       164 ~A~~~~~~~~-----------v~~Ll~~-~~~~~~~~~~~g~TpL~~A~~----~~~~~~v~~Ll~~gadin  219 (255)
T d1oy3d_         164 VAVIHKDAEM-----------VRLLRDA-GADLNKPEPTCGRTPLHLAVE----AQAASVLELLLKAGADPT  219 (255)
T ss_dssp             HHHHTTCHHH-----------HHHHHHH-TCCTTCCCTTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             cccccccccc-----------ccchhcc-ccccccccccccccccccccc----ccHHHHHHHHHHCCCCCC
Confidence            9999999999           9999996 777775 46789999999999    888999999999999984

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.3e-25  Score=191.99  Aligned_cols=132  Identities=23%  Similarity=0.296  Sum_probs=117.7

Q ss_pred             HHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 038344           11 ALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEGHIDVLEELV   77 (383)
Q Consensus        11 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll   77 (383)
                      +..|+.++++.|+++++++ +..|.+|.||||+|+..|+             ++.+|.+|.||||+|+..|+.+++++|+
T Consensus        78 ~~~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~  156 (223)
T d1uoha_          78 ASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL  156 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccccccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhc
Confidence            3455666777777777776 7889999999999999998             6678899999999999999999999999


Q ss_pred             HcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHH
Q 038344           78 RAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAW  157 (383)
Q Consensus        78 ~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL  157 (383)
                      +.+.+                  +|.+|.+|+||||+|+..|+.++           +++|++. |+|++.+|.+|+|||
T Consensus       157 ~~~~~------------------i~~~d~~g~TpL~~Aa~~g~~~~-----------v~~LL~~-Gad~~~~d~~g~tpl  206 (223)
T d1uoha_         157 YYKAS------------------TNIQDTEGNTPLHLACDEERVEE-----------AKLLVSQ-GASIYIENKEEKTPL  206 (223)
T ss_dssp             HTTCC------------------SCCCCTTCCCHHHHHHHTTCHHH-----------HHHHHHT-TCCSCCCCTTSCCHH
T ss_pred             cccce------------------eeeccCCCCceeccccccCcHHH-----------HHHHHHC-CCCCCCCCCCCCCHH
Confidence            98887                  89999999999999999999999           9999996 999999999999999


Q ss_pred             HHHHhccCCcchhhHHHHHHH
Q 038344          158 DILAQSKRDIKYWEIGELLRR  178 (383)
Q Consensus       158 ~~A~~~~~~~~~~~i~~~L~~  178 (383)
                      |+|.     .++.++++.|++
T Consensus       207 ~~A~-----~~~~~i~~~Ll~  222 (223)
T d1uoha_         207 QVAK-----GGLGLILKRMVE  222 (223)
T ss_dssp             HHCC-----TTHHHHHHHHHC
T ss_pred             HHHH-----CCCHHHHhcccC
Confidence            9983     477789998875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.1e-24  Score=178.65  Aligned_cols=136  Identities=30%  Similarity=0.387  Sum_probs=124.7

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEG   68 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g   68 (383)
                      ||||.|   ++.|+.++++.||++|++. + .|..|+||||+|+..++             ....+..+.++++.++...
T Consensus         4 t~L~~A---a~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           4 KKLLEA---ARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHH---HHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             HHHHHH---HHCCCHHHHHHHHHcCCCc-c-cccCCCccccccccccccccccccccccccccccccccccccccccccc
Confidence            799998   4599999999999999976 4 69999999999999998             3345667889999999999


Q ss_pred             CHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccc
Q 038344           69 HIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNA  148 (383)
Q Consensus        69 ~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~  148 (383)
                      +.++++++++++.+                  .+.+|.+|+||||+|+..|+.++           +++|++. |+|++.
T Consensus        79 ~~~~~~~l~~~~~~------------------~~~~~~~g~T~L~~A~~~g~~~i-----------v~~ll~~-gad~~~  128 (153)
T d1awcb_          79 HANIVEVLLKHGAD------------------VNAKDMLKMTALHWATEHNHQEV-----------VELLIKY-GADVHT  128 (153)
T ss_dssp             CHHHHHHHHTTTCC------------------TTCCCTTSCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTTC
T ss_pred             cceeeecccccCCc------------------cccccccCchHHHhhhhcchhhe-----------eeecccc-ccCCcc
Confidence            99999999998887                  78899999999999999999999           9999996 999999


Q ss_pred             cccCCCCHHHHHHhccCCcchhhHHHHH
Q 038344          149 VNANGFTAWDILAQSKRDIKYWEIGELL  176 (383)
Q Consensus       149 ~n~~G~TpL~~A~~~~~~~~~~~i~~~L  176 (383)
                      .|.+|.||||+|+.    .++.|++++|
T Consensus       129 ~d~~g~Tpl~~A~~----~g~~eiv~lL  152 (153)
T d1awcb_         129 QSKFCKTAFDISID----NGNEDLAEIL  152 (153)
T ss_dssp             CCTTSCCHHHHHHH----TTCHHHHHHH
T ss_pred             cCCCCCCHHHHHHH----cCCHHHHHhC
Confidence            99999999999999    8899999887

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.6e-25  Score=180.18  Aligned_cols=141  Identities=25%  Similarity=0.336  Sum_probs=130.3

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEG   68 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g   68 (383)
                      +|||+|+   ..|+.++|+.|+++|+++ +.+|.+|.||||+|+ .|+             ++..+.+|.+|++.++..+
T Consensus         3 ~~Lh~Aa---~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_           3 NELASAA---ARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             HHHHHHH---HHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHH---HcCCHHHHHHHHHCCCCc-CccCCcccccccccc-cccccccccccccccccccccccCccccccccccc
Confidence            5899994   599999999999999998 889999999999886 566             5678889999999999999


Q ss_pred             CHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccc
Q 038344           69 HIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNA  148 (383)
Q Consensus        69 ~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~  148 (383)
                      +.+.++.+++.+.+                  ++..|..|.+|||+|+..++.++           +++|+++.+.+.+.
T Consensus        78 ~~~~~~~l~~~~~~------------------~~~~~~~~~~~l~~a~~~~~~~~-----------~~~Ll~~~~~~~~~  128 (156)
T d1ihba_          78 FLDTLQTLLEFQAD------------------VNIEDNEGNLPLHLAAKEGHLRV-----------VEFLVKHTASNVGH  128 (156)
T ss_dssp             CHHHHHHHHHTTCC------------------TTCCCTTSCCHHHHHHHTTCHHH-----------HHHHHHHSCCCTTC
T ss_pred             cccccccccccccc------------------ccccccccccccccccccccccc-----------cccccccccccccc
Confidence            99999999998887                  88999999999999999999999           99999985568999


Q ss_pred             cccCCCCHHHHHHhccCCcchhhHHHHHHHhc
Q 038344          149 VNANGFTAWDILAQSKRDIKYWEIGELLRRAR  180 (383)
Q Consensus       149 ~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~g  180 (383)
                      +|.+|+||||+|+.    .++.+++++|+++|
T Consensus       129 ~d~~g~TpL~~A~~----~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         129 RNHKGDTACDLARL----YGRNEVVSLMQANG  156 (156)
T ss_dssp             CCTTSCCHHHHHHH----TTCHHHHHHHHHTC
T ss_pred             cCCCCCCHHHHHHH----cCCHHHHHHHHhcC
Confidence            99999999999999    88999999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-24  Score=178.89  Aligned_cols=138  Identities=24%  Similarity=0.333  Sum_probs=124.7

Q ss_pred             hHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcCC
Q 038344            3 ILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEGH   69 (383)
Q Consensus         3 pLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g~   69 (383)
                      .||.|   |..|+.++|++|+++++...+..|..|+||||+|+. |+             ++..+.+|.+|++.++..++
T Consensus         5 ~L~~A---a~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           5 RLSGA---AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHH---HHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHH---HHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            57777   559999999999998654458999999999999875 44             66778899999999999999


Q ss_pred             HHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccccc
Q 038344           70 IDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAV  149 (383)
Q Consensus        70 ~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~  149 (383)
                      .++++.+++++++                  +|.+|.+|+||||+|+..|+.++           +++|+.  |++++.+
T Consensus        81 ~~~~~~~l~~~~~------------------~n~~~~~~~t~L~~A~~~~~~~i-----------~~~L~~--~~~~~~~  129 (156)
T d1bd8a_          81 LDTLKVLVEHGAD------------------VNVPDGTGALPIHLAVQEGHTAV-----------VSFLAA--ESDLHRR  129 (156)
T ss_dssp             HHHHHHHHHTTCC------------------SCCCCTTSCCHHHHHHHHTCHHH-----------HHHHHT--TSCTTCC
T ss_pred             ccccccccccccc------------------cccccCCCCeeeccccccccccc-----------cccccc--ccccccc
Confidence            9999999999887                  88999999999999999999999           998874  8999999


Q ss_pred             ccCCCCHHHHHHhccCCcchhhHHHHHHHh
Q 038344          150 NANGFTAWDILAQSKRDIKYWEIGELLRRA  179 (383)
Q Consensus       150 n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~  179 (383)
                      |.+|+||||+|+.    .++.+++++|++|
T Consensus       130 d~~G~TpL~~A~~----~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         130 DARGLTPLELALQ----RGAQDLVDILQGH  155 (156)
T ss_dssp             CTTSCCHHHHHHH----SCCHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHH----cCCHHHHHHHHhh
Confidence            9999999999999    8999999999875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=6e-24  Score=183.12  Aligned_cols=138  Identities=23%  Similarity=0.256  Sum_probs=128.7

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------------------------
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------------------------   49 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------------------------   49 (383)
                      +||||+||.   .|+.++++.|++.++++ +.+|..+.++++.++..++                               
T Consensus        24 ~t~L~~A~~---~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (209)
T d1ot8a_          24 ETSLHLAAR---FARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAAR   99 (209)
T ss_dssp             CCHHHHHHH---TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCHHHHHHH---cCCHHHHHHHHhhcccc-cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            599999955   99999999999999998 8889999999999998887                               


Q ss_pred             ----------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHH
Q 038344           50 ----------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILH  113 (383)
Q Consensus        50 ----------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh  113 (383)
                                      ++.+|..|.||||.++.+|..++++.+++.+.+                  +|.+|.+|+||||
T Consensus       100 ~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~------------------~~~~d~~g~TpL~  161 (209)
T d1ot8a_         100 LAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN------------------RDAQDDKDETPLF  161 (209)
T ss_dssp             TTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC------------------TTCCCTTCCCHHH
T ss_pred             ccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccc------------------ccccccccccccc
Confidence                            456888999999999999999999999998877                  8899999999999


Q ss_pred             HHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHH
Q 038344          114 LAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELL  176 (383)
Q Consensus       114 ~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L  176 (383)
                      +|+..|+.++           +++|++. |+|++..|.+|+||||+|++    .++.+++++|
T Consensus       162 ~A~~~g~~~~-----------v~~Ll~~-gad~n~~d~~g~Tpl~~A~~----~~~~~iv~lL  208 (209)
T d1ot8a_         162 LAAREGSYEA-----------SKALLDN-FANREITDHMDRLPRDVASE----RLHHDIVRLL  208 (209)
T ss_dssp             HHHHTTCHHH-----------HHHHHHT-TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHH
T ss_pred             hhccccHHHH-----------HHHHHHC-CCCCCCcCCCCCCHHHHHHH----cCCHHHHhhc
Confidence            9999999999           9999996 99999999999999999999    8899999986

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.91  E-value=1.2e-23  Score=190.58  Aligned_cols=163  Identities=21%  Similarity=0.252  Sum_probs=137.8

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEG   68 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g   68 (383)
                      |||+.||.   .|+.++|++|+++|+++ +..|.+|+||||+|+..|+             ....+..+.+|||.|+..|
T Consensus        42 t~l~~A~~---~G~~~~v~~Ll~~Gadv-n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          42 AVFLAACS---SGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (291)
T ss_dssp             HHHHHHHH---HTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             hHHHHHHH---cCCHHHHHHHHHCCCCC-CccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccccc
Confidence            78999955   89999999999999997 8899999999999999999             3456778999999999999


Q ss_pred             CHHHHHHHHHcCCCCCch------------------HHHHHhhc------------------------cCCcccccCCCC
Q 038344           69 HIDVLEELVRAKPDAASA------------------PLKSFLET------------------------REGSELLNANDD  106 (383)
Q Consensus        69 ~~~iv~~Ll~~~~~~~~~------------------~l~~l~~~------------------------~~~~~~~n~~d~  106 (383)
                      +.++++.|++++......                  .+..++..                        ..........+.
T Consensus       118 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (291)
T d1s70b_         118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK  197 (291)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred             ccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccC
Confidence            999999999988654322                  11222110                        012233456788


Q ss_pred             CCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          107 NGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       107 ~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      +|.||||.|+..|+.++           ++.|++. |+|+|.+|.+|.||||+|+.    .++.+++++|+++|++++
T Consensus       198 ~g~t~L~~a~~~~~~~~-----------~~~Ll~~-g~din~~~~~g~TpL~~A~~----~g~~~iv~lLl~~Gadv~  259 (291)
T d1s70b_         198 SGGTALHVAAAKGYTEV-----------LKLLIQA-RYDVNIKDYDGWTPLHAAAH----WGKEEACRILVENLCDME  259 (291)
T ss_dssp             TCCCHHHHHHHHTCHHH-----------HHHHHTT-TCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             CCCChhhHHHHcCChhh-----------hcccccc-eecccccccCCCCHHHHHHH----cCCHHHHHHHHHCCCCCC
Confidence            99999999999999999           9999986 99999999999999999999    889999999999999984

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.4e-24  Score=186.14  Aligned_cols=160  Identities=19%  Similarity=0.264  Sum_probs=122.6

Q ss_pred             CChHHHHHHHHHcCCHHH----HHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHH
Q 038344            1 MTILQLAVAAALLGHEDF----VNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHL   63 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~----v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~   63 (383)
                      .||||+|+.   .|+.++    ++.+...+.++ +..|.+|+||||+|+..|+             ++.+|.+|.||||.
T Consensus         3 ~t~Lh~A~~---~g~~~~~~~li~~~~~~~~~i-n~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~   78 (221)
T d1iknd_           3 DSFLHLAII---HEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL   78 (221)
T ss_dssp             CCTTHHHHH---TTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHH
T ss_pred             ChHHHHHHH---cCCHHHHHHHHHHHHhCCCCc-ccCCCCCCcccccccccccccccccccccccccccccccccccccc
Confidence            489999854   888644    44555566666 8889999999999999988             56788899999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCch------------------------HHHHHhhccCCcccccCCC-CCCCcHHHHHHHc
Q 038344           64 AAMEGHIDVLEELVRAKPDAASA------------------------PLKSFLETREGSELLNAND-DNGMTILHLAVAD  118 (383)
Q Consensus        64 A~~~g~~~iv~~Ll~~~~~~~~~------------------------~l~~l~~~~~~~~~~n~~d-~~g~TpLh~A~~~  118 (383)
                      |+..|+.++++.|++.+.+....                        .++++.+   .+..++.++ .+|+||||+|+..
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~~G~T~L~~A~~~  155 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS---LGADVNAQEPCNGRTALHLAVDL  155 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH---HTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecc---cCcccccccccCCCCcccccccc
Confidence            99999999999999876553221                        2233333   344455544 5789999999999


Q ss_pred             CChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCC
Q 038344          119 KQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNS  183 (383)
Q Consensus       119 ~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~  183 (383)
                      |+.++           +++|++. |+|++.+|.+|+||||+|+.    .++.+++++|.+.+.+.
T Consensus       156 g~~~~-----------v~~Ll~~-gad~~~~~~~G~tpl~~A~~----~~~~~~~~~l~~~~~~~  204 (221)
T d1iknd_         156 QNPDL-----------VSLLLKC-GADVNRVTYQGYSPYQLTWG----RPSTRIQQQLGQLTLEN  204 (221)
T ss_dssp             TCHHH-----------HHHHHTT-TCCSCCCCTTCCCGGGGCTT----SSCHHHHHHHHTTSCGG
T ss_pred             ccHHH-----------HHHHHhc-CCcccccCCCCCCHHHHHHH----CCCHHHHHHHHHcCCcc
Confidence            99999           9999985 99999999999999999988    77888999998887654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.90  E-value=1.3e-23  Score=188.75  Aligned_cols=141  Identities=26%  Similarity=0.329  Sum_probs=126.4

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------------------------
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------------------------   49 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------------------------   49 (383)
                      +||||+|+.   .|+.+++++|+++|+++ +.+|.+|.||||+|+..++                               
T Consensus        75 ~TpLh~A~~---~g~~~iv~~Ll~~Gad~-n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  150 (277)
T d2fo1e1          75 NTPLMLAVL---ARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV  150 (277)
T ss_dssp             CCHHHHHHH---HTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHH
T ss_pred             Ceeeccccc---ccccccccccccccccc-ccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHH
Confidence            599999954   99999999999999997 8889999999999999987                               


Q ss_pred             -----------------------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCccc
Q 038344           50 -----------------------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSEL  100 (383)
Q Consensus        50 -----------------------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~  100 (383)
                                                   .+..+.+|+||||.++..++.+++++++.....                 .
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~-----------------~  213 (277)
T d2fo1e1         151 AHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS-----------------N  213 (277)
T ss_dssp             HHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC-----------------C
T ss_pred             HhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccc-----------------c
Confidence                                         234567789999999999999999887754332                 3


Q ss_pred             ccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHH
Q 038344          101 LNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRR  178 (383)
Q Consensus       101 ~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~  178 (383)
                      .+.+|..|+||||+|+..|+.++           +++|++. |+|+|.+|.+|+||||+|+.    .++.+++++|.+
T Consensus       214 ~~~~d~~g~tpL~~A~~~g~~~i-----------v~~Ll~~-gadin~~d~~G~T~L~~A~~----~~~~~iv~lL~~  275 (277)
T d2fo1e1         214 KDKQDEDGKTPIMLAAQEGRIEV-----------VMYLIQQ-GASVEAVDATDHTARQLAQA----NNHHNIVDIFDR  275 (277)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHH-----------HHHHHHT-TCCSSCCCSSSCCHHHHHHH----TTCHHHHHHHHT
T ss_pred             ccccCCCCCCHHHHHHHcCCHHH-----------HHHHHHC-cCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHH
Confidence            78899999999999999999999           9999996 99999999999999999999    889999999985

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=9.2e-24  Score=182.19  Aligned_cols=76  Identities=26%  Similarity=0.272  Sum_probs=61.9

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHh----cCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILC----QKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHL   63 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~----~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~   63 (383)
                      +||||+||.   .|+.++++.|++    .+.++ +..|.+|+||||+|+..|+             .+..+.+|.++++.
T Consensus         4 ~TpLh~A~~---~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           4 DTPLHIAVV---QGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL   79 (228)
T ss_dssp             CCHHHHHHH---TTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccHHHHHHH---cCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhccccccccccccccccccccccccccccccc
Confidence            599999954   999999999885    56676 8899999999999999998             44566677788888


Q ss_pred             HHHcCCHHHHHHHHHcC
Q 038344           64 AAMEGHIDVLEELVRAK   80 (383)
Q Consensus        64 A~~~g~~~iv~~Ll~~~   80 (383)
                      |...++.++++.+....
T Consensus        80 a~~~~~~~~~~~~~~~~   96 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSA   96 (228)
T ss_dssp             HHHTTCHHHHHHHHHHS
T ss_pred             ccccccccchhhhhhcc
Confidence            88888877777766543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.89  E-value=1.9e-23  Score=187.53  Aligned_cols=165  Identities=19%  Similarity=0.238  Sum_probs=131.5

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC---------------------ccccCCCCCc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK---------------------CSATDVDGRN   59 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~---------------------~~~~d~~G~t   59 (383)
                      .||||++++|  .|+.++++.|.+.+.+..+  +.+|+||||+||..|+                     ++.+|.+|+|
T Consensus         1 ~~p~~~~~~~--~~~~~~~~~l~~~~~n~~~--~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~T   76 (277)
T d2fo1e1           1 ESPIKLHTEA--AGSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT   76 (277)
T ss_dssp             CCCCHHHHHH--HSSSCCCSCCSTTTTTTCC--CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCC
T ss_pred             CChHHHHHHh--CCCHHHHHHHHhcCCCcCC--CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCe
Confidence            5899999875  5888888888888776522  2459999999999998                     3568899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCch------H----------------------------------------------
Q 038344           60 ALHLAAMEGHIDVLEELVRAKPDAASA------P----------------------------------------------   87 (383)
Q Consensus        60 pLh~A~~~g~~~iv~~Ll~~~~~~~~~------~----------------------------------------------   87 (383)
                      |||+|+++|+.+++++|+++|++....      +                                              
T Consensus        77 pLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (277)
T d2fo1e1          77 PLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGR  156 (277)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCST
T ss_pred             eeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccc
Confidence            999999999999999999998876432      0                                              


Q ss_pred             -----HHHHhhcc-----CCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHH
Q 038344           88 -----LKSFLETR-----EGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAW  157 (383)
Q Consensus        88 -----l~~l~~~~-----~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL  157 (383)
                           +..+.+..     ......+..+.+|.||||+++..++.+.           +++++...+.+.+.+|..|.|||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~-----------~~~~l~~~~~~~~~~d~~g~tpL  225 (277)
T d2fo1e1         157 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI-----------VKYLVGEKGSNKDKQDEDGKTPI  225 (277)
T ss_dssp             THHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHH-----------HHHHHHHSCCCTTCCCTTCCCHH
T ss_pred             cccccccccccccccccccccccccccccCCCCccccccccccccc-----------cccccccccccccccCCCCCCHH
Confidence                 00111100     1222345677889999999999999999           88777667999999999999999


Q ss_pred             HHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          158 DILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       158 ~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      |+|+.    .++.+++++|+++|++++
T Consensus       226 ~~A~~----~g~~~iv~~Ll~~gadin  248 (277)
T d2fo1e1         226 MLAAQ----EGRIEVVMYLIQQGASVE  248 (277)
T ss_dssp             HHHHH----HTCHHHHHHHHHTTCCSS
T ss_pred             HHHHH----cCCHHHHHHHHHCcCCCC
Confidence            99999    888999999999999974

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.8e-22  Score=165.59  Aligned_cols=133  Identities=21%  Similarity=0.227  Sum_probs=117.0

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHc---CCHHHHHHHHH
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAME---GHIDVLEELVR   78 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~---g~~~iv~~Ll~   78 (383)
                      ++||..++|++.++...+..++..|.++.....               ....+..|+||||+|++.   |+.+++++|++
T Consensus         5 ~~l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~---------------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~   69 (154)
T d1dcqa1           5 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIP---------------LANGHEPDETALHLAVRSVDRTSLHIVDFLVQ   69 (154)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCC---------------CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHcCCCcCCCCC---------------cccCCCCCCchHHHHHHhcCCCCHHHHHHHHH
Confidence            579999999999999999999999887632211               123466789999999974   67899999999


Q ss_pred             cCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHH
Q 038344           79 AKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWD  158 (383)
Q Consensus        79 ~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~  158 (383)
                      +|++                  +|.+|.+|+||||+|+..|+.++           +++|++. |+|++.+|.+|+||||
T Consensus        70 ~gad------------------in~~d~~g~TpLh~A~~~~~~~~-----------v~~Ll~~-gad~~~~d~~g~tpL~  119 (154)
T d1dcqa1          70 NSGN------------------LDKQTGKGSTALHYCCLTDNAEC-----------LKLLLRG-KASIEIANESGETPLD  119 (154)
T ss_dssp             HCSC------------------TTCCCTTCCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTTCCCTTSCCHHH
T ss_pred             cCCC------------------hhhhhhhhccccccccccccccc-----------ccccccc-CccccccCCCCCCHHH
Confidence            9888                  89999999999999999999999           9999996 9999999999999999


Q ss_pred             HHHhccCCcchhhHHHHHHHhcCCC
Q 038344          159 ILAQSKRDIKYWEIGELLRRARGNS  183 (383)
Q Consensus       159 ~A~~~~~~~~~~~i~~~L~~~ga~~  183 (383)
                      +|+.    .++.+++++|+++++..
T Consensus       120 ~A~~----~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1         120 IAKR----LKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHH----TTCHHHHHHHHHHHTTC
T ss_pred             HHHH----cCCHHHHHHHHHhCCCC
Confidence            9999    88999999999998765

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.1e-23  Score=190.62  Aligned_cols=145  Identities=19%  Similarity=0.171  Sum_probs=111.2

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-----------------ccccCCCCCcHHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-----------------CSATDVDGRNALHL   63 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-----------------~~~~d~~G~tpLh~   63 (383)
                      +||||+|+   ..|+.++|+.|+++|+++ +.+|..|+||||.||..++                 ...+|..|+||||.
T Consensus       108 ~T~LH~Aa---~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~  183 (301)
T d1sw6a_         108 NTPLHWLT---SIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH  183 (301)
T ss_dssp             CCHHHHHH---HTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHH
T ss_pred             CCHHHHHH---HcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHH
Confidence            59999995   599999999999999998 7889999999999998764                 45678899999999


Q ss_pred             HHHcCC----HH--------HHHHHHHcCCCCCch-------------------HHHHHhhccCCcccccCCCCCCCcHH
Q 038344           64 AAMEGH----ID--------VLEELVRAKPDAASA-------------------PLKSFLETREGSELLNANDDNGMTIL  112 (383)
Q Consensus        64 A~~~g~----~~--------iv~~Ll~~~~~~~~~-------------------~l~~l~~~~~~~~~~n~~d~~g~TpL  112 (383)
                      ++..+.    .+        +++.+.+.+......                   ....+.........+|.+|.+|+|||
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpL  263 (301)
T d1sw6a_         184 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL  263 (301)
T ss_dssp             HHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHH
T ss_pred             HHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHH
Confidence            886543    22        333444443332111                   00000000011223799999999999


Q ss_pred             HHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHH
Q 038344          113 HLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILA  161 (383)
Q Consensus       113 h~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~  161 (383)
                      |+|++.|+.++           +++|++. |+|++..|++|.||||+|+
T Consensus       264 h~A~~~g~~~i-----------v~~Ll~~-GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         264 NIAARLGNISI-----------VDALLDY-GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHCCHHH-----------HHHHHHT-TCCTTCCCTTSCCGGGGTC
T ss_pred             HHHHHcCCHHH-----------HHHHHHC-CCCCCCCCCCCCCHHHHcC
Confidence            99999999999           9999996 9999999999999999985

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.1e-22  Score=162.19  Aligned_cols=126  Identities=27%  Similarity=0.348  Sum_probs=107.3

Q ss_pred             hHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 038344            3 ILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKPD   82 (383)
Q Consensus         3 pLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~   82 (383)
                      ||.+...|+..|+.++++.|+++|+++ +                    .+|.+|+||||+|+..|+.+++++|+++|++
T Consensus         1 pl~lL~~A~~~G~~~~v~~Ll~~g~d~-n--------------------~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~   59 (130)
T d1ycsb1           1 PLALLLDSSLEGEFDLVQRIIYEVDDP-S--------------------LPNDEGITALHNAVCAGHTEIVKFLVQFGVN   59 (130)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTSTTSSC-C--------------------CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHcCCCc-c--------------------ccccccccccccccccccccccccccccccc
Confidence            445555557799999999999999887 3                    4567788899999999999999999999887


Q ss_pred             CCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccccccccccc-CCCCHHHHHH
Q 038344           83 AASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNA-NGFTAWDILA  161 (383)
Q Consensus        83 ~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~-~G~TpL~~A~  161 (383)
                                        +|.+|.+|+||||+|+.+|+.++           +++|+++ |+|++..+. +|+||++++.
T Consensus        60 ------------------~~~~d~~g~tpLh~A~~~g~~~~-----------v~~Ll~~-ga~v~~~~~~~~~~~~~~~~  109 (130)
T d1ycsb1          60 ------------------VNAADSDGWTPLHCAASCNNVQV-----------CKFLVES-GAAVFAMTYSDMQTAADKCE  109 (130)
T ss_dssp             ------------------TTCCCTTCCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTTCCCSSSCCCHHHHCC
T ss_pred             ------------------cccccccCcccccccchhhHHHH-----------HHHHHHc-CCCcccccCCCCCCHHHHHH
Confidence                              89999999999999999999999           9999996 999998775 6899998865


Q ss_pred             hccCCcchhhHHHHHHHhcC
Q 038344          162 QSKRDIKYWEIGELLRRARG  181 (383)
Q Consensus       162 ~~~~~~~~~~i~~~L~~~ga  181 (383)
                      .  ...++.|++++|++.+.
T Consensus       110 a--~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1         110 E--MEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             S--SSTTCCCHHHHHHHHHH
T ss_pred             H--HHcChHHHHHHHHhHHH
Confidence            3  11567899999987653

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=8.3e-24  Score=165.91  Aligned_cols=107  Identities=25%  Similarity=0.346  Sum_probs=97.3

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKP   81 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~   81 (383)
                      |||++|+   +.|+.++++.|+++|+++ +                    .+|.+|+||||+|+..|+.+++++|+++|+
T Consensus         4 tpL~~A~---~~g~~~~v~~Ll~~g~d~-n--------------------~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~   59 (118)
T d1myoa_           4 KEFMWAL---KNGDLDEVKDYVAKGEDV-N--------------------RTLEGGRKPLHYAADCGQLEILEFLLLKGA   59 (118)
T ss_dssp             HHHHHHH---HTTCHHHHHHHHTTTCCC-C--------------------CCSSSSCCTTHHHHHHSTTTHHHHHHHSSC
T ss_pred             hHHHHHH---HCCCHHHHHHHHHhhhcc-c--------------------cccccccccccccccccccccccccccccc
Confidence            7999995   499999999999999887 3                    356678888899999999999999999988


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHH
Q 038344           82 DAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILA  161 (383)
Q Consensus        82 ~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~  161 (383)
                      +                  +|.+|.+|+||||+|+.+|+.++           +++|++. |+|++.+|++|+||||+|.
T Consensus        60 d------------------in~~d~~g~tpLh~A~~~~~~~~-----------v~~Ll~~-Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          60 D------------------INAPDKHHITPLLSAVYEGHVSC-----------VKLLLSK-GADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             T------------------TTCCSSSCSCHHHHHHTTTCCHH-----------HHHHHTT-CCCSSSSSSSTCCCCCTCS
T ss_pred             e------------------eeecccccccchhhhhhcCchhh-----------hhhhhcc-cccceeeCCCCCCHHHHHh
Confidence            8                  89999999999999999999999           9999996 9999999999999999874


Q ss_pred             h
Q 038344          162 Q  162 (383)
Q Consensus       162 ~  162 (383)
                      .
T Consensus       110 ~  110 (118)
T d1myoa_         110 N  110 (118)
T ss_dssp             S
T ss_pred             H
Confidence            3

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.2e-23  Score=162.54  Aligned_cols=118  Identities=18%  Similarity=0.223  Sum_probs=104.6

Q ss_pred             ChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 038344            2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKP   81 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~   81 (383)
                      ++||+|   +..|+.+++++|+++|+++ +.                    +|.+|.||+|.|+ .|+.+++++|+++|+
T Consensus         5 ~~L~~A---a~~G~~~~v~~Ll~~gad~-n~--------------------~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga   59 (125)
T d1bi7b_           5 DWLATA---AARGRVEEVRALLEAGANP-NA--------------------PNSYGRRPIQVMM-MGSARVAELLLLHGA   59 (125)
T ss_dssp             THHHHH---HHHTCHHHHHHHHTTTCCT-TC--------------------CCSSSCCTTTSSC-TTCHHHHHHHHTTTC
T ss_pred             hHHHHH---HHCCCHHHHHHHHHcCCcc-cc--------------------ccccccccccccc-ccccccccccccccc
Confidence            789999   5599999999999999887 33                    4667778887664 689999999999988


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCCC-cHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHH
Q 038344           82 DAASAPLKSFLETREGSELLNANDDNGM-TILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDIL  160 (383)
Q Consensus        82 ~~~~~~l~~l~~~~~~~~~~n~~d~~g~-TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A  160 (383)
                      +                  +|.+|..|. ||||+|++.|+.++           +++|++. |+|++.+|.+|+||||+|
T Consensus        60 ~------------------~~~~~~~~~~~~L~~A~~~g~~~~-----------v~~Ll~~-ga~~~~~d~~G~T~l~~A  109 (125)
T d1bi7b_          60 E------------------PNCADPATLTRPVHDAAREGFLDT-----------LVVLHRA-GARLDVRDAWGRLPVDLA  109 (125)
T ss_dssp             C------------------CCCCCTTTCCCHHHHHHHHTCHHH-----------HHHHHHH-TCCSSCCCTTCCCHHHHH
T ss_pred             c------------------cccccccccccccccccccccccc-----------ccccccc-ccccccccCCCCCHHHHH
Confidence            8                  888888876 69999999999999           9999996 999999999999999999


Q ss_pred             HhccCCcchhhHHHHHHH
Q 038344          161 AQSKRDIKYWEIGELLRR  178 (383)
Q Consensus       161 ~~~~~~~~~~~i~~~L~~  178 (383)
                      ++    .++.+++++|++
T Consensus       110 ~~----~g~~~~v~~Lls  123 (125)
T d1bi7b_         110 EE----LGHRDVARYLRA  123 (125)
T ss_dssp             HH----HTCHHHHHHHSS
T ss_pred             HH----cCCHHHHHHHHh
Confidence            99    889999999875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.3e-22  Score=172.74  Aligned_cols=135  Identities=23%  Similarity=0.291  Sum_probs=109.9

Q ss_pred             CCCcHHHHHHHcCC-----------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCch------------
Q 038344           36 RKSSALHIASQKGK-----------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA------------   86 (383)
Q Consensus        36 ~g~TpLh~Aa~~g~-----------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~------------   86 (383)
                      +|+||||+|+..|+                 ++.+|.+|+||||+|+..|+.+++++|+++|++....            
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            69999999999997                 5678999999999999999999999999999886432            


Q ss_pred             ------HHHHHhhcc---CCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccc-cCCCCH
Q 038344           87 ------PLKSFLETR---EGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVN-ANGFTA  156 (383)
Q Consensus        87 ------~l~~l~~~~---~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n-~~G~Tp  156 (383)
                            .++.+++..   ......+....+|.||||.|+..++.+.           +++|+.. |.+++..+ .+|.||
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~-----------~~~l~~~-~~~~~~~~~~~G~T~  148 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI-----------VELLVSL-GADVNAQEPCNGRTA  148 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHH-----------HHHHHHH-TCCTTCCCTTTCCCH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhh-----------eeeeccc-CcccccccccCCCCc
Confidence                  234444322   2233345556778888888888888888           8999886 88887765 579999


Q ss_pred             HHHHHhccCCcchhhHHHHHHHhcCCCCCC
Q 038344          157 WDILAQSKRDIKYWEIGELLRRARGNSAKD  186 (383)
Q Consensus       157 L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~  186 (383)
                      ||+|+.    .++.+++++|+++|+++...
T Consensus       149 L~~A~~----~g~~~~v~~Ll~~gad~~~~  174 (221)
T d1iknd_         149 LHLAVD----LQNPDLVSLLLKCGADVNRV  174 (221)
T ss_dssp             HHHHHH----TTCHHHHHHHHTTTCCSCCC
T ss_pred             cccccc----cccHHHHHHHHhcCCccccc
Confidence            999999    88999999999999998543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.87  E-value=1.8e-22  Score=182.83  Aligned_cols=137  Identities=28%  Similarity=0.356  Sum_probs=119.2

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------------------------
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------------------------   49 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------------------------   49 (383)
                      +||||+|+   ..|+.+++++|++++.+. ...+..+.||||+++..++                               
T Consensus        74 ~T~L~~A~---~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~  149 (291)
T d1s70b_          74 LTALHQAC---IDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE  149 (291)
T ss_dssp             CBHHHHHH---HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH
T ss_pred             CcHHHHHH---hcCCceeeeeeccccccc-ccccccccccccccccccccchhhcccccCcccccccccCcccccccccc
Confidence            59999995   499999999999999987 7778899999999998877                               


Q ss_pred             ------------------------------------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchH
Q 038344           50 ------------------------------------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAP   87 (383)
Q Consensus        50 ------------------------------------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~   87 (383)
                                                                ....+.+|.||||.|+..|+.++++.|++.|++     
T Consensus       150 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d-----  224 (291)
T d1s70b_         150 AMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-----  224 (291)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-----
T ss_pred             ccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceec-----
Confidence                                                      133566788888888888888888888888777     


Q ss_pred             HHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCc
Q 038344           88 LKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDI  167 (383)
Q Consensus        88 l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~  167 (383)
                                   +|.+|.+|+||||+|+..|+.++           +++|++. |+|++.+|++|+||||+|++     
T Consensus       225 -------------in~~~~~g~TpL~~A~~~g~~~i-----------v~lLl~~-Gadv~~~d~~G~TaL~~A~e-----  274 (291)
T d1s70b_         225 -------------VNIKDYDGWTPLHAAAHWGKEEA-----------CRILVEN-LCDMEAVNKVGQTAFDVADE-----  274 (291)
T ss_dssp             -------------TTCCCTTCCCHHHHHHHTTCHHH-----------HHHHHHT-TCCTTCCCTTSCCTTTSCCS-----
T ss_pred             -------------ccccccCCCCHHHHHHHcCCHHH-----------HHHHHHC-CCCCCCcCCCCCCHHHHHHH-----
Confidence                         89999999999999999999999           9999995 99999999999999999975     


Q ss_pred             chhhHHHHHHHh
Q 038344          168 KYWEIGELLRRA  179 (383)
Q Consensus       168 ~~~~i~~~L~~~  179 (383)
                         +++++|.+.
T Consensus       275 ---~~~~~L~~~  283 (291)
T d1s70b_         275 ---DILGYLEEL  283 (291)
T ss_dssp             ---GGGHHHHHH
T ss_pred             ---HHHHHHHHH
Confidence               355666554

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=8.5e-21  Score=165.43  Aligned_cols=129  Identities=22%  Similarity=0.225  Sum_probs=106.7

Q ss_pred             CcHHHHHHHcCC--------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCch---------HHHH----
Q 038344           38 SSALHIASQKGK--------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA---------PLKS----   90 (383)
Q Consensus        38 ~TpLh~Aa~~g~--------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~---------~l~~----   90 (383)
                      +||||+||..|+              ++.+|.+|+||||+|+..|+.+++++|+++|++....         ++.+    
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            489999999999              6778999999999999999999999999999876422         1111    


Q ss_pred             -----HhhccCC--cccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhc
Q 038344           91 -----FLETREG--SELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQS  163 (383)
Q Consensus        91 -----l~~~~~~--~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~  163 (383)
                           +......  .......+..+.||++.++..++.++           +++|++. |.+.+..|.+|+||||+|+. 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~l~~~-~~~~~~~~~~g~t~l~~a~~-  147 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV-----------SQFLIEN-GASVRIKDKFNQIPLHRAAS-  147 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHH-----------HHHHHHT-TCCSCCCCTTSCCHHHHHHH-
T ss_pred             cccccccccccccccccccccccccccccccccccchhhh-----------hhhhhhh-cccccccCCCCCCccchhhh-
Confidence                 1111112  22355677889999999999999999           9999986 99999999999999999999 


Q ss_pred             cCCcchhhHHHHHHHhcCC
Q 038344          164 KRDIKYWEIGELLRRARGN  182 (383)
Q Consensus       164 ~~~~~~~~i~~~L~~~ga~  182 (383)
                         .++.+++++|++.|..
T Consensus       148 ---~~~~~~~~~Ll~~~~~  163 (229)
T d1ixva_         148 ---VGSLKLIELLCGLGKS  163 (229)
T ss_dssp             ---HTCHHHHHHHHTTTCC
T ss_pred             ---cccccccccccccccc
Confidence               7889999999999853

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=3.4e-20  Score=144.96  Aligned_cols=93  Identities=20%  Similarity=0.237  Sum_probs=88.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHH
Q 038344           58 RNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKF  137 (383)
Q Consensus        58 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~  137 (383)
                      .|||++|+++|+.+++++|+++|++                  +|.+|.+|+||||+|+..|+.++           +++
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d------------------~n~~~~~g~t~lh~A~~~~~~~~-----------~~~   53 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED------------------VNRTLEGGRKPLHYAADCGQLEI-----------LEF   53 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC------------------CCCCSSSSCCTTHHHHHHSTTTH-----------HHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc------------------ccccccccccccccccccccccc-----------ccc
Confidence            3799999999999999999999887                  89999999999999999999999           999


Q ss_pred             hhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          138 FTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       138 Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      |++. |+|+|.+|.+|+||||+|+.    .++.+++++|+++|+++.
T Consensus        54 ll~~-g~din~~d~~g~tpLh~A~~----~~~~~~v~~Ll~~Gad~~   95 (118)
T d1myoa_          54 LLLK-GADINAPDKHHITPLLSAVY----EGHVSCVKLLLSKGADKT   95 (118)
T ss_dssp             HHHS-SCTTTCCSSSCSCHHHHHHT----TTCCHHHHHHHTTCCCSS
T ss_pred             cccc-cceeeecccccccchhhhhh----cCchhhhhhhhcccccce
Confidence            9996 99999999999999999999    888999999999999874

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.3e-19  Score=153.08  Aligned_cols=134  Identities=21%  Similarity=0.271  Sum_probs=108.7

Q ss_pred             CCCCcHHHHHHHcCC-----------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCch-----------
Q 038344           35 SRKSSALHIASQKGK-----------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASA-----------   86 (383)
Q Consensus        35 ~~g~TpLh~Aa~~g~-----------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~-----------   86 (383)
                      ++|+||||+||..|+                 ++.+|.+|+||||+|+..|+.+++++|+++|++....           
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            479999999999998                 5678899999999999999999999999998875432           


Q ss_pred             -------HHHHHhhcc-----------------------------------CCcccccCCCCCCCcHHHHHHHcCChhHH
Q 038344           87 -------PLKSFLETR-----------------------------------EGSELLNANDDNGMTILHLAVADKQIEIW  124 (383)
Q Consensus        87 -------~l~~l~~~~-----------------------------------~~~~~~n~~d~~g~TpLh~A~~~~~~~~~  124 (383)
                             .++......                                   .........+..|.+|||.|+..+..++ 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~-  159 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM-  159 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH-
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhh-
Confidence                   111111000                                   1111233456788999999999999999 


Q ss_pred             HHhhhchhhHHHHhhhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          125 ITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       125 ~~~l~~~~~~v~~Ll~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                                ++.+++. |.+.+.+|.+|.||||+|+.    .++.+++++|+++|++++
T Consensus       160 ----------~~~~~~~-~~~~~~~d~~g~t~L~~A~~----~g~~~~v~~Ll~~Gad~n  204 (228)
T d1k1aa_         160 ----------VQLLLQH-GANVNAQMYSGSSALHSASG----RGLLPLVRTLVRSGADSS  204 (228)
T ss_dssp             ----------HHHHHHT-TCCTTCBCTTSCBHHHHHHH----HTCHHHHHHHHHTTCCTT
T ss_pred             ----------hhhhhhh-ccccccccccCcchHHHHHH----cCCHHHHHHHHHCCCCCC
Confidence                      9999986 99999999999999999999    888999999999999873

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=2.2e-19  Score=154.06  Aligned_cols=150  Identities=23%  Similarity=0.329  Sum_probs=127.9

Q ss_pred             HHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 038344           16 EDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPD   82 (383)
Q Consensus        16 ~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~   82 (383)
                      .|+|+.|+++|+++....|.+|.||||+||..|+             ++.+|..+.++++.++..++.+...........
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            4899999999999843468999999999999999             577889999999999999998887777665443


Q ss_pred             CCch-------------------HHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhccc
Q 038344           83 AASA-------------------PLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTA  143 (383)
Q Consensus        83 ~~~~-------------------~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g  143 (383)
                      ....                   ..+.+.+   .+.+++.+|..|+||||.++..+..++           ++.+++. +
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~---~~~~~~~~~~~~~t~l~~~~~~~~~~~-----------~~~l~~~-~  146 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLIT---ADADINAADNSGKTALHWAAAVNNTEA-----------VNILLMH-H  146 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHH---TTCCTTCBCTTSCBHHHHHHHTTCHHH-----------HHHHHHT-T
T ss_pred             ccccccccccccccccccccchhhhhhhhh---hcccccccCCCCCCcchhhcccCccee-----------eeeeccc-c
Confidence            3221                   2333433   566788999999999999999999999           9999986 9


Q ss_pred             ccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          144 IEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       144 ~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      .+++..|.+|.||||+|+.    .++.+++++|+++|++++
T Consensus       147 ~~~~~~d~~g~TpL~~A~~----~g~~~~v~~Ll~~gad~n  183 (209)
T d1ot8a_         147 ANRDAQDDKDETPLFLAAR----EGSYEASKALLDNFANRE  183 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             ccccccccccccccchhcc----ccHHHHHHHHHHCCCCCC
Confidence            9999999999999999999    889999999999999874

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.78  E-value=4.9e-21  Score=178.18  Aligned_cols=78  Identities=23%  Similarity=0.365  Sum_probs=62.8

Q ss_pred             ChHHHHHHHHHcCCHHHHHH---HHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccC--CCCCcHHHH
Q 038344            2 TILQLAVAAALLGHEDFVNE---ILCQKPELARKSDSRKSSALHIASQKGK-------------CSATD--VDGRNALHL   63 (383)
Q Consensus         2 TpLh~A~~Aa~~g~~~~v~~---Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d--~~G~tpLh~   63 (383)
                      ||||+|   |+.|+.++++.   |++.++++ +..|.+|+||||+||..|+             .+..|  .+|+||||+
T Consensus        92 t~L~~A---a~~g~~~~~~~~~~L~~~~~~i-n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~  167 (346)
T d2ajaa1          92 VICFVA---AITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRL  167 (346)
T ss_dssp             HHHHHH---HHHCCHHHHHHHTTC--CCSSC-C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHH
T ss_pred             cHHHHH---HHhCCHHHHHHHHHHHhCCCcc-cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHH
Confidence            789998   55999887765   68888887 8889999999999999999             23333  468999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCC
Q 038344           64 AAMEGHIDVLEELVRAKPDA   83 (383)
Q Consensus        64 A~~~g~~~iv~~Ll~~~~~~   83 (383)
                      |+++||.+++++|++.|++.
T Consensus       168 Aa~~g~~~iv~~Ll~~~~~~  187 (346)
T d2ajaa1         168 AAENGHLHVLNRLCELAPTE  187 (346)
T ss_dssp             HHHTTCHHHHHHHHHSCGGG
T ss_pred             HHHHhhHHHHHHHHHcCCcc
Confidence            99999999999999998763

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9.9e-19  Score=143.31  Aligned_cols=106  Identities=29%  Similarity=0.415  Sum_probs=96.7

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||+|+    .|+.+++++|++++.++ +..+.+|.+|++.++..++             ++.+|.+|.||||+|++.
T Consensus        37 ~t~L~~A~----~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~  111 (156)
T d1bd8a_          37 KTALQVMM----FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE  111 (156)
T ss_dssp             CCHHHHSC----TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred             Cccccccc----ccccccccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCeeecccccc
Confidence            59999874    58999999999999997 7889999999999999998             578899999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhc
Q 038344           68 GHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTS  141 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~  141 (383)
                      |+.+++++|+ .+++                  ++.+|.+|+||||+|+..|+.++           +++|+++
T Consensus       112 ~~~~i~~~L~-~~~~------------------~~~~d~~G~TpL~~A~~~g~~~i-----------v~~Ll~h  155 (156)
T d1bd8a_         112 GHTAVVSFLA-AESD------------------LHRRDARGLTPLELALQRGAQDL-----------VDILQGH  155 (156)
T ss_dssp             TCHHHHHHHH-TTSC------------------TTCCCTTSCCHHHHHHHSCCHHH-----------HHHHHTT
T ss_pred             cccccccccc-cccc------------------ccccCCCCCCHHHHHHHcCCHHH-----------HHHHHhh
Confidence            9999999887 5666                  88999999999999999999999           9998874

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.4e-19  Score=140.97  Aligned_cols=92  Identities=25%  Similarity=0.405  Sum_probs=87.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHh
Q 038344           59 NALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFF  138 (383)
Q Consensus        59 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~L  138 (383)
                      ++||.|+..|+.++++.|+++|+|                  +|.+|.+|+||||+|+..|+.++           +++|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d------------------~n~~d~~g~t~Lh~A~~~~~~~~-----------~~~l   53 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD------------------PSLPNDEGITALHNAVCAGHTEI-----------VKFL   53 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS------------------CCCCCTTSCCHHHHHHHHTCHHH-----------HHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC------------------ccccccccccccccccccccccc-----------cccc
Confidence            579999999999999999999888                  89999999999999999999999           9999


Q ss_pred             hhcccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          139 TTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       139 l~~~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      ++. |+++|..|.+|+||||+|+.    .++.+++++|+++|++..
T Consensus        54 l~~-g~~~~~~d~~g~tpLh~A~~----~g~~~~v~~Ll~~ga~v~   94 (130)
T d1ycsb1          54 VQF-GVNVNAADSDGWTPLHCAAS----CNNVQVCKFLVESGAAVF   94 (130)
T ss_dssp             HHH-TCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred             ccc-ccccccccccCcccccccch----hhHHHHHHHHHHcCCCcc
Confidence            996 99999999999999999999    889999999999999985

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5.5e-18  Score=152.01  Aligned_cols=117  Identities=22%  Similarity=0.293  Sum_probs=103.1

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhc-CCcccccCCCCCCcHHHHHHHcCC-----------------ccccCCCCCcHHH
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQ-KPELARKSDSRKSSALHIASQKGK-----------------CSATDVDGRNALH   62 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~TpLh~Aa~~g~-----------------~~~~d~~G~tpLh   62 (383)
                      +||||+|+.   .|+.+++++|+++ +.++ +..|..|.++++.+...+.                 ++.+|.+|.||||
T Consensus       149 ~t~L~~A~~---~~~~~~~~~Ll~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~  224 (285)
T d1wdya_         149 ATALMDAAE---KGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI  224 (285)
T ss_dssp             CCHHHHHHH---HTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             chHHHHHHH---cCCHHHHHHHHhccCCCc-ccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccc
Confidence            589999954   8999999999986 5555 8889999999887766554                 4678899999999


Q ss_pred             HHHHcCCHHHHHHHHHc-CCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhc
Q 038344           63 LAAMEGHIDVLEELVRA-KPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTS  141 (383)
Q Consensus        63 ~A~~~g~~~iv~~Ll~~-~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~  141 (383)
                      .|++.|+.+++++|++. |.+                  +|.+|.+|+||||+|+++|+.++           +++|++.
T Consensus       225 ~a~~~~~~~~v~~lL~~~g~d------------------in~~d~~G~TpL~~A~~~~~~ei-----------v~~Ll~~  275 (285)
T d1wdya_         225 LAVEKKHLGLVQRLLEQEHIE------------------INDTDSDGKTALLLAVELKLKKI-----------AELLCKR  275 (285)
T ss_dssp             HHHHTTCHHHHHHHHHSSSCC------------------TTCCCTTSCCHHHHHHHTTCHHH-----------HHHHHHH
T ss_pred             hhhhcCcHHHHHHHHHcCCCC------------------CcCCCCCCCCHHHHHHHcCCHHH-----------HHHHHHC
Confidence            99999999999999985 445                  89999999999999999999999           9999996


Q ss_pred             cccccccccc
Q 038344          142 TAIEVNAVNA  151 (383)
Q Consensus       142 ~g~d~~~~n~  151 (383)
                       |+|+|..|.
T Consensus       276 -GAd~n~~d~  284 (285)
T d1wdya_         276 -GASTDCGDL  284 (285)
T ss_dssp             -SSCSCCSSC
T ss_pred             -CCCCCcccC
Confidence             999999874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=6.7e-18  Score=137.87  Aligned_cols=91  Identities=23%  Similarity=0.290  Sum_probs=76.2

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAK   80 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~   80 (383)
                      +||||+|+.....|+.+++++|++.|+++                     +.+|.+|+||||+|++.|+.+++++|+++|
T Consensus        46 ~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi---------------------n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~g  104 (154)
T d1dcqa1          46 ETALHLAVRSVDRTSLHIVDFLVQNSGNL---------------------DKQTGKGSTALHYCCLTDNAECLKLLLRGK  104 (154)
T ss_dssp             CBHHHHHHHHCCTTTHHHHHHHHHHCSCT---------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CchHHHHHHhcCCCCHHHHHHHHHcCCCh---------------------hhhhhhhccccccccccccccccccccccC
Confidence            36777776533446677777777777665                     456778999999999999999999999999


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhc
Q 038344           81 PDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTS  141 (383)
Q Consensus        81 ~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~  141 (383)
                      ++                  ++.+|.+|+||||+|++.|+.++           +++|++.
T Consensus       105 ad------------------~~~~d~~g~tpL~~A~~~~~~~i-----------~~~L~~~  136 (154)
T d1dcqa1         105 AS------------------IEIANESGETPLDIAKRLKHEHC-----------EELLTQA  136 (154)
T ss_dssp             CC------------------TTCCCTTSCCHHHHHHHTTCHHH-----------HHHHHHH
T ss_pred             cc------------------ccccCCCCCCHHHHHHHcCCHHH-----------HHHHHHh
Confidence            88                  89999999999999999999999           9999885

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=9.2e-18  Score=137.08  Aligned_cols=108  Identities=27%  Similarity=0.366  Sum_probs=99.3

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||+|    ..|+.+++++|+++++++ +..+.+|.+|++.++..++             .+..|..|.+|+|+|+..
T Consensus        35 ~TpL~~A----~~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~  109 (156)
T d1ihba_          35 RTALQVM----KLGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE  109 (156)
T ss_dssp             CCHHHHC----CSSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             ccccccc----cccccccccccccccccc-ccccccCccccccccccccccccccccccccccccccccccccccccccc
Confidence            5999987    269999999999999998 8889999999999999998             667889999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhc
Q 038344           68 GHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTS  141 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~  141 (383)
                      |+.+++++|+++++.                 +.+.+|.+|+||||+|+..++.++           +++|+++
T Consensus       110 ~~~~~~~~Ll~~~~~-----------------~~~~~d~~g~TpL~~A~~~~~~~i-----------v~~Ll~~  155 (156)
T d1ihba_         110 GHLRVVEFLVKHTAS-----------------NVGHRNHKGDTACDLARLYGRNEV-----------VSLMQAN  155 (156)
T ss_dssp             TCHHHHHHHHHHSCC-----------------CTTCCCTTSCCHHHHHHHTTCHHH-----------HHHHHHT
T ss_pred             ccccccccccccccc-----------------cccccCCCCCCHHHHHHHcCCHHH-----------HHHHHhc
Confidence            999999999999874                 378999999999999999999999           9999885

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.72  E-value=6e-20  Score=170.73  Aligned_cols=120  Identities=16%  Similarity=0.131  Sum_probs=102.0

Q ss_pred             ccCCCCCCcHHHHHHHcCC----------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhc
Q 038344           31 RKSDSRKSSALHIASQKGK----------------CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLET   94 (383)
Q Consensus        31 ~~~d~~g~TpLh~Aa~~g~----------------~~~~d~~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~   94 (383)
                      +.+|..|.||||+||.+|+                ++.+|.+|+||||+||++||.++|++|+++|++            
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~------------  151 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT------------  151 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTT------------
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC------------
Confidence            4567789999999999998                567788999999999999999999999999988            


Q ss_pred             cCCcccccCCC--CCCCcHHHHHHHcCChhHHHHhhhchhhHHHHhhhcccccc---cccccCCCCHHHHHHhccCCcch
Q 038344           95 REGSELLNAND--DNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEV---NAVNANGFTAWDILAQSKRDIKY  169 (383)
Q Consensus        95 ~~~~~~~n~~d--~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v~~Ll~~~g~d~---~~~n~~G~TpL~~A~~~~~~~~~  169 (383)
                            ++..|  .+|+||||+|+.+|+.++           +++|++. |.+.   +..+.+|.||++.|+.    .++
T Consensus       152 ------~~~~~~~~~g~t~L~~Aa~~g~~~i-----------v~~Ll~~-~~~~~~~~~~~~~~~t~l~~A~~----~g~  209 (346)
T d2ajaa1         152 ------EIMAMIQAENYHAFRLAAENGHLHV-----------LNRLCEL-APTEATAMIQAENYYAFRWAAVG----RGH  209 (346)
T ss_dssp             ------THHHHHSHHHHHHHHHHHHTTCHHH-----------HHHHHHS-CGGGHHHHHHHHHHHHHHHHHST----TCC
T ss_pred             ------ccccccccCCCChhHHHHHHhhHHH-----------HHHHHHc-CCcccccccccCCCcchhhHHhh----cCH
Confidence                  55554  569999999999999999           9999996 6654   4455677788888988    889


Q ss_pred             hhHHHHHHHhcCCCC
Q 038344          170 WEIGELLRRARGNSA  184 (383)
Q Consensus       170 ~~i~~~L~~~ga~~~  184 (383)
                      .+++++|+++|++..
T Consensus       210 ~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         210 HNVINFLLDCPVMLA  224 (346)
T ss_dssp             HHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHhCCCCcc
Confidence            999999999998763

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=1.3e-17  Score=151.60  Aligned_cols=128  Identities=20%  Similarity=0.136  Sum_probs=86.9

Q ss_pred             CCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHcCCH---HHHHHHHHcCCCCCchHHHHHhhccC
Q 038344           33 SDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAMEGHI---DVLEELVRAKPDAASAPLKSFLETRE   96 (383)
Q Consensus        33 ~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~g~~---~iv~~Ll~~~~~~~~~~l~~l~~~~~   96 (383)
                      .|.+|+||||+||..|+             ++.+|..|+||||.|+..++.   +.++.+++...               
T Consensus       103 ~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---------------  167 (301)
T d1sw6a_         103 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---------------  167 (301)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---------------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---------------
Confidence            48889999999999988             677888999999999987652   12222322111               


Q ss_pred             CcccccCCCCCCCcHHHHHHHcCChh----HHHHhhhchhhHHHHhhhc-------------------------------
Q 038344           97 GSELLNANDDNGMTILHLAVADKQIE----IWITHITYKSRAIKFFTTS-------------------------------  141 (383)
Q Consensus        97 ~~~~~n~~d~~g~TpLh~A~~~~~~~----~~~~~l~~~~~~v~~Ll~~-------------------------------  141 (383)
                        ..++.+|..|+||||.++..+..+    .....+.   ..+.+++..                               
T Consensus       168 --~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (301)
T d1sw6a_         168 --PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLD---ILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL  242 (301)
T ss_dssp             --GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHH---HHHHHHHHGGGCCEEEC----------------CHHHHHC
T ss_pred             --hhhhhcccccCCHHHHHHHHhCccccHHHHHHHHH---HHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHH
Confidence              126678889999999888654422    1110000   001111110                               


Q ss_pred             -----ccccccccccCCCCHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          142 -----TAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       142 -----~g~d~~~~n~~G~TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                           .+..+|.+|.+|+||||+|++    .++.+++++|+++||++.
T Consensus       243 ~~~~~~~~~in~~D~~G~TpLh~A~~----~g~~~iv~~Ll~~GAd~~  286 (301)
T d1sw6a_         243 DLKWIIANMLNAQDSNGDTCLNIAAR----LGNISIVDALLDYGADPF  286 (301)
T ss_dssp             SHHHHHHHTTTCCCTTSCCHHHHHHH----HCCHHHHHHHHHTTCCTT
T ss_pred             hhHHHHhcCccCCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCC
Confidence                 012378899999999999999    889999999999999984

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=4e-17  Score=132.73  Aligned_cols=101  Identities=22%  Similarity=0.314  Sum_probs=92.9

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      +||||+|+.   .++.++++.++...... ...+..+.+++|.++...+             .+.+|.+|+||||+|+..
T Consensus        35 ~t~L~~a~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~  110 (153)
T d1awcb_          35 TSPLHLAAQ---YGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH  110 (153)
T ss_dssp             CCHHHHHHH---HTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             Ccccccccc---ccccccccccccccccc-cccccccccccccccccccceeeecccccCCccccccccCchHHHhhhhc
Confidence            599999954   99999999999988877 5668888999999998887             567899999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhH
Q 038344           68 GHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI  123 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~  123 (383)
                      |+.+++++|++.|++                  +|.+|.+|+||||+|+.+|+.++
T Consensus       111 g~~~iv~~ll~~gad------------------~~~~d~~g~Tpl~~A~~~g~~ei  148 (153)
T d1awcb_         111 NHQEVVELLIKYGAD------------------VHTQSKFCKTAFDISIDNGNEDL  148 (153)
T ss_dssp             TCHHHHHHHHHTTCC------------------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             chhheeeeccccccC------------------CcccCCCCCCHHHHHHHcCCHHH
Confidence            999999999999888                  89999999999999999999999

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.8e-17  Score=153.99  Aligned_cols=101  Identities=26%  Similarity=0.332  Sum_probs=93.3

Q ss_pred             CChHHHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHcCC-------------ccccCCCCCcHHHHHHHc
Q 038344            1 MTILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVDGRNALHLAAME   67 (383)
Q Consensus         1 ~TpLh~A~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~-------------~~~~d~~G~tpLh~A~~~   67 (383)
                      .||||.|+   ..++.+++++|+++|.++ +..+..+.||||.++..++             ++.+|.+|+||||+|+++
T Consensus       265 ~~~l~~a~---~~~~~~i~~~Ll~~g~~~-~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~  340 (408)
T d1n11a_         265 LTPLHLVA---QEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ  340 (408)
T ss_dssp             CCHHHHHH---HHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CChhhhhh---hcCcHHHHHHHHHCCCcc-ccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHc
Confidence            37888885   489999999999999987 7788899999999999888             678999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhH
Q 038344           68 GHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI  123 (383)
Q Consensus        68 g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~  123 (383)
                      |+.+++++|+++|++                  +|.+|.+|+||||+|+.+|+.++
T Consensus       341 g~~~iv~~Ll~~GAd------------------~n~~d~~G~t~L~~A~~~~~~~i  378 (408)
T d1n11a_         341 GHTDIVTLLLKNGAS------------------PNEVSSDGTTPLAIAKRLGYISV  378 (408)
T ss_dssp             TCHHHHHHHHHTTCC------------------SCCCCSSSCCHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHHCCCC------------------CCCCCCCCCCHHHHHHHcCCHHH
Confidence            999999999999988                  89999999999999999999999

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.3e-16  Score=125.52  Aligned_cols=94  Identities=16%  Similarity=0.193  Sum_probs=86.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCchHHHHHhhccCCcccccCCCCCCCcHHHHHHHcCChhHHHHhhhchhhHH
Q 038344           56 DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAI  135 (383)
Q Consensus        56 ~G~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~l~~l~~~~~~~~~~n~~d~~g~TpLh~A~~~~~~~~~~~~l~~~~~~v  135 (383)
                      .+.++||+|+++|+.+++++|+++|++                  +|.+|.+|+||||.|+ .|+.++           +
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad------------------~n~~~~~g~t~l~~a~-~g~~~~-----------v   51 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGAN------------------PNAPNSYGRRPIQVMM-MGSARV-----------A   51 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCC------------------TTCCCSSSCCTTTSSC-TTCHHH-----------H
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCc------------------cccccccccccccccc-cccccc-----------c
Confidence            357899999999999999999999887                  8999999999999775 699999           9


Q ss_pred             HHhhhcccccccccccCCC-CHHHHHHhccCCcchhhHHHHHHHhcCCCC
Q 038344          136 KFFTTSTAIEVNAVNANGF-TAWDILAQSKRDIKYWEIGELLRRARGNSA  184 (383)
Q Consensus       136 ~~Ll~~~g~d~~~~n~~G~-TpL~~A~~~~~~~~~~~i~~~L~~~ga~~~  184 (383)
                      ++|++. |+++|..|..|. ||||+|+.    .++.+++++|+++|++..
T Consensus        52 ~~Ll~~-ga~~~~~~~~~~~~~L~~A~~----~g~~~~v~~Ll~~ga~~~   96 (125)
T d1bi7b_          52 ELLLLH-GAEPNCADPATLTRPVHDAAR----EGFLDTLVVLHRAGARLD   96 (125)
T ss_dssp             HHHHTT-TCCCCCCCTTTCCCHHHHHHH----HTCHHHHHHHHHHTCCSS
T ss_pred             cccccc-ccccccccccccccccccccc----cccccccccccccccccc
Confidence            999996 999999999876 69999999    889999999999999874