Citrus Sinensis ID: 038390

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKNTSLVRKHIGSFQEAIVNHEEVLKGEYRKGAKMERRFARGTEVVECMVYDFSGLRVHSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP
Secondary Structure (PSIPRED)
cccccHHHHHHHHHccEEEEEEccccccccccHHHHHHHHHHcccccEEcccccHHHHHHHHHHHHHHHHHcccHHHHHcccccEEEEEEEEEcccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccEEEEccccccccccccccccccccEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccEEEEccccccccccccccHHHHEEEcccccHHHHHccHHcccHHHHHEEEccccccccccccHHHHHcccEEEccccccHHcccccHccHHHccEEEccccHHHHccccccccHHHHHEEEcccccccccc
Coil and Loop (DISEMBL)
gisispapskvieeSRISVIVFLRNCASSTWCLDELVKIVEWKNTSLVRKHIGSFQEAIVNHEEVLKGEYRKGAKMERRFARGTEVVECMVYdfsglrvhsrtsshpfqnLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQlnlkgcknieclpnfisalkfpstlnfsgllkfrlFPEIMGCIEHLLALRLLGTAIRGLP
Flexible Loop (DISEMBL)
gisispapskvieesRISVIVFLRNCASSTWCLDELVKIVEWKNTSLVRKHIGSFQEAIVnheevlkgeyrkgaKMERRFARGTEVVECMVYDFSGLRVHSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP
Low Complexity Region (SEG)
GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKNTSLVRKHIGSFQEAIVNHEEVLKGEYRKGAKMERRFARGTEVVECMVYDFSGLRVHSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKglllsivllsgivQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP
Disordered region (IsUnstruct)
**************SRISVIVFLRNCASSTWCLDELVKIVEWKNTSLVRKHIGSFQEAIVNHEEVLKGEYRKGAKMERRFARGTEVVECMVYDFSGLRVHSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAI****
Disordered Region (DISOPRED)
*ISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKNTSLVRKHIGSFQEAIVNHEEVLKGEYRKGAKMERRFARGTEVVECMVYDFSGLRVHSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP
Disordered Region (DISEMBL)
GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKNTSLVRKHIGSFQEAIVNHEEVLKGEYRKGAKMERRFARGTEVVECMVYDFSGLRVHSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP
Disordered Region (DISPRO)
**SISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKNTSLVRKHIGSFQEAIVNHEEVLKGEYRKGAKMERRFARGTEVVECMVYDFSGLRVHSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR*L*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKNTSLVRKHIGSFQEAIVNHEEVLKGEYRKGAKMERRFARGTEVVECMVYDFSGLRVHSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	228	2.2.26 [Sep-21-2011]
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.495	0.059	0.370	1e-08
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.473	0.083	0.365	3e-06
Q40392	1144	TMV resistance protein N	N/A	no	0.302	0.060	0.373	8e-06
O82500	1095	Putative disease resistan	no	no	0.197	0.041	0.406	0.0005

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 3/116 (2%)

Query: 113  LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLK 172
            ++ ++S + L LSGCSKL  FPEI  N+K   +L + GT I+ +  SI  L  + +L+L+
Sbjct: 1324 MVDLESLEVLNLSGCSKLGNFPEISPNVK---ELYMGGTMIQEIPSSIKNLVLLEKLDLE 1380

Query: 173  GCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228
              ++++ LP  I  LK   TLN SG +    FP+    ++ L  L L  T I+ LP
Sbjct: 1381 NSRHLKNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIKELP 1436

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.
Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 7/115 (6%)

Query: 114 IFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKG 173
           + + S +TL LSGCS L+ FP I  N+ +   L L+ T I+ +  +I  L  +V+L +K 
Sbjct: 840 VNLSSLETLDLSGCSSLRSFPLISTNIVW---LYLENTAIEEIPSTIGNLHRLVRLEMKK 896

Query: 174 CKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228
           C  +E LP  ++ L    TL+ SG    R FP I    E +  L L  TAI  +P
Sbjct: 897 CTGLEVLPTDVN-LSSLETLDLSGCSSLRSFPLIS---ESIKWLYLENTAIEEIP 947

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 50.8 bits (120), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 14/83 (16%)

Query: 1   GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWK--------------NTS 46
           G +I     K IEES+ +++VF  N A+S WCL+ELVKI+E K              + S
Sbjct: 52  GATIPGELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPS 111

Query: 47  LVRKHIGSFQEAIVNHEEVLKGE 69
            VR    SF +A   HE   K +
Sbjct: 112 HVRNQKESFAKAFEEHETKYKDD 134

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 14/59 (23%)

Query: 11  VIEESRISVIVFLRNCASSTWCLDELVKIVEWK--------------NTSLVRKHIGSF 55
            I ES+ISV++F  N ASS+WCLDEL++I++ K              + S +RK  G F
Sbjct: 60  AIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKF 118

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
359495221	1181	PREDICTED: TMV resistance protein N-like	0.482	0.093	0.504	9e-19
147822714	1254	hypothetical protein VITISV_015601 [Viti	0.482	0.087	0.504	1e-18
451798988	1219	TMV resistance protein N-like protein 6	0.5	0.093	0.513	3e-18
147802475	1244	hypothetical protein VITISV_027841 [Viti	0.434	0.079	0.495	3e-18
359493273	1233	PREDICTED: TMV resistance protein N-like	0.434	0.080	0.495	5e-18
451798990	1335	TMV resistance protein N-like protein 7	0.5	0.085	0.513	6e-18
296081002	599	unnamed protein product [Vitis vinifera]	0.399	0.151	0.495	9e-18
359493487	1162	PREDICTED: TMV resistance protein N-like	0.416	0.081	0.478	1e-17
359493483	1274	PREDICTED: TMV resistance protein N-like	0.429	0.076	0.478	1e-17
359493293	1640	PREDICTED: TMV resistance protein N-like	0.486	0.067	0.486	3e-17

>gi|359495221|ref|XP_002274238.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 75/113 (66%)

Query: 116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCK 175
           ++S K L LSGCSKL KFPEI G M++L +L L+GT I  L  S+V L  +V L++K CK
Sbjct: 689 LESLKVLNLSGCSKLDKFPEIQGYMEYLSELNLEGTAIVELPSSVVFLPQLVSLDMKNCK 748

Query: 176 NIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228
           N++ LP+ I +LK   TL FSG     +FPEIM  +E L  L L GT+I+ LP
Sbjct: 749 NLKILPSNICSLKSLETLVFSGCSGLEMFPEIMEVMESLQKLLLDGTSIKELP 801

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147822714|emb|CAN68293.1| hypothetical protein VITISV_015601 [Vitis vinifera]

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 75/113 (66%)

Query: 116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCK 175
           ++S K L LSGCSKL KFPEI G M++L +L L+GT I  L  S+V L  +V L++K CK
Sbjct: 702 LESLKVLNLSGCSKLDKFPEIQGYMEYLSELNLEGTAIVELPSSVVFLPQLVSLDMKNCK 761

Query: 176 NIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228
           N++ LP+ I +LK   TL FSG     +FPEIM  +E L  L L GT+I+ LP
Sbjct: 762 NLKILPSNICSLKSLETLVFSGCSGLEMFPEIMEVMESLQKLLLDGTSIKELP 814

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798988|gb|AGF69192.1| TMV resistance protein N-like protein 6 [Vitis labrusca]

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/115 (51%), Positives = 73/115 (63%)

Query: 114 IFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKG 173
           I M+S + L LSGCSKLKKFPE+ GNM+ L  L L+GT IKGL LSI  L+G+  LNLK 
Sbjct: 713 IHMESLQILTLSGCSKLKKFPEVQGNMEHLPNLSLEGTAIKGLPLSIENLTGLALLNLKE 772

Query: 174 CKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228
           CK++E LP  I  LK   TL  S   + +  PEI   +E L+ L L G+ I  LP
Sbjct: 773 CKSLESLPRSIFKLKSLKTLILSNCTRLKKLPEIQENMESLMELFLDGSGIIELP 827

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802475|emb|CAN61853.1| hypothetical protein VITISV_027841 [Vitis vinifera]

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 75/113 (66%)

Query: 116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCK 175
           +KS +TLILS CSKL+ FPEI+ NM+ L++LLLDGT +K L  SI  L+G+V LNL+ CK
Sbjct: 670 LKSLETLILSACSKLESFPEIMENMEHLKKLLLDGTALKQLHPSIEHLNGLVSLNLRDCK 729

Query: 176 NIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228
           N+  LP  I  LK   TL  SG  K +  PE +G ++ L+ L+  GT +R  P
Sbjct: 730 NLATLPCSIGNLKSLETLIVSGCSKLQQLPENLGSLQCLVKLQADGTLVRQPP 782

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493273|ref|XP_002272034.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 75/113 (66%)

Query: 116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCK 175
           +KS +TLILS CSKL+ FPEI+ NM+ L++LLLDGT +K L  SI  L+G+V LNL+ CK
Sbjct: 702 LKSLETLILSACSKLESFPEIMENMEHLKKLLLDGTALKQLHPSIEHLNGLVSLNLRDCK 761

Query: 176 NIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228
           N+  LP  I  LK   TL  SG  K +  PE +G ++ L+ L+  GT +R  P
Sbjct: 762 NLATLPCSIGNLKSLETLIVSGCSKLQQLPENLGSLQCLVKLQADGTLVRQPP 814

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798990|gb|AGF69193.1| TMV resistance protein N-like protein 7 [Vitis labrusca]

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/115 (51%), Positives = 73/115 (63%)

Query: 114 IFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKG 173
           I M+S + L LSGCSKLKKFPE+ GNM+ L  L L+GT IKGL LSI  L+G+  LNLK 
Sbjct: 721 IHMESLQILTLSGCSKLKKFPEVQGNMEHLPNLSLEGTAIKGLPLSIENLTGLALLNLKE 780

Query: 174 CKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228
           CK++E LP  I  LK   TL  S   + +  PEI   +E L+ L L G+ I  LP
Sbjct: 781 CKSLESLPRSIFKLKSLKTLILSNCTRLKKLPEIQENMESLMELFLDGSGIIELP 835

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081002|emb|CBI18506.3| unnamed protein product [Vitis vinifera]

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 75/113 (66%)

Query: 116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCK 175
           +KS +TLILS CSKL+ FPEI+ NM+ L++LLLDGT +K L  SI  L+G+V LNL+ CK
Sbjct: 179 LKSLETLILSACSKLESFPEIMENMEHLKKLLLDGTALKQLHPSIEHLNGLVSLNLRDCK 238

Query: 176 NIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228
           N+  LP  I  LK   TL  SG  K +  PE +G ++ L+ L+  GT +R  P
Sbjct: 239 NLATLPCSIGNLKSLETLIVSGCSKLQQLPENLGSLQCLVKLQADGTLVRQPP 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493487|ref|XP_003634612.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/115 (47%), Positives = 73/115 (63%)

Query: 114 IFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKG 173
           I M+S + L LSGCSKLKKFPE+ GNM+ L  L L+GT IKGL LSI  L+G+  LNLK 
Sbjct: 727 IHMESLQILTLSGCSKLKKFPEVQGNMEHLPNLSLEGTAIKGLPLSIENLTGLALLNLKE 786

Query: 174 CKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228
           CK++E LP  I  LK   TL   G  + +  P+ +G ++ L  L   G+ I+ +P
Sbjct: 787 CKSLESLPRSIFKLKSLKTLTLCGCSELKELPDDLGSLQCLAELNADGSGIQEVP 841

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493483|ref|XP_003634610.1| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/115 (47%), Positives = 74/115 (64%)

Query: 114 IFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKG 173
           I M+S + L LSGCSKLKKFPE+ GNM+ L  L L+GT IKGL LSI  L+G+  LNLK 
Sbjct: 721 IHMESLQILTLSGCSKLKKFPEVQGNMEHLPNLSLEGTAIKGLPLSIENLTGLALLNLKE 780

Query: 174 CKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228
           CK++E LP  I  LK   TL  SG  + +  P+ +G ++ L  L   G+ ++ +P
Sbjct: 781 CKSLESLPRSIFKLKSLKTLILSGCSELKDLPDNLGSLQCLTELNADGSGVQEVP 835

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493293|ref|XP_002273413.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 74/113 (65%)

Query: 116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCK 175
           +KS  TL+LSGCS L+ FPEI+ +M+ L++LLLDGT IK L  SIV L G+  LN++ CK
Sbjct: 764 LKSLGTLVLSGCSGLEIFPEIMEDMECLQELLLDGTSIKELSPSIVHLKGLQLLNMRKCK 823

Query: 176 NIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228
           N+  LPN I +L+   TL  SG  K    PE +G ++ L+ L+  GTAI   P
Sbjct: 824 NLRSLPNSICSLRSLETLIVSGCSKLSKLPEDLGRLQFLMKLQADGTAITQPP 876

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.478	0.089	0.410	3e-19
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.552	0.099	0.363	9.1e-18
TAIR|locus:2170333	1197	CSA1 "constitutive shade-avoid	0.552	0.105	0.386	1.8e-16
TAIR|locus:2153328	1231	AT5G45230 [Arabidopsis thalian	0.508	0.094	0.386	2.4e-16
TAIR|locus:2153207	1165	AT5G45060 [Arabidopsis thalian	0.504	0.098	0.391	3.1e-16
TAIR|locus:2155322	1170	LAZ5 "LAZARUS 5" [Arabidopsis	0.504	0.098	0.381	3.2e-16
TAIR|locus:2158475	1217	RPS4 "RESISTANT TO P. SYRINGAE	0.653	0.122	0.331	2.7e-15
TAIR|locus:2205804	1556	AT1G27180 [Arabidopsis thalian	0.491	0.071	0.324	1.4e-14
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.561	0.098	0.265	4.1e-14
TAIR|locus:2122209	1179	AT4G36150 [Arabidopsis thalian	0.539	0.104	0.362	1e-12

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
 Identities = 46/112 (41%), Positives = 60/112 (53%)

Query:   117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKXXXXXXXXXXXXXQLNLKGCKN 176
             +S +TLILSGCS LKKFP I  N++ L   LLDGT IK              LNLK CK 
Sbjct:   713 QSLQTLILSGCSSLKKFPLISENVEVL---LLDGTVIKSLPESIQTFRRLALLNLKNCKK 769

Query:   177 IECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228
             ++ L + +  LK    L  SG  +  +FPEI   +E L  L +  T+I  +P
Sbjct:   770 LKHLSSDLYKLKCLQELILSGCSQLEVFPEIKEDMESLEILLMDDTSITEMP 821

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 9.1e-18, Sum P(2) = 9.1e-18
 Identities = 48/132 (36%), Positives = 65/132 (49%)

Query:    97 LRVHSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKXX 156
             L +   TS     ++ L+ ++   TLILS CS+ K+F  I  N   L +L LDGT IK  
Sbjct:   714 LNLRGCTSLESLPDITLVGLR---TLILSNCSRFKEFKLIAKN---LEELYLDGTAIKEL 767

Query:   157 XXXXXXXXXXXQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLA 216
                         L LK CKN+  LP+ I  LK    +  SG      FPE+   ++HL  
Sbjct:   768 PSTIGDLQKLISLKLKDCKNLLSLPDSIGNLKAIQEIILSGCSSLESFPEVNQNLKHLKT 827

Query:   217 LRLLGTAIRGLP 228
             L L GTAI+ +P
Sbjct:   828 LLLDGTAIKKIP 839

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170333 CSA1 "constitutive shade-avoidance1" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
 Identities = 51/132 (38%), Positives = 66/132 (50%)

Query:    97 LRVHSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKXX 156
             L +   TS      ++LI   S KTLILSGCSK K F +++ +   L  L LDGT IK  
Sbjct:   712 LNLRGCTSLKSLPEIQLI---SLKTLILSGCSKFKTF-QVISDK--LEALYLDGTAIKEL 765

Query:   157 XXXXXXXXXXXQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLA 216
                         LN+KGCK ++ LP+ +  LK    L  SG  K   FPE  G +  L  
Sbjct:   766 PCDIGRLQRLVMLNMKGCKKLKRLPDSLGQLKALEELILSGCSKLNEFPETWGNMSRLEI 825

Query:   217 LRLLGTAIRGLP 228
             L L  TAI+ +P
Sbjct:   826 LLLDETAIKDMP 837

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2153328 AT5G45230 [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
 Identities = 46/119 (38%), Positives = 62/119 (52%)

Query:   110 NLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKXXXXXXXXXXXXXQL 169
             +L  I   S KTLILSGCS  + F E++   + L  L L+GT+I               L
Sbjct:   720 SLPKITTNSLKTLILSGCSSFQTF-EVIS--EHLESLYLNGTEINGLPPAIGNLHRLIFL 776

Query:   170 NLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228
             NLK CKN+  LP+ +  LK    L  S   K ++FP++   +E LL L L GT+I  LP
Sbjct:   777 NLKDCKNLATLPDCLGELKSLQELKLSRCSKLKIFPDVTAKMESLLVLLLDGTSIAELP 835

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153207 AT5G45060 [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
 Identities = 47/120 (39%), Positives = 61/120 (50%)

Query:   109 QNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKXXXXXXXXXXXXXQ 168
             ++LR + + S KTL LS CS  K+FP I  N+K    L LDGT I               
Sbjct:   697 ESLRDVNLTSLKTLTLSNCSNFKEFPLIPENLK---ALYLDGTSISQLPDNVGNLKRLVL 753

Query:   169 LNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228
             LN+K CK +E +P  +S LK    L  SG  K + FPEI      L  L L GT+I+ +P
Sbjct:   754 LNMKDCKVLETIPTCVSELKTLQKLVLSGCSKLKEFPEINK--SSLKILLLDGTSIKTMP 811

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2155322 LAZ5 "LAZARUS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
 Identities = 45/118 (38%), Positives = 58/118 (49%)

Query:   111 LRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKXXXXXXXXXXXXXQLN 170
             L+ I + S K LILS CSKL++F  I  N   L +L LDGT IK              LN
Sbjct:   764 LQSIKVSSLKILILSDCSKLEEFEVISEN---LEELYLDGTAIKGLPPAAGDLTRLVVLN 820

Query:   171 LKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228
             ++GC  +E LP  +   K    L  SG  K    P  +  ++HL  L L GT IR +P
Sbjct:   821 MEGCTELESLPKRLGKQKALQELVLSGCSKLESVPTDVKDMKHLRLLLLDGTRIRKIP 878

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

TAIR|locus:2158475 RPS4 "RESISTANT TO P. SYRINGAE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
 Identities = 54/163 (33%), Positives = 73/163 (44%)

Query:    72 KGAKMERRFARGTEVVECMVYDFSGLRV------HSRTSSHPFQNLRLIFMKSPKTLILS 125
             K  K++R    G   ++   +D   +++         TS      + LI   S KTL LS
Sbjct:   681 KAEKLQRLNLEGCTTLKAFPHDMKKMKMLAFLNLKGCTSLESLPEMNLI---SLKTLTLS 737

Query:   126 GCSKLKKFPEIVGNMKFLRQLLLDGTDIKXXXXXXXXXXXXXQLNLKGCKNIECLPNFIS 185
             GCS  K+FP I  N++    L LDGT I               LN+K CK +E +P  + 
Sbjct:   738 GCSTFKEFPLISDNIE---TLYLDGTAISQLPMNMEKLQRLVVLNMKDCKMLEEIPGRVG 794

Query:   186 ALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228
              LK    L  S  L  ++FPEI   I  L  L L GTAI  +P
Sbjct:   795 ELKALQELILSDCLNLKIFPEID--ISFLNILLLDGTAIEVMP 835

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0004872 "receptor activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0012505 "endomembrane system" evidence=IDA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IDA

TAIR|locus:2205804 AT1G27180 [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
 Identities = 37/114 (32%), Positives = 57/114 (50%)

Query:   116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKXXXXXXXXXXXXXQLNLKGCK 175
             +K  +   LSGCS L   PE +G+M  L++LLLDGT I              +L+L GC+
Sbjct:   913 LKCLEKFFLSGCSNLSVLPENIGSMPCLKELLLDGTAISNLPYSIFRLQKLEKLSLMGCR 972

Query:   176 NIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLG-TAIRGLP 228
             +IE LP+ +  L     L        R  P  +G +++L  L L+  T++  +P
Sbjct:   973 SIEELPSCVGYLTSLEDLYLDDTA-LRNLPSSIGDLKNLQKLHLMRCTSLSTIP 1025

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
 Identities = 35/132 (26%), Positives = 62/132 (46%)

Query:    91 VYDFSGLRVHSRTSSHPFQNLRL-IFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLD 149
             + +  GL     T+    +++ + I +KS +T+ +SGCS LK FPEI  N    R+L L 
Sbjct:   668 IKNLKGLSCFYLTNCIQLKDIPIGIILKSLETVGMSGCSSLKHFPEISWNT---RRLYLS 724

Query:   150 GTDIKXXXXXXXXXXXXXQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMG 209
              T I+             +L++  C+ +  LP+++  L    +LN  G  +    P+ + 
Sbjct:   725 STKIEELPSSISRLSCLVKLDMSDCQRLRTLPSYLGHLVSLKSLNLDGCRRLENLPDTLQ 784

Query:   210 CIEHLLALRLLG 221
              +  L  L + G
Sbjct:   785 NLTSLETLEVSG 796

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122209 AT4G36150 [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 49/135 (36%), Positives = 65/135 (48%)

Query:    97 LRVHSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKXX 156
             L +   TS      + LI   S KTLIL+ CS ++KF  I  N++ L    LDGT I   
Sbjct:   704 LNMRGCTSLRVLPRMNLI---SLKTLILTNCSSIQKFQVISDNLETLH---LDGTAIGKL 757

Query:   157 XXXXXXXXXXXQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLF--P-EIMGCIEH 213
                         LNLK CK +  +P F+  LK    L  SG  K + F  P E M C++ 
Sbjct:   758 PTDMVKLQKLIVLNLKDCKMLGAVPEFLGKLKALQELVLSGCSKLKTFSVPIETMKCLQI 817

Query:   214 LLALRLLGTAIRGLP 228
             LL   L GTA++ +P
Sbjct:   818 LL---LDGTALKEMP 829

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	228
pfam01582	135	pfam01582, TIR, TIR domain	7e-10
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	2e-09
PLN03210	1153	PLN03210, PLN03210, Resistant to P	7e-09
PLN03210	1153	PLN03210, PLN03210, Resistant to P	8e-08
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.002

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score = 55.0 bits (133), Expect = 7e-10
 Identities = 23/52 (44%), Positives = 32/52 (61%)

Query: 1  GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKNTSLVRKHI 52
          G SI     + IE+SR ++++F  N ASS WCLDELV+IV+       +K I
Sbjct: 39 GESILENLFEAIEKSRRAIVIFSSNYASSEWCLDELVEIVKCALEGGGKKVI 90

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 12  IEESRISVIVFLRNCASSTWCLDELVKIVEWKNTSLVRKHIGSFQEAIVNHEEVLKGEYR 71
           IE+SRI+++V   N A S WCLDELV  +E        + I  F E I +      G++R
Sbjct: 52  IEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFR 111

Query: 72  K 72
           K
Sbjct: 112 K 112

Length = 140

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 55.3 bits (133), Expect = 7e-09
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 14/72 (19%)

Query: 3   SISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWK--------------NTSLV 48
           S+ P   + I +SRI+V+VF +N ASS+WCL+EL++IV  K              + S V
Sbjct: 54  SLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHV 113

Query: 49  RKHIGSFQEAIV 60
           RK  G F EA  
Sbjct: 114 RKQTGDFGEAFE 125

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 51.8 bits (124), Expect = 8e-08
 Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 114 IFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKG 173
           I ++S ++L LSGCS+L+ FP+I  N+     L L  T I+ +   I   S +  L++ G
Sbjct: 822 INLESLESLDLSGCSRLRTFPDISTNIS---DLNLSRTGIEEVPWWIEKFSNLSFLDMNG 878

Query: 174 CKNIECLPNFISALKFPSTLNFS 196
           C N++ +   IS LK   T++FS
Sbjct: 879 CNNLQRVSLNISKLKHLETVDFS 901

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 18/128 (14%)

Query: 91  VYDFSGLRVHSRTSSHPFQNLRLI----FMKSPKTLILSGCSKLKKFPEIVGNMKFLRQL 146
           V+  +GLR      S   +NL+ I       + +TL LS CS L + P  +  +  L  L
Sbjct: 630 VHSLTGLRNIDLRGS---KNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686

Query: 147 LLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNF---ISAL--------KFPSTLNF 195
            +   +   +L + + L  + +LNL GC  ++  P+    IS L        +FPS L  
Sbjct: 687 DMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRL 746

Query: 196 SGLLKFRL 203
             L +  L
Sbjct: 747 ENLDELIL 754

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	228
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.97
PLN03194	187	putative disease resistance protein; Provisional	99.84
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.48
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.43
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.4
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.39
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.32
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.28
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.25
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.18
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.14
PLN03150	623	hypothetical protein; Provisional	99.13
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.09
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.05
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.97
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.95
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.94
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.91
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.91
PLN03150	623	hypothetical protein; Provisional	98.89
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.85
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.85
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.77
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.74
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.74
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.73
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.71
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.7
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.67
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.63
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.62
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.61
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.6
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.6
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.58
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.54
smart00255	140	TIR Toll - interleukin 1 - resistance.	98.53
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.47
PRK15386	426	type III secretion protein GogB; Provisional	98.45
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.44
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.39
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.39
PRK15386	426	type III secretion protein GogB; Provisional	98.2
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.19
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.16
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.05
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.01
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.0
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.99
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.96
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.73
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.67
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.54
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.53
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.49
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.43
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.4
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.06
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.0
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	96.93
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.84
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.73
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.5
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.45
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.38
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.23
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.12
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.72
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.36
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.29
smart00370	26	LRR Leucine-rich repeats, outliers.	95.29
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.22
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.14
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.04
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.52
smart00370	26	LRR Leucine-rich repeats, outliers.	93.52
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.44
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.26
KOG4341	483	consensus F-box protein containing LRR [General fu	93.19
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.13
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	92.99
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.28
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	92.08
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.25
KOG4341	483	consensus F-box protein containing LRR [General fu	89.67
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	89.03
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	86.76
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	83.7
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	81.92

>PLN03210 Resistant to P

Probab=99.97  E-value=7.1e-30  Score=241.61  Aligned_cols=80  Identities=36%  Similarity=0.580  Sum_probs=74.4

Q ss_pred             CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHHhcC--------------chhhhhccccHHHHHHHHHHhh
Q 038390            1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKN--------------TSLVRKHIGSFQEAIVNHEEVL   66 (228)
Q Consensus         1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c~~--------------ps~vr~q~g~f~~af~~~~~~~   66 (228)
                      |+.|++++++|||+|||||||||+|||+|+||||||++|++|++              |++||+|+|.||+||.++++..
T Consensus        52 g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~  131 (1153)
T PLN03210         52 SQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK  131 (1153)
T ss_pred             CCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc
Confidence            88999999999999999999999999999999999999999987              9999999999999999987643


Q ss_pred             cchhhhHHhHHHHHhh
Q 038390           67 KGEYRKGAKMERRFAR   82 (228)
Q Consensus        67 ~~~~~kl~~W~~al~~   82 (228)
                        ..+++++|+.|+++
T Consensus       132 --~~~~~~~w~~al~~  145 (1153)
T PLN03210        132 --TEDEKIQWKQALTD  145 (1153)
T ss_pred             --chhHHHHHHHHHHH
Confidence              34589999999986

syringae 6; Provisional

>PLN03194 putative disease resistance protein; Provisional

Probab=99.84  E-value=3.1e-21  Score=143.62  Aligned_cols=73  Identities=22%  Similarity=0.280  Sum_probs=64.8

Q ss_pred             CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHHhcC----------chhhhhc-cccHHHHHHHHHHhhcch
Q 038390            1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKN----------TSLVRKH-IGSFQEAIVNHEEVLKGE   69 (228)
Q Consensus         1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c~~----------ps~vr~q-~g~f~~af~~~~~~~~~~   69 (228)
                      |+.|++++.+|||+||++|||||++||+|.|||+||++|++|++          |++||+| +|.             ..
T Consensus        67 G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~~~~ViPIFY~VdPsdVr~q~~~~-------------~~  133 (187)
T PLN03194         67 GDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESKKRVIPIFCDVKPSQLRVVDNGT-------------CP  133 (187)
T ss_pred             CCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHHcCCEEEEEEecCCHHHhhccccCC-------------CC
Confidence            88999999999999999999999999999999999999999987          9999997 443             13


Q ss_pred             hhhHHhHHHHHhhcccc
Q 038390           70 YRKGAKMERRFARGTEV   86 (228)
Q Consensus        70 ~~kl~~W~~al~~~~~~   86 (228)
                      .+++++|+.||.+..+.
T Consensus       134 ~e~v~~Wr~AL~~va~l  150 (187)
T PLN03194        134 DEEIRRFNWALEEAKYT  150 (187)
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            46899999999985533

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=2.7e-16  Score=115.78  Aligned_cols=122  Identities=20%  Similarity=0.263  Sum_probs=86.9

Q ss_pred             ccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCC-----
Q 038390          101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCK-----  175 (228)
Q Consensus       101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~-----  175 (228)
                      .++.+++.    +..|.+|++|++++| +++.+|..+..++.|+.|++.-|++..+|..+|.++-|+.||+.+|+     
T Consensus        44 Kl~~vppn----ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~  118 (264)
T KOG0617|consen   44 KLTVVPPN----IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENS  118 (264)
T ss_pred             ceeecCCc----HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccccccccc
Confidence            34455554    666666666666655 56666666666666666666666666666666666666666665544     


Q ss_pred             -------------------CCCccCcccCCCCCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          176 -------------------NIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       176 -------------------~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                                         ...-+|..++++++|+.|.+++ +.+-++|..+|.++.|++|.+++|.++-+|
T Consensus       119 lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqgnrl~vlp  189 (264)
T KOG0617|consen  119 LPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQGNRLTVLP  189 (264)
T ss_pred             CCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence                               2455788889999999999998 778889999999999999999999888665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.48  E-value=2e-15  Score=111.24  Aligned_cols=122  Identities=25%  Similarity=0.241  Sum_probs=100.0

Q ss_pred             cccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCc
Q 038390          100 HSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIEC  179 (228)
Q Consensus       100 ~~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~  179 (228)
                      .+..+++.     +..+.+++.|.||+| ++..+|+.+..+.+|+.|++.+|.++++|.++..+++|+.|++.-| .+..
T Consensus        21 Ssf~~~~g-----Lf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~   93 (264)
T KOG0617|consen   21 SSFEELPG-----LFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNI   93 (264)
T ss_pred             ccHhhccc-----ccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhc
Confidence            45556666     778888999999999 8999999999999999999999999999999999999999999874 6788


Q ss_pred             cCcccCCCCCCCEEeccCCCCC------------------------cccchhhhcCccccceeccccCCCCCC
Q 038390          180 LPNFISALKFPSTLNFSGLLKF------------------------RLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       180 lp~~~~~l~~L~~L~l~~c~~l------------------------~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +|..||.++.|+.||+..++.-                        .-+|..+|.+++|+.|.+.+|.+-++|
T Consensus        94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lp  166 (264)
T KOG0617|consen   94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLP  166 (264)
T ss_pred             CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCc
Confidence            9999999999999999875422                        235555666666666666666665554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.43  E-value=4e-13  Score=126.65  Aligned_cols=113  Identities=19%  Similarity=0.142  Sum_probs=51.3

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccc-ccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIK-GLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~  191 (228)
                      ++.+++|++|++++|...+.+|..++++++|++|++++|.+. .+|..++.+++|+.|++++|.....+|..++++++|+
T Consensus       160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  239 (968)
T PLN00113        160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN  239 (968)
T ss_pred             HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence            334444444444444333344444444444444444444333 2344444444444444444433334444444445555


Q ss_pred             EEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390          192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  225 (228)
                      +|++++|.....+|..++.+++|+.|++++|.++
T Consensus       240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS  273 (968)
T ss_pred             EEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence            5555443333344444555555555555555443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.40  E-value=6e-13  Score=125.48  Aligned_cols=113  Identities=19%  Similarity=0.199  Sum_probs=59.3

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccc-ccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIK-GLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~  191 (228)
                      ++++++|++|++++|...+.+|+.++.+++|++|++++|.+. .+|..++.+++|+.|++++|...+.+|..++++++|+
T Consensus       184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  263 (968)
T PLN00113        184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ  263 (968)
T ss_pred             hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence            445555555555555444445555555555555555555444 3455555555555555555544444555555555555


Q ss_pred             EEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390          192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  225 (228)
                      +|++++|.....+|..++.+++|+.|++++|.+.
T Consensus       264 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             EEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence            5555554333345555555555555555555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.39  E-value=3e-13  Score=111.44  Aligned_cols=110  Identities=23%  Similarity=0.282  Sum_probs=99.7

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcc-cCCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNF-ISALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~  191 (228)
                      ++.+++|..|+|++| .+-.+|.+++.+..|+.||++.|++..+|..+..+..++.+-.++ +.++.++.+ ++++.+|.
T Consensus       431 l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~  508 (565)
T KOG0472|consen  431 LSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLT  508 (565)
T ss_pred             HHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcc
Confidence            889999999999987 899999999999999999999999999999888777777776665 467888665 99999999


Q ss_pred             EEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390          192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  225 (228)
                      +||+.+ +.+..+|+.+|+|++|++|.+.+|+|+
T Consensus       509 tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  509 TLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             eeccCC-CchhhCChhhccccceeEEEecCCccC
Confidence            999998 889999999999999999999999998

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.32  E-value=5.9e-14  Score=115.54  Aligned_cols=109  Identities=26%  Similarity=0.266  Sum_probs=62.5

Q ss_pred             cCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccC-CCCCCCEEe
Q 038390          116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFIS-ALKFPSTLN  194 (228)
Q Consensus       116 l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~  194 (228)
                      ++.|+.||...| .++.+|+.++.|.+|.-|++..|.+..+| +|+.+..|..|.+..| .+..+|...+ ++.++.+||
T Consensus       182 m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLD  258 (565)
T KOG0472|consen  182 MKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLD  258 (565)
T ss_pred             HHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeee
Confidence            455555555544 45555555555555555555555555555 4454555555554442 3444555443 566666666


Q ss_pred             ccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          195 FSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       195 l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +++ ++++++|+.+..+.+|..||+++|.|+.+|
T Consensus       259 LRd-Nklke~Pde~clLrsL~rLDlSNN~is~Lp  291 (565)
T KOG0472|consen  259 LRD-NKLKEVPDEICLLRSLERLDLSNNDISSLP  291 (565)
T ss_pred             ccc-cccccCchHHHHhhhhhhhcccCCccccCC
Confidence            666 566666666666666666666666666655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.28  E-value=2.1e-13  Score=118.04  Aligned_cols=114  Identities=24%  Similarity=0.255  Sum_probs=77.5

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCC-CCccCcccCCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKN-IECLPNFISALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~-~~~lp~~~~~l~~L~  191 (228)
                      +..+++|+.|+||+| .++.+.-..+...+|+.|+++.|.+..+|..+..|+.|+.|.+.+|+. ...+|+.||+|..|+
T Consensus       241 ly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le  319 (1255)
T KOG0444|consen  241 LYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE  319 (1255)
T ss_pred             HhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence            666667777777766 555555555556666666666666666666666666666666665432 345677777777777


Q ss_pred             EEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      .+...+ |.+.-+|++++.+..|+.|.|++|.+..+|
T Consensus       320 vf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiTLP  355 (1255)
T KOG0444|consen  320 VFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLITLP  355 (1255)
T ss_pred             HHHhhc-cccccCchhhhhhHHHHHhcccccceeech
Confidence            777766 667777777777777777777777776655

>PLN03210 Resistant to P

Probab=99.25  E-value=2.1e-11  Score=116.55  Aligned_cols=61  Identities=31%  Similarity=0.483  Sum_probs=33.0

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCC-cccccchhcCCCCCCcEEeccCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGT-DIKGLLLSIVLLSGIVQLNLKGC  174 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~  174 (228)
                      ++.+++|++|++++|..+..+|..++.+++|+.|++++| .++.+|..+ ++++|+.|++++|
T Consensus       653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc  714 (1153)
T PLN03210        653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC  714 (1153)
T ss_pred             cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence            445555666666666555566666666666666666554 444455433 3444444444444

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.18  E-value=1.6e-12  Score=112.68  Aligned_cols=91  Identities=20%  Similarity=0.244  Sum_probs=51.4

Q ss_pred             cchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCcccchhhhcCc
Q 038390          133 FPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIE  212 (228)
Q Consensus       133 ~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~  212 (228)
                      +|..+..|.+|..+|++.|.+..+|+.+..+.+|+.|+|++| .++.+....+...+|++|+++. |.++.+|+.+..++
T Consensus       214 ~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~  291 (1255)
T KOG0444|consen  214 IPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLT  291 (1255)
T ss_pred             CCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhH
Confidence            444555555555555555555555555555555555555553 3444544444455555555555 55666666666666


Q ss_pred             cccceeccccCCC
Q 038390          213 HLLALRLLGTAIR  225 (228)
Q Consensus       213 ~L~~L~l~~n~l~  225 (228)
                      .|+.|++.+|.++
T Consensus       292 kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  292 KLTKLYANNNKLT  304 (1255)
T ss_pred             HHHHHHhccCccc
Confidence            6666666666543

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.18  E-value=5.3e-12  Score=92.50  Aligned_cols=81  Identities=27%  Similarity=0.249  Sum_probs=67.6

Q ss_pred             CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHHhcC----------------chhhh-hccccHHHHHHHHH
Q 038390            1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKN----------------TSLVR-KHIGSFQEAIVNHE   63 (228)
Q Consensus         1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c~~----------------ps~vr-~q~g~f~~af~~~~   63 (228)
                      |..+..++.++|+.||.+|+|||++|+.|.||++|+..+++|..                +++++ .+.+.|...|....
T Consensus        41 G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~  120 (141)
T PF01582_consen   41 GESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYL  120 (141)
T ss_dssp             SSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCE
T ss_pred             cccccchhhHhhhhceeeEEEeecccccccchhhhhhhhhhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhhe
Confidence            66788899999999999999999999999999999999999854                78888 78899988887765


Q ss_pred             Hhhcch--hhhHHhHHHHHh
Q 038390           64 EVLKGE--YRKGAKMERRFA   81 (228)
Q Consensus        64 ~~~~~~--~~kl~~W~~al~   81 (228)
                      .-....  .++...|+.+..
T Consensus       121 ~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen  121 RWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             ETSSSGGGGGHHHHHHHHHH
T ss_pred             eCCCCCCccHHHHHHHHHhc
Confidence            544433  456788987653

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.14  E-value=3.1e-11  Score=91.05  Aligned_cols=79  Identities=23%  Similarity=0.267  Sum_probs=20.2

Q ss_pred             cCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhc-CCCCCCcEEeccCCCCCCccC--cccCCCCCCCE
Q 038390          116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSI-VLLSGIVQLNLKGCKNIECLP--NFISALKFPST  192 (228)
Q Consensus       116 l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~  192 (228)
                      +.+|+.|++++| .++.++. +..++.|+.|++++|.|+.+++.+ ..+++|+.|++++|+ +..+-  ..+..+++|+.
T Consensus        41 l~~L~~L~Ls~N-~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~  117 (175)
T PF14580_consen   41 LDKLEVLDLSNN-QITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRV  117 (175)
T ss_dssp             -TT--EEE-TTS---S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--E
T ss_pred             hcCCCEEECCCC-CCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcce
Confidence            344455555544 3444332 334445555555555554443332 234445555554432 22221  12334444555


Q ss_pred             EeccC
Q 038390          193 LNFSG  197 (228)
Q Consensus       193 L~l~~  197 (228)
                      |++.+
T Consensus       118 L~L~~  122 (175)
T PF14580_consen  118 LSLEG  122 (175)
T ss_dssp             EE-TT
T ss_pred             eeccC
Confidence            55544

>PLN03150 hypothetical protein; Provisional

Probab=99.13  E-value=2.1e-10  Score=103.25  Aligned_cols=107  Identities=18%  Similarity=0.176  Sum_probs=91.3

Q ss_pred             CccEEEccCCCCCcccchhhcCCCCcceEEccCCccc-ccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEecc
Q 038390          118 SPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIK-GLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFS  196 (228)
Q Consensus       118 ~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~  196 (228)
                      .++.|+|++|...+.+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|+|++|...+.+|..++++++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4788999998666788999999999999999999886 788889999999999999988777899999999999999999


Q ss_pred             CCCCCcccchhhhcC-ccccceeccccCC
Q 038390          197 GLLKFRLFPEIMGCI-EHLLALRLLGTAI  224 (228)
Q Consensus       197 ~c~~l~~lp~~~~~l-~~L~~L~l~~n~l  224 (228)
                      +|.....+|..++.+ .++..+++.+|..
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcc
Confidence            976666899888764 4667888888753

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.09  E-value=1.4e-11  Score=105.95  Aligned_cols=113  Identities=23%  Similarity=0.284  Sum_probs=73.5

Q ss_pred             ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccC---cccCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLP---NFISAL  187 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp---~~~~~l  187 (228)
                      +...++|++|+|+.| .+..++ ..+..+..|++|+|+.|++..+.+ .+..+.+|+.|||++|.....+-   ..+..+
T Consensus       313 WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl  391 (873)
T KOG4194|consen  313 WSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL  391 (873)
T ss_pred             hhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence            444455555555555 344432 344455555555555555555533 35566777777777765443332   236678


Q ss_pred             CCCCEEeccCCCCCcccc-hhhhcCccccceeccccCCCCC
Q 038390          188 KFPSTLNFSGLLKFRLFP-EIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       188 ~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      ++|+.|++.| |+++++| ..+..+++|++|||.+|.|.+|
T Consensus       392 ~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSI  431 (873)
T KOG4194|consen  392 PSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASI  431 (873)
T ss_pred             hhhhheeecC-ceeeecchhhhccCcccceecCCCCcceee
Confidence            9999999999 7889998 4788999999999999988653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.05  E-value=1.2e-11  Score=106.44  Aligned_cols=114  Identities=23%  Similarity=0.229  Sum_probs=89.4

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L  190 (228)
                      +.+|+.|+.|+||+|..-..-++.+...+.|++|+|++|+|.++++ ++..|..|+.|+|++|. +..+-+ .|..+++|
T Consensus       289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL  367 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSL  367 (873)
T ss_pred             ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhh
Confidence            7788899999999884333347788888899999999999998854 67888899999999864 455533 46788999


Q ss_pred             CEEeccCCCCCc-cc---chhhhcCccccceeccccCCCCCC
Q 038390          191 STLNFSGLLKFR-LF---PEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       191 ~~L~l~~c~~l~-~l---p~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +.|||++ |.+. -+   ...+..|++|+.|++.+|+|..||
T Consensus       368 ~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~  408 (873)
T KOG4194|consen  368 HKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP  408 (873)
T ss_pred             hhhcCcC-CeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence            9999998 5443 22   234677999999999999998876

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.97  E-value=3.6e-11  Score=103.06  Aligned_cols=111  Identities=28%  Similarity=0.390  Sum_probs=94.2

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      ++.|+ |+.|-+++| +++.+|+.++.+..|..||.+.|.+..+|..++.+.+|+.|.+..| .+..+|..++.|+ |..
T Consensus       140 lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~El~~Lp-Li~  215 (722)
T KOG0532|consen  140 LCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCSLP-LIR  215 (722)
T ss_pred             hhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhCCc-eee
Confidence            44443 788888876 7888898888888899999999999999999999999999999885 4677888888554 899


Q ss_pred             EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      ||++. |++..+|-.|..|+.|++|-|.+|.+++-|
T Consensus       216 lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  216 LDFSC-NKISYLPVDFRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             eeccc-CceeecchhhhhhhhheeeeeccCCCCCCh
Confidence            99986 899999999999999999999999998754

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.95  E-value=1.1e-10  Score=100.06  Aligned_cols=111  Identities=23%  Similarity=0.332  Sum_probs=98.6

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      +.+|..|+.|||+.| .+..+|..+..++ |+.|.+++|+++.+|..++.+..|..|+.+.| .+..+|..++.+.+|+.
T Consensus       117 i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~  193 (722)
T KOG0532|consen  117 ICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRD  193 (722)
T ss_pred             hhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHH
Confidence            888999999999998 7888898888775 89999999999999999998889999999986 57889999999999999


Q ss_pred             EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      |.++. +.+..+|+.++.|+ |..||+++|++..||
T Consensus       194 l~vrR-n~l~~lp~El~~Lp-Li~lDfScNkis~iP  227 (722)
T KOG0532|consen  194 LNVRR-NHLEDLPEELCSLP-LIRLDFSCNKISYLP  227 (722)
T ss_pred             HHHhh-hhhhhCCHHHhCCc-eeeeecccCceeecc
Confidence            99998 77889998888665 899999999999887

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.94  E-value=2.1e-09  Score=97.99  Aligned_cols=99  Identities=19%  Similarity=0.265  Sum_probs=56.4

Q ss_pred             CCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEecc
Q 038390          117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFS  196 (228)
Q Consensus       117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~  196 (228)
                      ++|++|++++| .+..+|..+.  .+|+.|++++|.+..+|..+.  .+|+.|++++| .++.+|..+.  ++|+.|+++
T Consensus       220 ~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls  291 (754)
T PRK15370        220 GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVY  291 (754)
T ss_pred             cCCCEEECCCC-ccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECC
Confidence            46667777766 4566665443  356667777776666665543  46777777654 4556665543  467777777


Q ss_pred             CCCCCcccchhhhcCccccceeccccCCCC
Q 038390          197 GLLKFRLFPEIMGCIEHLLALRLLGTAIRG  226 (228)
Q Consensus       197 ~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~  226 (228)
                      + +.++.+|..+.  ++|+.|++++|.++.
T Consensus       292 ~-N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        292 D-NSIRTLPAHLP--SGITHLNVQSNSLTA  318 (754)
T ss_pred             C-CccccCcccch--hhHHHHHhcCCcccc
Confidence            6 45555554332  234444444444443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.91  E-value=2.2e-10  Score=91.69  Aligned_cols=108  Identities=23%  Similarity=0.267  Sum_probs=64.3

Q ss_pred             cCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEec
Q 038390          116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNF  195 (228)
Q Consensus       116 l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l  195 (228)
                      +|.++.|++|+| .+..+.. +..+.+|..|||++|.+.++..+-..|-|++.|.|.+| .+.++ +.++++.+|..||+
T Consensus       306 ~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~L-SGL~KLYSLvnLDl  381 (490)
T KOG1259|consen  306 APKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETL-SGLRKLYSLVNLDL  381 (490)
T ss_pred             ccceeEEecccc-ceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhh-hhhHhhhhheeccc
Confidence            344444444444 2222222 34444444445544444444333333444444444442 23333 34677889999999


Q ss_pred             cCCCCCcccc--hhhhcCccccceeccccCCCCCC
Q 038390          196 SGLLKFRLFP--EIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       196 ~~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      ++ |++..+-  ..+|+++.|+++.|.+|.+..+|
T Consensus       382 ~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  382 SS-NQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             cc-cchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            99 6777765  46899999999999999998765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.91  E-value=3.5e-09  Score=96.56  Aligned_cols=111  Identities=23%  Similarity=0.326  Sum_probs=90.4

Q ss_pred             ccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCcc
Q 038390          101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECL  180 (228)
Q Consensus       101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l  180 (228)
                      .++.+|..    +  .++|+.|++++| .+..+|..+.  .+|++|++++|.++.+|..+.  .+|+.|++++|. +..+
T Consensus       189 ~LtsLP~~----I--p~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~L  256 (754)
T PRK15370        189 GLTTIPAC----I--PEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITEL  256 (754)
T ss_pred             CcCcCCcc----c--ccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcC
Confidence            45556543    3  257999999998 7888988665  589999999999999997664  479999999975 6788


Q ss_pred             CcccCCCCCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          181 PNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       181 p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      |..+.  .+|+.|++++ +.++.+|+.+.  ++|+.|++++|+|+.+|
T Consensus       257 P~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP  299 (754)
T PRK15370        257 PERLP--SALQSLDLFH-NKISCLPENLP--EELRYLSVYDNSIRTLP  299 (754)
T ss_pred             ChhHh--CCCCEEECcC-CccCccccccC--CCCcEEECCCCccccCc
Confidence            87664  5899999997 78889998664  58999999999999876

>PLN03150 hypothetical protein; Provisional

Probab=98.89  E-value=3.4e-09  Score=95.47  Aligned_cols=86  Identities=22%  Similarity=0.263  Sum_probs=77.7

Q ss_pred             cceEEccCCccc-ccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCcccchhhhcCccccceeccc
Q 038390          143 LRQLLLDGTDIK-GLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLG  221 (228)
Q Consensus       143 L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~  221 (228)
                      +..|+|++|.+. .+|..++.+++|+.|+|++|...+.+|..++.+++|+.|++++|.....+|+.++.+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            778999999887 6788999999999999999877778999999999999999999666568999999999999999999


Q ss_pred             cCCC-CCC
Q 038390          222 TAIR-GLP  228 (228)
Q Consensus       222 n~l~-~lP  228 (228)
                      |+++ .+|
T Consensus       500 N~l~g~iP  507 (623)
T PLN03150        500 NSLSGRVP  507 (623)
T ss_pred             CcccccCC
Confidence            9998 555

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.85  E-value=2.8e-09  Score=80.45  Aligned_cols=109  Identities=20%  Similarity=0.216  Sum_probs=43.5

Q ss_pred             ccccCCccEEEccCCCCCcccchhhc-CCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCccc-CCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVG-NMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFI-SALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~-~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L  190 (228)
                      +.+..++++|+|++| .+..+.. ++ .+.+|+.|++++|.|+.++ .+..++.|+.|++++| .+++++..+ ..+++|
T Consensus        15 ~~n~~~~~~L~L~~n-~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   15 YNNPVKLRELNLRGN-QISTIEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNL   90 (175)
T ss_dssp             ----------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             ccccccccccccccc-ccccccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcC
Confidence            455667899999999 6766654 54 5789999999999999886 5788999999999996 567776544 468999


Q ss_pred             CEEeccCCCCCcccc--hhhhcCccccceeccccCCCC
Q 038390          191 STLNFSGLLKFRLFP--EIMGCIEHLLALRLLGTAIRG  226 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~~  226 (228)
                      ++|++++ |.+..+-  ..++.+++|+.|++.+|.+++
T Consensus        91 ~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   91 QELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             -EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            9999998 7777654  457789999999999998864

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.85  E-value=1.4e-09  Score=100.59  Aligned_cols=109  Identities=27%  Similarity=0.312  Sum_probs=79.2

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      +..++.|++|||++|..+..+|+.++++-+|++|+++++.++.+|.++++|+.|.+|++..+..+..+|.....+.+|++
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~  646 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV  646 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence            55688888888888888888888888888888888888888888888888888888888887666666665566888888


Q ss_pred             EeccCCC-CCc-ccchhhhcCccccceeccc
Q 038390          193 LNFSGLL-KFR-LFPEIMGCIEHLLALRLLG  221 (228)
Q Consensus       193 L~l~~c~-~l~-~lp~~~~~l~~L~~L~l~~  221 (228)
                      |.+..-. ..+ ..-..+.++++|+.+....
T Consensus       647 L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  647 LRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             EEeeccccccchhhHHhhhcccchhhheeec
Confidence            8876521 111 1223345555665555543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.77  E-value=1.1e-09  Score=98.61  Aligned_cols=105  Identities=27%  Similarity=0.272  Sum_probs=91.8

Q ss_pred             ccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEe
Q 038390          115 FMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLN  194 (228)
Q Consensus       115 ~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~  194 (228)
                      +.-+|+.||+++| .+..+|..+..+.+|+.|+++.|.|..+|.++.++.+|++|+|.+ +.+..+|.++..+++|+.|+
T Consensus        43 ~~v~L~~l~lsnn-~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~Ld  120 (1081)
T KOG0618|consen   43 KRVKLKSLDLSNN-QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLD  120 (1081)
T ss_pred             heeeeEEeecccc-ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhcccccc
Confidence            3345899999987 788889888889999999999999999998899999999999986 46888999999999999999


Q ss_pred             ccCCCCCcccchhhhcCccccceecccc
Q 038390          195 FSGLLKFRLFPEIMGCIEHLLALRLLGT  222 (228)
Q Consensus       195 l~~c~~l~~lp~~~~~l~~L~~L~l~~n  222 (228)
                      +++ |.+..+|..+..+..+..+..++|
T Consensus       121 lS~-N~f~~~Pl~i~~lt~~~~~~~s~N  147 (1081)
T KOG0618|consen  121 LSF-NHFGPIPLVIEVLTAEEELAASNN  147 (1081)
T ss_pred             cch-hccCCCchhHHhhhHHHHHhhhcc
Confidence            999 788899998888888888888888

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.74  E-value=1.5e-08  Score=92.29  Aligned_cols=37  Identities=14%  Similarity=0.113  Sum_probs=28.3

Q ss_pred             CCCEEeccCCCCCcccchhhhcCccccceeccccCCCC
Q 038390          189 FPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRG  226 (228)
Q Consensus       189 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~  226 (228)
                      +|+.|++++ |.++.+|+.++.+++|+.|+|++|.|++
T Consensus       423 ~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        423 GLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             hhhhhhhcc-CcccccChHHhhccCCCeEECCCCCCCc
Confidence            456666666 5667788888888888889998888873

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.74  E-value=1.5e-08  Score=63.09  Aligned_cols=57  Identities=23%  Similarity=0.303  Sum_probs=37.0

Q ss_pred             CCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCC
Q 038390          117 KSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGC  174 (228)
Q Consensus       117 ~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~  174 (228)
                      ++|++|++++| .+..+| +.+..+++|++|++++|.++.+|+ .+..+++|++|++++|
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            35667777776 555655 356667777777777777766653 4566666666666665

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.73  E-value=1.3e-09  Score=98.25  Aligned_cols=110  Identities=25%  Similarity=0.295  Sum_probs=70.0

Q ss_pred             CCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEecc
Q 038390          117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFS  196 (228)
Q Consensus       117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~  196 (228)
                      ..++.|+++.|..+..--+.+.+.-.|+.|++++|.+...|..+-.+.+|+.|+++. +.+...|.+++++.+|++|.|.
T Consensus        21 ~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~-n~i~~vp~s~~~~~~l~~lnL~   99 (1081)
T KOG0618|consen   21 EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSR-NYIRSVPSSCSNMRNLQYLNLK   99 (1081)
T ss_pred             HHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccch-hhHhhCchhhhhhhcchhheec
Confidence            346666666663333222334444446777777777776666666666777777765 3566666666677777777776


Q ss_pred             CCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          197 GLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       197 ~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      + +.+..+|.++..+++|+.|++++|.+..+|
T Consensus       100 ~-n~l~~lP~~~~~lknl~~LdlS~N~f~~~P  130 (1081)
T KOG0618|consen  100 N-NRLQSLPASISELKNLQYLDLSFNHFGPIP  130 (1081)
T ss_pred             c-chhhcCchhHHhhhcccccccchhccCCCc
Confidence            5 666777777777777777777777766555

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.71  E-value=6.6e-09  Score=96.20  Aligned_cols=109  Identities=28%  Similarity=0.279  Sum_probs=91.9

Q ss_pred             cccCCccEEEccCCCC-Cccc-chhhcCCCCcceEEccCC-cccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCC
Q 038390          114 IFMKSPKTLILSGCSK-LKKF-PEIVGNMKFLRQLLLDGT-DIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFP  190 (228)
Q Consensus       114 ~~l~~L~~L~ls~~~~-l~~~-p~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L  190 (228)
                      ...+.|++|-+.+|.. +..+ +++|..|+.|+.|||++| .+.++|.+|+.|.+|++|++++ ..+..+|.++++|++|
T Consensus       542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKL  620 (889)
T ss_pred             CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhh
Confidence            3445788888888752 4444 456888999999999988 6789999999999999999998 4688999999999999


Q ss_pred             CEEeccCCCCCcccchhhhcCccccceeccccC
Q 038390          191 STLNFSGLLKFRLFPEIMGCIEHLLALRLLGTA  223 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~  223 (228)
                      .+|++..+..+..+|.....|++|++|.+....
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeeccc
Confidence            999999978788888888889999999887654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.70  E-value=3.7e-08  Score=89.85  Aligned_cols=100  Identities=22%  Similarity=0.265  Sum_probs=60.2

Q ss_pred             CCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEecc
Q 038390          117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFS  196 (228)
Q Consensus       117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~  196 (228)
                      ++|++|++++| .+..+|..   .++|+.|++++|.+..+|..   ..+|+.|++++| .+..+|..   +++|+.|+++
T Consensus       242 ~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS  310 (788)
T PRK15387        242 PELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGN-QLTSLPVL---PPGLQELSVS  310 (788)
T ss_pred             CCCcEEEecCC-ccCcccCc---ccccceeeccCCchhhhhhc---hhhcCEEECcCC-cccccccc---ccccceeECC
Confidence            45566666655 45555532   23555566666655555532   245667777775 45666652   4678999998


Q ss_pred             CCCCCcccchhhhc-------------C----ccccceeccccCCCCCC
Q 038390          197 GLLKFRLFPEIMGC-------------I----EHLLALRLLGTAIRGLP  228 (228)
Q Consensus       197 ~c~~l~~lp~~~~~-------------l----~~L~~L~l~~n~l~~lP  228 (228)
                      + |.+..+|.....             +    .+|+.|++++|+|+.+|
T Consensus       311 ~-N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP  358 (788)
T PRK15387        311 D-NQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLP  358 (788)
T ss_pred             C-CccccCCCCcccccccccccCccccccccccccceEecCCCccCCCC
Confidence            8 567766642211             1    26777888888877776

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.67  E-value=4.4e-09  Score=84.38  Aligned_cols=110  Identities=22%  Similarity=0.184  Sum_probs=86.6

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      +-..+.|+++|||+| .++.+.+.+.-++.++.|+++.|.+..+.. +..|.+|+.|||++|. +..+-..=.++-+.++
T Consensus       280 ~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  280 ADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKT  356 (490)
T ss_pred             cchHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEee
Confidence            344567889999998 788888888888999999999999987764 7888999999999864 5555443345667888


Q ss_pred             EeccCCCCCcccchhhhcCccccceeccccCCCCC
Q 038390          193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      |.+++ |.+..+. .++.+=+|..||+++|+|.++
T Consensus       357 L~La~-N~iE~LS-GL~KLYSLvnLDl~~N~Ie~l  389 (490)
T KOG1259|consen  357 LKLAQ-NKIETLS-GLRKLYSLVNLDLSSNQIEEL  389 (490)
T ss_pred             eehhh-hhHhhhh-hhHhhhhheeccccccchhhH
Confidence            88988 6676664 567788999999999998753

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.63  E-value=1.4e-08  Score=86.79  Aligned_cols=111  Identities=32%  Similarity=0.362  Sum_probs=48.5

Q ss_pred             cccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEE
Q 038390          114 IFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTL  193 (228)
Q Consensus       114 ~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L  193 (228)
                      ..++.|+.|++++| .+..+|...+.++.|+.|++++|.+..+|..+..+..|+.+.+++|. ....+..+.++.++..+
T Consensus       160 ~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l  237 (394)
T COG4886         160 RNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGL  237 (394)
T ss_pred             hccccccccccCCc-hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccccccc
Confidence            44444444444444 34444443334444444444444444444443333444444444431 11222222333333333


Q ss_pred             eccCCCCCcccchhhhcCccccceeccccCCCCC
Q 038390          194 NFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       194 ~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      .+.+ +.+..+|..++.+++++.|++++|.++++
T Consensus       238 ~l~~-n~~~~~~~~~~~l~~l~~L~~s~n~i~~i  270 (394)
T COG4886         238 ELSN-NKLEDLPESIGNLSNLETLDLSNNQISSI  270 (394)
T ss_pred             ccCC-ceeeeccchhccccccceecccccccccc
Confidence            3332 33333345555555566666666655544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.62  E-value=2.7e-08  Score=82.23  Aligned_cols=110  Identities=15%  Similarity=0.123  Sum_probs=80.1

Q ss_pred             CCccEEEccCCCCC----cccchhhcCC-CCcceEEccCCccc-----ccchhcCCCCCCcEEeccCCCCCC----ccCc
Q 038390          117 KSPKTLILSGCSKL----KKFPEIVGNM-KFLRQLLLDGTDIK-----GLLLSIVLLSGIVQLNLKGCKNIE----CLPN  182 (228)
Q Consensus       117 ~~L~~L~ls~~~~l----~~~p~~~~~l-~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~----~lp~  182 (228)
                      ++|+.|++++|...    ..+...+..+ ++|+.|++++|.+.     .++..+..+++|+.|++++|....    .++.
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  187 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE  187 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence            44999999998533    1234455666 88999999999877     345567778899999999875432    2444


Q ss_pred             ccCCCCCCCEEeccCCCCC----cccchhhhcCccccceeccccCCCC
Q 038390          183 FISALKFPSTLNFSGLLKF----RLFPEIMGCIEHLLALRLLGTAIRG  226 (228)
Q Consensus       183 ~~~~l~~L~~L~l~~c~~l----~~lp~~~~~l~~L~~L~l~~n~l~~  226 (228)
                      .+..+++|+.|++++|..-    ..++..+..+++|++|++++|.+++
T Consensus       188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence            4566689999999996432    2345566778899999999998863

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.61  E-value=2e-08  Score=85.80  Aligned_cols=108  Identities=24%  Similarity=0.353  Sum_probs=77.6

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCC-CcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMK-FLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~  191 (228)
                      +..++.++.|++.++ .+..+|...+.+. +|+.|++++|.+..+|..++.+++|+.|++++| .+.++|...+.+++|+
T Consensus       112 ~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~  189 (394)
T COG4886         112 LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN  189 (394)
T ss_pred             hhcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence            445566777777776 6777777666664 777777777777777767777777777777775 4666776655777777


Q ss_pred             EEeccCCCCCcccchhhhcCccccceeccccC
Q 038390          192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTA  223 (228)
Q Consensus       192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~  223 (228)
                      .|++++ +.+..+|..++.+..|+.+++++|.
T Consensus       190 ~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         190 NLDLSG-NKISDLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             heeccC-CccccCchhhhhhhhhhhhhhcCCc
Confidence            777777 6777777766666667777777774

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.60  E-value=4.1e-08  Score=81.12  Aligned_cols=112  Identities=18%  Similarity=0.135  Sum_probs=82.5

Q ss_pred             cccc-CCccEEEccCCCCC----cccchhhcCCCCcceEEccCCccc-----ccchhcCCCCCCcEEeccCCCCC----C
Q 038390          113 LIFM-KSPKTLILSGCSKL----KKFPEIVGNMKFLRQLLLDGTDIK-----GLLLSIVLLSGIVQLNLKGCKNI----E  178 (228)
Q Consensus       113 ~~~l-~~L~~L~ls~~~~l----~~~p~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~----~  178 (228)
                      +..+ ++|+.|++++|...    ..++..+..++.|++|++++|.++     .++..+..+++|+.|++++|...    .
T Consensus       132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  211 (319)
T cd00116         132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS  211 (319)
T ss_pred             HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence            5566 89999999999543    134566777889999999999887     34555667789999999998532    2


Q ss_pred             ccCcccCCCCCCCEEeccCCCCCcc-cchhh-hc----CccccceeccccCCC
Q 038390          179 CLPNFISALKFPSTLNFSGLLKFRL-FPEIM-GC----IEHLLALRLLGTAIR  225 (228)
Q Consensus       179 ~lp~~~~~l~~L~~L~l~~c~~l~~-lp~~~-~~----l~~L~~L~l~~n~l~  225 (228)
                      .++..+..+++|++|++++|. ++. -+..+ ..    .+.|+.|++++|.++
T Consensus       212 ~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         212 ALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            244556788999999999964 442 11222 22    378999999999986

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.60  E-value=3e-09  Score=87.87  Aligned_cols=108  Identities=19%  Similarity=0.231  Sum_probs=79.4

Q ss_pred             CccEEEccCCCCCcccc-hhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCccCc-ccCCCCCCCEEe
Q 038390          118 SPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECLPN-FISALKFPSTLN  194 (228)
Q Consensus       118 ~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~  194 (228)
                      ....++|..| .++.+| ..|+.+++|+.|||+.|.|+.| |..+..+.+|..|.+.+++.++++|. .|++|.+|+.|.
T Consensus        68 ~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            3566778777 677765 4678888888888888888877 66788888888888888777888876 467788888777


Q ss_pred             ccCCCCCccc-chhhhcCccccceeccccCCCCC
Q 038390          195 FSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       195 l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      +.- +.+.-+ .+.+..|++|..|.+-+|.+..+
T Consensus       147 lNa-n~i~Cir~~al~dL~~l~lLslyDn~~q~i  179 (498)
T KOG4237|consen  147 LNA-NHINCIRQDALRDLPSLSLLSLYDNKIQSI  179 (498)
T ss_pred             cCh-hhhcchhHHHHHHhhhcchhcccchhhhhh
Confidence            776 344433 35677777777777777776654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.58  E-value=6.5e-08  Score=60.14  Aligned_cols=56  Identities=21%  Similarity=0.294  Sum_probs=25.3

Q ss_pred             CcEEeccCCCCCCccCc-ccCCCCCCCEEeccCCCCCcccc-hhhhcCccccceeccccC
Q 038390          166 IVQLNLKGCKNIECLPN-FISALKFPSTLNFSGLLKFRLFP-EIMGCIEHLLALRLLGTA  223 (228)
Q Consensus       166 L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n~  223 (228)
                      |+.|++++| .++.+|. .+.++++|++|++++ +.++.+| ..+..+++|++|++++|+
T Consensus         3 L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence            444444443 2334432 334444555555554 3344443 244555555555555554

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.54  E-value=7.9e-09  Score=73.79  Aligned_cols=91  Identities=19%  Similarity=0.124  Sum_probs=65.4

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCC-CCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNM-KFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l-~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~  191 (228)
                      +....+|+..+|++| .++.+|+.+... +..+.|++++|.++++|.++..++.|+.|+++.| .+...|.-+..|.+|.
T Consensus        49 l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~  126 (177)
T KOG4579|consen   49 LSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLD  126 (177)
T ss_pred             HhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHH
Confidence            445566777788887 677777665543 4677888888888888888888888888888875 4566777676777777


Q ss_pred             EEeccCCCCCcccch
Q 038390          192 TLNFSGLLKFRLFPE  206 (228)
Q Consensus       192 ~L~l~~c~~l~~lp~  206 (228)
                      .|+..+ +....+|-
T Consensus       127 ~Lds~~-na~~eid~  140 (177)
T KOG4579|consen  127 MLDSPE-NARAEIDV  140 (177)
T ss_pred             HhcCCC-CccccCcH
Confidence            777776 55556653

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=98.53  E-value=3.9e-07  Score=66.34  Aligned_cols=75  Identities=31%  Similarity=0.442  Sum_probs=61.5

Q ss_pred             hHHHHHhhcceEEEEecCCCcchhccHHHHHHHHHhc-----C----------chhhhhccccHHHHHHHHHHhhcchhh
Q 038390            7 APSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWK-----N----------TSLVRKHIGSFQEAIVNHEEVLKGEYR   71 (228)
Q Consensus         7 ~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c~-----~----------ps~vr~q~g~f~~af~~~~~~~~~~~~   71 (228)
                      ++.++|++|+..|+++|++|..|.||..|+....++.     +          |+.+..+.+.++.++......+.....
T Consensus        47 ~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~  126 (140)
T smart00255       47 EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEK  126 (140)
T ss_pred             HHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchh
Confidence            7899999999999999999999999999999999864     2          678999999999998877444444433


Q ss_pred             hHHhHHHHHhh
Q 038390           72 KGAKMERRFAR   82 (228)
Q Consensus        72 kl~~W~~al~~   82 (228)
                      + ..|+.....
T Consensus       127 ~-~fW~~~~~~  136 (140)
T smart00255      127 E-RFWKKALYA  136 (140)
T ss_pred             H-HHHHHHHHH
Confidence            3 678876654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.47  E-value=1.2e-07  Score=54.80  Aligned_cols=38  Identities=18%  Similarity=0.247  Sum_probs=18.8

Q ss_pred             CCCEEeccCCCCCcccchhhhcCccccceeccccCCCCC
Q 038390          189 FPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       189 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      +|++|++++ +.++.+|+.+++|++|+.|++++|.|+++
T Consensus         2 ~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSN-NQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccC-CCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            455555555 34455555455555555555555555443

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.45  E-value=3.1e-07  Score=77.66  Aligned_cols=93  Identities=24%  Similarity=0.396  Sum_probs=58.7

Q ss_pred             CccEEEccCCCCCcccchhhcCCCCcceEEccCC-cccccchhcCCCCCCcEEeccC--CCCCCccCcccCCC-------
Q 038390          118 SPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGT-DIKGLLLSIVLLSGIVQLNLKG--CKNIECLPNFISAL-------  187 (228)
Q Consensus       118 ~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~--~~~~~~lp~~~~~l-------  187 (228)
                      +|++|.+++|..+..+|+.+.  .+|++|++++| .+..+|.+      |+.|++..  +..+..+|.++..|       
T Consensus        73 sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~  144 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSLEIKGSATDSIKNVPNGLTSLSINSYNP  144 (426)
T ss_pred             CCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceEEeCCCCCcccccCcchHhheecccccc
Confidence            588888888888888887553  57888888887 77777754      44444443  22355666554333       


Q ss_pred             -----------CCCCEEeccCCCCCcccchhhhcCc-cccceecccc
Q 038390          188 -----------KFPSTLNFSGLLKFRLFPEIMGCIE-HLLALRLLGT  222 (228)
Q Consensus       188 -----------~~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~n  222 (228)
                                 ++|++|++++|..+ .+|   ..++ +|+.|+++.|
T Consensus       145 ~~~~~lp~~LPsSLk~L~Is~c~~i-~LP---~~LP~SLk~L~ls~n  187 (426)
T PRK15386        145 ENQARIDNLISPSLKTLSLTGCSNI-ILP---EKLPESLQSITLHIE  187 (426)
T ss_pred             ccccccccccCCcccEEEecCCCcc-cCc---ccccccCcEEEeccc
Confidence                       25677777776533 222   2233 7777777665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=4.3e-08  Score=82.05  Aligned_cols=126  Identities=17%  Similarity=0.146  Sum_probs=62.2

Q ss_pred             cccccccccccccc---------ccccCCccEEEccCCCCCcccch-hhcCCCCcceEEccCCccc--ccchhcC-----
Q 038390           99 VHSRTSSHPFQNLR---------LIFMKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDIK--GLLLSIV-----  161 (228)
Q Consensus        99 ~~~l~~l~~~~nl~---------~~~l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i~--~lp~~~~-----  161 (228)
                      |+++++++.+.||-         ..+|++|+.|+|+.|...-...+ .-..+++|+.|.++.|.++  ++-....     
T Consensus       145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl  224 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL  224 (505)
T ss_pred             CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence            56666666665544         55677777777777632211111 1123455666666666554  1111122     


Q ss_pred             -------------------CCCCCcEEeccCCCCCCccC--cccCCCCCCCEEeccCCCCCcc--cchh-----hhcCcc
Q 038390          162 -------------------LLSGIVQLNLKGCKNIECLP--NFISALKFPSTLNFSGLLKFRL--FPEI-----MGCIEH  213 (228)
Q Consensus       162 -------------------~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~c~~l~~--lp~~-----~~~l~~  213 (228)
                                         .+..|+.|+|++|+. ..++  ...+.++.|..|+++.| .+.+  +|+.     .-.+++
T Consensus       225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~k  302 (505)
T KOG3207|consen  225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPK  302 (505)
T ss_pred             HHhhhhcccccceecchhhhhhHHhhccccCCcc-cccccccccccccchhhhhcccc-CcchhcCCCccchhhhccccc
Confidence                               234455555555432 2233  22445555555555552 2332  2322     234566


Q ss_pred             ccceeccccCCCC
Q 038390          214 LLALRLLGTAIRG  226 (228)
Q Consensus       214 L~~L~l~~n~l~~  226 (228)
                      |++|+++.|+|.+
T Consensus       303 L~~L~i~~N~I~~  315 (505)
T KOG3207|consen  303 LEYLNISENNIRD  315 (505)
T ss_pred             ceeeecccCcccc
Confidence            6666666666644

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.39  E-value=8.7e-09  Score=91.10  Aligned_cols=117  Identities=21%  Similarity=0.149  Sum_probs=94.4

Q ss_pred             ccccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCC
Q 038390           99 VHSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNI  177 (228)
Q Consensus        99 ~~~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~  177 (228)
                      |+.|+.++.+    +.-++.|+.|||++| ++.... .+..++.|++||+++|.+..+|.- ...+. |+.|.+++| -+
T Consensus       173 yN~L~~mD~S----Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l  244 (1096)
T KOG1859|consen  173 YNRLVLMDES----LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-AL  244 (1096)
T ss_pred             hhhHHhHHHH----HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc-HH
Confidence            6777778877    888999999999999 666665 688899999999999999988853 23344 999999985 46


Q ss_pred             CccCcccCCCCCCCEEeccCCCCCcccc--hhhhcCccccceeccccCCC
Q 038390          178 ECLPNFISALKFPSTLNFSGLLKFRLFP--EIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       178 ~~lp~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~  225 (228)
                      +++- .+.+|++|+.||++. |.+..+.  +-++.|..|+.|+|.||.+-
T Consensus       245 ~tL~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  245 TTLR-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             Hhhh-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            6664 478999999999999 6666554  34677889999999999763

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.39  E-value=5.1e-07  Score=52.08  Aligned_cols=33  Identities=27%  Similarity=0.285  Sum_probs=16.6

Q ss_pred             CcceEEccCCcccccchhcCCCCCCcEEeccCC
Q 038390          142 FLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGC  174 (228)
Q Consensus       142 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~  174 (228)
                      +|++|++++|.|+++|+.+++|++|+.|++++|
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence            445555555555555554555555555555554

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.20  E-value=2.1e-06  Score=72.72  Aligned_cols=98  Identities=23%  Similarity=0.409  Sum_probs=57.9

Q ss_pred             CCccEEEccCCCCCcccchhhcCCCCcceEEccCC---cccccchhcCCC------------------CCCcEEeccCCC
Q 038390          117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGT---DIKGLLLSIVLL------------------SGIVQLNLKGCK  175 (228)
Q Consensus       117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~---~i~~lp~~~~~l------------------~~L~~L~l~~~~  175 (228)
                      ++|+.|++++|..+..+|+.      |+.|++.++   .+..+|.++..|                  .+|++|++.+|.
T Consensus        94 ~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~  167 (426)
T PRK15386         94 EGLEKLTVCHCPEISGLPES------VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS  167 (426)
T ss_pred             hhhhheEccCcccccccccc------cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCC
Confidence            46888888888777777753      555556554   355667655444                  368888888876


Q ss_pred             CCCccCcccCCCCCCCEEeccCCC------CCcccchhhhcCccccceeccccCC
Q 038390          176 NIECLPNFISALKFPSTLNFSGLL------KFRLFPEIMGCIEHLLALRLLGTAI  224 (228)
Q Consensus       176 ~~~~lp~~~~~l~~L~~L~l~~c~------~l~~lp~~~~~l~~L~~L~l~~n~l  224 (228)
                      .+ .+|..+.  .+|+.|.++.+.      ....+|+.+ .+.....+.++.+.|
T Consensus       168 ~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f  218 (426)
T PRK15386        168 NI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVF  218 (426)
T ss_pred             cc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCHHHh
Confidence            43 3454333  478888876632      122566555 444333344444333

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.19  E-value=7.1e-07  Score=76.87  Aligned_cols=109  Identities=26%  Similarity=0.246  Sum_probs=82.5

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      +..+++|..|++.+| .++.+...+..+.+|++|++++|.|+.+. .+..++.|+.|++.+|. +..+.. +..+++|+.
T Consensus        91 l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~  166 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDISG-LESLKSLKL  166 (414)
T ss_pred             cccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhccC-Cccchhhhc
Confidence            667788888888887 67777666778888999999999888775 35667778888888863 555543 556888888


Q ss_pred             EeccCCCCCcccchh-hhcCccccceeccccCCCC
Q 038390          193 LNFSGLLKFRLFPEI-MGCIEHLLALRLLGTAIRG  226 (228)
Q Consensus       193 L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~n~l~~  226 (228)
                      +++++ +.+..+... +..+.+++.+++.+|.+..
T Consensus       167 l~l~~-n~i~~ie~~~~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  167 LDLSY-NRIVDIENDELSELISLEELDLGGNSIRE  200 (414)
T ss_pred             ccCCc-chhhhhhhhhhhhccchHHHhccCCchhc
Confidence            88888 566666543 5677888888888887764

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.16  E-value=3.6e-07  Score=75.88  Aligned_cols=97  Identities=20%  Similarity=0.186  Sum_probs=80.2

Q ss_pred             CCcccchhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCcccc-h
Q 038390          129 KLKKFPEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFP-E  206 (228)
Q Consensus       129 ~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp-~  206 (228)
                      .+.++|..+.  ..-.+++|..|.|+.+|+ .|+.+++|+.|||++|.....-|..|.++.+|-.|.+.++++++.+| .
T Consensus        57 GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~  134 (498)
T KOG4237|consen   57 GLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG  134 (498)
T ss_pred             CcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence            4666776543  356789999999999976 58999999999999975433348889999999999998889999999 5


Q ss_pred             hhhcCccccceeccccCCCCC
Q 038390          207 IMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       207 ~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      .|+.|.+|+.|.+.-|.+.-+
T Consensus       135 ~F~gL~slqrLllNan~i~Ci  155 (498)
T KOG4237|consen  135 AFGGLSSLQRLLLNANHINCI  155 (498)
T ss_pred             HhhhHHHHHHHhcChhhhcch
Confidence            789999999999998877643

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.05  E-value=1e-06  Score=75.84  Aligned_cols=108  Identities=23%  Similarity=0.197  Sum_probs=88.1

Q ss_pred             ccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEe
Q 038390          115 FMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLN  194 (228)
Q Consensus       115 ~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~  194 (228)
                      .+..++.++++.| .++.+-..++.+++|+.|++.+|.|..+...+..+.+|++|++++| .++.+.. +..++.|+.|+
T Consensus        70 ~l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~  146 (414)
T KOG0531|consen   70 SLTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELN  146 (414)
T ss_pred             HhHhHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhhe
Confidence            5667777788877 5666555578899999999999999988866889999999999996 4666643 67788899999


Q ss_pred             ccCCCCCcccchhhhcCccccceeccccCCCCC
Q 038390          195 FSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       195 l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      +++ |.+..++. +..++.|+.+++++|.++.+
T Consensus       147 l~~-N~i~~~~~-~~~l~~L~~l~l~~n~i~~i  177 (414)
T KOG0531|consen  147 LSG-NLISDISG-LESLKSLKLLDLSYNRIVDI  177 (414)
T ss_pred             ecc-CcchhccC-CccchhhhcccCCcchhhhh
Confidence            999 77877754 45589999999999998754

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=4.4e-06  Score=70.25  Aligned_cols=109  Identities=20%  Similarity=0.223  Sum_probs=75.2

Q ss_pred             ccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccc--hhcCCCCCCcEEeccCCCCCCcc--Ccc-----cC
Q 038390          115 FMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLL--LSIVLLSGIVQLNLKGCKNIECL--PNF-----IS  185 (228)
Q Consensus       115 ~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~~l--p~~-----~~  185 (228)
                      .+|+|+.|+|.+|..+........-+..|++|||++|.+-..+  ...+.++.|+.|+++.|. +.++  |+.     -.
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~  298 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTH  298 (505)
T ss_pred             hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhc
Confidence            4455555555555322222222334567888999998877666  467899999999999864 4443  432     24


Q ss_pred             CCCCCCEEeccCCCCCcccc--hhhhcCccccceeccccCCC
Q 038390          186 ALKFPSTLNFSGLLKFRLFP--EIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       186 ~l~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~  225 (228)
                      .+++|++|++.. |.+..++  ..+..+++|+.|.+..|.+.
T Consensus       299 ~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  299 TFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccceeeeccc-Cccccccccchhhccchhhhhhccccccc
Confidence            678999999999 6776666  35677889999998888775

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.00  E-value=5e-06  Score=75.56  Aligned_cols=109  Identities=25%  Similarity=0.248  Sum_probs=79.0

Q ss_pred             cccCCccEEEccCCCCC-cccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccC--cccCCCCCC
Q 038390          114 IFMKSPKTLILSGCSKL-KKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLP--NFISALKFP  190 (228)
Q Consensus       114 ~~l~~L~~L~ls~~~~l-~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L  190 (228)
                      ..||+|+.|.++|=... ..+-....+.++|..||++++.++.+ .++++|++|+.|.+.+-. +....  ..+.+|++|
T Consensus       145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L  222 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKL  222 (699)
T ss_pred             hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCC-CCchhhHHHHhcccCC
Confidence            35789999999874221 33445567889999999999999888 689999999999888743 22222  246789999


Q ss_pred             CEEeccCCCCCcccc-------hhhhcCccccceeccccCCC
Q 038390          191 STLNFSGLLKFRLFP-------EIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp-------~~~~~l~~L~~L~l~~n~l~  225 (228)
                      +.||+|. .....-+       +.-..|+.|+.||.|++.+.
T Consensus       223 ~vLDIS~-~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  223 RVLDISR-DKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             Ceeeccc-cccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            9999987 3333222       11235889999999998765

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.99  E-value=8.1e-07  Score=63.66  Aligned_cols=106  Identities=20%  Similarity=0.195  Sum_probs=72.2

Q ss_pred             cEEEccCCCCCcccchhh---cCCCCcceEEccCCcccccchhcCCC-CCCcEEeccCCCCCCccCcccCCCCCCCEEec
Q 038390          120 KTLILSGCSKLKKFPEIV---GNMKFLRQLLLDGTDIKGLLLSIVLL-SGIVQLNLKGCKNIECLPNFISALKFPSTLNF  195 (228)
Q Consensus       120 ~~L~ls~~~~l~~~p~~~---~~l~~L~~L~l~~~~i~~lp~~~~~l-~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l  195 (228)
                      ..++|+.| .+..+++..   .....|+..++++|.++.+|+.+... +.++.|++.+| .+.++|.++..++.|+.|++
T Consensus        30 h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   30 HFLDLSSC-QLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             hhcccccc-hhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccc
Confidence            44566666 555555443   33445666677777777777766443 46777777774 46777777777777787877


Q ss_pred             cCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          196 SGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       196 ~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +. |.+..+|..+..|.+|-.|+..+|.+.+||
T Consensus       108 ~~-N~l~~~p~vi~~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  108 RF-NPLNAEPRVIAPLIKLDMLDSPENARAEID  139 (177)
T ss_pred             cc-CccccchHHHHHHHhHHHhcCCCCccccCc
Confidence            77 667777777767777777777777776665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.96  E-value=5.1e-07  Score=80.24  Aligned_cols=104  Identities=16%  Similarity=0.142  Sum_probs=86.1

Q ss_pred             CCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcc-cCCCCCCCEEec
Q 038390          117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNF-ISALKFPSTLNF  195 (228)
Q Consensus       117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l  195 (228)
                      ..|.+.+.++| .+..+.+.+.-++.++.|||+.|.+..+. .+..++.|+.||++.| .++.+|.. ...++ |+.|.+
T Consensus       164 n~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  164 NKLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hhHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeee
Confidence            35677788877 68888888888999999999999998887 6888999999999995 57888862 33444 999999


Q ss_pred             cCCCCCcccchhhhcCccccceeccccCCCC
Q 038390          196 SGLLKFRLFPEIMGCIEHLLALRLLGTAIRG  226 (228)
Q Consensus       196 ~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~  226 (228)
                      ++ |.++.+- .+.+|++|+.||++.|-|.+
T Consensus       240 rn-N~l~tL~-gie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  240 RN-NALTTLR-GIENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             cc-cHHHhhh-hHHhhhhhhccchhHhhhhc
Confidence            99 7787774 57899999999999997763

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.73  E-value=9.9e-06  Score=66.36  Aligned_cols=41  Identities=15%  Similarity=0.211  Sum_probs=23.3

Q ss_pred             cCCCCCCCEEeccCCCCCc-----ccchhhhcCccccceeccccCCC
Q 038390          184 ISALKFPSTLNFSGLLKFR-----LFPEIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       184 ~~~l~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~n~l~  225 (228)
                      +..+++|+.|||++ |.++     .+...+..+++|+.|++++|.++
T Consensus       209 l~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeecccccccc
Confidence            44566666666666 3332     23344555666666666666654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.67  E-value=2.5e-05  Score=71.15  Aligned_cols=108  Identities=21%  Similarity=0.308  Sum_probs=80.2

Q ss_pred             ccCCccEEEccCCCCC-cccchhhcC-CCCcceEEccCCccc--ccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCC
Q 038390          115 FMKSPKTLILSGCSKL-KKFPEIVGN-MKFLRQLLLDGTDIK--GLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFP  190 (228)
Q Consensus       115 ~l~~L~~L~ls~~~~l-~~~p~~~~~-l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L  190 (228)
                      .-.+|+.||++|...+ ...|..++. +++|+.|.+++-.+.  +.-.-..++++|..||++++ +++.+ ..+++|++|
T Consensus       120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknL  197 (699)
T KOG3665|consen  120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNL  197 (699)
T ss_pred             HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccH
Confidence            3457899999987554 334555554 699999999986543  33445578899999999995 56666 678999999


Q ss_pred             CEEeccCCCCCcccc--hhhhcCccccceeccccCCC
Q 038390          191 STLNFSGLLKFRLFP--EIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~  225 (228)
                      +.|.+.+ -.+....  ..+-+|++|+.||+|.....
T Consensus       198 q~L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  198 QVLSMRN-LEFESYQDLIDLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             HHHhccC-CCCCchhhHHHHhcccCCCeeeccccccc
Confidence            9999987 4455433  35678999999999987543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=8.9e-06  Score=65.57  Aligned_cols=108  Identities=20%  Similarity=0.197  Sum_probs=61.0

Q ss_pred             ccccCCccEEEccCCCCCccc-chhhcCC-CCcceEEccCCc----ccccchhcCCCCCCcEEeccCCCCCCc-cCcccC
Q 038390          113 LIFMKSPKTLILSGCSKLKKF-PEIVGNM-KFLRQLLLDGTD----IKGLLLSIVLLSGIVQLNLKGCKNIEC-LPNFIS  185 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l-~~L~~L~l~~~~----i~~lp~~~~~l~~L~~L~l~~~~~~~~-lp~~~~  185 (228)
                      +.+++.|..|++++|...... ...+... ++|+.|+++|+.    ...+..-...+++|..|||++|..++. ....+.
T Consensus       256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~  335 (419)
T KOG2120|consen  256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  335 (419)
T ss_pred             HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence            455556666666666333221 1111111 345556666551    112222335677888888888765543 233466


Q ss_pred             CCCCCCEEeccCCCCCcccch---hhhcCccccceecccc
Q 038390          186 ALKFPSTLNFSGLLKFRLFPE---IMGCIEHLLALRLLGT  222 (228)
Q Consensus       186 ~l~~L~~L~l~~c~~l~~lp~---~~~~l~~L~~L~l~~n  222 (228)
                      +++-|++|.++.|..+.  |+   .++..++|.+|++.++
T Consensus       336 kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  336 KFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hcchheeeehhhhcCCC--hHHeeeeccCcceEEEEeccc
Confidence            77888888888876542  32   3567788888887765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.53  E-value=0.00015  Score=55.34  Aligned_cols=101  Identities=17%  Similarity=0.169  Sum_probs=71.0

Q ss_pred             CCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCC-CCCCcEEeccCCCCCCccCc--ccCCCCCCCEE
Q 038390          117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVL-LSGIVQLNLKGCKNIECLPN--FISALKFPSTL  193 (228)
Q Consensus       117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~-l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L  193 (228)
                      .....+||++| .+..++. +..++.|..|.+.+|+|..+.+.++. +++|..|.|.+|+ +.++-+  .+..|+.|++|
T Consensus        42 d~~d~iDLtdN-dl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDN-DLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceeccccc-chhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCcccee
Confidence            45677899988 5555544 56688899999999999988666654 4678999998864 444322  25677888999


Q ss_pred             eccCCCCCcccch----hhhcCccccceeccc
Q 038390          194 NFSGLLKFRLFPE----IMGCIEHLLALRLLG  221 (228)
Q Consensus       194 ~l~~c~~l~~lp~----~~~~l~~L~~L~l~~  221 (228)
                      .+-+ |....-+.    .+..+++|+.||.++
T Consensus       119 tll~-Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  119 TLLG-NPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eecC-CchhcccCceeEEEEecCcceEeehhh
Confidence            8888 44443332    356788888888764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.49  E-value=0.00016  Score=55.28  Aligned_cols=83  Identities=22%  Similarity=0.261  Sum_probs=60.8

Q ss_pred             ccccCCccEEEccCCCCCcccchhhc-CCCCcceEEccCCcccccch--hcCCCCCCcEEeccCCCCCCccCc----ccC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVG-NMKFLRQLLLDGTDIKGLLL--SIVLLSGIVQLNLKGCKNIECLPN----FIS  185 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~-~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~----~~~  185 (228)
                      +..++.|.+|.++.| .+..+.+.++ -+++|..|.|.+|.|.++.+  .+..++.|++|.+-+|+ ....+.    -+.
T Consensus        60 lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~  137 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLY  137 (233)
T ss_pred             CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEE
Confidence            778889999999988 5666644444 45679999999998876632  35677899999998865 333322    256


Q ss_pred             CCCCCCEEeccC
Q 038390          186 ALKFPSTLNFSG  197 (228)
Q Consensus       186 ~l~~L~~L~l~~  197 (228)
                      .+++|++||..+
T Consensus       138 klp~l~~LDF~k  149 (233)
T KOG1644|consen  138 KLPSLRTLDFQK  149 (233)
T ss_pred             ecCcceEeehhh
Confidence            788999999876

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.43  E-value=8.9e-05  Score=59.94  Aligned_cols=56  Identities=23%  Similarity=0.290  Sum_probs=23.3

Q ss_pred             CCccEEEccCCCCCcc---cchhhcCCCCcceEEccCCcccccchhc-CCCCCCcEEeccC
Q 038390          117 KSPKTLILSGCSKLKK---FPEIVGNMKFLRQLLLDGTDIKGLLLSI-VLLSGIVQLNLKG  173 (228)
Q Consensus       117 ~~L~~L~ls~~~~l~~---~p~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~  173 (228)
                      +.++.|||.+| .+..   +...+.+|+.|+.|+++.|.+.....+. -.+.+|+.|-|.+
T Consensus        71 ~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg  130 (418)
T KOG2982|consen   71 TDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG  130 (418)
T ss_pred             hhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC
Confidence            34455555554 2222   2233444555555555555433221111 1233455555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=1.7e-05  Score=64.03  Aligned_cols=109  Identities=18%  Similarity=0.112  Sum_probs=78.0

Q ss_pred             ccccCCccEEEccCCCCCcccc--hhhcCCCCcceEEccCCcccc-----cchhcCCCCCCcEEeccCCCCC---CccCc
Q 038390          113 LIFMKSPKTLILSGCSKLKKFP--EIVGNMKFLRQLLLDGTDIKG-----LLLSIVLLSGIVQLNLKGCKNI---ECLPN  182 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p--~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~---~~lp~  182 (228)
                      +..=.+|+.||+++|+.+.+..  -.+.+++.|..|++++|.+..     +-.+++  .+|..|+++||...   ..+.-
T Consensus       230 iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~t  307 (419)
T KOG2120|consen  230 IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLST  307 (419)
T ss_pred             HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHH
Confidence            5566778999999998776643  346788899999999985541     122222  47888899887531   11222


Q ss_pred             ccCCCCCCCEEeccCCCCCcc-cchhhhcCccccceeccccC
Q 038390          183 FISALKFPSTLNFSGLLKFRL-FPEIMGCIEHLLALRLLGTA  223 (228)
Q Consensus       183 ~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~n~  223 (228)
                      -...+++|.+|||++|..++. .-..+-.++.|++|.++.|.
T Consensus       308 L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  308 LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             HHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence            235789999999999988874 34567788999999999885

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.06  E-value=0.00055  Score=54.21  Aligned_cols=100  Identities=18%  Similarity=0.175  Sum_probs=61.6

Q ss_pred             cCCccEEEccCCCCCcccchhhcCCCCcceEEccCC--ccc-ccchhcCCCCCCcEEeccCCCCCCc---cCcccCCCCC
Q 038390          116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGT--DIK-GLLLSIVLLSGIVQLNLKGCKNIEC---LPNFISALKF  189 (228)
Q Consensus       116 l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~--~i~-~lp~~~~~l~~L~~L~l~~~~~~~~---lp~~~~~l~~  189 (228)
                      +..|+.|.+.++ .+..+.. +..|++|++|.++.|  ++. .++.....+++|++|++++|+ ++.   +++ ...+.+
T Consensus        42 ~~~le~ls~~n~-gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~p-l~~l~n  117 (260)
T KOG2739|consen   42 FVELELLSVINV-GLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRP-LKELEN  117 (260)
T ss_pred             ccchhhhhhhcc-ceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccch-hhhhcc
Confidence            344555555544 2222221 345778999999998  443 555556667899999999864 332   222 456777


Q ss_pred             CCEEeccCCCCCcccc----hhhhcCccccceecc
Q 038390          190 PSTLNFSGLLKFRLFP----EIMGCIEHLLALRLL  220 (228)
Q Consensus       190 L~~L~l~~c~~l~~lp----~~~~~l~~L~~L~l~  220 (228)
                      |..|++.+|.... +-    ..+..+++|++|+--
T Consensus       118 L~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  118 LKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhhhhcccCCccc-cccHHHHHHHHhhhhcccccc
Confidence            8888888876443 22    235667777777643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.00  E-value=0.00062  Score=56.07  Aligned_cols=112  Identities=17%  Similarity=0.137  Sum_probs=53.7

Q ss_pred             ccccCCccEEEccCCCCC----cccchhhcCCCCcceEEccCCccc-----ccchhcCCCCCCcEEeccCCCCCCc----
Q 038390          113 LIFMKSPKTLILSGCSKL----KKFPEIVGNMKFLRQLLLDGTDIK-----GLLLSIVLLSGIVQLNLKGCKNIEC----  179 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l----~~~p~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~----  179 (228)
                      +...+.|+.+.+..|..-    ..+...+..+++|+.|||..|.++     .+...+..+++|+.|++++|..-..    
T Consensus       181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a  260 (382)
T KOG1909|consen  181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA  260 (382)
T ss_pred             HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence            334455555555555221    112334455566666666666443     2334455555666666666542111    


Q ss_pred             cCccc-CCCCCCCEEeccCCCCCc----ccchhhhcCccccceeccccCC
Q 038390          180 LPNFI-SALKFPSTLNFSGLLKFR----LFPEIMGCIEHLLALRLLGTAI  224 (228)
Q Consensus       180 lp~~~-~~l~~L~~L~l~~c~~l~----~lp~~~~~l~~L~~L~l~~n~l  224 (228)
                      +-..+ ...++|+++.+.+|..-.    .+-..+...+.|..|+|++|.+
T Consensus       261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            11111 124556666666632211    1223344566777777777766

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=96.93  E-value=0.00014  Score=49.78  Aligned_cols=41  Identities=24%  Similarity=0.345  Sum_probs=35.7

Q ss_pred             CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHH
Q 038390            1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVE   41 (228)
Q Consensus         1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~   41 (228)
                      |+.+...+.++|++|+..|+++|++|..|.||..|+....+
T Consensus        36 g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~   76 (102)
T PF13676_consen   36 GEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK   76 (102)
T ss_dssp             TS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH
Confidence            56677889999999999999999999999999998877754

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.84  E-value=0.00069  Score=32.68  Aligned_cols=18  Identities=28%  Similarity=0.397  Sum_probs=8.2

Q ss_pred             cceEEccCCcccccchhc
Q 038390          143 LRQLLLDGTDIKGLLLSI  160 (228)
Q Consensus       143 L~~L~l~~~~i~~lp~~~  160 (228)
                      |++|++++|.++.+|+++
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            444444444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.73  E-value=0.00057  Score=30.76  Aligned_cols=16  Identities=31%  Similarity=0.503  Sum_probs=8.5

Q ss_pred             cccceeccccCCCCCC
Q 038390          213 HLLALRLLGTAIRGLP  228 (228)
Q Consensus       213 ~L~~L~l~~n~l~~lP  228 (228)
                      +|+.|++++|.|+++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5677777777777666

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.50  E-value=0.00028  Score=56.61  Aligned_cols=80  Identities=19%  Similarity=0.066  Sum_probs=61.7

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccch--hcCCCCCCcEEeccCCCCCCccCcc-----cC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLL--SIVLLSGIVQLNLKGCKNIECLPNF-----IS  185 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~-----~~  185 (228)
                      ...++.|++|.||-| .+..+.. +..++.|++|+|..|.|..+.+  -+.++++|+.|.|..|...+.-+..     +.
T Consensus        37 c~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR  114 (388)
T KOG2123|consen   37 CEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR  114 (388)
T ss_pred             HHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence            567888999999998 5666544 6789999999999999987754  3688999999999998876654432     33


Q ss_pred             CCCCCCEEe
Q 038390          186 ALKFPSTLN  194 (228)
Q Consensus       186 ~l~~L~~L~  194 (228)
                      .|++|+.||
T Consensus       115 ~LPnLkKLD  123 (388)
T KOG2123|consen  115 VLPNLKKLD  123 (388)
T ss_pred             Hcccchhcc
Confidence            567777765

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.45  E-value=0.0031  Score=51.30  Aligned_cols=62  Identities=26%  Similarity=0.223  Sum_probs=32.6

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccc--ccchhcCCCCCCcEEeccCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIK--GLLLSIVLLSGIVQLNLKGC  174 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~  174 (228)
                      +.+||.|++|+++.|+....+...-..+.+|+.|.|.++.+.  .....+..++.++.|.++.|
T Consensus        93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen   93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            557777778888776432222111134567777777776443  33334444544444444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.38  E-value=0.0023  Score=50.80  Aligned_cols=85  Identities=21%  Similarity=0.151  Sum_probs=61.6

Q ss_pred             ccccCCccEEEccCC--CCCcccchhhcCCCCcceEEccCCccccc--chhcCCCCCCcEEeccCCCCCCcc-C-c-ccC
Q 038390          113 LIFMKSPKTLILSGC--SKLKKFPEIVGNMKFLRQLLLDGTDIKGL--LLSIVLLSGIVQLNLKGCKNIECL-P-N-FIS  185 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~--~~l~~~p~~~~~l~~L~~L~l~~~~i~~l--p~~~~~l~~L~~L~l~~~~~~~~l-p-~-~~~  185 (228)
                      +-.|++|+.|.+|.|  +....++.....+++|+++++++|.|..+  -.....+.+|..|++.+|.....- + . -+.
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~  140 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL  140 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence            567789999999999  55666776677789999999999988743  123566778999999988644311 1 1 245


Q ss_pred             CCCCCCEEeccC
Q 038390          186 ALKFPSTLNFSG  197 (228)
Q Consensus       186 ~l~~L~~L~l~~  197 (228)
                      .+++|.+|+-..
T Consensus       141 ll~~L~~LD~~d  152 (260)
T KOG2739|consen  141 LLPSLKYLDGCD  152 (260)
T ss_pred             Hhhhhccccccc
Confidence            567888876554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.23  E-value=0.00032  Score=56.29  Aligned_cols=99  Identities=22%  Similarity=0.261  Sum_probs=72.2

Q ss_pred             cCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCc--ccCCCCCCCEE
Q 038390          116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPN--FISALKFPSTL  193 (228)
Q Consensus       116 l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L  193 (228)
                      +.+.+.|+.-|| .+..+. ....|+.|+.|.|+-|.|+.+. .+..+++|+.|+|..| .+.++-+  -+.++++|+.|
T Consensus        18 l~~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCC-CccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence            556678888888 565543 3578999999999999998885 3788999999999885 3555433  25688889988


Q ss_pred             eccCCCCCcccch-----hhhcCcccccee
Q 038390          194 NFSGLLKFRLFPE-----IMGCIEHLLALR  218 (228)
Q Consensus       194 ~l~~c~~l~~lp~-----~~~~l~~L~~L~  218 (228)
                      =|..|.....-+.     .+.-|++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8877555554443     255678888776

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.12  E-value=0.0024  Score=30.71  Aligned_cols=22  Identities=32%  Similarity=0.428  Sum_probs=17.6

Q ss_pred             CccEEEccCCCCCcccchhhcCC
Q 038390          118 SPKTLILSGCSKLKKFPEIVGNM  140 (228)
Q Consensus       118 ~L~~L~ls~~~~l~~~p~~~~~l  140 (228)
                      +|++||+++| .++.+|+.+++|
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTTT-
T ss_pred             CccEEECCCC-cCEeCChhhcCC
Confidence            5899999999 777999876653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.72  E-value=0.054  Score=38.20  Aligned_cols=101  Identities=7%  Similarity=0.116  Sum_probs=46.0

Q ss_pred             ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~  189 (228)
                      +.++++|+.+.+..  .+..++ ..+..+++|+.+.+..+ +..++. .+.++.+|+.+.+.+  .+..++. .+..+++
T Consensus         8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TT
T ss_pred             HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccccccc
Confidence            45556666666653  344553 34556666777777664 555543 345565677777754  2344433 3445677


Q ss_pred             CCEEeccCCCCCcccch-hhhcCccccceeccc
Q 038390          190 PSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLG  221 (228)
Q Consensus       190 L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~  221 (228)
                      |+.+.+.. + +..++. .+.++ .|+.+.+..
T Consensus        83 l~~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   83 LKNIDIPS-N-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ECEEEETT-T--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccCc-c-ccEEchhhhcCC-CceEEEECC
Confidence            77777654 2 455543 44554 666666554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.36  E-value=0.012  Score=26.33  Aligned_cols=9  Identities=44%  Similarity=0.294  Sum_probs=3.3

Q ss_pred             ccEEEccCC
Q 038390          119 PKTLILSGC  127 (228)
Q Consensus       119 L~~L~ls~~  127 (228)
                      |++|++++|
T Consensus         3 L~~L~l~~n   11 (17)
T PF13504_consen    3 LRTLDLSNN   11 (17)
T ss_dssp             -SEEEETSS
T ss_pred             cCEEECCCC
Confidence            344444444

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.29  E-value=0.012  Score=29.41  Aligned_cols=18  Identities=28%  Similarity=0.486  Sum_probs=13.9

Q ss_pred             CccccceeccccCCCCCC
Q 038390          211 IEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       211 l~~L~~L~l~~n~l~~lP  228 (228)
                      +++|+.|+|++|.|+.+|
T Consensus         1 L~~L~~L~L~~N~l~~lp   18 (26)
T smart00369        1 LPNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCCEEECCCCcCCcCC
Confidence            456788888888888776

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.29  E-value=0.012  Score=29.41  Aligned_cols=18  Identities=28%  Similarity=0.486  Sum_probs=13.9

Q ss_pred             CccccceeccccCCCCCC
Q 038390          211 IEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       211 l~~L~~L~l~~n~l~~lP  228 (228)
                      +++|+.|+|++|.|+.+|
T Consensus         1 L~~L~~L~L~~N~l~~lp   18 (26)
T smart00370        1 LPNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCCEEECCCCcCCcCC
Confidence            456788888888888776

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.22  E-value=0.0058  Score=46.87  Aligned_cols=79  Identities=19%  Similarity=0.197  Sum_probs=35.1

Q ss_pred             ccEEEccCCCCCcccchhhcCCCCcceEEccCCc-ccc-cchhc-CCCCCCcEEeccCCCCCCcc-CcccCCCCCCCEEe
Q 038390          119 PKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTD-IKG-LLLSI-VLLSGIVQLNLKGCKNIECL-PNFISALKFPSTLN  194 (228)
Q Consensus       119 L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~-i~~-lp~~~-~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~  194 (228)
                      ++.+|-+++..-..--+.+..++.++.|.+.+|. +.. --+-+ +-.++|+.|++++|..+++- -..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            4556666552211112334445555555555541 110 00011 12345666666666555443 12344555666665


Q ss_pred             ccC
Q 038390          195 FSG  197 (228)
Q Consensus       195 l~~  197 (228)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.14  E-value=0.0091  Score=51.96  Aligned_cols=35  Identities=34%  Similarity=0.435  Sum_probs=16.5

Q ss_pred             cCCccEEEccCCCCCcc--cchhhcCCCCcceEEccC
Q 038390          116 MKSPKTLILSGCSKLKK--FPEIVGNMKFLRQLLLDG  150 (228)
Q Consensus       116 l~~L~~L~ls~~~~l~~--~p~~~~~l~~L~~L~l~~  150 (228)
                      ++.|+.|.+.+|..+..  +-.....++.|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            44555555555544433  223344445555555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.04  E-value=0.035  Score=48.32  Aligned_cols=108  Identities=20%  Similarity=0.264  Sum_probs=69.7

Q ss_pred             ccccCCccEEEccCC-CCCcccc----hhhcCCCCcceEEccCCc-cccc--chhcCCCCCCcEEeccCCCCCCc--cCc
Q 038390          113 LIFMKSPKTLILSGC-SKLKKFP----EIVGNMKFLRQLLLDGTD-IKGL--LLSIVLLSGIVQLNLKGCKNIEC--LPN  182 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~-~~l~~~p----~~~~~l~~L~~L~l~~~~-i~~l--p~~~~~l~~L~~L~l~~~~~~~~--lp~  182 (228)
                      ...++.|+.|++++| ......+    .....+.+|+.|+++++. ++..  ..-...+++|+.|.+.+|..++.  +-.
T Consensus       210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~  289 (482)
T KOG1947|consen  210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS  289 (482)
T ss_pred             HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence            667889999999983 2322222    334556889999999886 5533  21123378999999888865332  223


Q ss_pred             ccCCCCCCCEEeccCCCCCcc--cchhhhcCccccceecc
Q 038390          183 FISALKFPSTLNFSGLLKFRL--FPEIMGCIEHLLALRLL  220 (228)
Q Consensus       183 ~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~  220 (228)
                      -...+++|++|++++|..+..  +......+++|+.|.+.
T Consensus       290 i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  290 IAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             HHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence            345678899999999888742  44444556666665543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.52  E-value=0.06  Score=26.75  Aligned_cols=19  Identities=26%  Similarity=0.284  Sum_probs=10.5

Q ss_pred             CCcceEEccCCcccccchh
Q 038390          141 KFLRQLLLDGTDIKGLLLS  159 (228)
Q Consensus       141 ~~L~~L~l~~~~i~~lp~~  159 (228)
                      ++|+.|+|++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4455555555555555543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.52  E-value=0.06  Score=26.75  Aligned_cols=19  Identities=26%  Similarity=0.284  Sum_probs=10.5

Q ss_pred             CCcceEEccCCcccccchh
Q 038390          141 KFLRQLLLDGTDIKGLLLS  159 (228)
Q Consensus       141 ~~L~~L~l~~~~i~~lp~~  159 (228)
                      ++|+.|+|++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4455555555555555543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.44  E-value=0.12  Score=41.77  Aligned_cols=15  Identities=13%  Similarity=0.151  Sum_probs=7.1

Q ss_pred             CCCCcceEEccCCcc
Q 038390          139 NMKFLRQLLLDGTDI  153 (228)
Q Consensus       139 ~l~~L~~L~l~~~~i  153 (228)
                      +|+.|+..+||.|.+
T Consensus        90 kcp~l~~v~LSDNAf  104 (388)
T COG5238          90 KCPRLQKVDLSDNAF  104 (388)
T ss_pred             cCCcceeeecccccc
Confidence            444455555555433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.26  E-value=0.0018  Score=50.85  Aligned_cols=61  Identities=11%  Similarity=-0.076  Sum_probs=30.4

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGC  174 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~  174 (228)
                      ++-++.|..|+++.| .+..+|+.++....++.+++..|..+..|.+.+.++.++++++.++
T Consensus        61 ~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~  121 (326)
T KOG0473|consen   61 FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT  121 (326)
T ss_pred             hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence            334444444555544 4444555555555555555555555555555555555555555443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=93.19  E-value=0.072  Score=45.35  Aligned_cols=110  Identities=17%  Similarity=0.118  Sum_probs=54.3

Q ss_pred             ccccCCccEEEccCCCCCccc--chhhcCCCCcceEEccCCccc---ccchhcCCCCCCcEEeccCCCCCCcc-----Cc
Q 038390          113 LIFMKSPKTLILSGCSKLKKF--PEIVGNMKFLRQLLLDGTDIK---GLLLSIVLLSGIVQLNLKGCKNIECL-----PN  182 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~--p~~~~~l~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~~~~~l-----p~  182 (228)
                      ..+..+|++|.+++|+.+...  ...-.++..|+.+++..+...   ++-.--.+++.|+.|.+++|..+++.     ..
T Consensus       316 g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~  395 (483)
T KOG4341|consen  316 GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS  395 (483)
T ss_pred             hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence            335566777777777655432  112234556666666655322   12222345566666666666544332     22


Q ss_pred             ccCCCCCCCEEeccCCCCCcc-cchhhhcCccccceecccc
Q 038390          183 FISALKFPSTLNFSGLLKFRL-FPEIMGCIEHLLALRLLGT  222 (228)
Q Consensus       183 ~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~n  222 (228)
                      .-..+..|..+.+++|..+.. .-+-+..+++|+.+++-++
T Consensus       396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  396 SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            223445556666666554442 2233444555555555444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.13  E-value=0.0015  Score=51.24  Aligned_cols=85  Identities=18%  Similarity=0.026  Sum_probs=70.3

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      +......+.||++.| .+..+-..+.-++.+..|+++.|.+..+|..++.+..++.+++..| +....|.+++.++.+++
T Consensus        38 i~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKK  115 (326)
T ss_pred             hhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcch
Confidence            677788899999988 4555555567778889999999999999998888888888888774 57889999999999999


Q ss_pred             EeccCCC
Q 038390          193 LNFSGLL  199 (228)
Q Consensus       193 L~l~~c~  199 (228)
                      +++-++.
T Consensus       116 ~e~k~~~  122 (326)
T KOG0473|consen  116 NEQKKTE  122 (326)
T ss_pred             hhhccCc
Confidence            9988844

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=92.99  E-value=0.097  Score=42.35  Aligned_cols=113  Identities=14%  Similarity=0.092  Sum_probs=75.3

Q ss_pred             ccccCCccEEEccCCCCCcc----cchhhcCCCCcceEEccCCccc----ccc-------hhcCCCCCCcEEeccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKK----FPEIVGNMKFLRQLLLDGTDIK----GLL-------LSIVLLSGIVQLNLKGCKNI  177 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~----~p~~~~~l~~L~~L~l~~~~i~----~lp-------~~~~~l~~L~~L~l~~~~~~  177 (228)
                      +.-+..++.++||||..-+.    +-..+.+-.+|+..+++.-...    ++|       +.+-.++.|+..+|+.|-.-
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            34477889999999954322    3445566778888888764221    333       34556788999999987655


Q ss_pred             CccCcc----cCCCCCCCEEeccCCCCCcccch-hhh-------------cCccccceeccccCCCC
Q 038390          178 ECLPNF----ISALKFPSTLNFSGLLKFRLFPE-IMG-------------CIEHLLALRLLGTAIRG  226 (228)
Q Consensus       178 ~~lp~~----~~~l~~L~~L~l~~c~~l~~lp~-~~~-------------~l~~L~~L~l~~n~l~~  226 (228)
                      .+.|+.    +.+-+.|.+|.+++ +.++.+.. -++             +-+.|+......|.+..
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~N-nGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen  171 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNN-NGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN  171 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeec-CCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence            555543    45668899999988 56666542 233             34678888888887764

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.28  E-value=0.66  Score=32.51  Aligned_cols=94  Identities=12%  Similarity=0.126  Sum_probs=50.7

Q ss_pred             ccccCCccEEEccCCCCCcccch-hhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~  189 (228)
                      +..+++|+.+.+.++  +..++. .+.++.+++.+.+.. .+..++. .+..+++|+.+++..+  +..++. .+.++ +
T Consensus        31 F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~  104 (129)
T PF13306_consen   31 FSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-N  104 (129)
T ss_dssp             TTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T
T ss_pred             ccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccccccCcc--ccEEchhhhcCC-C
Confidence            667778999999864  666654 567777899999976 5555654 4566899999999753  555644 46666 8


Q ss_pred             CCEEeccCCCCCcccc-hhhhcCccc
Q 038390          190 PSTLNFSGLLKFRLFP-EIMGCIEHL  214 (228)
Q Consensus       190 L~~L~l~~c~~l~~lp-~~~~~l~~L  214 (228)
                      |+.+.+..  .+..++ ..+.++++|
T Consensus       105 l~~i~~~~--~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  105 LKEINIPS--NITKIEENAFKNCTKL  128 (129)
T ss_dssp             --EEE-TT--B-SS----GGG-----
T ss_pred             ceEEEECC--CccEECCccccccccC
Confidence            88888764  345555 345666555

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=92.08  E-value=0.085  Score=26.37  Aligned_cols=17  Identities=24%  Similarity=0.403  Sum_probs=12.3

Q ss_pred             ccccceeccccCCCCCC
Q 038390          212 EHLLALRLLGTAIRGLP  228 (228)
Q Consensus       212 ~~L~~L~l~~n~l~~lP  228 (228)
                      ++|+.|++++|+++++|
T Consensus         2 ~~L~~L~vs~N~Lt~LP   18 (26)
T smart00364        2 PSLKELNVSNNQLTSLP   18 (26)
T ss_pred             cccceeecCCCccccCc
Confidence            35677777777777776

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.25  E-value=0.046  Score=42.07  Aligned_cols=78  Identities=18%  Similarity=0.129  Sum_probs=33.8

Q ss_pred             cceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCccC-ccc-CCCCCCCEEeccCCCCCcccc-hhhhcCcccccee
Q 038390          143 LRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECLP-NFI-SALKFPSTLNFSGLLKFRLFP-EIMGCIEHLLALR  218 (228)
Q Consensus       143 L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp-~~~-~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~  218 (228)
                      ++.++.+++.|-.. -..+.+++.++.|.+.+|..+.+.- ..+ +-.++|+.|++++|..+++.- ..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            34444444443322 1234445555555555554433210 001 123455555555555555432 3444455555544


Q ss_pred             cc
Q 038390          219 LL  220 (228)
Q Consensus       219 l~  220 (228)
                      +.
T Consensus       183 l~  184 (221)
T KOG3864|consen  183 LY  184 (221)
T ss_pred             hc
Confidence            43

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=89.67  E-value=0.16  Score=43.40  Aligned_cols=120  Identities=17%  Similarity=0.128  Sum_probs=78.0

Q ss_pred             cccccccccc--cccc-------ccccCCccEEEccCCCCCcc--cchhhcCCCCcceEEccCCc-cc-----ccchhcC
Q 038390           99 VHSRTSSHPF--QNLR-------LIFMKSPKTLILSGCSKLKK--FPEIVGNMKFLRQLLLDGTD-IK-----GLLLSIV  161 (228)
Q Consensus        99 ~~~l~~l~~~--~nl~-------~~~l~~L~~L~ls~~~~l~~--~p~~~~~l~~L~~L~l~~~~-i~-----~lp~~~~  161 (228)
                      |++|+.++.+  +++.       -.+.++|+.+++.+|.....  +.....+++.|+.|.++.+. ++     .+...-.
T Consensus       319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c  398 (483)
T KOG4341|consen  319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC  398 (483)
T ss_pred             CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence            6666654443  3222       34677899999998854422  33444577889999998772 22     1233335


Q ss_pred             CCCCCcEEeccCCCCCCcc-CcccCCCCCCCEEeccCCCCCcccc--hhhhcCcccccee
Q 038390          162 LLSGIVQLNLKGCKNIECL-PNFISALKFPSTLNFSGLLKFRLFP--EIMGCIEHLLALR  218 (228)
Q Consensus       162 ~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~  218 (228)
                      .+..|..+.|++|+.+++- -.....+++|+.+++.+|..+++-|  ....+++++++.-
T Consensus       399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence            5778999999998876542 3456788899999999998876543  3345566665543

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=89.03  E-value=0.23  Score=24.88  Aligned_cols=17  Identities=24%  Similarity=0.358  Sum_probs=11.4

Q ss_pred             CccccceeccccCCCCC
Q 038390          211 IEHLLALRLLGTAIRGL  227 (228)
Q Consensus       211 l~~L~~L~l~~n~l~~l  227 (228)
                      +++|+.|++++|.|+.+
T Consensus         1 L~~L~~L~L~~NkI~~I   17 (26)
T smart00365        1 LTNLEELDLSQNKIKKI   17 (26)
T ss_pred             CCccCEEECCCCcccee
Confidence            35677777777777643

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=86.76  E-value=0.64  Score=33.21  Aligned_cols=42  Identities=19%  Similarity=0.229  Sum_probs=30.4

Q ss_pred             CCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHHhcC
Q 038390            3 SISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKN   44 (228)
Q Consensus         3 ~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c~~   44 (228)
                      -|...+.++|..|.+.||+.+++=+.|.|.=.|+..-++..+
T Consensus        59 ~ik~~I~~~i~~s~~~IVLig~~T~~s~wV~~EI~~A~~~~~  100 (130)
T PF08937_consen   59 YIKRKIRERIKNSSVTIVLIGPNTAKSKWVNWEIEYALKKGK  100 (130)
T ss_dssp             THHHHHHHHHHTEEEEEEE--TT----HHHHHHHHHHTTT--
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCCcccCcHHHHHHHHHHHCCC
Confidence            567788999999999999999999999999999998877555

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=83.70  E-value=0.89  Score=22.44  Aligned_cols=15  Identities=20%  Similarity=0.213  Sum_probs=10.0

Q ss_pred             CCCCEEeccCCCCCc
Q 038390          188 KFPSTLNFSGLLKFR  202 (228)
Q Consensus       188 ~~L~~L~l~~c~~l~  202 (228)
                      ++|++|++++|..++
T Consensus         2 ~~L~~L~l~~C~~it   16 (26)
T smart00367        2 PNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCEeCCCCCCCcC
Confidence            567777777776554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=81.92  E-value=0.58  Score=22.54  Aligned_cols=14  Identities=29%  Similarity=0.301  Sum_probs=7.9

Q ss_pred             ccccceeccccCCC
Q 038390          212 EHLLALRLLGTAIR  225 (228)
Q Consensus       212 ~~L~~L~l~~n~l~  225 (228)
                      ++|++|+|++|.|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            56677777777654

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	228
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		2e-04

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 1  GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWK 43
          G   SP     IE SR +V+V   N A+S+WCLDELV I++++
Sbjct: 49 GQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFE 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	228
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	3e-23
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	5e-22
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	4e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-08

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score = 91.1 bits (227), Expect = 3e-23
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 14/78 (17%)

Query: 1   GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKNT--------------S 46
           G   SP     IE SR +V+V   N A+S+WCLDELV I++++                +
Sbjct: 49  GQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPN 108

Query: 47  LVRKHIGSFQEAIVNHEE 64
            VR   G   E    H  
Sbjct: 109 HVRWQTGVLAEQFKKHAS 126

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score = 88.9 bits (221), Expect = 5e-22
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 15/84 (17%)

Query: 1   GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKNT--------------- 45
           G  I P   + I++S+I V +     A S WCL EL +IV  +                 
Sbjct: 76  GKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDP 135

Query: 46  SLVRKHIGSFQEAIVNHEEVLKGE 69
           S VR   G +++A   H     G+
Sbjct: 136 SDVRHQTGCYKKAFRKHANKFDGQ 159

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score = 79.6 bits (197), Expect = 4e-19
 Identities = 10/78 (12%), Positives = 25/78 (32%), Gaps = 14/78 (17%)

Query: 1   GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKNT--------------S 46
           G S+  +  K +  SR  ++V   +     W   EL  + + +++               
Sbjct: 60  GDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKD 119

Query: 47  LVRKHIGSFQEAIVNHEE 64
            V     +  + +  +  
Sbjct: 120 EVASFSPTMADKLAFNTS 137

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 11/118 (9%)

Query: 120 KTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIEC 179
             L L     L +FP+    +  L+ + +D   +  L  ++   +G+  L L     +  
Sbjct: 84  VALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRA 141

Query: 180 LPNFISALKFPSTLNFSGLLKFRLFPEIMGCIE---------HLLALRLLGTAIRGLP 228
           LP  I++L     L+     +    PE +   +         +L +LRL  T IR LP
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP 199

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.9 bits (138), Expect = 8e-10
 Identities = 12/115 (10%), Positives = 35/115 (30%), Gaps = 7/115 (6%)

Query: 116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCK 175
               + L   G + L+ + +++   +       +         +        Q+  +  +
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNP----QIETRTGR 66

Query: 176 NIECLPNFISALKFPS--TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228
            ++   + +     P    L     +    FP+    + HL  + +    +  LP
Sbjct: 67  ALKATADLLEDATQPGRVALELRS-VPLPQFPDQAFRLSHLQHMTIDAAGLMELP 120

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCK 175
           + + ++L L   + ++  P  + N++ L+ L +  + +  L  +I  L  + +L+L+GC 
Sbjct: 182 LVNLQSLRLE-WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240

Query: 176 NIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRL 219
            +   P           L           P  +  +  L  L L
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 120 KTLILSGCSKLKKFPEIVGNMKFLRQL-LLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIE 178
           + L L GC+ L+ +P I G    L++L L D +++  L L I  L+ + +L+L+GC N+ 
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 179 CLPNFISALK 188
            LP+ I+ L 
Sbjct: 292 RLPSLIAQLP 301

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 20/117 (17%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 120 KTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIEC 179
           + + +     L + P+ +     L  L L    ++ L  SI  L+ + +L+++ C  +  
Sbjct: 107 QHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTE 165

Query: 180 LPNFISALKFPSTL-NFSGLLKFRL-------FPEIMGCIEHLLALRLLGTAIRGLP 228
           LP  +++            L   RL        P  +  +++L +L++  + +  L 
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG 222

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	228
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	99.93
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.73
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.63
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.6
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.6
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.59
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.59
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.59
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.57
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.57
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.57
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.57
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.56
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.55
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.55
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.55
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.55
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.55
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.54
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.54
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.53
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.53
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.53
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.53
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.52
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.52
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.52
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.51
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.5
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.5
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.5
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.5
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.49
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.49
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.49
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.49
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.49
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.49
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.49
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.48
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.48
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.47
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.47
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.47
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.46
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.46
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.46
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.46
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.46
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.45
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.45
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.45
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.44
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.44
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.44
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.43
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.43
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.43
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.42
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.42
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.41
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.41
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.41
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.41
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.4
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.4
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.4
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.4
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.39
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.39
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.39
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.37
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.37
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.37
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	99.37
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.29
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.27
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.26
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.26
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.21
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.21
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.2
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.1
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.03
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.95
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	98.92
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.92
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.89
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.81
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.8
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.71
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.67
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	98.66
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.65
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	98.65
2js7_A	160	Myeloid differentiation primary response protein M	98.61
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	98.56
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.52
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.51
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.43
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.4
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.38
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.34
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.33
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.26
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.22
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.14
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.98
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.87
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.6
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.24
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.88
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.69
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.69
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.41
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.38
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.31
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.2
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.98
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.28
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	87.19

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=99.93  E-value=1.2e-26  Score=173.02  Aligned_cols=82  Identities=33%  Similarity=0.503  Sum_probs=67.4

Q ss_pred             CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHHhcC--------------chhhhhccccHHHHHHHHHHhh
Q 038390            1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKN--------------TSLVRKHIGSFQEAIVNHEEVL   66 (228)
Q Consensus         1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c~~--------------ps~vr~q~g~f~~af~~~~~~~   66 (228)
                      |+.|++++.+|||+||++|||||+|||+|.||++||++|++|++              |++||+|+|.||+||.+++++ 
T Consensus        49 G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~-  127 (176)
T 3jrn_A           49 GQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR-  127 (176)
T ss_dssp             ----------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT-
T ss_pred             CCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc-
Confidence            78999999999999999999999999999999999999999975              999999999999999999887 


Q ss_pred             cchhhhHHhHHHHHhhcc
Q 038390           67 KGEYRKGAKMERRFARGT   84 (228)
Q Consensus        67 ~~~~~kl~~W~~al~~~~   84 (228)
                       ...+++++|+.||++..
T Consensus       128 -~~~~~~~~Wr~AL~~va  144 (176)
T 3jrn_A          128 -EDPEKVLKWRQALTNFA  144 (176)
T ss_dssp             -SCHHHHHHHHHHHHHHT
T ss_pred             -cCHHHHHHHHHHHHHHh
Confidence             45679999999999844

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=99.92  E-value=3.8e-26  Score=173.09  Aligned_cols=82  Identities=27%  Similarity=0.436  Sum_probs=76.1

Q ss_pred             CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHHhcC---------------chhhhhccccHHHHHHHHHHh
Q 038390            1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKN---------------TSLVRKHIGSFQEAIVNHEEV   65 (228)
Q Consensus         1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c~~---------------ps~vr~q~g~f~~af~~~~~~   65 (228)
                      |+.|++++++|||+||++|||||+|||+|.||++||++|++|++               |++||+|+|.||+||.+++++
T Consensus        76 G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~  155 (204)
T 3ozi_A           76 GKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANK  155 (204)
T ss_dssp             GGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTT
T ss_pred             CCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHh
Confidence            78999999999999999999999999999999999999999962               999999999999999999887


Q ss_pred             hcchhhhHHhHHHHHhhcc
Q 038390           66 LKGEYRKGAKMERRFARGT   84 (228)
Q Consensus        66 ~~~~~~kl~~W~~al~~~~   84 (228)
                      +.  .+++++|+.||++..
T Consensus       156 ~~--~~~v~~Wr~AL~~va  172 (204)
T 3ozi_A          156 FD--GQTIQNWKDALKKVG  172 (204)
T ss_dssp             SC--HHHHHHHHHHHHHHH
T ss_pred             hC--HHHHHHHHHHHHHHh
Confidence            64  358999999999854

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.73  E-value=1.8e-17  Score=136.88  Aligned_cols=122  Identities=16%  Similarity=0.290  Sum_probs=96.1

Q ss_pred             ccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCcc
Q 038390          101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECL  180 (228)
Q Consensus       101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l  180 (228)
                      .++.++..    ++.+++|++|++++| .+..+|..++.+++|++|++++|.+..+|..++.+++|++|++++|+..+.+
T Consensus        92 ~l~~lp~~----l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~  166 (328)
T 4fcg_A           92 PLPQFPDQ----AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTEL  166 (328)
T ss_dssp             CCSSCCSC----GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCC
T ss_pred             CchhcChh----hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCcccc
Confidence            45566666    788888888888888 5668888888888888888888888888888888888888888888777777


Q ss_pred             CcccCC---------CCCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          181 PNFISA---------LKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       181 p~~~~~---------l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      |..++.         +++|++|++++ +.++.+|..++.+++|++|++++|.++++|
T Consensus       167 p~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~  222 (328)
T 4fcg_A          167 PEPLASTDASGEHQGLVNLQSLRLEW-TGIRSLPASIANLQNLKSLKIRNSPLSALG  222 (328)
T ss_dssp             CSCSEEEC-CCCEEESTTCCEEEEEE-ECCCCCCGGGGGCTTCCEEEEESSCCCCCC
T ss_pred             ChhHhhccchhhhccCCCCCEEECcC-CCcCcchHhhcCCCCCCEEEccCCCCCcCc
Confidence            776554         77788888877 456677777777777777777777777665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.72  E-value=2.7e-17  Score=135.78  Aligned_cols=112  Identities=20%  Similarity=0.303  Sum_probs=97.3

Q ss_pred             cCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEec
Q 038390          116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNF  195 (228)
Q Consensus       116 l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l  195 (228)
                      +++|++|++++| .+..+|..++.+++|++|++++|.+..+|..++.+++|+.|++++|+..+.+|..++.+++|++|++
T Consensus       182 l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L  260 (328)
T 4fcg_A          182 LVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL  260 (328)
T ss_dssp             STTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred             CCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence            777788888877 5667888888889999999999998888888889999999999998888888888999999999999


Q ss_pred             cCCCCCcccchhhhcCccccceeccccCCC-CCC
Q 038390          196 SGLLKFRLFPEIMGCIEHLLALRLLGTAIR-GLP  228 (228)
Q Consensus       196 ~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~-~lP  228 (228)
                      ++|+..+.+|..++.+++|+.|++++|++. .+|
T Consensus       261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred             CCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence            998888899988999999999999998765 555

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.65  E-value=1.5e-15  Score=119.05  Aligned_cols=110  Identities=18%  Similarity=0.200  Sum_probs=71.3

Q ss_pred             ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCcccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPNFISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L  190 (228)
                      +..+++|++|++++| .++.+| ..+..+++|++|++++|.++.+|.. +..+++|+.|++++| .++.+|..+..+++|
T Consensus        60 ~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L  137 (229)
T 3e6j_A           60 FDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHL  137 (229)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTC
T ss_pred             hhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC-cccccCcccccCCCC
Confidence            556667777777766 455554 3356667777777777777666544 466677777777764 355666666677777


Q ss_pred             CEEeccCCCCCcccc-hhhhcCccccceeccccCCC
Q 038390          191 STLNFSGLLKFRLFP-EIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n~l~  225 (228)
                      ++|++++ +.++.+| ..+..+++|+.|++++|.+.
T Consensus       138 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          138 THLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            7777776 4566665 34666677777777777654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.63  E-value=4.4e-16  Score=141.13  Aligned_cols=111  Identities=20%  Similarity=0.187  Sum_probs=101.3

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      +..++.|+.|+|++| .+..+|..+..+++|++|+|++|.++.+|..++.+++|++|+|++|. ++.+|..++++++|++
T Consensus       220 ~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          220 KYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKY  297 (727)
T ss_dssp             --CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSE
T ss_pred             hccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCE
Confidence            788899999999999 57789988889999999999999999999999999999999999975 6689999999999999


Q ss_pred             EeccCCCCCcccchhhhcCccccceeccccCCCC
Q 038390          193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRG  226 (228)
Q Consensus       193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~  226 (228)
                      |+|++ +.++.+|..++.|++|+.|+|++|.|++
T Consensus       298 L~L~~-N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          298 FYFFD-NMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             EECCS-SCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             EECCC-CCCCccChhhhcCCCccEEeCCCCccCC
Confidence            99999 5788999999999999999999999985

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.63  E-value=2.3e-15  Score=115.17  Aligned_cols=110  Identities=14%  Similarity=0.047  Sum_probs=59.2

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccc-cchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKG-LLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~  191 (228)
                      +..+++|++|++++|......|..++.+++|++|++++|.+.. .|..++.+++|+.|++++|..++.+| .+..+++|+
T Consensus        84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~  162 (197)
T 4ezg_A           84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELK  162 (197)
T ss_dssp             GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCC
T ss_pred             hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCC
Confidence            4555556666666553222345555556666666666665553 34455556666666666554345554 355556666


Q ss_pred             EEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390          192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  225 (228)
                      +|++++ +.++.++ .+..+++|+.|++++|.|.
T Consensus       163 ~L~l~~-n~i~~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          163 SLNIQF-DGVHDYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             EEECTT-BCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred             EEECCC-CCCcChH-HhccCCCCCEEEeeCcccC
Confidence            666665 3444444 4555566666666666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1.1e-15  Score=114.01  Aligned_cols=117  Identities=16%  Similarity=0.169  Sum_probs=102.4

Q ss_pred             cccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccc-cchhcCCCCCCcEEeccCCCCCCccC-
Q 038390          104 SSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKG-LLLSIVLLSGIVQLNLKGCKNIECLP-  181 (228)
Q Consensus       104 ~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~lp-  181 (228)
                      .++..    +..+++|++|++++| .+..+ ..++.+++|++|++++|.+.. +|..+..+++|++|++++| .++.+| 
T Consensus        40 ~i~~~----~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~  112 (168)
T 2ell_A           40 KIEGL----TAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDIST  112 (168)
T ss_dssp             BCSSC----CGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGG
T ss_pred             hHHHH----HHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchh
Confidence            56665    789999999999999 47666 778899999999999999998 7777788999999999997 467766 


Q ss_pred             -cccCCCCCCCEEeccCCCCCcccch----hhhcCccccceeccccCCCCCC
Q 038390          182 -NFISALKFPSTLNFSGLLKFRLFPE----IMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       182 -~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                       ..+..+++|++|++++ +.+..+|.    .++.+++|+.|++++|.+.++|
T Consensus       113 ~~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          113 LEPLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             GGGGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             HHHHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence             6789999999999999 57777776    7899999999999999998876

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1.4e-15  Score=113.38  Aligned_cols=112  Identities=21%  Similarity=0.247  Sum_probs=97.9

Q ss_pred             cccCCccEEEccCCCCCc--ccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390          114 IFMKSPKTLILSGCSKLK--KFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS  191 (228)
Q Consensus       114 ~~l~~L~~L~ls~~~~l~--~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~  191 (228)
                      ...++|++|++++|. +.  .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.....+|..+.++++|+
T Consensus        21 ~~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            345789999999995 55  8898889999999999999999988 7889999999999999865444787777899999


Q ss_pred             EEeccCCCCCcccc--hhhhcCccccceeccccCCCCCC
Q 038390          192 TLNFSGLLKFRLFP--EIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       192 ~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +|++++ +.++.+|  ..++.+++|+.|++++|.++.+|
T Consensus        99 ~L~Ls~-N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  136 (168)
T 2ell_A           99 HLNLSG-NKLKDISTLEPLKKLECLKSLDLFNCEVTNLN  136 (168)
T ss_dssp             EEECBS-SSCCSSGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred             EEeccC-CccCcchhHHHHhcCCCCCEEEeeCCcCcchH
Confidence            999999 5788876  78999999999999999998765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=1.2e-15  Score=111.41  Aligned_cols=105  Identities=17%  Similarity=0.177  Sum_probs=75.5

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccc-cchhcCCCCCCcEEeccCCCCCCccC--cccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKG-LLLSIVLLSGIVQLNLKGCKNIECLP--NFISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~  189 (228)
                      +..+++|++|++++| .+..+ ..++.+++|++|++++|.+.. +|..++.+++|++|++++|. ++.+|  ..++.+++
T Consensus        38 ~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~  114 (149)
T 2je0_A           38 TDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLEN  114 (149)
T ss_dssp             CTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTT
T ss_pred             HhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCC
Confidence            677778888888877 55555 567777788888888887776 66666667788888888764 55543  66777788


Q ss_pred             CCEEeccCCCCCcccch----hhhcCccccceeccc
Q 038390          190 PSTLNFSGLLKFRLFPE----IMGCIEHLLALRLLG  221 (228)
Q Consensus       190 L~~L~l~~c~~l~~lp~----~~~~l~~L~~L~l~~  221 (228)
                      |++|++++ +.++.+|.    .++.+++|+.|++++
T Consensus       115 L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          115 LKSLDLFN-CEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CCEEECTT-CGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCEEeCcC-CcccchHHHHHHHHHHCCCcccccCCC
Confidence            88888877 45666654    577777888877753

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.60  E-value=8.2e-15  Score=116.24  Aligned_cols=110  Identities=21%  Similarity=0.326  Sum_probs=54.5

Q ss_pred             ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPN-FISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~  189 (228)
                      +..+++|++|++++| .+..+| ..++.+++|++|++++|.++.+|.. +..+++|+.|++++| .++.+|. .++.+++
T Consensus        79 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~  156 (251)
T 3m19_A           79 FDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTN  156 (251)
T ss_dssp             TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             hccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcC
Confidence            344555555555555 233332 3345555555555555555555443 345555555555554 2334433 3455555


Q ss_pred             CCEEeccCCCCCcccch-hhhcCccccceeccccCCC
Q 038390          190 PSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       190 L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~  225 (228)
                      |++|++++ +.++.+|. .+..+++|+.|++++|.++
T Consensus       157 L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          157 LQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            55555555 34444432 4555555555555555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.60  E-value=7.3e-15  Score=114.46  Aligned_cols=112  Identities=17%  Similarity=0.117  Sum_probs=91.4

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPNFISALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~  191 (228)
                      +..+++|++|+|++|......|..+..+++|++|+|++|.++.+|.. +..+++|+.|++++|......|..+..+++|+
T Consensus        52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  131 (220)
T 2v9t_B           52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN  131 (220)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence            77888999999999844344478899999999999999999988876 57899999999999754443466788999999


Q ss_pred             EEeccCCCCCcccch-hhhcCccccceeccccCCC
Q 038390          192 TLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       192 ~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~  225 (228)
                      +|++++ +.++.+|. .+..+++|+.|++++|.+.
T Consensus       132 ~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          132 LLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             EEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            999999 66777764 5888999999999999764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.59  E-value=5.8e-15  Score=115.01  Aligned_cols=111  Identities=13%  Similarity=0.141  Sum_probs=94.3

Q ss_pred             ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCcccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPNFISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L  190 (228)
                      +..+++|++|++++| .+..++ ..+..+++|++|++++|.+..+|.. +..+++|++|++++|......|..+..+++|
T Consensus        53 ~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  131 (220)
T 2v70_A           53 FKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV  131 (220)
T ss_dssp             GGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred             hccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence            678999999999998 566655 4789999999999999999988664 8899999999999976444447788999999


Q ss_pred             CEEeccCCCCCccc-chhhhcCccccceeccccCCC
Q 038390          191 STLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       191 ~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~  225 (228)
                      ++|++++ +.++.+ |..++.+++|+.|++++|.++
T Consensus       132 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          132 RLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            9999999 566666 788999999999999999875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.59  E-value=7.6e-15  Score=119.06  Aligned_cols=113  Identities=20%  Similarity=0.221  Sum_probs=75.9

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccc-hhcCCCCCCcEEeccCCCCCCccCc-ccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLL-LSIVLLSGIVQLNLKGCKNIECLPN-FISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L  190 (228)
                      ...+++|++|++++| .+..+|..+..+++|++|++++|.++.+| ..+..+++|+.|++++|. ++.+|. .+..+++|
T Consensus        73 ~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L  150 (290)
T 1p9a_G           73 DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKL  150 (290)
T ss_dssp             CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTC
T ss_pred             CCCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCC
Confidence            356667777777776 56666766677777777777777777665 346677777777777753 445544 34667777


Q ss_pred             CEEeccCCCCCcccchh-hhcCccccceeccccCCCCCC
Q 038390          191 STLNFSGLLKFRLFPEI-MGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +.|++++ +.++.+|.. +..+++|+.|++++|.|+.+|
T Consensus       151 ~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip  188 (290)
T 1p9a_G          151 EKLSLAN-NNLTELPAGLLNGLENLDTLLLQENSLYTIP  188 (290)
T ss_dssp             CEEECTT-SCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CEEECCC-CcCCccCHHHhcCcCCCCEEECCCCcCCccC
Confidence            7777777 556666643 466777777777777777665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.59  E-value=1.4e-14  Score=112.89  Aligned_cols=119  Identities=20%  Similarity=0.184  Sum_probs=100.3

Q ss_pred             ccccccccccccccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCC
Q 038390          101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIE  178 (228)
Q Consensus       101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~  178 (228)
                      .++.+|..    +.  ++|+.|++++| .+..+| ..+..+++|++|++++|.+..+ |..+..+++|++|++++| .++
T Consensus        22 ~l~~iP~~----l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~   93 (220)
T 2v9t_B           22 GLTEIPTN----LP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KIT   93 (220)
T ss_dssp             CCSSCCSS----CC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCC
T ss_pred             CcCcCCCc----cC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCC
Confidence            46666654    33  68999999999 566665 4789999999999999999988 678999999999999996 467


Q ss_pred             ccCcc-cCCCCCCCEEeccCCCCCccc-chhhhcCccccceeccccCCCCCC
Q 038390          179 CLPNF-ISALKFPSTLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       179 ~lp~~-~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      .+|.. +..+++|++|++++ +.++.+ |..++.+++|+.|+|++|.|+.+|
T Consensus        94 ~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  144 (220)
T 2v9t_B           94 ELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKLQTIA  144 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             ccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence            78765 68899999999999 566666 578999999999999999998765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.59  E-value=9.7e-15  Score=111.37  Aligned_cols=116  Identities=19%  Similarity=0.241  Sum_probs=96.2

Q ss_pred             ccccccccccccccccCCccEEEccCCCCCcccch--hhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCC
Q 038390          101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPE--IVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNI  177 (228)
Q Consensus       101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~--~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~  177 (228)
                      .++.+|..    +.  .+|++|++++| .+..++.  .++.+++|++|++++|.++.+ |..++.+++|++|++++|. +
T Consensus        19 ~l~~ip~~----~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l   90 (192)
T 1w8a_A           19 GLKEIPRD----IP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-I   90 (192)
T ss_dssp             CCSSCCSC----CC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-C
T ss_pred             CcCcCccC----CC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-C
Confidence            45566654    43  38999999999 6777765  389999999999999999988 6789999999999999975 5


Q ss_pred             Ccc-CcccCCCCCCCEEeccCCCCCc-ccchhhhcCccccceeccccCCC
Q 038390          178 ECL-PNFISALKFPSTLNFSGLLKFR-LFPEIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       178 ~~l-p~~~~~l~~L~~L~l~~c~~l~-~lp~~~~~l~~L~~L~l~~n~l~  225 (228)
                      +.+ |..+.++++|++|++++ +.++ ..|..++.+++|++|++++|.++
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           91 KEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CccCHHHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            555 45588999999999999 5566 45788999999999999999886

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.6e-14  Score=110.34  Aligned_cols=116  Identities=20%  Similarity=0.267  Sum_probs=99.2

Q ss_pred             ccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCc
Q 038390          101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIEC  179 (228)
Q Consensus       101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~  179 (228)
                      .++++|..    +  .++|++|++++| .+..+|..+..+++|++|++++|.++.++. .+..+++|+.|++++|. ++.
T Consensus        21 ~l~~ip~~----~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~   92 (193)
T 2wfh_A           21 GLKVLPKG----I--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRC   92 (193)
T ss_dssp             CCSSCCSC----C--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCB
T ss_pred             CCCcCCCC----C--CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCE
Confidence            45666653    3  368999999998 688999999999999999999999999865 58999999999999975 555


Q ss_pred             cC-cccCCCCCCCEEeccCCCCCcccch-hhhcCccccceeccccCCC
Q 038390          180 LP-NFISALKFPSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       180 lp-~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~  225 (228)
                      +| ..+..+++|++|++++ +.++.+|. .+..+++|+.|++++|.+.
T Consensus        93 i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           93 IPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             eCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCee
Confidence            54 5789999999999999 67888886 5889999999999999864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=4.9e-15  Score=130.71  Aligned_cols=106  Identities=14%  Similarity=0.139  Sum_probs=91.9

Q ss_pred             CccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEeccC
Q 038390          118 SPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSG  197 (228)
Q Consensus       118 ~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~  197 (228)
                      .|+.|++++| .+..+|. ++.+++|+.|++++|.++.+|..++.+++|+.|+|++| .++.+| .++++++|+.|++++
T Consensus       442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCS
T ss_pred             CceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCC
Confidence            5888999998 6777887 88899999999999999999999999999999999986 466688 789999999999998


Q ss_pred             CCCCccc--chhhhcCccccceeccccCCCCCC
Q 038390          198 LLKFRLF--PEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       198 c~~l~~l--p~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                       |.++.+  |..++.+++|+.|++++|.|+++|
T Consensus       518 -N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          518 -NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             -SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             -CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence             567766  888999999999999999987654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.58  E-value=7.9e-15  Score=112.19  Aligned_cols=120  Identities=12%  Similarity=0.155  Sum_probs=103.7

Q ss_pred             ccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccc-cchhcCCCCCCcEEeccCCCCCCc
Q 038390          101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKG-LLLSIVLLSGIVQLNLKGCKNIEC  179 (228)
Q Consensus       101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~  179 (228)
                      .++.++.     +..+++|++|++++| .+..++ .+..+++|++|++++|.+.. .|..++.+++|++|++++|.....
T Consensus        55 ~i~~l~~-----l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~  127 (197)
T 4ezg_A           55 NVTDLTG-----IEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS  127 (197)
T ss_dssp             CCSCCTT-----GGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGG
T ss_pred             CccChHH-----HhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcH
Confidence            4445564     889999999999999 666665 68889999999999999986 677899999999999999876556


Q ss_pred             cCcccCCCCCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          180 LPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       180 lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      .|..++.+++|++|++++|..++.+| .++.+++|+.|++++|.++++|
T Consensus       128 ~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~  175 (197)
T 4ezg_A          128 ILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR  175 (197)
T ss_dssp             GHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT
T ss_pred             hHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH
Confidence            78889999999999999966588887 6889999999999999998764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.57  E-value=3e-15  Score=133.83  Aligned_cols=97  Identities=15%  Similarity=0.233  Sum_probs=80.6

Q ss_pred             ccchhhcCCCCcceEEccCCcccc------------------cchhcC--CCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390          132 KFPEIVGNMKFLRQLLLDGTDIKG------------------LLLSIV--LLSGIVQLNLKGCKNIECLPNFISALKFPS  191 (228)
Q Consensus       132 ~~p~~~~~l~~L~~L~l~~~~i~~------------------lp~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~  191 (228)
                      .+|+.++++++|++|++++|.++.                  +|..++  ++++|++|++++|...+.+|..++++++|+
T Consensus       197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  276 (636)
T 4eco_A          197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ  276 (636)
T ss_dssp             EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred             cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence            478888888999999999998887                  888888  899999999998887788888888888999


Q ss_pred             EEeccCCCCCc--ccchhhhcC------ccccceeccccCCCCCC
Q 038390          192 TLNFSGLLKFR--LFPEIMGCI------EHLLALRLLGTAIRGLP  228 (228)
Q Consensus       192 ~L~l~~c~~l~--~lp~~~~~l------~~L~~L~l~~n~l~~lP  228 (228)
                      +|++++|..++  .+|..++.+      ++|++|++++|.++.+|
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip  321 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP  321 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCC
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccC
Confidence            99998865355  588877776      88888888888887766

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.57  E-value=1.6e-14  Score=120.51  Aligned_cols=112  Identities=21%  Similarity=0.181  Sum_probs=93.5

Q ss_pred             ccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          115 FMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       115 ~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      .+++|++|+|++| .+..++ ..+..+++|++|+|++|.++.+|. .+..+++|+.|+|++|......|..+..+++|+.
T Consensus        62 ~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~  140 (361)
T 2xot_A           62 RLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK  140 (361)
T ss_dssp             CCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             cccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE
Confidence            8899999999998 566655 578999999999999999998866 5788999999999997643334677899999999


Q ss_pred             EeccCCCCCcccchhh----hcCccccceeccccCCCCCC
Q 038390          193 LNFSGLLKFRLFPEIM----GCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       193 L~l~~c~~l~~lp~~~----~~l~~L~~L~l~~n~l~~lP  228 (228)
                      |+|++ +.++.+|..+    +.+++|+.|+|++|.|+.+|
T Consensus       141 L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          141 LYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             EECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred             EECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence            99999 6788888764    67899999999999998876

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.57  E-value=2.1e-14  Score=115.74  Aligned_cols=114  Identities=20%  Similarity=0.278  Sum_probs=63.4

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCc-ccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPN-FISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L  190 (228)
                      +..+++|++|++++|...+..|..+..+++|++|++++|.+..+|.. ++.+++|+.|++++| .++.+|. .+..+++|
T Consensus       101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L  179 (285)
T 1ozn_A          101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSL  179 (285)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTC
T ss_pred             hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCcccc
Confidence            44555666666666532222344555566666666666666655443 555666666666664 3444443 35556666


Q ss_pred             CEEeccCCCCCcc-cchhhhcCccccceeccccCCCCCC
Q 038390          191 STLNFSGLLKFRL-FPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       191 ~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +.|++++| .+.. .|..++.+++|+.|++++|.++++|
T Consensus       180 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  217 (285)
T 1ozn_A          180 DRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (285)
T ss_dssp             CEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CEEECCCC-cccccCHhHccCcccccEeeCCCCcCCcCC
Confidence            66666663 3333 3555666666666666666665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.57  E-value=7.5e-15  Score=110.34  Aligned_cols=109  Identities=14%  Similarity=0.100  Sum_probs=87.8

Q ss_pred             ccccC-CccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhc-CCCCCCcEEeccCCCCCCccCc--ccCCCC
Q 038390          113 LIFMK-SPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSI-VLLSGIVQLNLKGCKNIECLPN--FISALK  188 (228)
Q Consensus       113 ~~~l~-~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~~lp~--~~~~l~  188 (228)
                      +..+. +|++|++++| .+..+ +.++.+++|++|++++|.++.+|+.+ +.+++|++|++++|. ++.+|.  .+..++
T Consensus        37 ~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~  113 (176)
T 1a9n_A           37 LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLK  113 (176)
T ss_dssp             GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCT
T ss_pred             hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCC
Confidence            55555 8999999988 56666 56788889999999999998887655 788899999999864 677776  788888


Q ss_pred             CCCEEeccCCCCCcccchh----hhcCccccceeccccCCC
Q 038390          189 FPSTLNFSGLLKFRLFPEI----MGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       189 ~L~~L~l~~c~~l~~lp~~----~~~l~~L~~L~l~~n~l~  225 (228)
                      +|+.|++++ +.+..+|..    ++.+++|+.|++++|.+.
T Consensus       114 ~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          114 SLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             TCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999998 567778874    888899999999888653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.57  E-value=3.1e-14  Score=114.23  Aligned_cols=112  Identities=23%  Similarity=0.395  Sum_probs=57.9

Q ss_pred             ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPN-FISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~  189 (228)
                      +..+++|++|++++| .+..+| ..++.+++|++|++++|.+..+|.. ++.+++|++|++++|. ++.+|. .++.+++
T Consensus        81 l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~  158 (272)
T 3rfs_A           81 LKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTN  158 (272)
T ss_dssp             GTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred             hcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCcc
Confidence            455555666666655 333333 3345555666666666655555443 4555556666665543 334433 2355555


Q ss_pred             CCEEeccCCCCCcccch-hhhcCccccceeccccCCCCC
Q 038390          190 PSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       190 L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      |++|++++| .++.+|. .++.+++|+.|++++|.++++
T Consensus       159 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          159 LTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence            555555552 3444432 345555555555555555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.56  E-value=2.2e-14  Score=115.22  Aligned_cols=112  Identities=23%  Similarity=0.301  Sum_probs=80.0

Q ss_pred             ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccc-hhcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLL-LSIVLLSGIVQLNLKGCKNIECLPN-FISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~  189 (228)
                      +.++++|++|++++| .+..++ ..+..+++|++|++++|.+..++ ..+..+++|++|++++|. +..++. .++.+++
T Consensus        48 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~  125 (276)
T 2z62_A           48 FFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKT  125 (276)
T ss_dssp             TTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTT
T ss_pred             hccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCC
Confidence            667778888888887 454444 46777888888888888777765 457777888888887764 444433 5777788


Q ss_pred             CCEEeccCCCCCcc--cchhhhcCccccceeccccCCCCC
Q 038390          190 PSTLNFSGLLKFRL--FPEIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       190 L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      |++|++++ +.++.  +|..++.+++|++|++++|.++++
T Consensus       126 L~~L~l~~-n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          126 LKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             CCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CCEEECcC-CccceecCchhhccCCCCCEEECCCCCCCcC
Confidence            88888887 44544  677777788888888888877654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.56  E-value=2.6e-15  Score=123.07  Aligned_cols=113  Identities=16%  Similarity=0.213  Sum_probs=80.5

Q ss_pred             ccccCCccEEEccC-CCCCcccchhhcCCCCcceEEccCCccc-ccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCC
Q 038390          113 LIFMKSPKTLILSG-CSKLKKFPEIVGNMKFLRQLLLDGTDIK-GLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~-~~~l~~~p~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L  190 (228)
                      +.++++|++|++++ |...+.+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|...+.+|..++.+++|
T Consensus        72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  151 (313)
T 1ogq_A           72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence            77777778888774 5444567777777777777777777776 567777777777777777765444667777777777


Q ss_pred             CEEeccCCCCCcccchhhhcCc-cccceeccccCCC
Q 038390          191 STLNFSGLLKFRLFPEIMGCIE-HLLALRLLGTAIR  225 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~n~l~  225 (228)
                      ++|++++|..-..+|..++.++ +|+.|++++|.++
T Consensus       152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence            7777777433236777777776 7777777777665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.55  E-value=5.3e-14  Score=112.87  Aligned_cols=112  Identities=21%  Similarity=0.382  Sum_probs=96.6

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCc-ccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPN-FISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L  190 (228)
                      +..+++|++|++++| .+..++ .++.+++|++|++++|.++.+|.. ++.+++|++|++++|. ++.+|. .++.+++|
T Consensus        59 l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L  135 (272)
T 3rfs_A           59 IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNL  135 (272)
T ss_dssp             GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTC
T ss_pred             cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCC
Confidence            889999999999999 566665 688999999999999999988765 6899999999999975 555654 57899999


Q ss_pred             CEEeccCCCCCcccch-hhhcCccccceeccccCCCCCC
Q 038390          191 STLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      ++|++++| .++.+|. .++.+++|+.|++++|.++++|
T Consensus       136 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  173 (272)
T 3rfs_A          136 TYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLP  173 (272)
T ss_dssp             CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccC
Confidence            99999994 6777775 5689999999999999998765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.55  E-value=3.2e-14  Score=111.41  Aligned_cols=120  Identities=19%  Similarity=0.253  Sum_probs=102.3

Q ss_pred             ccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCc
Q 038390          101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIEC  179 (228)
Q Consensus       101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~  179 (228)
                      .++.+|..    +  .++|++|++++|...+..|..+..+++|++|++++|.++.+|.. +..+++|+.|++++| .++.
T Consensus        30 ~l~~ip~~----~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~  102 (229)
T 3e6j_A           30 RHASVPAG----I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTV  102 (229)
T ss_dssp             CCSSCCSC----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCC
T ss_pred             CcCccCCC----C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCc
Confidence            45666653    3  38899999999954444578899999999999999999999865 689999999999997 4667


Q ss_pred             cCc-ccCCCCCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          180 LPN-FISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       180 lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +|. .+..+++|++|++++ +.++.+|..++.+++|+.|++++|.|+.+|
T Consensus       103 l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~  151 (229)
T 3e6j_A          103 LPSAVFDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQNQLKSIP  151 (229)
T ss_dssp             CCTTTTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred             cChhHhCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCCcCCccC
Confidence            765 468999999999999 678899999999999999999999998775

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.55  E-value=2e-14  Score=127.30  Aligned_cols=112  Identities=24%  Similarity=0.326  Sum_probs=92.8

Q ss_pred             ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~  189 (228)
                      +.++++|++|+|++| .+..+| ..|.++++|++|+|++|.++.+|. .+.++++|++|++++|. ++.+|. .++++++
T Consensus        72 f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~  149 (635)
T 4g8a_A           72 FFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKT  149 (635)
T ss_dssp             TTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTT
T ss_pred             HhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcc
Confidence            788899999999998 566665 468889999999999999998875 47889999999999874 566654 5889999


Q ss_pred             CCEEeccCCCCCc--ccchhhhcCccccceeccccCCCCC
Q 038390          190 PSTLNFSGLLKFR--LFPEIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       190 L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      |++|++++ +.++  .+|..++.+++|++|++++|.|+++
T Consensus       150 L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          150 LKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             CCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             cCeecccc-CccccCCCchhhccchhhhhhcccCcccccc
Confidence            99999998 4554  4578888999999999999988754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.55  E-value=2.4e-14  Score=126.89  Aligned_cols=113  Identities=19%  Similarity=0.216  Sum_probs=89.8

Q ss_pred             ccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCccC-cccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECLP-NFISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~  189 (228)
                      +.++++|++|++++| .+..+ |..++++++|++|++++|.+..+ |..++++++|++|++++|. +..+| ..++++++
T Consensus        52 ~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~  129 (606)
T 3vq2_A           52 FSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLIT  129 (606)
T ss_dssp             TTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTT
T ss_pred             ccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCc-cccccccccCCCCC
Confidence            778888999999988 45444 66788888999999999888877 6778888999999998875 44444 67888889


Q ss_pred             CCEEeccCCCCCc-ccchhhhcCccccceeccccCCCCC
Q 038390          190 PSTLNFSGLLKFR-LFPEIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       190 L~~L~l~~c~~l~-~lp~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      |++|++++|.... .+|..++.+++|++|++++|.++++
T Consensus       130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A          130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             CCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence            9999998854333 5788888889999999998888754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.55  E-value=5.8e-14  Score=111.33  Aligned_cols=114  Identities=18%  Similarity=0.193  Sum_probs=97.4

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCcc-cCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPNF-ISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L  190 (228)
                      +..+++|++|++++|...+..|..+..+++|++|++++|.++.+|. .+..+++|++|++++| .++.+|.. +..+++|
T Consensus        55 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L  133 (251)
T 3m19_A           55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKL  133 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcc
Confidence            7889999999999994444445668999999999999999998875 4689999999999997 46677664 6889999


Q ss_pred             CEEeccCCCCCcccch-hhhcCccccceeccccCCCCCC
Q 038390          191 STLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      ++|++++ +.++.+|. .++.+++|+.|++++|.|+.+|
T Consensus       134 ~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A          134 KELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             CEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            9999999 57888876 6899999999999999998765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.55  E-value=3.1e-14  Score=115.47  Aligned_cols=112  Identities=21%  Similarity=0.283  Sum_probs=96.2

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccC-cccCCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLP-NFISALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~  191 (228)
                      +..+++|++|++++| .+..+|.. +.+++|++|++++|.+..+|..+..+++|++|++++|. ++.+| ..+..+++|+
T Consensus        51 ~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~  127 (290)
T 1p9a_G           51 LMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQ  127 (290)
T ss_dssp             GTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCC
T ss_pred             hhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCC
Confidence            778899999999998 67777764 78899999999999999999989999999999999964 56665 5688999999


Q ss_pred             EEeccCCCCCcccch-hhhcCccccceeccccCCCCCC
Q 038390          192 TLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       192 ~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +|++++ +.++.+|. .+..+++|+.|++++|.|+.+|
T Consensus       128 ~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  164 (290)
T 1p9a_G          128 ELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (290)
T ss_dssp             EEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             EEECCC-CCCCccChhhcccccCCCEEECCCCcCCccC
Confidence            999999 56777775 5688999999999999998876

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.54  E-value=6.3e-14  Score=112.29  Aligned_cols=113  Identities=22%  Similarity=0.316  Sum_probs=79.8

Q ss_pred             ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCcc-cCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPNF-ISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~  189 (228)
                      +..+++|++|++++| .+..+| ..+..+++|++|++++|.+..+|. .++.+++|++|++++|. ++.+|.. +..+++
T Consensus        81 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~  158 (270)
T 2o6q_A           81 FKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTS  158 (270)
T ss_dssp             TSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred             hcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcc
Confidence            356777777777777 454444 445677777777777777777654 35777888888888764 5556543 677888


Q ss_pred             CCEEeccCCCCCcccch-hhhcCccccceeccccCCCCCC
Q 038390          190 PSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       190 L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      |+.|++++ +.++.+|. .+..+++|++|++++|.++.+|
T Consensus       159 L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          159 LKELRLYN-NQLKRVPEGAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             CCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cceeEecC-CcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence            88888887 45666664 4777888888888888887665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.54  E-value=7.7e-14  Score=107.41  Aligned_cols=110  Identities=19%  Similarity=0.295  Sum_probs=89.6

Q ss_pred             ccccCCccEEEccCCCCCcccch-hhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPN-FISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~  189 (228)
                      +..+++|++|++++| .+..+|. .+..+++|++|++++|.++.+|.. ++.+++|++|++++|. ++.+|. .+..+++
T Consensus        48 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~  125 (208)
T 2o6s_A           48 FDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQ  125 (208)
T ss_dssp             TTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred             hcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCc
Confidence            568899999999998 5666654 468899999999999999888765 5889999999999864 566655 4688999


Q ss_pred             CCEEeccCCCCCcccch-hhhcCccccceeccccCCC
Q 038390          190 PSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       190 L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~  225 (228)
                      |++|++++ +.++.+|. .++.+++|+.|++++|.+.
T Consensus       126 L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          126 LKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             CCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCEEECCC-CccceeCHHHhccCCCccEEEecCCCee
Confidence            99999998 56777775 4788999999999999876

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.54  E-value=6.6e-14  Score=112.18  Aligned_cols=110  Identities=20%  Similarity=0.275  Sum_probs=72.6

Q ss_pred             ccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPN-FISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~  189 (228)
                      +..+++|++|++++| .+..+ |..++.+++|++|++++|.+..+|.. ++.+++|+.|++++|. ++.+|. .+..+++
T Consensus       105 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~  182 (270)
T 2o6q_A          105 FDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTE  182 (270)
T ss_dssp             TTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTT
T ss_pred             cccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCC
Confidence            456677777777777 34444 34566777777777777777776654 5667777777777753 444543 4667777


Q ss_pred             CCEEeccCCCCCcccch-hhhcCccccceeccccCCC
Q 038390          190 PSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       190 L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~  225 (228)
                      |++|++++ +.++.+|. .+..+++|+.|++++|.+.
T Consensus       183 L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          183 LKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCEEECCC-CcCCcCCHHHhccccCCCEEEecCCCee
Confidence            77777777 45566654 4666777777777777654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.54  E-value=4e-15  Score=132.99  Aligned_cols=123  Identities=15%  Similarity=0.121  Sum_probs=91.1

Q ss_pred             cccccccccccccccccCCccEEEccCCCCCcc------------------cchhhc--CCCCcceEEccCCccc-ccch
Q 038390          100 HSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKK------------------FPEIVG--NMKFLRQLLLDGTDIK-GLLL  158 (228)
Q Consensus       100 ~~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~------------------~p~~~~--~l~~L~~L~l~~~~i~-~lp~  158 (228)
                      ..++.+|..    ++++++|++|+|++|. +..                  +|+.++  ++++|++|++++|.+. .+|.
T Consensus       193 n~l~~ip~~----l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~  267 (636)
T 4eco_A          193 NNITFVSKA----VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT  267 (636)
T ss_dssp             CEEEEECGG----GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT
T ss_pred             CCCccCCHH----HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH
Confidence            355566666    7888888888888884 544                  788777  8888888888888644 5677


Q ss_pred             hcCCCCCCcEEeccCCCCCC--ccCcccCCC------CCCCEEeccCCCCCcccch--hhhcCccccceeccccCCC-CC
Q 038390          159 SIVLLSGIVQLNLKGCKNIE--CLPNFISAL------KFPSTLNFSGLLKFRLFPE--IMGCIEHLLALRLLGTAIR-GL  227 (228)
Q Consensus       159 ~~~~l~~L~~L~l~~~~~~~--~lp~~~~~l------~~L~~L~l~~c~~l~~lp~--~~~~l~~L~~L~l~~n~l~-~l  227 (228)
                      .++++++|++|++++|..++  .+|..++.+      ++|++|++++ +.++.+|.  .++.+++|++|++++|.++ .+
T Consensus       268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~-n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i  346 (636)
T 4eco_A          268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY-NNLKTFPVETSLQKMKKLGMLECLYNQLEGKL  346 (636)
T ss_dssp             TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS-SCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred             HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC-CcCCccCchhhhccCCCCCEEeCcCCcCccch
Confidence            78888888888888876344  577777665      7888888887 45567777  7788888888888888777 55


Q ss_pred             C
Q 038390          228 P  228 (228)
Q Consensus       228 P  228 (228)
                      |
T Consensus       347 p  347 (636)
T 4eco_A          347 P  347 (636)
T ss_dssp             C
T ss_pred             h
Confidence            4

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.53  E-value=7.4e-15  Score=120.31  Aligned_cols=112  Identities=14%  Similarity=0.198  Sum_probs=73.8

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccc-ccchhcCCCCCCcEEeccCCCCCCccCcccCCCC-CC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIK-GLLLSIVLLSGIVQLNLKGCKNIECLPNFISALK-FP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~-~L  190 (228)
                      +..+++|++|++++|...+.+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|...+.+|..++.++ +|
T Consensus        97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L  176 (313)
T 1ogq_A           97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF  176 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred             HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence            667777777777777444467777777777777777777776 5677777777777777777654446677777776 77


Q ss_pred             CEEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390          191 STLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  225 (228)
                      ++|++++|.....+|..++.++ |+.|++++|.++
T Consensus       177 ~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~  210 (313)
T 1ogq_A          177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE  210 (313)
T ss_dssp             CEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred             cEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence            7777776432224555555544 555555555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.53  E-value=4.4e-14  Score=113.90  Aligned_cols=113  Identities=20%  Similarity=0.218  Sum_probs=87.2

Q ss_pred             ccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECLPN-FISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~  189 (228)
                      +..+++|++|++++|..++.+ |..+..+++|++|++++|.+..+ |..+..+++|++|++++|. ++.+|. .++.+++
T Consensus        76 ~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~  154 (285)
T 1ozn_A           76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGN  154 (285)
T ss_dssp             TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred             cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCC
Confidence            677888888888888546666 66788888888888888888877 4557788888888888864 455554 4778888


Q ss_pred             CCEEeccCCCCCcccch-hhhcCccccceeccccCCCCC
Q 038390          190 PSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       190 L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      |++|++++ +.++.+|. .++.+++|+.|++++|.++++
T Consensus       155 L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (285)
T 1ozn_A          155 LTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (285)
T ss_dssp             CCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             ccEEECCC-CcccccCHHHhcCccccCEEECCCCccccc
Confidence            88888888 56777765 478888888888888887743

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.53  E-value=8.2e-14  Score=107.27  Aligned_cols=110  Identities=24%  Similarity=0.403  Sum_probs=82.0

Q ss_pred             cCCccEEEccCCCCCcccch-hhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCc-ccCCCCCCCE
Q 038390          116 MKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPN-FISALKFPST  192 (228)
Q Consensus       116 l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~  192 (228)
                      .++|++|++++| .+..+|. .++.+++|++|++++|.++.+|.. +..+++|++|++++|. ++.+|. .+..+++|++
T Consensus        27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  104 (208)
T 2o6s_A           27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKE  104 (208)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCE
Confidence            457888888888 4555544 467888888888888888877664 5778888888888864 555654 3578888888


Q ss_pred             EeccCCCCCcccch-hhhcCccccceeccccCCCCCC
Q 038390          193 LNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       193 L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      |++++ +.++.+|. .++.+++|+.|++++|.++++|
T Consensus       105 L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  140 (208)
T 2o6s_A          105 LALNT-NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP  140 (208)
T ss_dssp             EECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             EEcCC-CcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence            88888 56666665 4678888888888888887654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.53  E-value=5.1e-14  Score=109.64  Aligned_cols=118  Identities=14%  Similarity=0.165  Sum_probs=97.2

Q ss_pred             ccccccccccccccccCCccEEEccCCCCCccc-c-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCC
Q 038390          101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKF-P-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNI  177 (228)
Q Consensus       101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~-p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~  177 (228)
                      .++.+|..    +  ...+++|++++| .+..+ | ..+..+++|++|++++|.++.++. .+..+++|++|++++|. +
T Consensus        22 ~l~~iP~~----~--~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l   93 (220)
T 2v70_A           22 KLNKIPEH----I--PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-L   93 (220)
T ss_dssp             CCSSCCSC----C--CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-C
T ss_pred             CcccCccC----C--CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-c
Confidence            45556653    3  345789999999 56666 3 358899999999999999999876 78999999999999975 5


Q ss_pred             CccC-cccCCCCCCCEEeccCCCCCccc-chhhhcCccccceeccccCCCCC
Q 038390          178 ECLP-NFISALKFPSTLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       178 ~~lp-~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      +.+| ..+..+++|++|++++ +.++.+ |..++.+++|+.|+|++|.|+.+
T Consensus        94 ~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  144 (220)
T 2v70_A           94 ENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQITTV  144 (220)
T ss_dssp             CCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred             CccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence            5554 4589999999999999 566665 67899999999999999999876

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.52  E-value=6e-14  Score=124.30  Aligned_cols=118  Identities=21%  Similarity=0.113  Sum_probs=100.7

Q ss_pred             ccccccccccccccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCC
Q 038390          101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIE  178 (228)
Q Consensus       101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~  178 (228)
                      +++.+|..    +.  +++++|||++| .++.+| ..|.++++|++|+|++|.|+.+|+ .+.++++|++|+|++|+ ++
T Consensus        42 ~l~~vP~~----lp--~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~  113 (635)
T 4g8a_A           42 NFYKIPDN----LP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQ  113 (635)
T ss_dssp             CCSSCCSS----SC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CC
T ss_pred             CcCccCCC----CC--cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CC
Confidence            67777753    32  47999999999 677775 579999999999999999999976 58999999999999974 77


Q ss_pred             ccCc-ccCCCCCCCEEeccCCCCCcccch-hhhcCccccceeccccCCCCC
Q 038390          179 CLPN-FISALKFPSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       179 ~lp~-~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      .+|. .|.++++|++|++++ +.++.+|+ .++.+++|++|++++|.++.+
T Consensus       114 ~l~~~~f~~L~~L~~L~Ls~-N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~  163 (635)
T 4g8a_A          114 SLALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNLIQSF  163 (635)
T ss_dssp             EECGGGGTTCTTCCEEECTT-SCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred             CCCHHHhcCCCCCCEEECCC-CcCCCCChhhhhcCcccCeeccccCccccC
Confidence            7875 589999999999999 56788875 589999999999999999754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.52  E-value=1.3e-13  Score=112.58  Aligned_cols=109  Identities=19%  Similarity=0.227  Sum_probs=69.8

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      +..+++|++|++++| .+..+| .+..+++|++|++++|.++.+|. +..+++|+.|++++| .++.++. ++.+++|+.
T Consensus        81 ~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~  155 (308)
T 1h6u_A           81 LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQY  155 (308)
T ss_dssp             GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCE
T ss_pred             HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccE
Confidence            555666666666666 355554 35666666666666666666654 666667777777665 3445544 666777777


Q ss_pred             EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      |++++ +.++.+|. ++.+++|+.|++++|.++++|
T Consensus       156 L~l~~-n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~  189 (308)
T 1h6u_A          156 LSIGN-AQVSDLTP-LANLSKLTTLKADDNKISDIS  189 (308)
T ss_dssp             EECCS-SCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             EEccC-CcCCCChh-hcCCCCCCEEECCCCccCcCh
Confidence            77777 45566655 667777777777777776553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.52  E-value=3.9e-14  Score=129.17  Aligned_cols=116  Identities=19%  Similarity=0.169  Sum_probs=88.0

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccc-ccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIK-GLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~  191 (228)
                      +..+++|++|++++|...+.+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|...+.+|..++.+++|+
T Consensus       438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  517 (768)
T 3rgz_A          438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA  517 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence            667777777777777555577777777788888888888776 5677778888888888888766667787788888888


Q ss_pred             EEeccCCCCCcccchhhhcCccccceeccccCCC-CCC
Q 038390          192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR-GLP  228 (228)
Q Consensus       192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~-~lP  228 (228)
                      +|++++|...+.+|..++.+++|+.|++++|.++ .+|
T Consensus       518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip  555 (768)
T 3rgz_A          518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP  555 (768)
T ss_dssp             EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred             EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence            8888886555577888888888888888888776 444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.52  E-value=7.4e-14  Score=119.41  Aligned_cols=114  Identities=19%  Similarity=0.265  Sum_probs=60.6

Q ss_pred             ccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~  189 (228)
                      +.++++|++|+|++|. +..+ +..+.++++|++|++++|.++.+|. .+..+++|+.|++++|. +..+|. .+.++++
T Consensus        84 ~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~  161 (440)
T 3zyj_A           84 FKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPS  161 (440)
T ss_dssp             TSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTT
T ss_pred             hhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcc
Confidence            4555666666666653 3333 3455556666666666666655544 35555666666666543 333433 4455555


Q ss_pred             CCEEeccCCCCCcccch-hhhcCccccceeccccCCCCCC
Q 038390          190 PSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       190 L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      |++|++++|+.++.+|. .+..+++|+.|++++|.++.+|
T Consensus       162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~  201 (440)
T 3zyj_A          162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP  201 (440)
T ss_dssp             CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred             cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence            55555555555555443 3455555555555555554443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.51  E-value=2.6e-14  Score=112.43  Aligned_cols=113  Identities=9%  Similarity=0.112  Sum_probs=64.6

Q ss_pred             ccccCCccEEEccCCCCCcccch-hhcCCCCcceEEccC-Ccccccch-hcCCCCCCcEEeccCCCCCCccCcccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDG-TDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPNFISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~-~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~  189 (228)
                      +..+++|++|++++|..++.+|. .+..+++|++|++++ |.++.+|. .+..+++|++|++++|. ++.+|. ++.+++
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~  128 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYS  128 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCB
T ss_pred             ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-cccccc
Confidence            45566666666666643555543 456666666666665 66666543 45566666666666643 444554 555555


Q ss_pred             CC---EEeccCCCCCcccch-hhhcCcccc-ceeccccCCCCC
Q 038390          190 PS---TLNFSGLLKFRLFPE-IMGCIEHLL-ALRLLGTAIRGL  227 (228)
Q Consensus       190 L~---~L~l~~c~~l~~lp~-~~~~l~~L~-~L~l~~n~l~~l  227 (228)
                      |+   +|++++|..++.+|. .++.+++|+ .|++++|.++.+
T Consensus       129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i  171 (239)
T 2xwt_C          129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV  171 (239)
T ss_dssp             CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred             cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence            55   666666335555553 355566666 666666655544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.51  E-value=6.8e-14  Score=120.03  Aligned_cols=115  Identities=19%  Similarity=0.158  Sum_probs=75.4

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCc-ccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPN-FISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L  190 (228)
                      +.++++|++|+|++|......|..+..+++|++|++++|.++.+|.. ++.+++|++|++++|. +..+|. .+.++++|
T Consensus        95 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L  173 (452)
T 3zyi_A           95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSL  173 (452)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTC
T ss_pred             cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcc
Confidence            56677777777777733333345677777777777777777776554 6667777777777754 445543 46667777


Q ss_pred             CEEeccCCCCCcccch-hhhcCccccceeccccCCCCCC
Q 038390          191 STLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +.|++++|+.++.+|. .+..+++|+.|++++|.++++|
T Consensus       174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~  212 (452)
T 3zyi_A          174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP  212 (452)
T ss_dssp             CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred             cEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence            7777777666666664 4666666666666666666554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=8e-15  Score=134.80  Aligned_cols=110  Identities=18%  Similarity=0.220  Sum_probs=49.2

Q ss_pred             ccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCc-ccc--cchhcCCCC-------CCcEEeccCCCCCCccCc--
Q 038390          115 FMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTD-IKG--LLLSIVLLS-------GIVQLNLKGCKNIECLPN--  182 (228)
Q Consensus       115 ~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~-i~~--lp~~~~~l~-------~L~~L~l~~~~~~~~lp~--  182 (228)
                      ++++|++|+|++|...+.+|..++++++|++|++++|. ++.  +|..++.++       +|+.|++++|. +..+|.  
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~  567 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASA  567 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChh
Confidence            44444444444443344444444444444444444443 332  343333222       44444444432 224444  


Q ss_pred             ccCCCCCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCC
Q 038390          183 FISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       183 ~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      .++++++|+.|++++ +.+..+| .++.+++|+.|++++|.++.+
T Consensus       568 ~l~~L~~L~~L~Ls~-N~l~~lp-~~~~L~~L~~L~Ls~N~l~~l  610 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVH-NKVRHLE-AFGTNVKLTDLKLDYNQIEEI  610 (876)
T ss_dssp             HHTTCTTCCEEECTT-SCCCBCC-CCCTTSEESEEECCSSCCSCC
T ss_pred             hhhcCCCCCEEECCC-CCcccch-hhcCCCcceEEECcCCccccc
Confidence            444555555555554 2333444 444455555555555554443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.51  E-value=3.5e-14  Score=125.77  Aligned_cols=116  Identities=17%  Similarity=0.077  Sum_probs=80.6

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccc--cchhcCCCCCCcEEeccCCCCCCccCcccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKG--LLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L  190 (228)
                      +..+++|++|++++|...+..|..++.+++|++|++++|.+..  +|..++.+++|+.|++++|...+..|..++.+++|
T Consensus       420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  499 (606)
T 3vq2_A          420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL  499 (606)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence            4566777777777775445556667777777777777777764  56667777788888887765444445667777778


Q ss_pred             CEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          191 STLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      ++|++++|......|..++.+++|+.|++++|.|+.+|
T Consensus       500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p  537 (606)
T 3vq2_A          500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK  537 (606)
T ss_dssp             CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEE
T ss_pred             CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccC
Confidence            88888775433344677777777888888887777654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=1.7e-13  Score=102.81  Aligned_cols=117  Identities=21%  Similarity=0.243  Sum_probs=95.9

Q ss_pred             ccccccccccccccccCCccEEEccCCCCCcccch-hhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCC
Q 038390          101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIE  178 (228)
Q Consensus       101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~  178 (228)
                      .++.+|..      ..++|++|++++| .+..+|. .++.+++|++|++++|.++.+|.. ++.+++|+.|++++|. ++
T Consensus        18 ~l~~~p~~------~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~   89 (177)
T 2o6r_A           18 GLTSVPTG------IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQ   89 (177)
T ss_dssp             CCSSCCTT------CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CC
T ss_pred             CCccCCCC------CCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-cc
Confidence            45555542      3478999999998 4666654 578999999999999999998765 6899999999999975 66


Q ss_pred             ccCc-ccCCCCCCCEEeccCCCCCcccchh-hhcCccccceeccccCCCC
Q 038390          179 CLPN-FISALKFPSTLNFSGLLKFRLFPEI-MGCIEHLLALRLLGTAIRG  226 (228)
Q Consensus       179 ~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~n~l~~  226 (228)
                      .+|. .+..+++|++|++++ +.++.+|.. +..+++|+.|++++|.+..
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           90 SLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            6665 468999999999999 578888865 5889999999999999863

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=3.5e-14  Score=103.63  Aligned_cols=113  Identities=19%  Similarity=0.197  Sum_probs=97.3

Q ss_pred             cccCCccEEEccCCCCC-cccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          114 IFMKSPKTLILSGCSKL-KKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       114 ~~l~~L~~L~ls~~~~l-~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      ...++|+.|++++|... +.+|..++.+++|++|++++|.+..+ ..++.+++|++|++++|.....+|..++.+++|++
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            34578999999999533 38898889999999999999999988 77899999999999997654448887888999999


Q ss_pred             EeccCCCCCcccc--hhhhcCccccceeccccCCCCCC
Q 038390          193 LNFSGLLKFRLFP--EIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       193 L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      |++++ +.++.+|  ..++.+++|++|++++|.++++|
T Consensus        93 L~ls~-N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  129 (149)
T 2je0_A           93 LNLSG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN  129 (149)
T ss_dssp             EECTT-SCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred             EECCC-CcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence            99999 5677765  78999999999999999998664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.51  E-value=9.7e-14  Score=118.69  Aligned_cols=114  Identities=18%  Similarity=0.215  Sum_probs=81.5

Q ss_pred             ccccCCccEEEccCCCCCcccch-hhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~  191 (228)
                      +..+++|++|++++|+.++.++. .+..+++|++|++++|.++.+| .+..+++|+.|++++|......|..+.++++|+
T Consensus       156 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  234 (440)
T 3zyj_A          156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ  234 (440)
T ss_dssp             TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCC
Confidence            55666777777777666666654 5677788888888888887777 367778888888888643333366777888888


Q ss_pred             EEeccCCCCCccc-chhhhcCccccceeccccCCCCCC
Q 038390          192 TLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       192 ~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      .|++++ +.++.+ |..+..+++|+.|+|++|.|+.+|
T Consensus       235 ~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  271 (440)
T 3zyj_A          235 KLWMIQ-SQIQVIERNAFDNLQSLVEINLAHNNLTLLP  271 (440)
T ss_dssp             EEECTT-CCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred             EEECCC-CceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence            888887 455544 456777888888888888887665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=5.3e-14  Score=105.67  Aligned_cols=112  Identities=14%  Similarity=0.156  Sum_probs=96.2

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCccc-CCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFI-SALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~  191 (228)
                      +..+++|++|++++| .+..+|......++|++|++++|.++.+ ..++.+++|++|++++|. ++.+|..+ ..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence            667889999999999 6777776444444999999999999988 678999999999999974 67787655 8999999


Q ss_pred             EEeccCCCCCcccch--hhhcCccccceeccccCCCCCC
Q 038390          192 TLNFSGLLKFRLFPE--IMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       192 ~L~l~~c~~l~~lp~--~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +|++++ +.++.+|.  .++.+++|+.|++++|.++.+|
T Consensus        92 ~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~  129 (176)
T 1a9n_A           92 ELILTN-NSLVELGDLDPLASLKSLTYLCILRNPVTNKK  129 (176)
T ss_dssp             EEECCS-CCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             EEECCC-CcCCcchhhHhhhcCCCCCEEEecCCCCCCcH
Confidence            999999 67888987  8899999999999999998665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.50  E-value=2.4e-14  Score=118.90  Aligned_cols=111  Identities=19%  Similarity=0.197  Sum_probs=52.3

Q ss_pred             ccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCc--ccCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPN--FISALK  188 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~  188 (228)
                      +..+++|++|++++| .+..+ |..++.+++|++|++++|.++.+|.. ++.+++|++|++++| .++.+|.  .+.+++
T Consensus        72 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~  149 (353)
T 2z80_A           72 LQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLT  149 (353)
T ss_dssp             TTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCT
T ss_pred             hccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCC
Confidence            444555555555555 23322 33455555555555555555555443 445555555555553 2334443  344455


Q ss_pred             CCCEEeccCCCCCcccc-hhhhcCccccceeccccCCC
Q 038390          189 FPSTLNFSGLLKFRLFP-EIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       189 ~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n~l~  225 (228)
                      +|++|++++|+.++.++ ..++.+++|++|++++|.++
T Consensus       150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence            55555555543344332 33444444444444444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.50  E-value=1.4e-13  Score=117.70  Aligned_cols=112  Identities=13%  Similarity=0.042  Sum_probs=93.9

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~  191 (228)
                      +..+++|++|++++|...+..|..++.+++|++|++++|.++++ |..++.+++|+.|++++|......|..+..+++|+
T Consensus       295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  374 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK  374 (455)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence            77889999999999954444577889999999999999999887 56788999999999999764444477889999999


Q ss_pred             EEeccCCCCCcccch-hhhcCccccceeccccCCC
Q 038390          192 TLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       192 ~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~  225 (228)
                      +|++++ +.++.+|. .++.+++|+.|++++|.++
T Consensus       375 ~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          375 ELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             EEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EEECCC-CccccCCHhHhccCCcccEEEccCCCcc
Confidence            999999 67777775 5688999999999999987

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.50  E-value=1.2e-13  Score=118.44  Aligned_cols=114  Identities=22%  Similarity=0.233  Sum_probs=80.3

Q ss_pred             ccccCCccEEEccCCCCCcccch-hhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~  191 (228)
                      +..+++|+.|++++|+.++.+|. .+..+++|++|++++|.+..+| .+..+++|+.|++++|......|..+.++++|+
T Consensus       167 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  245 (452)
T 3zyi_A          167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK  245 (452)
T ss_dssp             TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCC
T ss_pred             HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCC
Confidence            45566666666666656666654 4667777888888888777776 467777888888887654444466777888888


Q ss_pred             EEeccCCCCCccc-chhhhcCccccceeccccCCCCCC
Q 038390          192 TLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       192 ~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      .|++++| .+..+ |..+..+++|+.|+|++|.|+.+|
T Consensus       246 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  282 (452)
T 3zyi_A          246 KLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLSSLP  282 (452)
T ss_dssp             EEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             EEEeCCC-cCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence            8888874 45544 566778888888888888887665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.50  E-value=7.1e-14  Score=116.10  Aligned_cols=115  Identities=18%  Similarity=0.065  Sum_probs=97.5

Q ss_pred             ccccCCccEEEccCCCCCcccchh-hcCCCCcceEEccCCcccccch--hcCCCCCCcEEeccCCCCCCcc-CcccCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEI-VGNMKFLRQLLLDGTDIKGLLL--SIVLLSGIVQLNLKGCKNIECL-PNFISALK  188 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~-~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~  188 (228)
                      +.++++|++|++++| .+..+|.. ++.+++|++|++++|.++.+|.  .+..+++|++|++++|+.++.+ |..+++++
T Consensus        96 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  174 (353)
T 2z80_A           96 FSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT  174 (353)
T ss_dssp             TTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             cCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCC
Confidence            778899999999998 56677655 8899999999999999999987  6889999999999998667776 45788999


Q ss_pred             CCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          189 FPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       189 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +|++|++++|..-...|..++.+++|++|++++|.++.+|
T Consensus       175 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  214 (353)
T 2z80_A          175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL  214 (353)
T ss_dssp             EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred             CCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch
Confidence            9999999995443345788999999999999999987643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.49  E-value=2e-13  Score=111.57  Aligned_cols=108  Identities=19%  Similarity=0.257  Sum_probs=74.3

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      +..+++|++|++++| .+..+|. +..+++|++|++++|.+..++. ++.+++|+.|++++| .++.++. +..+++|+.
T Consensus       103 ~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~  177 (308)
T 1h6u_A          103 IAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTT  177 (308)
T ss_dssp             GTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCE
T ss_pred             hcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh-hcCCCCCCE
Confidence            667777888888877 4666654 6777777777777777777665 667777777777775 3455555 667777777


Q ss_pred             EeccCCCCCcccchhhhcCccccceeccccCCCCC
Q 038390          193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      |++++ +.++.+|. +..+++|+.|++++|.++++
T Consensus       178 L~l~~-n~l~~~~~-l~~l~~L~~L~L~~N~l~~~  210 (308)
T 1h6u_A          178 LKADD-NKISDISP-LASLPNLIEVHLKNNQISDV  210 (308)
T ss_dssp             EECCS-SCCCCCGG-GGGCTTCCEEECTTSCCCBC
T ss_pred             EECCC-CccCcChh-hcCCCCCCEEEccCCccCcc
Confidence            77777 45555554 56666777777777766654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.49  E-value=3.4e-14  Score=130.63  Aligned_cols=113  Identities=10%  Similarity=0.091  Sum_probs=102.4

Q ss_pred             ccccCCccEEEccCCCCCc--ccchhhcCCC-------CcceEEccCCcccccch--hcCCCCCCcEEeccCCCCCCccC
Q 038390          113 LIFMKSPKTLILSGCSKLK--KFPEIVGNMK-------FLRQLLLDGTDIKGLLL--SIVLLSGIVQLNLKGCKNIECLP  181 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~--~~p~~~~~l~-------~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~lp  181 (228)
                      ++++++|+.|++++|..+.  .+|..++.++       +|++|++++|.+..+|.  .++.+++|+.|++++|. +..+|
T Consensus       511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp  589 (876)
T 4ecn_A          511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE  589 (876)
T ss_dssp             GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC
T ss_pred             HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch
Confidence            8899999999999996355  5898887776       99999999999999999  89999999999999976 55899


Q ss_pred             cccCCCCCCCEEeccCCCCCcccchhhhcCcc-ccceeccccCCCCCC
Q 038390          182 NFISALKFPSTLNFSGLLKFRLFPEIMGCIEH-LLALRLLGTAIRGLP  228 (228)
Q Consensus       182 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~-L~~L~l~~n~l~~lP  228 (228)
                       .++.+++|+.|++++ +.+..+|+.++.+++ |+.|++++|.++.+|
T Consensus       590 -~~~~L~~L~~L~Ls~-N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp  635 (876)
T 4ecn_A          590 -AFGTNVKLTDLKLDY-NQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP  635 (876)
T ss_dssp             -CCCTTSEESEEECCS-SCCSCCCTTSCEECTTCCEEECCSSCCCSCC
T ss_pred             -hhcCCCcceEEECcC-CccccchHHHhhccccCCEEECcCCCCCcCc
Confidence             899999999999999 567799999999999 999999999999876

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.49  E-value=1.2e-13  Score=112.40  Aligned_cols=113  Identities=19%  Similarity=0.202  Sum_probs=70.1

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccc--cchhcCCCCCCcEEeccCCCCCCccCcccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKG--LLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L  190 (228)
                      +..+++|++|++++|......|..+..+++|++|++++|.+..  +|..+..+++|+.|++++|......|..+..+++|
T Consensus       122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  201 (306)
T 2z66_A          122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  201 (306)
T ss_dssp             TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence            4556667777777664333445556666777777777776654  56666667777777777654322235556666777


Q ss_pred             CEEeccCCCCCcccc-hhhhcCccccceeccccCCCC
Q 038390          191 STLNFSGLLKFRLFP-EIMGCIEHLLALRLLGTAIRG  226 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n~l~~  226 (228)
                      ++|++++ +.++.+| ..++.+++|+.|++++|.+++
T Consensus       202 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          202 QVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             CEEECTT-SCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred             CEEECCC-CccCccChhhccCcccCCEeECCCCCCcc
Confidence            7777776 3455444 356666677777777776653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.49  E-value=1.5e-13  Score=103.23  Aligned_cols=101  Identities=15%  Similarity=0.189  Sum_probs=63.1

Q ss_pred             cEEEccCCCCCcccchhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCccCcc-cCCCCCCCEEeccC
Q 038390          120 KTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECLPNF-ISALKFPSTLNFSG  197 (228)
Q Consensus       120 ~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~  197 (228)
                      +.++++++ .++.+|..+.  ++|++|++++|.+..+ |..++.+++|++|+|++| .++.+|.. +.++++|++|++++
T Consensus        15 ~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence            55666665 5566665443  5666677777766666 345666667777777664 35555543 45666777777766


Q ss_pred             CCCCcccchh-hhcCccccceeccccCCC
Q 038390          198 LLKFRLFPEI-MGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       198 c~~l~~lp~~-~~~l~~L~~L~l~~n~l~  225 (228)
                       |.++.+|.. ++.+++|+.|++++|.+.
T Consensus        91 -N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 -NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             -SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             -CccceeCHHHhccccCCCEEEeCCCCcc
Confidence             456666643 666667777777776665

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.49  E-value=1.5e-13  Score=109.93  Aligned_cols=114  Identities=19%  Similarity=0.219  Sum_probs=96.8

Q ss_pred             ccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCcc
Q 038390          101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECL  180 (228)
Q Consensus       101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l  180 (228)
                      .++.++.     +..+++|++|++++| .+..+|. ++.+++|++|++++|.++.+|....  ++|+.|++++| .++.+
T Consensus        52 ~i~~l~~-----l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N-~l~~~  121 (263)
T 1xeu_A           52 NIQSLAG-----MQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNN-ELRDT  121 (263)
T ss_dssp             CCCCCTT-----GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSS-CCSBS
T ss_pred             CcccchH-----HhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCC-ccCCC
Confidence            4455554     889999999999998 6777877 8999999999999999999876444  89999999997 46666


Q ss_pred             CcccCCCCCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCC
Q 038390          181 PNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       181 p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      | .+..+++|+.|++++ +.++.+| .++.+++|+.|++++|.|+++
T Consensus       122 ~-~l~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          122 D-SLIHLKNLEILSIRN-NKLKSIV-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             G-GGTTCTTCCEEECTT-SCCCBCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             h-hhcCcccccEEECCC-CcCCCCh-HHccCCCCCEEECCCCcCcch
Confidence            5 488999999999999 6788886 688999999999999998754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.49  E-value=2.9e-13  Score=108.21  Aligned_cols=108  Identities=18%  Similarity=0.254  Sum_probs=90.3

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      +..+++|++|++++| .+..+|....  ++|++|++++|.++.+| .+..+++|+.|++++|. ++.+| .++.+++|+.
T Consensus        81 l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~  154 (263)
T 1xeu_A           81 LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEV  154 (263)
T ss_dssp             GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCE
T ss_pred             hccCCCCCEEECCCC-ccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCE
Confidence            778899999999998 6777776444  88999999999998886 58899999999999864 66776 5888999999


Q ss_pred             EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      |++++ +.+..+ ..+..+++|+.|++++|.++..|
T Consensus       155 L~L~~-N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          155 LDLHG-NEITNT-GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             EECTT-SCCCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             EECCC-CcCcch-HHhccCCCCCEEeCCCCcccCCc
Confidence            99999 567776 67888999999999999887544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.49  E-value=3e-13  Score=109.64  Aligned_cols=109  Identities=24%  Similarity=0.267  Sum_probs=73.6

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      +..+++|++|++++| .+..+|. ++.+++|++|++++|.++.++ .+..+++|+.|++++|. ++.+ ..++.+++|+.
T Consensus        86 l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~  160 (291)
T 1h6t_A           86 LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDT  160 (291)
T ss_dssp             GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSE
T ss_pred             cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCE
Confidence            556667777777766 4555544 666777777777777776663 46667777777777653 4445 34667777777


Q ss_pred             EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      |++++ +.++.++. ++.+++|+.|++++|.|+.+|
T Consensus       161 L~L~~-N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~  194 (291)
T 1h6t_A          161 LSLED-NQISDIVP-LAGLTKLQNLYLSKNHISDLR  194 (291)
T ss_dssp             EECCS-SCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred             EEccC-Cccccchh-hcCCCccCEEECCCCcCCCCh
Confidence            77777 45666655 777778888888888776653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.49  E-value=1.6e-13  Score=104.67  Aligned_cols=104  Identities=22%  Similarity=0.272  Sum_probs=90.5

Q ss_pred             cEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccC-cccCCCCCCCEEeccCC
Q 038390          120 KTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLP-NFISALKFPSTLNFSGL  198 (228)
Q Consensus       120 ~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~c  198 (228)
                      ++++++++ .++.+|..+.  ++|++|++++|.++.+|..+..+++|+.|++++|. ++.++ ..|.++++|++|++++ 
T Consensus        13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~-   87 (193)
T 2wfh_A           13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSY-   87 (193)
T ss_dssp             TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS-
T ss_pred             CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCC-
Confidence            67899887 6888887554  68999999999999999999999999999999975 55554 5689999999999999 


Q ss_pred             CCCcccc-hhhhcCccccceeccccCCCCCC
Q 038390          199 LKFRLFP-EIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       199 ~~l~~lp-~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +.++.+| ..++.+++|+.|+|++|.|+.+|
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~  118 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVP  118 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeC
Confidence            6677776 57999999999999999998775

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.49  E-value=1.3e-13  Score=113.40  Aligned_cols=109  Identities=17%  Similarity=0.194  Sum_probs=67.9

Q ss_pred             ccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCcc-CcccCCCCCCCE
Q 038390          115 FMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECL-PNFISALKFPST  192 (228)
Q Consensus       115 ~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~  192 (228)
                      .+++|++|++++| .+..+|..+.  ++|++|++++|.++.+ |..+..+++|+.|++++|. ++.+ +..+..+++|++
T Consensus       169 ~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  244 (330)
T 1xku_A          169 GMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRE  244 (330)
T ss_dssp             GCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCE
T ss_pred             CCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCE
Confidence            3444444444444 3333333222  4555555555555554 4456777777777777764 3444 335677778888


Q ss_pred             EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      |++++ +.++.+|..++.+++|++|++++|.|+.+|
T Consensus       245 L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~  279 (330)
T 1xku_A          245 LHLNN-NKLVKVPGGLADHKYIQVVYLHNNNISAIG  279 (330)
T ss_dssp             EECCS-SCCSSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             EECCC-CcCccCChhhccCCCcCEEECCCCcCCccC
Confidence            88887 466778877777888888888888877664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=1.7e-13  Score=102.44  Aligned_cols=102  Identities=20%  Similarity=0.236  Sum_probs=65.3

Q ss_pred             ccEEEccCCCCCcccchhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCccCcc-cCCCCCCCEEecc
Q 038390          119 PKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECLPNF-ISALKFPSTLNFS  196 (228)
Q Consensus       119 L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~  196 (228)
                      .+++++++| .+..+|..+.  ++|++|++++|.++.+ |..+..+++|++|++++|. ++.+|.. +..+++|++|+++
T Consensus        11 ~~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence            456677766 5666665442  5677777777777666 4456667777777777653 4555543 4667777777777


Q ss_pred             CCCCCcccch-hhhcCccccceeccccCCC
Q 038390          197 GLLKFRLFPE-IMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       197 ~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~  225 (228)
                      + |.++.+|. .++.+++|+.|+|++|.++
T Consensus        87 ~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 D-NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             S-SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             C-CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            7 45666654 4666777777777777654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.48  E-value=2.4e-13  Score=110.20  Aligned_cols=107  Identities=18%  Similarity=0.187  Sum_probs=66.4

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      +..+++|++|++++| .+..++ .+..+++|++|++++|.++.+ ..++.+++|+.|++++|. ++.++. +..+++|+.
T Consensus       108 l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~  182 (291)
T 1h6t_A          108 LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQN  182 (291)
T ss_dssp             GTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCE
T ss_pred             hccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCE
Confidence            556666666666666 454543 355666666666666666666 356666666666666653 444544 666666666


Q ss_pred             EeccCCCCCcccchhhhcCccccceeccccCCCC
Q 038390          193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRG  226 (228)
Q Consensus       193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~  226 (228)
                      |++++ +.++.+|. +..+++|+.|++++|.++.
T Consensus       183 L~L~~-N~i~~l~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          183 LYLSK-NHISDLRA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             EECCS-SCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred             EECCC-CcCCCChh-hccCCCCCEEECcCCcccC
Confidence            66666 45566653 5666666666666666554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.48  E-value=1.6e-13  Score=118.28  Aligned_cols=113  Identities=18%  Similarity=0.134  Sum_probs=54.6

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPNFISALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~  191 (228)
                      +..+++|++|+|++|...+..|..++++++|++|++++|.++.+|.. +..+++|++|++++|......|..+..+++|+
T Consensus        52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  131 (477)
T 2id5_A           52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK  131 (477)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence            44555555555555522222244555555555555555555555443 34555555555555433222333445555555


Q ss_pred             EEeccCCCCCccc-chhhhcCccccceeccccCCCC
Q 038390          192 TLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRG  226 (228)
Q Consensus       192 ~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~  226 (228)
                      +|++++ +.+..+ |..++.+++|+.|++++|.++.
T Consensus       132 ~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  166 (477)
T 2id5_A          132 SLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLTS  166 (477)
T ss_dssp             EEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred             EEECCC-CccceeChhhccCCCCCCEEECCCCcCcc
Confidence            555555 223322 2344444455555555544443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.47  E-value=2e-13  Score=116.88  Aligned_cols=110  Identities=19%  Similarity=0.188  Sum_probs=96.2

Q ss_pred             CCccEEEccCCCCCcccchhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCcc-CcccCCCCCCCEEe
Q 038390          117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECL-PNFISALKFPSTLN  194 (228)
Q Consensus       117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~  194 (228)
                      ++|++|++++|...+..|..++.+++|++|++++|.+..+ |..++.+++|+.|++++|.. +.+ |..++.+++|++|+
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CEECGGGGTTCTTCCEEE
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc-CCcChhHhcCcccCCEEE
Confidence            6899999999966666788899999999999999999987 55789999999999999764 555 67789999999999


Q ss_pred             ccCCCCCccc-chhhhcCccccceeccccCCCCCC
Q 038390          195 FSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       195 l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +++| .++.+ |..++.+++|++|++++|.|+++|
T Consensus       354 Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  387 (455)
T 3v47_A          354 LSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVP  387 (455)
T ss_dssp             CCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCCC-cccccChhhccccccccEEECCCCccccCC
Confidence            9995 55655 788999999999999999999876

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.47  E-value=1.4e-13  Score=125.59  Aligned_cols=116  Identities=19%  Similarity=0.153  Sum_probs=99.5

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccc-ccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIK-GLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~  191 (228)
                      +..+++|++|++++|...+.+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|...+.+|..++++++|+
T Consensus       414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  493 (768)
T 3rgz_A          414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN  493 (768)
T ss_dssp             GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence            778889999999998655678888999999999999999887 6788889999999999999877668888899999999


Q ss_pred             EEeccCCCCCcccchhhhcCccccceeccccCCC-CCC
Q 038390          192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR-GLP  228 (228)
Q Consensus       192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~-~lP  228 (228)
                      +|++++|.....+|..++.+++|++|++++|.++ .+|
T Consensus       494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  531 (768)
T 3rgz_A          494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP  531 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred             EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence            9999996655588999999999999999999887 444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.47  E-value=1e-13  Score=109.03  Aligned_cols=113  Identities=14%  Similarity=0.125  Sum_probs=76.5

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcc---eEEccCC-cccccchh-cCCCCCCc-EEeccCCCCCCccCcccCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLR---QLLLDGT-DIKGLLLS-IVLLSGIV-QLNLKGCKNIECLPNFISA  186 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~---~L~l~~~-~i~~lp~~-~~~l~~L~-~L~l~~~~~~~~lp~~~~~  186 (228)
                      +..+++|++|++++| .+..+|. ++.+++|+   +|++++| .++.+|.. +..+++|+ .|++++|. ++.+|.....
T Consensus       101 f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~  177 (239)
T 2xwt_C          101 LKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFN  177 (239)
T ss_dssp             EECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTT
T ss_pred             hCCCCCCCEEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcC
Confidence            456666667777666 4555665 56666666   7777777 77766543 66777777 77777753 5566665444


Q ss_pred             CCCCCEEeccCCCCCcccc-hhhhcC-ccccceeccccCCCCCC
Q 038390          187 LKFPSTLNFSGLLKFRLFP-EIMGCI-EHLLALRLLGTAIRGLP  228 (228)
Q Consensus       187 l~~L~~L~l~~c~~l~~lp-~~~~~l-~~L~~L~l~~n~l~~lP  228 (228)
                      .++|+.|++++|..++.+| ..++.+ ++|+.|++++|.++.+|
T Consensus       178 ~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~  221 (239)
T 2xwt_C          178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP  221 (239)
T ss_dssp             TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred             CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC
Confidence            4777888887743477775 457777 88888888888887765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.47  E-value=3.4e-13  Score=117.42  Aligned_cols=112  Identities=20%  Similarity=0.234  Sum_probs=76.6

Q ss_pred             ccccCCccEEEccCCCCCc---ccchhhcCCCCcceEEccCCcccc-cchh-cCCCCCCcEEeccCCCCCCccCcccCCC
Q 038390          113 LIFMKSPKTLILSGCSKLK---KFPEIVGNMKFLRQLLLDGTDIKG-LLLS-IVLLSGIVQLNLKGCKNIECLPNFISAL  187 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~---~~p~~~~~l~~L~~L~l~~~~i~~-lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l  187 (228)
                      +..+++|++|++++| .+.   .+|..++.+++|++|++++|.+.. +|.. +..+++|+.|++++|...+..|..+.  
T Consensus       344 ~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--  420 (520)
T 2z7x_B          344 CGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--  420 (520)
T ss_dssp             CCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--
T ss_pred             hccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--
Confidence            667777888888877 344   445667777888888888887776 6654 56667777777777654444454432  


Q ss_pred             CCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          188 KFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       188 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      ++|+.|++++ +.++.+|..+..+++|++|++++|.|+.+|
T Consensus       421 ~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~  460 (520)
T 2z7x_B          421 PRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASNQLKSVP  460 (520)
T ss_dssp             TTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred             ccCCEEECCC-CcccccchhhhcCCCCCEEECCCCcCCccC
Confidence            5677777777 456677776667777777777777777665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.46  E-value=6.1e-14  Score=114.12  Aligned_cols=114  Identities=18%  Similarity=0.207  Sum_probs=79.1

Q ss_pred             ccccCCccEEEccCCCCCcccc--hhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCC-ccCcccCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFP--EIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIE-CLPNFISALK  188 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p--~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~  188 (228)
                      +..+++|++|++++| .+..++  ..+..+++|++|++++|.+..+ |..+..+++|+.|++++|.... .+|..+..++
T Consensus        97 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  175 (306)
T 2z66_A           97 FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  175 (306)
T ss_dssp             EETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             cCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence            556677777777776 444444  3566777777777777776644 4456677777788777764333 3677778888


Q ss_pred             CCCEEeccCCCCCccc-chhhhcCccccceeccccCCCCCC
Q 038390          189 FPSTLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       189 ~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +|++|++++| .++.+ |..++.+++|+.|++++|.++++|
T Consensus       176 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  215 (306)
T 2z66_A          176 NLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLD  215 (306)
T ss_dssp             TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             CCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence            8888888884 45554 567888888888888888887653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.46  E-value=3.6e-13  Score=112.39  Aligned_cols=119  Identities=18%  Similarity=0.170  Sum_probs=98.3

Q ss_pred             ccccccccccccccccCCccEEEccCCCCCcccch-hhc-CCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCC
Q 038390          101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPE-IVG-NMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNI  177 (228)
Q Consensus       101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~-~~~-~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~  177 (228)
                      .++.+|..    +  .+.++.|+|++| .+..++. .+. .+++|++|+|++|.+..++. .+..+++|++|+|++|. +
T Consensus        29 ~l~~iP~~----~--~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l  100 (361)
T 2xot_A           29 QLPNVPQS----L--PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-L  100 (361)
T ss_dssp             CCSSCCSS----C--CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-C
T ss_pred             CcCccCcc----C--CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-C
Confidence            45666653    3  245899999999 5666654 455 89999999999999999875 68999999999999975 6


Q ss_pred             CccCc-ccCCCCCCCEEeccCCCCCccc-chhhhcCccccceeccccCCCCCC
Q 038390          178 ECLPN-FISALKFPSTLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       178 ~~lp~-~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +.+|. .+..+++|+.|+|++ +.+..+ |..++.+++|+.|+|++|.|+.+|
T Consensus       101 ~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~  152 (361)
T 2xot_A          101 HTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQNQISRFP  152 (361)
T ss_dssp             CEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred             CcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence            66655 688999999999999 566665 678999999999999999999876

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.46  E-value=2.4e-13  Score=121.99  Aligned_cols=112  Identities=19%  Similarity=0.111  Sum_probs=48.4

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccC-cccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLP-NFISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L  190 (228)
                      +.++++|++|++++|...+..|..++++++|++|++++|.+..+|. .++++++|++|++++|. +..+| ..++++++|
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L  123 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNL  123 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTC
T ss_pred             HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCC
Confidence            3444445555555442222224444444445555555444444443 24444444454444432 22232 334444444


Q ss_pred             CEEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390          191 STLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  225 (228)
                      ++|++++|......|..++.+++|++|++++|.++
T Consensus       124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  158 (680)
T 1ziw_A          124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ  158 (680)
T ss_dssp             CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred             CEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence            44444443222222333444444444444444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.46  E-value=2.7e-13  Score=119.06  Aligned_cols=112  Identities=23%  Similarity=0.301  Sum_probs=85.5

Q ss_pred             ccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCcccccc-hhcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGLL-LSIVLLSGIVQLNLKGCKNIECLPN-FISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~  189 (228)
                      +.++++|++|++++| .+..+ |..++++++|++|++++|.+..+| ..++.+++|++|++++|. +..+|. .++++++
T Consensus        48 ~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~  125 (570)
T 2z63_A           48 FFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKT  125 (570)
T ss_dssp             TTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTT
T ss_pred             hhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc-cccCCCcccccccc
Confidence            677888888888888 45555 456788888888888888887775 567888888888888864 555654 5788888


Q ss_pred             CCEEeccCCCCCc--ccchhhhcCccccceeccccCCCCC
Q 038390          190 PSTLNFSGLLKFR--LFPEIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       190 L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      |++|++++| .+.  .+|+.++.+++|++|++++|.++.+
T Consensus       126 L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A          126 LKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             CCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred             ccEEecCCC-ccceecChhhhcccCCCCEEeCcCCcccee
Confidence            888888884 444  4678888888888888888887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.46  E-value=2.2e-13  Score=120.14  Aligned_cols=111  Identities=14%  Similarity=0.104  Sum_probs=96.0

Q ss_pred             cccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCc
Q 038390          100 HSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIEC  179 (228)
Q Consensus       100 ~~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~  179 (228)
                      ..++.+|.     ++.+++|+.|+|++| .+..+|..++.+++|+.|+|++|.++.+| .++.+++|+.|++++|. ++.
T Consensus       451 n~l~~lp~-----~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~-l~~  522 (567)
T 1dce_A          451 KDLTVLCH-----LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-LQQ  522 (567)
T ss_dssp             SCCSSCCC-----GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-CCS
T ss_pred             CCCCCCcC-----ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC-CCC
Confidence            35666665     899999999999999 67799999999999999999999999999 89999999999999975 566


Q ss_pred             c--CcccCCCCCCCEEeccCCCCCcccchh----hhcCccccceec
Q 038390          180 L--PNFISALKFPSTLNFSGLLKFRLFPEI----MGCIEHLLALRL  219 (228)
Q Consensus       180 l--p~~~~~l~~L~~L~l~~c~~l~~lp~~----~~~l~~L~~L~l  219 (228)
                      +  |..++.+++|+.|++++ |.++.+|+.    +..+++|+.|++
T Consensus       523 ~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          523 SAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCcHHHhcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCccCC
Confidence            6  89999999999999999 667777654    344888998864

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.46  E-value=4.9e-13  Score=109.97  Aligned_cols=112  Identities=18%  Similarity=0.210  Sum_probs=82.4

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccC-cccCCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLP-NFISALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~  191 (228)
                      +..+++|++|++++|...+..|..++.+++|++|++++|.++++|..+.  ++|+.|++++|. ++.++ ..+.++++|+
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~  148 (330)
T 1xku_A           72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMI  148 (330)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCC
T ss_pred             hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCcccc
Confidence            6778888888888884333347788888888888888888888876654  678888888764 44444 3577788888


Q ss_pred             EEeccCCCCCc---ccchhhhcCccccceeccccCCCCCC
Q 038390          192 TLNFSGLLKFR---LFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       192 ~L~l~~c~~l~---~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +|++++| .++   ..|..++.+++|++|++++|.++.+|
T Consensus       149 ~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~  187 (330)
T 1xku_A          149 VVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIP  187 (330)
T ss_dssp             EEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred             EEECCCC-cCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence            8888874 343   44566777888888888888877665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.46  E-value=2.1e-13  Score=103.91  Aligned_cols=104  Identities=20%  Similarity=0.246  Sum_probs=89.2

Q ss_pred             cEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh--cCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEeccC
Q 038390          120 KTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS--IVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSG  197 (228)
Q Consensus       120 ~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~--~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~  197 (228)
                      ++++++++ .++.+|..+..  ++++|++++|.++.++..  ++.+++|++|++++|...+..|..+.++++|++|++++
T Consensus        11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            78999998 78899986654  899999999999999864  89999999999999765444478899999999999999


Q ss_pred             CCCCcccc-hhhhcCccccceeccccCCCCC
Q 038390          198 LLKFRLFP-EIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       198 c~~l~~lp-~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                       +.++.+| ..++.+++|++|++++|.|+.+
T Consensus        88 -N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  117 (192)
T 1w8a_A           88 -NKIKEISNKMFLGLHQLKTLNLYDNQISCV  117 (192)
T ss_dssp             -CCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred             -CcCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence             6677666 5589999999999999999854

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.45  E-value=4.9e-14  Score=127.70  Aligned_cols=118  Identities=17%  Similarity=0.074  Sum_probs=97.7

Q ss_pred             cccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccC
Q 038390          102 RTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLP  181 (228)
Q Consensus       102 l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp  181 (228)
                      +..++..    +..+++|++|+|++| .+..+|..++.+++|++|+|++|.++.+|..++.+++|++|+|++| .++.+|
T Consensus       236 l~~l~~~----~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp  309 (727)
T 4b8c_D          236 IFNISAN----IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLP  309 (727)
T ss_dssp             CSCCCGG----GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCC
T ss_pred             CCCCChh----hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccC
Confidence            3345544    789999999999999 6779999999999999999999999999999999999999999997 578999


Q ss_pred             cccCCCCCCCEEeccCCCCCcccchhhhcCcc-ccceeccccCCC
Q 038390          182 NFISALKFPSTLNFSGLLKFRLFPEIMGCIEH-LLALRLLGTAIR  225 (228)
Q Consensus       182 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~-L~~L~l~~n~l~  225 (228)
                      ..|+.+++|++|+|++|...+.+|..++.+.. +..+++++|.++
T Consensus       310 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~  354 (727)
T 4b8c_D          310 WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE  354 (727)
T ss_dssp             SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc
Confidence            99999999999999995544466777655432 234667777665

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.45  E-value=4.2e-13  Score=112.82  Aligned_cols=112  Identities=14%  Similarity=0.137  Sum_probs=72.1

Q ss_pred             ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCcc-cCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPNF-ISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~  189 (228)
                      +..+++|++|++++| .+..++ ..++.+++|++|++++|.+..+|+ .++.+++|++|++++| .++.+|.. ++++++
T Consensus        65 ~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~  142 (390)
T 3o6n_A           65 LDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPK  142 (390)
T ss_dssp             HHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             hcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCC
Confidence            356677777777776 344443 466777777777777777766643 3567777777777765 35566654 366777


Q ss_pred             CCEEeccCCCCCccc-chhhhcCccccceeccccCCCCC
Q 038390          190 PSTLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       190 L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      |++|++++| .+..+ |..++.+++|++|++++|.++.+
T Consensus       143 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          143 LTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             CcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            777777773 44444 34566777777777777766643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.45  E-value=2e-13  Score=119.54  Aligned_cols=114  Identities=19%  Similarity=0.147  Sum_probs=84.3

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCC-ccCcccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIE-CLPNFISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L  190 (228)
                      +.++++|++|++++|...+..|..++.+++|++|++++|.+..+|+. ++.+++|++|++++|.... ..|..++++++|
T Consensus        46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  125 (549)
T 2z81_A           46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL  125 (549)
T ss_dssp             TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred             hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence            67788888888888843333346778888888888888888877654 7888888888888865332 346677888888


Q ss_pred             CEEeccCCCCCcccc-hhhhcCccccceeccccCCCC
Q 038390          191 STLNFSGLLKFRLFP-EIMGCIEHLLALRLLGTAIRG  226 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n~l~~  226 (228)
                      ++|++++|..++.+| ..++.+++|++|++++|.+++
T Consensus       126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A          126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             cEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            888888866567776 467788888888888887763

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.45  E-value=5e-13  Score=116.32  Aligned_cols=104  Identities=16%  Similarity=0.113  Sum_probs=47.0

Q ss_pred             CCccEEEccCCCCCcccchhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEec
Q 038390          117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNF  195 (228)
Q Consensus       117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l  195 (228)
                      ++|++|++++|...+..|..+..+++|++|++++|.++.+ |..++.+++|++|++++| .++.+|..  .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEec
Confidence            4455555554422222223444455555555555544444 334444555555555543 23344443  4445555555


Q ss_pred             cCCCCCc--ccchhhhcCccccceeccccCC
Q 038390          196 SGLLKFR--LFPEIMGCIEHLLALRLLGTAI  224 (228)
Q Consensus       196 ~~c~~l~--~lp~~~~~l~~L~~L~l~~n~l  224 (228)
                      ++| .+.  .+|..++.+++|++|++++|.+
T Consensus        98 ~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l  127 (520)
T 2z7x_B           98 SFN-AFDALPICKEFGNMSQLKFLGLSTTHL  127 (520)
T ss_dssp             CSS-CCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred             cCC-ccccccchhhhccCCcceEEEecCccc
Confidence            542 222  2344444555555555554444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.44  E-value=4.1e-13  Score=123.57  Aligned_cols=113  Identities=20%  Similarity=0.152  Sum_probs=91.6

Q ss_pred             ccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCccCcc--cCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECLPNF--ISALK  188 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~--~~~l~  188 (228)
                      +.++++|++|++++|.....+ |+.++++++|++|+|++|.+..+ |..++++++|++|++++|.....+|..  +++++
T Consensus        44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~  123 (844)
T 3j0a_A           44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK  123 (844)
T ss_dssp             CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred             CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence            788889999999988666676 67788999999999999988877 778888999999999987655555654  88899


Q ss_pred             CCCEEeccCCCCCccc--chhhhcCccccceeccccCCCC
Q 038390          189 FPSTLNFSGLLKFRLF--PEIMGCIEHLLALRLLGTAIRG  226 (228)
Q Consensus       189 ~L~~L~l~~c~~l~~l--p~~~~~l~~L~~L~l~~n~l~~  226 (228)
                      +|++|++++| .+..+  +..++++++|++|++++|.++.
T Consensus       124 ~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A          124 ALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             SCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             CCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCe
Confidence            9999999984 45443  3578889999999999988864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.44  E-value=6e-14  Score=114.77  Aligned_cols=112  Identities=11%  Similarity=0.070  Sum_probs=91.6

Q ss_pred             cccCCccEEEccCCCCCcccchhhcCC-----CCcceEEccCCcccccc-hhcCCCCCCcEEeccCCCCCCc--cCccc-
Q 038390          114 IFMKSPKTLILSGCSKLKKFPEIVGNM-----KFLRQLLLDGTDIKGLL-LSIVLLSGIVQLNLKGCKNIEC--LPNFI-  184 (228)
Q Consensus       114 ~~l~~L~~L~ls~~~~l~~~p~~~~~l-----~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~--lp~~~-  184 (228)
                      ..+++|++|++++| .+..+|..++.+     ++|++|++++|.+..++ ..++.+++|++|++++|...+.  +|..+ 
T Consensus       118 ~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            78999999999999 566668777777     89999999999999886 6789999999999999875544  34445 


Q ss_pred             -CCCCCCCEEeccCCCCCcccc----hhhhcCccccceeccccCCCCC
Q 038390          185 -SALKFPSTLNFSGLLKFRLFP----EIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       185 -~~l~~L~~L~l~~c~~l~~lp----~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                       +.+++|++|++++ +.++.+|    ..+..+++|+.|++++|.+++.
T Consensus       197 ~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  243 (312)
T 1wwl_A          197 PLKFPTLQVLALRN-AGMETPSGVCSALAAARVQLQGLDLSHNSLRDA  243 (312)
T ss_dssp             TTSCTTCCEEECTT-SCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred             hccCCCCCEEECCC-CcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence             8899999999999 5677443    2346789999999999999863

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.44  E-value=4.7e-13  Score=118.75  Aligned_cols=112  Identities=14%  Similarity=0.137  Sum_probs=74.4

Q ss_pred             ccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCcc-cCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPNF-ISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~  189 (228)
                      +..+++|++|++++|. +..+ |..++.+++|++|++++|.+..+|+. ++.+++|++|++++| .++.+|.. ++++++
T Consensus        71 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~  148 (597)
T 3oja_B           71 LDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPK  148 (597)
T ss_dssp             HHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             HccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCC
Confidence            4556777777777773 4444 34677777777777777777766543 577777777777775 35566654 467777


Q ss_pred             CCEEeccCCCCCccc-chhhhcCccccceeccccCCCCC
Q 038390          190 PSTLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       190 L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      |++|++++| .+..+ |..++.+++|+.|++++|.++.+
T Consensus       149 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          149 LTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             CCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             CCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence            777777774 44443 34577777777777777776654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.43  E-value=4.1e-13  Score=107.72  Aligned_cols=112  Identities=20%  Similarity=0.176  Sum_probs=75.0

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCC-ccCcccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIE-CLPNFISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L  190 (228)
                      +..+++|++|++++|...+..|..+..+++|++|++++|.+..++. .++.+++|+.|++++|.... .+|..++++++|
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L  151 (276)
T 2z62_A           72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL  151 (276)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred             ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC
Confidence            6677888888888884333334667888888888888888877755 57788888888888865332 257778888888


Q ss_pred             CEEeccCCCCCcccc-hhhhcCcccc----ceeccccCCC
Q 038390          191 STLNFSGLLKFRLFP-EIMGCIEHLL----ALRLLGTAIR  225 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp-~~~~~l~~L~----~L~l~~n~l~  225 (228)
                      ++|++++ +.++.+| ..++.+++|+    .|++++|.++
T Consensus       152 ~~L~Ls~-N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~  190 (276)
T 2z62_A          152 EHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN  190 (276)
T ss_dssp             CEEECCS-SCCCEECGGGGHHHHTCTTCCEEEECCSSCCC
T ss_pred             CEEECCC-CCCCcCCHHHhhhhhhccccceeeecCCCccc
Confidence            8888888 4455443 3444444333    4444444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.43  E-value=1.5e-12  Score=107.57  Aligned_cols=110  Identities=20%  Similarity=0.255  Sum_probs=68.5

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      +..+++|++|++++| .+..+| .+..+++|++|++++|.+..+|. +..+++|+.|++++|.....++. +..+++|++
T Consensus        84 ~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~  159 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNY  159 (347)
T ss_dssp             GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCE
T ss_pred             hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcE
Confidence            555666666666666 454544 35666666666666666666654 66666666666666654444433 666677777


Q ss_pred             EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      |++++| .+..++. ++.+++|+.|++++|.++++|
T Consensus       160 L~l~~~-~~~~~~~-~~~l~~L~~L~l~~n~l~~~~  193 (347)
T 4fmz_A          160 LTVTES-KVKDVTP-IANLTDLYSLSLNYNQIEDIS  193 (347)
T ss_dssp             EECCSS-CCCCCGG-GGGCTTCSEEECTTSCCCCCG
T ss_pred             EEecCC-CcCCchh-hccCCCCCEEEccCCcccccc
Confidence            777763 4455544 667777777777777776543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.43  E-value=2e-13  Score=111.62  Aligned_cols=110  Identities=20%  Similarity=0.152  Sum_probs=87.3

Q ss_pred             CCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccc---cchhc--CCCCCCcEEeccCCCCCCcc---Cc-ccCCC
Q 038390          117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKG---LLLSI--VLLSGIVQLNLKGCKNIECL---PN-FISAL  187 (228)
Q Consensus       117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~---lp~~~--~~l~~L~~L~l~~~~~~~~l---p~-~~~~l  187 (228)
                      ++|++|++++|...+..|+.++.+++|++|++++|.+..   +|..+  +.+++|++|++++|. ++.+   +. .+.++
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l  227 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAAR  227 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcC
Confidence            899999999995444445889999999999999998653   35555  889999999999975 5533   32 34578


Q ss_pred             CCCCEEeccCCCCCcccc--hhhhcCccccceeccccCCCCCC
Q 038390          188 KFPSTLNFSGLLKFRLFP--EIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       188 ~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      ++|++|++++ +.++..+  ..+..+++|++|++++|.|+.+|
T Consensus       228 ~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip  269 (312)
T 1wwl_A          228 VQLQGLDLSH-NSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP  269 (312)
T ss_dssp             CCCSEEECTT-SCCCSSCCCSCCCCCTTCCEEECTTSCCSSCC
T ss_pred             CCCCEEECCC-CcCCcccchhhhhhcCCCCEEECCCCccChhh
Confidence            9999999999 4566543  45667899999999999999887

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.43  E-value=7.1e-13  Score=117.37  Aligned_cols=112  Identities=15%  Similarity=0.083  Sum_probs=90.3

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCcc-CcccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECL-PNFISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L  190 (228)
                      +.++++|++|++++|...+..|..++++++|++|++++|.+..+ |..++.+++|++|++++|. +..+ |..++++++|
T Consensus        53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L  131 (606)
T 3t6q_A           53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTL  131 (606)
T ss_dssp             STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTC
T ss_pred             hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccC-cccCCcchhccCCcc
Confidence            78889999999999854455578889999999999999988876 6678899999999999875 4555 6678899999


Q ss_pred             CEEeccCCCCCccc--chhhhcCccccceeccccCCCCC
Q 038390          191 STLNFSGLLKFRLF--PEIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       191 ~~L~l~~c~~l~~l--p~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      ++|++++ +.+..+  |..+ .+++|++|++++|.++.+
T Consensus       132 ~~L~L~~-n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~  168 (606)
T 3t6q_A          132 ESLYLGS-NHISSIKLPKGF-PTEKLKVLDFQNNAIHYL  168 (606)
T ss_dssp             CEEECCS-SCCCCCCCCTTC-CCTTCCEEECCSSCCCEE
T ss_pred             cEEECCC-CcccccCccccc-CCcccCEEEcccCccccc
Confidence            9999998 456654  4444 489999999999988754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.42  E-value=1.9e-13  Score=111.66  Aligned_cols=87  Identities=14%  Similarity=0.032  Sum_probs=41.4

Q ss_pred             cCCCCcceEEccCCcccccchh----cCCCCCCcEEeccCCCCCCccCcccCCC---CCCCEEeccCCCCCcccchhhhc
Q 038390          138 GNMKFLRQLLLDGTDIKGLLLS----IVLLSGIVQLNLKGCKNIECLPNFISAL---KFPSTLNFSGLLKFRLFPEIMGC  210 (228)
Q Consensus       138 ~~l~~L~~L~l~~~~i~~lp~~----~~~l~~L~~L~l~~~~~~~~lp~~~~~l---~~L~~L~l~~c~~l~~lp~~~~~  210 (228)
                      +.+++|++|++++|.++.+|..    ++.+++|++|++++|......|..++.+   ++|++|++++ +.++.+|..+. 
T Consensus       194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~-  271 (310)
T 4glp_A          194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGLP-  271 (310)
T ss_dssp             TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCCC-
T ss_pred             hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC-CCCCchhhhhc-
Confidence            3444455555555544433321    2444555555555543222224444444   3555555555 34445554442 


Q ss_pred             CccccceeccccCCCCC
Q 038390          211 IEHLLALRLLGTAIRGL  227 (228)
Q Consensus       211 l~~L~~L~l~~n~l~~l  227 (228)
                       ++|+.|++++|.|+++
T Consensus       272 -~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          272 -AKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             -SCCSCEECCSCCCCSC
T ss_pred             -CCCCEEECCCCcCCCC
Confidence             4555555555555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.42  E-value=1.7e-12  Score=107.18  Aligned_cols=109  Identities=15%  Similarity=0.244  Sum_probs=83.3

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      +..+++|++|++++| .+..+|. +..+++|++|++++|.+..+| .+..+++|++|++++|. +..+|. +..+++|++
T Consensus        62 ~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~  136 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYS  136 (347)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCE
T ss_pred             hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc-ccCchh-hccCCceeE
Confidence            677888888888887 5666666 778888888888888887775 57788888888888764 556665 778888888


Q ss_pred             EeccCCCCCcccchhhhcCccccceeccccCCCCC
Q 038390          193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      |++++|.....++. ++.+++|++|++++|.+..+
T Consensus       137 L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~  170 (347)
T 4fmz_A          137 LNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDV  170 (347)
T ss_dssp             EECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred             EECCCCCCcccccc-hhhCCCCcEEEecCCCcCCc
Confidence            88888666665554 77888888888888877654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.42  E-value=6.9e-13  Score=117.46  Aligned_cols=113  Identities=18%  Similarity=0.193  Sum_probs=89.2

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCcc-CcccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECL-PNFISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L  190 (228)
                      +.++++|++|++++|...+..|..++.+++|++|++++|.+..+ |..++.+++|++|++++|. +..+ ++.+..+++|
T Consensus        77 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L  155 (606)
T 3t6q_A           77 FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKL  155 (606)
T ss_dssp             TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTC
T ss_pred             ccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCccc
Confidence            77889999999999855555577888999999999999998887 5678889999999999875 4443 2334458999


Q ss_pred             CEEeccCCCCCccc-chhhhcCcccc--ceeccccCCCCC
Q 038390          191 STLNFSGLLKFRLF-PEIMGCIEHLL--ALRLLGTAIRGL  227 (228)
Q Consensus       191 ~~L~l~~c~~l~~l-p~~~~~l~~L~--~L~l~~n~l~~l  227 (228)
                      ++|++++ +.++.+ |..++.+++|+  .|++++|.++.+
T Consensus       156 ~~L~L~~-n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~  194 (606)
T 3t6q_A          156 KVLDFQN-NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI  194 (606)
T ss_dssp             CEEECCS-SCCCEECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred             CEEEccc-CcccccChhhhhhhcccceeEEecCCCccCcc
Confidence            9999998 455555 56788888888  888999988754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.41  E-value=1.4e-12  Score=114.72  Aligned_cols=104  Identities=19%  Similarity=0.231  Sum_probs=63.7

Q ss_pred             CCccEEEccCCCCCccc-chhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEe
Q 038390          117 KSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLN  194 (228)
Q Consensus       117 ~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~  194 (228)
                      ++|++|++++|. +..+ |..++.+++|++|++++|.++.+ |..++.+++|++|++++|. ++.+|..  .+++|++|+
T Consensus        52 ~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           52 PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLD  127 (562)
T ss_dssp             TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEE
T ss_pred             CCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCEEE
Confidence            566666666663 3333 34666666666666666666665 4456666666666666643 4566654  566666666


Q ss_pred             ccCCCCCccc--chhhhcCccccceeccccCCC
Q 038390          195 FSGLLKFRLF--PEIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       195 l~~c~~l~~l--p~~~~~l~~L~~L~l~~n~l~  225 (228)
                      +++ +.+..+  |..++.+++|++|++++|.++
T Consensus       128 Ls~-N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          128 LSF-NDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             CCS-SCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CCC-CCccccCchHhhcccCcccEEecCCCccc
Confidence            666 344443  356666666666666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.41  E-value=1.5e-12  Score=115.55  Aligned_cols=109  Identities=24%  Similarity=0.264  Sum_probs=73.2

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      +..+++|+.|+|++| .+..+| .+..+++|+.|+|++|.+..+| .+..+++|+.|+|++|. +..+ ..++.+++|+.
T Consensus        83 l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~  157 (605)
T 1m9s_A           83 LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDT  157 (605)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSE
T ss_pred             hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCE
Confidence            556666777777766 455554 4666777777777777776654 46667777777777753 4445 44677777777


Q ss_pred             EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      |+|++ +.+..+++ +..+++|+.|+|++|.|+.+|
T Consensus       158 L~Ls~-N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~  191 (605)
T 1m9s_A          158 LSLED-NQISDIVP-LAGLTKLQNLYLSKNHISDLR  191 (605)
T ss_dssp             EECCS-SCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred             EECcC-CcCCCchh-hccCCCCCEEECcCCCCCCCh
Confidence            77777 45555555 777788888888888776553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.41  E-value=6.4e-13  Score=111.71  Aligned_cols=113  Identities=14%  Similarity=0.229  Sum_probs=97.2

Q ss_pred             ccccCCccEEEccCCCCCcccchh-hcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCcc-CcccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEI-VGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECL-PNFISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~  189 (228)
                      -..+++++.|++++| .++.+|.. +..+++|++|++++|.+..+|. .+..+++|++|++++|. ++.+ |..++++++
T Consensus        41 ~~~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~  118 (390)
T 3o6n_A           41 DITLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPL  118 (390)
T ss_dssp             SGGGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred             ccccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCC
Confidence            346789999999998 67788765 6889999999999999998865 78999999999999976 5555 556899999


Q ss_pred             CCEEeccCCCCCcccchh-hhcCccccceeccccCCCCCC
Q 038390          190 PSTLNFSGLLKFRLFPEI-MGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       190 L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      |++|++++ +.++.+|.. ++.+++|++|++++|.++.+|
T Consensus       119 L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  157 (390)
T 3o6n_A          119 LTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNNNLERIE  157 (390)
T ss_dssp             CCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CCEEECCC-CccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence            99999999 578888876 589999999999999998654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=2.1e-15  Score=115.54  Aligned_cols=116  Identities=23%  Similarity=0.184  Sum_probs=89.4

Q ss_pred             ccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCcc
Q 038390          101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECL  180 (228)
Q Consensus       101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l  180 (228)
                      .++.++..    +..+++|++|++++| .+..+| .+..+++|++|++++|.+..+|..+..+++|+.|++++| .++.+
T Consensus        36 ~l~~l~~~----~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l  108 (198)
T 1ds9_A           36 PIEKMDAT----LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASL  108 (198)
T ss_dssp             TCCCCHHH----HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCH
T ss_pred             cHhhhhHH----HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcC
Confidence            45556655    788888888888887 566677 778888888888888888888877777788888888886 45666


Q ss_pred             CcccCCCCCCCEEeccCCCCCcccch--hhhcCccccceeccccCCC
Q 038390          181 PNFISALKFPSTLNFSGLLKFRLFPE--IMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       181 p~~~~~l~~L~~L~l~~c~~l~~lp~--~~~~l~~L~~L~l~~n~l~  225 (228)
                      | .++.+++|++|++++ +.++.+|.  .++.+++|++|++++|.++
T Consensus       109 ~-~~~~l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          109 S-GIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             H-HHHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             C-ccccCCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            6 477788888888888 56666654  6778888888888888663

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.41  E-value=5.9e-13  Score=116.48  Aligned_cols=119  Identities=19%  Similarity=0.196  Sum_probs=98.6

Q ss_pred             cccccccccccccccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCcccccc-hhcCCCCCCcEEeccCCCCC
Q 038390          100 HSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGLL-LSIVLLSGIVQLNLKGCKNI  177 (228)
Q Consensus       100 ~~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~  177 (228)
                      ..++.+|..    +.  ++|++|++++|. +..+ |..++.+++|++|++++|.+..++ ..++.+++|++|++++|. +
T Consensus        15 ~~l~~ip~~----~~--~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l   86 (549)
T 2z81_A           15 RSFTSIPSG----LT--AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-L   86 (549)
T ss_dssp             SCCSSCCSC----CC--TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-C
T ss_pred             Ccccccccc----CC--CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-c
Confidence            356777764    43  789999999995 5554 678999999999999999999886 578999999999999975 5


Q ss_pred             CccCc-ccCCCCCCCEEeccCCCCCc--ccchhhhcCccccceeccccC-CCCC
Q 038390          178 ECLPN-FISALKFPSTLNFSGLLKFR--LFPEIMGCIEHLLALRLLGTA-IRGL  227 (228)
Q Consensus       178 ~~lp~-~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~n~-l~~l  227 (228)
                      ..+|. .++++++|++|++++| .++  ..|..++.+++|++|++++|. +..+
T Consensus        87 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~  139 (549)
T 2z81_A           87 SSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEI  139 (549)
T ss_dssp             CSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred             CccCHHHhccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCcccccc
Confidence            55655 5999999999999995 565  457789999999999999998 4444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.41  E-value=1.3e-12  Score=116.10  Aligned_cols=109  Identities=18%  Similarity=0.198  Sum_probs=78.3

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      +..+++|+.|+|++| .+..++ .+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|. +..+++ +..+++|+.
T Consensus       105 l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~  179 (605)
T 1m9s_A          105 LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQN  179 (605)
T ss_dssp             STTCTTCCEEECTTS-CCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCE
T ss_pred             hccCCCCCEEEecCC-CCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh-hccCCCCCE
Confidence            667777888888877 455554 367778888888888877777 467777888888888764 455544 777788888


Q ss_pred             EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      |+|++ +.+..+| .+..+++|+.|+|++|.+...|
T Consensus       180 L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          180 LYLSK-NHISDLR-ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             EECCS-SCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred             EECcC-CCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence            88887 4566665 4677788888888888766543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.40  E-value=1.3e-12  Score=114.94  Aligned_cols=112  Identities=19%  Similarity=0.213  Sum_probs=69.7

Q ss_pred             ccccCCccEEEccCCCCCccc---chhhcCCCCcceEEccCCcccc-cchh-cCCCCCCcEEeccCCCCCCccCcccCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKF---PEIVGNMKFLRQLLLDGTDIKG-LLLS-IVLLSGIVQLNLKGCKNIECLPNFISAL  187 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~---p~~~~~l~~L~~L~l~~~~i~~-lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l  187 (228)
                      +..+++|++|++++| .+..+   |..++.+++|++|++++|.+.. +|.. +..+++|+.|++++|...+..|..+.  
T Consensus       373 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--  449 (562)
T 3a79_B          373 CSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--  449 (562)
T ss_dssp             CCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--
T ss_pred             hcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--
Confidence            566777777777777 44433   3456777777777777777765 6543 45566666666666543333343322  


Q ss_pred             CCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          188 KFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       188 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      ++|+.|++++ +.++.+|..+..+++|+.|++++|.|+.+|
T Consensus       450 ~~L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~  489 (562)
T 3a79_B          450 PKVKVLDLHN-NRIMSIPKDVTHLQALQELNVASNQLKSVP  489 (562)
T ss_dssp             TTCSEEECCS-SCCCCCCTTTTSSCCCSEEECCSSCCCCCC
T ss_pred             CcCCEEECCC-CcCcccChhhcCCCCCCEEECCCCCCCCCC
Confidence            4666666666 356666666666667777777777666655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.40  E-value=7.4e-13  Score=108.47  Aligned_cols=110  Identities=13%  Similarity=0.015  Sum_probs=72.6

Q ss_pred             ccccCCccEEEccCCCCCcccchhh-cCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIV-GNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~-~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~  191 (228)
                      +..+++|++|++++|......|..+ +.+++|++|++++|.++.+|.. ..+++|+.|++++| .++.+|..+..+++|+
T Consensus       140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~  217 (317)
T 3o53_A          140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVT  217 (317)
T ss_dssp             TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSS-CCCEECGGGGGGTTCS
T ss_pred             hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCC-cCCcchhhhcccCccc
Confidence            4556677777777763222233433 3567777777777777666533 34677777777775 4566666677777777


Q ss_pred             EEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390          192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  225 (228)
                      .|++++ +.++.+|..++.+++|+.|++++|.++
T Consensus       218 ~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          218 WISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             EEECTT-SCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             EEECcC-CcccchhhHhhcCCCCCEEEccCCCcc
Confidence            777777 466677777777777777777777765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.40  E-value=9e-13  Score=115.69  Aligned_cols=112  Identities=18%  Similarity=0.218  Sum_probs=73.1

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccc--ccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIK--GLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L  190 (228)
                      +..+++|++|++++|...+..|..+..+++|++|++++|.+.  .+|..+..+++|+.|++++|......|..++.+++|
T Consensus       417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  496 (570)
T 2z63_A          417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  496 (570)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence            445566666666666444445566666777777777777665  466667777777777777765433336667777777


Q ss_pred             CEEeccCCCCCcccc-hhhhcCccccceeccccCCC
Q 038390          191 STLNFSGLLKFRLFP-EIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n~l~  225 (228)
                      ++|++++| .++.+| ..++.+++|+.|++++|.++
T Consensus       497 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          497 QVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCccc
Confidence            77777774 455444 45677777777777777765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.40  E-value=1.2e-12  Score=116.20  Aligned_cols=110  Identities=13%  Similarity=0.128  Sum_probs=86.6

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPNFISALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~  191 (228)
                      +..+++|++|+|++|...+..|..++.+++|++|++++|.+..+|.. ++.+++|++|++++|......|..++.+++|+
T Consensus        95 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  174 (597)
T 3oja_B           95 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ  174 (597)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCc
Confidence            78899999999999954444455679999999999999999999877 48999999999999865444456789999999


Q ss_pred             EEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390          192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  225 (228)
                      +|++++ +.+..+|  ++.+++|+.|++++|.++
T Consensus       175 ~L~L~~-N~l~~~~--~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          175 NLQLSS-NRLTHVD--LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             EEECTT-SCCSBCC--GGGCTTCSEEECCSSCCS
T ss_pred             EEECcC-CCCCCcC--hhhhhhhhhhhcccCccc
Confidence            999999 5666665  444566666665555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.39  E-value=4.4e-13  Score=110.38  Aligned_cols=114  Identities=17%  Similarity=0.170  Sum_probs=80.6

Q ss_pred             ccccCCccEEEccCCCCC--cccchhhcCC--------------------CCcceEEccCCcccccc-hhcCCCCCCcEE
Q 038390          113 LIFMKSPKTLILSGCSKL--KKFPEIVGNM--------------------KFLRQLLLDGTDIKGLL-LSIVLLSGIVQL  169 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l--~~~p~~~~~l--------------------~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L  169 (228)
                      +..+++|++|++++|..-  +..|..++.+                    ++|++|++++|.+..++ ..+..+++|+.|
T Consensus       143 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  222 (332)
T 2ft3_A          143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRL  222 (332)
T ss_dssp             GSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCC
T ss_pred             hCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            566777888888877331  1234444333                    35666666666666654 467778888888


Q ss_pred             eccCCCCCCcc-CcccCCCCCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          170 NLKGCKNIECL-PNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       170 ~l~~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      ++++|. ++.+ |..++.+++|+.|++++ +.++.+|..++.+++|+.|++++|.|+.+|
T Consensus       223 ~L~~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~  280 (332)
T 2ft3_A          223 GLGHNQ-IRMIENGSLSFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHTNNITKVG  280 (332)
T ss_dssp             BCCSSC-CCCCCTTGGGGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred             ECCCCc-CCcCChhHhhCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCCCCCCccC
Confidence            888865 4444 44678888888888888 567788888888888899999888888664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.39  E-value=1.9e-12  Score=106.49  Aligned_cols=111  Identities=17%  Similarity=0.298  Sum_probs=72.7

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCc-ccCCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPN-FISALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~  191 (228)
                      +..+++|++|++++|...+..|..++.+++|++|++++|.+..+|..+.  ++|++|++++|. ++.+|. .+.++++|+
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~  150 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMN  150 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCC
T ss_pred             hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCC
Confidence            6677778888887774333336677777788888888887777776555  677777777754 455544 467777788


Q ss_pred             EEeccCCCCCc---ccchhhhcCccccceeccccCCCCCC
Q 038390          192 TLNFSGLLKFR---LFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       192 ~L~l~~c~~l~---~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +|++++| .++   ..|..++.+ +|+.|++++|.++.+|
T Consensus       151 ~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~  188 (332)
T 2ft3_A          151 CIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAKLTGIP  188 (332)
T ss_dssp             EEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred             EEECCCC-ccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence            8887773 343   334455555 5666666666655544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.39  E-value=1.4e-12  Score=112.42  Aligned_cols=113  Identities=16%  Similarity=0.136  Sum_probs=56.1

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccC-cccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLP-NFISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L  190 (228)
                      +..+++|+.|++++|..++.+|.......+|++|++++|.++.+|. .+..+++|+.|++++|. +..++ ..+..+++|
T Consensus       196 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L  274 (477)
T 2id5_A          196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRL  274 (477)
T ss_dssp             SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTC
T ss_pred             cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccChhhccccccC
Confidence            4445555555555555445444444444455555555555555542 34555555555555543 23332 234455555


Q ss_pred             CEEeccCCCCCccc-chhhhcCccccceeccccCCCCC
Q 038390          191 STLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       191 ~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      +.|++++| .+..+ |..+..+++|+.|++++|.|+.+
T Consensus       275 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  311 (477)
T 2id5_A          275 QEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTL  311 (477)
T ss_dssp             CEEECCSS-CCSEECTTTBTTCTTCCEEECCSSCCSCC
T ss_pred             CEEECCCC-ccceECHHHhcCcccCCEEECCCCcCcee
Confidence            55555552 23322 34455555555555555555443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.39  E-value=1.5e-12  Score=112.04  Aligned_cols=100  Identities=16%  Similarity=0.131  Sum_probs=82.9

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      +..+++|++|++++| .+..+|  ++.+++|++|++++|.++.+|  ++.+++|++|++++|. ++.+|  ++.+++|++
T Consensus        60 l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~  131 (457)
T 3bz5_A           60 IEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTY  131 (457)
T ss_dssp             GGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCE
T ss_pred             hcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCE
Confidence            788889999999988 576676  788889999999999888876  7888999999999864 56665  788899999


Q ss_pred             EeccCCCCCcccchhhhcCccccceeccccC
Q 038390          193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTA  223 (228)
Q Consensus       193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~  223 (228)
                      |++++ +.++.+|  ++.+++|+.|++++|.
T Consensus       132 L~l~~-N~l~~l~--l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A          132 LNCAR-NTLTEID--VSHNTQLTELDCHLNK  159 (457)
T ss_dssp             EECTT-SCCSCCC--CTTCTTCCEEECTTCS
T ss_pred             EECCC-Cccceec--cccCCcCCEEECCCCC
Confidence            99998 5667665  7788899999999884

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.39  E-value=1.2e-12  Score=113.59  Aligned_cols=110  Identities=13%  Similarity=0.009  Sum_probs=57.4

Q ss_pred             ccccCCccEEEccCCCCCcccchhhc-CCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVG-NMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~-~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~  191 (228)
                      ++.+++|++|++++|...+..|..+. .+++|++|++++|.++.+|. ...+++|+.|++++| .++.+|+.++.+++|+
T Consensus       140 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~  217 (487)
T 3oja_A          140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVT  217 (487)
T ss_dssp             GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSS-CCCEECGGGGGGTTCS
T ss_pred             hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCC-CCCCCCHhHcCCCCcc
Confidence            34455555555555532233343333 45555555555555555543 223555555555554 3444555555555666


Q ss_pred             EEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390          192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  225 (228)
                      .|++++ +.+..+|..++.+++|+.|++++|.+.
T Consensus       218 ~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          218 WISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EEECTT-SCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             EEEecC-CcCcccchhhccCCCCCEEEcCCCCCc
Confidence            666655 445555555555556666666665544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.38  E-value=4.2e-12  Score=113.93  Aligned_cols=113  Identities=17%  Similarity=0.179  Sum_probs=81.2

Q ss_pred             ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch---------hcCCCCCCcEEeccCCCCCCccCc
Q 038390          113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL---------SIVLLSGIVQLNLKGCKNIECLPN  182 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~---------~~~~l~~L~~L~l~~~~~~~~lp~  182 (228)
                      +..+++|++|++++| .+..+| ..++.+++|++|++++|.+..++.         .++.+++|+.|++++| .++.+|.
T Consensus       476 ~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~  553 (680)
T 1ziw_A          476 FQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV  553 (680)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred             cccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCH
Confidence            667778888888887 444444 457778888888888887776532         2567778888888875 4556765


Q ss_pred             -ccCCCCCCCEEeccCCCCCcccchh-hhcCccccceeccccCCCCCC
Q 038390          183 -FISALKFPSTLNFSGLLKFRLFPEI-MGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       183 -~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~n~l~~lP  228 (228)
                       .+.++++|+.|++++ +.++.+|.. +..+++|+.|++++|.|+.+|
T Consensus       554 ~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~  600 (680)
T 1ziw_A          554 EVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKNLITSVE  600 (680)
T ss_dssp             TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             HHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence             467788888888877 567777754 577788888888888877654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.37  E-value=1.3e-12  Score=113.36  Aligned_cols=113  Identities=13%  Similarity=0.011  Sum_probs=95.7

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccccc-chhcC-CCCCCcEEeccCCCCCCccCcccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSIV-LLSGIVQLNLKGCKNIECLPNFISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~-~l~~L~~L~l~~~~~~~~lp~~~~~l~~L  190 (228)
                      ...+++|+.|++++|...+..|..++.+++|++|++++|.+..+ |..+. .+++|+.|++++|. ++.+|. ...+++|
T Consensus       116 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~-~~~l~~L  193 (487)
T 3oja_A          116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKL  193 (487)
T ss_dssp             ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTTC
T ss_pred             ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc-cccCCCC
Confidence            44578999999999954455577889999999999999999875 55665 79999999999975 666655 4469999


Q ss_pred             CEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          191 STLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +.|++++ +.++.+|+.++.+++|+.|++++|.|+.+|
T Consensus       194 ~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp  230 (487)
T 3oja_A          194 KTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNKLVLIE  230 (487)
T ss_dssp             CEEECCS-SCCCEECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred             CEEECCC-CCCCCCCHhHcCCCCccEEEecCCcCcccc
Confidence            9999999 678889888999999999999999998766

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.37  E-value=4.2e-12  Score=95.19  Aligned_cols=106  Identities=19%  Similarity=0.289  Sum_probs=89.0

Q ss_pred             CccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCc-ccCCCCCCCEEec
Q 038390          118 SPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPN-FISALKFPSTLNF  195 (228)
Q Consensus       118 ~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l  195 (228)
                      +.+.++++++ .+..+|..+.  ++|++|++++|.++.+|.. ++.+++|++|++++|. ++.+|. .+..+++|++|++
T Consensus         8 ~~~~l~~~~~-~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            8 SGTEIRCNSK-GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             ETTEEECCSS-CCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEecCC-CCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEEC
Confidence            3578888887 6888886543  6899999999999998765 6889999999999974 667765 4689999999999


Q ss_pred             cCCCCCcccch-hhhcCccccceeccccCCCCCC
Q 038390          196 SGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       196 ~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      ++ +.++.+|. .++.+++|++|++++|.|+.+|
T Consensus        84 ~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  116 (177)
T 2o6r_A           84 HE-NKLQSLPNGVFDKLTQLKELALDTNQLKSVP  116 (177)
T ss_dssp             CS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CC-CCccccCHHHhhCCcccCEEECcCCcceEeC
Confidence            99 67777775 5789999999999999998876

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.37  E-value=5.1e-13  Score=109.09  Aligned_cols=114  Identities=19%  Similarity=0.120  Sum_probs=84.2

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccc---cchh--cCCCCCCcEEeccCCCCCCccCcc----
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKG---LLLS--IVLLSGIVQLNLKGCKNIECLPNF----  183 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~---lp~~--~~~l~~L~~L~l~~~~~~~~lp~~----  183 (228)
                      +..+++|++|++++|......|..++.+++|++|++++|.+..   ++..  ++.+++|++|++++|. ++.+|..    
T Consensus       141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l  219 (310)
T 4glp_A          141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAAL  219 (310)
T ss_dssp             TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHH
T ss_pred             hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHH
Confidence            3457888888888885444445678888889999998887653   4332  3678888889988864 5555542    


Q ss_pred             cCCCCCCCEEeccCCCCCccc-chhhhcC---ccccceeccccCCCCCC
Q 038390          184 ISALKFPSTLNFSGLLKFRLF-PEIMGCI---EHLLALRLLGTAIRGLP  228 (228)
Q Consensus       184 ~~~l~~L~~L~l~~c~~l~~l-p~~~~~l---~~L~~L~l~~n~l~~lP  228 (228)
                      ++.+++|++|++++ +.++.+ |+.++.+   ++|++|++++|.|+.+|
T Consensus       220 ~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp  267 (310)
T 4glp_A          220 AAAGVQPHSLDLSH-NSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP  267 (310)
T ss_dssp             HHHTCCCSSEECTT-SCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC
T ss_pred             HhcCCCCCEEECCC-CCCCccchhhHHhccCcCcCCEEECCCCCCCchh
Confidence            46778899999998 455554 7777766   68999999999998876

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=99.37  E-value=2.8e-14  Score=105.06  Aligned_cols=61  Identities=16%  Similarity=0.250  Sum_probs=56.7

Q ss_pred             CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHHhcC--------------chhhhhccccHHHHHHH
Q 038390            1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKN--------------TSLVRKHIGSFQEAIVN   61 (228)
Q Consensus         1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c~~--------------ps~vr~q~g~f~~af~~   61 (228)
                      |+.|.+++.+||++|+++|+|+|++|+.|.||++|+..+++|..              |++||+|+|.|+++|..
T Consensus        60 G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~  134 (154)
T 3h16_A           60 GDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAF  134 (154)
T ss_dssp             TCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCE
T ss_pred             ccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhh
Confidence            78899999999999999999999999999999999999999864              99999999999886653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.36  E-value=4.7e-12  Score=108.90  Aligned_cols=105  Identities=17%  Similarity=0.040  Sum_probs=62.5

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      ++.+++|++|++++| .+..+|  ++.+++|++|++++|.++.+|  ++.+++|++|++++|. ++.++  ++.+++|++
T Consensus        81 ~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~  152 (457)
T 3bz5_A           81 LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTE  152 (457)
T ss_dssp             CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCE
T ss_pred             cccCCCCCEEECcCC-CCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCE
Confidence            566677777777776 455554  666777777777777766665  6666677777776653 34443  555555666


Q ss_pred             EeccCCCCCcccchhhhcCccccceeccccCCCCC
Q 038390          193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      |++++|..++.++  ++.+++|+.|++++|.++++
T Consensus       153 L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~l  185 (457)
T 3bz5_A          153 LDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL  185 (457)
T ss_dssp             EECTTCSCCCCCC--CTTCTTCCEEECCSSCCCCC
T ss_pred             EECCCCCcccccc--cccCCcCCEEECCCCcccee
Confidence            6655544444442  44455555555555555444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.35  E-value=2e-12  Score=118.99  Aligned_cols=120  Identities=17%  Similarity=0.030  Sum_probs=98.5

Q ss_pred             ccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCC-ccccc-chhcCCCCCCcEEeccCCCCCC
Q 038390          101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGT-DIKGL-LLSIVLLSGIVQLNLKGCKNIE  178 (228)
Q Consensus       101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~-~i~~l-p~~~~~l~~L~~L~l~~~~~~~  178 (228)
                      +++.+|.       -.++|++|+|++|..-+..|..+.++++|++|++++| .+..+ |..++++++|++|+|++|....
T Consensus        15 ~L~~vP~-------lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~   87 (844)
T 3j0a_A           15 NLTQVPQ-------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF   87 (844)
T ss_dssp             CSSCCCS-------SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred             CCCCCCC-------CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence            4555653       3468999999999544445788999999999999999 55677 6789999999999999986555


Q ss_pred             ccCcccCCCCCCCEEeccCCCCCcccchh--hhcCccccceeccccCCCCC
Q 038390          179 CLPNFISALKFPSTLNFSGLLKFRLFPEI--MGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       179 ~lp~~~~~l~~L~~L~l~~c~~l~~lp~~--~~~l~~L~~L~l~~n~l~~l  227 (228)
                      ..|..++++++|++|++++|.....+|..  ++.+++|++|++++|.++++
T Consensus        88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~  138 (844)
T 3j0a_A           88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL  138 (844)
T ss_dssp             ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC
T ss_pred             cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc
Confidence            55889999999999999996544456655  89999999999999999865

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.35  E-value=2.3e-12  Score=105.55  Aligned_cols=112  Identities=14%  Similarity=0.045  Sum_probs=90.9

Q ss_pred             ccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCcccccc-hhc-CCCCCCcEEeccCCCCCCccCcccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGLL-LSI-VLLSGIVQLNLKGCKNIECLPNFISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~lp-~~~-~~l~~L~~L~l~~~~~~~~lp~~~~~l~~  189 (228)
                      ...+++|++|++++| .+..+ |..++.+++|++|++++|.+..++ ..+ ..+++|++|++++|. ++.+|. ...+++
T Consensus       116 ~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~l~~  192 (317)
T 3o53_A          116 CSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAK  192 (317)
T ss_dssp             ECCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTT
T ss_pred             ccccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccc-cccccc
Confidence            345677888888888 45444 557888999999999999998764 444 478999999999974 666765 345899


Q ss_pred             CCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          190 PSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       190 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      |++|++++ +.++.+|+.+..+++|+.|++++|.|+.+|
T Consensus       193 L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~  230 (317)
T 3o53_A          193 LKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNKLVLIE  230 (317)
T ss_dssp             CCEEECCS-SCCCEECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred             CCEEECCC-CcCCcchhhhcccCcccEEECcCCcccchh
Confidence            99999999 678899888999999999999999998765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.34  E-value=4.5e-12  Score=104.91  Aligned_cols=101  Identities=16%  Similarity=0.109  Sum_probs=53.5

Q ss_pred             EEccCCCCCcccchhhcCCCCcceEEccC-Ccccccc-hhcCCCCCCcEEeccCCCCCCcc-CcccCCCCCCCEEeccCC
Q 038390          122 LILSGCSKLKKFPEIVGNMKFLRQLLLDG-TDIKGLL-LSIVLLSGIVQLNLKGCKNIECL-PNFISALKFPSTLNFSGL  198 (228)
Q Consensus       122 L~ls~~~~l~~~p~~~~~l~~L~~L~l~~-~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~c  198 (228)
                      ++.++++.+..+|. ++.+++|++|+|++ |.+..+| ..++.|++|+.|+|++|. ++.+ |..|.++++|+.|+|++ 
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~-   89 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF-   89 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS-
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC-
Confidence            34444434555555 55556666666654 5665554 345556666666666543 3333 33455566666666665 


Q ss_pred             CCCcccchhhhcCccccceeccccCCC
Q 038390          199 LKFRLFPEIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       199 ~~l~~lp~~~~~l~~L~~L~l~~n~l~  225 (228)
                      |.++.+|..+.....|+.|+|.+|.+.
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CccceeCHHHcccCCceEEEeeCCCcc
Confidence            455555543222222666666666554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.29  E-value=2.4e-11  Score=104.48  Aligned_cols=58  Identities=17%  Similarity=0.279  Sum_probs=24.7

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKG  173 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~  173 (228)
                      +..+++|++|++++| .+..++. +..+++|++|++++|.+..+|. +..+++|+.|++++
T Consensus       239 l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~  296 (466)
T 1o6v_A          239 LASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNE  296 (466)
T ss_dssp             GGGCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCS
T ss_pred             hhcCCCCCEEECCCC-ccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCC
Confidence            334444444444444 2333322 3444444444444444444433 34444444444444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.29  E-value=1.6e-11  Score=105.68  Aligned_cols=109  Identities=17%  Similarity=0.164  Sum_probs=55.6

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      +..+++|+.|++++| .+..++. ++.+++|++|++++|.+..+++ +..+++|+.|++++|. +..++ .+..+++|+.
T Consensus       283 ~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~  357 (466)
T 1o6v_A          283 LAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINW  357 (466)
T ss_dssp             GTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCE
T ss_pred             ccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc-cCCch-hhccCCCCCE
Confidence            334444555555544 3333333 4445555555555555554443 4455555555555542 33332 3555666666


Q ss_pred             EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      |++++| .+..+++ ++.+++|+.|++++|.++.+|
T Consensus       358 L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~~~~~p  391 (466)
T 1o6v_A          358 LSAGHN-QISDLTP-LANLTRITQLGLNDQAWTNAP  391 (466)
T ss_dssp             EECCSS-CCCBCGG-GTTCTTCCEEECCCEEEECCC
T ss_pred             EeCCCC-ccCccch-hhcCCCCCEEeccCCcccCCc
Confidence            666663 3343333 556666666666666655543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.28  E-value=2.7e-12  Score=105.56  Aligned_cols=111  Identities=19%  Similarity=0.199  Sum_probs=61.4

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCC-ccc--ccchhcCCCCCCcEEeccCCCCCCc--cCcccCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGT-DIK--GLLLSIVLLSGIVQLNLKGCKNIEC--LPNFISAL  187 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~-~i~--~lp~~~~~l~~L~~L~l~~~~~~~~--lp~~~~~l  187 (228)
                      +..+++|++|++++|......|..++.+++|++|++++| .++  .+|..+..+++|+.|++++|..++.  ++..+..+
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l  193 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  193 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence            445556666666665333344555555666666666665 444  2454455566666666666533332  34445556


Q ss_pred             C-CCCEEeccCCC-CC--cccchhhhcCccccceeccccC
Q 038390          188 K-FPSTLNFSGLL-KF--RLFPEIMGCIEHLLALRLLGTA  223 (228)
Q Consensus       188 ~-~L~~L~l~~c~-~l--~~lp~~~~~l~~L~~L~l~~n~  223 (228)
                      + +|++|++++|. .+  ..+|..++.+++|+.|++++|.
T Consensus       194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence            6 66666666643 22  3455555666666666666665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.27  E-value=2.1e-11  Score=104.72  Aligned_cols=104  Identities=18%  Similarity=0.226  Sum_probs=51.6

Q ss_pred             CCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccch-------------------hcCCCCCCcEEeccCCCCC
Q 038390          117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLL-------------------SIVLLSGIVQLNLKGCKNI  177 (228)
Q Consensus       117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~-------------------~~~~l~~L~~L~l~~~~~~  177 (228)
                      ++|++|++++| .+..+| .++.+++|++|++++|.++.+|.                   .++.+++|+.|++++|. +
T Consensus       131 ~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~-l  207 (454)
T 1jl5_A          131 PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS-L  207 (454)
T ss_dssp             TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC-C
T ss_pred             CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCc-C
Confidence            35555555555 344455 35555555555555555554443                   24444444444444432 2


Q ss_pred             CccCcccCCCCCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          178 ECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       178 ~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +.+|...   ++|++|++++ +.++.+|+ ++.+++|++|++++|.++.+|
T Consensus       208 ~~l~~~~---~~L~~L~l~~-n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~  253 (454)
T 1jl5_A          208 KKLPDLP---LSLESIVAGN-NILEELPE-LQNLPFLTTIYADNNLLKTLP  253 (454)
T ss_dssp             SSCCCCC---TTCCEEECCS-SCCSSCCC-CTTCTTCCEEECCSSCCSSCC
T ss_pred             CcCCCCc---CcccEEECcC-CcCCcccc-cCCCCCCCEEECCCCcCCccc
Confidence            2233211   2444444444 23445553 566666666666666666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.27  E-value=2.4e-11  Score=107.02  Aligned_cols=98  Identities=22%  Similarity=0.276  Sum_probs=65.3

Q ss_pred             cCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEec
Q 038390          116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNF  195 (228)
Q Consensus       116 l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l  195 (228)
                      +++|++|++++| .+..+|. +..  +|++|++++|.++.+|.   .+++|+.|++++|. ++.+|.   .+++|+.|++
T Consensus        99 l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~L  167 (571)
T 3cvr_A           99 PASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSV  167 (571)
T ss_dssp             CTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEEC
T ss_pred             cCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEEC
Confidence            456666677666 4555665 443  66777777777666665   56677777777653 455665   4567777777


Q ss_pred             cCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          196 SGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       196 ~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      ++ |.++.+|. ++  ++|+.|+|++|.|+.+|
T Consensus       168 s~-N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp  196 (571)
T 3cvr_A          168 RN-NQLTFLPE-LP--ESLEALDVSTNLLESLP  196 (571)
T ss_dssp             CS-SCCSCCCC-CC--TTCCEEECCSSCCSSCC
T ss_pred             CC-CCCCCcch-hh--CCCCEEECcCCCCCchh
Confidence            77 45666776 54  77788888888777765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.26  E-value=3.4e-12  Score=107.17  Aligned_cols=112  Identities=15%  Similarity=0.137  Sum_probs=92.2

Q ss_pred             ccccCCccEEEccCCCCCc------ccchhhcCCCCcceEEccCCcc-----cccchhcCCCCCCcEEeccCCCCCCc--
Q 038390          113 LIFMKSPKTLILSGCSKLK------KFPEIVGNMKFLRQLLLDGTDI-----KGLLLSIVLLSGIVQLNLKGCKNIEC--  179 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~------~~p~~~~~l~~L~~L~l~~~~i-----~~lp~~~~~l~~L~~L~l~~~~~~~~--  179 (228)
                      +..+++|++|++++| .+.      .+|..+..+++|++|++++|.+     ..+|..+..+++|+.|++++|.....  
T Consensus       183 l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  261 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  261 (386)
T ss_dssp             HHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             HHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence            667889999999999 555      2444788999999999999998     56788899999999999999864332  


Q ss_pred             --cCccc--CCCCCCCEEeccCCCCCcc-----cchhh-hcCccccceeccccCCCC
Q 038390          180 --LPNFI--SALKFPSTLNFSGLLKFRL-----FPEIM-GCIEHLLALRLLGTAIRG  226 (228)
Q Consensus       180 --lp~~~--~~l~~L~~L~l~~c~~l~~-----lp~~~-~~l~~L~~L~l~~n~l~~  226 (228)
                        +|..+  +.+++|++|++++| .++.     +|..+ .++++|+.|++++|.++.
T Consensus       262 ~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          262 AAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence              46666  45899999999995 5665     88877 678999999999999974

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.26  E-value=3.5e-11  Score=90.18  Aligned_cols=97  Identities=15%  Similarity=0.219  Sum_probs=79.9

Q ss_pred             ccccccccccccccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCC
Q 038390          101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIE  178 (228)
Q Consensus       101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~  178 (228)
                      .++.+|..    +.  ++|++|++++|. +..+ |..++.+++|++|+|++|.++.+|.. +..+++|+.|++++| .++
T Consensus        23 ~l~~iP~~----~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~   94 (174)
T 2r9u_A           23 RLASVPAG----IP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLK   94 (174)
T ss_dssp             CCSSCCSC----CC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred             CCCccCCC----cC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccc
Confidence            45566654    43  789999999994 5555 77899999999999999999999876 589999999999996 567


Q ss_pred             ccCcc-cCCCCCCCEEeccCCCCCcccch
Q 038390          179 CLPNF-ISALKFPSTLNFSGLLKFRLFPE  206 (228)
Q Consensus       179 ~lp~~-~~~l~~L~~L~l~~c~~l~~lp~  206 (228)
                      .+|.. +..+++|++|++++ |.+...|.
T Consensus        95 ~l~~~~~~~l~~L~~L~L~~-N~~~c~~~  122 (174)
T 2r9u_A           95 SIPRGAFDNLKSLTHIYLYN-NPWDCECR  122 (174)
T ss_dssp             CCCTTTTTTCTTCSEEECCS-SCBCTTBG
T ss_pred             eeCHHHhccccCCCEEEeCC-CCcccccc
Confidence            78765 88999999999999 56665554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.24  E-value=3.9e-14  Score=108.40  Aligned_cols=105  Identities=16%  Similarity=0.166  Sum_probs=88.8

Q ss_pred             ccEEEccCC-CCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEeccC
Q 038390          119 PKTLILSGC-SKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSG  197 (228)
Q Consensus       119 L~~L~ls~~-~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~  197 (228)
                      |+.+.++++ ..++.+|..++.+++|++|++++|.+..+| .+..+++|++|++++|. ++.+|..+..+++|++|++++
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcC
Confidence            344455443 246677779999999999999999999998 88999999999999974 678898888889999999999


Q ss_pred             CCCCcccchhhhcCccccceeccccCCCCC
Q 038390          198 LLKFRLFPEIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       198 c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                       +.++.+| .++.+++|+.|++++|.++.+
T Consensus       103 -N~l~~l~-~~~~l~~L~~L~l~~N~i~~~  130 (198)
T 1ds9_A          103 -NQIASLS-GIEKLVNLRVLYMSNNKITNW  130 (198)
T ss_dssp             -EECCCHH-HHHHHHHSSEEEESEEECCCH
T ss_pred             -CcCCcCC-ccccCCCCCEEECCCCcCCch
Confidence             5778887 688999999999999999864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.23  E-value=2.7e-11  Score=106.78  Aligned_cols=78  Identities=13%  Similarity=0.136  Sum_probs=42.1

Q ss_pred             CCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCC-------CEEeccCCCCCcccchhhhcCc
Q 038390          140 MKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFP-------STLNFSGLLKFRLFPEIMGCIE  212 (228)
Q Consensus       140 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L-------~~L~l~~c~~l~~lp~~~~~l~  212 (228)
                      +++|++|++++|.++.+|. +.  ++|+.|++++| .++.+|. +..  +|       +.|++++ |.++.+|..+..++
T Consensus       159 l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~  230 (571)
T 3cvr_A          159 PTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLD  230 (571)
T ss_dssp             CTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSC
T ss_pred             CCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCC
Confidence            3444445555554444444 33  45555555554 3445555 333  45       6666666 45566666666666


Q ss_pred             cccceeccccCCC
Q 038390          213 HLLALRLLGTAIR  225 (228)
Q Consensus       213 ~L~~L~l~~n~l~  225 (228)
                      +|+.|++++|.++
T Consensus       231 ~L~~L~L~~N~l~  243 (571)
T 3cvr_A          231 PTCTIILEDNPLS  243 (571)
T ss_dssp             TTEEEECCSSSCC
T ss_pred             CCCEEEeeCCcCC
Confidence            6777777766665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.21  E-value=7e-11  Score=105.17  Aligned_cols=102  Identities=23%  Similarity=0.260  Sum_probs=62.1

Q ss_pred             ccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEe
Q 038390          115 FMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLN  194 (228)
Q Consensus       115 ~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~  194 (228)
                      .+++|++|++++| .++.+|.   .+++|++|++++|.++.+|.   .+++|+.|++++| .++.+|..   +++|++|+
T Consensus        79 ~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~  147 (622)
T 3g06_A           79 LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELS  147 (622)
T ss_dssp             CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEE
T ss_pred             cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEE
Confidence            3456666666666 4555665   45666677777766666665   4566777777765 35556653   36777888


Q ss_pred             ccCCCCCcccchhhhcC-----------------ccccceeccccCCCCCC
Q 038390          195 FSGLLKFRLFPEIMGCI-----------------EHLLALRLLGTAIRGLP  228 (228)
Q Consensus       195 l~~c~~l~~lp~~~~~l-----------------~~L~~L~l~~n~l~~lP  228 (228)
                      +++ +.++.+|..+..+                 ++|+.|++++|.|+++|
T Consensus       148 Ls~-N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~  197 (622)
T 3g06_A          148 VSD-NQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLP  197 (622)
T ss_dssp             CCS-SCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC
T ss_pred             CcC-CcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCC
Confidence            877 4556555433222                 55566666666666554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.21  E-value=9.2e-11  Score=87.46  Aligned_cols=94  Identities=19%  Similarity=0.256  Sum_probs=77.5

Q ss_pred             cccccccccccccccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCC
Q 038390          100 HSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNI  177 (228)
Q Consensus       100 ~~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~  177 (228)
                      ..++.+|..    +  .++|++|+|++| .+..+ |..++.+++|++|++++|.++.+|.. +..+++|++|++++|. +
T Consensus        19 n~l~~ip~~----~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l   90 (170)
T 3g39_A           19 KSLASVPTG----I--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-L   90 (170)
T ss_dssp             SCCSSCCSC----C--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred             CCcCccCcc----C--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-c
Confidence            355666654    4  378999999999 55555 77899999999999999999999876 5899999999999974 6


Q ss_pred             CccCc-ccCCCCCCCEEeccCCCCCc
Q 038390          178 ECLPN-FISALKFPSTLNFSGLLKFR  202 (228)
Q Consensus       178 ~~lp~-~~~~l~~L~~L~l~~c~~l~  202 (228)
                      +.+|. .+..+++|++|++++ |.+.
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~-N~~~  115 (170)
T 3g39_A           91 KSIPRGAFDNLKSLTHIWLLN-NPWD  115 (170)
T ss_dssp             CCCCTTTTTTCTTCCEEECCS-SCBC
T ss_pred             CEeCHHHhcCCCCCCEEEeCC-CCCC
Confidence            77766 588999999999999 5444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.20  E-value=8.2e-12  Score=102.60  Aligned_cols=111  Identities=21%  Similarity=0.263  Sum_probs=94.5

Q ss_pred             ccccCCccEEEccCCCCCcc-cchhhcCCCCcceEEccCCccc-ccchhcCCCCCCcEEeccCCCCCC--ccCcccCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKK-FPEIVGNMKFLRQLLLDGTDIK-GLLLSIVLLSGIVQLNLKGCKNIE--CLPNFISALK  188 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~-~p~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~--~lp~~~~~l~  188 (228)
                      +..+++|++|++++|..... +|..+..+++|++|++++|.+. ..|..++.+++|++|++++|..++  .+|..+.+++
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~  168 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  168 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence            66789999999999953333 7888999999999999999887 567788899999999999986566  3677788899


Q ss_pred             CCCEEeccCCCCCcc--cchhhhcCc-cccceeccccC
Q 038390          189 FPSTLNFSGLLKFRL--FPEIMGCIE-HLLALRLLGTA  223 (228)
Q Consensus       189 ~L~~L~l~~c~~l~~--lp~~~~~l~-~L~~L~l~~n~  223 (228)
                      +|++|++++|..++.  +|..++.++ +|++|++++|.
T Consensus       169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence            999999999756664  788899999 99999999993

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.18  E-value=1.7e-10  Score=102.69  Aligned_cols=78  Identities=21%  Similarity=0.273  Sum_probs=58.9

Q ss_pred             CCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCcccchhhhcCccccceecc
Q 038390          141 KFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLL  220 (228)
Q Consensus       141 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~  220 (228)
                      ++|+.|++++|.++.+|   ..+++|+.|++++| .++.+|.   .+++|+.|++++ +.++.+|+.++.+++|+.|+++
T Consensus       221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~-N~L~~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCS-SCCCSCCGGGGGSCTTCEEECC
T ss_pred             CCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCC-CCCCcCCHHHhhccccCEEEec
Confidence            45666666666666666   44567777888775 4566776   567888899988 5677888888999999999999


Q ss_pred             ccCCCC
Q 038390          221 GTAIRG  226 (228)
Q Consensus       221 ~n~l~~  226 (228)
                      +|.+++
T Consensus       293 ~N~l~~  298 (622)
T 3g06_A          293 GNPLSE  298 (622)
T ss_dssp             SCCCCH
T ss_pred             CCCCCC
Confidence            998863

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.16  E-value=1.2e-10  Score=100.05  Aligned_cols=101  Identities=16%  Similarity=0.238  Sum_probs=80.0

Q ss_pred             CCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEecc
Q 038390          117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFS  196 (228)
Q Consensus       117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~  196 (228)
                      ++|++|++++| .+..+|..   .++|++|++++|.++.+| .++.+++|++|++++|. ++.+|..+   .+|++|+++
T Consensus       111 ~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~  181 (454)
T 1jl5_A          111 QSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAG  181 (454)
T ss_dssp             TTCCEEECCSS-CCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECC
T ss_pred             CCCcEEECCCC-ccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCCCc---ccccEEECc
Confidence            67888888887 56666542   268999999999999988 69999999999999874 66677643   478888888


Q ss_pred             CCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          197 GLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       197 ~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      + +.++.+| .++.+++|+.|++++|.++++|
T Consensus       182 ~-n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~  211 (454)
T 1jl5_A          182 N-NQLEELP-ELQNLPFLTAIYADNNSLKKLP  211 (454)
T ss_dssp             S-SCCSSCC-CCTTCTTCCEEECCSSCCSSCC
T ss_pred             C-CcCCcCc-cccCCCCCCEEECCCCcCCcCC
Confidence            8 4677777 5788888888888888887665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.15  E-value=8.2e-11  Score=97.60  Aligned_cols=120  Identities=13%  Similarity=0.125  Sum_probs=88.4

Q ss_pred             cccccccccccccccccCCccEEEccCCCCCcccch-hhcCCCCcceEEccCCcccc-cch-hcCCCCCCcEEeccCCCC
Q 038390          100 HSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDIKG-LLL-SIVLLSGIVQLNLKGCKN  176 (228)
Q Consensus       100 ~~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i~~-lp~-~~~~l~~L~~L~l~~~~~  176 (228)
                      .+++++|..    +  .+++++|+|++| .++.+|. .|.++++|++|+|++|.+.+ +|. .+.+++++..+...+++.
T Consensus        19 ~~Lt~iP~~----l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~   91 (350)
T 4ay9_X           19 SKVTEIPSD----L--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   91 (350)
T ss_dssp             TTCCSCCTT----C--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred             CCCCccCcC----c--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence            357777764    4  367999999998 6888875 58899999999999998754 554 467888887755554456


Q ss_pred             CCcc-CcccCCCCCCCEEeccCCCCCcccch-hhhcCccccceeccc-cCCCCC
Q 038390          177 IECL-PNFISALKFPSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLG-TAIRGL  227 (228)
Q Consensus       177 ~~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-n~l~~l  227 (228)
                      +..+ |..+..+++|++|++++ +.++.+|+ .+.....+..|++.+ +.+..+
T Consensus        92 l~~l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l  144 (350)
T 4ay9_X           92 LLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTI  144 (350)
T ss_dssp             CCEECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred             ccccCchhhhhccccccccccc-cccccCCchhhcccchhhhhhhccccccccc
Confidence            7777 45678999999999998 56777764 445566677888865 455544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.10  E-value=1.3e-10  Score=96.36  Aligned_cols=114  Identities=20%  Similarity=0.146  Sum_probs=65.3

Q ss_pred             ccccCCccEEEccCCCCCcccch-hhcCCCCcceEEccC-Ccccccch-hcCCC-CCCcEEeccCCCCCCccCcccCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDG-TDIKGLLL-SIVLL-SGIVQLNLKGCKNIECLPNFISALK  188 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~-~~i~~lp~-~~~~l-~~L~~L~l~~~~~~~~lp~~~~~l~  188 (228)
                      +..+++|++|++++| .+..+|+ .+.....+..+++.+ +.+..+|. .+..+ ..++.|++++| .++.+|..+....
T Consensus       100 f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~  177 (350)
T 4ay9_X          100 FQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGT  177 (350)
T ss_dssp             BCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTE
T ss_pred             hhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhcccc
Confidence            455666666666665 3433332 233333444455433 34444443 23333 34666666664 4566666555666


Q ss_pred             CCCEEeccCCCCCcccch-hhhcCccccceeccccCCCCCC
Q 038390          189 FPSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       189 ~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +|+.+++.+++.++.+|+ .++.+++|+.|++++|+|+.+|
T Consensus       178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp  218 (350)
T 4ay9_X          178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP  218 (350)
T ss_dssp             EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred             chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence            677777766667777764 4567777777777777777665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.07  E-value=3.7e-11  Score=100.83  Aligned_cols=109  Identities=14%  Similarity=0.101  Sum_probs=83.4

Q ss_pred             CCccEEEccCCCCC-cccc---hhhcCCCCcceEEccCCccc------ccchhcCCCCCCcEEeccCCCCC----CccCc
Q 038390          117 KSPKTLILSGCSKL-KKFP---EIVGNMKFLRQLLLDGTDIK------GLLLSIVLLSGIVQLNLKGCKNI----ECLPN  182 (228)
Q Consensus       117 ~~L~~L~ls~~~~l-~~~p---~~~~~l~~L~~L~l~~~~i~------~lp~~~~~l~~L~~L~l~~~~~~----~~lp~  182 (228)
                      ++|++|++++|..- ..+|   ..+..+++|++|++++|.+.      -+|..+..+++|+.|++++|...    ..+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            78999999988433 3445   46778889999999999887      23447788899999999987632    56777


Q ss_pred             ccCCCCCCCEEeccCCCCCcc-----cchhhh--cCccccceeccccCCCC
Q 038390          183 FISALKFPSTLNFSGLLKFRL-----FPEIMG--CIEHLLALRLLGTAIRG  226 (228)
Q Consensus       183 ~~~~l~~L~~L~l~~c~~l~~-----lp~~~~--~l~~L~~L~l~~n~l~~  226 (228)
                      .+..+++|++|++++|. ++.     +|..+.  .+++|+.|+|++|.|+.
T Consensus       239 ~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            88888999999999854 543     466663  48899999999998864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.04  E-value=5.5e-10  Score=92.25  Aligned_cols=83  Identities=14%  Similarity=0.144  Sum_probs=72.2

Q ss_pred             ceEEccCC-cccccchhcCCCCCCcEEeccCCCCCCccC-cccCCCCCCCEEeccCCCCCcccc-hhhhcCccccceecc
Q 038390          144 RQLLLDGT-DIKGLLLSIVLLSGIVQLNLKGCKNIECLP-NFISALKFPSTLNFSGLLKFRLFP-EIMGCIEHLLALRLL  220 (228)
Q Consensus       144 ~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~  220 (228)
                      ..++++++ .+..+|. ++.+++|+.|+|++++.++.+| ..|+++++|+.|+|++ |.++.+| ..++.|++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCC
Confidence            45688888 8999999 9999999999999745677776 5799999999999999 5677666 578999999999999


Q ss_pred             ccCCCCCC
Q 038390          221 GTAIRGLP  228 (228)
Q Consensus       221 ~n~l~~lP  228 (228)
                      +|.|+.+|
T Consensus        89 ~N~l~~~~   96 (347)
T 2ifg_A           89 FNALESLS   96 (347)
T ss_dssp             SSCCSCCC
T ss_pred             CCccceeC
Confidence            99999876

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.03  E-value=1.7e-10  Score=96.06  Aligned_cols=33  Identities=27%  Similarity=0.471  Sum_probs=14.5

Q ss_pred             CcceEEccCCccc-----ccchhcCCCC-CCcEEeccCC
Q 038390          142 FLRQLLLDGTDIK-----GLLLSIVLLS-GIVQLNLKGC  174 (228)
Q Consensus       142 ~L~~L~l~~~~i~-----~lp~~~~~l~-~L~~L~l~~~  174 (228)
                      +|++|++++|.++     .++..+..+. +|+.|++++|
T Consensus       139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n  177 (362)
T 3goz_A          139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN  177 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence            4555555555444     2233333333 4555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.95  E-value=3.7e-10  Score=93.99  Aligned_cols=107  Identities=20%  Similarity=0.185  Sum_probs=72.4

Q ss_pred             CCccEEEccCCCCCcc-cchh----hcCC-CCcceEEccCCcccccch-----hcCC-CCCCcEEeccCCCCCC-----c
Q 038390          117 KSPKTLILSGCSKLKK-FPEI----VGNM-KFLRQLLLDGTDIKGLLL-----SIVL-LSGIVQLNLKGCKNIE-----C  179 (228)
Q Consensus       117 ~~L~~L~ls~~~~l~~-~p~~----~~~l-~~L~~L~l~~~~i~~lp~-----~~~~-l~~L~~L~l~~~~~~~-----~  179 (228)
                      ++|++|++++|. ++. .+..    +..+ ++|++|++++|.++..+.     .+.. .++|++|++++|. ++     .
T Consensus        80 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~  157 (362)
T 3goz_A           80 ANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDE  157 (362)
T ss_dssp             TTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHH
T ss_pred             CCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHH
Confidence            788899998884 543 3333    3444 788999999988876543     2344 3689999998875 33     3


Q ss_pred             cCcccCCCC-CCCEEeccCCCCCccc-ch----hhhcC-ccccceeccccCCCC
Q 038390          180 LPNFISALK-FPSTLNFSGLLKFRLF-PE----IMGCI-EHLLALRLLGTAIRG  226 (228)
Q Consensus       180 lp~~~~~l~-~L~~L~l~~c~~l~~l-p~----~~~~l-~~L~~L~l~~n~l~~  226 (228)
                      ++..+..++ +|++|++++| .++.. +.    .+..+ ++|++|++++|.|+.
T Consensus       158 l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          158 LIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            444455555 8999999985 45433 33    34445 589999999998864

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=98.92  E-value=3.6e-11  Score=87.40  Aligned_cols=43  Identities=14%  Similarity=0.323  Sum_probs=39.8

Q ss_pred             CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHHhc
Q 038390            1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWK   43 (228)
Q Consensus         1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c~   43 (228)
                      |+.|.+++.+||++||.+|+|+|+||+.|.||..|+..+++|.
T Consensus        51 G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~~   93 (146)
T 3ub2_A           51 GGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEA   93 (146)
T ss_dssp             --CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHTS
T ss_pred             cccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHHH
Confidence            7889999999999999999999999999999999999999985

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.92  E-value=1.9e-10  Score=98.31  Aligned_cols=110  Identities=14%  Similarity=0.082  Sum_probs=76.6

Q ss_pred             ccccCCccEEEccCCCCCcc-cchhhc-----CCCCcceEEccCCcccc-----cchhcCCCCCCcEEeccCCCCCCcc-
Q 038390          113 LIFMKSPKTLILSGCSKLKK-FPEIVG-----NMKFLRQLLLDGTDIKG-----LLLSIVLLSGIVQLNLKGCKNIECL-  180 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~-~p~~~~-----~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~l-  180 (228)
                      +..+++|++|++++| .++. .+..+.     ..++|++|++++|.++.     +|..+..+++|+.|++++|. ++.. 
T Consensus       280 l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~  357 (461)
T 1z7x_W          280 LRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAG  357 (461)
T ss_dssp             HHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHH
T ss_pred             HhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-ccccc
Confidence            455778888888887 3432 222222     22578888888887763     46667778889999998874 3332 


Q ss_pred             CcccC-----CCCCCCEEeccCCCCCc-----ccchhhhcCccccceeccccCCC
Q 038390          181 PNFIS-----ALKFPSTLNFSGLLKFR-----LFPEIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       181 p~~~~-----~l~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~n~l~  225 (228)
                      +..+.     ..++|++|++++| .++     .+|..+..+++|++|++++|.|+
T Consensus       358 ~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          358 VRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             HHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            22222     2678999999985 455     67888888999999999999876

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.89  E-value=4.1e-10  Score=96.23  Aligned_cols=109  Identities=15%  Similarity=0.168  Sum_probs=60.6

Q ss_pred             ccCCccEEEccCCCCCcc-----cchhhcCCCCcceEEccCCccccc-----chhcC-CCCCCcEEeccCCCCCCc----
Q 038390          115 FMKSPKTLILSGCSKLKK-----FPEIVGNMKFLRQLLLDGTDIKGL-----LLSIV-LLSGIVQLNLKGCKNIEC----  179 (228)
Q Consensus       115 ~l~~L~~L~ls~~~~l~~-----~p~~~~~l~~L~~L~l~~~~i~~l-----p~~~~-~l~~L~~L~l~~~~~~~~----  179 (228)
                      .+++|++|++++| .++.     ++..+..+++|++|++++|.++..     ...+. ..++|+.|++++|.....    
T Consensus       254 ~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  332 (461)
T 1z7x_W          254 PSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH  332 (461)
T ss_dssp             TTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             CCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHH
Confidence            3556666666666 3433     455555666666666666665422     22221 224666666666543222    


Q ss_pred             cCcccCCCCCCCEEeccCCCCCccc-chhhhc-----CccccceeccccCCC
Q 038390          180 LPNFISALKFPSTLNFSGLLKFRLF-PEIMGC-----IEHLLALRLLGTAIR  225 (228)
Q Consensus       180 lp~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~-----l~~L~~L~l~~n~l~  225 (228)
                      +|..+..+++|++|++++| .++.. +..+..     .++|+.|++++|.++
T Consensus       333 l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          333 FSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             HHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            3445556677777777774 34432 232322     557777777777765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.81  E-value=1.5e-08  Score=83.10  Aligned_cols=85  Identities=14%  Similarity=0.103  Sum_probs=71.5

Q ss_pred             CCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCCCC-EEeccCCCCCcccc-hhhhcCcccc
Q 038390          140 MKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKFPS-TLNFSGLLKFRLFP-EIMGCIEHLL  215 (228)
Q Consensus       140 l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~-~L~l~~c~~l~~lp-~~~~~l~~L~  215 (228)
                      +++|+.+++++|.+..+|. .+.++++|+.+++.++  +..++. .|.++++|+ .+++.+  .++.++ ..+..+++|+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence            6789999999999999976 4788999999999885  677765 588999999 999986  577776 6789999999


Q ss_pred             ceeccccCCCCCC
Q 038390          216 ALRLLGTAIRGLP  228 (228)
Q Consensus       216 ~L~l~~n~l~~lP  228 (228)
                      .+++++|+++.|+
T Consensus       301 ~l~l~~n~i~~I~  313 (329)
T 3sb4_A          301 YVLATGDKITTLG  313 (329)
T ss_dssp             EEEECSSCCCEEC
T ss_pred             EEEeCCCccCccc
Confidence            9999999887654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.80  E-value=7.7e-09  Score=91.07  Aligned_cols=111  Identities=13%  Similarity=-0.011  Sum_probs=71.1

Q ss_pred             ccccCCccEEEccCCCCC----cccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCC---CccCcccC
Q 038390          113 LIFMKSPKTLILSGCSKL----KKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNI---ECLPNFIS  185 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l----~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~---~~lp~~~~  185 (228)
                      ...+++|++|++++|..-    ..++..+..+++|+.|++++|.+..+|..+..+++|+.|+++++...   ...+..+.
T Consensus       188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred             HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence            346677888888877432    34556667778888888888877777777777777777777643322   12233455


Q ss_pred             CCCCCCEEeccCCCCCcccchhhhcCccccceeccccCC
Q 038390          186 ALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAI  224 (228)
Q Consensus       186 ~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l  224 (228)
                      .+++|+.|++++ .....+|..+..+++|++|++++|.+
T Consensus       268 ~~~~L~~L~l~~-~~~~~l~~~~~~~~~L~~L~Ls~~~l  305 (592)
T 3ogk_B          268 FPRKLCRLGLSY-MGPNEMPILFPFAAQIRKLDLLYALL  305 (592)
T ss_dssp             CCTTCCEEEETT-CCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred             ccccccccCccc-cchhHHHHHHhhcCCCcEEecCCCcC
Confidence            556666666655 33445566666666666666666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.71  E-value=6.9e-09  Score=86.84  Aligned_cols=109  Identities=13%  Similarity=0.045  Sum_probs=81.0

Q ss_pred             cccCCccEEEccCCCCCccc-----chhh-cCCCCcceEEccCCcccc-----cchhcCCCCCCcEEeccCCCCCCc---
Q 038390          114 IFMKSPKTLILSGCSKLKKF-----PEIV-GNMKFLRQLLLDGTDIKG-----LLLSIVLLSGIVQLNLKGCKNIEC---  179 (228)
Q Consensus       114 ~~l~~L~~L~ls~~~~l~~~-----p~~~-~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~---  179 (228)
                      ..+++|+.|+|++| .++..     ...+ ...++|++|+|++|.++.     ++..+...++|++|+|++|. ++.   
T Consensus       123 ~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~  200 (372)
T 3un9_A          123 PVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGL  200 (372)
T ss_dssp             HHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHH
T ss_pred             HHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHH
Confidence            35678999999998 45332     2222 246789999999998864     55666788899999999975 432   


Q ss_pred             --cCcccCCCCCCCEEeccCCCCCc-----ccchhhhcCccccceeccccCCC
Q 038390          180 --LPNFISALKFPSTLNFSGLLKFR-----LFPEIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       180 --lp~~~~~l~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~n~l~  225 (228)
                        ++..+...++|++|+|++| .++     .++..+...++|++|+|++|.|+
T Consensus       201 ~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          201 ELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence              3455667789999999995 455     34556667789999999999886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.67  E-value=1.8e-08  Score=76.05  Aligned_cols=111  Identities=12%  Similarity=0.059  Sum_probs=83.2

Q ss_pred             ccccCCccEEEccCCCCCc-----ccchhhcCCCCcceEEccCCcccc-----cchhcCCCCCCcEEeccCCCCCCc---
Q 038390          113 LIFMKSPKTLILSGCSKLK-----KFPEIVGNMKFLRQLLLDGTDIKG-----LLLSIVLLSGIVQLNLKGCKNIEC---  179 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~-----~~p~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~---  179 (228)
                      +...++|++|+|++|..++     .+.+.+...++|++|+|++|.+..     +...+...++|++|+|++|. ++.   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~  110 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGI  110 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHH
Confidence            5667889999999883343     245667778899999999998863     45556667889999999875 443   


Q ss_pred             --cCcccCCCCCCCEEec--cCCCCCcc-----cchhhhcCccccceeccccCCC
Q 038390          180 --LPNFISALKFPSTLNF--SGLLKFRL-----FPEIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       180 --lp~~~~~l~~L~~L~l--~~c~~l~~-----lp~~~~~l~~L~~L~l~~n~l~  225 (228)
                        +...+...++|++|++  ++ +.++.     +.+.+...++|++|++++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              4556677788999999  66 55653     5566677789999999999763

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=98.66  E-value=2.2e-09  Score=80.48  Aligned_cols=42  Identities=31%  Similarity=0.357  Sum_probs=39.8

Q ss_pred             CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHHh
Q 038390            1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEW   42 (228)
Q Consensus         1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c   42 (228)
                      |+.|.+++.+||++||.+|+|+|++|+.|.||..|+..++++
T Consensus        77 G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~  118 (178)
T 2j67_A           77 GKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHN  118 (178)
T ss_dssp             TSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC
T ss_pred             CccHHHHHHHHHHhCCEEEEEecccccccchHHHHHHHHHHH
Confidence            788999999999999999999999999999999999998864

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.65  E-value=5.3e-09  Score=92.09  Aligned_cols=108  Identities=19%  Similarity=0.264  Sum_probs=79.6

Q ss_pred             ccCCccEEEccCCCCCcc--cchhhcCCCCcceEEccCCcccc-----cchhcCCCCCCcEEeccCCC-CC--CccCccc
Q 038390          115 FMKSPKTLILSGCSKLKK--FPEIVGNMKFLRQLLLDGTDIKG-----LLLSIVLLSGIVQLNLKGCK-NI--ECLPNFI  184 (228)
Q Consensus       115 ~l~~L~~L~ls~~~~l~~--~p~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~-~~--~~lp~~~  184 (228)
                      .+++|++|++++|..++.  ++.....+++|++|++++|.++.     ++.....+++|+.|++++|. .+  ..++..+
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~  207 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV  207 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred             hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence            678999999998865554  56666688999999999987654     33334567899999999875 11  1122223


Q ss_pred             CCCCCCCEEeccCCCCCcccchhhhcCccccceecccc
Q 038390          185 SALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGT  222 (228)
Q Consensus       185 ~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n  222 (228)
                      .++++|++|++++|..++.+|..++.+++|+.|+++.+
T Consensus       208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred             HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence            45789999999998777778888888888888886655

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=98.65  E-value=6.3e-09  Score=76.58  Aligned_cols=43  Identities=16%  Similarity=0.215  Sum_probs=40.4

Q ss_pred             CCCCChhHHHHHhhcceEEEEecCCCc-chhccHHHHHHHHHhc
Q 038390            1 GISISPAPSKVIEESRISVIVFLRNCA-SSTWCLDELVKIVEWK   43 (228)
Q Consensus         1 g~~~~~~~~~~i~~s~~~~~~~s~~y~-~s~wcl~el~~i~~c~   43 (228)
                      |+.|.+++.+||++||..|+|+|++|+ .|.||..|+..+++|.
T Consensus        54 G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a~~~~   97 (159)
T 1t3g_A           54 TGTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNM   97 (159)
T ss_dssp             CTTHHHHHHHHHHTBSEEEEEECHHHHHTTTTHHHHHSHHHHHH
T ss_pred             ccchHHHHHHHHHHcCEEEEEEccchhhcChHHHHHHHHHHHHH
Confidence            788999999999999999999999996 9999999999999873

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=98.61  E-value=5.8e-09  Score=76.88  Aligned_cols=42  Identities=21%  Similarity=0.202  Sum_probs=39.5

Q ss_pred             CCCCChhHHHHHh-hcceEEEEecCCCcchhccHHHHHHHHHh
Q 038390            1 GISISPAPSKVIE-ESRISVIVFLRNCASSTWCLDELVKIVEW   42 (228)
Q Consensus         1 g~~~~~~~~~~i~-~s~~~~~~~s~~y~~s~wcl~el~~i~~c   42 (228)
                      |+.|.+++.+||+ .||.+|+|+|++|+.|.||..|+..+++|
T Consensus        57 G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a~~~   99 (160)
T 2js7_A           57 GTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSL   99 (160)
T ss_dssp             SCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHHHHH
Confidence            7889999999999 69999999999999999999999999974

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=98.56  E-value=7.7e-09  Score=75.33  Aligned_cols=41  Identities=29%  Similarity=0.203  Sum_probs=38.8

Q ss_pred             CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHH
Q 038390            1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVE   41 (228)
Q Consensus         1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~   41 (228)
                      |+.|.+++.+||++||++|+|+|++|+.|.||..|+..+++
T Consensus        47 G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~   87 (149)
T 1fyx_A           47 GKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHF   87 (149)
T ss_dssp             SSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCC
T ss_pred             chhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHH
Confidence            78899999999999999999999999999999999998874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.52  E-value=1.3e-07  Score=83.18  Aligned_cols=84  Identities=8%  Similarity=0.026  Sum_probs=48.2

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcc----cccchhcCCCCCCcEEeccCCCCCCccCcccCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDI----KGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALK  188 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i----~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~  188 (228)
                      +.++++|++|++++| .+..+|..++.+++|++|+++....    ...+..++.+++|+.|++.++ ....+|..+..++
T Consensus       216 ~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~  293 (592)
T 3ogk_B          216 ARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAA  293 (592)
T ss_dssp             HHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGG
T ss_pred             HhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcC
Confidence            557889999999998 5666788888888888888864311    122233344444444444442 2233444444444


Q ss_pred             CCCEEeccCC
Q 038390          189 FPSTLNFSGL  198 (228)
Q Consensus       189 ~L~~L~l~~c  198 (228)
                      +|++|++++|
T Consensus       294 ~L~~L~Ls~~  303 (592)
T 3ogk_B          294 QIRKLDLLYA  303 (592)
T ss_dssp             GCCEEEETTC
T ss_pred             CCcEEecCCC
Confidence            4444444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.51  E-value=4.4e-08  Score=81.91  Aligned_cols=107  Identities=12%  Similarity=0.055  Sum_probs=80.5

Q ss_pred             CCccEEEccCCCCCcc--cchhhcCCCCcceEEccCCccccc-----chhc-CCCCCCcEEeccCCCCCCc-----cCcc
Q 038390          117 KSPKTLILSGCSKLKK--FPEIVGNMKFLRQLLLDGTDIKGL-----LLSI-VLLSGIVQLNLKGCKNIEC-----LPNF  183 (228)
Q Consensus       117 ~~L~~L~ls~~~~l~~--~p~~~~~l~~L~~L~l~~~~i~~l-----p~~~-~~l~~L~~L~l~~~~~~~~-----lp~~  183 (228)
                      ++|++|+|++|. ++.  +......+++|++|+|++|.++..     ...+ ...++|+.|+|++|. ++.     ++..
T Consensus       101 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~  178 (372)
T 3un9_A          101 HALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG  178 (372)
T ss_dssp             SCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH
T ss_pred             CCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH
Confidence            689999999994 432  233344567899999999988643     2223 356889999999985 433     4555


Q ss_pred             cCCCCCCCEEeccCCCCCcc-----cchhhhcCccccceeccccCCCC
Q 038390          184 ISALKFPSTLNFSGLLKFRL-----FPEIMGCIEHLLALRLLGTAIRG  226 (228)
Q Consensus       184 ~~~l~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~l~~n~l~~  226 (228)
                      +..+++|++|+|++| .++.     +++.+...++|+.|+|++|.|+.
T Consensus       179 L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          179 LAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             HhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            678899999999995 4553     46677788899999999999873

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.43  E-value=1.3e-07  Score=83.08  Aligned_cols=108  Identities=16%  Similarity=0.185  Sum_probs=79.8

Q ss_pred             cccCCccEEEccCCCCCcccchhhc-CCCCcceEEccCC-cccc--cchhcCCCCCCcEEeccCCCCCCc-----cCccc
Q 038390          114 IFMKSPKTLILSGCSKLKKFPEIVG-NMKFLRQLLLDGT-DIKG--LLLSIVLLSGIVQLNLKGCKNIEC-----LPNFI  184 (228)
Q Consensus       114 ~~l~~L~~L~ls~~~~l~~~p~~~~-~l~~L~~L~l~~~-~i~~--lp~~~~~l~~L~~L~l~~~~~~~~-----lp~~~  184 (228)
                      ..+++|++|++++|......+..+. .+++|++|++++| .++.  ++..+.++++|++|++++|. ++.     ++...
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~  180 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFP  180 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSC
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHh
Confidence            4678999999999964444455554 6899999999998 6654  56556689999999999986 222     33334


Q ss_pred             CCCCCCCEEeccCCC-CCc--ccchhhhcCccccceecccc
Q 038390          185 SALKFPSTLNFSGLL-KFR--LFPEIMGCIEHLLALRLLGT  222 (228)
Q Consensus       185 ~~l~~L~~L~l~~c~-~l~--~lp~~~~~l~~L~~L~l~~n  222 (228)
                      ..+++|+.|++++|. .+.  .++..+..+++|+.|++++|
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            478899999999975 222  34444566899999999988

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.40  E-value=2.1e-07  Score=69.38  Aligned_cols=87  Identities=10%  Similarity=0.097  Sum_probs=63.2

Q ss_pred             CCccEEEccCCCCCcc-cchhhcCCCCcceEEccCC-ccccc-chhcCCC----CCCcEEeccCCCCCCcc-CcccCCCC
Q 038390          117 KSPKTLILSGCSKLKK-FPEIVGNMKFLRQLLLDGT-DIKGL-LLSIVLL----SGIVQLNLKGCKNIECL-PNFISALK  188 (228)
Q Consensus       117 ~~L~~L~ls~~~~l~~-~p~~~~~l~~L~~L~l~~~-~i~~l-p~~~~~l----~~L~~L~l~~~~~~~~l-p~~~~~l~  188 (228)
                      ..|+.||+++|. +.. --..+..+++|++|+|++| .++.- -..+..+    ++|+.|++++|..+++- -..+.+++
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            368999999996 433 2344678999999999998 46532 1234443    47999999999877652 12466789


Q ss_pred             CCCEEeccCCCCCccc
Q 038390          189 FPSTLNFSGLLKFRLF  204 (228)
Q Consensus       189 ~L~~L~l~~c~~l~~l  204 (228)
                      +|++|++++|..++..
T Consensus       140 ~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             TCCEEEEESCTTCCCH
T ss_pred             CCCEEECCCCCCCCch
Confidence            9999999999888754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.38  E-value=3.2e-07  Score=73.11  Aligned_cols=79  Identities=22%  Similarity=0.169  Sum_probs=47.7

Q ss_pred             cCCCCcceEEccCCcccccc---hhcCCCCCCcEEeccCCCCCCccCcccCCCC--CCCEEeccCCCCCcccc-------
Q 038390          138 GNMKFLRQLLLDGTDIKGLL---LSIVLLSGIVQLNLKGCKNIECLPNFISALK--FPSTLNFSGLLKFRLFP-------  205 (228)
Q Consensus       138 ~~l~~L~~L~l~~~~i~~lp---~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~--~L~~L~l~~c~~l~~lp-------  205 (228)
                      ..+++|+.|+|++|.+..++   ..+..+++|+.|+|++|. +..+ ..+..++  +|++|+|++|.....+|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            45667777777777666543   445567777777777754 4443 2233333  77777777744333444       


Q ss_pred             hhhhcCcccccee
Q 038390          206 EIMGCIEHLLALR  218 (228)
Q Consensus       206 ~~~~~l~~L~~L~  218 (228)
                      ..+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2356677777765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.34  E-value=3.8e-07  Score=67.96  Aligned_cols=85  Identities=14%  Similarity=0.030  Sum_probs=62.6

Q ss_pred             CCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCcc-CcccCCC----CCCCEEeccCCCCCcccc-hhhhcCcc
Q 038390          141 KFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECL-PNFISAL----KFPSTLNFSGLLKFRLFP-EIMGCIEH  213 (228)
Q Consensus       141 ~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l----~~L~~L~l~~c~~l~~lp-~~~~~l~~  213 (228)
                      -.|++||+++|.++.. -..+..+++|+.|+|++|..+++- -..+..+    ++|++|+|++|..++.-- ..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            3689999999987643 234678899999999999876642 1234443    479999999998887422 45677899


Q ss_pred             ccceeccccC-CC
Q 038390          214 LLALRLLGTA-IR  225 (228)
Q Consensus       214 L~~L~l~~n~-l~  225 (228)
                      |+.|++++|. ++
T Consensus       141 L~~L~L~~c~~It  153 (176)
T 3e4g_A          141 LKYLFLSDLPGVK  153 (176)
T ss_dssp             CCEEEEESCTTCC
T ss_pred             CCEEECCCCCCCC
Confidence            9999999985 44

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.33  E-value=1.5e-06  Score=71.21  Aligned_cols=99  Identities=13%  Similarity=0.124  Sum_probs=84.5

Q ss_pred             cCCccEEEccCCCCCcccch-hhcCCCCcceEEccCCcccccch-hcCCCCCCc-EEeccCCCCCCccC-cccCCCCCCC
Q 038390          116 MKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIV-QLNLKGCKNIECLP-NFISALKFPS  191 (228)
Q Consensus       116 l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~-~L~l~~~~~~~~lp-~~~~~l~~L~  191 (228)
                      +++|+.+++++| .+..+|+ .|.++.+|+.+++..| ++.++. .+.++.+|+ .+++.+  .++.++ ..|.+|++|+
T Consensus       225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence            789999999988 5777765 6889999999999998 888865 578999999 999987  467775 5789999999


Q ss_pred             EEeccCCCCCcccch-hhhcCccccceec
Q 038390          192 TLNFSGLLKFRLFPE-IMGCIEHLLALRL  219 (228)
Q Consensus       192 ~L~l~~c~~l~~lp~-~~~~l~~L~~L~l  219 (228)
                      .+++++ +.++.+++ .+.++++|+.++.
T Consensus       301 ~l~l~~-n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          301 YVLATG-DKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEEeCC-CccCccchhhhcCCcchhhhcc
Confidence            999988 77888885 7899999998864

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.26  E-value=3.2e-07  Score=73.08  Aligned_cols=79  Identities=19%  Similarity=0.181  Sum_probs=59.1

Q ss_pred             cccCCccEEEccCCCCCc---ccchhhcCCCCcceEEccCCcccccchhcCCCC--CCcEEeccCCCCCCccCc------
Q 038390          114 IFMKSPKTLILSGCSKLK---KFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLS--GIVQLNLKGCKNIECLPN------  182 (228)
Q Consensus       114 ~~l~~L~~L~ls~~~~l~---~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~--~L~~L~l~~~~~~~~lp~------  182 (228)
                      .++++|++|+|++| .+.   .+|..++.+++|+.|+|++|.++.+. .+..+.  +|+.|+|.+|.....+|.      
T Consensus       167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            46889999999998 444   44567778999999999999888763 344444  899999999875555552      


Q ss_pred             -ccCCCCCCCEEe
Q 038390          183 -FISALKFPSTLN  194 (228)
Q Consensus       183 -~~~~l~~L~~L~  194 (228)
                       .+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             256788888875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.22  E-value=8.3e-07  Score=73.90  Aligned_cols=63  Identities=11%  Similarity=0.102  Sum_probs=33.6

Q ss_pred             CCCCCcEEeccCCCCCCccCcc---cCCCCCCCEEeccCCCCCcc-----cchhhhcCccccceeccccCCC
Q 038390          162 LLSGIVQLNLKGCKNIECLPNF---ISALKFPSTLNFSGLLKFRL-----FPEIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       162 ~l~~L~~L~l~~~~~~~~lp~~---~~~l~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~l~~n~l~  225 (228)
                      .+++|+.|++.+|......+..   ...+++|++|+|+. +.++.     ++..+..+++|+.|++++|.|+
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            3556666666655432111111   12456677777765 34443     3444455667777777777654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.14  E-value=3.6e-06  Score=70.01  Aligned_cols=110  Identities=13%  Similarity=0.108  Sum_probs=70.4

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccccc-chhc--CCCCCCcEEeccCCC-------CCCccCc
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSI--VLLSGIVQLNLKGCK-------NIECLPN  182 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~--~~l~~L~~L~l~~~~-------~~~~lp~  182 (228)
                      +..+++|+.|++++|..+ .++. + .+++|++|++..+.+..- ...+  ..+++|+.|+|+.+.       .+..+..
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            456788888888887433 3343 3 377888888887766421 1222  368899999885321       1222222


Q ss_pred             cc--CCCCCCCEEeccCCCCCcccchhh---hcCccccceeccccCCC
Q 038390          183 FI--SALKFPSTLNFSGLLKFRLFPEIM---GCIEHLLALRLLGTAIR  225 (228)
Q Consensus       183 ~~--~~l~~L~~L~l~~c~~l~~lp~~~---~~l~~L~~L~l~~n~l~  225 (228)
                      .+  ..+++|++|++++|......+..+   ..+++|++|+|+.|.|.
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT  292 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence            22  357899999999865433333333   35789999999999875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.98  E-value=4.8e-06  Score=62.53  Aligned_cols=91  Identities=14%  Similarity=0.160  Sum_probs=71.4

Q ss_pred             cchhhcCCCCcceEEccCC-ccc-----ccchhcCCCCCCcEEeccCCCCCCc-----cCcccCCCCCCCEEeccCCCCC
Q 038390          133 FPEIVGNMKFLRQLLLDGT-DIK-----GLLLSIVLLSGIVQLNLKGCKNIEC-----LPNFISALKFPSTLNFSGLLKF  201 (228)
Q Consensus       133 ~p~~~~~l~~L~~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~c~~l  201 (228)
                      +...+...+.|++|+|++| .+.     .+...+...++|++|+|++|. ++.     +...+...++|++|+|++| .+
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i  105 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN-FI  105 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS-CC
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC-cC
Confidence            4556777899999999999 886     356677788999999999975 432     3444556688999999994 55


Q ss_pred             cc-----cchhhhcCccccceec--cccCCC
Q 038390          202 RL-----FPEIMGCIEHLLALRL--LGTAIR  225 (228)
Q Consensus       202 ~~-----lp~~~~~l~~L~~L~l--~~n~l~  225 (228)
                      +.     +.+.+...++|++|+|  ++|.|.
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence            53     5677788889999999  889886

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.87  E-value=8.9e-05  Score=62.43  Aligned_cols=104  Identities=9%  Similarity=0.106  Sum_probs=68.2

Q ss_pred             CCccEEEccCCCCCccc-chhhcCCCCcceEEccCCccc-----ccc-hhcCCCCCCcEEeccCCCCCCccCc-ccCCCC
Q 038390          117 KSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIK-----GLL-LSIVLLSGIVQLNLKGCKNIECLPN-FISALK  188 (228)
Q Consensus       117 ~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~-----~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~  188 (228)
                      .+|+.+.+..  .+..+ +..|.++++|+.+++.++.+.     .++ ..+.++++|+.+++.+  .+..++. .|.+|+
T Consensus       248 ~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~  323 (401)
T 4fdw_A          248 SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNR  323 (401)
T ss_dssp             CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCC
T ss_pred             CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCC
Confidence            4455555532  24444 345677778888887776554     443 3567777888888874  3566644 567788


Q ss_pred             CCCEEeccCCCCCcccc-hhhhcCccccceeccccCCCCC
Q 038390          189 FPSTLNFSGLLKFRLFP-EIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       189 ~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      +|+.+.+..  .++.++ ..+.++ +|+.+++.+|.+..+
T Consensus       324 ~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l  360 (401)
T 4fdw_A          324 KVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQV  360 (401)
T ss_dssp             SCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred             CccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCCccc
Confidence            888888854  366665 457777 888888888876544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.60  E-value=0.00026  Score=59.60  Aligned_cols=105  Identities=13%  Similarity=0.116  Sum_probs=52.3

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCC-----------------
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGC-----------------  174 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~-----------------  174 (228)
                      +.++++|+.+++++| .+..+|.......+|+.+.+..+ +..++. .+.++++|+.+++..+                 
T Consensus       176 F~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i  253 (401)
T 4fdw_A          176 FYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTV  253 (401)
T ss_dssp             TTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEE
T ss_pred             hhCcccCCeeecCCC-cceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEE
Confidence            556666777777655 45555443333455555555432 333432 2344455555555431                 


Q ss_pred             ---CCCCccC-cccCCCCCCCEEeccCCCCCc-----ccc-hhhhcCccccceecc
Q 038390          175 ---KNIECLP-NFISALKFPSTLNFSGLLKFR-----LFP-EIMGCIEHLLALRLL  220 (228)
Q Consensus       175 ---~~~~~lp-~~~~~l~~L~~L~l~~c~~l~-----~lp-~~~~~l~~L~~L~l~  220 (228)
                         +.++.++ ..|.++++|+.+.+.+ +.+.     .++ ..+..+++|+.+++.
T Consensus       254 ~lp~~i~~I~~~aF~~c~~L~~l~l~~-~~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          254 KLPNGVTNIASRAFYYCPELAEVTTYG-STFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             EEETTCCEECTTTTTTCTTCCEEEEES-SCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             EeCCCccEEChhHhhCCCCCCEEEeCC-ccccCCcccEECHHHhhCCccCCeEEeC
Confidence               1123332 2345566666666655 2222     243 345666666666665

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.24  E-value=0.00044  Score=52.30  Aligned_cols=109  Identities=16%  Similarity=0.062  Sum_probs=68.0

Q ss_pred             cccCCccEEEccCCCCCcc-----cchhhcCCCCcceEEccCCccc-----ccchhcCCCCCCcEEeccCCCCCCc----
Q 038390          114 IFMKSPKTLILSGCSKLKK-----FPEIVGNMKFLRQLLLDGTDIK-----GLLLSIVLLSGIVQLNLKGCKNIEC----  179 (228)
Q Consensus       114 ~~l~~L~~L~ls~~~~l~~-----~p~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~----  179 (228)
                      ..-+.|+.|+|+++..++.     +-+.+..-+.|+.|+|++|.+.     .+...+..=+.|+.|+|++|. ++.    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~  116 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLA  116 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHH
Confidence            3445678888887534432     4556666778888888888776     234445555678888888764 332    


Q ss_pred             -cCcccCCCCCCCEEeccCCC--CCc-----ccchhhhcCccccceeccccC
Q 038390          180 -LPNFISALKFPSTLNFSGLL--KFR-----LFPEIMGCIEHLLALRLLGTA  223 (228)
Q Consensus       180 -lp~~~~~l~~L~~L~l~~c~--~l~-----~lp~~~~~l~~L~~L~l~~n~  223 (228)
                       +-..+..=+.|+.|+|++|.  .++     .+.+.+..=++|+.|+++.|.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence             22334444668888887532  333     244455555778888887664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.88  E-value=0.0071  Score=50.38  Aligned_cols=103  Identities=8%  Similarity=0.071  Sum_probs=57.2

Q ss_pred             ccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~  189 (228)
                      +..+..|+.+.+...  +..+ ...+.++..|+.+.+. +.+..++. .+.++.+|+.+.+..  .++.+.. .|.+|++
T Consensus       261 F~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          261 FDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred             eeecccccEEecccc--cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCC
Confidence            445556666666432  2222 2345556666666664 33445543 355666777777654  2445533 4566677


Q ss_pred             CCEEeccCCCCCcccc-hhhhcCccccceecccc
Q 038390          190 PSTLNFSGLLKFRLFP-EIMGCIEHLLALRLLGT  222 (228)
Q Consensus       190 L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n  222 (228)
                      |+.+.+..  .++.+. ..+.++++|+.+++.++
T Consensus       336 L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          336 LERIAIPS--SVTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence            77776643  355555 35666667776666654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.69  E-value=0.0031  Score=44.25  Aligned_cols=53  Identities=19%  Similarity=0.206  Sum_probs=40.0

Q ss_pred             ceEEccCCccc--ccchhcCCCCCCcEEeccCCCCCCccCc-ccCCCCCCCEEeccCCC
Q 038390          144 RQLLLDGTDIK--GLLLSIVLLSGIVQLNLKGCKNIECLPN-FISALKFPSTLNFSGLL  199 (228)
Q Consensus       144 ~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~c~  199 (228)
                      ..++.+++.++  .+|..+.  .+|+.|+|++| .++.+|. .|..+++|+.|+|++|.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence            36788888888  8886433  47899999986 4777765 46778899999998843

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.69  E-value=0.0058  Score=50.91  Aligned_cols=105  Identities=12%  Similarity=0.212  Sum_probs=71.8

Q ss_pred             ccccCCccEEEccCCCCCcccch-hhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~  189 (228)
                      +.+++.|+.+.+..  .+..+++ .|.++.+|+.+++..+ ++.+.. .+.++.+|+.+.+..+  ++.+.. .|.+|++
T Consensus       284 F~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~  358 (394)
T 4gt6_A          284 FMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTA  358 (394)
T ss_dssp             TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTT
T ss_pred             cccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCC
Confidence            67889999999974  4667754 6788999999999864 666644 5788999999999753  666754 6889999


Q ss_pred             CCEEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390          190 PSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       190 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  225 (228)
                      |+.+++.++.  ..+ ..+..+.+|+.+.+..+.+.
T Consensus       359 L~~i~~~~~~--~~~-~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          359 LNNIEYSGSR--SQW-NAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             CCEEEESSCH--HHH-HTCBCCCCC-----------
T ss_pred             CCEEEECCce--eeh-hhhhccCCCCEEEeCCCCEE
Confidence            9999998732  222 45667788999988877653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.41  E-value=0.025  Score=46.62  Aligned_cols=102  Identities=12%  Similarity=0.095  Sum_probs=58.5

Q ss_pred             ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~  189 (228)
                      +..+..|+.+.+..+  +..+. ..+.++.+|+.+.+..+ +..++. .+.++.+|+.+.+.++ .++.++. .|.++.+
T Consensus       236 f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~  311 (379)
T 4h09_A          236 FYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVK  311 (379)
T ss_dssp             TTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTT
T ss_pred             ccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceecccccccccccccccccccc-ccceehhhhhcCCCC
Confidence            445556666666543  44442 34555666666666543 444433 3566677777777653 3455543 4667777


Q ss_pred             CCEEeccCCCCCcccch-hhhcCccccceecc
Q 038390          190 PSTLNFSGLLKFRLFPE-IMGCIEHLLALRLL  220 (228)
Q Consensus       190 L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~  220 (228)
                      |+.+.+..  .++.+++ .+.++.+|+.+.+.
T Consensus       312 L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          312 LSSVTLPT--ALKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred             CCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence            77777753  3556653 46666777776664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.38  E-value=0.0046  Score=43.34  Aligned_cols=52  Identities=15%  Similarity=0.158  Sum_probs=35.3

Q ss_pred             EEEccCCCCCc--ccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCC
Q 038390          121 TLILSGCSKLK--KFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCK  175 (228)
Q Consensus       121 ~L~ls~~~~l~--~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~  175 (228)
                      .++.+++ .++  .+|..+.  .+|++|+|++|.|+.+|.. +..+++|+.|+|.+|.
T Consensus        12 ~v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRR-GLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSS-CCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCC-CCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            5566655 455  6665332  3678888888888887654 5667788888888765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.31  E-value=0.011  Score=49.11  Aligned_cols=101  Identities=15%  Similarity=0.097  Sum_probs=57.1

Q ss_pred             ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~  189 (228)
                      +..+..++.+.....    .++ ..+..+.+|+.+.+..+ ++.++. .+.++++|+.+++..  .++.+.. .|.+|++
T Consensus       272 F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~  344 (394)
T 4fs7_A          272 FYNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTS  344 (394)
T ss_dssp             TTTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTT
T ss_pred             cccccccceeccCce----eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCC
Confidence            444555555555432    122 23556667777766543 444533 456667777777754  2455533 4666777


Q ss_pred             CCEEeccCCCCCcccc-hhhhcCccccceecccc
Q 038390          190 PSTLNFSGLLKFRLFP-EIMGCIEHLLALRLLGT  222 (228)
Q Consensus       190 L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n  222 (228)
                      |+.+.+..  .++.++ ..+.++.+|+.+++..+
T Consensus       345 L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          345 LSNINFPL--SLRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CCEECCCT--TCCEECTTTBTTCTTCCEEEEEGG
T ss_pred             CCEEEECc--cccEehHHHhhCCCCCCEEEECCC
Confidence            77777654  255555 35666677777766543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.20  E-value=0.02  Score=47.26  Aligned_cols=94  Identities=17%  Similarity=0.190  Sum_probs=70.6

Q ss_pred             ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~  189 (228)
                      +.++.+|+.+.+..  .+..++ ..+..+.+|+.+.+.++.++.++. .+.++.+|+.+.+..  .++.+.. .|.+|++
T Consensus       259 F~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~  334 (379)
T 4h09_A          259 LQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKA  334 (379)
T ss_dssp             TTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred             cceeehhccccccc--cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCC
Confidence            66788899999875  366665 467889999999999998988864 578899999999975  3667754 5788999


Q ss_pred             CCEEeccCCCCCcccch-hhhcCc
Q 038390          190 PSTLNFSGLLKFRLFPE-IMGCIE  212 (228)
Q Consensus       190 L~~L~l~~c~~l~~lp~-~~~~l~  212 (228)
                      |+.+.+..  .++.+.+ .+.++.
T Consensus       335 L~~i~ip~--~v~~I~~~aF~~c~  356 (379)
T 4h09_A          335 LSTISYPK--SITLIESGAFEGSS  356 (379)
T ss_dssp             CCCCCCCT--TCCEECTTTTTTSS
T ss_pred             CCEEEECC--ccCEEchhHhhCCC
Confidence            99888854  3555543 344443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.98  E-value=0.033  Score=46.23  Aligned_cols=97  Identities=8%  Similarity=-0.030  Sum_probs=54.4

Q ss_pred             ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccc-hhcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLL-LSIVLLSGIVQLNLKGCKNIECLPN-FISALKF  189 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~  189 (228)
                      +..+.+|+.+.+..+  +..++ ..+.++.+|+.+++..+ ++.++ ..+.++++|+.+.+..+  ++.+.. .|.+|++
T Consensus       293 F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCIN  367 (394)
T ss_dssp             TTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTT
T ss_pred             ccccccccccccccc--cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCC
Confidence            455666666666543  44443 34566666777766543 55553 24566667777766542  445533 4566667


Q ss_pred             CCEEeccCCCCCcccchhhhcCccccc
Q 038390          190 PSTLNFSGLLKFRLFPEIMGCIEHLLA  216 (228)
Q Consensus       190 L~~L~l~~c~~l~~lp~~~~~l~~L~~  216 (228)
                      |+.+++..  .+..+...+.++++|+.
T Consensus       368 L~~i~lp~--~~~~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          368 LKKVELPK--RLEQYRYDFEDTTKFKW  392 (394)
T ss_dssp             CCEEEEEG--GGGGGGGGBCTTCEEEE
T ss_pred             CCEEEECC--CCEEhhheecCCCCCcE
Confidence            77766654  23444444555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.28  E-value=0.023  Score=42.74  Aligned_cols=87  Identities=10%  Similarity=0.078  Sum_probs=61.4

Q ss_pred             chhhcCCCCcceEEccCC-ccc-----ccchhcCCCCCCcEEeccCCCCCCc-----cCcccCCCCCCCEEeccCCCCCc
Q 038390          134 PEIVGNMKFLRQLLLDGT-DIK-----GLLLSIVLLSGIVQLNLKGCKNIEC-----LPNFISALKFPSTLNFSGLLKFR  202 (228)
Q Consensus       134 p~~~~~l~~L~~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~c~~l~  202 (228)
                      ...+..-+.|++|+|+++ .|.     .+-..+..-+.|+.|+|++|. +++     +...+..=+.|+.|+|++ +.++
T Consensus        34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig  111 (197)
T 1pgv_A           34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVES-NFLT  111 (197)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCS-SBCC
T ss_pred             HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCC-CcCC
Confidence            334455678999999985 775     355667777899999999975 332     223333447899999999 5554


Q ss_pred             -----ccchhhhcCccccceecccc
Q 038390          203 -----LFPEIMGCIEHLLALRLLGT  222 (228)
Q Consensus       203 -----~lp~~~~~l~~L~~L~l~~n  222 (228)
                           .+-+.+..-+.|+.|+|++|
T Consensus       112 ~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          112 PELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHHHHhhCCceeEEECCCC
Confidence                 24455666678999999865

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=87.19  E-value=0.41  Score=35.22  Aligned_cols=42  Identities=12%  Similarity=0.080  Sum_probs=38.7

Q ss_pred             CCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHH-HhcC
Q 038390            3 SISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIV-EWKN   44 (228)
Q Consensus         3 ~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~-~c~~   44 (228)
                      .|.+.|.++|..|+..|++.+++...+.|=.+|+..-. ++..
T Consensus        68 tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~~~~~  110 (189)
T 3hyn_A           68 TLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIGTKGL  110 (189)
T ss_dssp             THHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTTTTCC
T ss_pred             HHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHHhcCC
Confidence            46788999999999999999999999999999999999 8777

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	228
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.6
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.46
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.45
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.43
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.41
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.41
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.41
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.39
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.39
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.37
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.35
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.35
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.32
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.31
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.29
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.27
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.25
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.22
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.19
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.15
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.09
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.06
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.0
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.98
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.97
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.93
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.88
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.55
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.38
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.31
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.22
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.02
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.89
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.87
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.72
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	97.49
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	97.48
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.03
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.66

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=2e-16  Score=110.70  Aligned_cols=102  Identities=15%  Similarity=0.187  Sum_probs=73.2

Q ss_pred             cEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEeccCCC
Q 038390          120 KTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSGLL  199 (228)
Q Consensus       120 ~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~  199 (228)
                      ++|++++| .+..++. ++.+++|++|++++|.++++|+.++.+++|+.|++++| .++.+|. ++.+++|++|++++ +
T Consensus         1 R~L~Ls~n-~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~~-~~~l~~L~~L~l~~-N   75 (124)
T d1dcea3           1 RVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDG-VANLPRLQELLLCN-N   75 (124)
T ss_dssp             SEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCS-S
T ss_pred             CEEEcCCC-CCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccc-cccccCc-cccccccCeEECCC-C
Confidence            46777777 5666664 67777777788877777777777777777888877775 4566654 77777778887777 5


Q ss_pred             CCcccc--hhhhcCccccceeccccCCCC
Q 038390          200 KFRLFP--EIMGCIEHLLALRLLGTAIRG  226 (228)
Q Consensus       200 ~l~~lp--~~~~~l~~L~~L~l~~n~l~~  226 (228)
                      .++.+|  ..++.+++|+.|++++|.++.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            666665  356777777778887777654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.2e-15  Score=111.72  Aligned_cols=112  Identities=14%  Similarity=0.137  Sum_probs=80.7

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcc-cCCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNF-ISALKFPS  191 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~  191 (228)
                      +.+..++++|+|++| .+..+|..+..+++|+.|++++|.+++++ .+..+++|+.|++++|. +..+|.. +..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCC-CCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccccc-ccCCCccccccccccc
Confidence            556667788888877 67777766667778888888888887774 47777888888888764 5666554 35677888


Q ss_pred             EEeccCCCCCcccch--hhhcCccccceeccccCCCCCC
Q 038390          192 TLNFSGLLKFRLFPE--IMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       192 ~L~l~~c~~l~~lp~--~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +|++++ +.++.+++  .+..+++|++|++++|.++.+|
T Consensus        91 ~L~L~~-N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          91 ELILTN-NSLVELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             EEECCS-CCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             cceecc-ccccccccccccccccccchhhcCCCcccccc
Confidence            888887 56666663  5677788888888888776543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.50  E-value=7.2e-14  Score=104.69  Aligned_cols=117  Identities=17%  Similarity=0.148  Sum_probs=94.5

Q ss_pred             ccccccccccccccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCcccccc-hhcCCCCCCcEEeccCCCCCC
Q 038390          101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGLL-LSIVLLSGIVQLNLKGCKNIE  178 (228)
Q Consensus       101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~  178 (228)
                      +++.+|..    +.  +++++|+|++|.....+ +..++.+++|++|++++|.+..++ ..+..+++|+.|++++| .+.
T Consensus        19 ~L~~iP~~----lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~   91 (192)
T d1w8aa_          19 GLKEIPRD----IP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIK   91 (192)
T ss_dssp             CCSSCCSC----CC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCC
T ss_pred             CcCccCCC----CC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc-ccc
Confidence            56667654    32  57999999999443434 456788999999999999998775 46788999999999997 466


Q ss_pred             ccCc-ccCCCCCCCEEeccCCCCCcccc-hhhhcCccccceeccccCCC
Q 038390          179 CLPN-FISALKFPSTLNFSGLLKFRLFP-EIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       179 ~lp~-~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n~l~  225 (228)
                      .+|+ .|.++++|++|+|++ +.++.+| +.+..+++|++|+|++|.+.
T Consensus        92 ~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          92 EISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccCHHHHhCCCcccccccCC-ccccccCHHHhcCCcccccccccccccc
Confidence            7754 688999999999999 6788886 46789999999999999876

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=2.2e-13  Score=94.89  Aligned_cols=109  Identities=15%  Similarity=0.127  Sum_probs=89.0

Q ss_pred             cccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCc
Q 038390          100 HSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIEC  179 (228)
Q Consensus       100 ~~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~  179 (228)
                      .+++.++.     +..+++|++|++++| .++.+|+.++.+++|+.|++++|.++.+| .+..+++|+.|++++| .+..
T Consensus         8 n~l~~l~~-----l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N-~i~~   79 (124)
T d1dcea3           8 KDLTVLCH-----LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQ   79 (124)
T ss_dssp             SCCSSCCC-----GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCS
T ss_pred             CCCCCCcc-----cccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCC-ccCC
Confidence            35566665     889999999999998 78899988999999999999999999997 4899999999999996 4666


Q ss_pred             cC--cccCCCCCCCEEeccCCCCCcccc---h-hhhcCccccce
Q 038390          180 LP--NFISALKFPSTLNFSGLLKFRLFP---E-IMGCIEHLLAL  217 (228)
Q Consensus       180 lp--~~~~~l~~L~~L~l~~c~~l~~lp---~-~~~~l~~L~~L  217 (228)
                      +|  ..++.+++|++|++++ |.+...+   + ....+++|+.+
T Consensus        80 ~~~~~~l~~~~~L~~L~l~~-N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          80 SAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCchhhcCCCCCCEEECCC-CcCCcCccHHHHHHHHCcCcceE
Confidence            65  3578899999999999 5565443   2 34556777655

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.6e-13  Score=106.61  Aligned_cols=113  Identities=21%  Similarity=0.264  Sum_probs=46.1

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L  190 (228)
                      ++.+++|++|++++| .+...+..+..+++|++|+++++.+.+++. .+..+.+++.|++.+| .+..+|. .+..+++|
T Consensus        73 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l  150 (266)
T d1p9ag_          73 DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKL  150 (266)
T ss_dssp             CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTC
T ss_pred             ccccccccccccccc-cccccccccccccccccccccccccceeecccccccccccccccccc-ccceeccccccccccc
Confidence            344455555555554 344444444444444444444444333321 1222333333333332 1222222 22334444


Q ss_pred             CEEeccCCCCCcccc-hhhhcCccccceeccccCCCCCC
Q 038390          191 STLNFSGLLKFRLFP-EIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +.+++++ +.++.+| +.++.+++|++|+|++|.|+.||
T Consensus       151 ~~l~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp  188 (266)
T d1p9ag_         151 EKLSLAN-NNLTELPAGLLNGLENLDTLLLQENSLYTIP  188 (266)
T ss_dssp             CEEECTT-SCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             hhccccc-ccccccCccccccccccceeecccCCCcccC
Confidence            4444444 2333333 23444444444444444444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=4.9e-13  Score=101.47  Aligned_cols=110  Identities=25%  Similarity=0.294  Sum_probs=70.1

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCC----------------
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKN----------------  176 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~----------------  176 (228)
                      +..+++|++|++++| .+..++. ++.+++|++|++++|.++.+| .+..+++|+.|++.+|..                
T Consensus        64 l~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~  140 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLY  140 (210)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEE
T ss_pred             HhhCCCCCEEeCCCc-cccCccc-cccCccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            455666666666665 4555543 455666666666666666555 355556666666655432                


Q ss_pred             -----CCccCcccCCCCCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          177 -----IECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       177 -----~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                           +... ..+..+++|+++++++ +.+..+++ ++.+++|+.|++++|.|+++|
T Consensus       141 ~~~n~l~~~-~~~~~l~~L~~l~l~~-n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~  194 (210)
T d1h6ta2         141 LGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP-LAGLTKLQNLYLSKNHISDLR  194 (210)
T ss_dssp             CCSSCCCCC-GGGGGCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred             ccccccccc-cccccccccccccccc-cccccccc-ccCCCCCCEEECCCCCCCCCh
Confidence                 2222 2345677888888888 45667664 778899999999999888764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.43  E-value=4.8e-14  Score=113.30  Aligned_cols=118  Identities=17%  Similarity=0.219  Sum_probs=97.2

Q ss_pred             cccccccccccccCCccEEEccCCCC-CcccchhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCccC
Q 038390          104 SSHPFQNLRLIFMKSPKTLILSGCSK-LKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECLP  181 (228)
Q Consensus       104 ~l~~~~nl~~~~l~~L~~L~ls~~~~-l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp  181 (228)
                      .+|.+    +++|++|++|+|++|+. .+.+|..++++++|++|++++|.+..+ |..+..+.+|+.+++++|.....+|
T Consensus        67 ~lp~~----l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p  142 (313)
T d1ogqa_          67 PIPSS----LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP  142 (313)
T ss_dssp             ECCGG----GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred             CCChH----HhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCc
Confidence            35555    88999999999987434 457899999999999999999988876 4457888899999999988777888


Q ss_pred             cccCCCCCCCEEeccCCCCCcccchhhhcCccc-cceeccccCCC
Q 038390          182 NFISALKFPSTLNFSGLLKFRLFPEIMGCIEHL-LALRLLGTAIR  225 (228)
Q Consensus       182 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L-~~L~l~~n~l~  225 (228)
                      ..++++++|+.+++++|.....+|..++.+..+ +.+++++|+++
T Consensus       143 ~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~  187 (313)
T d1ogqa_         143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             hhhccCcccceeecccccccccccccccccccccccccccccccc
Confidence            899999999999999855555888888888776 78888888775

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.41  E-value=3.2e-13  Score=101.04  Aligned_cols=106  Identities=20%  Similarity=0.195  Sum_probs=89.1

Q ss_pred             ccEEEccCCCCCcccchhhcCCCCcceEEccCCcccc-c-chhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEecc
Q 038390          119 PKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKG-L-LLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFS  196 (228)
Q Consensus       119 L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~-l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~  196 (228)
                      .++++.+++ .+..+|..+.  +++++|+|++|.|+. + +..++.+++|+.|++++|......+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~-~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGR-GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTS-CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCC-CcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            467888887 7888997654  689999999999975 4 3457889999999999976555556788899999999999


Q ss_pred             CCCCCcccc-hhhhcCccccceeccccCCCCCC
Q 038390          197 GLLKFRLFP-EIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       197 ~c~~l~~lp-~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      + +.++.+| ..|.++++|++|+|++|.|+.+|
T Consensus        87 ~-N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~  118 (192)
T d1w8aa_          87 E-NKIKEISNKMFLGLHQLKTLNLYDNQISCVM  118 (192)
T ss_dssp             S-CCCCEECSSSSTTCTTCCEEECCSSCCCEEC
T ss_pred             c-ccccccCHHHHhCCCcccccccCCccccccC
Confidence            9 6888887 46899999999999999998765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.41  E-value=1.1e-13  Score=111.23  Aligned_cols=112  Identities=23%  Similarity=0.358  Sum_probs=97.0

Q ss_pred             CCccEEEccCCCCCc--ccchhhcCCCCcceEEccC-Cccc-ccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          117 KSPKTLILSGCSKLK--KFPEIVGNMKFLRQLLLDG-TDIK-GLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       117 ~~L~~L~ls~~~~l~--~~p~~~~~l~~L~~L~l~~-~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      .+++.|+|+++...+  .+|+.++++++|++|+|++ |.+. .+|.+++++++|++|++++|...+..|..+..+.+|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            357899999985444  5789999999999999986 6666 79999999999999999998765556777889999999


Q ss_pred             EeccCCCCCcccchhhhcCccccceeccccCCC-CCC
Q 038390          193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR-GLP  228 (228)
Q Consensus       193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~-~lP  228 (228)
                      +++++|.....+|..++.++.|+.+++++|.++ .+|
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip  166 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP  166 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccc
Confidence            999997777789999999999999999999886 444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=1.8e-12  Score=97.50  Aligned_cols=109  Identities=17%  Similarity=0.233  Sum_probs=66.3

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      +.++++|++|++++| .+..++. ++.++.|+.|+++++.+..++ .+..+++|+.|++++|. +..++ .+..+++|+.
T Consensus        80 l~~l~~L~~L~l~~n-~~~~~~~-l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~-~l~~~~~L~~  154 (199)
T d2omxa2          80 LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQ  154 (199)
T ss_dssp             GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSE
T ss_pred             ccCCccccccccccc-ccccccc-ccccccccccccccccccccc-ccchhhhhHHhhhhhhh-hcccc-cccccccccc
Confidence            444455555555544 2333332 444555555555555444433 35556666666666653 44444 3667777888


Q ss_pred             EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      |++.+ +.++.+++ ++.+++|++|++++|.|+++|
T Consensus       155 L~l~~-n~l~~l~~-l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         155 LNFSS-NQVTDLKP-LANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             EECCS-SCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             ccccc-ccccCCcc-ccCCCCCCEEECCCCCCCCCc
Confidence            88877 45666653 778899999999999888764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.4e-12  Score=102.29  Aligned_cols=111  Identities=17%  Similarity=0.094  Sum_probs=95.9

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccC-cccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLP-NFISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L  190 (228)
                      +..+++|+.|++++|...+..+..+..+.++++|++++|.+..+|.. +..+++|+.+++++|+ ++.+| ..+..+++|
T Consensus        96 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~-l~~~~~~~~~~l~~L  174 (266)
T d1p9ag_          96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENL  174 (266)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTC
T ss_pred             cccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc-ccccCcccccccccc
Confidence            77899999999999965555566778899999999999999998765 5678999999999975 56665 458899999


Q ss_pred             CEEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390          191 STLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  225 (228)
                      ++|+|++ |.++.+|+.+..+++|+.|+|++|.+.
T Consensus       175 ~~L~Ls~-N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         175 DTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CEEECCS-SCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ceeeccc-CCCcccChhHCCCCCCCEEEecCCCCC
Confidence            9999999 678999999999999999999999764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.39  E-value=2.5e-12  Score=96.66  Aligned_cols=109  Identities=14%  Similarity=0.209  Sum_probs=91.6

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      +..+++|++|++++| .+..+++ ++++++|++|++++|.+..++. +.++++|+.|++++|.. ..++ .+..+++|+.
T Consensus        58 l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~~~~-~~~~-~~~~l~~L~~  132 (199)
T d2omxa2          58 VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQI-TDID-PLKNLTNLNR  132 (199)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC-CCCG-GGTTCTTCSE
T ss_pred             cccCCCcCcCccccc-cccCccc-ccCCcccccccccccccccccc-ccccccccccccccccc-cccc-ccchhhhhHH
Confidence            788999999999998 6777775 8899999999999999988874 88999999999998654 3333 4788999999


Q ss_pred             EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      |++++ +.+..+| .+..+++|+.|++.+|.++++|
T Consensus       133 L~l~~-n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~  166 (199)
T d2omxa2         133 LELSS-NTISDIS-ALSGLTSLQQLNFSSNQVTDLK  166 (199)
T ss_dssp             EECCS-SCCCCCG-GGTTCTTCSEEECCSSCCCCCG
T ss_pred             hhhhh-hhhcccc-cccccccccccccccccccCCc
Confidence            99998 4567665 5788999999999999988764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.37  E-value=2.9e-15  Score=113.13  Aligned_cols=117  Identities=22%  Similarity=0.177  Sum_probs=93.8

Q ss_pred             cccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCc
Q 038390          100 HSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIEC  179 (228)
Q Consensus       100 ~~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~  179 (228)
                      +.++.++.+    +..|++|++|+|++| .++.++ .+..+++|+.|++++|.++.+|.....+++|+.|++++| .++.
T Consensus        35 ~~i~~l~~s----l~~L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N-~i~~  107 (198)
T d1m9la_          35 PPIEKMDAT----LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIAS  107 (198)
T ss_dssp             TTCCCCHHH----HHHTTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE-ECCC
T ss_pred             CchhhhhhH----HhcccccceeECccc-CCCCcc-cccCCccccChhhcccccccccccccccccccccccccc-cccc
Confidence            456667666    888999999999988 577776 478889999999999999888866666678999999886 4666


Q ss_pred             cCcccCCCCCCCEEeccCCCCCcccc--hhhhcCccccceeccccCCC
Q 038390          180 LPNFISALKFPSTLNFSGLLKFRLFP--EIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       180 lp~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~  225 (228)
                      ++ .+..+++|++|++++ +.++.++  ..++.+++|+.|++++|.+.
T Consensus       108 l~-~~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         108 LS-GIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HH-HHHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cc-ccccccccccccccc-chhccccccccccCCCccceeecCCCccc
Confidence            64 377888999999998 5677776  46788999999999998653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3e-12  Score=101.25  Aligned_cols=107  Identities=21%  Similarity=0.247  Sum_probs=46.1

Q ss_pred             cCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEE
Q 038390          116 MKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTL  193 (228)
Q Consensus       116 l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L  193 (228)
                      +++|+.+++++| .++.+| ..+..+++|+.|++++|.++.+|. .+..+++|+.+++.+|+.....|..|.++++|++|
T Consensus       128 ~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L  206 (284)
T d1ozna_         128 LAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL  206 (284)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             hcccchhhhccc-cccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccc
Confidence            334444444444 233332 233444444444444444444422 33444444444444443322224444444555555


Q ss_pred             eccCCCCCcccc-hhhhcCccccceeccccCC
Q 038390          194 NFSGLLKFRLFP-EIMGCIEHLLALRLLGTAI  224 (228)
Q Consensus       194 ~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n~l  224 (228)
                      ++++ +.+..+| ..++.+++|++|++++|.+
T Consensus       207 ~l~~-N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         207 YLFA-NNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             ECCS-SCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             cccc-cccccccccccccccccCEEEecCCCC
Confidence            5544 2233332 3444455555555555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.4e-12  Score=95.02  Aligned_cols=113  Identities=12%  Similarity=0.073  Sum_probs=91.8

Q ss_pred             cccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhc-CCCCCCcEEeccCCCCCC
Q 038390          100 HSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSI-VLLSGIVQLNLKGCKNIE  178 (228)
Q Consensus       100 ~~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~  178 (228)
                      ..++.++..    ...+++|+.|++++| .+..++ .+..+++|++|++++|.+..+|+.+ ..+++|+.|++++|. ++
T Consensus        28 n~I~~i~~~----~~~l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~-i~  100 (162)
T d1a9na_          28 YKIPVIENL----GATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LV  100 (162)
T ss_dssp             SCCCSCCCG----GGGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CC
T ss_pred             CCCCccCcc----ccccccCCEEECCCC-CCCccC-CcccCcchhhhhcccccccCCCccccccccccccceecccc-cc
Confidence            345555553    577899999999999 677875 4788999999999999999998754 679999999999974 66


Q ss_pred             ccCc--ccCCCCCCCEEeccCCCCCcccch----hhhcCccccceecc
Q 038390          179 CLPN--FISALKFPSTLNFSGLLKFRLFPE----IMGCIEHLLALRLL  220 (228)
Q Consensus       179 ~lp~--~~~~l~~L~~L~l~~c~~l~~lp~----~~~~l~~L~~L~l~  220 (228)
                      .++.  .+..+++|++|++++ +.+...|.    .+..+++|+.||-.
T Consensus       101 ~~~~l~~l~~l~~L~~L~l~~-N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_         101 ELGDLDPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CGGGGGGGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ccccccccccccccchhhcCC-CccccccchHHHHHHHCCCcCeeCCC
Confidence            6653  578899999999999 56777764    57889999998843

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=1.1e-11  Score=94.75  Aligned_cols=64  Identities=16%  Similarity=0.223  Sum_probs=45.9

Q ss_pred             CCCCCCcEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          161 VLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       161 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      ...++|+.|++.+|. +...+ .++++++|+.|++++| .++.+|+ ++.+++|++|++++|+|+++|
T Consensus       148 ~~~~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~  211 (227)
T d1h6ua2         148 AGLTNLQYLSIGNAQ-VSDLT-PLANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQISDVS  211 (227)
T ss_dssp             GGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSCCCBCG
T ss_pred             ccccccccccccccc-cccch-hhcccccceecccCCC-ccCCChh-hcCCCCCCEEECcCCcCCCCc
Confidence            334456666665543 23333 3778899999999984 6788765 788899999999999988764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.31  E-value=7.9e-12  Score=99.62  Aligned_cols=109  Identities=14%  Similarity=0.090  Sum_probs=86.5

Q ss_pred             ccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccc-hhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEE
Q 038390          115 FMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLL-LSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTL  193 (228)
Q Consensus       115 ~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L  193 (228)
                      .+++|+.|++++|......+..+..++.+++|++++|.+..++ ..+.++++|++|+|++| .++.+|..+..+++|++|
T Consensus       169 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L  247 (305)
T d1xkua_         169 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVV  247 (305)
T ss_dssp             CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEE
T ss_pred             cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccc-cccccccccccccCCCEE
Confidence            4677888888888666667778888888899999888888774 45677888999999886 577888888888999999


Q ss_pred             eccCCCCCcccchh-------hhcCccccceeccccCCC
Q 038390          194 NFSGLLKFRLFPEI-------MGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       194 ~l~~c~~l~~lp~~-------~~~l~~L~~L~l~~n~l~  225 (228)
                      ++++ +.++.++..       ...+.+|+.|++++|.++
T Consensus       248 ~Ls~-N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         248 YLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             ECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ECCC-CccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            9988 567776532       345678888999988876

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.7e-12  Score=99.20  Aligned_cols=115  Identities=20%  Similarity=0.272  Sum_probs=96.8

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccC-cccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLP-NFISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L  190 (228)
                      +.++++|++|++++|......+..++.+.+|+.+++++|.++.+|. .+..+++|+.|++++|. +..+| ..+.++++|
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~-l~~l~~~~f~~l~~L  179 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSL  179 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred             hcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCc-ccccchhhhcccccc
Confidence            7889999999999995444445677888999999999999999865 57789999999999975 56664 567899999


Q ss_pred             CEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          191 STLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      +.+++++|......|..++.+++|++|++++|.++.+|
T Consensus       180 ~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~  217 (284)
T d1ozna_         180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (284)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             chhhhhhccccccChhHhhhhhhccccccccccccccc
Confidence            99999995444455789999999999999999998775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.7e-11  Score=88.52  Aligned_cols=85  Identities=16%  Similarity=0.086  Sum_probs=59.3

Q ss_pred             ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccc-hhcCCCCCCcEEeccCCCCCCccCcccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLL-LSIVLLSGIVQLNLKGCKNIECLPNFISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L  190 (228)
                      +..+++|++|++++++.++.++ +.|.++++|+.|++++|.++.++ ..+..+++|++|+|++| .++.+|..+....+|
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~~~l  105 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSL  105 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCC
T ss_pred             ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC-CCcccChhhhccccc
Confidence            5666777777777665666664 45677777888888877777774 34677777788888775 466776655555567


Q ss_pred             CEEeccCC
Q 038390          191 STLNFSGL  198 (228)
Q Consensus       191 ~~L~l~~c  198 (228)
                      +.|+|++|
T Consensus       106 ~~L~L~~N  113 (156)
T d2ifga3         106 QELVLSGN  113 (156)
T ss_dssp             CEEECCSS
T ss_pred             cccccCCC
Confidence            77777773

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.25  E-value=1.3e-11  Score=98.42  Aligned_cols=111  Identities=17%  Similarity=0.174  Sum_probs=93.0

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCcc-CcccCCCCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECL-PNFISALKFP  190 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L  190 (228)
                      +..+++|+.+++++| .+..+|..  ..++|++|++++|..... +..+..++.++.|++++|. +..+ +..+.++++|
T Consensus       146 ~~~l~~L~~l~l~~n-~l~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~-l~~~~~~~~~~l~~L  221 (305)
T d1xkua_         146 FQGMKKLSYIRIADT-NITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHL  221 (305)
T ss_dssp             GGGCTTCCEEECCSS-CCCSCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTC
T ss_pred             cccccccCccccccC-CccccCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccc-ccccccccccccccc
Confidence            677889999999988 56667754  357899999999977755 5678899999999999875 5555 5567889999


Q ss_pred             CEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          191 STLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       191 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      ++|++++ +.++.+|+.+..+++|++|++++|+|+.||
T Consensus       222 ~~L~L~~-N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~  258 (305)
T d1xkua_         222 RELHLNN-NKLVKVPGGLADHKYIQVVYLHNNNISAIG  258 (305)
T ss_dssp             CEEECCS-SCCSSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             eeeeccc-ccccccccccccccCCCEEECCCCccCccC
Confidence            9999999 578899999999999999999999998764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=2.9e-11  Score=98.77  Aligned_cols=82  Identities=16%  Similarity=0.146  Sum_probs=55.1

Q ss_pred             hcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCcccchhhhcCccccc
Q 038390          137 VGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLA  216 (228)
Q Consensus       137 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~  216 (228)
                      +..++++++|++++|.++++++ +..+++|+.|++++| .++.+| .++++++|++|++++ +.++.+|+ ++++++|+.
T Consensus       303 ~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~-N~l~~l~~-l~~l~~L~~  377 (384)
T d2omza2         303 ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGH-NQISDLTP-LANLTRITQ  377 (384)
T ss_dssp             GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCS-SCCCBCGG-GTTCTTCSE
T ss_pred             cchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCC-CcCCCChh-hccCCCCCE
Confidence            4556677777777777776653 666777777777775 455555 466777777777776 45666654 667777777


Q ss_pred             eeccccC
Q 038390          217 LRLLGTA  223 (228)
Q Consensus       217 L~l~~n~  223 (228)
                      |+|++|+
T Consensus       378 L~L~~Na  384 (384)
T d2omza2         378 LGLNDQA  384 (384)
T ss_dssp             EECCCEE
T ss_pred             eeCCCCc
Confidence            7777763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=7e-11  Score=89.30  Aligned_cols=82  Identities=16%  Similarity=0.195  Sum_probs=69.5

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST  192 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~  192 (228)
                      ...+.+|+.|++++| .++.++. +..+++|++|++++|.++.+++ ++.+++|++|++++| .++.+|. +..+++|+.
T Consensus        42 ~~~L~~L~~L~l~~~-~i~~l~~-l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n-~i~~l~~-l~~l~~L~~  116 (210)
T d1h6ta2          42 QNELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKS  116 (210)
T ss_dssp             HHHHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCE
T ss_pred             HHHhcCccEEECcCC-CCCCchh-HhhCCCCCEEeCCCccccCccc-cccCccccccccccc-ccccccc-ccccccccc
Confidence            346788999999998 6777664 7889999999999999999874 789999999999996 4777774 888999999


Q ss_pred             EeccCCC
Q 038390          193 LNFSGLL  199 (228)
Q Consensus       193 L~l~~c~  199 (228)
                      |++++|.
T Consensus       117 L~l~~~~  123 (210)
T d1h6ta2         117 LSLEHNG  123 (210)
T ss_dssp             EECTTSC
T ss_pred             ccccccc
Confidence            9998854

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.15  E-value=1.2e-10  Score=94.86  Aligned_cols=110  Identities=19%  Similarity=0.183  Sum_probs=78.5

Q ss_pred             ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccc---------------------hhcCCCCCCcEEec
Q 038390          113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLL---------------------LSIVLLSGIVQLNL  171 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp---------------------~~~~~l~~L~~L~l  171 (228)
                      +..+++|+.|++++| .+..++. ++.+++|++|+++++.+..++                     ..+..+++++.|++
T Consensus       237 l~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~l  314 (384)
T d2omza2         237 LASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL  314 (384)
T ss_dssp             GGGCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEEC
T ss_pred             hhcccccchhccccC-ccCCCCc-ccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEEC
Confidence            555666666666666 3444443 455666666666665444332                     23566778888999


Q ss_pred             cCCCCCCccCcccCCCCCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390          172 KGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP  228 (228)
Q Consensus       172 ~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP  228 (228)
                      ++| .++.++. +..+++|++|++++| .++.+| .++.+++|++|++++|.|+++|
T Consensus       315 s~n-~l~~l~~-l~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         315 YFN-NISDISP-VSSLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             CSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSSCCCBCG
T ss_pred             CCC-CCCCCcc-cccCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCCCcCCCCh
Confidence            886 4566654 788999999999995 788877 5889999999999999998764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.4e-10  Score=82.35  Aligned_cols=108  Identities=15%  Similarity=0.066  Sum_probs=90.0

Q ss_pred             ccCCccEEEccCCCCCcccchhhcCCCCcceEEccCC-cccccch-hcCCCCCCcEEeccCCCCCCcc-CcccCCCCCCC
Q 038390          115 FMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGT-DIKGLLL-SIVLLSGIVQLNLKGCKNIECL-PNFISALKFPS  191 (228)
Q Consensus       115 ~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~-~i~~lp~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~  191 (228)
                      .......++.+++ .+...|..+..+++|++|+++++ .++.++. .+.++++|+.|++++| .++.+ |..|..+++|+
T Consensus         6 ~c~~~~~l~c~~~-~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           6 CPHGSSGLRCTRD-GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             CCSSSSCEECCSS-CCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCC
T ss_pred             CcCCCCeEEecCC-CCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCccccccccccccc
Confidence            3445677888876 67777888999999999999876 5998864 5899999999999996 57777 45688999999


Q ss_pred             EEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390          192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR  225 (228)
Q Consensus       192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  225 (228)
                      +|+|++ |.++.+|..+-....|+.|+|++|.+.
T Consensus        84 ~L~Ls~-N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          84 RLNLSF-NALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EEECCS-SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ceeccC-CCCcccChhhhccccccccccCCCccc
Confidence            999999 789999976655668999999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.06  E-value=1.4e-12  Score=98.07  Aligned_cols=104  Identities=16%  Similarity=0.164  Sum_probs=85.2

Q ss_pred             cEEEccCC-CCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEeccCC
Q 038390          120 KTLILSGC-SKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSGL  198 (228)
Q Consensus       120 ~~L~ls~~-~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c  198 (228)
                      +.+++++. ..++.+|..+..+++|++|++++|.|+.++ .+..+++|+.|++++| .++.+|..+..+++|+.|++++ 
T Consensus        26 ~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~-  102 (198)
T d1m9la_          26 EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISY-  102 (198)
T ss_dssp             SCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSE-
T ss_pred             ceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccc-cccccccccccccccccccccc-
Confidence            33444432 346778888999999999999999999986 5888999999999997 4778887666667899999999 


Q ss_pred             CCCcccchhhhcCccccceeccccCCCCC
Q 038390          199 LKFRLFPEIMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       199 ~~l~~lp~~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      +.++.++ .+..+++|+.|++++|.|+++
T Consensus       103 N~i~~l~-~~~~l~~L~~L~L~~N~i~~~  130 (198)
T d1m9la_         103 NQIASLS-GIEKLVNLRVLYMSNNKITNW  130 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEECCCH
T ss_pred             ccccccc-cccccccccccccccchhccc
Confidence            5778775 478899999999999998764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.00  E-value=1.1e-09  Score=83.26  Aligned_cols=80  Identities=13%  Similarity=0.190  Sum_probs=68.8

Q ss_pred             hcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCcccchhhhcCccccc
Q 038390          137 VGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLA  216 (228)
Q Consensus       137 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~  216 (228)
                      +..+++|++|++++|.+...+. ++++++|+.|++++| .++.+|. +.++++|++|++++| .++.+|+ ++++++|+.
T Consensus       147 ~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~  221 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDVSP-LANTSNLFI  221 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCE
T ss_pred             hccccccccccccccccccchh-hcccccceecccCCC-ccCCChh-hcCCCCCCEEECcCC-cCCCCcc-cccCCCCCE
Confidence            5677889999999998877654 889999999999997 5777765 889999999999995 7888875 889999999


Q ss_pred             eeccc
Q 038390          217 LRLLG  221 (228)
Q Consensus       217 L~l~~  221 (228)
                      |++++
T Consensus       222 L~lsn  226 (227)
T d1h6ua2         222 VTLTN  226 (227)
T ss_dssp             EEEEE
T ss_pred             EEeeC
Confidence            99974

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=6.9e-10  Score=85.11  Aligned_cols=119  Identities=13%  Similarity=0.110  Sum_probs=85.8

Q ss_pred             ccccccccccccccccCCccEEEccCCCCCcccch-hhcCCCCcceEEccCCccccc-c-hhcCCCCCCcEEeccCCCCC
Q 038390          101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDIKGL-L-LSIVLLSGIVQLNLKGCKNI  177 (228)
Q Consensus       101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i~~l-p-~~~~~l~~L~~L~l~~~~~~  177 (228)
                      +++.+|..    +.  +++++|++++| .++.+|. .+.++++|++|++++|.+... | ..+.++++++.+.+..++.+
T Consensus        19 ~l~~iP~~----l~--~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l   91 (242)
T d1xwdc1          19 KVTEIPSD----LP--RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL   91 (242)
T ss_dssp             SCSSCCSC----SC--SCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTC
T ss_pred             CCCCcCCC----CC--CCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccc
Confidence            56677654    32  57899999998 6777765 578899999999999987654 3 35778899999998876666


Q ss_pred             CccC-cccCCCCCCCEEeccCCCCCcccch--hhhcCccccceeccccCCCCC
Q 038390          178 ECLP-NFISALKFPSTLNFSGLLKFRLFPE--IMGCIEHLLALRLLGTAIRGL  227 (228)
Q Consensus       178 ~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~--~~~~l~~L~~L~l~~n~l~~l  227 (228)
                      ..++ ..+.++++|+++++++ +.+...|.  .+..+..+..+...++.+..+
T Consensus        92 ~~~~~~~~~~l~~L~~l~l~~-~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i  143 (242)
T d1xwdc1          92 LYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTI  143 (242)
T ss_dssp             CEECTTSEECCTTCCEEEEES-CCCCSCCCCTTTCBSSCEEEEEESCTTCCEE
T ss_pred             cccccccccccccccccccch-hhhcccccccccccccccccccccccccccc
Confidence            6654 4578899999999998 45665553  344555565556666665543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.97  E-value=1.3e-09  Score=87.43  Aligned_cols=82  Identities=21%  Similarity=0.352  Sum_probs=51.7

Q ss_pred             CCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEecc
Q 038390          117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFS  196 (228)
Q Consensus       117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~  196 (228)
                      ++|++|++++| .++.+|+.   +.+|+.|++++|.++.++.-   .++|++|++++| .+..+|. ++.+++|++|+++
T Consensus        58 ~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n-~l~~lp~-~~~l~~L~~L~l~  128 (353)
T d1jl5a_          58 PHLESLVASCN-SLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN-QLEKLPE-LQNSSFLKIIDVD  128 (353)
T ss_dssp             TTCSEEECCSS-CCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS-CCSSCCC-CTTCTTCCEEECC
T ss_pred             CCCCEEECCCC-CCcccccc---hhhhhhhhhhhcccchhhhh---cccccccccccc-ccccccc-hhhhccceeeccc
Confidence            56777777766 66677754   34567777777776665521   135777777775 3566664 5677777777777


Q ss_pred             CCCCCcccchhh
Q 038390          197 GLLKFRLFPEIM  208 (228)
Q Consensus       197 ~c~~l~~lp~~~  208 (228)
                      + +.+...|...
T Consensus       129 ~-~~~~~~~~~~  139 (353)
T d1jl5a_         129 N-NSLKKLPDLP  139 (353)
T ss_dssp             S-SCCSCCCCCC
T ss_pred             c-cccccccccc
Confidence            6 3445555443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=8.1e-10  Score=87.16  Aligned_cols=110  Identities=20%  Similarity=0.199  Sum_probs=75.4

Q ss_pred             ccccCCccEEEccCCCCCcc--cchhhcC-CCCcceEEccCC--ccc--ccchhcCCCCCCcEEeccCCCCCCc-cCccc
Q 038390          113 LIFMKSPKTLILSGCSKLKK--FPEIVGN-MKFLRQLLLDGT--DIK--GLLLSIVLLSGIVQLNLKGCKNIEC-LPNFI  184 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~--~p~~~~~-l~~L~~L~l~~~--~i~--~lp~~~~~l~~L~~L~l~~~~~~~~-lp~~~  184 (228)
                      ...+++|++|++++|..+..  ++..+.. .++|+.|+++++  .++  .+..-..++++|+.|++++|..++. .+..+
T Consensus       117 ~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l  196 (284)
T d2astb2         117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  196 (284)
T ss_dssp             HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred             hHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhh
Confidence            34677888888888765532  2333333 357888888765  232  2333345678899999988876653 45567


Q ss_pred             CCCCCCCEEeccCCCCCcc-cchhhhcCccccceecccc
Q 038390          185 SALKFPSTLNFSGLLKFRL-FPEIMGCIEHLLALRLLGT  222 (228)
Q Consensus       185 ~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~n  222 (228)
                      .++++|++|++++|+.++. -...++.+++|+.|++++|
T Consensus       197 ~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         197 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            7888999999998887763 3356778888999988877

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=3.5e-09  Score=81.03  Aligned_cols=114  Identities=12%  Similarity=0.122  Sum_probs=71.7

Q ss_pred             ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccC-Ccccccc-hhcCCCCCCcEEeccCCCCCCccCc--ccCCC
Q 038390          113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDG-TDIKGLL-LSIVLLSGIVQLNLKGCKNIECLPN--FISAL  187 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~-~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l  187 (228)
                      +.++++|++|++++|.....+| ..+..++.+.++.+.. +.+..++ ..+.++++|+.+++.+|. +...+.  .+..+
T Consensus        49 f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l  127 (242)
T d1xwdc1          49 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSL  127 (242)
T ss_dssp             TTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCC-CCSCCCCTTTCBS
T ss_pred             hhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhh-hcccccccccccc
Confidence            5778888888888886555554 3567788888887654 4565554 456788888888888864 444443  12233


Q ss_pred             CCCCEEeccCCCCCcccc-hhhhcCc-cccceeccccCCCCCC
Q 038390          188 KFPSTLNFSGLLKFRLFP-EIMGCIE-HLLALRLLGTAIRGLP  228 (228)
Q Consensus       188 ~~L~~L~l~~c~~l~~lp-~~~~~l~-~L~~L~l~~n~l~~lP  228 (228)
                      ..+..+...+ +.+..++ ..+..++ .++.|++++|.++.+|
T Consensus       128 ~~l~~~~~~n-~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~  169 (242)
T d1xwdc1         128 QKVLLDIQDN-INIHTIERNSFVGLSFESVILWLNKNGIQEIH  169 (242)
T ss_dssp             SCEEEEEESC-TTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred             cccccccccc-cccccccccccccccccceeeecccccccccc
Confidence            3343333333 5566665 3444443 6777888888877543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.3e-09  Score=85.94  Aligned_cols=113  Identities=22%  Similarity=0.238  Sum_probs=75.5

Q ss_pred             ccccCCccEEEccCCCCCcc--cchhhcCCCCcceEEccCC-ccc--ccchhcCC-CCCCcEEeccCCC-CCCc--cCcc
Q 038390          113 LIFMKSPKTLILSGCSKLKK--FPEIVGNMKFLRQLLLDGT-DIK--GLLLSIVL-LSGIVQLNLKGCK-NIEC--LPNF  183 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~--~p~~~~~l~~L~~L~l~~~-~i~--~lp~~~~~-l~~L~~L~l~~~~-~~~~--lp~~  183 (228)
                      +.++++|++|++++|..++.  +......+++|++|++++| .+.  .++..+.. .++|+.|++++|. .++.  +...
T Consensus        91 l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l  170 (284)
T d2astb2          91 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL  170 (284)
T ss_dssp             HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH
T ss_pred             HhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccc
Confidence            56677788888887766643  3444556777888888775 333  22222322 3578888887753 2221  2333


Q ss_pred             cCCCCCCCEEeccCCCCCc-ccchhhhcCccccceecccc-CCC
Q 038390          184 ISALKFPSTLNFSGLLKFR-LFPEIMGCIEHLLALRLLGT-AIR  225 (228)
Q Consensus       184 ~~~l~~L~~L~l~~c~~l~-~lp~~~~~l~~L~~L~l~~n-~l~  225 (228)
                      ..++++|++|++++|..++ ..+..++.+++|++|++++| .++
T Consensus       171 ~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~  214 (284)
T d2astb2         171 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII  214 (284)
T ss_dssp             HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             ccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCC
Confidence            4568899999999988877 45567888999999999986 454

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.55  E-value=2.2e-07  Score=73.94  Aligned_cols=96  Identities=16%  Similarity=0.228  Sum_probs=53.8

Q ss_pred             CccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEeccC
Q 038390          118 SPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSG  197 (228)
Q Consensus       118 ~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~  197 (228)
                      ++++|||+++ .++.+|+.   +++|++|++++|.++++|..+   .+|+.|++.+|. +..++..   .++|++|++++
T Consensus        39 ~l~~LdLs~~-~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~-l~~l~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          39 QAHELELNNL-GLSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNN-LKALSDL---PPLLEYLGVSN  107 (353)
T ss_dssp             TCSEEECTTS-CCSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSC-CSCCCSC---CTTCCEEECCS
T ss_pred             CCCEEEeCCC-CCCCCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhhcc-cchhhhh---ccccccccccc
Confidence            4566666665 45566642   345666666666666666433   355666666542 3444321   13466666666


Q ss_pred             CCCCcccchhhhcCccccceeccccCCCC
Q 038390          198 LLKFRLFPEIMGCIEHLLALRLLGTAIRG  226 (228)
Q Consensus       198 c~~l~~lp~~~~~l~~L~~L~l~~n~l~~  226 (228)
                       +.+..+|+ ++.+++|+.|++++|.+..
T Consensus       108 -n~l~~lp~-~~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         108 -NQLEKLPE-LQNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             -SCCSSCCC-CTTCTTCCEEECCSSCCSC
T ss_pred             -cccccccc-hhhhccceeeccccccccc
Confidence             45566664 3556666666666666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=9e-08  Score=78.85  Aligned_cols=104  Identities=12%  Similarity=0.155  Sum_probs=48.4

Q ss_pred             CccEEEccCCCCCcc--cchhhcCCCCcceEEccCCccc-----ccchhcCCCCCCcEEeccCCCCCCc-----cCcccC
Q 038390          118 SPKTLILSGCSKLKK--FPEIVGNMKFLRQLLLDGTDIK-----GLLLSIVLLSGIVQLNLKGCKNIEC-----LPNFIS  185 (228)
Q Consensus       118 ~L~~L~ls~~~~l~~--~p~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~-----lp~~~~  185 (228)
                      +|++||++++ .+..  +.+.+..+++++.|+|++|.++     .++..+..+++|+.|+|++|. ++.     +...+.
T Consensus         3 ~l~~ld~~~~-~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCC-cCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHh
Confidence            3555555554 3322  1333444555555555555543     233344555556666665542 221     111111


Q ss_pred             -CCCCCCEEeccCCCCCcc-----cchhhhcCccccceeccccCC
Q 038390          186 -ALKFPSTLNFSGLLKFRL-----FPEIMGCIEHLLALRLLGTAI  224 (228)
Q Consensus       186 -~l~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~l~~n~l  224 (228)
                       ...+|++|++++|. ++.     ++..+..+++|++|++++|.+
T Consensus        81 ~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             STTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             cCCCCCCEEECCCCC-ccccccccccchhhccccccccccccccc
Confidence             12345566665542 322     334445555566666655554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=5.3e-07  Score=64.62  Aligned_cols=59  Identities=19%  Similarity=0.063  Sum_probs=25.1

Q ss_pred             cCCCCcceEEccCCcccccc---hhcCCCCCCcEEeccCCCCCCccCc-ccCCCCCCCEEeccC
Q 038390          138 GNMKFLRQLLLDGTDIKGLL---LSIVLLSGIVQLNLKGCKNIECLPN-FISALKFPSTLNFSG  197 (228)
Q Consensus       138 ~~l~~L~~L~l~~~~i~~lp---~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~  197 (228)
                      ..+++|++|++++|+++.++   ..+..+++|+.|++++| .++++++ ......+|+.|++++
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~  124 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDG  124 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTT
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCC
Confidence            34444555555555444332   22334455555555543 2333332 111223445555555

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.25  E-value=5.3e-07  Score=72.25  Aligned_cols=111  Identities=16%  Similarity=0.194  Sum_probs=80.8

Q ss_pred             ccccCCccEEEccCCCCCcc------cchhhcCCCCcceEEccCCccc-----ccchhcCCCCCCcEEeccCCCCCCc--
Q 038390          113 LIFMKSPKTLILSGCSKLKK------FPEIVGNMKFLRQLLLDGTDIK-----GLLLSIVLLSGIVQLNLKGCKNIEC--  179 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~~------~p~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~--  179 (228)
                      +...++|+.|++++|. +..      +...+..+++|+.|++++|.++     .+...+..+++|++|++++|. ++.  
T Consensus       182 l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g  259 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARG  259 (344)
T ss_dssp             HHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHH
T ss_pred             hhhhhhhccccccccc-ccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc-cCchh
Confidence            5667889999999984 432      3345677889999999999875     355667888999999999985 332  


Q ss_pred             ---cCcccC--CCCCCCEEeccCCCCCcc-----cchhhh-cCccccceeccccCCCC
Q 038390          180 ---LPNFIS--ALKFPSTLNFSGLLKFRL-----FPEIMG-CIEHLLALRLLGTAIRG  226 (228)
Q Consensus       180 ---lp~~~~--~l~~L~~L~l~~c~~l~~-----lp~~~~-~l~~L~~L~l~~n~l~~  226 (228)
                         +-..+.  ..++|++|++++| .++.     +...+. +++.|+.|++++|.+.+
T Consensus       260 ~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         260 AAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence               222232  2367999999995 4543     444453 67889999999999864

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=5.9e-08  Score=69.82  Aligned_cols=102  Identities=19%  Similarity=0.084  Sum_probs=67.2

Q ss_pred             ccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccC---cccCCCCCCCEEec
Q 038390          119 PKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLP---NFISALKFPSTLNF  195 (228)
Q Consensus       119 L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp---~~~~~l~~L~~L~l  195 (228)
                      .+.|+++++...   + .+..+..+..++...+....++.....+++|++|++++|+ ++.++   ..+..+++|+.|++
T Consensus        24 ~~~Ldls~l~~~---~-~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~L   98 (162)
T d1koha1          24 QQALDLKGLRSD---P-DLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNL   98 (162)
T ss_dssp             SCCBCCCCCSSC---T-TTTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCC
T ss_pred             hCeeecccCCCC---c-hhhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCcc-ccCCchhHHHHhhCCccccccc
Confidence            344556544322   2 1333344444444444444444445678999999999975 55553   44668999999999


Q ss_pred             cCCCCCcccch-hhhcCccccceeccccCCCC
Q 038390          196 SGLLKFRLFPE-IMGCIEHLLALRLLGTAIRG  226 (228)
Q Consensus       196 ~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~  226 (228)
                      ++ |.++.+++ .......|+.|++++|.+..
T Consensus        99 s~-N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          99 SG-NELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             TT-SCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             cc-CccccchhhhhhhccccceeecCCCCcCc
Confidence            99 78888876 23344579999999999864

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.02  E-value=4.5e-06  Score=59.88  Aligned_cols=108  Identities=16%  Similarity=0.070  Sum_probs=72.9

Q ss_pred             ccCCccEEEccCCCCCcc-----cchhhcCCCCcceEEccCCccc-----ccchhcCCCCCCcEEeccCCCCCCc-----
Q 038390          115 FMKSPKTLILSGCSKLKK-----FPEIVGNMKFLRQLLLDGTDIK-----GLLLSIVLLSGIVQLNLKGCKNIEC-----  179 (228)
Q Consensus       115 ~l~~L~~L~ls~~~~l~~-----~p~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~-----  179 (228)
                      +.++|++|+|+++..++.     +-..+...+.|++|++++|.+.     .+...+...+.|+.|++++|. ++.     
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh-cchHHHHH
Confidence            457789999987644432     3345667788999999998775     234455666789999999875 332     


Q ss_pred             cCcccCCCCCCCEEeccCCC--CCc-----ccchhhhcCccccceeccccC
Q 038390          180 LPNFISALKFPSTLNFSGLL--KFR-----LFPEIMGCIEHLLALRLLGTA  223 (228)
Q Consensus       180 lp~~~~~l~~L~~L~l~~c~--~l~-----~lp~~~~~l~~L~~L~l~~n~  223 (228)
                      +-..+..-++|++|+++++.  .++     .+.+.+..-++|+.|+++.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            33346667889999998742  221     244556667888888887653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.89  E-value=4.9e-06  Score=66.40  Aligned_cols=111  Identities=14%  Similarity=0.129  Sum_probs=77.9

Q ss_pred             cccCCccEEEccCCCCC----cccchhhcCCCCcceEEccCCcccc------cchhcCCCCCCcEEeccCCCCC----Cc
Q 038390          114 IFMKSPKTLILSGCSKL----KKFPEIVGNMKFLRQLLLDGTDIKG------LLLSIVLLSGIVQLNLKGCKNI----EC  179 (228)
Q Consensus       114 ~~l~~L~~L~ls~~~~l----~~~p~~~~~l~~L~~L~l~~~~i~~------lp~~~~~l~~L~~L~l~~~~~~----~~  179 (228)
                      ...+.|+.|++++|..-    ..+...+...+.|+.|++++|.+..      +...+...++|+.|++++|...    ..
T Consensus       155 ~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~  234 (344)
T d2ca6a1         155 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA  234 (344)
T ss_dssp             HTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH
T ss_pred             ccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccc
Confidence            34567888888887322    2344556678899999999998763      3345677889999999987531    12


Q ss_pred             cCcccCCCCCCCEEeccCCCCCcc-----cchhhhc--CccccceeccccCCC
Q 038390          180 LPNFISALKFPSTLNFSGLLKFRL-----FPEIMGC--IEHLLALRLLGTAIR  225 (228)
Q Consensus       180 lp~~~~~l~~L~~L~l~~c~~l~~-----lp~~~~~--l~~L~~L~l~~n~l~  225 (228)
                      +...+..+++|++|++++|. ++.     +-+.+..  .+.|++|++++|.|+
T Consensus       235 L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         235 LAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             ccccccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            44556788999999999965 442     3333433  357999999999875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=5.4e-06  Score=67.81  Aligned_cols=85  Identities=20%  Similarity=0.307  Sum_probs=63.7

Q ss_pred             ccccCCccEEEccCCCCCc-----ccchhhcCCCCcceEEccCCcccc-----cchhcCC-CCCCcEEeccCCCCCCc--
Q 038390          113 LIFMKSPKTLILSGCSKLK-----KFPEIVGNMKFLRQLLLDGTDIKG-----LLLSIVL-LSGIVQLNLKGCKNIEC--  179 (228)
Q Consensus       113 ~~~l~~L~~L~ls~~~~l~-----~~p~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~-l~~L~~L~l~~~~~~~~--  179 (228)
                      +..++++++|+|++|. +.     .++..+..+++|++|+|++|.++.     +...+.. ..+|+.|++++|. ++.  
T Consensus        23 ~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~~  100 (460)
T d1z7xw1          23 LPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAG  100 (460)
T ss_dssp             HHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGG
T ss_pred             HHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCC-ccccc
Confidence            5678899999999994 43     456667889999999999998853     3333332 3579999999985 443  


Q ss_pred             ---cCcccCCCCCCCEEeccCCC
Q 038390          180 ---LPNFISALKFPSTLNFSGLL  199 (228)
Q Consensus       180 ---lp~~~~~l~~L~~L~l~~c~  199 (228)
                         ++..+..+++|++|++++|.
T Consensus       101 ~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1         101 CGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHHHHTTSCTTCCEEECCSSB
T ss_pred             cccccchhhcccccccccccccc
Confidence               45567788999999999853

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.72  E-value=2.3e-05  Score=55.86  Aligned_cols=110  Identities=11%  Similarity=0.046  Sum_probs=74.6

Q ss_pred             cccCCccEEEccCCCCCcc-----cchhhcCCCCcceEEccCCccc-----ccchhcCCCCCCcEEeccCCCCCC----c
Q 038390          114 IFMKSPKTLILSGCSKLKK-----FPEIVGNMKFLRQLLLDGTDIK-----GLLLSIVLLSGIVQLNLKGCKNIE----C  179 (228)
Q Consensus       114 ~~l~~L~~L~ls~~~~l~~-----~p~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~----~  179 (228)
                      .+.++|++|+++++..++.     +-..+...++|++|++++|.++     .+-..+...++++.+++++|..-.    .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3557888999987544422     3345567888999999999775     234456667889999998865322    1


Q ss_pred             cCcccCCCCCCCEEeccCC-CCCc-----ccchhhhcCccccceeccccC
Q 038390          180 LPNFISALKFPSTLNFSGL-LKFR-----LFPEIMGCIEHLLALRLLGTA  223 (228)
Q Consensus       180 lp~~~~~l~~L~~L~l~~c-~~l~-----~lp~~~~~l~~L~~L~l~~n~  223 (228)
                      +...+...++|+.++|+.| +.++     .+.+.+...++|+.|+++.+.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            3345667788888777643 3443     255567778899999987764

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=7.4e-06  Score=57.63  Aligned_cols=39  Identities=33%  Similarity=0.363  Sum_probs=35.7

Q ss_pred             CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHH
Q 038390            1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKI   39 (228)
Q Consensus         1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i   39 (228)
                      |+.+..++.+||+.||..|+|+|++|..|.||..|+...
T Consensus        47 G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~~E~~~a   85 (149)
T d1fyxa_          47 GKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKYELDFS   85 (149)
T ss_dssp             SSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCS
T ss_pred             cchHHHHHHHHHHhCCEEEEEEcCccccccchHHHHHHH
Confidence            788889999999999999999999999999998887543

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=1.2e-05  Score=57.36  Aligned_cols=42  Identities=33%  Similarity=0.351  Sum_probs=38.8

Q ss_pred             CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHHh
Q 038390            1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEW   42 (228)
Q Consensus         1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c   42 (228)
                      |+.+..++.+||+.||..|+|+|++|..|.||..|+...++.
T Consensus        52 G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~~E~~~a~~~   93 (161)
T d1fyva_          52 GKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYELYFAHHN   93 (161)
T ss_dssp             TSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHHHHHHTTSCC
T ss_pred             ccccHHHHHHHHHhCCEEEEEecCccccChHHHHHHHHHHHH
Confidence            788889999999999999999999999999999999887753

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.03  E-value=0.00031  Score=49.87  Aligned_cols=89  Identities=9%  Similarity=0.026  Sum_probs=63.7

Q ss_pred             hcCCCCcceEEccCC-ccc-----ccchhcCCCCCCcEEeccCCCCCC----ccCcccCCCCCCCEEeccCCCCCcc---
Q 038390          137 VGNMKFLRQLLLDGT-DIK-----GLLLSIVLLSGIVQLNLKGCKNIE----CLPNFISALKFPSTLNFSGLLKFRL---  203 (228)
Q Consensus       137 ~~~l~~L~~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~c~~l~~---  203 (228)
                      ..+.+.|++|+|+++ .++     .+-..+...++|+.|++++|..-.    .+...+...++|++|++++| .++.   
T Consensus        11 ~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~   89 (167)
T d1pgva_          11 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELL   89 (167)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred             HhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh-hcchHHH
Confidence            345688999999974 454     244567778899999999975321    12234456689999999996 4542   


Q ss_pred             --cchhhhcCccccceeccccCCCC
Q 038390          204 --FPEIMGCIEHLLALRLLGTAIRG  226 (228)
Q Consensus       204 --lp~~~~~l~~L~~L~l~~n~l~~  226 (228)
                        +-..+...++|++|++++|.+..
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCC
T ss_pred             HHHHHHHHhCCcCCEEECCCCcCCC
Confidence              33456777899999999987654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.66  E-value=0.0036  Score=43.87  Aligned_cols=91  Identities=14%  Similarity=0.159  Sum_probs=62.4

Q ss_pred             chhhcCCCCcceEEccC-Cccc-----ccchhcCCCCCCcEEeccCCCCCCc-----cCcccCCCCCCCEEeccCCCCCc
Q 038390          134 PEIVGNMKFLRQLLLDG-TDIK-----GLLLSIVLLSGIVQLNLKGCKNIEC-----LPNFISALKFPSTLNFSGLLKFR  202 (228)
Q Consensus       134 p~~~~~l~~L~~L~l~~-~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~c~~l~  202 (228)
                      .....+.+.|++|++++ +.++     .+-..+...++|+.|++++|. ++.     +-..+...++++.+++++|..-.
T Consensus        10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_          10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISG   88 (166)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence            34445678999999998 4554     345566788999999999974 332     22345567899999999854322


Q ss_pred             ----ccchhhhcCccccceec--cccCCC
Q 038390          203 ----LFPEIMGCIEHLLALRL--LGTAIR  225 (228)
Q Consensus       203 ----~lp~~~~~l~~L~~L~l--~~n~l~  225 (228)
                          .+-+.+...++|+.++|  ++|.+.
T Consensus        89 ~g~~~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          89 SGILALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             hhHHHHHHHHHhCccccEEeeccCCCcCc
Confidence                34466777888987555  455553