Citrus Sinensis ID: 038397
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1102 | 2.2.26 [Sep-21-2011] | |||||||
| A3KN83 | 1393 | Protein strawberry notch | yes | no | 0.811 | 0.641 | 0.432 | 0.0 | |
| Q5F371 | 1239 | Protein strawberry notch | yes | no | 0.808 | 0.719 | 0.428 | 0.0 | |
| Q689Z5 | 1390 | Protein strawberry notch | yes | no | 0.810 | 0.642 | 0.432 | 0.0 | |
| Q5BJL5 | 1269 | Protein strawberry notch | no | no | 0.767 | 0.666 | 0.438 | 0.0 | |
| A0JND4 | 1374 | Protein strawberry notch | yes | no | 0.765 | 0.614 | 0.443 | 0.0 | |
| A8JUV0 | 1833 | Protein strawberry notch | no | no | 0.435 | 0.261 | 0.493 | 1e-140 | |
| Q7TNB8 | 1349 | Protein strawberry notch | no | no | 0.374 | 0.306 | 0.508 | 1e-122 | |
| Q9Y2G9 | 1366 | Protein strawberry notch | no | no | 0.372 | 0.300 | 0.518 | 1e-120 | |
| Q80Y84 | 1544 | Lysine-specific demethyla | no | no | 0.094 | 0.067 | 0.280 | 5e-06 | |
| Q9UGL1 | 1544 | Lysine-specific demethyla | no | no | 0.093 | 0.066 | 0.259 | 6e-05 |
| >sp|A3KN83|SBNO1_HUMAN Protein strawberry notch homolog 1 OS=Homo sapiens GN=SBNO1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/971 (43%), Positives = 591/971 (60%), Gaps = 77/971 (7%)
Query: 166 GETFTDYRPPKLSIGPAHPDPIVETSSLSAVHPPEPTYDLLIKYDLESSKSLSCLQIETL 225
ET+ +Y P KL IG HPD +VETSSLS+V PP+ Y I + + LS LQ+E +
Sbjct: 239 AETYAEYMPIKLKIGLRHPDAVVETSSLSSVTPPDVWYKTSISEETIDNGWLSALQLEAI 298
Query: 226 VYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFD 285
YA+Q+H LPN RAGF IGDGAGVGKGRTIAG+I+EN+ R++ALW SV +DLK+D
Sbjct: 299 TYAAQQHETFLPNGDRAGFLIGDGAGVGKGRTIAGIIYENYLLSRKRALWFSVSNDLKYD 358
Query: 286 ARRDLDDVGATCIEVHALNKLPYSKLDSRSVG-IREGVVFLTYSSLIASSEKG---RSRL 341
A RDL D+GA I VH+LNK Y K+ S+ G +++GV+F TYSSLI S+ G ++RL
Sbjct: 359 AERDLRDIGAKNILVHSLNKFKYGKISSKHNGSVKKGVIFATYSSLIGESQSGGKYKTRL 418
Query: 342 QQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQPTRTGEAVLELQARLPEARVVYCSATG 401
+QL+ WCG +DG+++FDECHKAKNL P S+PT+TG AVLELQ +LP+ARVVY SATG
Sbjct: 419 KQLLHWCGDDFDGVIVFDECHKAKNLCPVGSSKPTKTGLAVLELQNKLPKARVVYASATG 478
Query: 402 ASEPRNMGYMVRLGLWGAGTCFKDFQIFLGALDKGGVGALELVAMDMKARGMYVCRTLSY 461
ASEPRNM YM RLG+WG GT F++F F+ A+++ GVGA+E+VAMDMK RGMY+ R LS+
Sbjct: 479 ASEPRNMAYMNRLGIWGEGTPFREFSDFIQAVERRGVGAMEIVAMDMKLRGMYIARQLSF 538
Query: 462 KGAEFEVIEAPLEAEMTDMYKKAAEFWAELRVELLSASAFLANDKPNSSQLWRLYWSGHQ 521
G F++ E L MY KA + W R A+ + ++ +W +WS HQ
Sbjct: 539 TGVTFKIEEVLLSQSYVKMYNKAVKLWVIARERFQQAADLIDAEQRMKKSMWGQFWSAHQ 598
Query: 522 RFFRHMCMSAKVPATVRLAKKALAEGKCVVIGLQSTGEARTEEAVTKYGLELDDFISGPR 581
RFF+++C+++KV V+LA++ + GKCVVIGLQSTGEART EA+ + G EL+DF+S +
Sbjct: 599 RFFKYLCIASKVKRVVQLAREEIKNGKCVVIGLQSTGEARTLEALEEGGGELNDFVSTAK 658
Query: 582 ELLLKFVEENYPLPEK-------------------PEPLP----------GEESVKELQR 612
+L +E+++P P++ P P GEE +E ++
Sbjct: 659 GVLQSLIEKHFPAPDRKKLYSLLGIDLTAPSNNSSPRDSPCKENKIKKRKGEEITREAKK 718
Query: 613 KRHSASPGVSFKGRVRKAAKWKPASDGESDEESETDSAHESTESDDEFQ-ICEICNSEEE 671
R G++ ++ + + ESD ES S + S+ DD+F + N ++E
Sbjct: 719 ARKVG--GLTGSSSDDSGSESDASDNEESDYES---SKNMSSGDDDDFNPFLDESNEDDE 773
Query: 672 RKKLL-------------QCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKEKTEEYLQSR 718
L + S + S L + PS S +
Sbjct: 774 NDPWLIRKDHKKNKEKKKKKSIDPDSIQSALLASGLGSKRPSFSSTPVISPAPNSTPANS 833
Query: 719 HAYLTELLKRYEAALER----KSKILDIIRSM--DFPNNPLDDIVDQLGGPDKVAEMTGR 772
+ L + A+ER K +LD + + D P N LD+++D+LGGP+ VAEMTGR
Sbjct: 834 NTNSNSSLITSQDAVERAQQMKKDLLDKLEKLAEDLPPNTLDELIDELGGPENVAEMTGR 893
Query: 773 RGMLVRASSGKGVTYQARNTKEVTMEMVNMHEKQLFMDGKKLVAIISEAGSAGVSLQADR 832
+G +V G ++Y++R+ +V +E++N+ EKQ FMDG K +AIISEA S+G+SLQADR
Sbjct: 894 KGRVVSNDDG-SISYESRSELDVPVEILNITEKQRFMDGDKNIAIISEAASSGISLQADR 952
Query: 833 RAANQKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYRIIFTNLGGERRFASIVAKR 892
RA NQ+RRVH+TLELPWSADRAIQQFGRTHRSNQ +APEY + + L GE+RFASIVAKR
Sbjct: 953 RAKNQRRRVHMTLELPWSADRAIQQFGRTHRSNQVTAPEYVFLISELAGEQRFASIVAKR 1012
Query: 893 LESLGALTQGDRRAGLS--LSAYNYDSAFGKKALMMMYRGIMEQDVLPVVPPGCSSEKPE 950
LESLGALT GDRRA S LS +N+D+ +G+ AL ++ + I+ D V PP P+
Sbjct: 1013 LESLGALTHGDRRATESRDLSRFNFDNKYGRNALEIVMKSIVNLDSPMVSPP------PD 1066
Query: 951 TIQDFMTKAKAALVSVGIVRDTVLGNGKDYGKLSGRIIDSDMHDVGRFLNRLLGLPPDIQ 1010
+F + L+ VG++ N +D + +D D +++G+FLNR+LG+ Q
Sbjct: 1067 YPGEFFKDVRQGLIGVGLI------NVEDRSGI--LTLDKDYNNIGKFLNRILGMEVHQQ 1118
Query: 1011 NRLFELFISILDLLVQNARIEGNLDSGIVDMKA--NIIELQGTPKTVHVDNMSGASTMLF 1068
N LF+ F L +VQNA+ G D GI+D+ + + K + + L+
Sbjct: 1119 NALFQYFADTLTAVVQNAKKNGRYDMGILDLGSGDEKVRKSDVKKFLTPGYSTSGHVELY 1178
Query: 1069 TFTLDRGITWE 1079
T +++RG++WE
Sbjct: 1179 TISVERGMSWE 1189
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Homo sapiens (taxid: 9606) |
| >sp|Q5F371|SBNO1_CHICK Protein strawberry notch homolog 1 OS=Gallus gallus GN=SBNO1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q689Z5|SBNO1_MOUSE Protein strawberry notch homolog 1 OS=Mus musculus GN=Sbno1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q5BJL5|SBNO1_RAT Protein strawberry notch homolog 1 OS=Rattus norvegicus GN=Sbno1 PE=2 SV=2 | Back alignment and function description |
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| >sp|A0JND4|SBNO2_BOVIN Protein strawberry notch homolog 2 OS=Bos taurus GN=SBNO2 PE=2 SV=1 | Back alignment and function description |
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| >sp|A8JUV0|SBNO_DROME Protein strawberry notch OS=Drosophila melanogaster GN=sno PE=1 SV=1 | Back alignment and function description |
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| >sp|Q7TNB8|SBNO2_MOUSE Protein strawberry notch homolog 2 OS=Mus musculus GN=Sbno2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9Y2G9|SBNO2_HUMAN Protein strawberry notch homolog 2 OS=Homo sapiens GN=SBNO2 PE=2 SV=3 | Back alignment and function description |
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| >sp|Q80Y84|KDM5B_MOUSE Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9UGL1|KDM5B_HUMAN Lysine-specific demethylase 5B OS=Homo sapiens GN=KDM5B PE=1 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1102 | ||||||
| 359494619 | 1242 | PREDICTED: protein strawberry notch-like | 0.938 | 0.832 | 0.851 | 0.0 | |
| 255555580 | 1281 | conserved hypothetical protein [Ricinus | 0.955 | 0.822 | 0.834 | 0.0 | |
| 356554818 | 1252 | PREDICTED: protein strawberry notch-like | 0.947 | 0.833 | 0.838 | 0.0 | |
| 449444306 | 1267 | PREDICTED: protein strawberry notch-like | 0.962 | 0.837 | 0.798 | 0.0 | |
| 297736096 | 1294 | unnamed protein product [Vitis vinifera] | 0.955 | 0.813 | 0.778 | 0.0 | |
| 334184015 | 1295 | RING/FYVE/PHD zinc finger domain-contain | 0.963 | 0.820 | 0.779 | 0.0 | |
| 297842717 | 1299 | EMB1135 [Arabidopsis lyrata subsp. lyrat | 0.960 | 0.815 | 0.765 | 0.0 | |
| 356523531 | 4413 | PREDICTED: uncharacterized protein LOC10 | 0.836 | 0.208 | 0.867 | 0.0 | |
| 3152595 | 1257 | Similar to D. melanogaster sno gene gb|U | 0.929 | 0.814 | 0.740 | 0.0 | |
| 357165846 | 1293 | PREDICTED: protein strawberry notch homo | 0.967 | 0.824 | 0.693 | 0.0 |
| >gi|359494619|ref|XP_003634816.1| PREDICTED: protein strawberry notch-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1884 bits (4879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 905/1063 (85%), Positives = 972/1063 (91%), Gaps = 29/1063 (2%)
Query: 17 QVRCAGCHIILTVGPGLTEFICGTCNLPQMLPPELMPASTGGSVPNNTTSSNTTNSTRPT 76
QVRCAGC +ILTVG GLTEF+C TC LPQMLPPEL+ T
Sbjct: 27 QVRCAGCRMILTVGAGLTEFVCPTCQLPQMLPPELVSR---------------------T 65
Query: 77 HMKAASSHVPALGIDPTKIQLPCANCKAILNVPHGLVRFSCPQCAVELAVDMSKVKQFFP 136
H+ VPA GIDPTKIQLPCA+CKAILNVPHGL RF+CPQC ++LAVD+SK+KQFF
Sbjct: 66 HLPP----VPAHGIDPTKIQLPCAHCKAILNVPHGLSRFACPQCGIDLAVDVSKLKQFF- 120
Query: 137 PPPRPAPPAEEVNEVAIEVEREEDEGGMVGETFTDYRPPKLSIGPAHPDPIVETSSLSAV 196
P PP EEVNEVAIEVEREEDEGGMVGETFTDYRPPKLSIGP HPD +VETSSLSAV
Sbjct: 121 ---PPRPPPEEVNEVAIEVEREEDEGGMVGETFTDYRPPKLSIGPPHPDHVVETSSLSAV 177
Query: 197 HPPEPTYDLLIKYDLESSKSLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGR 256
PPEPTYDL IK DLESS +LSCLQIETLVYA QRHL HL + ARAGFFIGDGAGVGKGR
Sbjct: 178 QPPEPTYDLKIKDDLESSNALSCLQIETLVYACQRHLHHLQSGARAGFFIGDGAGVGKGR 237
Query: 257 TIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLDSRSV 316
TIAGLIWENWHHG RKALWISVGSDLKFDARRDLDDVGAT +EVHALNKLPYSKLDS+SV
Sbjct: 238 TIAGLIWENWHHGMRKALWISVGSDLKFDARRDLDDVGATSVEVHALNKLPYSKLDSKSV 297
Query: 317 GIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQPT 376
G+REGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAG QPT
Sbjct: 298 GVREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGGQPT 357
Query: 377 RTGEAVLELQARLPEARVVYCSATGASEPRNMGYMVRLGLWGAGTCFKDFQIFLGALDKG 436
RTGEAVLELQARLP+ARV+YCSATGASEPRNMGYM+RLGLWGAGTCF +F+ FLGALDKG
Sbjct: 358 RTGEAVLELQARLPDARVIYCSATGASEPRNMGYMIRLGLWGAGTCFSNFREFLGALDKG 417
Query: 437 GVGALELVAMDMKARGMYVCRTLSYKGAEFEVIEAPLEAEMTDMYKKAAEFWAELRVELL 496
GVGALELVAMDMKARGMYVCRTLSYKGAEFE +EAPLE +MT+MYK+AAEFWAELRVELL
Sbjct: 418 GVGALELVAMDMKARGMYVCRTLSYKGAEFETVEAPLEGQMTEMYKRAAEFWAELRVELL 477
Query: 497 SASAFLANDKPNSSQLWRLYWSGHQRFFRHMCMSAKVPATVRLAKKALAEGKCVVIGLQS 556
SASAFL ++KPNSSQ+WR+YW+ HQRFFRHMCMSAKVPA VRL+K+AL E KCVVIGLQS
Sbjct: 478 SASAFLTDEKPNSSQVWRVYWASHQRFFRHMCMSAKVPAAVRLSKQALMENKCVVIGLQS 537
Query: 557 TGEARTEEAVTKYGLELDDFISGPRELLLKFVEENYPLPEKPEPLPGEESVKELQRKRHS 616
TGEARTEEAVTKYGLELDDFISGPRELLLKFVEENYPLPEKPE LPGEESVKELQRKRHS
Sbjct: 538 TGEARTEEAVTKYGLELDDFISGPRELLLKFVEENYPLPEKPESLPGEESVKELQRKRHS 597
Query: 617 ASPGVSFKGRVRKAAKWKPASDGESDEESETDSAHESTESDDEFQICEICNSEEERKKLL 676
A+PGVS KGRVRK AKWKPASDGESDE+ E DS HESTESDDEFQICEICN+EEERKKLL
Sbjct: 598 ATPGVSLKGRVRKVAKWKPASDGESDEDFEPDSEHESTESDDEFQICEICNTEEERKKLL 657
Query: 677 QCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKEKTEEYLQSRHAYLTELLKRYEAALERK 736
QCSCC QLVH CLVPP+ +++ +WSCH CKEKT+EYLQ+RHAY+ ELLKRYEAA+ERK
Sbjct: 658 QCSCCAQLVHPSCLVPPMIELVSEEWSCHLCKEKTDEYLQARHAYVAELLKRYEAAMERK 717
Query: 737 SKILDIIRSMDFPNNPLDDIVDQLGGPDKVAEMTGRRGMLVRASSGKGVTYQARNTKEVT 796
SKIL+IIRS+D PNNPLDDI+DQLGGPD VAEMTGRRGMLVRAS+GKGVTYQARNTKEVT
Sbjct: 718 SKILEIIRSLDLPNNPLDDIIDQLGGPDNVAEMTGRRGMLVRASTGKGVTYQARNTKEVT 777
Query: 797 MEMVNMHEKQLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQ 856
MEMVNM+EKQLFMDGKK VAIISEAGSAGVSLQADRRA NQ+RRVH+TLELPWSADRAIQ
Sbjct: 778 MEMVNMNEKQLFMDGKKFVAIISEAGSAGVSLQADRRAVNQRRRVHLTLELPWSADRAIQ 837
Query: 857 QFGRTHRSNQASAPEYRIIFTNLGGERRFASIVAKRLESLGALTQGDRRAGLSLSAYNYD 916
QFGRTHRSNQASAPEYR++FTNLGGERRFASIVAKRLE+LGALTQGDRRAG SLSAYNYD
Sbjct: 838 QFGRTHRSNQASAPEYRLLFTNLGGERRFASIVAKRLETLGALTQGDRRAGPSLSAYNYD 897
Query: 917 SAFGKKALMMMYRGIMEQDVLPVVPPGCSSEKPETIQDFMTKAKAALVSVGIVRDTVLGN 976
SA+GK+ALM MYRGIMEQD LPVVPPGCSSEKPETIQ+F+ KAKAALVSVGIVRD+VLGN
Sbjct: 898 SAYGKRALMAMYRGIMEQDSLPVVPPGCSSEKPETIQEFIMKAKAALVSVGIVRDSVLGN 957
Query: 977 GKDYGKLSGRIIDSDMHDVGRFLNRLLGLPPDIQNRLFELFISILDLLVQNARIEGNLDS 1036
GKD GKLSGRI+DSDMHDVGRFLNRLLGLPPDIQNRLFELF+SILDLLVQNAR EG+ DS
Sbjct: 958 GKDSGKLSGRIVDSDMHDVGRFLNRLLGLPPDIQNRLFELFVSILDLLVQNARTEGHFDS 1017
Query: 1037 GIVDMKANIIELQGTPKTVHVDNMSGASTMLFTFTLDRGITWE 1079
GIVDMKAN+IELQGTPKTVH+D MSGAST++FTFT+DRGITWE
Sbjct: 1018 GIVDMKANVIELQGTPKTVHIDPMSGASTVMFTFTMDRGITWE 1060
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255555580|ref|XP_002518826.1| conserved hypothetical protein [Ricinus communis] gi|223541999|gb|EEF43544.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356554818|ref|XP_003545739.1| PREDICTED: protein strawberry notch-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449444306|ref|XP_004139916.1| PREDICTED: protein strawberry notch-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297736096|emb|CBI24134.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|334184015|ref|NP_178053.4| RING/FYVE/PHD zinc finger domain-containing protein [Arabidopsis thaliana] gi|332198112|gb|AEE36233.1| RING/FYVE/PHD zinc finger domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297842717|ref|XP_002889240.1| EMB1135 [Arabidopsis lyrata subsp. lyrata] gi|297335081|gb|EFH65499.1| EMB1135 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356523531|ref|XP_003530391.1| PREDICTED: uncharacterized protein LOC100804594 [Glycine max] | Back alignment and taxonomy information |
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| >gi|3152595|gb|AAC17076.1| Similar to D. melanogaster sno gene gb|U95760. EST gb|N97148 and gb|Z26221 come from this gene [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|357165846|ref|XP_003580513.1| PREDICTED: protein strawberry notch homolog 1-like [Brachypodium distachyon] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1102 | ||||||
| UNIPROTKB|F1NSR1 | 1238 | SBNO1 "Protein strawberry notc | 0.373 | 0.332 | 0.540 | 1.5e-199 | |
| UNIPROTKB|Q5F371 | 1239 | SBNO1 "Protein strawberry notc | 0.373 | 0.332 | 0.540 | 1.5e-199 | |
| UNIPROTKB|J9NZM7 | 1377 | SBNO1 "Uncharacterized protein | 0.382 | 0.306 | 0.528 | 4.6e-198 | |
| UNIPROTKB|A3KN83 | 1393 | SBNO1 "Protein strawberry notc | 0.382 | 0.302 | 0.528 | 4.6e-198 | |
| FB|FBgn0005410 | 1833 | sno "strawberry notch" [Drosop | 0.388 | 0.233 | 0.534 | 5.7e-198 | |
| UNIPROTKB|E1BMP8 | 1395 | SBNO1 "Uncharacterized protein | 0.373 | 0.295 | 0.538 | 9.6e-198 | |
| RGD|1310005 | 1269 | Sbno1 "strawberry notch homolo | 0.382 | 0.332 | 0.528 | 1.2e-197 | |
| UNIPROTKB|Q5BJL5 | 1269 | Sbno1 "Protein strawberry notc | 0.382 | 0.332 | 0.528 | 1.2e-197 | |
| MGI|MGI:2384298 | 1390 | Sbno1 "sno, strawberry notch h | 0.382 | 0.303 | 0.528 | 1.6e-197 | |
| UNIPROTKB|J9NVJ1 | 1057 | SBNO1 "Uncharacterized protein | 0.382 | 0.399 | 0.528 | 2e-197 |
| UNIPROTKB|F1NSR1 SBNO1 "Protein strawberry notch homolog 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1193 (425.0 bits), Expect = 1.5e-199, Sum P(2) = 1.5e-199
Identities = 225/416 (54%), Positives = 300/416 (72%)
Query: 167 ETFTDYRPPKLSIGPAHPDPIVETSSLSAVHPPEPTYDLLIKYDLESSKSLSCLQIETLV 226
ET+ +Y P KL IG HPDP+VETSSLS+V PP+ Y I + + LS LQ+E +
Sbjct: 237 ETYAEYMPIKLKIGLRHPDPVVETSSLSSVTPPDVWYQTSISEETIDNGWLSALQLEAIT 296
Query: 227 YASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDA 286
YA+Q+H LPN RAGF IGDGAGVGKGRTIAG+I+EN+ GR++A+W SV +DLK+DA
Sbjct: 297 YAAQQHETFLPNGDRAGFLIGDGAGVGKGRTIAGIIYENYLLGRKRAVWFSVSNDLKYDA 356
Query: 287 RRDLDDVGATCIEVHALNKLPYSKLDSRSVG-IREGVVFLTYSSLIASSEKG---RSRLQ 342
RDL D+GA I VH+LNK Y K+ S+ G +++GV+F TYSSLI S+ G ++RL+
Sbjct: 357 ERDLRDIGAKNILVHSLNKFKYGKISSKHNGSVKKGVIFATYSSLIGESQSGGKYKTRLK 416
Query: 343 QLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQPTRTGEAVLELQARLPEARVVYCSATGA 402
QL+ WCG +DG+++FDECHKAKNL P S+PT+TG AVLELQ +LP+ARVVY SATGA
Sbjct: 417 QLLHWCGEDFDGVIVFDECHKAKNLCPVGSSKPTKTGLAVLELQNKLPKARVVYASATGA 476
Query: 403 SEPRNMGYMVRLGLWGAGTCFKDFQIFLGALDKGGVGALELVAMDMKARGMYVCRTLSYK 462
SEPRNM YM RLG+WG GT F++F F+ A+++ GVGA+E+VAMDMK RGMY+ R LS+
Sbjct: 477 SEPRNMAYMNRLGIWGEGTPFREFSDFIQAVERRGVGAMEIVAMDMKLRGMYIARQLSFS 536
Query: 463 GAEFEVIEAPLEAEMTDMYKKAAEFWAELRVELLSASAFLANDKPNSSQLWRLYWSGHQR 522
G F++ E L E MY K+ + W R A+ + ++ +W +WS HQR
Sbjct: 537 GVTFKIDEVLLSQEYVKMYNKSVKLWVSARERFQQAADLIDAEQRMKKSMWGQFWSAHQR 596
Query: 523 FFRHMCMSAKVPATVRLAKKALAEGKCVVIGLQSTGEARTEEAVTKYGLELDDFIS 578
FF+++C+++KV V+LA++ + GKCVVIGLQSTGEART EA+ + G EL+DF+S
Sbjct: 597 FFKYLCIASKVKRVVQLAREEIKNGKCVVIGLQSTGEARTLEALEEGGGELNDFVS 652
|
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| UNIPROTKB|Q5F371 SBNO1 "Protein strawberry notch homolog 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9NZM7 SBNO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A3KN83 SBNO1 "Protein strawberry notch homolog 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| FB|FBgn0005410 sno "strawberry notch" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BMP8 SBNO1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| RGD|1310005 Sbno1 "strawberry notch homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5BJL5 Sbno1 "Protein strawberry notch homolog 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:2384298 Sbno1 "sno, strawberry notch homolog 1 (Drosophila)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9NVJ1 SBNO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1102 | |||
| pfam13872 | 303 | pfam13872, AAA_34, P-loop containing NTP hydrolase | 1e-163 | |
| pfam13871 | 263 | pfam13871, Helicase_C_4, Helicase_C-like | 1e-124 | |
| pfam00628 | 51 | pfam00628, PHD, PHD-finger | 4e-09 | |
| smart00249 | 47 | smart00249, PHD, PHD zinc finger | 6e-09 |
| >gnl|CDD|222428 pfam13872, AAA_34, P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Score = 482 bits (1243), Expect = e-163
Identities = 152/308 (49%), Positives = 204/308 (66%), Gaps = 8/308 (2%)
Query: 180 GPAHPDPIVETSSLSAVHPPEPTYDLLIKYDLESSKSLSCLQIETLVYASQRHLQHLPNS 239
HPDP+VE++++++V PP+PTY + L LS Q+ET++YA Q H LP
Sbjct: 1 AKPHPDPLVESAAMASVAPPDPTYRPRLPAALVDDGLLSDAQLETVIYAGQAHEGDLPGG 60
Query: 240 ARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGATCIE 299
RAGFF+GDG GVGKGR IAG+I +NW GRR+ALWIS DL DA RDL D+G I+
Sbjct: 61 FRAGFFLGDGTGVGKGRQIAGIILDNWLQGRRRALWISKSDDLLEDAERDLRDLGGERID 120
Query: 300 VHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSE---KGRSRLQQLVQWCGSGYDGLV 356
+ L++ K ++EG++F TY++L + S+ K RSRL Q+V W G +DG++
Sbjct: 121 IVPLSRFKQGKPIR----LKEGILFTTYATLRSESQAGGKKRSRLDQIVDWLGEDFDGVI 176
Query: 357 IFDECHKAKNLVPEAGSQPTRTGEAVLELQARLPEARVVYCSATGASEPRNMGYMVRLGL 416
+FDECHKAKN +P++ G A L LQ LP ARVVY SATGA+EPRN+ YM RLGL
Sbjct: 177 VFDECHKAKNAAGG-EKKPSQQGLAGLRLQNALPNARVVYVSATGATEPRNLAYMTRLGL 235
Query: 417 WGAGTCFKDFQIFLGALDKGGVGALELVAMDMKARGMYVCRTLSYKGAEFEVIEAPLEAE 476
WG GT F + F+ A++KGGV A+ELVA D+KA G+Y+ R+LS+ G EFE++E PL E
Sbjct: 236 WGPGTPFATREDFVSAMEKGGVAAMELVARDLKALGLYLARSLSFAGVEFEILEHPLTEE 295
Query: 477 MTDMYKKA 484
+Y
Sbjct: 296 QIAIYDAY 303
|
Length = 303 |
| >gnl|CDD|222427 pfam13871, Helicase_C_4, Helicase_C-like | Back alignment and domain information |
|---|
| >gnl|CDD|201356 pfam00628, PHD, PHD-finger | Back alignment and domain information |
|---|
| >gnl|CDD|214584 smart00249, PHD, PHD zinc finger | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1102 | |||
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 100.0 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 100.0 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 100.0 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.37 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.3 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 99.17 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.12 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 98.95 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 98.59 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 98.54 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 98.47 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 98.44 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 98.18 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 97.85 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 97.85 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 97.75 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 97.53 | |
| KOG1244 | 336 | consensus Predicted transcription factor Requiem/N | 97.52 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 97.48 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 97.45 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 97.44 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 97.4 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 97.28 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 97.19 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 97.14 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 97.06 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 97.02 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 96.97 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 96.93 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 96.93 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 96.92 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 96.84 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 96.83 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 96.82 | |
| PTZ00424 | 401 | helicase 45; Provisional | 96.76 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 96.6 | |
| PRK00398 | 46 | rpoP DNA-directed RNA polymerase subunit P; Provis | 96.58 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 96.53 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 96.44 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 96.36 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 96.36 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 96.34 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 96.3 | |
| PRK00398 | 46 | rpoP DNA-directed RNA polymerase subunit P; Provis | 96.24 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 96.15 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 96.13 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 96.12 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 96.06 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 96.0 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 95.99 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 95.95 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 95.91 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 95.87 | |
| PTZ00110 | 545 | helicase; Provisional | 95.87 | |
| PRK14714 | 1337 | DNA polymerase II large subunit; Provisional | 95.86 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 95.76 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 95.74 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 95.57 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 95.52 | |
| TIGR01053 | 31 | LSD1 zinc finger domain, LSD1 subclass. This model | 95.38 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 95.34 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 95.06 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 94.97 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 94.93 | |
| TIGR01053 | 31 | LSD1 zinc finger domain, LSD1 subclass. This model | 94.92 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 94.88 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 94.86 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 94.79 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 94.71 | |
| PTZ00110 | 545 | helicase; Provisional | 94.59 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 94.55 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 94.44 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 94.17 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 94.15 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 93.98 | |
| KOG4299 | 613 | consensus PHD Zn-finger protein [General function | 93.89 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 93.52 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 93.37 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 93.33 | |
| PRK14559 | 645 | putative protein serine/threonine phosphatase; Pro | 93.19 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 92.95 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 92.88 | |
| PF09788 | 256 | Tmemb_55A: Transmembrane protein 55A; InterPro: IP | 92.85 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 92.85 | |
| cd04718 | 148 | BAH_plant_2 BAH, or Bromo Adjacent Homology domain | 92.67 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 92.62 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 92.28 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 91.88 | |
| PRK04023 | 1121 | DNA polymerase II large subunit; Validated | 91.66 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 91.65 | |
| TIGR02098 | 38 | MJ0042_CXXC MJ0042 family finger-like domain. This | 91.65 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 91.55 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 91.55 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 91.22 | |
| COG2888 | 61 | Predicted Zn-ribbon RNA-binding protein with a fun | 91.09 | |
| PF07754 | 24 | DUF1610: Domain of unknown function (DUF1610); Int | 91.08 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 91.04 | |
| PF04810 | 40 | zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: | 90.9 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 90.73 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 90.73 | |
| PTZ00424 | 401 | helicase 45; Provisional | 90.61 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 90.44 | |
| COG1996 | 49 | RPC10 DNA-directed RNA polymerase, subunit RPC10 ( | 90.19 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 90.07 | |
| PF06943 | 25 | zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zin | 89.74 | |
| KOG0957 | 707 | consensus PHD finger protein [General function pre | 89.64 | |
| PF07754 | 24 | DUF1610: Domain of unknown function (DUF1610); Int | 89.46 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 89.03 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 88.91 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 88.87 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 88.75 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 88.65 | |
| PF10122 | 51 | Mu-like_Com: Mu-like prophage protein Com; InterPr | 88.17 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 88.07 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 88.06 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 88.03 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 87.82 | |
| COG2888 | 61 | Predicted Zn-ribbon RNA-binding protein with a fun | 87.82 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 87.61 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 87.23 | |
| COG1996 | 49 | RPC10 DNA-directed RNA polymerase, subunit RPC10 ( | 87.23 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 87.03 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 86.75 | |
| TIGR01384 | 104 | TFS_arch transcription factor S, archaeal. There h | 86.66 | |
| smart00659 | 44 | RPOLCX RNA polymerase subunit CX. present in RNA p | 86.65 | |
| PF13719 | 37 | zinc_ribbon_5: zinc-ribbon domain | 86.47 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 86.36 | |
| PF11023 | 114 | DUF2614: Protein of unknown function (DUF2614); In | 86.36 | |
| PRK00415 | 59 | rps27e 30S ribosomal protein S27e; Reviewed | 86.34 | |
| PF13240 | 23 | zinc_ribbon_2: zinc-ribbon domain | 86.26 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 86.25 | |
| PRK14890 | 59 | putative Zn-ribbon RNA-binding protein; Provisiona | 86.23 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 86.09 | |
| TIGR02098 | 38 | MJ0042_CXXC MJ0042 family finger-like domain. This | 86.05 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 85.88 | |
| TIGR01206 | 54 | lysW lysine biosynthesis protein LysW. This very s | 85.5 | |
| smart00661 | 52 | RPOL9 RNA polymerase subunit 9. | 85.24 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 85.01 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 84.93 | |
| PF13248 | 26 | zf-ribbon_3: zinc-ribbon domain | 84.58 | |
| PRK13700 | 732 | conjugal transfer protein TraD; Provisional | 84.41 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 84.19 | |
| PF13717 | 36 | zinc_ribbon_4: zinc-ribbon domain | 84.05 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 83.95 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 83.86 | |
| smart00834 | 41 | CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C | 83.53 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 83.43 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 82.82 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 82.75 | |
| PF09538 | 108 | FYDLN_acid: Protein of unknown function (FYDLN_aci | 82.7 | |
| PF08271 | 43 | TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013 | 82.68 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 82.57 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 82.43 | |
| PF14353 | 128 | CpXC: CpXC protein | 82.14 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 81.71 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 81.63 | |
| KOG1512 | 381 | consensus PHD Zn-finger protein [General function | 81.51 | |
| PF13240 | 23 | zinc_ribbon_2: zinc-ribbon domain | 81.37 | |
| PF03833 | 900 | PolC_DP2: DNA polymerase II large subunit DP2; Int | 80.9 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 80.83 | |
| PF09297 | 32 | zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do | 80.79 | |
| TIGR01206 | 54 | lysW lysine biosynthesis protein LysW. This very s | 80.78 |
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-292 Score=2472.17 Aligned_cols=892 Identities=48% Similarity=0.793 Sum_probs=771.7
Q ss_pred cccCCccccccccccCCCCcCCCCCCCcccccccCCCCCCCCCCccCcccccccccCCcccchhhHHHHHHhhccccCCC
Q 038397 159 EDEGGMVGETFTDYRPPKLSIGPAHPDPIVETSSLSAVHPPEPTYDLLIKYDLESSKSLSCLQIETLVYASQRHLQHLPN 238 (1102)
Q Consensus 159 ~~~~~~~~~~~~~y~p~~~~~~~~hP~~lve~~~l~sv~pP~~~y~~~lp~~~~~~g~LS~~Qle~v~ya~q~h~~~l~~ 238 (1102)
+.|+.++++||++|+|+|+++|+.|||+|||||+|+||+|||++|.|.||. |++|.||++|||||+||||+|++.||+
T Consensus 209 d~EelG~aeTya~Y~PsKlk~GkaHPD~VVEtatLSSV~ppdi~YqlalP~--i~sg~lSALQLEav~YAcQ~He~llPs 286 (1300)
T KOG1513|consen 209 DYEELGVAETYADYWPSKLKIGKAHPDRVVETATLSSVEPPDITYQLALPS--IDSGHLSALQLEAVTYACQAHEVLLPS 286 (1300)
T ss_pred cHHhhchhhhhhhhchhhhhccccCCccceeeeeccccCCCCceEEEeccc--CcccchhHHHHHHHHHHHhhhhhcCCC
Confidence 445668999999999999999999999999999999999999999999998 899999999999999999999999999
Q ss_pred CCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCCCcccccccCCCCCCcCCCCccc-
Q 038397 239 SARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLDSRSVG- 317 (1102)
Q Consensus 239 g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~~~i~v~~l~~~~~~~~~~~~~~- 317 (1102)
|.|+|||||||+||||||+|||||+||||+||+|++|||||+||+|||+|||+|||+..|.||+||||||++|++++++
T Consensus 287 G~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~DigA~~I~V~alnK~KYakIss~en~n 366 (1300)
T KOG1513|consen 287 GQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRDIGATGIAVHALNKFKYAKISSKENTN 366 (1300)
T ss_pred CccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhhcCCCCccceehhhcccccccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred cccceEEeehhhhhhccc----cccchHHHHHHHhccCCCceEEeecchhccccCCCCCCCchhHHHHHHHHhhhCCCcc
Q 038397 318 IREGVVFLTYSSLIASSE----KGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQPTRTGEAVLELQARLPEAR 393 (1102)
Q Consensus 318 ~~~GvlF~TYs~L~~~~~----~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~~s~~g~avl~LQ~~lP~AR 393 (1102)
.++||||+||+.||++++ |++||+.||++|||+||+|||||||||||||+++.++.+|||||++||+||++||+||
T Consensus 367 ~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~AR 446 (1300)
T KOG1513|consen 367 TKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNAR 446 (1300)
T ss_pred ccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCce
Confidence 899999999999999975 4689999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCccchhhhccccCCCCCCCCHHHHHHHHhccChhHHHHHHHHHHhccceeeeccCCCCceeEEEeccC
Q 038397 394 VVYCSATGASEPRNMGYMVRLGLWGAGTCFKDFQIFLGALDKGGVGALELVAMDMKARGMYVCRTLSYKGAEFEVIEAPL 473 (1102)
Q Consensus 394 vvY~SATgasep~Nl~ym~RLGLWg~gt~f~~~~~f~~a~~~gGv~amE~va~dlK~~G~yiaR~LSf~gvef~i~e~~l 473 (1102)
|||+||||||||+||+||+||||||+||+|++|.+|++|+|++|||||||||||||.+||||||||||+||+|+|+|++|
T Consensus 447 VVYASATGAsEPrNMaYM~RLGlWGegtaf~eF~eFi~AvEkRGvGAMEIVAMDMK~rGmYiARQLSFkgVsFrieEv~l 526 (1300)
T KOG1513|consen 447 VVYASATGASEPRNMAYMVRLGLWGEGTAFPEFEEFIHAVEKRGVGAMEIVAMDMKLRGMYIARQLSFKGVSFRIEEVPL 526 (1300)
T ss_pred EEEeeccCCCCcchhhhhhhhccccCCCcCccHHHHHHHHHhcCCceeeeeehhhhhhhhhhhhhccccCceEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhHHHHHHHHhcCchHHHHHHHHHHHCCCeEEEE
Q 038397 474 EAEMTDMYKKAAEFWAELRVELLSASAFLANDKPNSSQLWRLYWSGHQRFFRHMCMSAKVPATVRLAKKALAEGKCVVIG 553 (1102)
Q Consensus 474 ~~~~~~~Yd~~a~~w~~~~~~~~~a~e~~~~~~~~~~~~~~~FwsahQrFFk~l~~a~Kv~~~V~~a~eal~~Gk~vVIg 553 (1102)
+++|+++||++|+||+++++.|++|+++|+.+.+..|.+|+|||++|||||||||||+||.++|++|+|+++.|||||||
T Consensus 527 s~eF~k~Yn~a~~LW~ea~~kFq~a~e~m~~E~R~~Kt~wgQFWsaHQRFFKyLCIAaKV~~~V~laReaik~~KcVVIG 606 (1300)
T KOG1513|consen 527 SKEFRKVYNRAAELWAEALNKFQQAAELMDLESRTCKTLWGQFWSAHQRFFKYLCIAAKVNHLVELAREAIKRGKCVVIG 606 (1300)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEEe
Confidence 99999999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred EecchhHHHHHHHHhcCCCcCccccChHHHHHHHHHhhCCCCCCCCCCCCchhhHHHhhhcccCCCCCCccccc--cccc
Q 038397 554 LQSTGEARTEEAVTKYGLELDDFISGPRELLLKFVEENYPLPEKPEPLPGEESVKELQRKRHSASPGVSFKGRV--RKAA 631 (1102)
Q Consensus 554 LqSTGEA~~~~~l~~~~~~l~dfvst~r~il~~~v~~~FP~~~~~~~~~~~~~~~~~~r~r~~~~~~~s~kGR~--RK~a 631 (1102)
|||||||+|+|.|++.+|+|++||||+|+||++||+||||++++...- +......|. +.+.+||. .+..
T Consensus 607 LQSTGEsrTle~Le~~~G~Ln~FVStAk~v~~s~iekHFPa~~r~~~~-----~tt~~G~r~----g~~~~~Rs~e~~~~ 677 (1300)
T KOG1513|consen 607 LQSTGESRTLEVLEENDGELNCFVSTAKGVFQSLIEKHFPAPKRKSDR-----VTTGAGSRR----GRRPRGRSNEAKAP 677 (1300)
T ss_pred eccccchhHHHHHHhcCCchhHHHHHHHHHHHHHHHHhCCCccccccc-----ccccccccc----ccCcccCCCccccc
Confidence 999999999999999999999999999999999999999999763211 000000000 01111221 1111
Q ss_pred ccC---cCCCCCCCCCC---cc--ccc----CCCCC-Cccc-------cccccccCcHHHHhhhhhccccCCccccCCCC
Q 038397 632 KWK---PASDGESDEES---ET--DSA----HESTE-SDDE-------FQICEICNSEEERKKLLQCSCCGQLVHSGCLV 691 (1102)
Q Consensus 632 k~~---~~sd~~~DeeS---es--dSd----~~Ssd-SDDE-------f~~ce~cgsed~k~kLL~cs~cgk~~H~~cL~ 691 (1102)
+.. +-.+|++|+++ ++ ++| +|+-+ +||+ +...+.-.++++..+ ..|+.- -.
T Consensus 678 k~~~~tdg~~~~~d~d~~~sd~~~~~d~~sa~ee~~~~~d~~~~~~~~~~~sd~~~~ee~~~e-~lc~~~--------~d 748 (1300)
T KOG1513|consen 678 KLACETDGVIDISDDDSTESDPGLDSDFNSAPEELVGQDDDVVIVDAVALPSDDRGSEEEFNE-FLCLLQ--------RD 748 (1300)
T ss_pred chhcccccccccccccccccCcccccccccchHhhhccccceeccccccCCccchhhhhhhhh-hhhhcc--------cC
Confidence 111 11112222111 00 011 11100 0110 000111111111111 223210 01
Q ss_pred CCcccCCCCCCccccchhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCChHHHHHHhhCCCceeeee
Q 038397 692 PPITDVIPSDWSCHSCKEKTEEYLQSRHAYLTELLKRYEAALERKSKILDIIRSM--DFPNNPLDDIVDQLGGPDKVAEM 769 (1102)
Q Consensus 692 PP~~di~~~dW~c~sCkek~eE~~~~r~~~~~e~~~~~~~a~~~r~~LL~~i~~L--~LP~n~LD~LId~LGGp~~VAEm 769 (1102)
|++.+ ++ -..++ ...+++..... ..++..+||++||++|+.| .||||+||||||+||||+.||||
T Consensus 749 ~~~~~---e~---t~~~d---n~~kkrk~~e~----~~er~~~mkeeLL~kverLg~~LP~NTLDqLIdelGGp~~VAEM 815 (1300)
T KOG1513|consen 749 PHGPG---ED---TLQKD---NKAKKRKRDEE----EAERVERMKEELLDKVERLGRELPPNTLDQLIDELGGPQRVAEM 815 (1300)
T ss_pred CCCCC---cc---hhhhh---hhhhhhcccHH----HHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHhCCchhHHHh
Confidence 12211 00 00010 01111211111 1245667999999999999 89999999999999999999999
Q ss_pred cCCcceEEEcCCCCeEEEEecCCccchhhccchHHHhhhcCCcceEEEEecccccccccccccccccccceeEEEecCCC
Q 038397 770 TGRRGMLVRASSGKGVTYQARNTKEVTMEMVNMHEKQLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPW 849 (1102)
Q Consensus 770 TGRkgRvVr~~dG~~v~ye~R~~~d~~~~~~N~~Ek~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpW 849 (1102)
|||+||||+++||. |.||+|.+.|+++|.+|++|||+||+|+|+|||||||||+|||||+||||.||||||||||||||
T Consensus 816 TGRrGrvV~te~g~-v~ye~R~e~dvsld~vN~~EKqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPW 894 (1300)
T KOG1513|consen 816 TGRRGRVVSTEDGT-VAYESRAEQDVSLDLVNLREKQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPW 894 (1300)
T ss_pred hccCceeEecCCCc-eeeecccccCCChhhcchHHHhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCc
Confidence 99999999999997 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHhHHHHhhcccccCCCCCCCeEEEeecCccchhhhHHHHHHHHhhcCCccccccccCC--CCCcCCcCChHHHHHHHHH
Q 038397 850 SADRAIQQFGRTHRSNQASAPEYRIIFTNLGGERRFASIVAKRLESLGALTQGDRRAGL--SLSAYNYDSAFGKKALMMM 927 (1102)
Q Consensus 850 sADkAIQqfGRTHRSNQvsaP~Y~~l~T~l~GErRFaS~VAkRLeSLGALT~GdRra~~--~ls~fNldn~YGr~AL~~~ 927 (1102)
|||+||||||||||||||++|+|+||||||+|||||||+||||||||||||||||||++ |||+|||||+|||.||+.+
T Consensus 895 SADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErRFAS~VAKRLESLGALThGDRRATetRDLSqfNidNkyGr~ALe~v 974 (1300)
T KOG1513|consen 895 SADRAIQQFGRTHRSNQVSAPEYVFLISELAGERRFASIVAKRLESLGALTHGDRRATETRDLSQFNIDNKYGRRALETV 974 (1300)
T ss_pred chhHHHHHhcccccccccCCCeEEEEehhhccchHHHHHHHHHHHhhccccccccccccccchhhhcccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999975 8999999999999999999
Q ss_pred HHHHhccCccCCCCCCCCCCCcch-HHHHHHHHHHHhhhccceeccccCCCCCCCCCCcc-cccCCcccHHHHHHHHhCC
Q 038397 928 YRGIMEQDVLPVVPPGCSSEKPET-IQDFMTKAKAALVSVGIVRDTVLGNGKDYGKLSGR-IIDSDMHDVGRFLNRLLGL 1005 (1102)
Q Consensus 928 ~~~i~~~~~~p~~p~~~~~~~~~~-~~~f~~~~~~~L~~vGl~~~~~~~~~~~~~~~~g~-~~~~d~~~i~~FLNRlLgl 1005 (1102)
|+.|+++. .|.+|++. +| .++||.||+.+|.+|||+..+ + .+|. ..+||.++|+|||||||||
T Consensus 975 l~ti~~~~-~~~v~~Pq-----~Yk~g~Ff~D~~~~m~gVGi~~r~-----e----~~g~~tveKd~~nIsKFLNRILGl 1039 (1300)
T KOG1513|consen 975 LTTILSQT-EPLVPVPQ-----DYKVGEFFRDMKQAMLGVGIGVRE-----E----RNGVLTVEKDCNNISKFLNRILGL 1039 (1300)
T ss_pred HHHHhccc-CCCCCCCC-----CCcchHHHHHHHHHHhceeeeeec-----c----cCceeEeecchhhHHHHHHHHhCC
Confidence 99999887 68888764 45 569999999999999987541 1 1243 4689999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccceEEEeccceEEE--ecCCCCceEEEEEEEeccccChhhhcc
Q 038397 1006 PPDIQNRLFELFISILDLLVQNARIEGNLDSGIVDMKANIIELQGTPKTVH--VDNMSGASTMLFTFTLDRGITWEGLGF 1083 (1102)
Q Consensus 1006 ~v~~Qn~lF~~F~~~l~~~i~~ak~~G~~d~Gi~dl~~~~~~~~~~~~~~~--~~~~~ga~t~l~~~~~drGmswe~A~~ 1083 (1102)
+|+.||+||+||++++.++|+++|++|+||+||+||+++..+|++....++ .+..+.+.|++|||.||||||||+|++
T Consensus 1040 ~Vh~QNaLFqYFsDtm~~lI~q~Kr~GryDmGILDLgag~e~Vrk~~~~~Fl~~~~tgs~~vElhtIsVERGmsWEeA~~ 1119 (1300)
T KOG1513|consen 1040 EVHKQNALFQYFSDTMTALIQQAKREGRYDMGILDLGAGDEEVRKESLQVFLRPGATGSGQVELHTISVERGMSWEEAFA 1119 (1300)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhhhcCccccceeecccccchhhhhhhheeeccCCCCcceeEEEEEEeccCccHHHHHH
Confidence 999999999999999999999999999999999999998877775443333 445556799999999999999999999
Q ss_pred ccc--------cceeeeeecCCcc
Q 038397 1084 KTS--------MLTSVTIRYQPKV 1099 (1102)
Q Consensus 1084 k~~--------~~~~~~~~~~~~~ 1099 (1102)
||. ||-+.|+|||||+
T Consensus 1120 k~~elt~~~dGFYls~k~RnnKks 1143 (1300)
T KOG1513|consen 1120 KYKELTGPDDGFYLSHKVRNNKKS 1143 (1300)
T ss_pred HHHhhcCCCCceEEeehhhCCCcc
Confidence 997 7788999999997
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
| >KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] | Back alignment and domain information |
|---|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional | Back alignment and domain information |
|---|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
| >PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
| >PRK14714 DNA polymerase II large subunit; Provisional | Back alignment and domain information |
|---|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
| >TIGR01053 LSD1 zinc finger domain, LSD1 subclass | Back alignment and domain information |
|---|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
| >TIGR01053 LSD1 zinc finger domain, LSD1 subclass | Back alignment and domain information |
|---|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG4299 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
| >PRK14559 putative protein serine/threonine phosphatase; Provisional | Back alignment and domain information |
|---|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
| >PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: |
Back alignment and domain information |
|---|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function | Back alignment and domain information |
|---|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
| >PRK04023 DNA polymerase II large subunit; Validated | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
| >TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain | Back alignment and domain information |
|---|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species | Back alignment and domain information |
|---|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
| >COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription] | Back alignment and domain information |
|---|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >PF06943 zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG0957 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species | Back alignment and domain information |
|---|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ] | Back alignment and domain information |
|---|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
| >COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
| >COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription] | Back alignment and domain information |
|---|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >TIGR01384 TFS_arch transcription factor S, archaeal | Back alignment and domain information |
|---|
| >smart00659 RPOLCX RNA polymerase subunit CX | Back alignment and domain information |
|---|
| >PF13719 zinc_ribbon_5: zinc-ribbon domain | Back alignment and domain information |
|---|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
| >PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins | Back alignment and domain information |
|---|
| >PRK00415 rps27e 30S ribosomal protein S27e; Reviewed | Back alignment and domain information |
|---|
| >PF13240 zinc_ribbon_2: zinc-ribbon domain | Back alignment and domain information |
|---|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK14890 putative Zn-ribbon RNA-binding protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain | Back alignment and domain information |
|---|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
| >TIGR01206 lysW lysine biosynthesis protein LysW | Back alignment and domain information |
|---|
| >smart00661 RPOL9 RNA polymerase subunit 9 | Back alignment and domain information |
|---|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF13248 zf-ribbon_3: zinc-ribbon domain | Back alignment and domain information |
|---|
| >PRK13700 conjugal transfer protein TraD; Provisional | Back alignment and domain information |
|---|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
| >PF13717 zinc_ribbon_4: zinc-ribbon domain | Back alignment and domain information |
|---|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >smart00834 CxxC_CXXC_SSSS Putative regulatory protein | Back alignment and domain information |
|---|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues | Back alignment and domain information |
|---|
| >PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
| >PF14353 CpXC: CpXC protein | Back alignment and domain information |
|---|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >KOG1512 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF13240 zinc_ribbon_2: zinc-ribbon domain | Back alignment and domain information |
|---|
| >PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus | Back alignment and domain information |
|---|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains | Back alignment and domain information |
|---|
| >TIGR01206 lysW lysine biosynthesis protein LysW | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1102 | ||||
| 2kwj_A | 114 | Solution Structures Of The Double Phd Fingers Of Hu | 2e-04 | ||
| 2e6r_A | 92 | Solution Structure Of The Phd Domain In Smcy Protei | 4e-04 |
| >pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human Transcriptional Protein Dpf3 Bound To A Histone Peptide Containing Acetylation At Lysine 14 Length = 114 | Back alignment and structure |
|
| >pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein Length = 92 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.0 bits (178), Expect = 4e-13
Identities = 88/662 (13%), Positives = 182/662 (27%), Gaps = 198/662 (29%)
Query: 446 MDMKARGMYVCRTLSYKGAEFEVIEAPLEAEMTDMYKKAAEFWAELRVELLSASAF--LA 503
MD + YK +++ +A + + K + ++ +LS +
Sbjct: 7 MDFETGEH----QYQYK----DILSVFEDAFVDNFDCKDVQ---DMPKSILSKEEIDHII 55
Query: 504 NDKPNSSQLWRLYWSGHQRFFRHMCMSAKVPATVRLAKKALAEGKCVVIGLQSTGEARTE 563
K S RL+W+ L S E +
Sbjct: 56 MSKDAVSGTLRLFWT-----------------------------------LLSKQEEMVQ 80
Query: 564 EAVTKYGLELD-DFI--------SGPRELLLKFVEENYPLPEKPEPLPG-----EESVKE 609
+ V + L ++ F+ P + ++E+ L + + +
Sbjct: 81 KFVEE-VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 610 LQRKRHSASP--GVSFKGRVRKAAKWKPASDGESDEESETDSAHESTESDDEFQICEI-- 665
L++ P V G V + K A D + + +F+I +
Sbjct: 140 LRQALLELRPAKNVLIDG-VLGSGKTWVALDVCLSYK---------VQCKMDFKIFWLNL 189
Query: 666 --CNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKEKTEEYLQSRHAYLT 723
CNS E ++LQ Q+ + + I HS + + L+S
Sbjct: 190 KNCNSPETVLEMLQ-KLLYQIDPNWTSRSDHSSNIKLR--IHSIQAELRRLLKS------ 240
Query: 724 ELLKRYEAALERKSKILDIIRSMDFPNNPLDDIVDQLGGPDKVAEMTGRRGMLVRASSGK 783
K YE L ++ L ++ + +L+ + K
Sbjct: 241 ---KPYENCL--------LV---------LLNVQN----AKAWNAFNLSCKILL-TTRFK 275
Query: 784 GVT--YQARNTKEVTMEMVNMHEKQLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRV 841
VT A T ++++ H + +++ + Q R
Sbjct: 276 QVTDFLSAATTTHISLD----HHSMTLTPDEVK-SLLLKY--LDCRPQDLPREVLT---T 325
Query: 842 HITLELPWSADRAIQQFGRTHRSNQASAPEYRIIFTNLGGERRFASIVAKRLESLGALTQ 901
+ P R + + R A+ ++ + + + +I+ SL L
Sbjct: 326 N-----P----RRLSIIAESIRDGLATWDNWKHVNCD-----KLTTIIES---SLNVLEP 368
Query: 902 GDRRAGLSLSAYNYDSAFGKKALMMMYR--GIMEQDVLPVVPPGC-----SSEKPETIQD 954
+ R M+ + +P +
Sbjct: 369 AEYRK--------------------MFDRLSVFPPSAH--IPTILLSLIWFDVIKSDVMV 406
Query: 955 FMTK-AKAALV-------SVGI--VRDTVLGNGKDYGKLSGRIIDSDMHDVGRFLNRLLG 1004
+ K K +LV ++ I + + ++ L I+D + L+
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 1005 LPPD------I--------QNRLFELFISI-LDL--LVQNARIEGNLDSGIVDMKANIIE 1047
D I LF + LD L Q R + + + + +
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 1048 LQ 1049
L+
Sbjct: 527 LK 528
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
| >1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 | Back alignment and structure |
|---|
| >2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
| >2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
| >3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 | Back alignment and structure |
|---|
| >3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 | Back alignment and structure |
|---|
| >3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 | Back alignment and structure |
|---|
| >1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 | Back alignment and structure |
|---|
| >1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 | Back alignment and structure |
|---|
| >3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129 | Back alignment and structure |
|---|
| >2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142 | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
| >3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Length = 59 | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 | Back alignment and structure |
|---|
| >1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Length = 60 | Back alignment and structure |
|---|
| >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1102 | |||
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.69 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.53 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.49 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.48 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.34 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.14 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.01 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.01 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 98.99 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 98.98 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 98.97 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 98.96 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 98.94 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 98.91 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 98.89 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 98.87 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 98.84 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 98.57 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 98.38 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 98.31 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 98.2 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 98.19 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 98.18 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 98.16 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 98.14 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 98.13 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 98.11 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 98.02 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 97.99 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 97.99 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 97.97 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 97.94 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 97.93 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 97.92 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 97.9 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 97.9 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 97.89 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 97.81 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 97.8 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 97.75 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 97.71 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 97.69 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 97.66 | |
| 2e6r_A | 92 | Jumonji/ARID domain-containing protein 1D; PHD dom | 97.66 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 97.59 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 97.57 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 97.51 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 97.47 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 97.46 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 97.43 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 97.43 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 97.41 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 97.41 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 97.4 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 97.38 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 97.36 | |
| 1mm2_A | 61 | MI2-beta; PHD, zinc finger, protein scaffold, DNA | 97.31 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 97.29 | |
| 2yql_A | 56 | PHD finger protein 21A; PHD domain, structural gen | 97.27 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 97.25 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 97.25 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 97.25 | |
| 1fp0_A | 88 | KAP-1 corepressor; PHD domain, C3HC4 type zinc bin | 97.22 | |
| 1f62_A | 51 | Transcription factor WSTF; Zn-finger; NMR {Homo sa | 97.2 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 97.16 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.16 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 97.14 | |
| 2lri_C | 66 | Autoimmune regulator; Zn binding protein domain, a | 97.13 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 97.08 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 97.07 | |
| 3shb_A | 77 | E3 ubiquitin-protein ligase UHRF1; unmodified hist | 97.05 | |
| 1wev_A | 88 | Riken cDNA 1110020M19; structural genomics, PHD do | 97.03 | |
| 3asl_A | 70 | E3 ubiquitin-protein ligase UHRF1; histone reader | 96.96 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 96.92 | |
| 1xwh_A | 66 | Autoimmune regulator; PHD domain, Zn binding domai | 96.92 | |
| 2puy_A | 60 | PHD finger protein 21A; PHD finger, histone CODE, | 96.91 | |
| 3ask_A | 226 | E3 ubiquitin-protein ligase UHRF1; histone reader | 96.91 | |
| 2e6s_A | 77 | E3 ubiquitin-protein ligase UHRF2; PHD domain, str | 96.89 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 95.9 | |
| 3u5n_A | 207 | E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b | 96.78 | |
| 2kwj_A | 114 | Zinc finger protein DPF3; acetyl-lysine, transcrip | 96.77 | |
| 2yt5_A | 66 | Metal-response element-binding transcription facto | 96.76 | |
| 2l5u_A | 61 | Chromodomain-helicase-DNA-binding protein 4; CHD4, | 96.73 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 96.72 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 96.72 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 96.6 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 96.53 | |
| 2l43_A | 88 | N-teminal domain from histone H3.3, linker, PHD1 f | 96.38 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 96.35 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 96.33 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 96.26 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 96.2 | |
| 3v43_A | 112 | Histone acetyltransferase KAT6A; MOZ, PHD finger, | 96.18 | |
| 3o36_A | 184 | Transcription intermediary factor 1-alpha; TRIM24, | 96.17 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 96.16 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 96.09 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 96.06 | |
| 2ku3_A | 71 | Bromodomain-containing protein 1; PHD finger, chro | 96.01 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 95.97 | |
| 2ro1_A | 189 | Transcription intermediary factor 1-beta; KAP, TIF | 95.95 | |
| 2ysm_A | 111 | Myeloid/lymphoid or mixed-lineage leukemia protein | 95.92 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 95.89 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 95.88 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 95.86 | |
| 2lv9_A | 98 | Histone-lysine N-methyltransferase MLL5; zinc fing | 95.84 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 95.77 | |
| 2k16_A | 75 | Transcription initiation factor TFIID subunit 3; p | 95.75 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 95.56 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 95.26 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 95.15 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 95.04 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 94.93 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 94.82 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 94.73 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 94.71 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 94.67 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 94.43 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 94.09 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 94.07 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 94.02 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 93.65 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 93.24 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 93.2 | |
| 2ysm_A | 111 | Myeloid/lymphoid or mixed-lineage leukemia protein | 93.06 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 92.21 | |
| 1pft_A | 50 | TFIIB, PFTFIIBN; N-terminal domain, transcription | 92.13 | |
| 3h0g_L | 63 | DNA-directed RNA polymerases I, II, and III subuni | 92.13 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 92.05 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 92.01 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 91.92 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 91.58 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 91.19 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 91.07 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 90.28 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 89.93 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 89.47 | |
| 1wen_A | 71 | Inhibitor of growth family, member 4; ING1-like pr | 88.79 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 88.14 | |
| 3h0g_I | 113 | DNA-directed RNA polymerases I, II, and III subuni | 87.97 | |
| 1weu_A | 91 | Inhibitor of growth family, member 4; structural g | 86.18 | |
| 1vq8_Z | 83 | 50S ribosomal protein L37AE; ribosome 50S, protein | 86.08 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 85.61 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 85.2 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 83.46 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 83.3 | |
| 2lbm_A | 142 | Transcriptional regulator ATRX; metal binding prot | 82.66 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 82.43 | |
| 1twf_I | 122 | B12.6, DNA-directed RNA polymerase II 14.2 kDa pol | 82.07 | |
| 2vnf_A | 60 | ING 4, P29ING4, inhibitor of growth protein 4; ace | 81.21 | |
| 3qt1_I | 133 | DNA-directed RNA polymerases I, II, and III subun; | 81.17 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 80.86 | |
| 4gne_A | 107 | Histone-lysine N-methyltransferase NSD3; zinc fing | 80.54 |
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-15 Score=174.74 Aligned_cols=228 Identities=18% Similarity=0.217 Sum_probs=143.6
Q ss_pred CCcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccC-ceEEEEEcCCchhhhHHhhhhhh
Q 038397 215 KSLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGR-RKALWISVGSDLKFDARRDLDDV 293 (1102)
Q Consensus 215 g~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr-~~~~w~s~s~~L~~Da~RDl~di 293 (1102)
..|-+-|.++|.+....+. .+.|.+++|.||.||+.++.++|.+....|. ++++++.- ..|..-..+.+...
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~------~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNK------LGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHH------TTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhh------CCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHH
Confidence 3577999999987754432 2468899999999999999888888777665 44666654 67888888888877
Q ss_pred CCCcccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCCC
Q 038397 294 GATCIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGS 373 (1102)
Q Consensus 294 G~~~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~ 373 (1102)
... +.+.-+..-. .........|+++||.+|.... ++.. ..| .+||+||||+++|..
T Consensus 109 ~~~-~~v~~~~g~~-----~~~~~~~~~ivi~t~~~l~~~~-----~l~~------~~~-~~vIvDEaH~~kn~~----- 165 (500)
T 1z63_A 109 APH-LRFAVFHEDR-----SKIKLEDYDIILTTYAVLLRDT-----RLKE------VEW-KYIVIDEAQNIKNPQ----- 165 (500)
T ss_dssp CTT-SCEEECSSST-----TSCCGGGSSEEEEEHHHHTTCH-----HHHT------CCE-EEEEEETGGGGSCTT-----
T ss_pred CCC-ceEEEEecCc-----hhccccCCcEEEeeHHHHhccc-----hhcC------CCc-CEEEEeCccccCCHh-----
Confidence 532 2222111100 0111234579999999997532 1211 123 489999999999863
Q ss_pred CchhHHHHHHHHhhhCCCccEEEEecCCCCC-CCcc---chhhhccccCCCCCCCCHHHHHH----HHhccChhHHHHHH
Q 038397 374 QPTRTGEAVLELQARLPEARVVYCSATGASE-PRNM---GYMVRLGLWGAGTCFKDFQIFLG----ALDKGGVGALELVA 445 (1102)
Q Consensus 374 ~~s~~g~avl~LQ~~lP~ARvvY~SATgase-p~Nl---~ym~RLGLWg~gt~f~~~~~f~~----a~~~gGv~amE~va 445 (1102)
++...++.. ++..+++..|||-..+ +..| ..+.+-++ |.++.+|.+ .++.+.....+-+.
T Consensus 166 --~~~~~~l~~----l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~------~~~~~~f~~~~~~~~~~~~~~~~~~l~ 233 (500)
T 1z63_A 166 --TKIFKAVKE----LKSKYRIALTGTPIENKVDDLWSIMTFLNPGL------LGSYSEFKSKFATPIKKGDNMAKEELK 233 (500)
T ss_dssp --SHHHHHHHT----SCEEEEEEECSSCSTTCHHHHHHHHHHHSTTT------TCCHHHHHTTTHHHHHTTCHHHHHHHH
T ss_pred --HHHHHHHHh----hccCcEEEEecCCCCCCHHHHHHHHHHhCCCc------CCCHHHHHHHhccccccccHHHHHHHH
Confidence 566666654 4566889999998642 2222 22333344 445666543 34555544444444
Q ss_pred HHHHhccceeeecc-------CCCCceeEEEeccCcHHHHHHHHHHHH
Q 038397 446 MDMKARGMYVCRTL-------SYKGAEFEVIEAPLEAEMTDMYKKAAE 486 (1102)
Q Consensus 446 ~dlK~~G~yiaR~L-------Sf~gvef~i~e~~l~~~~~~~Yd~~a~ 486 (1102)
.-+ ...+++|.. .+......++.+++++++.++|+...+
T Consensus 234 ~~l--~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~ 279 (500)
T 1z63_A 234 AII--SPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVE 279 (500)
T ss_dssp HHH--TTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHH
T ss_pred HHH--hhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHH
Confidence 333 234455533 344556667778999999999987543
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
| >2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A | Back alignment and structure |
|---|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
| >2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
| >1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B | Back alignment and structure |
|---|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
| >1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} | Back alignment and structure |
|---|
| >3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A | Back alignment and structure |
|---|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
| >2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* | Back alignment and structure |
|---|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
| >1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1 | Back alignment and structure |
|---|
| >3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
| >1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A | Back alignment and structure |
|---|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
| >3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ... | Back alignment and structure |
|---|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A | Back alignment and structure |
|---|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
| >1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ... | Back alignment and structure |
|---|
| >2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* | Back alignment and structure |
|---|
| >3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
| >4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1102 | ||||
| d1f62a_ | 51 | g.50.1.2 (A:) Williams-Beuren syndrome transcripti | 2e-10 | |
| d1fp0a1 | 70 | g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- | 3e-10 | |
| d1weea_ | 72 | g.50.1.2 (A:) PHD finger protein At1g33420 {Thale | 2e-09 | |
| d1weva_ | 88 | g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu | 3e-08 | |
| d1we9a_ | 64 | g.50.1.2 (A:) PHD finger protein At5g26210 {Thale | 3e-08 | |
| d1mm2a_ | 61 | g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens | 3e-07 | |
| d1wema_ | 76 | g.50.1.2 (A:) Death associated transcription facto | 5e-07 | |
| d1vyxa_ | 60 | g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do | 6e-04 | |
| d2pnxa1 | 51 | g.50.1.2 (A:195-245) Inhibitor of growth protein 4 | 8e-04 | |
| d1wepa_ | 79 | g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus | 0.001 | |
| d1wesa_ | 71 | g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I | 0.001 | |
| d1zbdb_ | 124 | g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat | 0.004 | |
| d1pd0a5 | 85 | g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha | 0.004 | |
| d1wila_ | 89 | g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human | 0.004 |
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: PHD domain domain: Williams-Beuren syndrome transcription factor, WSTF species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.0 bits (132), Expect = 2e-10
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 663 CEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKEKT 711
C++C + E KL+ C C + H CL P + +V +W C +C+ T
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPAT 51
|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60 | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 | Back information, alignment and structure |
|---|
| >d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 | Back information, alignment and structure |
|---|
| >d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1102 | |||
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.79 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.64 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.52 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 98.43 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 98.37 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.34 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 98.09 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 97.98 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 97.47 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 97.38 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 97.37 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 97.37 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 97.28 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 97.2 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 97.18 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 97.13 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 97.06 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 97.03 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 96.99 | |
| d1f62a_ | 51 | Williams-Beuren syndrome transcription factor, WST | 96.92 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 96.91 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 96.84 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 96.84 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 96.46 | |
| d1fp0a1 | 70 | Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo | 96.43 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 96.3 | |
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 95.98 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 95.63 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 95.58 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 95.33 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 95.08 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 95.03 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 95.0 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 95.0 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 94.81 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 94.72 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 94.63 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 93.83 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 93.8 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 93.3 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 93.1 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 90.54 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 89.24 | |
| d1pd0a5 | 85 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 86.08 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 83.54 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 80.39 |
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.79 E-value=4.8e-08 Score=100.28 Aligned_cols=202 Identities=17% Similarity=0.214 Sum_probs=126.9
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCc-eEEEEEcCCchhhhHHhhhhhhC
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRR-KALWISVGSDLKFDARRDLDDVG 294 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~-~~~w~s~s~~L~~Da~RDl~diG 294 (1102)
.|=+=|+|+|.+.-.+.. .+.|+++||-+|.||+.++-+++.+.+.++.. +++-+. ...+..-.++.+....
T Consensus 12 ~L~~yQ~~~v~~~~~~~~------~~~g~iLaDe~GlGKT~~~i~~~~~~~~~~~~~~~LIv~-p~~l~~~W~~e~~~~~ 84 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNK------LGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVIC-PLSVLKNWEEELSKFA 84 (230)
T ss_dssp CCCHHHHHHHHHHHHHHH------TTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEE-CSTTHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHhhh------cCCCEEEEeCCCCChHHHHHHhhhhhhhcccccccceec-chhhhhHHHHHHHhhc
Confidence 466889999986544432 25689999999999999999999999988874 455444 5666666666665543
Q ss_pred CCcccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCCCC
Q 038397 295 ATCIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQ 374 (1102)
Q Consensus 295 ~~~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~ 374 (1102)
.. ..+....... +.....+..|+.+||..+... .+|.++ .| .+||+||||+.+|..
T Consensus 85 ~~-~~~~~~~~~~-----~~~~~~~~~vvi~~~~~~~~~-----~~l~~~------~~-~~vI~DEah~~k~~~------ 140 (230)
T d1z63a1 85 PH-LRFAVFHEDR-----SKIKLEDYDIILTTYAVLLRD-----TRLKEV------EW-KYIVIDEAQNIKNPQ------ 140 (230)
T ss_dssp TT-SCEEECSSST-----TSCCGGGSSEEEEEHHHHTTC-----HHHHTC------CE-EEEEEETGGGGSCTT------
T ss_pred cc-ccceeecccc-----chhhccCcCEEEeeHHHHHhH-----HHHhcc------cc-eEEEEEhhhcccccc------
Confidence 32 2222221111 111123457999999998643 223221 22 589999999999874
Q ss_pred chhHHHHHHHHhhhCCCccEEEEecCCCC-CCCccchhhhccccCCCCCCCCHHHHHH----HHhccChhHHHHHHHHHH
Q 038397 375 PTRTGEAVLELQARLPEARVVYCSATGAS-EPRNMGYMVRLGLWGAGTCFKDFQIFLG----ALDKGGVGALELVAMDMK 449 (1102)
Q Consensus 375 ~s~~g~avl~LQ~~lP~ARvvY~SATgas-ep~Nl~ym~RLGLWg~gt~f~~~~~f~~----a~~~gGv~amE~va~dlK 449 (1102)
|++..+...|+. .+++..|||-.. .+.+|-.+-++ -++ .+|.++..|.+ .+++++....|-+-.-|
T Consensus 141 -s~~~~~~~~l~a----~~r~~LTgTPi~n~~~dl~~ll~~--l~p-~~~~~~~~F~~~~~~~~~~~~~~~~~~L~~~l- 211 (230)
T d1z63a1 141 -TKIFKAVKELKS----KYRIALTGTPIENKVDDLWSIMTF--LNP-GLLGSYSEFKSKFATPIKKGDNMAKEELKAII- 211 (230)
T ss_dssp -SHHHHHHHTSCE----EEEEEECSSCSTTCHHHHHHHHHH--HST-TTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-
T ss_pred -hhhhhhhhhhcc----ceEEEEecchHHhHHHHHHHHHHh--hCC-CcCCCHHHHHHHHhhhhhccCHHHHHHHHHHh-
Confidence 677777776643 467888999983 34443333332 232 35667777754 46667666666555444
Q ss_pred hccceeeec
Q 038397 450 ARGMYVCRT 458 (1102)
Q Consensus 450 ~~G~yiaR~ 458 (1102)
...+++|.
T Consensus 212 -~~~~lRr~ 219 (230)
T d1z63a1 212 -SPFILRRT 219 (230)
T ss_dssp -TTTEECCC
T ss_pred -hccEEEEe
Confidence 34566653
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|