Citrus Sinensis ID: 038409

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVLTALSGQIYIGEIMNFREYPFLARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHENGSVVIRIQRVIFTDIIQH
Secondary Structure (PSIPRED)
cccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccccccEEccccccccccccccccccEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccccEEEEEcccccccccccccHHHHHccHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHcEEEEEEEEEEEccccEEEEEEEEEEEEEEEc
Coil and Loop (DISEMBL)
MSCHAALIGAGTAGLGATRELSREGYLLVVFERAkgltqthlampqvelqpglVLTALSGQIyigeimnfreypflarndgtadprrfrghwetAGVAKVYIASKLVAGYNNMLLYSMIESIHENGSVVIRIQRVIFTDIIQH
Flexible Loop (DISEMBL)
mschaaligagtaglgatrELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVLTALSGQIYIGEIMNFREYPFLARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHENGSVVIRIQRVIFTDIIQH
Low Complexity Region (SEG)
MSCHaaligagtaglgatRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVLTALSGQIYIGEIMNFREYPFLARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHENGSVVIRIQRVIFTDIIQH
Disordered region (IsUnstruct)
****AALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVLTALSGQIYIGEIMNFREYPFLARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHENGSVVIRIQRVIFTDII**
Disordered Region (DISOPRED)
*SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQV**********LSGQIYIGEIMNFREYPFLARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHENGSVVIRIQRVIFTDIIQH
Disordered Region (DISEMBL)
MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVLTALSGQIYIGEIMNFREYPFLARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHENGSVVIRIQRVIFTDIIQH
Disordered Region (DISPRO)
*SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVLTALSGQIYIGEIMNFREYPFLARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHENGSVVIRIQRVIFTDIIQH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVLTALSGQIYIGEIMNFREYPFLARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHENGSVVIRIQRVIFTDIIQH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q9SXD5	450	Flavin-containing monooxy	yes	no	0.685	0.217	0.379	8e-12
Q9C8U0	450	Flavin-containing monooxy	yes	no	0.685	0.217	0.370	1e-10
Q9SXE1	462	Flavin-containing monooxy	no	no	0.636	0.196	0.375	2e-09
Q9SS04	459	Flavin-containing monooxy	no	no	0.643	0.200	0.378	9e-08
Q94BV5	452	Flavin-containing monooxy	no	no	0.643	0.203	0.403	2e-07
Q9FWW6	468	Flavin-containing monooxy	no	no	0.615	0.188	0.366	5e-07
Q9SH25	168	Putative flavin-containin	no	no	0.643	0.547	0.394	6e-07
Q9FF12	460	Flavin-containing monooxy	no	no	0.594	0.184	0.333	2e-06
Q9FLK4	461	Flavin-containing monooxy	no	no	0.594	0.184	0.340	2e-06
Q9SXD9	464	Flavin-containing monooxy	no	no	0.706	0.217	0.375	6e-06

>sp|Q9SXD5|GSXL3_ARATH Flavin-containing monooxygenase FMO GS-OX-like 3 OS=Arabidopsis thaliana GN=At1g62620 PE=2 SV=2

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 10/108 (9%)

Query: 2   SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQP-------GLV 54
           S H A+IGAG AGL A REL REG+ +VVFE+ K +  T +   +VE  P        +V
Sbjct: 10  SHHVAVIGAGPAGLVAARELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVV 69

Query: 55  LTALSGQIYIG---EIMNFREYPFLARNDGTADPRRFRGHWETAGVAK 99
            +++   + I    E   +R++PF+ R+  + DPRRF  H E     K
Sbjct: 70  HSSVYRSLRINGTRECTGYRDFPFVVRSGVSRDPRRFPSHGEVLAYLK 117

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: -EC: .EC: -

>sp|Q9C8U0|GSXL5_ARATH Flavin-containing monooxygenase FMO GS-OX-like 5 OS=Arabidopsis thaliana GN=At1g63370 PE=2 SV=2

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 10/108 (9%)

Query: 2   SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQP-------GLV 54
           S H A+IGAG AGL A REL REG+ +VVFE+ K +  T +   +VE  P        +V
Sbjct: 10  SHHVAVIGAGPAGLVAARELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVV 69

Query: 55  LTALSGQIYIG---EIMNFREYPFLARNDGTADPRRFRGHWETAGVAK 99
            +++   + I    E   +R++PF+ R+  + D RRF  H E     K
Sbjct: 70  HSSVYRSLRINGTRECTGYRDFPFVVRSGVSRDRRRFPSHGEVLAYLK 117

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9SXE1|GSOX3_ARATH Flavin-containing monooxygenase FMO GS-OX3 OS=Arabidopsis thaliana GN=FMOGS-OX3 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 13/104 (12%)

Query: 2   SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVLTALSGQ 61
           S H A+IGAG AGL  +REL REG+ +VVFER K +    +  P+ +  P L L     +
Sbjct: 10  SKHVAVIGAGPAGLITSRELRREGHSVVVFEREKQVGGLWVYTPKSDSDP-LSLDPTRSK 68

Query: 62  IYIG-----------EIMNFREYPFLAR-NDGTADPRRFRGHWE 93
           ++             E M  R++PFL R +D + D RR+  H E
Sbjct: 69  VHSSIYESLRTNVPRESMGVRDFPFLPRFDDESRDARRYPNHRE 112

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Prefers probably short-chain methylthioalkyl glucosinolates in cv. Landsberg erecta.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9SS04|GSOX1_ARATH Flavin-containing monooxygenase FMO GS-OX1 OS=Arabidopsis thaliana GN=FMOGS-OX1 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/103 (37%), Positives = 50/103 (48%), Gaps = 11/103 (10%)

Query: 2   SCHAALIGAGTAGLGATRELSREGYLLVVFERAK---GLTQTHLAMPQVELQPGLVLTAL 58
           S H A+IGAG AGL   REL REG+ +VVF+R K   GL           L      T +
Sbjct: 10  SKHVAVIGAGAAGLVTARELRREGHTVVVFDREKQVGGLWNYSSKADSDPLSLDTTRTIV 69

Query: 59  SGQIYIG-------EIMNFREYPFLAR-NDGTADPRRFRGHWE 93
              IY         E M F ++PF+ R +D + D RR+  H E
Sbjct: 70  HTSIYESLRTNLPRECMGFTDFPFVPRIHDISRDSRRYPSHRE 112

Catalyzes the conversion of methylthioalkyl glucosinolates into methylsulfinylalkyl glucosinolates. Able to S-oxygenate both desulfo- and intact 4-methylthiobutyl glucosinolates, but no activity with methionine, dihomomethionine or 5-methylthiopentaldoxime.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q94BV5|GSXL4_ARATH Flavin-containing monooxygenase FMO GS-OX-like 4 OS=Arabidopsis thaliana GN=At1g62600 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 12/104 (11%)

Query: 2   SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQP-------GLV 54
           S H A+IGAG AGL A REL REG+ +VVFER K +  T +    +E  P        +V
Sbjct: 10  SHHVAVIGAGAAGLVAARELRREGHSVVVFERQKQVGGTWIYTDHIEPDPLSVDPTRSVV 69

Query: 55  LTALSGQIYIG---EIMNFREYPFLARND--GTADPRRFRGHWE 93
            +++ G +      E M +R++PF+ R+D   + DPRRF  H E
Sbjct: 70  HSSVYGSLRTNLPRECMGYRDFPFVIRSDVSESRDPRRFPSHGE 113

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9FWW6|GSXL1_ARATH Flavin-containing monooxygenase FMO GS-OX-like 1 OS=Arabidopsis thaliana GN=At1g12160 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 13/101 (12%)

Query: 4   HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLV---LTALSG 60
           H A+IG G AGL A REL REG+ ++ FER K +    +   +V+     V    T +  
Sbjct: 11  HVAVIGLGAAGLVAVRELRREGHTVIGFEREKHVGGLWVYTDRVDSDSVSVDPDRTIVHS 70

Query: 61  QIYIG-------EIMNFREYPFLAR-NDGTADPRRFRGHWE 93
            IY         E M + ++PF+ R +DG  DPRR+  H E
Sbjct: 71  SIYQSLRTNLPRECMGYSDFPFVTRSSDG--DPRRYPDHRE 109

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9SH25|GSXLY_ARATH Putative flavin-containing monooxygenase FMO GS-OX-like 11 OS=Arabidopsis thaliana GN=At1g63390 PE=5 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 12/104 (11%)

Query: 2   SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQP-------GLV 54
           S H A+IGAG AGL A REL REG+ +VVFER K +  T +    +E  P        +V
Sbjct: 10  SHHVAVIGAGAAGLVAARELRREGHSVVVFERQKQVGGTWIYTDHIEPDPLSVDPTRSVV 69

Query: 55  LTALSGQIYIG---EIMNFREYPFLARN--DGTADPRRFRGHWE 93
            +++ G +      E M +R++PF+ R+    + DPRRF  H E
Sbjct: 70  HSSVYGSLRTNLPRECMGYRDFPFVVRSGVSESRDPRRFPSHGE 113

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9FF12|GSXL9_ARATH Flavin-containing monooxygenase FMO GS-OX-like 9 OS=Arabidopsis thaliana GN=At5g07800 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 17/102 (16%)

Query: 7   LIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQP--GLVLTALSGQIYI 64
           +IGAG AGL + REL +EG+ +VV E+ + +       P VE +   G    +++G++ +
Sbjct: 18  VIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQWFYQPNVEEEDPLGRSSGSINGELKV 77

Query: 65  G-------------EIMNFREYPFLARNDGTADPRRFRGHWE 93
                         EIM + ++PFLA+     D RRF GH E
Sbjct: 78  HSSIYSSLRLTSPREIMGYSDFPFLAKKG--RDMRRFPGHKE 117

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9FLK4|GSXL8_ARATH Flavin-containing monooxygenase FMO GS-OX-like 8 OS=Arabidopsis thaliana GN=At5g61290 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 12/97 (12%)

Query: 7   LIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVLT---ALSGQIY 63
           +IGAG +GL + REL +EG+ +VV E+   +    L  P V+ +  L  T    +   +Y
Sbjct: 18  VIGAGPSGLVSARELKKEGHKVVVMEQNHDVGGQWLYQPNVDEEDTLGKTKTLKVHSSVY 77

Query: 64  IG-------EIMNFREYPFLARNDGTADPRRFRGHWE 93
                    E+M F ++PF+A+     D RRF GH E
Sbjct: 78  SSLRLASPREVMGFSDFPFIAKEG--RDSRRFPGHEE 112

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9SXD9|GSXL7_ARATH Flavin-containing monooxygenase FMO GS-OX-like 7 OS=Arabidopsis thaliana GN=At1g62580 PE=2 SV=2

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/112 (37%), Positives = 57/112 (50%), Gaps = 11/112 (9%)

Query: 2   SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQP-------GLV 54
           S H A+IGAG AGL A REL REG+ +VVFER   +       P VE  P        ++
Sbjct: 11  SNHVAVIGAGAAGLVAARELRREGHSVVVFERGNHIGGVWAYTPNVEPDPLSIDPTRPVI 70

Query: 55  LTALSGQ---IYIGEIMNFREYPFLAR-NDGTADPRRFRGHWETAGVAKVYI 102
            ++L      I   E M F ++PF  R  +G+ DPRR  GH E     + ++
Sbjct: 71  HSSLYSSLRTIIPQECMGFTDFPFSTRLENGSRDPRRHPGHSEVLAYLRDFV 122

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
224125168	459	predicted protein [Populus trichocarpa]	0.650	0.202	0.417	1e-12
255577823	423	dimethylaniline monooxygenase, putative	0.643	0.217	0.431	5e-12
359474385	432	PREDICTED: flavin-containing monooxygena	0.643	0.212	0.431	4e-11
297741161	438	unnamed protein product [Vitis vinifera]	0.643	0.210	0.431	5e-11
147790603	412	hypothetical protein VITISV_039614 [Viti	0.643	0.223	0.421	4e-10
359496018	446	PREDICTED: LOW QUALITY PROTEIN: flavin-c	0.643	0.206	0.421	5e-10
5454204	458	T3P18.18 [Arabidopsis thaliana]	0.685	0.213	0.379	6e-10
30696735	450	flavin-containing monooxygenase-like pro	0.685	0.217	0.379	6e-10
116293735	461	FMO-like protein [Eutrema halophilum]	0.629	0.195	0.405	1e-09
449526922	466	PREDICTED: flavin-containing monooxygena	0.643	0.197	0.392	1e-09

>gi|224125168|ref|XP_002329910.1| predicted protein [Populus trichocarpa] gi|222871147|gb|EEF08278.1| predicted protein [Populus trichocarpa]

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/103 (41%), Positives = 61/103 (59%), Gaps = 10/103 (9%)

Query: 1   MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQP-------GL 53
           +S H A+IGAG AGL + REL REG+ +VVFER   +  T +  P+VE  P        +
Sbjct: 10  ISRHVAVIGAGAAGLVSARELRREGHDVVVFERDNQVGGTWVYNPRVEPDPLSLDPNRRI 69

Query: 54  VLTALSGQIYIG---EIMNFREYPFLARNDGTADPRRFRGHWE 93
           + ++L   +      E+M F++YPF+A+ND   D RRF GH E
Sbjct: 70  IHSSLYSSLRTNLPREVMGFKDYPFIAKNDKKRDQRRFPGHRE 112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577823|ref|XP_002529785.1| dimethylaniline monooxygenase, putative [Ricinus communis] gi|223530729|gb|EEF32599.1| dimethylaniline monooxygenase, putative [Ricinus communis]

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 59/102 (57%), Gaps = 10/102 (9%)

Query: 2   SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQP-GLVL--TAL 58
           S H A+IGAG +GL   REL REG+ +VVFER   +  T +  P+VE  P GL    T +
Sbjct: 7   SRHVAVIGAGASGLVTARELRREGHEVVVFERQSQIGGTWVYDPRVEPDPLGLDPNRTII 66

Query: 59  SGQIYIG-------EIMNFREYPFLARNDGTADPRRFRGHWE 93
              +Y         E+M F++YPF+ +NDG  DPRR+  H E
Sbjct: 67  HSSLYKSLRTNLPRELMGFKDYPFIPKNDGMRDPRRYPCHRE 108

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474385|ref|XP_003631449.1| PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 3-like [Vitis vinifera]

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 56/102 (54%), Gaps = 10/102 (9%)

Query: 2   SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQP-------GLV 54
           SC+ A+IGAG AGL A REL REG+  VVFER   +  T +  P VE  P        +V
Sbjct: 3   SCNVAVIGAGPAGLVAARELRREGHKAVVFERQAQVGGTWVYQPSVEADPLASDPSRPIV 62

Query: 55  LTALSGQIYIG---EIMNFREYPFLARNDGTADPRRFRGHWE 93
            ++L   +      E+M FR+YPFL+      D RRF GH E
Sbjct: 63  HSSLYPSLRTNLPREVMGFRDYPFLSTGLAHRDSRRFPGHRE 104

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741161|emb|CBI31892.3| unnamed protein product [Vitis vinifera]

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 56/102 (54%), Gaps = 10/102 (9%)

Query: 2   SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQP-------GLV 54
           SC+ A+IGAG AGL A REL REG+  VVFER   +  T +  P VE  P        +V
Sbjct: 3   SCNVAVIGAGPAGLVAARELRREGHKAVVFERQAQVGGTWVYQPSVEADPLASDPSRPIV 62

Query: 55  LTALSGQIYIG---EIMNFREYPFLARNDGTADPRRFRGHWE 93
            ++L   +      E+M FR+YPFL+      D RRF GH E
Sbjct: 63  HSSLYPSLRTNLPREVMGFRDYPFLSTGLAHRDSRRFPGHRE 104

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790603|emb|CAN74224.1| hypothetical protein VITISV_039614 [Vitis vinifera]

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 54/102 (52%), Gaps = 10/102 (9%)

Query: 2   SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQP-------GLV 54
           SC+ A+IGAG  GL A REL REG+  VVFER   +  T    P VE  P        +V
Sbjct: 10  SCNVAVIGAGPGGLVAARELRREGHKAVVFERQAQVGGTWEYQPSVEADPLASDPSRTIV 69

Query: 55  LTALSGQIYIG---EIMNFREYPFLARNDGTADPRRFRGHWE 93
            ++L   +      E+M FR+YPFL+      D RRF GH E
Sbjct: 70  HSSLYPSLRTNLPREVMGFRDYPFLSPGLAHRDSRRFPGHRE 111

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496018|ref|XP_003635133.1| PREDICTED: LOW QUALITY PROTEIN: flavin-containing monooxygenase FMO GS-OX-like 3-like [Vitis vinifera]

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 54/102 (52%), Gaps = 10/102 (9%)

Query: 2   SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQP-------GLV 54
           SC+ A+IGAG  GL A REL REG+  VVFER   +  T    P VE  P        +V
Sbjct: 10  SCNVAVIGAGPGGLVAARELRREGHKAVVFERQAQVGGTWEYQPSVEADPLASDPSRTIV 69

Query: 55  LTALSGQIYIG---EIMNFREYPFLARNDGTADPRRFRGHWE 93
            ++L   +      E+M FR+YPFL+      D RRF GH E
Sbjct: 70  HSSLYPSLRTNLPREVMGFRDYPFLSPGLAHRDSRRFPGHRE 111

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5454204|gb|AAD43619.1|AC005698_18 T3P18.18 [Arabidopsis thaliana]

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 10/108 (9%)

Query: 2   SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQP-------GLV 54
           S H A+IGAG AGL A REL REG+ +VVFE+ K +  T +   +VE  P        +V
Sbjct: 10  SHHVAVIGAGPAGLVAARELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVV 69

Query: 55  LTALSGQIYIG---EIMNFREYPFLARNDGTADPRRFRGHWETAGVAK 99
            +++   + I    E   +R++PF+ R+  + DPRRF  H E     K
Sbjct: 70  HSSVYRSLRINGTRECTGYRDFPFVVRSGVSRDPRRFPSHGEVLAYLK 117

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696735|ref|NP_176450.2| flavin-containing monooxygenase-like protein [Arabidopsis thaliana] gi|313118273|sp|Q9SXD5.2|GSXL3_ARATH RecName: Full=Flavin-containing monooxygenase FMO GS-OX-like 3; AltName: Full=Flavin-monooxygenase glucosinolate S-oxygenase-like 3 gi|332195866|gb|AEE33987.1| flavin-containing monooxygenase-like protein [Arabidopsis thaliana]

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 10/108 (9%)

Query: 2   SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQP-------GLV 54
           S H A+IGAG AGL A REL REG+ +VVFE+ K +  T +   +VE  P        +V
Sbjct: 10  SHHVAVIGAGPAGLVAARELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVV 69

Query: 55  LTALSGQIYIG---EIMNFREYPFLARNDGTADPRRFRGHWETAGVAK 99
            +++   + I    E   +R++PF+ R+  + DPRRF  H E     K
Sbjct: 70  HSSVYRSLRINGTRECTGYRDFPFVVRSGVSRDPRRFPSHGEVLAYLK 117

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116293735|gb|ABJ98059.1| FMO-like protein [Eutrema halophilum]

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/101 (40%), Positives = 55/101 (54%), Gaps = 11/101 (10%)

Query: 4   HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQP-GL--VLTALSG 60
           H A+IGAG +GL A REL REG+  VVF+R K +    +  P+ E  P GL    + +  
Sbjct: 12  HVAVIGAGASGLVAARELRREGHTAVVFDREKQVGGLWIYSPKAESDPLGLDPTRSIVHS 71

Query: 61  QIYIG-------EIMNFREYPFLARNDGTA-DPRRFRGHWE 93
            +Y         E M FR++PF+ R D  A DPRR+  H E
Sbjct: 72  SVYESLRTNLPRECMGFRDFPFVPRGDDVARDPRRYPSHKE 112

Source: Eutrema halophilum

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526922|ref|XP_004170462.1| PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 3-like, partial [Cucumis sativus]

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/102 (39%), Positives = 54/102 (52%), Gaps = 10/102 (9%)

Query: 2   SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLV---LTAL 58
           S   A+IGAG  GL + RELSREG+ +VVFER   +  T +  P++E  P  +    T +
Sbjct: 28  SRRVAVIGAGAGGLVSARELSREGHHVVVFERNTQIGGTWVYSPEIESDPLGIDPNRTRM 87

Query: 59  SGQIYIG-------EIMNFREYPFLARNDGTADPRRFRGHWE 93
              +Y         E+M  R+YPF+ R     DPRRF  H E
Sbjct: 88  HSSLYKSLRTNLPRELMGVRDYPFVPREGEDRDPRRFPSHPE 129

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2203921	452	AT1G62600 "AT1G62600" [Arabido	0.643	0.203	0.317	2.4e-14
TAIR|locus:2203866	450	AT1G62620 "AT1G62620" [Arabido	0.566	0.18	0.329	3e-14
TAIR|locus:2031336	450	AT1G63370 "AT1G63370" [Arabido	0.244	0.077	0.571	2.8e-13
TAIR|locus:2203911	464	NOGC1 "AT1G62580" [Arabidopsis	0.706	0.217	0.285	8.5e-12
TAIR|locus:2201971	459	FMO GS-OX5 "flavin-monooxygena	0.356	0.111	0.416	9.4e-11
TAIR|locus:2201991	465	FMO "AT1G12200" [Arabidopsis t	0.643	0.197	0.320	8.5e-10
TAIR|locus:2201981	470	AT1G12130 "AT1G12130" [Arabido	0.510	0.155	0.329	1.7e-09
TAIR|locus:2203871	457	FMO GS-OX2 "AT1G62540" [Arabid	0.517	0.161	0.344	4.2e-09
TAIR|locus:2202038	468	AT1G12160 "AT1G12160" [Arabido	0.356	0.108	0.403	8.2e-08
TAIR|locus:2203891	462	FMO GS-OX3 "AT1G62560" [Arabid	0.517	0.160	0.356	9.8e-08

TAIR|locus:2203921 AT1G62600 "AT1G62600" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
 Identities = 33/104 (31%), Positives = 49/104 (47%)

Query:     2 SCHXXXXXXXXXXXXXXRELSREGYLLVVFERAKGLTQTHLAMPQVELQP-------GLV 54
             S H              REL REG+ +VVFER K +  T +    +E  P        +V
Sbjct:    10 SHHVAVIGAGAAGLVAARELRREGHSVVVFERQKQVGGTWIYTDHIEPDPLSVDPTRSVV 69

Query:    55 LTALSGQIYIG---EIMNFREYPFLARND--GTADPRRFRGHWE 93
              +++ G +      E M +R++PF+ R+D   + DPRRF  H E
Sbjct:    70 HSSVYGSLRTNLPRECMGYRDFPFVIRSDVSESRDPRRFPSHGE 113

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2203866 AT1G62620 "AT1G62620" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
 Identities = 30/91 (32%), Positives = 47/91 (51%)

Query:    19 RELSREGYLLVVFERAKGLTQTHLAMPQVELQP-------GLVLTALSGQIYIG---EIM 68
             REL REG+ +VVFE+ K +  T +   +VE  P        +V +++   + I    E  
Sbjct:    27 RELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVVHSSVYRSLRINGTRECT 86

Query:    69 NFREYPFLARNDGTADPRRFRGHWETAGVAK 99
              +R++PF+ R+  + DPRRF  H E     K
Sbjct:    87 GYRDFPFVVRSGVSRDPRRFPSHGEVLAYLK 117

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2031336 AT1G63370 "AT1G63370" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
 Identities = 20/35 (57%), Positives = 26/35 (74%)

Query:   109 GYNNMLLYSMIESIHENGSVVIRIQRVIFTDIIQH 143
             GYNN+  +SMIES+HE+GSVV +  + I  DII H
Sbjct:   251 GYNNLWTHSMIESVHEDGSVVYQNGKTISVDIIMH 285

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2203911 NOGC1 "AT1G62580" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 8.5e-12, Sum P(2) = 8.5e-12
 Identities = 32/112 (28%), Positives = 45/112 (40%)

Query:     2 SCHXXXXXXXXXXXXXXRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLV---LTAL 58
             S H              REL REG+ +VVFER   +       P VE  P  +      +
Sbjct:    11 SNHVAVIGAGAAGLVAARELRREGHSVVVFERGNHIGGVWAYTPNVEPDPLSIDPTRPVI 70

Query:    59 SGQIYIG-------EIMNFREYPFLAR-NDGTADPRRFRGHWETAGVAKVYI 102
                +Y         E M F ++PF  R  +G+ DPRR  GH E     + ++
Sbjct:    71 HSSLYSSLRTIIPQECMGFTDFPFSTRLENGSRDPRRHPGHSEVLAYLRDFV 122

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0031227 "intrinsic to endoplasmic reticulum membrane" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0019825 "oxygen binding" evidence=IDA

GO:0070026 "nitric oxide binding" evidence=IDA

TAIR|locus:2201971 FMO GS-OX5 "flavin-monooxygenase glucosinolate S-oxygenase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
 Identities = 25/60 (41%), Positives = 38/60 (63%)

Query:    93 ETAGVAK-VYIASKL--------VAGYNNMLLYSMIESIHENGSVVIRIQRVIFTDIIQH 143
             +  GVAK V+IAS+         + G NN+ L+SMIES+HE+G++V +  +V+  D I H
Sbjct:   223 DITGVAKEVHIASRSNPSKTYSKLPGSNNLWLHSMIESVHEDGTIVFQNGKVVQADTIVH 282

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=IMP

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

TAIR|locus:2201991 FMO "AT1G12200" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
 Identities = 33/103 (32%), Positives = 42/103 (40%)

Query:     2 SCHXXXXXXXXXXXXXXRELSREGYLLVVFERAKGLTQTHLAMPQVELQP-GLVLT--AL 58
             S H              REL REG+ +VV ER   +        QVE  P  L  T   +
Sbjct:    11 SRHVAVIGAGAAGLVAARELRREGHSVVVLERGSQIGGVWAYTSQVEPDPLSLDPTRPVV 70

Query:    59 SGQIYIG-------EIMNFREYPFLAR-NDGTADPRRFRGHWE 93
                +Y         E M F ++PF  R +DG+ DPRR   H E
Sbjct:    71 HSSLYRSLRTNIPRECMGFTDFPFATRPHDGSRDPRRHPAHTE 113

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:2201981 AT1G12130 "AT1G12130" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
 Identities = 29/88 (32%), Positives = 44/88 (50%)

Query:    19 RELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVL-----TALSGQIYIG-------E 66
             REL REG+ + +FER K +    +  P VE  P L+      T +   +Y         E
Sbjct:    27 RELRREGHTVTIFERQKQVGGLWVCTPNVE--PDLLSIDPDRTVVHSSVYQSLRTNLPRE 84

Query:    67 IMNFREYPFLAR-NDGTADPRRFRGHWE 93
              M + ++PF+ R +D + DPRR+  H E
Sbjct:    85 CMGYSDFPFVTRPDDESRDPRRYPDHRE 112

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2203871 FMO GS-OX2 "AT1G62540" [Arabidopsis thaliana (taxid:3702)]

 Score = 96 (38.9 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
 Identities = 30/87 (34%), Positives = 44/87 (50%)

Query:    19 RELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVL----TALSGQIYIG-------EI 67
             RELSREG+ +VV ER K +    +  P+ E  P L L    + +   +Y         E 
Sbjct:    27 RELSREGHTVVVLEREKEVGGLWIYSPKAESDP-LSLDPTRSIVHSSVYESLRTNLPREC 85

Query:    68 MNFREYPFLAR-NDGTADPRRFRGHWE 93
             M F ++PF+ R +D + D RR+  H E
Sbjct:    86 MGFTDFPFVPRFDDESRDSRRYPSHME 112

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=IMP

GO:0080102 "3-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080103 "4-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0080104 "5-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080106 "7-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

TAIR|locus:2202038 AT1G12160 "AT1G12160" [Arabidopsis thaliana (taxid:3702)]

 Score = 89 (36.4 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query:    93 ETAGVAK-VYIASKLVAG-----YNNMLLYSMIESIHENGSVVIRIQRVIFTDIIQH 143
             + A +AK V+I+SK+VA      Y+N+ ++  I    E+GSVV R  +V+F D I H
Sbjct:   222 DIATIAKEVHISSKMVASDSYGCYDNLRIHPTIYRAREDGSVVFRNGKVVFADAIVH 278

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:2203891 FMO GS-OX3 "AT1G62560" [Arabidopsis thaliana (taxid:3702)]

 Score = 90 (36.7 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
 Identities = 31/87 (35%), Positives = 44/87 (50%)

Query:    19 RELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVL----TALSGQIYIG-------EI 67
             REL REG+ +VVFER K +    +  P+ +  P L L    + +   IY         E 
Sbjct:    27 RELRREGHSVVVFEREKQVGGLWVYTPKSDSDP-LSLDPTRSKVHSSIYESLRTNVPRES 85

Query:    68 MNFREYPFLAR-NDGTADPRRFRGHWE 93
             M  R++PFL R +D + D RR+  H E
Sbjct:    86 MGVRDFPFLPRFDDESRDARRYPNHRE 112

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP

GO:0080102 "3-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080103 "4-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0080104 "5-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080105 "6-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080106 "7-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
PLN02172	461	PLN02172, PLN02172, flavin-containing monooxygenas	2e-14
PLN02172	461	PLN02172, PLN02172, flavin-containing monooxygenas	5e-07
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	9e-05
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	5e-04
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	0.001
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	0.003
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	0.003
COG3380	331	COG3380, COG3380, Predicted NAD/FAD-dependent oxid	0.004

>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX

 Score = 68.7 bits (168), Expect = 2e-14
 Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 13/104 (12%)

Query: 2   SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVL----TA 57
           S H A+IGAG AGL A REL REG+ +VVFER K +    +  P+ E  P L L    + 
Sbjct: 10  SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDP-LSLDPTRSI 68

Query: 58  LSGQIYIG-------EIMNFREYPFLAR-NDGTADPRRFRGHWE 93
           +   +Y         E M +R++PF+ R +D + D RR+  H E
Sbjct: 69  VHSSVYESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHRE 112

Length = 461

>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 10/59 (16%)

Query: 95  AGVAK-VYIAS---------KLVAGYNNMLLYSMIESIHENGSVVIRIQRVIFTDIIQH 143
           A VAK V+IAS         KL    NN+ ++S I++ HE+GS+V +  +V++ D I H
Sbjct: 224 AKVAKEVHIASRASESDTYEKLPVPQNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVH 282

Length = 461

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 5   AALIGAGTAGLGATRELSREGYLLVVFER 33
            A+IGAG AGL A   L+R G+ + VFER
Sbjct: 542 VAVIGAGPAGLAAAYFLARAGHPVTVFER 570

Length = 1019

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 38.2 bits (90), Expect = 5e-04
 Identities = 15/29 (51%), Positives = 22/29 (75%)

Query: 6   ALIGAGTAGLGATRELSREGYLLVVFERA 34
           A++G+G AGL A  +L+R G+ + VFERA
Sbjct: 147 AVVGSGPAGLAAADQLARAGHKVTVFERA 175

Length = 471

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 4  HAALIGAGTAGLGATRELSREGYLLVVFER 33
             +IGAG AGL A  EL + GY + V E 
Sbjct: 6  SVVIIGAGPAGLTAAYELLKRGYPVTVLEA 35

Length = 479

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 35.9 bits (84), Expect = 0.003
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 4   HAALIGAGTAGLGATRELSREGYLLVVFER 33
             A+IGAG AGL A   L+R+GY + +FE 
Sbjct: 142 KVAVIGAGPAGLTAAHRLARKGYDVTIFEA 171

Length = 457

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 6  ALIGAGTAGLGATRELSREGYLLVVFERAK---GLTQTH 41
          A++G G AGL A   L++ G+ + VFE      GL  + 
Sbjct: 3  AIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASF 41

Length = 434

>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 6  ALIGAGTAGLGATRELSREGYLLVVFERAKGL 37
          A++GAG AGL A   L   G  + VFE+ +G+
Sbjct: 5  AIVGAGIAGLAAAYALREAGREVTVFEKGRGV 36

Length = 331

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.82
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.74
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.69
PRK05868	372	hypothetical protein; Validated	99.52
PRK08163	396	salicylate hydroxylase; Provisional	99.49
PRK07588	391	hypothetical protein; Provisional	99.48
COG2081	408	Predicted flavoproteins [General function predicti	99.47
PRK06475	400	salicylate hydroxylase; Provisional	99.45
PRK06753	373	hypothetical protein; Provisional	99.44
PRK07236	386	hypothetical protein; Provisional	99.44
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.37
PRK06847	375	hypothetical protein; Provisional	99.37
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.37
PRK07538	413	hypothetical protein; Provisional	99.36
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.36
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.32
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.31
PRK09126	392	hypothetical protein; Provisional	99.3
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.29
PRK07045	388	putative monooxygenase; Reviewed	99.29
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.29
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.28
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.26
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.26
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	99.25
PRK08244	493	hypothetical protein; Provisional	99.25
PRK08013	400	oxidoreductase; Provisional	99.24
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.24
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.24
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.22
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.22
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.22
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.19
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.17
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	99.17
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.16
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.13
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.12
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.12
PRK06184	502	hypothetical protein; Provisional	99.12
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.1
PRK06834	488	hypothetical protein; Provisional	99.09
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.08
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.08
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.06
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.04
PRK06126	545	hypothetical protein; Provisional	99.01
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.0
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.99
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.99
PLN02268	435	probable polyamine oxidase	98.99
PRK07208	479	hypothetical protein; Provisional	98.99
COG3349	485	Uncharacterized conserved protein [Function unknow	98.98
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.98
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.97
PRK06185	407	hypothetical protein; Provisional	98.96
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.95
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.95
PRK07233	434	hypothetical protein; Provisional	98.95
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.94
PRK08294	634	phenol 2-monooxygenase; Provisional	98.93
PRK07190	487	hypothetical protein; Provisional	98.9
PLN02576	496	protoporphyrinogen oxidase	98.9
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.88
PLN02852	491	ferredoxin-NADP+ reductase	98.88
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.86
PRK06996	398	hypothetical protein; Provisional	98.85
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.85
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.84
PRK12831	464	putative oxidoreductase; Provisional	98.82
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.82
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.81
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.81
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.8
PTZ00188	506	adrenodoxin reductase; Provisional	98.8
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.8
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.79
PLN02568	539	polyamine oxidase	98.77
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	98.75
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.75
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.74
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.74
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.74
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.72
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.72
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.71
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.7
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.69
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.69
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.69
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.69
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.68
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.68
PLN02487	569	zeta-carotene desaturase	98.68
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.68
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.67
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.67
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.66
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.66
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.65
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.65
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.64
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.64
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.64
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.63
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.63
PLN02529	738	lysine-specific histone demethylase 1	98.63
PLN02676	487	polyamine oxidase	98.63
PRK10157	428	putative oxidoreductase FixC; Provisional	98.62
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	98.62
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.61
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.6
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.6
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.6
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.59
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.59
PRK10015	429	oxidoreductase; Provisional	98.58
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.58
PRK14727	479	putative mercuric reductase; Provisional	98.57
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.57
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.56
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.56
TIGR02053	463	MerA mercuric reductase. This model represents the	98.56
PRK06116	450	glutathione reductase; Validated	98.56
PRK14694	468	putative mercuric reductase; Provisional	98.56
PLN02612	567	phytoene desaturase	98.56
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.56
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.55
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.55
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.55
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.54
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.54
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.54
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.54
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.53
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.53
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.53
PRK10262	321	thioredoxin reductase; Provisional	98.53
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.53
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.52
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.51
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.51
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.51
PRK13748	561	putative mercuric reductase; Provisional	98.5
PTZ00367	567	squalene epoxidase; Provisional	98.5
PLN02985	514	squalene monooxygenase	98.5
PRK06370	463	mercuric reductase; Validated	98.49
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.49
PRK11445	351	putative oxidoreductase; Provisional	98.49
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.49
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.47
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.46
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.46
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.43
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.42
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.41
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.41
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.41
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.41
PLN03000	881	amine oxidase	98.41
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.4
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.4
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.39
PRK13984	604	putative oxidoreductase; Provisional	98.39
PRK07121	492	hypothetical protein; Validated	98.38
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.38
PRK08274	466	tricarballylate dehydrogenase; Validated	98.38
PLN02976	1713	amine oxidase	98.37
PRK09897	534	hypothetical protein; Provisional	98.37
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.37
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.36
PTZ00058	561	glutathione reductase; Provisional	98.35
PLN02661	357	Putative thiazole synthesis	98.34
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.34
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.34
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.34
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.33
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.32
PRK08401	466	L-aspartate oxidase; Provisional	98.31
PLN02507	499	glutathione reductase	98.31
PLN02463	447	lycopene beta cyclase	98.3
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.3
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.3
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.3
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.29
PTZ00052	499	thioredoxin reductase; Provisional	98.28
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.28
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.27
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.27
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.27
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.26
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.25
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.25
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.24
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.24
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.21
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.21
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.2
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.19
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.19
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.19
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.19
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	98.19
PLN02546	558	glutathione reductase	98.18
PLN02697	529	lycopene epsilon cyclase	98.18
PRK07804	541	L-aspartate oxidase; Provisional	98.18
PRK12839	572	hypothetical protein; Provisional	98.17
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.15
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.15
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.14
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.14
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.13
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.13
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.13
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.13
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.12
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.12
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.12
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.11
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.11
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.09
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.09
PRK05257	494	malate:quinone oxidoreductase; Validated	98.09
COG0579	429	Predicted dehydrogenase [General function predicti	98.09
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.08
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.08
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.07
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.07
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.06
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.06
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.05
PRK06175	433	L-aspartate oxidase; Provisional	98.05
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.05
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.05
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.05
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.05
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.04
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.04
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.03
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.03
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.03
PLN02815	594	L-aspartate oxidase	98.02
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.01
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.0
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.99
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.98
PRK08275	554	putative oxidoreductase; Provisional	97.98
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.97
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.96
PRK07395	553	L-aspartate oxidase; Provisional	97.96
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.96
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.95
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.93
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.93
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.92
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.91
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.91
PRK08071	510	L-aspartate oxidase; Provisional	97.91
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	97.89
PLN02507	499	glutathione reductase	97.86
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.86
PRK09077	536	L-aspartate oxidase; Provisional	97.85
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	97.84
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.84
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.83
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.81
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.8
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.79
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.76
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.75
COG3573	552	Predicted oxidoreductase [General function predict	97.74
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.74
KOG2852	380	consensus Possible oxidoreductase [General functio	97.69
PRK02106	560	choline dehydrogenase; Validated	97.69
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.69
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.67
PRK07846	451	mycothione reductase; Reviewed	97.66
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.66
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	97.64
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	97.63
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.61
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.59
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.58
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.56
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	97.55
PRK07512	513	L-aspartate oxidase; Provisional	97.55
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.54
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.5
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.46
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.45
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	97.43
KOG2853	509	consensus Possible oxidoreductase [General functio	97.42
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.42
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.41
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.38
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.38
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.35
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	97.34
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.34
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.34
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	97.33
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.32
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.31
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.31
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.28
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.27
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.27
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.27
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	97.26
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.26
PRK07846	451	mycothione reductase; Reviewed	97.26
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.26
TIGR02053	463	MerA mercuric reductase. This model represents the	97.26
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.26
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.23
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.23
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	97.23
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.23
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	97.22
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.22
PRK06370	463	mercuric reductase; Validated	97.21
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.21
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.2
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.18
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.17
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.16
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.16
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.16
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	97.16
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.14
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.13
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	97.12
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.12
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	97.11
PLN02785	587	Protein HOTHEAD	97.1
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.1
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.1
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	97.09
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.09
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.09
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.08
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.07
PRK10262	321	thioredoxin reductase; Provisional	97.05
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.05
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.04
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.03
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.03
PRK12831	464	putative oxidoreductase; Provisional	97.02
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.01
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.99
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.98
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	96.98
PTZ00058	561	glutathione reductase; Provisional	96.98
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.97
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.94
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	96.93
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	96.92
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.91
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.9
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	96.9
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	96.9
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.9
PRK06116	450	glutathione reductase; Validated	96.89
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.89
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.87
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.87
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.86
PRK13748	561	putative mercuric reductase; Provisional	96.85
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.84
PRK07417	279	arogenate dehydrogenase; Reviewed	96.84
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	96.83
PTZ00153	659	lipoamide dehydrogenase; Provisional	96.83
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	96.79
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.79
PRK04148	134	hypothetical protein; Provisional	96.78
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.78
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.77
PRK14727	479	putative mercuric reductase; Provisional	96.75
PLN02546	558	glutathione reductase	96.74
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	96.73
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.72
PRK14694	468	putative mercuric reductase; Provisional	96.71
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.71
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.7
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	96.7
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.69
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.68
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.68
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	96.67
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.66
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.66
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.64
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.64
PRK11730	715	fadB multifunctional fatty acid oxidation complex	96.62
PRK06223	307	malate dehydrogenase; Reviewed	96.62
PTZ00052	499	thioredoxin reductase; Provisional	96.62
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.62
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	96.61
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.6
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	96.59
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	96.58
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	96.57
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.56
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.56
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.53
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	96.5
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	96.5
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	96.49
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	96.48
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.47
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	96.46
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	96.45
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.44
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	96.43
PRK08017	256	oxidoreductase; Provisional	96.42
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.4
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.4
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.39
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	96.38
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.37
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.36
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.36
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	96.36
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.34
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	96.33
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	96.33
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.32
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	96.29
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.29
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.29
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.25
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.22
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	96.21
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.21
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.2
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	96.2
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.19
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.17
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	96.12
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.12
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.1
PRK12480	330	D-lactate dehydrogenase; Provisional	96.1
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.1
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.08
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	96.07
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.06
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	96.05
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.05
PRK06545	359	prephenate dehydrogenase; Validated	96.01
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.0
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.0
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	95.97
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	95.97
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	95.97
PLN02256	304	arogenate dehydrogenase	95.96
PRK09496	453	trkA potassium transporter peripheral membrane com	95.93
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	95.93
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	95.92
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	95.9
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	95.9
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.87
PLN02494	477	adenosylhomocysteinase	95.86
PRK12548	289	shikimate 5-dehydrogenase; Provisional	95.84
PRK05479	330	ketol-acid reductoisomerase; Provisional	95.81
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	95.8
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.8
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	95.8
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.78
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	95.74
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	95.74
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.73
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.7
PTZ00117	319	malate dehydrogenase; Provisional	95.7
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.69
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.68
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	95.67
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	95.65
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.65
PRK15059	292	tartronate semialdehyde reductase; Provisional	95.64
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	95.64
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	95.63
PRK05993	277	short chain dehydrogenase; Provisional	95.57
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	95.55
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.54
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.53
PRK09496	453	trkA potassium transporter peripheral membrane com	95.51
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.5
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.49
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	95.49
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	95.48
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	95.47
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.46
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.45
PRK08507	275	prephenate dehydrogenase; Validated	95.44
PRK08655	437	prephenate dehydrogenase; Provisional	95.42
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	95.4
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	95.39
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	95.36
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.36
PLN02695	370	GDP-D-mannose-3',5'-epimerase	95.35

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.82  E-value=1.7e-19  Score=139.29  Aligned_cols=76  Identities=42%  Similarity=0.653  Sum_probs=58.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeecCCCccCccCCcc---ccccccc-------cceeeeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVLT---ALSGQIY-------IGEIMNFR   71 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~~~~~~~~~g~~~---~~~~~~~-------~~~~~~~~   71 (143)
                      .++|+|||||++||++|..|++.|++++||||++.+||+|.++++...+++++.+   .+++++|       |++.|.|+
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~   89 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR   89 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence            4799999999999999999999999999999999999999998765434443321   1334444       66677777


Q ss_pred             ccccCC
Q 038409           72 EYPFLA   77 (143)
Q Consensus        72 ~~~~~~   77 (143)
                      |+|+..
T Consensus        90 dfp~~~   95 (461)
T PLN02172         90 DFPFVP   95 (461)
T ss_pred             CCCCCc
Confidence            776643

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.74  E-value=4e-18  Score=130.57  Aligned_cols=127  Identities=31%  Similarity=0.457  Sum_probs=89.5

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeecCCCccCccCCccccccccc-------cceeeeeecc
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVLTALSGQIY-------IGEIMNFREY   73 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~   73 (143)
                      |.++|+|||||+|||++|++|.+.|+++++|||.+.+||+|.++++...        .++++|       |+++|.|+|+
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~--------~~ss~Y~~l~tn~pKe~~~~~df   76 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEV--------VHSSVYKSLRTNLPKEMMGYSDF   76 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccc--------cccchhhhhhccCChhhhcCCCC
Confidence            3689999999999999999999999999999999999999999977641        233333       8999999999


Q ss_pred             ccCCCCCCCCCCCcCCCCceeeceEEEEEEeeeccCCCCeEEcCceEEEeec--c--eEEEccCc----EEEeeeEe
Q 038409           74 PFLARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHEN--G--SVVIRIQR----VIFTDIIQ  142 (143)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~--~--~v~~~dG~----~~~aD~vI  142 (143)
                      ||+..     ....||.+.+...+.+.+..+.  .....|+++.++..+.+.  |  +|.+.+..    +..+|.|+
T Consensus        77 pf~~~-----~~~~~p~~~e~~~YL~~yA~~F--~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~Vv  146 (448)
T KOG1399|consen   77 PFPER-----DPRYFPSHREVLEYLRDYAKHF--DLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVV  146 (448)
T ss_pred             CCccc-----CcccCCCHHHHHHHHHHHHHhc--ChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEE
Confidence            99876     3455676655322110011111  122457778777777532  4  57776653    55678775

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.69  E-value=1.5e-17  Score=130.40  Aligned_cols=127  Identities=23%  Similarity=0.312  Sum_probs=81.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeecCCCccCccCCccccccccc---cceeeeeeccccCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVLTALSGQIY---IGEIMNFREYPFLAR   78 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~   78 (143)
                      .|+|+|||||++||++|..|.+.|+++++|||++.+||+|.+.++.......+    ..++.   ++++|.|+|+||+..
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~----y~sl~~n~sk~~~~fsdfp~p~~   76 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSV----YDSLHTNTSKEMMAFSDFPFPED   76 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGG----STT-B-SS-GGGSCCTTS-HCCC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCcccc----ccceEEeeCchHhcCCCcCCCCC
Confidence            37999999999999999999999999999999999999999876542111111    11111   788999999999876


Q ss_pred             CCCCCCCCcCCCCceeeceEEEEEEeeec--cCCCCeEEcCceEEEeec------c--eEEEcc-Cc--EEEeeeEe
Q 038409           79 NDGTADPRRFRGHWETAGVAKVYIASKLV--AGYNNMLLYSMIESIHEN------G--SVVIRI-QR--VIFTDIIQ  142 (143)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~v~~~~~~------~--~v~~~d-G~--~~~aD~vI  142 (143)
                            .+.||.+.+..+    |+.+...  .....|+++++|++++..      +  .|++.+ |+  +..+|.||
T Consensus        77 ------~p~f~~~~~v~~----Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~Vv  143 (531)
T PF00743_consen   77 ------YPDFPSHSEVLE----YLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVV  143 (531)
T ss_dssp             ------CSSSEBHHHHHH----HHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEE
T ss_pred             ------CCCCCCHHHHHH----HHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEE
Confidence                  667876655322    1111111  223468888888888632      2  366654 43  34578776

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK05868 hypothetical protein; Validated

Probab=99.52  E-value=8.7e-14  Score=105.20  Aligned_cols=133  Identities=18%  Similarity=0.107  Sum_probs=74.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC---ceeeeecCCCc--cCccCCccccccccccceeeeeeccc--
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL---TQTHLAMPQVE--LQPGLVLTALSGQIYIGEIMNFREYP--   74 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~---Gg~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~--   74 (143)
                      |++|+|||||++|+++|+.|++.|++|+||||++..   |..+...++..  ++.+|+.+.+.....+...+.+.+..  
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~   80 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGN   80 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCC
Confidence            479999999999999999999999999999998773   33333344331  45667653332221111111121100  


Q ss_pred             -cCCCCCCCCCCCcCCCCceeeceEEEEEEeeec---------cCCCCeEEcCceEEEeecc---eEEEccCcEEEeeeE
Q 038409           75 -FLARNDGTADPRRFRGHWETAGVAKVYIASKLV---------AGYNNMLLYSMIESIHENG---SVVIRIQRVIFTDII  141 (143)
Q Consensus        75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~v~~~~~~~---~v~~~dG~~~~aD~v  141 (143)
                       +...  .......+....      ..+..+|..         .....++++++++++++++   .|+|+||+++++|+|
T Consensus        81 ~~~~~--~~~~~~~~~~~~------~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlv  152 (372)
T PRK05868         81 ELFRD--TESTPTGGPVNS------PDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLV  152 (372)
T ss_pred             EEeec--ccccccCCCCCC------ceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEE
Confidence             0000  000000000000      001111110         1224577888899987543   578999999999999


Q ss_pred             e
Q 038409          142 Q  142 (143)
Q Consensus       142 I  142 (143)
                      |
T Consensus       153 I  153 (372)
T PRK05868        153 I  153 (372)
T ss_pred             E
Confidence            8

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.49  E-value=1.3e-13  Score=104.62  Aligned_cols=135  Identities=15%  Similarity=0.108  Sum_probs=73.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC---ceeeeecCCCc--cCccCCccccccccccceeeeeeccccC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL---TQTHLAMPQVE--LQPGLVLTALSGQIYIGEIMNFREYPFL   76 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~---Gg~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~   76 (143)
                      .++|+|||||++|+++|+.|++.|++|+||||++..   |..+...++..  ++.+|+.+.+.....+...+.+.+....
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~   83 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA   83 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence            458999999999999999999999999999998774   33333344432  4556664333222211111111111000


Q ss_pred             CCCCCCCCCCcCCCCce-eeceE-EEEEEeeec-----------cCCCCeEEcCceEEEeecc---eEEEccCcEEEeee
Q 038409           77 ARNDGTADPRRFRGHWE-TAGVA-KVYIASKLV-----------AGYNNMLLYSMIESIHENG---SVVIRIQRVIFTDI  140 (143)
Q Consensus        77 ~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~-----------~~~~~v~~~~~v~~~~~~~---~v~~~dG~~~~aD~  140 (143)
                      ..      ...++.... ..... +....++..           .....+++++++++++.++   .+++.||+++++|+
T Consensus        84 ~~------~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~  157 (396)
T PRK08163         84 EE------VVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDA  157 (396)
T ss_pred             CE------EEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCE
Confidence            00      000000000 00000 112222211           1124577788888886433   57889999999999


Q ss_pred             Ee
Q 038409          141 IQ  142 (143)
Q Consensus       141 vI  142 (143)
                      ||
T Consensus       158 vV  159 (396)
T PRK08163        158 LI  159 (396)
T ss_pred             EE
Confidence            98

>PRK07588 hypothetical protein; Provisional

Probab=99.48  E-value=1.9e-13  Score=103.70  Aligned_cols=133  Identities=17%  Similarity=0.013  Sum_probs=72.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC---ceeeeecCCC--ccCccCCccccccccccceeeeeeccccCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL---TQTHLAMPQV--ELQPGLVLTALSGQIYIGEIMNFREYPFLA   77 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~---Gg~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   77 (143)
                      ++|+|||||++|+++|+.|++.|++|+||||.+..   |..+...++.  .++.+|+.+.+....++...+.+.+..   
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~---   77 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPT---   77 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCC---
Confidence            58999999999999999999999999999998763   3334333333  134556543322222211111111100   


Q ss_pred             CCCCCCCCCcCCCCceeeceE-EEEEEeeec---------cCCCCeEEcCceEEEeecc---eEEEccCcEEEeeeEe
Q 038409           78 RNDGTADPRRFRGHWETAGVA-KVYIASKLV---------AGYNNMLLYSMIESIHENG---SVVIRIQRVIFTDIIQ  142 (143)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~v~~~~~v~~~~~~~---~v~~~dG~~~~aD~vI  142 (143)
                          +.....++......... ..+..++..         .....+++++++++++.++   .|+|+||+++++|+||
T Consensus        78 ----g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vI  151 (391)
T PRK07588         78 ----GRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVI  151 (391)
T ss_pred             ----CCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEE
Confidence                00000000000000000 001111110         1224688888999987543   5789999999999998

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.47  E-value=1.2e-14  Score=108.43  Aligned_cols=140  Identities=13%  Similarity=0.087  Sum_probs=86.7

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc--------eeeeecCCCccCcc--CCc---cccccccc---c
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT--------QTHLAMPQVELQPG--LVL---TALSGQIY---I   64 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G--------g~~~~~~~~~~~~~--g~~---~~~~~~~~---~   64 (143)
                      |..+|+|||||++||+||..+.+.|++|+|||+.+.+|        |.|++++....+.+  ..+   ..+.+.+.   +
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~   81 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP   81 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence            35689999999999999999999999999999999965        66776654321111  000   11222111   2


Q ss_pred             ceeeeeec-cccCCCCCCCCCCCcCCCCceeeceEEEEEEeeeccCCCCeEEcCceEEEeecc---eEEEccCcEEEeee
Q 038409           65 GEIMNFRE-YPFLARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHENG---SVVIRIQRVIFTDI  140 (143)
Q Consensus        65 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~---~v~~~dG~~~~aD~  140 (143)
                      .++..+.. +....  ..+...+.||....++.+.+ .+..++......++++++|.++..++   .+.+.+|+++.||.
T Consensus        82 ~d~i~~~e~~Gi~~--~e~~~Gr~Fp~sdkA~~Iv~-~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~  158 (408)
T COG2081          82 EDFIDWVEGLGIAL--KEEDLGRMFPDSDKASPIVD-ALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDS  158 (408)
T ss_pred             HHHHHHHHhcCCee--EEccCceecCCccchHHHHH-HHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccE
Confidence            22222210 00000  03334677887555433222 12223334567788899999998663   58888999999999


Q ss_pred             EeC
Q 038409          141 IQH  143 (143)
Q Consensus       141 vI~  143 (143)
                      +|.
T Consensus       159 lil  161 (408)
T COG2081         159 LIL  161 (408)
T ss_pred             EEE
Confidence            873

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.45  E-value=3.5e-13  Score=102.68  Aligned_cols=58  Identities=28%  Similarity=0.365  Sum_probs=44.0

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC---CceeeeecCCCc--cCccCCcccc
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG---LTQTHLAMPQVE--LQPGLVLTAL   58 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~---~Gg~~~~~~~~~--~~~~g~~~~~   58 (143)
                      |.++|+|||||++|+++|++|++.|++|+||||.+.   .|..+...++..  +..+|+.+.+
T Consensus         1 ~~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l   63 (400)
T PRK06475          1 TRGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRL   63 (400)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHH
Confidence            568999999999999999999999999999999876   343344444432  4556665433

>PRK06753 hypothetical protein; Provisional

Probab=99.44  E-value=1.4e-13  Score=103.71  Aligned_cols=134  Identities=18%  Similarity=0.129  Sum_probs=71.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC---ceeeeecCCCc--cCccCCccccccccccceeeeeeccc---
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL---TQTHLAMPQVE--LQPGLVLTALSGQIYIGEIMNFREYP---   74 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~---Gg~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~---   74 (143)
                      ++|+|||||++|+++|+.|++.|++|+||||++..   |..+...++..  ++.+|+.+.+.....+...+.+.+..   
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~   80 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTL   80 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCE
Confidence            58999999999999999999999999999998763   33333333331  34455532221111111111111100   


Q ss_pred             cCCCCCCCCCCCcCCCCceeeceEEEEEEeeeccCCCCeEEcCceEEEeecc---eEEEccCcEEEeeeEe
Q 038409           75 FLARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHENG---SVVIRIQRVIFTDIIQ  142 (143)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~---~v~~~dG~~~~aD~vI  142 (143)
                      +.... .......+..++..  +.+ .+...  .....+++++++++++.++   .|+|.||+++++|+||
T Consensus        81 ~~~~~-~~~~~~~~~i~R~~--l~~-~L~~~--~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vi  145 (373)
T PRK06753         81 LNKVK-LKSNTLNVTLHRQT--LID-IIKSY--VKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCI  145 (373)
T ss_pred             Eeecc-cccCCccccccHHH--HHH-HHHHh--CCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEE
Confidence            00000 00000000011100  000 01011  1223588888999986543   5789999999999998

>PRK07236 hypothetical protein; Provisional

Probab=99.44  E-value=2.2e-13  Score=103.35  Aligned_cols=133  Identities=16%  Similarity=0.109  Sum_probs=71.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC----CceeeeecCCCc--cCccCCccccccccccceeeeeecccc
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG----LTQTHLAMPQVE--LQPGLVLTALSGQIYIGEIMNFREYPF   75 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~----~Gg~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~   75 (143)
                      .++|+|||||++|+++|+.|++.|++|+||||++.    .|+.....++..  ++.+|+.+.. ...++...+.+.+.. 
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~~~~~~~~~~~~~-   83 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA-DIGVPSRERIYLDRD-   83 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc-ccccCccceEEEeCC-
Confidence            46899999999999999999999999999999864    343333333331  3445554221 111111111111100 


Q ss_pred             CCCCCCCCCCCcCCCCceeeceEEEEEEeeeccCCCCeEEcCceEEEeecc---eEEEccCcEEEeeeEe
Q 038409           76 LARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHENG---SVVIRIQRVIFTDIIQ  142 (143)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~---~v~~~dG~~~~aD~vI  142 (143)
                      ... ............+.  .+.+ .+...  .....+++++++++++.++   .|+|+||+++++|+||
T Consensus        84 g~~-~~~~~~~~~~~~~~--~l~~-~L~~~--~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI  147 (386)
T PRK07236         84 GRV-VQRRPMPQTQTSWN--VLYR-ALRAA--FPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLV  147 (386)
T ss_pred             CCE-eeccCCCccccCHH--HHHH-HHHHh--CCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEE
Confidence            000 00000000000000  0000 00011  1224588888899987543   5789999999999998

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.37  E-value=3.1e-12  Score=97.83  Aligned_cols=53  Identities=19%  Similarity=0.172  Sum_probs=41.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCCC---ceeeeecCCCc--cCccCCc
Q 038409            3 CHAALIGAGTAGLGATRELSREG-YLLVVFERAKGL---TQTHLAMPQVE--LQPGLVL   55 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~~---Gg~~~~~~~~~--~~~~g~~   55 (143)
                      ++|+|||||++||++|++|++.| ++|+||||++.+   |..+...++..  ++.+|+.
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~   59 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLG   59 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCCh
Confidence            58999999999999999999998 599999998773   44444455442  4556654

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK06847 hypothetical protein; Provisional

Probab=99.37  E-value=1.9e-12  Score=97.64  Aligned_cols=35  Identities=26%  Similarity=0.385  Sum_probs=32.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||||++|+++|+.|++.|++|+||||++.
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~   38 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE   38 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            46899999999999999999999999999999876

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.37  E-value=5.5e-12  Score=95.85  Aligned_cols=128  Identities=19%  Similarity=0.223  Sum_probs=73.9

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC-C---CceeeeecCCC--ccCccCCcccccc-ccccceeeeeecc
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAK-G---LTQTHLAMPQV--ELQPGLVLTALSG-QIYIGEIMNFREY   73 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~-~---~Gg~~~~~~~~--~~~~~g~~~~~~~-~~~~~~~~~~~~~   73 (143)
                      +.++|+|||||++|+++|+.|++.|++|+|+||++ .   .|-.....++.  .+..+|+.+.+.. ...+...+.+.+-
T Consensus         1 ~~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~   80 (387)
T COG0654           1 KMLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDG   80 (387)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecC
Confidence            46799999999999999999999999999999983 2   33222333333  1456676222222 1212222222111


Q ss_pred             -----ccCCCCCCCCCCCcCCCCceeeceEEEEEEeeec-----------cCCCCeEEcCceEEEeecc---eEEEc-cC
Q 038409           74 -----PFLARNDGTADPRRFRGHWETAGVAKVYIASKLV-----------AGYNNMLLYSMIESIHENG---SVVIR-IQ  133 (143)
Q Consensus        74 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~v~~~~~~~---~v~~~-dG  133 (143)
                           .|...        .....    .  ..+...+..           .+...+.++.+|+.++.++   .+++. ||
T Consensus        81 ~~~~~~~~~~--------~~~~~----~--~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG  146 (387)
T COG0654          81 GRRLLIFDAA--------ELGRG----A--LGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDG  146 (387)
T ss_pred             CceeEEeccc--------ccCCC----c--ceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCC
Confidence                 01110        00000    0  111111111           1224677788899987554   57788 99


Q ss_pred             cEEEeeeEe
Q 038409          134 RVIFTDIIQ  142 (143)
Q Consensus       134 ~~~~aD~vI  142 (143)
                      ++++||+||
T Consensus       147 ~~~~a~llV  155 (387)
T COG0654         147 ETLDADLLV  155 (387)
T ss_pred             cEEecCEEE
Confidence            999999997

>PRK07538 hypothetical protein; Provisional

Probab=99.36  E-value=5.2e-12  Score=96.63  Aligned_cols=54  Identities=28%  Similarity=0.330  Sum_probs=40.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC---ceeeeecCCCc--cCccCCcc
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL---TQTHLAMPQVE--LQPGLVLT   56 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~---Gg~~~~~~~~~--~~~~g~~~   56 (143)
                      |+|+|||||++|+++|+.|++.|++|+||||++..   |..+...++..  +..+|+.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~   59 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLD   59 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHH
Confidence            58999999999999999999999999999998763   33333333331  34556543

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.36  E-value=2.2e-12  Score=99.59  Aligned_cols=65  Identities=28%  Similarity=0.369  Sum_probs=51.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeeCCCCceeeeecCCCccCccCCccccccccccceeeeeeccccC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYL-LVVFERAKGLTQTHLAMPQVELQPGLVLTALSGQIYIGEIMNFREYPFL   76 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~-v~v~Er~~~~Gg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   76 (143)
                      .++|+|||||++||++|.+|++.|.+ ++||||++.+||.|.+....     ++.  +.+   +.+.+.|+.+||.
T Consensus         8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~-----~l~--~~~---p~~~~~~~~~p~~   73 (443)
T COG2072           8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYP-----GLR--LDS---PKWLLGFPFLPFR   73 (443)
T ss_pred             cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCC-----ceE--ECC---chheeccCCCccC
Confidence            35899999999999999999999998 99999999999999865211     111  122   6667777777775

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.32  E-value=1.9e-11  Score=93.36  Aligned_cols=56  Identities=18%  Similarity=0.192  Sum_probs=41.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC-----ceeeeecCCCc--cCccCCccc
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL-----TQTHLAMPQVE--LQPGLVLTA   57 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~-----Gg~~~~~~~~~--~~~~g~~~~   57 (143)
                      .++|+|||||++|+++|+.|++.|++|+||||++..     |..+...++..  ++.+|+.+.
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~   80 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEK   80 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhh
Confidence            358999999999999999999999999999998763     33333333331  455676543

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.31  E-value=2.6e-11  Score=91.49  Aligned_cols=34  Identities=24%  Similarity=0.472  Sum_probs=31.9

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +|+|||||++|+++|+.|++.|++|+||||.+..
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~   34 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE   34 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence            5899999999999999999999999999998763

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK09126 hypothetical protein; Provisional

Probab=99.30  E-value=7.8e-12  Score=94.81  Aligned_cols=36  Identities=33%  Similarity=0.534  Sum_probs=33.2

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |..+|+|||||++|+++|+.|++.|++|+||||.+.
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   37 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL   37 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            446899999999999999999999999999999865

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.29  E-value=3.1e-11  Score=91.54  Aligned_cols=33  Identities=21%  Similarity=0.451  Sum_probs=31.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      .+|+|||||++|+++|++|++.|++|+|||+.+
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            489999999999999999999999999999875

>PRK07045 putative monooxygenase; Reviewed

Probab=99.29  E-value=2e-11  Score=92.58  Aligned_cols=35  Identities=29%  Similarity=0.378  Sum_probs=32.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .+|+|||||++|+++|+.|++.|++|+||||.+..
T Consensus         6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            48999999999999999999999999999998763

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.29  E-value=1.5e-11  Score=93.60  Aligned_cols=36  Identities=36%  Similarity=0.509  Sum_probs=34.1

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |.++|+|||||++|+++|+.|++.|++|+||||++.
T Consensus         1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            678999999999999999999999999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.28  E-value=5.3e-13  Score=92.53  Aligned_cols=38  Identities=37%  Similarity=0.471  Sum_probs=32.3

Q ss_pred             EEEcCCHHHHHHHHHHHHCCCe-EEEEeeCCCCceeeee
Q 038409            6 ALIGAGTAGLGATRELSREGYL-LVVFERAKGLTQTHLA   43 (143)
Q Consensus         6 ~IIGaG~~Gl~~A~~L~~~g~~-v~v~Er~~~~Gg~~~~   43 (143)
                      +|||||++||++|..|++.|.+ ++|+||.+.+||.|..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~   39 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR   39 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence            6999999999999999999999 9999999999999984

...

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.26  E-value=3.8e-11  Score=91.29  Aligned_cols=36  Identities=42%  Similarity=0.481  Sum_probs=33.9

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |..+|+|||||++|+++|+.|++.|++|+|+||++.
T Consensus         1 ~~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            678999999999999999999999999999999874

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.26  E-value=8e-13  Score=100.92  Aligned_cols=138  Identities=18%  Similarity=0.172  Sum_probs=68.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc--------eeeeecC-CCccCcc----CCc-cccccccc---cc
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT--------QTHLAMP-QVELQPG----LVL-TALSGQIY---IG   65 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G--------g~~~~~~-~~~~~~~----g~~-~~~~~~~~---~~   65 (143)
                      .+|+|||||++||+||+.|++.|.+|+|+||++.+|        |.+++++ +......    +-. ..+...+.   +.
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~   80 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE   80 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence            379999999999999999999999999999998865        7788776 3321111    000 01111100   22


Q ss_pred             eeeee-eccccCCCCCCCCCCCcCCCCceeeceEEEEEEeeeccCCCCeEEcCceEEEeec--c--eEEEccCcEEEeee
Q 038409           66 EIMNF-REYPFLARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHEN--G--SVVIRIQRVIFTDI  140 (143)
Q Consensus        66 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~--~--~v~~~dG~~~~aD~  140 (143)
                      ++..| .....+..  ...+.+.||...++..+.+++ ...+......++++.+|.++..+  +  .|.++++.++.||.
T Consensus        81 d~~~ff~~~Gv~~~--~~~~gr~fP~s~~a~~Vv~~L-~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~  157 (409)
T PF03486_consen   81 DLIAFFEELGVPTK--IEEDGRVFPKSDKASSVVDAL-LEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA  157 (409)
T ss_dssp             HHHHHHHHTT--EE--E-STTEEEETT--HHHHHHHH-HHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred             HHHHHHHhcCCeEE--EcCCCEECCCCCcHHHHHHHH-HHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence            22211 11100000  122356677665432221111 11111234578888889998642  2  47777888999999


Q ss_pred             EeC
Q 038409          141 IQH  143 (143)
Q Consensus       141 vI~  143 (143)
                      ||.
T Consensus       158 vIL  160 (409)
T PF03486_consen  158 VIL  160 (409)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            984

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=99.25  E-value=3.2e-11  Score=96.70  Aligned_cols=34  Identities=24%  Similarity=0.453  Sum_probs=32.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      .++|+|||||++||++|++|++.|++|+||||.+
T Consensus        81 ~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         81 KSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            3689999999999999999999999999999975

>PRK08244 hypothetical protein; Provisional

Probab=99.25  E-value=1e-11  Score=97.08  Aligned_cols=57  Identities=28%  Similarity=0.342  Sum_probs=42.3

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC---ceeeeecCCC--ccCccCCccc
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL---TQTHLAMPQV--ELQPGLVLTA   57 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~---Gg~~~~~~~~--~~~~~g~~~~   57 (143)
                      |..+|+|||||++|+++|+.|++.|++|+|+||++..   +......++.  .++.+|+.+.
T Consensus         1 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~   62 (493)
T PRK08244          1 MKYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLER   62 (493)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHH
Confidence            5679999999999999999999999999999998763   2222223332  1456676543

>PRK08013 oxidoreductase; Provisional

Probab=99.24  E-value=9.5e-11  Score=89.41  Aligned_cols=34  Identities=24%  Similarity=0.402  Sum_probs=32.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||++|+++|+.|++.|++|+|+||.+.
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            5899999999999999999999999999999876

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.24  E-value=7.2e-11  Score=89.80  Aligned_cols=35  Identities=23%  Similarity=0.460  Sum_probs=31.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREG--YLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~   36 (143)
                      +.+|+|||||++|+++|+.|++.|  ++|+|+||++.
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            368999999999999999999995  99999999865

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.24  E-value=3.5e-11  Score=91.78  Aligned_cols=35  Identities=20%  Similarity=0.401  Sum_probs=32.9

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |..+|+|||||++|+++|+.|++.|++|+|+|+.+
T Consensus         1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          1 MRADLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             CCccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            55789999999999999999999999999999986

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.22  E-value=9.9e-11  Score=88.48  Aligned_cols=33  Identities=27%  Similarity=0.457  Sum_probs=31.2

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCC
Q 038409            4 HAALIGAGTAGLGATRELSREG-YLLVVFERAKG   36 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~   36 (143)
                      +|+|||||++|+++|+.|++.| ++|+||||.+.
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~   34 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP   34 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            5899999999999999999999 99999999865

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.22  E-value=1.7e-11  Score=71.10  Aligned_cols=36  Identities=39%  Similarity=0.638  Sum_probs=33.2

Q ss_pred             EEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            7 LIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         7 IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      |||||++||++|..|++.|++|+|||+.+.+||.+.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~   36 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRAR   36 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGC
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCccee
Confidence            899999999999999999999999999999998765

...

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.22  E-value=9e-11  Score=88.79  Aligned_cols=34  Identities=18%  Similarity=0.446  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +.+|+|||||++|+++|++|++.|++|+|+|+.+
T Consensus         1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~   34 (374)
T PRK06617          1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKS   34 (374)
T ss_pred             CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence            3689999999999999999999999999999863

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.19  E-value=1.5e-10  Score=88.39  Aligned_cols=32  Identities=28%  Similarity=0.471  Sum_probs=30.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      .+|+|||||++|+++|++|++.|++|+|+|+.
T Consensus         5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            48999999999999999999999999999996

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.17  E-value=3e-10  Score=86.05  Aligned_cols=37  Identities=16%  Similarity=0.323  Sum_probs=33.9

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      |..+|+|||||++|+++|+.|++.|++|+|+||.+..
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP   40 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence            4568999999999999999999999999999998763

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=99.17  E-value=2.6e-11  Score=91.00  Aligned_cols=37  Identities=27%  Similarity=0.449  Sum_probs=33.9

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      ++.+|+|||||++|+++|.+|.++|++|+|||++..+
T Consensus         1 ~~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    1 KEPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP   37 (420)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            3579999999999999999999999999999997663

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.16  E-value=4.8e-11  Score=88.56  Aligned_cols=34  Identities=38%  Similarity=0.619  Sum_probs=30.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||++|+++|+.|++.|++|+||||++.
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~   35 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD   35 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence            4799999999999999999999999999999876

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.13  E-value=2.8e-10  Score=89.96  Aligned_cols=36  Identities=31%  Similarity=0.475  Sum_probs=33.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      ..+|+|||||++|+++|+.|++.|++|+||||.+..
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~   45 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL   45 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            468999999999999999999999999999998763

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.12  E-value=6.9e-10  Score=84.33  Aligned_cols=34  Identities=21%  Similarity=0.392  Sum_probs=32.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||++|+++|+.|++.|++|+|+||.+.
T Consensus         7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~   40 (392)
T PRK08773          7 RDAVIVGGGVVGAACALALADAGLSVALVEGREP   40 (392)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence            6899999999999999999999999999999764

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.12  E-value=2.2e-10  Score=86.87  Aligned_cols=33  Identities=27%  Similarity=0.398  Sum_probs=31.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC---CCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSRE---GYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~---g~~v~v~Er~   34 (143)
                      ..+|+|||||++|+++|+.|++.   |++|+||||.
T Consensus         3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            46899999999999999999998   9999999995

>PRK06184 hypothetical protein; Provisional

Probab=99.12  E-value=8.3e-11  Score=92.17  Aligned_cols=35  Identities=31%  Similarity=0.501  Sum_probs=32.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .+|+|||||++|+++|+.|++.|++|+|+||++..
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~   38 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP   38 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            58999999999999999999999999999998763

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.10  E-value=1.3e-10  Score=90.75  Aligned_cols=41  Identities=32%  Similarity=0.456  Sum_probs=38.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .++|+|||||++||+||..|++.|++|+|+|.++.+||...
T Consensus        15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~   55 (501)
T KOG0029|consen   15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIY   55 (501)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeE
Confidence            46899999999999999999999999999999999998865

>PRK06834 hypothetical protein; Provisional

Probab=99.09  E-value=1.7e-10  Score=90.22  Aligned_cols=34  Identities=26%  Similarity=0.399  Sum_probs=32.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||++|+++|+.|++.|++|+|+||.+.
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~   37 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN   37 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            5899999999999999999999999999999865

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.08  E-value=2e-10  Score=87.09  Aligned_cols=34  Identities=32%  Similarity=0.476  Sum_probs=31.8

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +|+|||||++|+++|+.|++.|++|+|+||.+..
T Consensus         9 dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~   42 (388)
T PRK07494          9 DIAVIGGGPAGLAAAIALARAGASVALVAPEPPY   42 (388)
T ss_pred             CEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            7999999999999999999999999999998653

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.08  E-value=9.5e-10  Score=83.29  Aligned_cols=36  Identities=22%  Similarity=0.367  Sum_probs=33.1

Q ss_pred             cEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCce
Q 038409            4 HAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLTQ   39 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~Gg   39 (143)
                      +|+|||||++|+++|..|++.  |++|.++|+++..++
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~   38 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG   38 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence            589999999999999999987  999999999887765

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.06  E-value=2.6e-10  Score=87.82  Aligned_cols=40  Identities=28%  Similarity=0.417  Sum_probs=37.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREG--YLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~~Gg~~~   42 (143)
                      |+|+|||||++||+||..|++.|  ++|+|||+++.+||.+.
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~   42 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQ   42 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEE
Confidence            58999999999999999999987  89999999999998754

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.04  E-value=1.8e-09  Score=81.90  Aligned_cols=35  Identities=26%  Similarity=0.494  Sum_probs=32.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ..+|+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~   39 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP   39 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence            35899999999999999999999999999999753

>PRK06126 hypothetical protein; Provisional

Probab=99.01  E-value=1.6e-09  Score=85.69  Aligned_cols=34  Identities=29%  Similarity=0.560  Sum_probs=32.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||++|+++|+.|++.|++|+||||.+.
T Consensus         8 ~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          8 TPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            5899999999999999999999999999999865

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.00  E-value=2.7e-09  Score=84.55  Aligned_cols=36  Identities=25%  Similarity=0.511  Sum_probs=33.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      ..+|+|||||++|+++|+.|++.|++|+|+||++..
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~   58 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL   58 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            358999999999999999999999999999998764

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.99  E-value=7.6e-10  Score=80.75  Aligned_cols=39  Identities=26%  Similarity=0.296  Sum_probs=34.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .+|+|||||++|+++|..|++.|++|+|+|+.+ .||.|.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~   39 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLT   39 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCccee
Confidence            479999999999999999999999999999875 676655

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.99  E-value=4.4e-09  Score=81.23  Aligned_cols=32  Identities=16%  Similarity=0.462  Sum_probs=30.0

Q ss_pred             cEEEEcCCHHHHHHHHHHHH----CCCeEEEEeeCC
Q 038409            4 HAALIGAGTAGLGATRELSR----EGYLLVVFERAK   35 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~----~g~~v~v~Er~~   35 (143)
                      +|+|||||++|+++|++|++    .|++|+|+|+++
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~   37 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD   37 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence            79999999999999999998    899999999953

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PLN02268 probable polyamine oxidase

Probab=98.99  E-value=7.3e-10  Score=85.31  Aligned_cols=40  Identities=23%  Similarity=0.387  Sum_probs=37.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++||+||..|++.|++|+|+|+++.+||...
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~   40 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVH   40 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceee
Confidence            4899999999999999999999999999999999998764

>PRK07208 hypothetical protein; Provisional

Probab=98.99  E-value=7.9e-10  Score=86.06  Aligned_cols=41  Identities=34%  Similarity=0.459  Sum_probs=38.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .++|+|||||++||++|..|+++|++|+|+|+++.+||.+.
T Consensus         4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~   44 (479)
T PRK07208          4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISR   44 (479)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence            46899999999999999999999999999999999998764

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.98  E-value=7e-10  Score=85.52  Aligned_cols=40  Identities=35%  Similarity=0.512  Sum_probs=37.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      |||+|+|||++||++|..|+++|++|+|||+++.+||...
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~   40 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVA   40 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceee
Confidence            6899999999999999999999999999999999996643

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.98  E-value=9.6e-10  Score=86.00  Aligned_cols=40  Identities=30%  Similarity=0.459  Sum_probs=37.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      .++|+|||||++||++|..|+++|++|+||||+..+||..
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a   42 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRA   42 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcce
Confidence            4799999999999999999999999999999999999753

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.97  E-value=7.6e-10  Score=77.18  Aligned_cols=40  Identities=28%  Similarity=0.460  Sum_probs=36.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc-eeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT-QTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G-g~~~   42 (143)
                      .+|+|||||++||+||+.|+++|.+|+||||+-.+| |.|.
T Consensus        31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~   71 (262)
T COG1635          31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWG   71 (262)
T ss_pred             ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccc
Confidence            479999999999999999999999999999998876 6665

>PRK06185 hypothetical protein; Provisional

Probab=98.96  E-value=3.7e-09  Score=80.62  Aligned_cols=35  Identities=26%  Similarity=0.447  Sum_probs=32.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ..+|+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            46899999999999999999999999999999764

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.95  E-value=1.2e-09  Score=84.84  Aligned_cols=41  Identities=22%  Similarity=0.261  Sum_probs=36.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC------CCeEEEEeeCCCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSRE------GYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~------g~~v~v~Er~~~~Gg~~~   42 (143)
                      |++|+|||||++||++|..|++.      |.+|+|||+++.+||...
T Consensus         1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~   47 (463)
T PRK12416          1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH   47 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence            47899999999999999999986      379999999999998754

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.95  E-value=1.4e-09  Score=90.61  Aligned_cols=43  Identities=28%  Similarity=0.323  Sum_probs=40.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      +|+|+|||||++||++|..|++.|++|+|||+.+.+||.+.|.
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG  348 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG  348 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc
Confidence            5899999999999999999999999999999999999998875

>PRK07233 hypothetical protein; Provisional

Probab=98.95  E-value=1.3e-09  Score=83.55  Aligned_cols=38  Identities=34%  Similarity=0.530  Sum_probs=36.1

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      +|+|||||++||++|..|+++|++|+|||+++.+||.+
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~   38 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLA   38 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence            68999999999999999999999999999999999865

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.94  E-value=1.4e-09  Score=84.20  Aligned_cols=41  Identities=27%  Similarity=0.344  Sum_probs=38.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC----CCeEEEEeeCCCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSRE----GYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~----g~~v~v~Er~~~~Gg~~~   42 (143)
                      +++|+|||||++||++|..|+++    |++|+|||+++.+||.+.
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~   46 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQ   46 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEE
Confidence            47899999999999999999998    999999999999998754

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.93  E-value=1.4e-09  Score=87.45  Aligned_cols=56  Identities=23%  Similarity=0.251  Sum_probs=41.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHH-CCCeEEEEeeCCC---CceeeeecCCC--ccCccCCcccc
Q 038409            3 CHAALIGAGTAGLGATRELSR-EGYLLVVFERAKG---LTQTHLAMPQV--ELQPGLVLTAL   58 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~-~g~~v~v~Er~~~---~Gg~~~~~~~~--~~~~~g~~~~~   58 (143)
                      .+|+|||||++||++|+.|++ .|++|+|+||++.   .|-.....++.  .++.+|+.+.+
T Consensus        33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l   94 (634)
T PRK08294         33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERI   94 (634)
T ss_pred             CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHH
Confidence            489999999999999999999 4999999999875   34222333333  25667765433

>PRK07190 hypothetical protein; Provisional

Probab=98.90  E-value=1e-08  Score=80.33  Aligned_cols=35  Identities=26%  Similarity=0.355  Sum_probs=32.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .+|+|||||++|+++|+.|++.|++|+|+||.+..
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~   40 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP   40 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence            47999999999999999999999999999998764

>PLN02576 protoporphyrinogen oxidase

Probab=98.90  E-value=2.5e-09  Score=83.67  Aligned_cols=40  Identities=28%  Similarity=0.385  Sum_probs=37.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC-CCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSRE-GYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~-g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++||++|..|++. |++|+|||+++.+||...
T Consensus        13 ~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~   53 (496)
T PLN02576         13 KDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNIT   53 (496)
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCcee
Confidence            5899999999999999999999 999999999999998754

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.88  E-value=3.3e-09  Score=76.12  Aligned_cols=40  Identities=35%  Similarity=0.541  Sum_probs=37.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ..|+|||+|++|+++|..|++.|.+|+||||+..+||...
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlA   41 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLA   41 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchh
Confidence            4699999999999999999999999999999988888765

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.88  E-value=4.2e-09  Score=82.24  Aligned_cols=43  Identities=21%  Similarity=0.299  Sum_probs=39.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHH--CCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSR--EGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~--~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      +++|+|||||++|+.+|..|++  .|++|+|||+.+.+||.+.+.
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~g   70 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSG   70 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeec
Confidence            5789999999999999999987  699999999999999988875

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.86  E-value=3.9e-09  Score=81.23  Aligned_cols=40  Identities=30%  Similarity=0.442  Sum_probs=37.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREG--YLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~~Gg~~~   42 (143)
                      |+|+|||||++||++|..|++++  .+++|||+.+.+||...
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~   42 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR   42 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence            58999999999999999999999  89999999999998765

>PRK06996 hypothetical protein; Provisional

Probab=98.85  E-value=4e-08  Score=75.02  Aligned_cols=35  Identities=23%  Similarity=0.419  Sum_probs=30.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC----CeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREG----YLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g----~~v~v~Er~~~   36 (143)
                      ..+|+|||||++|+++|+.|++.|    .+|+|+|+.+.
T Consensus        11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~   49 (398)
T PRK06996         11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP   49 (398)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence            458999999999999999999987    47999999753

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.85  E-value=4.4e-09  Score=82.29  Aligned_cols=38  Identities=32%  Similarity=0.490  Sum_probs=35.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT   40 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~   40 (143)
                      ++|+|||||++||++|..|+++|++|+|||+++.+||.
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~   39 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGC   39 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence            68999999999999999999999999999999988864

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.84  E-value=3.8e-09  Score=82.80  Aligned_cols=38  Identities=29%  Similarity=0.336  Sum_probs=35.1

Q ss_pred             EEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            5 AALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         5 v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      |+|||||++||++|..|+++|++|+|+|+++.+||...
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~   38 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAG   38 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceE
Confidence            68999999999999999999999999999999987643

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK12831 putative oxidoreductase; Provisional

Probab=98.82  E-value=8.5e-09  Score=80.29  Aligned_cols=43  Identities=28%  Similarity=0.428  Sum_probs=39.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      +++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+.
T Consensus       140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g  182 (464)
T PRK12831        140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG  182 (464)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec
Confidence            5789999999999999999999999999999988899888653

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.82  E-value=5.5e-08  Score=73.82  Aligned_cols=34  Identities=29%  Similarity=0.558  Sum_probs=31.1

Q ss_pred             cEEEEcCCHHHHHHHHHH--HHCCCeEEEEeeCCCC
Q 038409            4 HAALIGAGTAGLGATREL--SREGYLLVVFERAKGL   37 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L--~~~g~~v~v~Er~~~~   37 (143)
                      +|+|||||++|+++|..|  ++.|.+|+|+|+.+..
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            589999999999999999  7779999999998765

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.81  E-value=6.3e-09  Score=79.42  Aligned_cols=39  Identities=31%  Similarity=0.543  Sum_probs=36.1

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ   39 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg   39 (143)
                      |.++|+|||||++|++||+.|++.|.+|.++||.+.+|.
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~   40 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGA   40 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence            567999999999999999999999999999999888773

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.81  E-value=6.1e-09  Score=80.66  Aligned_cols=38  Identities=32%  Similarity=0.419  Sum_probs=35.7

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      +|+|||||++||++|..|+++|++|+|||+++.+||..
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~   38 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKV   38 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCc
Confidence            58999999999999999999999999999999998864

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.80  E-value=9.7e-09  Score=83.00  Aligned_cols=43  Identities=30%  Similarity=0.440  Sum_probs=40.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      +++|+|||||++||++|..|++.|++|+|||+.+.+||.+.+.
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g  369 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG  369 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec
Confidence            5799999999999999999999999999999999999888764

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.80  E-value=1.1e-08  Score=79.49  Aligned_cols=43  Identities=21%  Similarity=0.213  Sum_probs=39.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHH-HCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELS-REGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~-~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      +++|+|||||++|+.+|..|. +.|++|+||||.+.+||.+.+.
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G   82 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG   82 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence            468999999999999999765 6799999999999999999876

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.80  E-value=5.1e-09  Score=73.08  Aligned_cols=40  Identities=33%  Similarity=0.410  Sum_probs=32.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce-eee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ-THL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg-~~~   42 (143)
                      .+|+|||||++||++|..|++.|.+|.+|||+..+|| .|.
T Consensus        18 ~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~   58 (230)
T PF01946_consen   18 YDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG   58 (230)
T ss_dssp             ESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence            5799999999999999999999999999999988773 443

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.79  E-value=1.1e-08  Score=85.50  Aligned_cols=42  Identities=36%  Similarity=0.435  Sum_probs=38.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      +++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~  578 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN  578 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence            468999999999999999999999999999999999988754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PLN02568 polyamine oxidase

Probab=98.77  E-value=1.3e-08  Score=80.48  Aligned_cols=40  Identities=30%  Similarity=0.378  Sum_probs=36.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC-----CeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREG-----YLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g-----~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++||++|..|++.|     ++|+|||+++.+||.+.
T Consensus         6 ~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~   50 (539)
T PLN02568          6 PRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRIN   50 (539)
T ss_pred             CcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEE
Confidence            46999999999999999999887     89999999999998764

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=98.75  E-value=1.4e-08  Score=84.36  Aligned_cols=43  Identities=30%  Similarity=0.492  Sum_probs=41.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      +++|+|||+|++||++|-.|-+.||.|+||||++.+||+..|+
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg 1827 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG 1827 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec
Confidence            6899999999999999999999999999999999999999887

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.75  E-value=1.8e-08  Score=77.13  Aligned_cols=40  Identities=28%  Similarity=0.488  Sum_probs=35.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~~Gg~~~   42 (143)
                      .+|+|||||+|||+||..|.+.|+ +++|||..+.+||.+.
T Consensus        22 ~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~   62 (498)
T KOG0685|consen   22 AKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIH   62 (498)
T ss_pred             ceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEe
Confidence            579999999999999999997765 8999999999998754

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.74  E-value=1.9e-08  Score=72.68  Aligned_cols=38  Identities=34%  Similarity=0.566  Sum_probs=35.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ   39 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg   39 (143)
                      ..+|+|||||++|+++|+.|++.|++|+|+|+.+.+||
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Gg   62 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG   62 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence            35899999999999999999999999999999988764

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.74  E-value=1.9e-08  Score=81.15  Aligned_cols=43  Identities=37%  Similarity=0.472  Sum_probs=40.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      +++|+|||+|++||++|..|++.|++|+|||+.+.+||.+.|.
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~g  352 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFG  352 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeecc
Confidence            5899999999999999999999999999999999999988764

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.74  E-value=1.8e-08  Score=84.08  Aligned_cols=42  Identities=38%  Similarity=0.467  Sum_probs=39.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      +|+|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~  580 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN  580 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence            579999999999999999999999999999999989988754

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.72  E-value=2.7e-08  Score=77.19  Aligned_cols=43  Identities=33%  Similarity=0.387  Sum_probs=39.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .++|+|||+|++|+++|..|++.|++|+|||+.+.+||.+.+.
T Consensus       133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g  175 (449)
T TIGR01316       133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG  175 (449)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec
Confidence            4689999999999999999999999999999998899887664

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.72  E-value=2.2e-08  Score=78.16  Aligned_cols=38  Identities=29%  Similarity=0.417  Sum_probs=35.5

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      +|+|||||++|+++|..|++.|++|+|||+++.+||..
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   38 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKV   38 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCcee
Confidence            58999999999999999999999999999999988754

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.71  E-value=2.8e-08  Score=81.56  Aligned_cols=43  Identities=30%  Similarity=0.448  Sum_probs=39.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      +++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.|.
T Consensus       431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g  473 (752)
T PRK12778        431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYG  473 (752)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec
Confidence            4789999999999999999999999999999988899888764

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.70  E-value=2.8e-08  Score=71.69  Aligned_cols=40  Identities=28%  Similarity=0.497  Sum_probs=35.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc-eee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT-QTH   41 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G-g~~   41 (143)
                      ..+|+|||||++|+++|+.|++.|.+|+|+||...+| +.|
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~   61 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSW   61 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence            3589999999999999999999999999999998876 444

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.69  E-value=2.7e-08  Score=83.69  Aligned_cols=42  Identities=26%  Similarity=0.332  Sum_probs=38.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      +++|+|||||++||++|..|++.|++|+|||+.+.+||.+.+
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~  471 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY  471 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence            478999999999999999999999999999999889987655

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.69  E-value=3.5e-08  Score=74.87  Aligned_cols=41  Identities=17%  Similarity=0.267  Sum_probs=37.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .+|+|||||++|+++|..|++.|.+|+|+|+++.+||.+.+
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~   42 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD   42 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence            58999999999999999999999999999999989986543

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.69  E-value=2.6e-08  Score=78.69  Aligned_cols=41  Identities=27%  Similarity=0.268  Sum_probs=36.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC----CCeEEEEeeCCCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSRE----GYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~----g~~v~v~Er~~~~Gg~~~   42 (143)
                      .++|+|||||++||++|..|.+.    |.+|+|||+.+.+||.+.
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~   66 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD   66 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence            46899999999999999999986    679999999999997754

>TIGR02730 carot_isom carotene isomerase

Probab=98.69  E-value=2.9e-08  Score=77.81  Aligned_cols=39  Identities=28%  Similarity=0.335  Sum_probs=36.0

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      +|+|||||++||++|..|+++|++|+|+||++.+||...
T Consensus         2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   40 (493)
T TIGR02730         2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAG   40 (493)
T ss_pred             cEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCcee
Confidence            689999999999999999999999999999999886643

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.68  E-value=2.9e-08  Score=77.08  Aligned_cols=42  Identities=26%  Similarity=0.374  Sum_probs=38.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .+|+|||||++|+++|..|++.|.+|+++|+.+.+||.|.+.
T Consensus         6 yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~   47 (461)
T PRK05249          6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHT   47 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccccc
Confidence            479999999999999999999999999999988899998643

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.68  E-value=4.1e-08  Score=76.60  Aligned_cols=43  Identities=35%  Similarity=0.482  Sum_probs=39.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      +++|+|||+|++|+++|..|++.|++|+|||+.+.+||.+.+.
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g  185 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG  185 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec
Confidence            4789999999999999999999999999999999999887653

>PLN02487 zeta-carotene desaturase

Probab=98.68  E-value=3.2e-08  Score=78.69  Aligned_cols=39  Identities=28%  Similarity=0.390  Sum_probs=36.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      ++|+|||||++||++|+.|.+.|++|+|||+++.+||.+
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~  114 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKV  114 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCce
Confidence            599999999999999999999999999999999988643

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.68  E-value=3e-08  Score=76.22  Aligned_cols=40  Identities=28%  Similarity=0.443  Sum_probs=37.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      .++++|||||++|++||+.|+..|+++.++|+.+++||..
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrm  163 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRM  163 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccH
Confidence            5789999999999999999999999999999999999873

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.67  E-value=4.2e-08  Score=79.32  Aligned_cols=43  Identities=30%  Similarity=0.332  Sum_probs=40.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      +++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+.
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g  235 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG  235 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec
Confidence            4789999999999999999999999999999999999888764

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.67  E-value=3.4e-08  Score=76.59  Aligned_cols=44  Identities=41%  Similarity=0.415  Sum_probs=41.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeecC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMP   45 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~~   45 (143)
                      +++|+|||||++||++|..|.+.|++|++||+.+..||...|+.
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGI  166 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGI  166 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecC
Confidence            47899999999999999999999999999999999999998873

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.66  E-value=4.5e-08  Score=76.06  Aligned_cols=42  Identities=36%  Similarity=0.495  Sum_probs=39.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      +++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~  181 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRY  181 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeec
Confidence            578999999999999999999999999999999999887765

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.66  E-value=5.2e-08  Score=75.96  Aligned_cols=43  Identities=35%  Similarity=0.456  Sum_probs=39.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      +++|+|||+|++|+++|..|++.|++|++||+.+.+||.+.+.
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g  183 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG  183 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec
Confidence            4789999999999999999999999999999999999887654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.65  E-value=4.4e-08  Score=74.74  Aligned_cols=41  Identities=32%  Similarity=0.572  Sum_probs=37.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ..+|+|||||.+||++|..|++.|++|+|+|.++.+||...
T Consensus         7 ~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~   47 (450)
T COG1231           7 TADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSL   47 (450)
T ss_pred             CCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeE
Confidence            35899999999999999999999999999999999987643

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.65  E-value=5e-08  Score=70.88  Aligned_cols=35  Identities=26%  Similarity=0.450  Sum_probs=32.7

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      +|+|||||++|+++|+.|++.|++|+|+||++..+
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~   36 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPR   36 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            79999999999999999999999999999987654

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.64  E-value=5.1e-08  Score=75.96  Aligned_cols=42  Identities=24%  Similarity=0.343  Sum_probs=38.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .+|+|||+|++|+++|..+++.|.+|+|+|+++.+||+|.+.
T Consensus         4 ~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~   45 (466)
T PRK06115          4 YDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNV   45 (466)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccC
Confidence            489999999999999999999999999999878899987543

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.64  E-value=4.7e-08  Score=74.49  Aligned_cols=38  Identities=26%  Similarity=0.480  Sum_probs=34.4

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCc
Q 038409            1 MSCHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLT   38 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~G   38 (143)
                      |+.+|+|||||++|+++|+.|++.  |++|+|+||...+|
T Consensus         1 ~~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~   40 (393)
T PRK11728          1 AMYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA   40 (393)
T ss_pred             CCccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccc
Confidence            667999999999999999999998  99999999986543

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.64  E-value=4.8e-08  Score=75.82  Aligned_cols=36  Identities=31%  Similarity=0.430  Sum_probs=32.8

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |..+|+|||||++|+++|..|++.|++|+|+||.+.
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            356899999999999999999999999999999753

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.63  E-value=4.8e-08  Score=65.48  Aligned_cols=31  Identities=32%  Similarity=0.528  Sum_probs=27.4

Q ss_pred             EEEcCCHHHHHHHHHHHHC-----CCeEEEEeeCCC
Q 038409            6 ALIGAGTAGLGATRELSRE-----GYLLVVFERAKG   36 (143)
Q Consensus         6 ~IIGaG~~Gl~~A~~L~~~-----g~~v~v~Er~~~   36 (143)
                      +|||+|++|++++..|.+.     ..+++|||+++.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            6999999999999999977     469999999655

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.63  E-value=5.5e-08  Score=74.36  Aligned_cols=34  Identities=38%  Similarity=0.717  Sum_probs=32.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||||+.|+++|+.|++.|.+|+|+||.+.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~   35 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY   35 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            6999999999999999999999999999999864

>PLN02529 lysine-specific histone demethylase 1

Probab=98.63  E-value=5.5e-08  Score=79.18  Aligned_cols=41  Identities=32%  Similarity=0.437  Sum_probs=37.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .++|+|||||++|+++|..|++.|++|+|||+++.+||.+.
T Consensus       160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~  200 (738)
T PLN02529        160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVY  200 (738)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCcee
Confidence            36899999999999999999999999999999988887654

>PLN02676 polyamine oxidase

Probab=98.63  E-value=5e-08  Score=76.43  Aligned_cols=41  Identities=24%  Similarity=0.439  Sum_probs=36.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~~Gg~~~   42 (143)
                      .++|+|||||++||++|..|++.|+ +|+|+|+++.+||.+.
T Consensus        26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~   67 (487)
T PLN02676         26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMR   67 (487)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcce
Confidence            3589999999999999999999998 6999999999887654

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.62  E-value=6.3e-08  Score=74.74  Aligned_cols=36  Identities=39%  Similarity=0.518  Sum_probs=33.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      .+|+|||||++|+++|+.|+++|++|+|+||.+.+|
T Consensus         6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g   41 (428)
T PRK10157          6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAG   41 (428)
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence            589999999999999999999999999999987654

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=98.62  E-value=5.8e-08  Score=73.59  Aligned_cols=42  Identities=26%  Similarity=0.302  Sum_probs=36.1

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeE--EEEeeCCCCceeee
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLL--VVFERAKGLTQTHL   42 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v--~v~Er~~~~Gg~~~   42 (143)
                      ++++|+|+|||++||++|..|++.+.++  ++||..+.+||-+.
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwir   53 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIR   53 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceee
Confidence            4689999999999999999999997755  66999999987543

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.61  E-value=6.3e-08  Score=74.26  Aligned_cols=37  Identities=30%  Similarity=0.376  Sum_probs=34.2

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      |+++|+|||||++|+.+|++|++.|++|+|+|+++..
T Consensus         1 ~~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          1 MMKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            6789999999999999999999999999999987654

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.60  E-value=3.6e-08  Score=73.12  Aligned_cols=39  Identities=33%  Similarity=0.436  Sum_probs=34.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      +++|+|||+|++||+||..|++. ++||+||....+||.-
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha   46 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHA   46 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCcc
Confidence            46999999999999999999877 8999999988888653

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.60  E-value=7.2e-08  Score=71.57  Aligned_cols=31  Identities=42%  Similarity=0.707  Sum_probs=30.1

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +|+|||||++|+++|+.|++.|++|+|+|+.
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence            5899999999999999999999999999998

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.60  E-value=1.3e-07  Score=72.71  Aligned_cols=46  Identities=22%  Similarity=0.290  Sum_probs=39.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC---CCeEEEEeeCCCCceeeeecCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSRE---GYLLVVFERAKGLTQTHLAMPQV   47 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~---g~~v~v~Er~~~~Gg~~~~~~~~   47 (143)
                      +++|+|||+|++|+.+|.+|.+.   ...+.|||+.+..|....|++..
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~   49 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEE   49 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCC
Confidence            47999999999999999999975   12399999999999888887544

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.59  E-value=8.2e-08  Score=74.62  Aligned_cols=42  Identities=29%  Similarity=0.386  Sum_probs=37.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      ..+|+|||||++|+++|..|++.|++|+++|+.. +||+|.+.
T Consensus         4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~   45 (462)
T PRK06416          4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNR   45 (462)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeec
Confidence            3589999999999999999999999999999876 99988643

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.59  E-value=7.4e-08  Score=79.00  Aligned_cols=41  Identities=32%  Similarity=0.427  Sum_probs=37.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .++|+|||||++|+++|..|.+.|++|+|+|++..+||...
T Consensus       238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~  278 (808)
T PLN02328        238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVK  278 (808)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCccc
Confidence            36899999999999999999999999999999988887643

>PRK10015 oxidoreductase; Provisional

Probab=98.58  E-value=9.5e-08  Score=73.76  Aligned_cols=36  Identities=33%  Similarity=0.471  Sum_probs=33.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      .+|+|||||++|+++|+.|++.|++|+|+||.+..|
T Consensus         6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g   41 (429)
T PRK10015          6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG   41 (429)
T ss_pred             cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            589999999999999999999999999999987654

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.58  E-value=1.2e-07  Score=75.49  Aligned_cols=43  Identities=33%  Similarity=0.395  Sum_probs=39.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      +++|+|||+|++||++|..|++.|++|++||+.+.+||.+.+.
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g  179 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG  179 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec
Confidence            5789999999999999999999999999999999999887654

>PRK14727 putative mercuric reductase; Provisional

Probab=98.57  E-value=1.1e-07  Score=74.26  Aligned_cols=43  Identities=23%  Similarity=0.389  Sum_probs=39.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      ..+|+|||+|++|+++|..|++.|.+|+++|+.+.+||+|.+.
T Consensus        16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~   58 (479)
T PRK14727         16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNV   58 (479)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccc
Confidence            3589999999999999999999999999999988899999754

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.57  E-value=1.2e-07  Score=73.71  Aligned_cols=41  Identities=24%  Similarity=0.353  Sum_probs=37.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .+|+|||||++|+.+|..|++.|.+|+|+|+ +.+||+|...
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~   42 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNV   42 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeec
Confidence            5899999999999999999999999999999 7899988743

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.56  E-value=9e-08  Score=78.71  Aligned_cols=44  Identities=20%  Similarity=0.136  Sum_probs=36.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCC---CceeeeecCC
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKG---LTQTHLAMPQ   46 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~---~Gg~~~~~~~   46 (143)
                      |+|+|||||++|+++|+.|++.  |++|+||||++.   .|..+.++++
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~   49 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDA   49 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHH
Confidence            5899999999999999999998  899999999876   4544444443

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.56  E-value=1.4e-07  Score=72.97  Aligned_cols=40  Identities=25%  Similarity=0.354  Sum_probs=36.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC-Cceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG-LTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~-~Gg~~~   42 (143)
                      .+|+|||||++|+++|..|++.|++|+|+|+.+. +||+|.
T Consensus         4 ~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~   44 (438)
T PRK07251          4 YDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI   44 (438)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence            5899999999999999999999999999999865 698875

>TIGR02053 MerA mercuric reductase

Probab=98.56  E-value=1.2e-07  Score=73.85  Aligned_cols=40  Identities=25%  Similarity=0.367  Sum_probs=36.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .+|+|||||++|+++|..|++.|.+|+|+|+.+ +||+|.+
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n   40 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVN   40 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeee
Confidence            379999999999999999999999999999865 8998764

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06116 glutathione reductase; Validated

Probab=98.56  E-value=8.7e-08  Score=74.29  Aligned_cols=40  Identities=20%  Similarity=0.338  Sum_probs=36.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .+|+|||||++|+++|..|++.|++|+|+|+. .+||+|..
T Consensus         5 ~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n   44 (450)
T PRK06116          5 YDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVN   44 (450)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhc
Confidence            47999999999999999999999999999984 78998753

>PRK14694 putative mercuric reductase; Provisional

Probab=98.56  E-value=1.1e-07  Score=74.04  Aligned_cols=40  Identities=25%  Similarity=0.426  Sum_probs=37.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .+|+|||||++|+++|..|++.|.+|+|+|+. .+||+|..
T Consensus         7 ~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n   46 (468)
T PRK14694          7 LHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN   46 (468)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence            47999999999999999999999999999985 68999875

>PLN02612 phytoene desaturase

Probab=98.56  E-value=1.1e-07  Score=75.74  Aligned_cols=39  Identities=26%  Similarity=0.376  Sum_probs=36.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT   40 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~   40 (143)
                      +++|+|||||++||++|..|++.|+++++||+++.+||.
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~  131 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGK  131 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCc
Confidence            468999999999999999999999999999999887765

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.56  E-value=1.2e-07  Score=71.76  Aligned_cols=36  Identities=31%  Similarity=0.485  Sum_probs=33.3

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |.++|+|||||+.|+++|+.|+++|.+|+++|+...
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~   38 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA   38 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence            457999999999999999999999999999998765

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.55  E-value=1.1e-07  Score=72.76  Aligned_cols=35  Identities=29%  Similarity=0.458  Sum_probs=32.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      ++|+|||||++|+++|+.|++.|++|+|+||.+..
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~   35 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN   35 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            48999999999999999999999999999997653

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.55  E-value=1.2e-07  Score=73.97  Aligned_cols=42  Identities=29%  Similarity=0.343  Sum_probs=38.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      ..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+||+|..
T Consensus         4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n   45 (471)
T PRK06467          4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLN   45 (471)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccC
Confidence            358999999999999999999999999999998889998754

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.55  E-value=1.3e-07  Score=73.29  Aligned_cols=40  Identities=25%  Similarity=0.351  Sum_probs=37.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .+|+|||||++|+++|+.+++.|++|+|+|+ ..+||+|..
T Consensus         3 yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~   42 (446)
T TIGR01424         3 YDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI   42 (446)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence            5899999999999999999999999999998 579999874

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.54  E-value=1.7e-07  Score=72.53  Aligned_cols=41  Identities=24%  Similarity=0.442  Sum_probs=37.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC-Cceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG-LTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~-~Gg~~~~   43 (143)
                      .+|+|||||++|+++|..|++.|.+|+|+|+.+. +||+|..
T Consensus         4 yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~   45 (441)
T PRK08010          4 YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN   45 (441)
T ss_pred             CCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence            4899999999999999999999999999999764 8998863

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.54  E-value=1.4e-07  Score=73.20  Aligned_cols=40  Identities=33%  Similarity=0.433  Sum_probs=37.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .+|+|||||++|+++|..|++.|.+|+|+|+ ..+||.|.+
T Consensus         4 yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~   43 (460)
T PRK06292          4 YDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLN   43 (460)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceec
Confidence            4899999999999999999999999999999 678998864

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.54  E-value=1.2e-07  Score=71.98  Aligned_cols=37  Identities=32%  Similarity=0.495  Sum_probs=33.7

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT   40 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~   40 (143)
                      +|+|||||++|+++|..|++.|++|+|+|+.+..++.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~   37 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN   37 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence            5899999999999999999999999999998877653

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=3.2e-07  Score=67.86  Aligned_cols=38  Identities=26%  Similarity=0.369  Sum_probs=30.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeeCCCCcee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYL-LVVFERAKGLTQT   40 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~-v~v~Er~~~~Gg~   40 (143)
                      ..+|+|||||++||+||+.+.+.+.+ +.|+|+ ...||.
T Consensus         3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~   41 (305)
T COG0492           3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQ   41 (305)
T ss_pred             eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCc
Confidence            35899999999999999999999998 666665 444533

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.53  E-value=1.2e-07  Score=78.75  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|+|+|||+|++|+++|..|++.|++|++||+.+
T Consensus       383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            5799999999999999999999999999999854

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.53  E-value=1.3e-07  Score=71.32  Aligned_cols=35  Identities=26%  Similarity=0.367  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ..+|+|||||+.|+++|+.|++.|++|+|+||...
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~   37 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP   37 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence            45899999999999999999999999999999754

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.53  E-value=1.3e-07  Score=73.47  Aligned_cols=40  Identities=23%  Similarity=0.387  Sum_probs=36.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .+|+|||||++|+++|..|++.|.+|+|+|+. .+||+|..
T Consensus         3 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~   42 (450)
T TIGR01421         3 YDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVN   42 (450)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceec
Confidence            58999999999999999999999999999984 68998864

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK10262 thioredoxin reductase; Provisional

Probab=98.53  E-value=1.6e-07  Score=69.66  Aligned_cols=41  Identities=17%  Similarity=0.182  Sum_probs=35.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .++|+|||||++||++|..|++.|++++++|+. ..||.+..
T Consensus         6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~   46 (321)
T PRK10262          6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT   46 (321)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence            468999999999999999999999999999964 56776543

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.53  E-value=1.6e-07  Score=73.20  Aligned_cols=41  Identities=24%  Similarity=0.310  Sum_probs=37.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .+|+|||||++|+++|..|++.|.+|+|+|+. .+||+|...
T Consensus         5 ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~   45 (472)
T PRK05976          5 YDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHK   45 (472)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcC
Confidence            57999999999999999999999999999985 789998643

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.52  E-value=1.5e-07  Score=71.93  Aligned_cols=35  Identities=23%  Similarity=0.458  Sum_probs=32.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      |+|+|||||+.|+++|..|++.|++|+|+|+...+
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~   35 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGP   35 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCch
Confidence            48999999999999999999999999999997543

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.51  E-value=2.2e-07  Score=72.78  Aligned_cols=43  Identities=33%  Similarity=0.473  Sum_probs=38.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      +++|+|||+|++|+++|..|++.|++|+|||+.+.+||.+.+.
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g  185 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG  185 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc
Confidence            4789999999999999999999999999999998888876553

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.51  E-value=1.4e-07  Score=72.86  Aligned_cols=39  Identities=23%  Similarity=0.379  Sum_probs=32.2

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      +|+|||||++|++||+++++.|.+|.|+|+.+.+||...
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t   39 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT   39 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence            589999999999999999999999999999999987654

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.51  E-value=1.9e-07  Score=68.59  Aligned_cols=41  Identities=15%  Similarity=0.243  Sum_probs=37.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      +.+.+|||||++|+.+|..|++.|.+|.|+||++.+||.+-
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaY   41 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAY   41 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccc
Confidence            35889999999999999999999999999999999998764

>PRK13748 putative mercuric reductase; Provisional

Probab=98.50  E-value=1.7e-07  Score=74.45  Aligned_cols=41  Identities=27%  Similarity=0.437  Sum_probs=37.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .+|+|||||++|+++|..|++.|.+|.|+|+. .+||+|.+.
T Consensus        99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~  139 (561)
T PRK13748         99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNV  139 (561)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecccc
Confidence            58999999999999999999999999999986 899998653

>PTZ00367 squalene epoxidase; Provisional

Probab=98.50  E-value=1.7e-07  Score=74.64  Aligned_cols=33  Identities=24%  Similarity=0.444  Sum_probs=31.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      .+|+|||||++|+++|++|++.|++|+|+||.+
T Consensus        34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            489999999999999999999999999999976

>PLN02985 squalene monooxygenase

Probab=98.50  E-value=2e-07  Score=73.56  Aligned_cols=34  Identities=26%  Similarity=0.452  Sum_probs=31.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||++|+++|.+|++.|++|+|+||.+.
T Consensus        44 ~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~   77 (514)
T PLN02985         44 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR   77 (514)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence            5799999999999999999999999999999754

>PRK06370 mercuric reductase; Validated

Probab=98.49  E-value=2.2e-07  Score=72.32  Aligned_cols=41  Identities=29%  Similarity=0.332  Sum_probs=36.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .+|+|||+|++|+++|..|++.|++|+|+|+. .+||.|.+.
T Consensus         6 ~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~   46 (463)
T PRK06370          6 YDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNT   46 (463)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceecc
Confidence            48999999999999999999999999999985 678887643

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.49  E-value=1.7e-07  Score=71.29  Aligned_cols=32  Identities=38%  Similarity=0.624  Sum_probs=30.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      .+|+|||||++|+++|+.|++.|++|+++|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            37999999999999999999999999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK11445 putative oxidoreductase; Provisional

Probab=98.49  E-value=1.8e-07  Score=70.39  Aligned_cols=34  Identities=24%  Similarity=0.427  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +.+|+|||||++|+++|+.|++. ++|+++||.+.
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~   34 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ   34 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence            36899999999999999999999 99999999875

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.49  E-value=2.7e-07  Score=73.40  Aligned_cols=40  Identities=23%  Similarity=0.278  Sum_probs=35.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .+|+|||||++|+++|..|++.|++|+|||+. ..||.+..
T Consensus         5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~   44 (555)
T TIGR03143         5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI   44 (555)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence            58999999999999999999999999999985 67877654

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR00275 flavoprotein, HI0933 family

Probab=98.47  E-value=1.5e-07  Score=72.08  Aligned_cols=39  Identities=33%  Similarity=0.528  Sum_probs=34.4

Q ss_pred             EEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            6 ALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         6 ~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      +|||||++|+++|+.|++.|.+|+|+||++.+|+.+..+
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~s   39 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLIS   39 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCcccccccccc
Confidence            599999999999999999999999999998887654433

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.46  E-value=3.9e-07  Score=68.56  Aligned_cols=42  Identities=33%  Similarity=0.426  Sum_probs=38.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      +++|+|||+|++|+.+|..|++.|++++++|+.+.+||.+.+
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~   59 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF   59 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee
Confidence            468999999999999999999999999999999888877643

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.46  E-value=2.7e-07  Score=69.71  Aligned_cols=34  Identities=24%  Similarity=0.329  Sum_probs=31.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||+.|+++|+.|+++|.+|+|+|+...
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~   34 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL   34 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            3799999999999999999999999999999653

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.43  E-value=3.8e-07  Score=76.90  Aligned_cols=42  Identities=26%  Similarity=0.479  Sum_probs=38.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      ++|+|||||++||++|+.|++.|++|+|+|+.+.+||.+.+.
T Consensus       164 ~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~  205 (985)
T TIGR01372       164 CDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSE  205 (985)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeecc
Confidence            589999999999999999999999999999999999887653

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.42  E-value=3.2e-07  Score=70.30  Aligned_cols=37  Identities=30%  Similarity=0.480  Sum_probs=32.0

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT   40 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~   40 (143)
                      +|+|||+|.+|++||+.+++.|.+|+|+|+.+..||.
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~   37 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGS   37 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSG
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccc
Confidence            5899999999999999999999999999998886653

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.41  E-value=3.8e-07  Score=73.94  Aligned_cols=34  Identities=32%  Similarity=0.597  Sum_probs=31.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||||++|+++|+.|+++|++|+|+||...
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~  294 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEA  294 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            4899999999999999999999999999999754

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.41  E-value=3.7e-07  Score=71.02  Aligned_cols=40  Identities=28%  Similarity=0.386  Sum_probs=35.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      |+|+|||+|++|+++|..+++.|.+|+|+||. .+||+|.+
T Consensus         1 ~~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n   40 (458)
T PRK06912          1 SKLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLN   40 (458)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCC
Confidence            38999999999999999999999999999985 57888753

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.41  E-value=8.2e-07  Score=52.82  Aligned_cols=33  Identities=24%  Similarity=0.442  Sum_probs=30.9

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|||||+.|+.+|..|++.|.+|+++++++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence            689999999999999999999999999999754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.41  E-value=4.6e-07  Score=70.64  Aligned_cols=41  Identities=22%  Similarity=0.276  Sum_probs=36.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .+|+|||||++|+++|..|++.|.+|+|+|+. .+||+|...
T Consensus         5 ~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~   45 (466)
T PRK07818          5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNV   45 (466)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecC
Confidence            48999999999999999999999999999984 678887643

>PLN03000 amine oxidase

Probab=98.41  E-value=4.1e-07  Score=75.04  Aligned_cols=40  Identities=33%  Similarity=0.498  Sum_probs=37.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++|+.+|..|++.|++|+|||+++.+||.+.
T Consensus       185 ~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~  224 (881)
T PLN03000        185 SSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVY  224 (881)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcc
Confidence            6899999999999999999999999999999999887754

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.40  E-value=4.3e-07  Score=70.16  Aligned_cols=37  Identities=24%  Similarity=0.424  Sum_probs=33.6

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCCCcee
Q 038409            4 HAALIGAGTAGLGATRELSREG-YLLVVFERAKGLTQT   40 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~~Gg~   40 (143)
                      +|+|||+|++|+++|+.++++| .+|+|+||.+..||.
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~   38 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGN   38 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCc
Confidence            5899999999999999999999 999999998876544

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.40  E-value=5.4e-07  Score=67.85  Aligned_cols=34  Identities=29%  Similarity=0.500  Sum_probs=31.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||+.|+++|+.|++.|.+|+|+|+...
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            3799999999999999999999999999998754

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.39  E-value=5.6e-07  Score=70.21  Aligned_cols=42  Identities=26%  Similarity=0.361  Sum_probs=37.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      |++|+|||+|++|+.+|..+++.|.+|+++|+. .+||.|.+.
T Consensus         1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~   42 (466)
T PRK07845          1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLT   42 (466)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCccccc
Confidence            479999999999999999999999999999986 478887643

>PRK13984 putative oxidoreductase; Provisional

Probab=98.39  E-value=7.3e-07  Score=71.59  Aligned_cols=43  Identities=28%  Similarity=0.347  Sum_probs=39.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      +++|+|||+|++|+++|..|++.|++|+|||+.+..||.+.+.
T Consensus       283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~  325 (604)
T PRK13984        283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG  325 (604)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec
Confidence            4689999999999999999999999999999999888877653

>PRK07121 hypothetical protein; Validated

Probab=98.38  E-value=6.4e-07  Score=70.28  Aligned_cols=38  Identities=32%  Similarity=0.459  Sum_probs=34.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT   40 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~   40 (143)
                      .+|+|||+|.+|+++|+.+++.|.+|+|+||.+..||.
T Consensus        21 ~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~   58 (492)
T PRK07121         21 ADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGA   58 (492)
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCc
Confidence            57999999999999999999999999999998776643

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.38  E-value=5.9e-07  Score=70.78  Aligned_cols=38  Identities=26%  Similarity=0.379  Sum_probs=34.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT   40 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~   40 (143)
                      .+|+|||+|.+|+++|+.+++.|.+|+|+||.+..||.
T Consensus        62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~   99 (506)
T PRK06481         62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGN   99 (506)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCc
Confidence            47999999999999999999999999999998877653

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.38  E-value=6.5e-07  Score=69.71  Aligned_cols=34  Identities=26%  Similarity=0.369  Sum_probs=32.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||+|++|+++|+.+++.|.+|+|+||.+.
T Consensus         5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~   38 (466)
T PRK08274          5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAPR   38 (466)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5899999999999999999999999999999874

>PLN02976 amine oxidase

Probab=98.37  E-value=6.1e-07  Score=77.02  Aligned_cols=42  Identities=31%  Similarity=0.513  Sum_probs=38.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .++|+|||||++|+++|..|++.|++|+|||+++.+||.+..
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t  734 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT  734 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence            468999999999999999999999999999999999987653

>PRK09897 hypothetical protein; Provisional

Probab=98.37  E-value=7.7e-07  Score=70.41  Aligned_cols=44  Identities=20%  Similarity=0.224  Sum_probs=37.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCCCceeeeecC
Q 038409            2 SCHAALIGAGTAGLGATRELSREG--YLLVVFERAKGLTQTHLAMP   45 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~~Gg~~~~~~   45 (143)
                      +++|+|||||++|+++|..|.+.+  .+|+|||++..+|..+.|++
T Consensus         1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~   46 (534)
T PRK09897          1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSD   46 (534)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecC
Confidence            479999999999999999998764  58999999988886666554

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.37  E-value=1.3e-06  Score=69.27  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=30.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|+|+|||+|.+|..+|..|++...+|.+.-|+.
T Consensus       183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~  216 (531)
T PF00743_consen  183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG  216 (531)
T ss_dssp             TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred             CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence            6899999999999999999999888999988863

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.36  E-value=1.4e-06  Score=66.56  Aligned_cols=34  Identities=24%  Similarity=0.444  Sum_probs=30.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      .++|+|||||++|+.+|..|++.|+  +|+++++.+
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~   38 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER   38 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence            3589999999999999999999877  799998764

>PTZ00058 glutathione reductase; Provisional

Probab=98.35  E-value=7.5e-07  Score=70.94  Aligned_cols=40  Identities=25%  Similarity=0.400  Sum_probs=36.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .+|+|||||++|+.+|..+++.|.+|.|+|+. .+||+|.+
T Consensus        49 yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln   88 (561)
T PTZ00058         49 YDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN   88 (561)
T ss_pred             ccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence            47999999999999999999999999999985 68998764

>PLN02661 Putative thiazole synthesis

Probab=98.34  E-value=7.5e-07  Score=66.84  Aligned_cols=40  Identities=28%  Similarity=0.473  Sum_probs=35.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC-CCeEEEEeeCCCCce-eee
Q 038409            3 CHAALIGAGTAGLGATRELSRE-GYLLVVFERAKGLTQ-THL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~-g~~v~v~Er~~~~Gg-~~~   42 (143)
                      .+|+|||||++|+++|+.|++. |.+|+++||...+|| .|.
T Consensus        93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~  134 (357)
T PLN02661         93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWL  134 (357)
T ss_pred             CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceee
Confidence            5899999999999999999976 899999999888764 553

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.34  E-value=8.3e-07  Score=61.18  Aligned_cols=33  Identities=39%  Similarity=0.724  Sum_probs=30.4

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|||||++|+++|..|++.+++++++|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            689999999999999999999999999987653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.34  E-value=8.8e-07  Score=69.85  Aligned_cols=35  Identities=23%  Similarity=0.415  Sum_probs=32.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .+|+|||||+.|+++|+.|++.|.+|+|+||.+..
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~   41 (508)
T PRK12266          7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLA   41 (508)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            58999999999999999999999999999997553

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.34  E-value=7.9e-07  Score=68.47  Aligned_cols=36  Identities=25%  Similarity=0.401  Sum_probs=32.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      .+|+|||||.+|+.+|..|++.|++|+|||+++.++
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~   36 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL   36 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence            379999999999999999999999999999877644

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.33  E-value=2e-06  Score=65.68  Aligned_cols=35  Identities=26%  Similarity=0.486  Sum_probs=31.5

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREG--YLLVVFERAK   35 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~   35 (143)
                      |+++|+|||||.+|+.+|..|.+.-  .++++++|++
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~   38 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRD   38 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCC
Confidence            4689999999999999999999974  8899999974

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.32  E-value=1.2e-06  Score=69.72  Aligned_cols=40  Identities=28%  Similarity=0.473  Sum_probs=35.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC--CCceee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK--GLTQTH   41 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~--~~Gg~~   41 (143)
                      ..+|+|||+|.+||++|+.+++.|.+|+|+|+.+  ..||..
T Consensus         4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s   45 (549)
T PRK12834          4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA   45 (549)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence            3589999999999999999999999999999988  556543

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.31  E-value=9.3e-07  Score=68.98  Aligned_cols=35  Identities=23%  Similarity=0.459  Sum_probs=32.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|++|+++|+.+++.|.+|+|+|+.+.
T Consensus         1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~   35 (466)
T PRK08401          1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK   35 (466)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            47999999999999999999999999999999754

>PLN02507 glutathione reductase

Probab=98.31  E-value=1.2e-06  Score=68.97  Aligned_cols=41  Identities=27%  Similarity=0.304  Sum_probs=36.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEee---------CCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFER---------AKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er---------~~~~Gg~~~~   43 (143)
                      .+|+|||||++|+.+|..+.+.|.+|.|+|+         ...+||+|.+
T Consensus        26 yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n   75 (499)
T PLN02507         26 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI   75 (499)
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence            4699999999999999999999999999996         2458999875

>PLN02463 lycopene beta cyclase

Probab=98.30  E-value=9.3e-07  Score=68.65  Aligned_cols=34  Identities=21%  Similarity=0.442  Sum_probs=31.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||++|+++|..|++.|++|+|+|+++.
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~   62 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL   62 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence            4899999999999999999999999999998754

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.30  E-value=1.2e-06  Score=69.96  Aligned_cols=39  Identities=31%  Similarity=0.511  Sum_probs=35.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      .+|+|||+|++|+++|+.++++|.+|+|+||.+..||..
T Consensus        10 ~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~   48 (574)
T PRK12842         10 CDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTT   48 (574)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCcc
Confidence            579999999999999999999999999999998876543

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.30  E-value=1.1e-06  Score=68.64  Aligned_cols=41  Identities=27%  Similarity=0.338  Sum_probs=36.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEee------CCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFER------AKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er------~~~~Gg~~~~   43 (143)
                      .+++|||+|++|+++|+.+++.|.+|+|+|+      ...+||.|..
T Consensus         5 ~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n   51 (475)
T PRK06327          5 FDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLN   51 (475)
T ss_pred             eeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccc
Confidence            4799999999999999999999999999998      3557888764

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.30  E-value=1.3e-06  Score=69.04  Aligned_cols=38  Identities=21%  Similarity=0.295  Sum_probs=34.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .+|+|||||++|+++|..|++.|++++|+++.  +||.|.
T Consensus       212 ~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~  249 (517)
T PRK15317        212 YDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVL  249 (517)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeee
Confidence            58999999999999999999999999999863  788774

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.29  E-value=9.1e-07  Score=67.58  Aligned_cols=35  Identities=26%  Similarity=0.355  Sum_probs=32.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  178 (396)
T PRK09754        144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAAT  178 (396)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            46899999999999999999999999999998654

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.28  E-value=1.4e-06  Score=68.56  Aligned_cols=41  Identities=29%  Similarity=0.551  Sum_probs=35.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC--------CCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK--------GLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~--------~~Gg~~~~   43 (143)
                      .+|+|||||++|+.+|..|++.|.+|+|+|+..        .+||+|..
T Consensus         6 yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n   54 (499)
T PTZ00052          6 YDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVN   54 (499)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceecc
Confidence            589999999999999999999999999999631        38998743

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.28  E-value=1.2e-06  Score=68.71  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=31.1

Q ss_pred             cEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCC
Q 038409            4 HAALIGAGTAGLGATRELSRE--GYLLVVFERAKGL   37 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~   37 (143)
                      +|+|||||+.|+++|..|++.  |.+|+|+||.+.+
T Consensus         2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~   37 (483)
T TIGR01320         2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAV   37 (483)
T ss_pred             cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcc
Confidence            799999999999999999997  9999999996643

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.27  E-value=1.7e-06  Score=68.95  Aligned_cols=39  Identities=15%  Similarity=0.340  Sum_probs=35.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      .+|+|||+|.+|+++|+.+++.|.+|+|+|+.+..||..
T Consensus         7 ~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~   45 (557)
T PRK12844          7 YDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST   45 (557)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence            579999999999999999999999999999987776553

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.27  E-value=1.6e-06  Score=68.49  Aligned_cols=38  Identities=21%  Similarity=0.394  Sum_probs=34.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      .+|+|||+| +|+++|+.+++.|.+|+|+|+.+..||..
T Consensus         8 ~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t   45 (513)
T PRK12837          8 VDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT   45 (513)
T ss_pred             cCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence            589999999 99999999999999999999988766443

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.27  E-value=1.5e-06  Score=69.13  Aligned_cols=34  Identities=26%  Similarity=0.484  Sum_probs=31.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||+.|+++|+.|+++|.+|+|+||.+.
T Consensus         7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~   40 (546)
T PRK11101          7 TDVIIIGGGATGAGIARDCALRGLRCILVERHDI   40 (546)
T ss_pred             ccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence            5799999999999999999999999999999654

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.26  E-value=1.5e-06  Score=68.36  Aligned_cols=34  Identities=24%  Similarity=0.439  Sum_probs=32.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||+.|+++|+.|+++|.+|+|+||.+.
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~   40 (502)
T PRK13369          7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDL   40 (502)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            4899999999999999999999999999999854

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.25  E-value=1.5e-06  Score=67.72  Aligned_cols=34  Identities=18%  Similarity=0.326  Sum_probs=30.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~   36 (143)
                      .+|+|||||+.|+++|+.|+++  |.+|+|+|+...
T Consensus        25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~   60 (460)
T TIGR03329        25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC   60 (460)
T ss_pred             eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence            4799999999999999999998  899999998643

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.25  E-value=1.6e-06  Score=68.53  Aligned_cols=38  Identities=18%  Similarity=0.268  Sum_probs=33.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++|+++|..|++.|++|+|++.  .+||.+.
T Consensus       213 ~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~  250 (515)
T TIGR03140       213 YDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK  250 (515)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence            6899999999999999999999999999975  4777664

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.24  E-value=1.3e-06  Score=67.75  Aligned_cols=40  Identities=15%  Similarity=0.096  Sum_probs=37.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .+|+|||+|++|+.+|..|++.|.+|.++||++..||.+.
T Consensus         5 ~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a   44 (443)
T PTZ00363          5 YDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA   44 (443)
T ss_pred             ceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence            4799999999999999999999999999999999998765

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.24  E-value=2.5e-06  Score=66.23  Aligned_cols=43  Identities=28%  Similarity=0.395  Sum_probs=39.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      ..+++|||+|++|..+|..+++.|.++.++|+...+||+|...
T Consensus         4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~   46 (454)
T COG1249           4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV   46 (454)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence            3689999999999999999999999999999988899998753

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.21  E-value=1.9e-06  Score=65.38  Aligned_cols=35  Identities=20%  Similarity=0.390  Sum_probs=31.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|+|||+|..|+.+|..|.+.|.+|+++++.+.
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~  175 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAAS  175 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc
Confidence            36899999999999999999999999999998653

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.21  E-value=2e-06  Score=69.43  Aligned_cols=35  Identities=31%  Similarity=0.334  Sum_probs=32.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .+|+|||+|++|++||+.+++.|.+|+|+|+.+..
T Consensus         9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~   43 (626)
T PRK07803          9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG   43 (626)
T ss_pred             ecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence            47999999999999999999999999999997654

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.20  E-value=2.6e-06  Score=67.90  Aligned_cols=38  Identities=26%  Similarity=0.406  Sum_probs=34.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT   40 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~   40 (143)
                      .+|+|||+|.+|+++|+.+++.|.+|+|+|+.+..||.
T Consensus         8 ~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~   45 (557)
T PRK07843          8 YDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGS   45 (557)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcc
Confidence            48999999999999999999999999999998876653

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.19  E-value=2.4e-06  Score=68.52  Aligned_cols=35  Identities=26%  Similarity=0.307  Sum_probs=32.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .+|+|||+|++|++||+.+++.|.+|+|+|+.+..
T Consensus         4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~   38 (589)
T PRK08641          4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK   38 (589)
T ss_pred             ccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            48999999999999999999999999999987654

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.19  E-value=2.7e-06  Score=68.17  Aligned_cols=38  Identities=18%  Similarity=0.354  Sum_probs=34.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT   40 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~   40 (143)
                      .+|+|||+|.+|+++|+.+++.|.+|.|+|+.+..||.
T Consensus        12 ~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~   49 (584)
T PRK12835         12 VDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS   49 (584)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence            47999999999999999999999999999998876653

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.19  E-value=2.6e-06  Score=68.06  Aligned_cols=36  Identities=28%  Similarity=0.484  Sum_probs=32.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      .+|+|||+|.+|++||+.+++.|.+|+|+|+.+..+
T Consensus         6 ~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~   41 (566)
T PRK06452          6 YDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTR   41 (566)
T ss_pred             CcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence            589999999999999999999999999999986543

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.19  E-value=2.4e-06  Score=68.22  Aligned_cols=34  Identities=29%  Similarity=0.440  Sum_probs=31.5

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +|+|||+|++|++||+.+++.|.+|+|+|+.+..
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~   34 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPT   34 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            5899999999999999999999999999997653

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=98.19  E-value=3.4e-06  Score=63.45  Aligned_cols=42  Identities=17%  Similarity=0.187  Sum_probs=38.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      ++|+|||+|++|+-+|..|.++  +.+|+|||+.+.++|...|+
T Consensus        21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG   64 (468)
T KOG1800|consen   21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG   64 (468)
T ss_pred             ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec
Confidence            5899999999999999998874  78999999999999998876

>PLN02546 glutathione reductase

Probab=98.18  E-value=2.9e-06  Score=67.65  Aligned_cols=42  Identities=31%  Similarity=0.293  Sum_probs=36.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC---------CCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERA---------KGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~---------~~~Gg~~~~~   44 (143)
                      .+|+|||+|++|+.+|..+++.|.+|.|+|+.         ..+||+|.+.
T Consensus        80 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~  130 (558)
T PLN02546         80 FDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLR  130 (558)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCc
Confidence            47999999999999999999999999999962         3478887653

>PLN02697 lycopene epsilon cyclase

Probab=98.18  E-value=2.5e-06  Score=67.52  Aligned_cols=34  Identities=24%  Similarity=0.309  Sum_probs=31.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||++|+++|..|++.|++|+++|+...
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p  142 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP  142 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCccc
Confidence            5899999999999999999999999999998644

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.18  E-value=3e-06  Score=67.34  Aligned_cols=36  Identities=28%  Similarity=0.392  Sum_probs=33.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      .+|+|||+|++|++||+.+++.|.+|+|+|+.+..+
T Consensus        17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~   52 (541)
T PRK07804         17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDD   52 (541)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCC
Confidence            579999999999999999999999999999987643

>PRK12839 hypothetical protein; Provisional

Probab=98.17  E-value=3.4e-06  Score=67.42  Aligned_cols=41  Identities=22%  Similarity=0.316  Sum_probs=36.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .+|+|||+|.+|+++|+.+++.|.+|+|+|+.+.+||...+
T Consensus         9 ~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~   49 (572)
T PRK12839          9 YDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW   49 (572)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence            47999999999999999999999999999998887765443

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.15  E-value=3.8e-06  Score=64.27  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=30.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC-CC-eEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSRE-GY-LLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~-g~-~v~v~Er~~~   36 (143)
                      .+|+|||||+.|+++|+.|++. |. +|+|+||...
T Consensus        31 ~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~   66 (407)
T TIGR01373        31 YDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL   66 (407)
T ss_pred             CCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence            3799999999999999999985 85 9999999753

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.15  E-value=3.4e-06  Score=65.32  Aligned_cols=35  Identities=17%  Similarity=0.341  Sum_probs=31.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSRE--GYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~   36 (143)
                      |++|+|||||++|+.+|..|++.  +++|+|+|+.+.
T Consensus         1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~   37 (438)
T PRK13512          1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD   37 (438)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            46899999999999999999876  679999999865

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.14  E-value=2.9e-06  Score=70.14  Aligned_cols=34  Identities=35%  Similarity=0.383  Sum_probs=31.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|||+|..|+-+|..|++.|.+|+++|+.+
T Consensus       140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~  173 (785)
T TIGR02374       140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP  173 (785)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC
Confidence            4689999999999999999999999999999864

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.14  E-value=3.6e-06  Score=67.23  Aligned_cols=41  Identities=15%  Similarity=0.304  Sum_probs=36.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .+|+|||+| +|+++|+.+++.|.+|.|+|+.+.+||...++
T Consensus        17 ~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~   57 (564)
T PRK12845         17 VDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARS   57 (564)
T ss_pred             eCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCc
Confidence            579999999 89999999999999999999998888665443

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.13  E-value=4.1e-06  Score=67.64  Aligned_cols=34  Identities=21%  Similarity=0.387  Sum_probs=31.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||+.|.++|+.|+++|.+|+|+||.+.
T Consensus        72 ~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~  105 (627)
T PLN02464         72 LDVLVVGGGATGAGVALDAATRGLRVGLVEREDF  105 (627)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence            5799999999999999999999999999999754

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.13  E-value=4e-06  Score=67.84  Aligned_cols=35  Identities=29%  Similarity=0.423  Sum_probs=31.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .+|+|||+|.+||+||+.+++.|.+|+|+|+...+
T Consensus        36 ~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~   70 (640)
T PRK07573         36 FDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP   70 (640)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            47999999999999999999999999999986554

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.13  E-value=4.2e-06  Score=67.17  Aligned_cols=35  Identities=26%  Similarity=0.491  Sum_probs=32.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .+|+|||+|.+||+||+.+++.|.+|+|+|+....
T Consensus        13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~   47 (591)
T PRK07057         13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPT   47 (591)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            47999999999999999999999999999997543

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.13  E-value=5e-06  Score=66.64  Aligned_cols=41  Identities=29%  Similarity=0.494  Sum_probs=36.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ..+|+|||+|.+|+++|..++++|.+|+|+|+.+..||...
T Consensus        12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~   52 (581)
T PRK06134         12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA   52 (581)
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence            35899999999999999999999999999999887765533

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.12  E-value=4.7e-06  Score=65.42  Aligned_cols=43  Identities=23%  Similarity=0.296  Sum_probs=37.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC-CCeEEEEeeC--------CCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSRE-GYLLVVFERA--------KGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~-g~~v~v~Er~--------~~~Gg~~~~~   44 (143)
                      ..+|+|||+|++|..+|..+++. |.+|.|+|+.        ..+||+|.+.
T Consensus         3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~   54 (486)
T TIGR01423         3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNV   54 (486)
T ss_pred             ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCc
Confidence            35899999999999999999997 8999999984        4689998653

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.12  E-value=4.4e-06  Score=65.64  Aligned_cols=36  Identities=22%  Similarity=0.207  Sum_probs=32.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~G   38 (143)
                      .+|+|||||++|+++|..|++.  +.+|+|+||-+.+|
T Consensus         7 ~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a   44 (497)
T PRK13339          7 KDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA   44 (497)
T ss_pred             CCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence            4799999999999999999998  89999999954544

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.12  E-value=4.6e-06  Score=64.35  Aligned_cols=35  Identities=26%  Similarity=0.429  Sum_probs=32.7

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |..+|+|||+|++|+++|+.|++.|.+|+++|+..
T Consensus         1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            67899999999999999999999999999999864

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.11  E-value=5.1e-06  Score=67.34  Aligned_cols=42  Identities=19%  Similarity=0.401  Sum_probs=37.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC-CCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERA-KGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~-~~~Gg~~~~~   44 (143)
                      .+|+|||+|++|+.+|..+++.|.+|.|+|+. ..+||+|.+.
T Consensus       117 yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~  159 (659)
T PTZ00153        117 YDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNV  159 (659)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEe
Confidence            47999999999999999999999999999974 3699998754

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.11  E-value=4.6e-06  Score=63.62  Aligned_cols=40  Identities=30%  Similarity=0.444  Sum_probs=34.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC------CCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSRE------GYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~------g~~v~v~Er~~~~Gg~~~   42 (143)
                      .+|+|||||++||++|+.|.|.      .++|.|+|+++.+||...
T Consensus        77 ~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gghtl  122 (621)
T KOG2415|consen   77 VDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTL  122 (621)
T ss_pred             ccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCcee
Confidence            3699999999999999999863      468999999999997665

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.09  E-value=5.1e-06  Score=67.02  Aligned_cols=36  Identities=31%  Similarity=0.388  Sum_probs=32.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      .+|+|||+|.+|++||+.+++.|.+|+|+|+.+..+
T Consensus        30 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~   65 (617)
T PTZ00139         30 YDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTR   65 (617)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCC
Confidence            479999999999999999999999999999976643

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.09  E-value=5.3e-06  Score=66.43  Aligned_cols=36  Identities=19%  Similarity=0.394  Sum_probs=32.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC---CeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSREG---YLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g---~~v~v~Er~~~~G   38 (143)
                      .+|+|||+|++|++||+.+++.|   .+|+|+||.+..+
T Consensus         6 ~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~   44 (577)
T PRK06069          6 YDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMR   44 (577)
T ss_pred             cCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCC
Confidence            47999999999999999999998   8999999987644

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.09  E-value=5e-06  Score=65.40  Aligned_cols=35  Identities=26%  Similarity=0.416  Sum_probs=31.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~   37 (143)
                      .+|+|||||+.|+++|..|++.  |.+|+|+||.+.+
T Consensus         6 ~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~   42 (494)
T PRK05257          6 TDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV   42 (494)
T ss_pred             ceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence            4799999999999999999984  7899999997654

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.09  E-value=5.9e-06  Score=63.60  Aligned_cols=37  Identities=24%  Similarity=0.462  Sum_probs=34.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCCCc
Q 038409            2 SCHAALIGAGTAGLGATRELSREG--YLLVVFERAKGLT   38 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~~G   38 (143)
                      +.+|+|||||+.|+++|..|++..  ++|.|+||.+.+|
T Consensus         3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a   41 (429)
T COG0579           3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA   41 (429)
T ss_pred             ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence            458999999999999999999997  9999999988866

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.08  E-value=5.8e-06  Score=65.58  Aligned_cols=39  Identities=15%  Similarity=0.164  Sum_probs=35.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      .+|+|||+|++|+.+|..|.++|++|.++|+....|+.|
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~   39 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK   39 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence            479999999999999999999999999999998877655

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.08  E-value=3.6e-06  Score=65.20  Aligned_cols=35  Identities=23%  Similarity=0.314  Sum_probs=31.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~  182 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDK  182 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            36899999999999999999999999999998653

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.07  E-value=5.8e-06  Score=66.85  Aligned_cols=36  Identities=31%  Similarity=0.409  Sum_probs=32.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      .+|+|||+|++|++||+.+++.|.+|+|+|+....+
T Consensus        51 ~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~   86 (635)
T PLN00128         51 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTR   86 (635)
T ss_pred             cCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCC
Confidence            479999999999999999999999999999976543

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.07  E-value=6e-06  Score=66.27  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=32.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      .+|+|||+|.+||+||+.+++.|.+|+|+|+....+
T Consensus         8 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~   43 (588)
T PRK08958          8 FDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTR   43 (588)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence            479999999999999999999999999999986543

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.06  E-value=6.3e-06  Score=65.97  Aligned_cols=36  Identities=19%  Similarity=0.306  Sum_probs=32.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC-CCc
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK-GLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~-~~G   38 (143)
                      .+|+|||||++|+.||.++++.|.+|.++|+.. .+|
T Consensus         5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG   41 (618)
T PRK05192          5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIG   41 (618)
T ss_pred             ceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccc
Confidence            489999999999999999999999999999974 455

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.06  E-value=6.6e-06  Score=64.56  Aligned_cols=41  Identities=24%  Similarity=0.446  Sum_probs=36.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC-----C---CCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERA-----K---GLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~-----~---~~Gg~~~~   43 (143)
                      .+++|||+|++|+.+|..+++.|.+|.++|+.     .   .+||+|.+
T Consensus         3 yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n   51 (484)
T TIGR01438         3 YDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN   51 (484)
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc
Confidence            58999999999999999999999999999973     1   48998765

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.05  E-value=6.7e-06  Score=64.69  Aligned_cols=34  Identities=21%  Similarity=0.350  Sum_probs=30.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC-C-CeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSRE-G-YLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~-g-~~v~v~Er~~~   36 (143)
                      .+|+|||||+.|+++|..|++. + .+|+|+||.+.
T Consensus        46 ~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~   81 (497)
T PTZ00383         46 YDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD   81 (497)
T ss_pred             ccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence            5899999999999999999986 3 69999999764

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.05  E-value=6.3e-06  Score=63.85  Aligned_cols=36  Identities=19%  Similarity=0.329  Sum_probs=31.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ   39 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg   39 (143)
                      .+|+|||+|.+|++||+.+. .|.+|+|+|+.+..||
T Consensus         5 ~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg   40 (433)
T PRK06175          5 ADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC   40 (433)
T ss_pred             ccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence            58999999999999999984 6999999999877543

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.05  E-value=6.3e-06  Score=66.91  Aligned_cols=35  Identities=29%  Similarity=0.373  Sum_probs=32.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .+|+|||+|.+||+||+.+++.|.+|+|+|+.+..
T Consensus         6 ~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~   40 (657)
T PRK08626          6 TDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK   40 (657)
T ss_pred             ccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence            47999999999999999999999999999987653

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.05  E-value=6.5e-06  Score=63.68  Aligned_cols=35  Identities=23%  Similarity=0.398  Sum_probs=31.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREG--YLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~~   37 (143)
                      |+|+|||||++|+++|..|++.+  .+|+|+|+.+..
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~   37 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV   37 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence            58999999999999999999875  589999998764

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.05  E-value=6.9e-06  Score=66.04  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=32.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .+|+|||+|.+|++||+.+++.|.+|+|+|+....
T Consensus        13 ~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~   47 (598)
T PRK09078         13 YDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPT   47 (598)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            37999999999999999999999999999997653

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.05  E-value=5.7e-06  Score=66.56  Aligned_cols=32  Identities=28%  Similarity=0.470  Sum_probs=30.2

Q ss_pred             EEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            5 AALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         5 v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|||+|++||+||+.+++.|.+|+|+||.+.
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~   32 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDA   32 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCC
Confidence            68999999999999999999999999999874

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.04  E-value=8.9e-06  Score=65.16  Aligned_cols=41  Identities=27%  Similarity=0.366  Sum_probs=36.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .+|+|||+|.+|+++|..+++.|.+|+|+|+.+.+||...+
T Consensus        17 ~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~   57 (578)
T PRK12843         17 FDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT   57 (578)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc
Confidence            57999999999999999999999999999998877765543

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.04  E-value=7.5e-06  Score=61.79  Aligned_cols=42  Identities=24%  Similarity=0.313  Sum_probs=39.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .+|+|||+|++|..||+..+|.|.+..++|++..+||++...
T Consensus        40 ~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnv   81 (506)
T KOG1335|consen   40 YDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNV   81 (506)
T ss_pred             CCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeec
Confidence            579999999999999999999999999999999999998753

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.03  E-value=6.3e-06  Score=68.60  Aligned_cols=34  Identities=35%  Similarity=0.378  Sum_probs=31.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      .++++|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus       145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~  178 (847)
T PRK14989        145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP  178 (847)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence            3689999999999999999999999999999864

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.03  E-value=8.1e-06  Score=70.09  Aligned_cols=38  Identities=24%  Similarity=0.398  Sum_probs=35.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT   40 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~   40 (143)
                      .+|+|||+|.+|++||+.+++.|.+|+|+|+.+..||.
T Consensus       410 ~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~  447 (1167)
T PTZ00306        410 ARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN  447 (1167)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence            57999999999999999999999999999998887754

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.03  E-value=8e-06  Score=65.81  Aligned_cols=35  Identities=29%  Similarity=0.363  Sum_probs=32.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~   37 (143)
                      .+|+|||+|.+|++||+.+++.  |.+|+|+||.+..
T Consensus        12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~   48 (608)
T PRK06854         12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK   48 (608)
T ss_pred             eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence            4799999999999999999998  9999999998753

>PLN02815 L-aspartate oxidase

Probab=98.02  E-value=8.3e-06  Score=65.50  Aligned_cols=36  Identities=22%  Similarity=0.366  Sum_probs=32.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ   39 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg   39 (143)
                      .+|+|||+|.+||++|+.+++.| +|+|+|+.+..||
T Consensus        30 ~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg   65 (594)
T PLN02815         30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES   65 (594)
T ss_pred             cCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence            47999999999999999999999 9999999876543

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.01  E-value=5.4e-06  Score=63.97  Aligned_cols=33  Identities=27%  Similarity=0.469  Sum_probs=28.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHH--------------CCCeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSR--------------EGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~--------------~g~~v~v~Er~~   35 (143)
                      ++|+|||||+.|+-.|..|.+              .+.+|+++++.+
T Consensus       174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~  220 (424)
T PTZ00318        174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGS  220 (424)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCC
Confidence            389999999999999998875              367899999764

>TIGR00551 nadB L-aspartate oxidase

Probab=98.00  E-value=9.6e-06  Score=63.69  Aligned_cols=35  Identities=34%  Similarity=0.654  Sum_probs=31.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      .+|+|||+|++|++||+.+++.|. |+|+||.+..+
T Consensus         3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~   37 (488)
T TIGR00551         3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTE   37 (488)
T ss_pred             ccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCC
Confidence            579999999999999999999997 99999986644

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.99  E-value=1e-05  Score=64.79  Aligned_cols=36  Identities=22%  Similarity=0.369  Sum_probs=31.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSREG--YLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~~G   38 (143)
                      .+|+|||+|++|++||+.+++.|  .+|+|+||.+..|
T Consensus         4 ~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~g   41 (575)
T PRK05945          4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIR   41 (575)
T ss_pred             ccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCc
Confidence            47999999999999999999874  7999999976544

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.98  E-value=1e-05  Score=64.34  Aligned_cols=33  Identities=27%  Similarity=0.359  Sum_probs=30.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||+|.+|++||+.+ +.|.+|+|+|+.+.
T Consensus         8 ~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~   40 (543)
T PRK06263          8 TDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF   40 (543)
T ss_pred             cCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence            4799999999999999999 89999999999764

>PRK08275 putative oxidoreductase; Provisional

Probab=97.98  E-value=1e-05  Score=64.50  Aligned_cols=34  Identities=26%  Similarity=0.359  Sum_probs=31.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~   36 (143)
                      .+|+|||+|.+|++||+.+++.  |.+|+|+||.+.
T Consensus        10 ~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~   45 (554)
T PRK08275         10 TDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV   45 (554)
T ss_pred             cCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            4799999999999999999986  689999999876

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.97  E-value=1.9e-05  Score=65.81  Aligned_cols=35  Identities=23%  Similarity=0.366  Sum_probs=30.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC----CCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSRE----GYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~----g~~v~v~Er~~~   36 (143)
                      .++|+|||+|++|+.+|..|++.    +++|+|+++.+.
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~   41 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPR   41 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCC
Confidence            45999999999999999999764    579999998765

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.96  E-value=1e-05  Score=62.31  Aligned_cols=35  Identities=20%  Similarity=0.394  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|.+|+.+|..|++.|.+|+++++.+.
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  171 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER  171 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence            36899999999999999999999999999998643

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.96  E-value=1e-05  Score=64.53  Aligned_cols=36  Identities=22%  Similarity=0.242  Sum_probs=31.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ   39 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg   39 (143)
                      .+|+|||+|.+|++||+.+. .|.+|+|+|+.+..||
T Consensus        10 ~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg   45 (553)
T PRK07395         10 FDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS   45 (553)
T ss_pred             CCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence            47999999999999999996 5999999999876543

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.96  E-value=1.4e-05  Score=59.35  Aligned_cols=36  Identities=31%  Similarity=0.495  Sum_probs=32.7

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |..+|+|||||++|++++++|+++|.++.|+-+...
T Consensus         1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs   36 (421)
T COG3075           1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS   36 (421)
T ss_pred             CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence            677999999999999999999999999999987543

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.95  E-value=1.1e-05  Score=64.74  Aligned_cols=37  Identities=24%  Similarity=0.383  Sum_probs=32.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCce
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLTQ   39 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~Gg   39 (143)
                      .+|+|||+|++||+||+.+++.  |.+|+|+||.+..+|
T Consensus         5 ~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g   43 (582)
T PRK09231          5 ADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS   43 (582)
T ss_pred             eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence            5799999999999999999987  479999999866543

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.93  E-value=1.2e-05  Score=61.35  Aligned_cols=35  Identities=20%  Similarity=0.375  Sum_probs=27.7

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEE-eeCCCCc
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVF-ERAKGLT   38 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~-Er~~~~G   38 (143)
                      +|+|||||.+|+.||+++++.|.+|.+| ++.+.+|
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~   36 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIG   36 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccc
Confidence            5899999999999999999999999999 4443343

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.93  E-value=1.4e-05  Score=64.34  Aligned_cols=33  Identities=30%  Similarity=0.526  Sum_probs=30.1

Q ss_pred             cEEEEcCCHHHHHHHHHHH----HCCCeEEEEeeCCC
Q 038409            4 HAALIGAGTAGLGATRELS----REGYLLVVFERAKG   36 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~----~~g~~v~v~Er~~~   36 (143)
                      +|+|||+|++||+||+.++    +.|.+|+|+|+...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence            5899999999999999998    67999999999765

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.92  E-value=1.4e-05  Score=63.99  Aligned_cols=37  Identities=24%  Similarity=0.319  Sum_probs=32.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCce
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLTQ   39 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~Gg   39 (143)
                      .+|+|||+|++|++||+.+++.  |.+|+|+||.+..++
T Consensus         4 ~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~   42 (580)
T TIGR01176         4 HDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS   42 (580)
T ss_pred             eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence            4799999999999999999987  579999999876554

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.91  E-value=1.4e-05  Score=58.57  Aligned_cols=33  Identities=24%  Similarity=0.412  Sum_probs=28.3

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCC
Q 038409            4 HAALIGAGTAGLGATRELSREG-YLLVVFERAKG   36 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~   36 (143)
                      +++|||+|.+|..+|..|++.+ .+|+|+|+.+.
T Consensus         2 D~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~   35 (296)
T PF00732_consen    2 DYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR   35 (296)
T ss_dssp             EEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence            6899999999999999999997 69999998765

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.91  E-value=1.8e-05  Score=60.04  Aligned_cols=36  Identities=19%  Similarity=0.349  Sum_probs=31.4

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSRE--GYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~   36 (143)
                      |+++|+|||||++|+.+|..|++.  ..+++|+++.+.
T Consensus         1 m~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~   38 (377)
T PRK04965          1 MSNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG   38 (377)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            778999999999999999999875  458999987654

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.91  E-value=1.6e-05  Score=62.88  Aligned_cols=35  Identities=23%  Similarity=0.484  Sum_probs=31.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      .+|+|||+|.+|++||+.+++ |.+|+|+|+.+..+
T Consensus         4 ~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~   38 (510)
T PRK08071          4 ADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRN   38 (510)
T ss_pred             cCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCC
Confidence            589999999999999999976 89999999987644

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.89  E-value=2.3e-05  Score=61.76  Aligned_cols=40  Identities=23%  Similarity=0.417  Sum_probs=35.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      ..+|+|||||+.|+.+|..++.+|++|.++|+.+-..|+-
T Consensus        12 ~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTS   51 (532)
T COG0578          12 EFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTS   51 (532)
T ss_pred             CCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCccc
Confidence            3589999999999999999999999999999987755443

>PLN02507 glutathione reductase

Probab=97.86  E-value=2.6e-05  Score=61.53  Aligned_cols=34  Identities=18%  Similarity=0.215  Sum_probs=31.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      .++|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~  236 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE  236 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC
Confidence            4689999999999999999999999999999864

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.86  E-value=3.1e-05  Score=60.53  Aligned_cols=35  Identities=14%  Similarity=0.278  Sum_probs=31.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++++|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~  211 (466)
T PRK07845        177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR  211 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            36899999999999999999999999999998643

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.85  E-value=2.5e-05  Score=62.05  Aligned_cols=36  Identities=25%  Similarity=0.445  Sum_probs=31.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ   39 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg   39 (143)
                      .+|+|||+|.+|+++|+.+++. .+|+|+|+.+..||
T Consensus         9 ~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g   44 (536)
T PRK09077          9 CDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG   44 (536)
T ss_pred             CCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence            4799999999999999999886 89999999876443

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=97.84  E-value=2.2e-05  Score=59.43  Aligned_cols=34  Identities=29%  Similarity=0.494  Sum_probs=31.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||.+|.+.|.+|.+.|.+|.|+||.-+
T Consensus        46 ~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~   79 (509)
T KOG1298|consen   46 ADVIIVGAGVAGSALAYALAKDGRRVHVIERDLS   79 (509)
T ss_pred             ccEEEECCcchHHHHHHHHhhCCcEEEEEecccc
Confidence            3699999999999999999999999999999643

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.84  E-value=2.6e-05  Score=62.61  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=30.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .+|+|||+|++|+++|+.+++. .+|+|+|+.+..
T Consensus         6 ~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~   39 (583)
T PRK08205          6 YDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPT   39 (583)
T ss_pred             ccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCC
Confidence            3799999999999999999886 899999997653

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.83  E-value=4.9e-05  Score=63.00  Aligned_cols=33  Identities=21%  Similarity=0.354  Sum_probs=28.3

Q ss_pred             EEEEcCCHHHHHHHHHHHHC---CCeEEEEeeCCCC
Q 038409            5 AALIGAGTAGLGATRELSRE---GYLLVVFERAKGL   37 (143)
Q Consensus         5 v~IIGaG~~Gl~~A~~L~~~---g~~v~v~Er~~~~   37 (143)
                      |+|||+|++|+.+|..|++.   +++|+|+++.+..
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~   36 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP   36 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence            58999999999999998864   5799999987653

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.81  E-value=2.6e-05  Score=60.82  Aligned_cols=33  Identities=30%  Similarity=0.491  Sum_probs=27.5

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCC---CeEEEEeeCCC
Q 038409            4 HAALIGAGTAGLGATRELSREG---YLLVVFERAKG   36 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g---~~v~v~Er~~~   36 (143)
                      +|+|||||++|..+|..|++.+   ++|+|+|+...
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~   36 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI   36 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence            6999999999999999999988   89999998754

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.80  E-value=1.3e-05  Score=61.32  Aligned_cols=33  Identities=18%  Similarity=0.224  Sum_probs=28.7

Q ss_pred             CCCeEEcCceEEEeecceEEEccCcE-EEeeeEeC
Q 038409          110 YNNMLLYSMIESIHENGSVVIRIQRV-IFTDIIQH  143 (143)
Q Consensus       110 ~~~v~~~~~v~~~~~~~~v~~~dG~~-~~aD~vI~  143 (143)
                      ..+|.++..|+++++++ |++.+|.+ +++|.||+
T Consensus       223 GV~v~l~~~Vt~v~~~~-v~~~~g~~~I~~~tvvW  256 (405)
T COG1252         223 GVEVLLGTPVTEVTPDG-VTLKDGEEEIPADTVVW  256 (405)
T ss_pred             CCEEEcCCceEEECCCc-EEEccCCeeEecCEEEE
Confidence            45777888899999998 99999985 99999985

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.79  E-value=2.9e-05  Score=59.96  Aligned_cols=35  Identities=23%  Similarity=0.327  Sum_probs=31.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||||.+|+.+|..|.+.+++|+|+++++.
T Consensus        10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~   44 (424)
T PTZ00318         10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH   44 (424)
T ss_pred             CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence            36899999999999999999877899999998765

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.76  E-value=4.8e-05  Score=60.75  Aligned_cols=35  Identities=29%  Similarity=0.438  Sum_probs=32.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .+|+|||+|.+||.||+.+++.|.+|.|+|+....
T Consensus         7 ~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~   41 (562)
T COG1053           7 FDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPK   41 (562)
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccC
Confidence            48999999999999999999999999999987663

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.75  E-value=4e-05  Score=51.39  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=30.7

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ||+|+|||..|.++|..|+++|++|+++.|.+.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~   33 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEE   33 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            699999999999999999999999999998643

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.74  E-value=6.2e-05  Score=56.29  Aligned_cols=38  Identities=29%  Similarity=0.484  Sum_probs=33.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC--Ccee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG--LTQT   40 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~--~Gg~   40 (143)
                      .+|+|||||.+||.+|..|+.+|.+|.|+|+...  +||.
T Consensus         6 ~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ   45 (552)
T COG3573           6 ADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ   45 (552)
T ss_pred             ccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence            4799999999999999999999999999998765  6644

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.74  E-value=4.3e-05  Score=64.20  Aligned_cols=34  Identities=32%  Similarity=0.522  Sum_probs=31.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||+|.+|+++|+.+++.|.+|+|+|+.+.
T Consensus        14 ~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         14 CDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            4799999999999999999999999999999764

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.69  E-value=1.8e-05  Score=57.73  Aligned_cols=37  Identities=19%  Similarity=0.286  Sum_probs=32.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC------CeEEEEeeCCCCc
Q 038409            2 SCHAALIGAGTAGLGATRELSREG------YLLVVFERAKGLT   38 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g------~~v~v~Er~~~~G   38 (143)
                      .++|.|||||+.|.++|..|.+++      +++++||.+...|
T Consensus        10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~   52 (380)
T KOG2852|consen   10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAG   52 (380)
T ss_pred             ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccc
Confidence            478999999999999999999987      7999999876644

>PRK02106 choline dehydrogenase; Validated

Probab=97.69  E-value=5.5e-05  Score=60.40  Aligned_cols=33  Identities=27%  Similarity=0.384  Sum_probs=30.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHH-CCCeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSR-EGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~-~g~~v~v~Er~~   35 (143)
                      .+++|||+|.+|+.+|..|++ .|++|+|+|+.+
T Consensus         6 ~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          6 YDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             CcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            479999999999999999999 799999999974

>TIGR03452 mycothione_red mycothione reductase

Probab=97.69  E-value=8.5e-05  Score=57.87  Aligned_cols=40  Identities=15%  Similarity=0.189  Sum_probs=33.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      ..+++|||+|++|..+|.  ++.|.+|.++|+ ..+||+|.+.
T Consensus         2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~-~~~GGtC~n~   41 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEK-GTFGGTCLNV   41 (452)
T ss_pred             CcCEEEECCCHHHHHHHH--HHCCCeEEEEeC-CCCCCeeecc
Confidence            358999999999998854  457999999997 5689998754

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.67  E-value=7.7e-05  Score=56.55  Aligned_cols=39  Identities=26%  Similarity=0.392  Sum_probs=36.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      ++++|||+|..|+.+|..|++.|++|+++|+.+.+++..
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~  175 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL  175 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh
Confidence            689999999999999999999999999999999877554

>PRK07846 mycothione reductase; Reviewed

Probab=97.66  E-value=6.8e-05  Score=58.42  Aligned_cols=39  Identities=15%  Similarity=0.199  Sum_probs=32.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .+++|||+|++|..+|..  +.|.+|.++|+ ..+||+|.+.
T Consensus         2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~   40 (451)
T PRK07846          2 YDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNV   40 (451)
T ss_pred             CCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCc
Confidence            579999999999988765  46999999997 4689988754

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.66  E-value=4.4e-05  Score=59.03  Aligned_cols=34  Identities=35%  Similarity=0.456  Sum_probs=30.4

Q ss_pred             EEcCCHHHHHHHHHHHHCCCeEEEEeeCCC--Ccee
Q 038409            7 LIGAGTAGLGATRELSREGYLLVVFERAKG--LTQT   40 (143)
Q Consensus         7 IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~--~Gg~   40 (143)
                      |||+|++|+++|+.+++.|.+|+|+||.+.  .||.
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~   36 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGN   36 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcC
Confidence            799999999999999999999999999875  4543

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=97.64  E-value=5.1e-05  Score=57.36  Aligned_cols=31  Identities=29%  Similarity=0.383  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409           12 TAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus        12 ~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++||+||..|+++|++|+|||+++.+||.+.
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~   31 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIR   31 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCcceE
Confidence            6899999999999999999999999997754

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=97.63  E-value=7.2e-05  Score=55.69  Aligned_cols=34  Identities=26%  Similarity=0.460  Sum_probs=31.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ..|+|||||+-|+++|..|+++|.++.++||.+-
T Consensus         8 ~~viiVGAGVfG~stAyeLaK~g~killLeqf~~   41 (399)
T KOG2820|consen    8 RDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPL   41 (399)
T ss_pred             eeEEEEcccccchHHHHHHHhcCCeEEEEeccCC
Confidence            4799999999999999999999999999999765

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.61  E-value=0.0001  Score=55.15  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=32.9

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |+++|+|||+|..|...|..|++.|++|+++.|.+
T Consensus         1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            77899999999999999999999999999999864

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.59  E-value=0.00012  Score=58.82  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=31.3

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +|+|||||++|+.+|.++++.|.+|+++|+....
T Consensus         2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~   35 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDT   35 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEeccccc
Confidence            6999999999999999999999999999997543

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR01810 betA choline dehydrogenase

Probab=97.58  E-value=8.2e-05  Score=59.08  Aligned_cols=32  Identities=28%  Similarity=0.373  Sum_probs=29.7

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCC
Q 038409            4 HAALIGAGTAGLGATRELSREG-YLLVVFERAK   35 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~   35 (143)
                      +++|||+|.+|+.+|..|++.+ ++|.|+|+.+
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~   33 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG   33 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence            5899999999999999999997 7999999975

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.56  E-value=0.00013  Score=56.29  Aligned_cols=34  Identities=24%  Similarity=0.425  Sum_probs=31.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||+|++|+++|+.|.+.|.++.++|+...
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~   34 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS   34 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc
Confidence            3799999999999999999999999999998643

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=97.55  E-value=0.00012  Score=50.27  Aligned_cols=33  Identities=36%  Similarity=0.696  Sum_probs=28.8

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|||+|..|...|..++..|++|++|++++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            689999999999999999999999999998655

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.55  E-value=0.0001  Score=58.34  Aligned_cols=32  Identities=31%  Similarity=0.371  Sum_probs=28.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||+|++|++||+.++  +.+|+|+|+.+.
T Consensus        10 ~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~   41 (513)
T PRK07512         10 GRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL   41 (513)
T ss_pred             CCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence            57999999999999999986  569999999875

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.54  E-value=0.00016  Score=56.74  Aligned_cols=34  Identities=21%  Similarity=0.354  Sum_probs=31.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|||+|.+|+.+|..|++.|++|+++|+++
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4689999999999999999999999999999764

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.50  E-value=0.00015  Score=50.07  Aligned_cols=34  Identities=24%  Similarity=0.361  Sum_probs=27.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|+|||.|..|+.+|..|++.|++|+.||..+.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            6899999999999999999999999999997655

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.46  E-value=0.00026  Score=54.87  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=33.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  192 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI  192 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            478999999999999999999999999999997653

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.45  E-value=0.00016  Score=54.50  Aligned_cols=33  Identities=21%  Similarity=0.322  Sum_probs=28.8

Q ss_pred             cEEEEcCCHHHHHHHHHHHHC---CCeEEEEeeCCC
Q 038409            4 HAALIGAGTAGLGATRELSRE---GYLLVVFERAKG   36 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~---g~~v~v~Er~~~   36 (143)
                      +|+|||||++|+.+|..|+++   +++|+|+|+++.
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~   36 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST   36 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence            589999999999999999643   689999998765

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.43  E-value=0.00021  Score=52.96  Aligned_cols=34  Identities=24%  Similarity=0.340  Sum_probs=31.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|.|||+|..|...|..|+++|++|++|++++.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            5899999999999999999999999999998754

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=97.42  E-value=0.00019  Score=53.76  Aligned_cols=34  Identities=32%  Similarity=0.548  Sum_probs=30.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC----CCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSRE----GYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~----g~~v~v~Er~~~   36 (143)
                      ..|+|||+|-.|.+.|..|.++    |++|+|+||.+.
T Consensus        87 ~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt  124 (509)
T KOG2853|consen   87 CDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT  124 (509)
T ss_pred             cCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence            5799999999999999999854    789999999765

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.42  E-value=0.00031  Score=54.77  Aligned_cols=36  Identities=22%  Similarity=0.352  Sum_probs=33.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++++|||||..|+-.|..+++.|.+|||+|+.+.+
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i  208 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI  208 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            678999999999999999999999999999998773

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.41  E-value=0.00033  Score=54.85  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=32.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|.+|+.+|..|++.|.+|+++|+.+.
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~  214 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR  214 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence            47899999999999999999999999999999765

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.38  E-value=0.0003  Score=51.71  Aligned_cols=34  Identities=24%  Similarity=0.388  Sum_probs=31.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||+|..|..+|..|+++|++|++|++++.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            6899999999999999999999999999998654

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.38  E-value=0.00026  Score=55.12  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=33.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|||+|.+|..+|..|.+.|-+|+++.|++.
T Consensus       175 GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~  209 (443)
T COG2072         175 GKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP  209 (443)
T ss_pred             CCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence            68999999999999999999999999999999876

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.35  E-value=0.00033  Score=52.35  Aligned_cols=34  Identities=29%  Similarity=0.382  Sum_probs=31.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||+|..|...|..++..|++|++|++.+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            6899999999999999999999999999998654

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.34  E-value=0.00031  Score=52.32  Aligned_cols=38  Identities=26%  Similarity=0.555  Sum_probs=34.4

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      .|+|||+|.+||+++..+...|-.|+++|++..+||.-
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS   48 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS   48 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence            48999999999999999999988899999999988654

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.34  E-value=0.00034  Score=51.41  Aligned_cols=34  Identities=29%  Similarity=0.521  Sum_probs=31.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||+|..|...|..|++.|++|++|++.+.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            4899999999999999999999999999998765

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.34  E-value=0.00042  Score=53.95  Aligned_cols=36  Identities=19%  Similarity=0.295  Sum_probs=33.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|.+|+.+|..|++.|.+|+++|+.+.+
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  205 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI  205 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence            478999999999999999999999999999997753

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.33  E-value=0.00029  Score=52.92  Aligned_cols=68  Identities=24%  Similarity=0.378  Sum_probs=47.4

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeecCCCccCccCCccccccccccceeeeeeccccC
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVLTALSGQIYIGEIMNFREYPFL   76 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   76 (143)
                      +-+|||||.+|+++|+..+..|.++.+.|..-.+||+|...   ++-|..+.  |..+.|..++.+-.+|.|+
T Consensus        22 DylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~---GCVPKKvm--~~~a~~~~~~~da~~yG~~   89 (478)
T KOG0405|consen   22 DYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNV---GCVPKKVM--WYAADYSEEMEDAKDYGFP   89 (478)
T ss_pred             ceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEee---ccccceeE--EehhhhhHHhhhhhhcCCc
Confidence            57899999999999999999999999999866799998843   23333333  4444443444333344333

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.32  E-value=0.00029  Score=56.20  Aligned_cols=33  Identities=27%  Similarity=0.446  Sum_probs=30.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      .+++|||+|.+|..+|..|++.|.+|+|+|+..
T Consensus         8 ~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           8 YDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             CCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            489999999999999999998899999999974

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.31  E-value=0.00051  Score=53.55  Aligned_cols=36  Identities=17%  Similarity=0.247  Sum_probs=32.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  207 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI  207 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence            478999999999999999999999999999997663

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.31  E-value=0.0004  Score=50.97  Aligned_cols=34  Identities=15%  Similarity=0.316  Sum_probs=31.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||+|..|...|..|++.|++|+++++++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE   37 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            6899999999999999999999999999998653

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.28  E-value=0.00051  Score=53.82  Aligned_cols=36  Identities=22%  Similarity=0.235  Sum_probs=33.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++++|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i  209 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV  209 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence            468999999999999999999999999999998753

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.27  E-value=0.00055  Score=53.36  Aligned_cols=36  Identities=17%  Similarity=0.177  Sum_probs=33.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|..|+-+|..|++.|.+|+++|+.+.+
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i  201 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV  201 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            478999999999999999999999999999998753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.27  E-value=0.0004  Score=50.97  Aligned_cols=34  Identities=18%  Similarity=0.354  Sum_probs=31.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||+|..|..+|..|+++|++|+++++++.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            6899999999999999999999999999998654

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.27  E-value=0.00058  Score=53.21  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=33.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  210 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL  210 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            478999999999999999999999999999998753

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=97.26  E-value=0.00058  Score=50.64  Aligned_cols=35  Identities=29%  Similarity=0.370  Sum_probs=32.3

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |.|+|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus         1 ~~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          1 MSMTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             CCceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            46899999999999999999999999999999964

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.26  E-value=0.00045  Score=53.84  Aligned_cols=33  Identities=36%  Similarity=0.605  Sum_probs=30.7

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|||.|.+|+++|..|.+.|++|+++|++..
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~   34 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS   34 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            699999999999999999999999999998654

>PRK07846 mycothione reductase; Reviewed

Probab=97.26  E-value=0.00061  Score=53.15  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=32.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~  200 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR  200 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            47899999999999999999999999999999765

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.26  E-value=0.00061  Score=53.34  Aligned_cols=36  Identities=31%  Similarity=0.376  Sum_probs=33.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i  209 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI  209 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            478999999999999999999999999999987653

>TIGR02053 MerA mercuric reductase

Probab=97.26  E-value=0.00058  Score=53.31  Aligned_cols=36  Identities=25%  Similarity=0.473  Sum_probs=32.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  201 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL  201 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence            368999999999999999999999999999998653

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.26  E-value=0.00067  Score=50.42  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      .++|+|||+|..|...|..|++.|++|+++-|.+
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            4689999999999999999999999999999865

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.23  E-value=0.00066  Score=52.98  Aligned_cols=36  Identities=25%  Similarity=0.324  Sum_probs=32.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++++|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l  205 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL  205 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            368999999999999999999999999999997663

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.23  E-value=0.00072  Score=45.53  Aligned_cols=35  Identities=29%  Similarity=0.601  Sum_probs=30.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |++|.+||-|..|..+|..|.++|++|.+|+|.+.
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~   35 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE   35 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence            47999999999999999999999999999998744

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=97.23  E-value=0.00052  Score=53.05  Aligned_cols=34  Identities=15%  Similarity=0.218  Sum_probs=32.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||.|..|+.+|..|+++|++|+.|++.+.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            7899999999999999999999999999998665

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.23  E-value=0.00067  Score=52.85  Aligned_cols=36  Identities=39%  Similarity=0.566  Sum_probs=33.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  204 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI  204 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence            478999999999999999999999999999998764

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.22  E-value=0.00052  Score=50.47  Aligned_cols=34  Identities=21%  Similarity=0.488  Sum_probs=31.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||+|..|...|..|++.|++|+++++++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            5899999999999999999999999999998654

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.22  E-value=0.00067  Score=52.71  Aligned_cols=34  Identities=21%  Similarity=0.420  Sum_probs=31.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|+|+|+|+|.+|+.+|..|++.|++|+++++..
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            5799999999999999999999999999999864

>PRK06370 mercuric reductase; Validated

Probab=97.21  E-value=0.00072  Score=52.78  Aligned_cols=36  Identities=33%  Similarity=0.460  Sum_probs=33.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~  206 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL  206 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence            478999999999999999999999999999998764

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.21  E-value=0.00058  Score=50.17  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=30.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |+|+|||+|..|...|..|.+.|++|+++.|.+
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            479999999999999999999999999999843

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.20  E-value=0.00046  Score=51.51  Aligned_cols=35  Identities=26%  Similarity=0.423  Sum_probs=31.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+.|.|||||.+|--+|+.++++|+.|.+||=++.
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~   37 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV   37 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence            35799999999999999999999999999996654

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.18  E-value=0.00079  Score=52.81  Aligned_cols=36  Identities=28%  Similarity=0.359  Sum_probs=32.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  218 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF  218 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence            478999999999999999999999999999997653

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.17  E-value=0.00011  Score=51.70  Aligned_cols=39  Identities=23%  Similarity=0.433  Sum_probs=33.0

Q ss_pred             cEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCc-eeee
Q 038409            4 HAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLT-QTHL   42 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~G-g~~~   42 (143)
                      +|+|||||.+||++|+....+  ..+|.|+|++-..| |.|.
T Consensus        78 DvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL  119 (328)
T KOG2960|consen   78 DVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL  119 (328)
T ss_pred             ceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc
Confidence            699999999999999999855  56899999987765 6675

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.16  E-value=0.00084  Score=52.49  Aligned_cols=35  Identities=20%  Similarity=0.232  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~  206 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR  206 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            46899999999999999999999999999998765

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.16  E-value=0.00071  Score=49.82  Aligned_cols=31  Identities=26%  Similarity=0.318  Sum_probs=29.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFER   33 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er   33 (143)
                      |+|+|||+|..|...|..|++.|++|+++.|
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            4799999999999999999999999999998

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.16  E-value=0.00069  Score=49.56  Aligned_cols=34  Identities=29%  Similarity=0.472  Sum_probs=31.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||+|..|...|..|++.|++|+++++++.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            5899999999999999999999999999996544

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=97.16  E-value=0.00072  Score=50.20  Aligned_cols=34  Identities=26%  Similarity=0.409  Sum_probs=31.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|.|||+|.-|...|..|++.|++|+++.|.+.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~   35 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPE   35 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            6899999999999999999999999999998643

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.14  E-value=0.00075  Score=47.97  Aligned_cols=34  Identities=38%  Similarity=0.601  Sum_probs=31.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+++|||+|.-|...|..|.+.|++|+++|+.+.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            6899999999999999999999999999997654

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.13  E-value=0.00045  Score=53.86  Aligned_cols=32  Identities=28%  Similarity=0.466  Sum_probs=29.4

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|||+|++||++|+.|.+. ++|+|+-|.+.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~   40 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL   40 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence            799999999999999999998 99999988655

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=97.12  E-value=0.0005  Score=53.16  Aligned_cols=40  Identities=33%  Similarity=0.459  Sum_probs=35.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .+++|||+|..||++|..|++-|-+|.++||+...||.-.
T Consensus        15 ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaav   54 (561)
T KOG4254|consen   15 YDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAV   54 (561)
T ss_pred             cceEEecCCccchhHHHHHHhcCcceEEEEEeeecCccee
Confidence            4789999999999999999999999999999977776543

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.12  E-value=0.00099  Score=51.94  Aligned_cols=34  Identities=21%  Similarity=0.300  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|||+|..|+.+|..|.+.|.+|+++++++
T Consensus       272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            3789999999999999999999999999999874

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=97.11  E-value=0.00054  Score=50.29  Aligned_cols=36  Identities=22%  Similarity=0.168  Sum_probs=29.6

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCC-------CeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREG-------YLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g-------~~v~v~Er~~~   36 (143)
                      ++++|+|||+|..|++.|.++.+..       .+|++++-+..
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~   44 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT   44 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence            3579999999999999999998843       57899876544

>PLN02785 Protein HOTHEAD

Probab=97.10  E-value=0.00077  Score=54.30  Aligned_cols=32  Identities=28%  Similarity=0.509  Sum_probs=29.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      .+++|||+|.+|+.+|..|.+ +.+|.|+|+.+
T Consensus        56 yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~   87 (587)
T PLN02785         56 YDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG   87 (587)
T ss_pred             CCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence            579999999999999999999 68999999975

>TIGR03452 mycothione_red mycothione reductase

Probab=97.10  E-value=0.001  Score=51.93  Aligned_cols=36  Identities=17%  Similarity=0.247  Sum_probs=33.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++++|||+|..|+..|..|++.|.+|+++|+.+.+
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l  204 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL  204 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            478999999999999999999999999999987653

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.10  E-value=0.00079  Score=52.65  Aligned_cols=41  Identities=24%  Similarity=0.250  Sum_probs=34.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC----CCeEEEEeeCCCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSRE----GYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~----g~~v~v~Er~~~~Gg~~~   42 (143)
                      .+++=|||+|+++|++|..|-+.    |-+++|||+.+..||.+-
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsld   46 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLD   46 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCccc
Confidence            46788999999999999999987    448999999888776543

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=97.09  E-value=0.00086  Score=52.97  Aligned_cols=35  Identities=29%  Similarity=0.337  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      -++|+|||+|..|...|..|.++|++|++|++.+.
T Consensus         4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~   38 (495)
T PRK07531          4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE   38 (495)
T ss_pred             cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            46899999999999999999999999999998654

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.09  E-value=0.0012  Score=48.99  Aligned_cols=35  Identities=29%  Similarity=0.358  Sum_probs=32.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .|+|.|||+|..|.+.|..|.+.|++|+++.|...
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            57899999999999999999999999999998653

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.09  E-value=0.00088  Score=50.05  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=31.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|.-|...|..|.+.|++|+++.|.+.
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~   38 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE   38 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            36899999999999999999999999999998643

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.08  E-value=0.0018  Score=50.31  Aligned_cols=33  Identities=15%  Similarity=0.204  Sum_probs=30.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      .+|+++|+|..|+-+|.+|...+.+|+++++.+
T Consensus       214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~  246 (478)
T KOG1336|consen  214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP  246 (478)
T ss_pred             ceEEEECchHHHHHHHHHHHhcCceEEEEccCc
Confidence            579999999999999999999999999999754

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.07  E-value=0.001  Score=49.24  Aligned_cols=34  Identities=35%  Similarity=0.603  Sum_probs=31.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||+|..|...|..|++.|++|+++++++.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~   38 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG   38 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            6899999999999999999999999999997543

>PRK10262 thioredoxin reductase; Provisional

Probab=97.05  E-value=0.0013  Score=48.83  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=32.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.+.+|+++++.+.
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~  180 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG  180 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence            47899999999999999999999999999999764

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.05  E-value=0.0012  Score=52.29  Aligned_cols=36  Identities=31%  Similarity=0.386  Sum_probs=32.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|..|+.+|..|++.+.+|+++|+.+.+
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l  387 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL  387 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC
Confidence            479999999999999999999999999999987654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.04  E-value=0.0011  Score=47.12  Aligned_cols=42  Identities=19%  Similarity=0.167  Sum_probs=34.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC----Cceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG----LTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~----~Gg~~~~~   44 (143)
                      .+|+|||+|+++..+|+.++++..++++||---.    .||.+..+
T Consensus         9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTT   54 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTT   54 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeee
Confidence            3899999999999999999999999999996433    46666544

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.03  E-value=0.0011  Score=48.79  Aligned_cols=36  Identities=33%  Similarity=0.636  Sum_probs=33.0

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |.++|.|||.|..|...|..|.+.|++|.+|++++.
T Consensus         1 ~~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~   36 (296)
T PRK11559          1 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPE   36 (296)
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            678999999999999999999999999999998654

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.03  E-value=0.001  Score=50.20  Aligned_cols=29  Identities=28%  Similarity=0.464  Sum_probs=24.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHH----CC--CeEEEE
Q 038409            3 CHAALIGAGTAGLGATRELSR----EG--YLLVVF   31 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~----~g--~~v~v~   31 (143)
                      ++|+|||+|.+|+.+|..|.+    .|  .+|+++
T Consensus       146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li  180 (364)
T TIGR03169       146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI  180 (364)
T ss_pred             ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence            589999999999999999975    34  478888

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK12831 putative oxidoreductase; Provisional

Probab=97.02  E-value=0.0013  Score=51.62  Aligned_cols=34  Identities=24%  Similarity=0.350  Sum_probs=31.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|||+|..|+.+|..|.+.|.+|+++.+++
T Consensus       281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            4799999999999999999999999999999864

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.01  E-value=0.0016  Score=42.98  Aligned_cols=31  Identities=26%  Similarity=0.373  Sum_probs=29.3

Q ss_pred             EEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            5 AALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         5 v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |+|+|+|..|...|..|++.|++|+++-|..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            7899999999999999999999999999876

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.99  E-value=0.0015  Score=48.79  Aligned_cols=33  Identities=21%  Similarity=0.366  Sum_probs=30.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |+|+|||+|.-|.+.|..|++.|++|+++.|.+
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            479999999999999999999999999999854

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.98  E-value=0.0012  Score=50.20  Aligned_cols=34  Identities=24%  Similarity=0.312  Sum_probs=31.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |||.|||.|.-||+.|.+|++.||+|++++..+.
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~   34 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES   34 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            6899999999999999999999999999997544

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=96.98  E-value=0.0012  Score=48.59  Aligned_cols=34  Identities=18%  Similarity=0.341  Sum_probs=31.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||+|..|...|..|.+.|++|++|++++.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~   38 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA   38 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            6899999999999999999999999999997653

>PTZ00058 glutathione reductase; Provisional

Probab=96.98  E-value=0.0015  Score=52.41  Aligned_cols=35  Identities=17%  Similarity=0.272  Sum_probs=32.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~  271 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR  271 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence            47899999999999999999999999999999765

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.97  E-value=0.0016  Score=51.62  Aligned_cols=36  Identities=31%  Similarity=0.366  Sum_probs=33.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|.+|+.+|..|+..+.+|+++++.+.+
T Consensus       351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l  386 (517)
T PRK15317        351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL  386 (517)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence            478999999999999999999999999999987654

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.94  E-value=0.0021  Score=45.03  Aligned_cols=33  Identities=24%  Similarity=0.353  Sum_probs=30.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +++|+|||||..|...+..|.+.|.+|+|+...
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            579999999999999999999999999999764

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=96.93  E-value=0.002  Score=50.10  Aligned_cols=35  Identities=11%  Similarity=0.109  Sum_probs=32.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++++|||+|..|+.+|..|++.|.+|+++++.+.
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~  200 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL  200 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence            46899999999999999999999999999998765

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.92  E-value=0.0021  Score=49.92  Aligned_cols=36  Identities=19%  Similarity=0.336  Sum_probs=32.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|..|+..|..|++.|.+|+++|+.+.+
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  193 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLF  193 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            468999999999999999999999999999987653

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.91  E-value=0.0018  Score=50.13  Aligned_cols=35  Identities=23%  Similarity=0.278  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|.+|+.+|..|++.|.+|+++++.+.
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~  183 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR  183 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence            36899999999999999999999999999998764

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.90  E-value=0.0019  Score=51.76  Aligned_cols=35  Identities=23%  Similarity=0.222  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++++.+.
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~  177 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD  177 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence            47899999999999999999999999999999764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=96.90  E-value=0.0014  Score=51.88  Aligned_cols=34  Identities=24%  Similarity=0.456  Sum_probs=31.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|.|||+|.-|..+|..|++.|++|++|++++.
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            6899999999999999999999999999998755

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.90  E-value=0.0016  Score=47.23  Aligned_cols=36  Identities=19%  Similarity=0.239  Sum_probs=32.3

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCC---CeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREG---YLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g---~~v~v~Er~~~   36 (143)
                      |+++|.|||+|..|...|..|.+.|   .++.+++|++.
T Consensus         1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~   39 (267)
T PRK11880          1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPE   39 (267)
T ss_pred             CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHH
Confidence            7889999999999999999999998   78999998643

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.90  E-value=0.0013  Score=50.64  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=31.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|.|||.|..|+.+|..|++.|++|+++++.+.
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            4799999999999999999999999999998755

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK06116 glutathione reductase; Validated

Probab=96.89  E-value=0.0021  Score=50.04  Aligned_cols=35  Identities=23%  Similarity=0.270  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++++.+.
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  201 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA  201 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            47899999999999999999999999999998765

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.89  E-value=0.0024  Score=43.21  Aligned_cols=35  Identities=26%  Similarity=0.319  Sum_probs=30.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +.+|+|+|+|..|..|+..|...|++++++|..+.
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~   54 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPE   54 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHH
Confidence            46899999999999999999999999999997643

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.87  E-value=0.0024  Score=46.47  Aligned_cols=35  Identities=17%  Similarity=0.290  Sum_probs=31.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|.+|+.+|..|++.+.+|+++++.+.
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~  175 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDK  175 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcc
Confidence            46899999999999999999999999999998764

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.87  E-value=0.0016  Score=40.57  Aligned_cols=33  Identities=18%  Similarity=0.268  Sum_probs=30.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +++|+|||+|..|..-+..|.+.|.+|+|+-..
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            579999999999999999999999999999765

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.86  E-value=0.0026  Score=43.20  Aligned_cols=33  Identities=12%  Similarity=0.132  Sum_probs=30.0

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +++|+|||+|- +|..+|..|.+.|.++++..|.
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            58999999995 7999999999999999999986

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK13748 putative mercuric reductase; Provisional

Probab=96.85  E-value=0.0022  Score=51.27  Aligned_cols=34  Identities=21%  Similarity=0.376  Sum_probs=31.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|||+|..|+-+|..|++.|.+|+++++..
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~  303 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARST  303 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence            4789999999999999999999999999999853

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.84  E-value=0.0031  Score=41.17  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=31.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYL-LVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~-v~v~Er~~~   36 (143)
                      +++|+|||+|-+|-+++.+|.+.|.+ ++|+-|...
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~   47 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPE   47 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHH
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence            57999999999999999999999986 999988643

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.84  E-value=0.0017  Score=47.44  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=30.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|.|||.|..|.+.|..|++.|++|+++++++.
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~   34 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRES   34 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4799999999999999999999999999998643

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=96.83  E-value=0.00028  Score=57.31  Aligned_cols=32  Identities=38%  Similarity=0.462  Sum_probs=28.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      ++.+|||+|.-|+-+|.+|.+.|.++++++=.
T Consensus       146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~  177 (793)
T COG1251         146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIA  177 (793)
T ss_pred             CCcEEEccchhhhHHHHHHHhCCCceEEEeec
Confidence            46789999999999999999999999998743

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=96.83  E-value=0.0024  Score=52.19  Aligned_cols=36  Identities=25%  Similarity=0.311  Sum_probs=32.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|..|+-.|..|.+.|.+|+++|+.+.+
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l  347 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL  347 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence            468999999999999999999999999999998764

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=96.79  E-value=0.0019  Score=51.16  Aligned_cols=34  Identities=26%  Similarity=0.570  Sum_probs=31.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|.|||+|.-|..+|..|++.|++|+++|+++.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5799999999999999999999999999998765

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.79  E-value=0.0027  Score=47.90  Aligned_cols=34  Identities=21%  Similarity=0.209  Sum_probs=30.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYL-LVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~-v~v~Er~~   35 (143)
                      +++|+|||+|..|+.+|..|.+.|.+ |+|+++++
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            36899999999999999999988986 99999864

>PRK04148 hypothetical protein; Provisional

Probab=96.78  E-value=0.0019  Score=42.21  Aligned_cols=34  Identities=15%  Similarity=0.309  Sum_probs=30.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++++++||.| .|...|..|++.|++|+.+|.++.
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            3679999999 888889999999999999997655

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.78  E-value=0.003  Score=44.16  Aligned_cols=33  Identities=18%  Similarity=0.260  Sum_probs=30.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +++|+|||||-.|...+..|.+.|.+|+|+.+.
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            589999999999999999999999999999764

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.77  E-value=0.0034  Score=42.12  Aligned_cols=31  Identities=19%  Similarity=0.328  Sum_probs=29.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEe
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFE   32 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~E   32 (143)
                      +++|+|||||-.|..-+..|.+.|++|+|+.
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            5799999999999999999999999999994

>PRK14727 putative mercuric reductase; Provisional

Probab=96.75  E-value=0.0029  Score=49.76  Aligned_cols=33  Identities=15%  Similarity=0.326  Sum_probs=30.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++++.
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~  220 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARS  220 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence            478999999999999999999999999999975

>PLN02546 glutathione reductase

Probab=96.74  E-value=0.0033  Score=50.48  Aligned_cols=36  Identities=22%  Similarity=0.213  Sum_probs=32.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .++|+|||+|..|+-.|..|.+.|.+|+++|+.+.+
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~i  287 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKV  287 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccc
Confidence            478999999999999999999999999999987653

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=96.73  E-value=0.0051  Score=41.40  Aligned_cols=35  Identities=26%  Similarity=0.299  Sum_probs=29.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|||-|.-|.+-|..|+..|.+|.+-.|..+
T Consensus         4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s   38 (165)
T PF07991_consen    4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGS   38 (165)
T ss_dssp             TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTC
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCC
Confidence            68999999999999999999999999999988754

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.0015  Score=49.30  Aligned_cols=35  Identities=26%  Similarity=0.318  Sum_probs=30.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|||+|.+|+-+|+.|+-.--.|+++|=.+.
T Consensus       354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e  388 (520)
T COG3634         354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  388 (520)
T ss_pred             CceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence            68999999999999999999876558999996544

>PRK14694 putative mercuric reductase; Provisional

Probab=96.71  E-value=0.003  Score=49.45  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=30.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +++++|||+|..|+.+|..|++.|.+|+++++.
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~  210 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVLARS  210 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence            468999999999999999999999999999974

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.71  E-value=0.0034  Score=46.45  Aligned_cols=35  Identities=23%  Similarity=0.342  Sum_probs=32.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||.|..|..++..|++.|.+|++++|++.
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~  186 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA  186 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            57999999999999999999999999999998753

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.70  E-value=0.003  Score=52.33  Aligned_cols=35  Identities=20%  Similarity=0.365  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYL-LVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~-v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..+.+.|.+ |+++++++.
T Consensus       570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~  605 (752)
T PRK12778        570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE  605 (752)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            47999999999999999999999987 999998653

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=96.70  E-value=0.0035  Score=46.63  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=30.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREG--YLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~   36 (143)
                      |+|.|||+|..|.++|..|.+.|  ..+.++++...
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            47999999999999999999998  48999998654

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.69  E-value=0.0035  Score=48.44  Aligned_cols=35  Identities=26%  Similarity=0.317  Sum_probs=31.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|+|+|..|+.+|..++..|.+|+++|+.+.
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            57899999999999999999999999999998654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.68  E-value=0.0032  Score=49.20  Aligned_cols=34  Identities=18%  Similarity=0.368  Sum_probs=31.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|+|.|.+|+++|..|++.|++|+++|+++
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            4789999999999999999999999999999754

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.68  E-value=0.0037  Score=44.10  Aligned_cols=33  Identities=24%  Similarity=0.460  Sum_probs=30.1

Q ss_pred             CcEEEEc-CCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIG-AGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIG-aG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |+|.||| +|.-|.+.|..|.+.|++|+++.|++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            4799997 79999999999999999999998865

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=96.67  E-value=0.0032  Score=49.64  Aligned_cols=33  Identities=21%  Similarity=0.259  Sum_probs=30.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      .++++|||+|..|+-+|..|++.|.+|+++++.
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            368999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.66  E-value=0.0031  Score=49.95  Aligned_cols=35  Identities=29%  Similarity=0.448  Sum_probs=31.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +.+|+|+|+|..|+.++..++..|.+|.++|.++.
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~  199 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE  199 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998754

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.66  E-value=0.0033  Score=49.36  Aligned_cols=33  Identities=24%  Similarity=0.108  Sum_probs=30.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +++|+|+|.|-+|.++|..|.+.|.+|++.|.+
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~   40 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFC   40 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence            579999999999999999999999999999954

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.64  E-value=0.0033  Score=49.57  Aligned_cols=33  Identities=24%  Similarity=0.304  Sum_probs=30.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +++|+|+|.|.+|++++..|++.|.+|+++|+.
T Consensus        12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            478999999999999999999999999999965

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.64  E-value=0.0041  Score=48.56  Aligned_cols=34  Identities=24%  Similarity=0.378  Sum_probs=31.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~   35 (143)
                      +++|+|||+|..|+.+|..|.+.|. +|+++++++
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            4789999999999999999999998 899999864

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=96.62  E-value=0.0027  Score=52.42  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=31.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||||.-|...|..++..|++|+++|.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5799999999999999999999999999998754

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.62  E-value=0.0047  Score=45.72  Aligned_cols=35  Identities=26%  Similarity=0.419  Sum_probs=30.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      ++||+|||+|..|...|..+...|+ ++.+++..+.
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            4799999999999999999998875 9999998554

>PTZ00052 thioredoxin reductase; Provisional

Probab=96.62  E-value=0.0037  Score=49.47  Aligned_cols=33  Identities=24%  Similarity=0.346  Sum_probs=30.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +++++|||+|..|+-+|..|++.|.+|+++++.
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            368999999999999999999999999999974

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.62  E-value=0.0046  Score=48.10  Aligned_cols=35  Identities=14%  Similarity=0.282  Sum_probs=31.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|+|.|-+|+++|..|++.|++|+++|..+.
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            57899999999999999999999999999997543

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=96.61  E-value=0.0049  Score=45.81  Aligned_cols=34  Identities=26%  Similarity=0.411  Sum_probs=30.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      +||+|||+|.-|..+|..|+..|+ +|+++|..+.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~   36 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG   36 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            689999999999999999999876 8999997544

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.60  E-value=0.0039  Score=47.53  Aligned_cols=33  Identities=18%  Similarity=0.334  Sum_probs=30.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      ++|+|||+|..|+.+|..|.+.|.+|+++++++
T Consensus       168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            579999999999999999999999999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=96.59  E-value=0.0046  Score=48.82  Aligned_cols=36  Identities=11%  Similarity=0.132  Sum_probs=30.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHH---CCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSR---EGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~---~g~~v~v~Er~~~~   37 (143)
                      +++++|||+|..|+-+|..+..   .|.+|+|+|+.+.+
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i  225 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI  225 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence            4789999999999999976554   48999999988763

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=96.58  E-value=0.0033  Score=48.98  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|+|-|.+|+++|..|.+.|++|++++.++.
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~   41 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPA   41 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCC
Confidence            58999999999999999999999999999996554

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=96.57  E-value=0.0031  Score=52.03  Aligned_cols=34  Identities=26%  Similarity=0.370  Sum_probs=31.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||||..|...|..++..|++|+++|.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH  347 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5799999999999999999999999999997654

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.56  E-value=0.0045  Score=48.11  Aligned_cols=34  Identities=18%  Similarity=0.268  Sum_probs=30.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|+|+|-+|+++|..|++.|.+|++.++..
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4689999999999999999999999999998653

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.56  E-value=0.0044  Score=45.65  Aligned_cols=35  Identities=23%  Similarity=0.375  Sum_probs=32.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|+|.|..|..+|..|+..|.+|++++|++.
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~  185 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA  185 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            57899999999999999999999999999998754

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.53  E-value=0.0043  Score=48.80  Aligned_cols=35  Identities=20%  Similarity=0.169  Sum_probs=30.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREG--YLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~   36 (143)
                      +|+|+|||+|..|+.+|..|++.|  ++|+.+|..+.
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            368999999999999999999884  78999997655

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=96.50  E-value=0.0047  Score=45.60  Aligned_cols=34  Identities=29%  Similarity=0.422  Sum_probs=31.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|.|||.|.-|...|..|.+.|++|++|++++.
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~   35 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQ   35 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            5899999999999999999999999999998754

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=96.50  E-value=0.0043  Score=48.66  Aligned_cols=34  Identities=18%  Similarity=0.262  Sum_probs=31.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|+|+|||+|.+|+.+|..|.+.+.+|+++.|+.
T Consensus       204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            5899999999999999999999999999998853

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=96.49  E-value=0.0055  Score=47.77  Aligned_cols=37  Identities=22%  Similarity=0.354  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCc
Q 038409            2 SCHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLT   38 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~G   38 (143)
                      ..+|++||||+.|.+.+..|++-  .+++.||||-+.++
T Consensus         3 ~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A   41 (488)
T PF06039_consen    3 EYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVA   41 (488)
T ss_pred             ceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcch
Confidence            35899999999999999999976  67999999988754

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=96.48  E-value=0.0039  Score=47.85  Aligned_cols=33  Identities=15%  Similarity=0.245  Sum_probs=29.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|+|||.|.-|+.+|..|+. |++|++|++.+.
T Consensus         1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~   33 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPS   33 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence            479999999999999987775 999999998655

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.47  E-value=0.0067  Score=42.32  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=31.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|+|+|+|.|-.|..+|..|.+.|++|+++++++
T Consensus        28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            5789999999999999999999999999998754

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=96.46  E-value=0.0038  Score=50.58  Aligned_cols=40  Identities=25%  Similarity=0.410  Sum_probs=31.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeeCCC-Cceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYL-LVVFERAKG-LTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~-v~v~Er~~~-~Gg~~~   42 (143)
                      -+|+|||+|.+|..+|.+|++.|.+ ..++|+... .|++|.
T Consensus        40 A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwh   81 (856)
T KOG2844|consen   40 ADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWH   81 (856)
T ss_pred             ccEEEEcCCchhHHHHHHHHHccccceEEEeeeeeccccccc
Confidence            4799999999999999999999998 555566443 555554

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=96.45  E-value=0.0089  Score=35.81  Aligned_cols=32  Identities=31%  Similarity=0.552  Sum_probs=29.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC-CCeEEEEee
Q 038409            2 SCHAALIGAGTAGLGATRELSRE-GYLLVVFER   33 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~-g~~v~v~Er   33 (143)
                      .++++|+|+|..|..++..|.+. +.++.+++|
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            47899999999999999999998 678999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.44  E-value=0.0051  Score=45.56  Aligned_cols=35  Identities=31%  Similarity=0.388  Sum_probs=30.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~~   36 (143)
                      .++|+|||+|..|.+.|..|.+.|+  +|.++++++.
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~   42 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAE   42 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence            3689999999999999999999985  8999998653

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=96.43  E-value=0.0032  Score=47.50  Aligned_cols=35  Identities=23%  Similarity=0.275  Sum_probs=26.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREG-YLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~~   37 (143)
                      .++++||.|+++|++|++|.+.+ .++..|||++..
T Consensus         3 ~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f   38 (341)
T PF13434_consen    3 YDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF   38 (341)
T ss_dssp             ESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred             eeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence            47899999999999999999885 899999998763

>PRK08017 oxidoreductase; Provisional

Probab=96.42  E-value=0.0068  Score=43.14  Aligned_cols=35  Identities=31%  Similarity=0.438  Sum_probs=31.5

Q ss_pred             CCCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            1 MSCHAALIGA-GTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         1 ~~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |.++|+|.|| |..|..+|..|.++|++|.++.|+.
T Consensus         1 m~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~   36 (256)
T PRK08017          1 MQKSVLITGCSSGIGLEAALELKRRGYRVLAACRKP   36 (256)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            6678999999 9999999999999999999988764

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.40  E-value=0.0059  Score=47.99  Aligned_cols=33  Identities=33%  Similarity=0.404  Sum_probs=30.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +++|+|+|.|-+|+++|..|.+.|.+|+++++.
T Consensus        15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~   47 (473)
T PRK00141         15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN   47 (473)
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence            478999999999999999999999999999974

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.40  E-value=0.0065  Score=51.62  Aligned_cols=34  Identities=24%  Similarity=0.338  Sum_probs=31.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|||||..|+.+|..+.+.|.+|+++.+++
T Consensus       447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~  480 (944)
T PRK12779        447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT  480 (944)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence            4789999999999999999999999999998764

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.39  E-value=0.0066  Score=46.49  Aligned_cols=35  Identities=26%  Similarity=0.394  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREG-YLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~   36 (143)
                      +++|+|||||-.|..+|..|++++ .+|++-+|+..
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~   36 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE   36 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence            479999999999999999999998 89999999743

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=96.38  E-value=0.0055  Score=45.49  Aligned_cols=35  Identities=29%  Similarity=0.415  Sum_probs=31.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      -++|+|||||.-|-..|..++..|++|++++.++.
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~   37 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPE   37 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHH
Confidence            47999999999999999999998899999998744

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.37  E-value=0.0048  Score=49.59  Aligned_cols=34  Identities=24%  Similarity=0.405  Sum_probs=30.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC-CCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSRE-GYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~-g~~v~v~Er~~~   36 (143)
                      .+.+|||||.+|...|..|.+. .++|.++|+...
T Consensus        58 yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~   92 (623)
T KOG1238|consen   58 YDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGD   92 (623)
T ss_pred             CCEEEECCCchhHHHHHhhccCCCceEEEEecCCC
Confidence            4689999999999999999987 789999999755

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.36  E-value=0.0073  Score=46.59  Aligned_cols=34  Identities=21%  Similarity=0.205  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|+|.|..|..+|..|+..|.+|+++|+.+
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp  228 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP  228 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence            5789999999999999999999999999999765

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.36  E-value=0.0062  Score=46.51  Aligned_cols=34  Identities=21%  Similarity=0.372  Sum_probs=31.1

Q ss_pred             CCcEEEEc-CCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIG-AGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIG-aG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      .++|+||| .|..|-+.|..|++.|++|+++++.+
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            36899999 89999999999999999999999854

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=96.36  E-value=0.006  Score=45.10  Aligned_cols=34  Identities=26%  Similarity=0.449  Sum_probs=31.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|.|||.|..|...|..|.+.|++|.+|+|.+.
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~   34 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD   34 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4799999999999999999999999999998754

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.34  E-value=0.0082  Score=44.57  Aligned_cols=34  Identities=26%  Similarity=0.384  Sum_probs=30.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREG--YLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~   36 (143)
                      ++|+|||+|..|.++|..|...|  .++.++++...
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            48999999999999999999998  48999998654

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=96.33  E-value=0.0051  Score=50.75  Aligned_cols=34  Identities=15%  Similarity=0.251  Sum_probs=30.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHH-HCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELS-REGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~-~~g~~v~v~Er~~~   36 (143)
                      ++|+|||||..|...|..++ ..|++|+++|.++.
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~  344 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ  344 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence            58999999999999999998 88999999997654

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=96.33  E-value=0.0048  Score=51.11  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=31.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||||.-|...|..++..|++|+++|..+.
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~  369 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA  369 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence            5799999999999999999999999999997654

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.32  E-value=0.0086  Score=41.80  Aligned_cols=33  Identities=24%  Similarity=0.407  Sum_probs=30.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~   34 (143)
                      .++|+|||+|--|..+|..|.+.|+ ++++++..
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4689999999999999999999999 69999875

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=96.29  E-value=0.0059  Score=44.84  Aligned_cols=33  Identities=27%  Similarity=0.410  Sum_probs=30.4

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|.|||.|..|...|..|.+.|++|++|+|++.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~   33 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPE   33 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            589999999999999999999999999998754

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.29  E-value=0.0084  Score=44.11  Aligned_cols=34  Identities=26%  Similarity=0.365  Sum_probs=30.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~   35 (143)
                      .++|+|+|+|-+|-+++.+|.+.|. +++|+.|..
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            4689999999999999999999998 799999864

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.29  E-value=0.0089  Score=47.52  Aligned_cols=45  Identities=20%  Similarity=0.270  Sum_probs=34.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeecCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQV   47 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~~~~   47 (143)
                      .+|+|||||.+|+-||.+.++.|.++.++=-+...-|...+.|..
T Consensus         5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaI   49 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAI   49 (621)
T ss_pred             CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeeccccccc
Confidence            489999999999999999999999999987655433344444433

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.25  E-value=0.0059  Score=46.00  Aligned_cols=31  Identities=23%  Similarity=0.435  Sum_probs=28.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFER   33 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er   33 (143)
                      .+.+|||||.+||++|...+..|.+|.+++-
T Consensus        20 yDLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   20 YDLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             ccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            4689999999999999999999999999984

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.22  E-value=0.014  Score=38.40  Aligned_cols=33  Identities=27%  Similarity=0.459  Sum_probs=29.4

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            3 CHAALIGA-GTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      +||+|||+ |.-|-++|..|...+.  ++.++++..
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            58999999 9999999999998865  799999864

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.21  E-value=0.0085  Score=44.79  Aligned_cols=35  Identities=29%  Similarity=0.446  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|+|+|.=|.+.|..|.+.|++|+++-|++.
T Consensus         1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~   35 (329)
T COG0240           1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEE   35 (329)
T ss_pred             CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHH
Confidence            47899999999999999999999999999988655

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.21  E-value=0.0096  Score=46.20  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|+|.|..|..+|..|+..|.+|+++|+.+.
T Consensus       212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~  246 (425)
T PRK05476        212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI  246 (425)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence            57899999999999999999999999999997653

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.20  E-value=0.0076  Score=47.19  Aligned_cols=32  Identities=22%  Similarity=0.494  Sum_probs=29.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +++|+|+|.|.+|.++|..|++ |.+|+++|..
T Consensus         6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~   37 (454)
T PRK01368          6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL   37 (454)
T ss_pred             CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence            4789999999999999999995 9999999954

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=96.20  E-value=0.0071  Score=49.85  Aligned_cols=34  Identities=15%  Similarity=0.260  Sum_probs=30.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHH-HCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELS-REGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~-~~g~~v~v~Er~~~   36 (143)
                      ++|+|||+|..|...|..++ +.|++|+++|.++.
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~  339 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ  339 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            57999999999999999888 58999999998754

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.19  E-value=0.011  Score=38.42  Aligned_cols=33  Identities=24%  Similarity=0.478  Sum_probs=29.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~   34 (143)
                      .++|+|+|+|..|..+|..|.+.|+ ++++++..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            4789999999999999999999998 79999863

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.17  E-value=0.01  Score=42.18  Aligned_cols=33  Identities=30%  Similarity=0.463  Sum_probs=30.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCe---EEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYL---LVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~---v~v~Er~   34 (143)
                      .++|+|+|+|-+|..+|..|.+.|.+   +.+++|.
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            46899999999999999999999974   9999987

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=96.12  E-value=0.0052  Score=45.88  Aligned_cols=36  Identities=33%  Similarity=0.579  Sum_probs=31.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~G   38 (143)
                      .+.+|||||+-|++.|..|.-+  +.+|.|+|+...++
T Consensus        49 ~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la   86 (453)
T KOG2665|consen   49 YDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA   86 (453)
T ss_pred             ccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence            4689999999999999999865  88999999877643

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.12  E-value=0.014  Score=43.75  Aligned_cols=34  Identities=24%  Similarity=0.297  Sum_probs=30.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      +||+|||+|..|.++|..++..|+ ++.++|..+.
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            589999999999999999999886 8999997654

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.10  E-value=0.009  Score=46.74  Aligned_cols=34  Identities=18%  Similarity=0.251  Sum_probs=30.6

Q ss_pred             CCcEEEEcCCHHHHH-HHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLG-ATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~-~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|||.|-+|++ +|..|.+.|++|++.|...
T Consensus         7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~   41 (461)
T PRK00421          7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE   41 (461)
T ss_pred             CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence            368999999999999 6999999999999999754

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=96.10  E-value=0.013  Score=43.97  Aligned_cols=35  Identities=17%  Similarity=0.343  Sum_probs=31.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||.|..|..+|..|+..|.+|..|++.+.
T Consensus       146 g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~  180 (330)
T PRK12480        146 NMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPN  180 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            57899999999999999999999999999997643

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.10  E-value=0.011  Score=39.86  Aligned_cols=35  Identities=29%  Similarity=0.306  Sum_probs=28.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+++|+|=|..|-.+|..|+..|.+|+|+|..|.
T Consensus        23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi   57 (162)
T PF00670_consen   23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI   57 (162)
T ss_dssp             TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred             CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence            57899999999999999999999999999998654

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.08  E-value=0.01  Score=46.85  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=31.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|.|+|.|-+|+++|..|++.|++|+++|...
T Consensus         7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            4689999999999999999999999999999643

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=96.07  E-value=0.01  Score=44.18  Aligned_cols=34  Identities=21%  Similarity=0.351  Sum_probs=31.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |||+|+|+|.-|.-.|..|++.|.+|+++=|.+.
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            6899999999999999999999988998887764

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.06  E-value=0.011  Score=45.63  Aligned_cols=34  Identities=18%  Similarity=0.390  Sum_probs=31.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||-|.+|.++|..|++.|++|+.++++..
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~   37 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE   37 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            5899999999999999999999999999997643

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=96.05  E-value=0.016  Score=42.55  Aligned_cols=36  Identities=22%  Similarity=0.445  Sum_probs=32.0

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +.++|+|||.|..|-+.|..|+++|+.+.++.+...
T Consensus         2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~   37 (279)
T COG0287           2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRS   37 (279)
T ss_pred             CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCc
Confidence            357999999999999999999999999988887544

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.05  E-value=0.011  Score=43.77  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=31.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|.|||.|.-|...|..|.+.|+++++++|++.
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~   34 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPE   34 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            4799999999999999999999999999998654

>PRK06545 prephenate dehydrogenase; Validated

Probab=96.01  E-value=0.014  Score=44.34  Aligned_cols=34  Identities=12%  Similarity=0.166  Sum_probs=31.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|.|||.|..|-+.|..|++.|+++.++.+.+.
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~   34 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPS   34 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            4799999999999999999999999999987654

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.00  E-value=0.016  Score=38.20  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=30.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREG-YLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~   36 (143)
                      .++|+|+|+|..|...+..|.+.| .+++++.|+..
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~   54 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLE   54 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence            478999999999999999999985 78999987643

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.00  E-value=0.014  Score=47.71  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=30.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~   35 (143)
                      +++|+|||+|..|+.+|..|.+.|. +|+++.+++
T Consensus       323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            4799999999999999999999987 699998765

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=95.97  E-value=0.015  Score=44.00  Aligned_cols=31  Identities=13%  Similarity=0.266  Sum_probs=29.0

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCC--------CeEEEEeeC
Q 038409            4 HAALIGAGTAGLGATRELSREG--------YLLVVFERA   34 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g--------~~v~v~Er~   34 (143)
                      +|+|||+|.-|.++|..|.+.|        ++|+++.|.
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~   39 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFE   39 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEec
Confidence            6899999999999999999999        999999884

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=95.97  E-value=0.013  Score=46.51  Aligned_cols=34  Identities=29%  Similarity=0.462  Sum_probs=31.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|+|+|..|+.++..++..|.+|+++++++.
T Consensus       165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~  198 (511)
T TIGR00561       165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  198 (511)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5899999999999999999999999999998754

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=95.97  E-value=0.01  Score=46.75  Aligned_cols=34  Identities=21%  Similarity=0.434  Sum_probs=31.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|.|||.|.-|..+|..|.++|++|++|+|.+.
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~   35 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE   35 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5899999999999999999999999999998755

>PLN02256 arogenate dehydrogenase

Probab=95.96  E-value=0.017  Score=42.93  Aligned_cols=34  Identities=15%  Similarity=0.317  Sum_probs=30.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|.|||.|..|-+.|..|.+.|++|.+++++.
T Consensus        36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~   69 (304)
T PLN02256         36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD   69 (304)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence            4689999999999999999999999999998764

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.93  E-value=0.012  Score=45.71  Aligned_cols=34  Identities=24%  Similarity=0.379  Sum_probs=31.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|+|+|+|..|..+|..|.+.|++++++++++.
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~   34 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE   34 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            5899999999999999999999999999998544

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=95.93  E-value=0.016  Score=35.14  Aligned_cols=33  Identities=27%  Similarity=0.472  Sum_probs=28.9

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCC---CeEEEE-eeCCC
Q 038409            4 HAALIGAGTAGLGATRELSREG---YLLVVF-ERAKG   36 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g---~~v~v~-Er~~~   36 (143)
                      ||.|||+|--|.+.+..|.+.|   .++.++ +|++.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~   37 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPE   37 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHH
Confidence            6899999999999999999999   899855 77643

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=95.92  E-value=0.019  Score=42.89  Aligned_cols=35  Identities=26%  Similarity=0.411  Sum_probs=30.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~~   36 (143)
                      ++||+|||+|..|-++|..|...+.  ++.+|+.+..
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~   42 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE   42 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            3589999999999999999999887  7999997554

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=95.90  E-value=0.018  Score=41.92  Aligned_cols=34  Identities=21%  Similarity=0.295  Sum_probs=30.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++++|+|+|-.|.+++..|.+.|.+++++.|..
T Consensus       117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~  150 (270)
T TIGR00507       117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTV  150 (270)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999998864

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=95.90  E-value=0.014  Score=43.14  Aligned_cols=34  Identities=24%  Similarity=0.377  Sum_probs=31.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|.|||.|.-|...|..|.+.|+++++|+|.+.
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~   34 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQE   34 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            3799999999999999999999999999998643

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.87  E-value=0.027  Score=38.46  Aligned_cols=35  Identities=23%  Similarity=0.408  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||.|-.|-..|..|+.-|.+|..|++...
T Consensus        36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~   70 (178)
T PF02826_consen   36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPK   70 (178)
T ss_dssp             TSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred             CCEEEEEEEcCCcCeEeeeeecCCceeEEecccCC
Confidence            57999999999999999999999999999998765

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PLN02494 adenosylhomocysteinase

Probab=95.86  E-value=0.019  Score=45.09  Aligned_cols=35  Identities=23%  Similarity=0.277  Sum_probs=31.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|+|.|..|..+|..++..|.+|.++|+.+.
T Consensus       254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~  288 (477)
T PLN02494        254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI  288 (477)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            57899999999999999999999999999998653

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=95.84  E-value=0.021  Score=42.11  Aligned_cols=34  Identities=21%  Similarity=0.323  Sum_probs=29.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYL-LVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~-v~v~Er~~   35 (143)
                      +++++|+|||=+|.++|.+|.+.|.+ |+|+.|+.
T Consensus       126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            46899999998889999999999986 99998864

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=95.81  E-value=0.019  Score=43.18  Aligned_cols=33  Identities=30%  Similarity=0.345  Sum_probs=30.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +++|.|||.|..|.+.|..|+..|++|.++.+.
T Consensus        17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~   49 (330)
T PRK05479         17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLRE   49 (330)
T ss_pred             CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECC
Confidence            578999999999999999999999999988765

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=95.80  E-value=0.022  Score=44.97  Aligned_cols=35  Identities=23%  Similarity=0.294  Sum_probs=29.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..+.+.|. +|+++|+.+.
T Consensus       283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~  318 (485)
T TIGR01317       283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK  318 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence            4789999999999999888877764 7999997654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.80  E-value=0.02  Score=43.21  Aligned_cols=33  Identities=30%  Similarity=0.538  Sum_probs=30.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~   34 (143)
                      .++|+|||+|--|..+|..|.+.|+ +++|+|+.
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D   57 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRD   57 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            4689999999999999999999998 89999875

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=95.80  E-value=0.017  Score=42.55  Aligned_cols=34  Identities=26%  Similarity=0.417  Sum_probs=31.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|++||-|.-|..+|..|.++|+.+++|.|.+.
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~   34 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPE   34 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChh
Confidence            4899999999999999999999999999999755

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.78  E-value=0.021  Score=35.86  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=28.2

Q ss_pred             EEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            5 AALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         5 v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|+|.|..|...+..|.+.+.+++++|+.+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            68999999999999999998889999998754

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=95.74  E-value=0.016  Score=45.14  Aligned_cols=40  Identities=18%  Similarity=0.209  Sum_probs=31.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .+|+|+|.|+.-..+|.+|++.|.+|..++|++--||.|.
T Consensus         5 yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~a   44 (438)
T PF00996_consen    5 YDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWA   44 (438)
T ss_dssp             ESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-
T ss_pred             ceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchh
Confidence            4799999999999999999999999999999999997764

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=95.74  E-value=0.024  Score=41.48  Aligned_cols=35  Identities=20%  Similarity=0.234  Sum_probs=31.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREG-YLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~   36 (143)
                      +++|+|+|+|-+|.+++.+|.+.| .+|+++.|+..
T Consensus       123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~  158 (278)
T PRK00258        123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRTVE  158 (278)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence            468999999999999999999999 68999988643

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.73  E-value=0.025  Score=41.35  Aligned_cols=33  Identities=24%  Similarity=0.482  Sum_probs=29.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~   34 (143)
                      ..+|+|||+|-.|..+|.+|.+.|+ +++|+|..
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            4689999999999999999999996 89999864

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.70  E-value=0.025  Score=44.40  Aligned_cols=35  Identities=17%  Similarity=0.265  Sum_probs=31.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..+.+.|. +|++++|++.
T Consensus       282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~  317 (467)
T TIGR01318       282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE  317 (467)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence            4789999999999999999999985 7999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PTZ00117 malate dehydrogenase; Provisional

Probab=95.70  E-value=0.027  Score=42.16  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=30.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREG-YLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~   36 (143)
                      .+||+|||||..|.++|..|...| .++.+++....
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~   40 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG   40 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence            468999999999999999999888 58999997653

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.69  E-value=0.017  Score=45.13  Aligned_cols=34  Identities=24%  Similarity=0.441  Sum_probs=30.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|.|+|.|-+|+++|..|.+.|++|++.|...
T Consensus         9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~   42 (460)
T PRK01390          9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDNP   42 (460)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCCh
Confidence            3689999999999999999999999999999653

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.68  E-value=0.025  Score=44.50  Aligned_cols=35  Identities=26%  Similarity=0.252  Sum_probs=31.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||.|..|..+|..|+..|.+|+++|+.+.
T Consensus       254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~  288 (476)
T PTZ00075        254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPI  288 (476)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            58999999999999999999999999999987643

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.67  E-value=0.026  Score=43.05  Aligned_cols=34  Identities=12%  Similarity=0.194  Sum_probs=30.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC-------CeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREG-------YLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g-------~~v~v~Er~~~   36 (143)
                      ++|+|||+|.-|.+.|..|.+.|       ++|+++-|++.
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~   52 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEI   52 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEeccc
Confidence            58999999999999999999987       79999988764

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=95.65  E-value=0.02  Score=42.58  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=29.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREG-YLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~   35 (143)
                      +++|+|||+|..|..++..|.+.| .++++++|.+
T Consensus       178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~  212 (311)
T cd05213         178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY  212 (311)
T ss_pred             CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            578999999999999999999865 5899999864

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.65  E-value=0.02  Score=43.14  Aligned_cols=33  Identities=18%  Similarity=0.317  Sum_probs=28.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|||+|.-|.+.|..|++.| .++++-+++
T Consensus         7 ~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~   39 (341)
T PRK12439          7 EPKVVVLGGGSWGTTVASICARRG-PTLQWVRSA   39 (341)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCH
Confidence            468999999999999999999998 577776543

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=95.64  E-value=0.022  Score=42.06  Aligned_cols=33  Identities=27%  Similarity=0.315  Sum_probs=30.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |+|.|||.|.-|...|..|.+.|++++++++.+
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~   33 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGP   33 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            379999999999999999999999999998754

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=95.64  E-value=0.03  Score=38.61  Aligned_cols=34  Identities=32%  Similarity=0.439  Sum_probs=30.0

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++++|+|| |..|..++..|.+.|.+++++.|+.
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~   62 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL   62 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            468999997 9999999999999999999998753

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=95.63  E-value=0.015  Score=41.43  Aligned_cols=35  Identities=20%  Similarity=0.364  Sum_probs=31.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+.|+|||||.-|--+|.-.+..|++|.+++++..
T Consensus        11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~   45 (298)
T KOG2304|consen   11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED   45 (298)
T ss_pred             ccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence            36899999999999999999999999999998654

>PRK05993 short chain dehydrogenase; Provisional

Probab=95.57  E-value=0.029  Score=40.72  Aligned_cols=36  Identities=19%  Similarity=0.295  Sum_probs=30.9

Q ss_pred             CCCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |++.|+|.|| |-.|..+|..|.+.|++|.+..|++.
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~   39 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEE   39 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4578999998 88999999999999999999987643

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=95.55  E-value=0.026  Score=43.80  Aligned_cols=34  Identities=26%  Similarity=0.384  Sum_probs=30.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~   35 (143)
                      +++|+|||+|..|..++..|...|. +++++.|..
T Consensus       182 ~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~  216 (423)
T PRK00045        182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL  216 (423)
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence            4689999999999999999999997 799999864

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.54  E-value=0.031  Score=39.68  Aligned_cols=31  Identities=16%  Similarity=0.394  Sum_probs=28.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEe
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFE   32 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~E   32 (143)
                      +++|+|||||-.+.--+..|.+.|.+|+|+-
T Consensus        25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVa   55 (223)
T PRK05562         25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILS   55 (223)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            4689999999999999999999999999994

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.53  E-value=0.03  Score=41.11  Aligned_cols=35  Identities=26%  Similarity=0.338  Sum_probs=30.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      +++|+|||+|=++-+++.+|.+.|. +++|+.|...
T Consensus       125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~  160 (282)
T TIGR01809       125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPD  160 (282)
T ss_pred             CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence            4689999999999999999999997 7999988643

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.51  E-value=0.028  Score=43.70  Aligned_cols=35  Identities=26%  Similarity=0.474  Sum_probs=32.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++++|+|+|..|..+|..|.+.|++++++|+.+.
T Consensus       231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~  265 (453)
T PRK09496        231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE  265 (453)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            47899999999999999999999999999998754

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.50  E-value=0.032  Score=41.08  Aligned_cols=33  Identities=15%  Similarity=0.191  Sum_probs=30.2

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +|+|+|||+|- .|..+|..|.+.|..|+++.+.
T Consensus       159 Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~  192 (283)
T PRK14192        159 GKHAVVVGRSAILGKPMAMMLLNANATVTICHSR  192 (283)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            58999999996 9999999999999999999874

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.49  E-value=0.029  Score=41.60  Aligned_cols=34  Identities=21%  Similarity=0.214  Sum_probs=31.0

Q ss_pred             CCcEEEEcCC-HHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAG-TAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG-~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|+|+|||.| +-|.-+|..|.++|++|+++.+..
T Consensus       159 Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t  193 (301)
T PRK14194        159 GKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS  193 (301)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC
Confidence            6899999996 999999999999999999997653

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=95.49  E-value=0.031  Score=39.20  Aligned_cols=33  Identities=21%  Similarity=0.321  Sum_probs=30.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +|++.|+|+|..|-+.|..|.+.|++|.+--|+
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r   33 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSR   33 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCCCeEEEecCC
Confidence            479999999999999999999999999998554

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=95.48  E-value=0.026  Score=44.36  Aligned_cols=34  Identities=21%  Similarity=0.341  Sum_probs=28.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~   35 (143)
                      +++|+|||+|..|+.+|..+.+.|. +|++.+..+
T Consensus       281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~  315 (471)
T PRK12810        281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP  315 (471)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence            4789999999999999998888876 788776544

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=95.47  E-value=0.031  Score=43.37  Aligned_cols=34  Identities=32%  Similarity=0.425  Sum_probs=30.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREG-YLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~   35 (143)
                      +++|+|||+|..|..++..|...| .+++++.|..
T Consensus       180 ~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~  214 (417)
T TIGR01035       180 GKKALLIGAGEMGELVAKHLLRKGVGKILIANRTY  214 (417)
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            468999999999999999999999 6899998864

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.46  E-value=0.024  Score=42.84  Aligned_cols=34  Identities=21%  Similarity=0.300  Sum_probs=27.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      .++|+|||||.++..++..|.+.+.  +|+++=|++
T Consensus       190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~  225 (341)
T PF13434_consen  190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP  225 (341)
T ss_dssp             -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred             CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence            4789999999999999999998865  788887764

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.45  E-value=0.033  Score=42.06  Aligned_cols=33  Identities=30%  Similarity=0.524  Sum_probs=30.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~   34 (143)
                      ..+|+|||+|--|..+|..|.+.|+ ++++++..
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4689999999999999999999999 89999974

>PRK08507 prephenate dehydrogenase; Validated

Probab=95.44  E-value=0.026  Score=41.18  Aligned_cols=33  Identities=18%  Similarity=0.317  Sum_probs=28.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      ++|.|||.|..|-+.|..|.+.|+  ++.++++++
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~   35 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNE   35 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCH
Confidence            479999999999999999999986  688888754

>PRK08655 prephenate dehydrogenase; Provisional

Probab=95.42  E-value=0.029  Score=43.75  Aligned_cols=34  Identities=26%  Similarity=0.398  Sum_probs=30.2

Q ss_pred             CcEEEEc-CCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIG-AGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIG-aG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|+||| .|..|.+.|..|.+.|++|+++.|.+.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~   35 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPK   35 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            4799998 699999999999999999999998644

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=95.40  E-value=0.013  Score=38.05  Aligned_cols=30  Identities=33%  Similarity=0.464  Sum_probs=26.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEe
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFE   32 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~E   32 (143)
                      ++|.|||+|-.|...|.+|.+.|+.|.-+.
T Consensus        11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~   40 (127)
T PF10727_consen   11 LKIGIIGAGRVGTALARALARAGHEVVGVY   40 (127)
T ss_dssp             -EEEEECTSCCCCHHHHHHHHTTSEEEEES
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence            689999999999999999999999887664

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.39  E-value=0.013  Score=44.40  Aligned_cols=29  Identities=24%  Similarity=0.352  Sum_probs=25.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEE
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVF   31 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~   31 (143)
                      .+|+|||+|++|.++|+..+++|++.-++
T Consensus       212 yDVLvVGgGPAgaaAAiYaARKGiRTGl~  240 (520)
T COG3634         212 YDVLVVGGGPAGAAAAIYAARKGIRTGLV  240 (520)
T ss_pred             ceEEEEcCCcchhHHHHHHHhhcchhhhh
Confidence            47999999999999999999999976544

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=95.36  E-value=0.16  Score=39.76  Aligned_cols=30  Identities=23%  Similarity=0.500  Sum_probs=25.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC--eEEEEe
Q 038409            3 CHAALIGAGTAGLGATRELSREGY--LLVVFE   32 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~E   32 (143)
                      ++++|||+|.+|..|+..+++.|+  +++++-
T Consensus        75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~  106 (478)
T KOG1336|consen   75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVK  106 (478)
T ss_pred             ceEEEEcCCchhhhhHhhHHhhCCCcceEEEe
Confidence            679999999999999999999987  455553

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.36  E-value=0.037  Score=39.33  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=29.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~   34 (143)
                      .++|+|||+|-.|..+|..|.+.|+ ++++++..
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            4689999999999999999999998 78888753

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=95.35  E-value=0.039  Score=41.96  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=30.8

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      .|+|+|.|| |..|..++..|.+.|++|+.+.|..
T Consensus        21 ~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         21 KLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            478999998 9999999999999999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	3e-07
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	4e-07
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	2e-05
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	8e-05
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	1e-04
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	7e-04

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464

 Score = 47.3 bits (112), Expect = 3e-07
 Identities = 20/106 (18%), Positives = 31/106 (29%), Gaps = 17/106 (16%)

Query: 1   MSCHAALIGAGTAGLGATR------ELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLV 54
           M+   A++GAG +G+   R      E   E   LV FE+            +  L     
Sbjct: 1   MATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGE 60

Query: 55  LTALSGQIYIG-------EIMNFREYPFLARNDGTADPRRFRGHWE 93
               S  +Y         E + F +Y F            +     
Sbjct: 61  PVHSS--MYRYLWSNGPKECLEFADYTF--DEHFGKPIASYPPREV 102

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447

 Score = 46.9 bits (111), Expect = 4e-07
 Identities = 19/113 (16%), Positives = 29/113 (25%), Gaps = 31/113 (27%)

Query: 6   ALIGAGTAGLGATRELSREGYLL--VVFERAKGL---------TQTHLAMPQVELQPGLV 54
           A+IGAG +GL   + L  E       +FER                 L +P         
Sbjct: 10  AIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTE 69

Query: 55  LTALSGQ-------IYIG-------EIMNFREYPFLARNDGTADPRRFRGHWE 93
                         +Y         E+M + +  F           +F     
Sbjct: 70  PIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSF------KPQTLQFPHRHT 116

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 40.2 bits (95), Expect = 8e-05
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 6   ALIGAGTAGLGATRELSREGYLLVVFERA 34
            +IGAG AGL A  EL  +GY + V++R 
Sbjct: 126 GVIGAGPAGLAAAEELRAKGYEVHVYDRY 154

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 6   ALIGAGTAGLGATRELSREGYLLV-VFER 33
           AL+GAG A +     L+R GY  + +FE+
Sbjct: 191 ALLGAGPASISCASFLARLGYSDITIFEK 219

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 2  SCHAALIGAGTAGLGATRELSREGYLLVVFE 32
               +IG G  GL ATR+L+  G+  ++ E
Sbjct: 39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLE 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.57
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.56
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.48
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.42
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.35
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.35
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.33
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.25
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.24
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.23
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.23
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.22
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.21
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.19
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.16
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.16
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.13
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.13
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.12
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.11
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.1
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.08
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.07
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.05
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.02
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.0
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.0
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.97
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.96
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.96
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.95
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.95
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.94
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.93
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.92
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.92
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.91
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.9
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.89
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.88
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.88
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.86
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.86
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.85
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.84
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.84
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.83
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.82
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.82
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.82
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.81
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.8
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.8
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.8
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.8
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.8
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.79
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.79
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.79
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.78
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.78
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.78
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.78
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.77
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.76
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.76
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.75
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.75
3dme_A	369	Conserved exported protein; structural genomics, P	98.73
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.72
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.72
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.72
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.71
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.71
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.7
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.7
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.68
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.68
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.67
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.67
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.67
4dna_A	463	Probable glutathione reductase; structural genomic	98.67
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.67
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.66
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.66
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.65
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.65
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.65
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.64
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.64
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.64
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.63
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.63
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.63
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.63
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.63
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.62
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.62
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.62
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.62
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.62
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.61
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.61
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.6
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.59
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.59
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.59
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.59
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.59
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.59
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.58
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.58
3atr_A	453	Conserved archaeal protein; saturating double bond	98.58
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.58
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.58
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.57
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.57
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.57
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.57
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.57
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.57
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.56
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.56
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.56
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.56
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.55
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.55
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.55
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.55
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.54
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.54
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.54
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.54
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.53
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.53
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.53
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.52
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.52
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.51
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.51
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.51
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.5
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.5
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.49
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.49
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.49
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.48
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.48
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.47
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.47
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.47
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.46
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.46
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.46
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.45
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.44
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.44
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.44
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.43
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.43
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.41
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.41
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	98.4
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.4
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.39
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.38
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.38
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.38
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.37
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.36
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.36
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.36
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.36
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.36
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.35
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.35
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.34
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.33
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.32
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.32
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.31
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.29
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.29
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.29
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.29
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.28
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.28
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.27
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.27
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.27
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.26
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.26
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.25
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.24
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.23
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.22
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.22
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.2
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.19
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.19
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.18
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.18
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.16
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.15
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.15
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.15
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.14
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.14
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.13
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.12
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.11
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.08
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.05
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.05
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.04
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.04
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.03
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.98
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.96
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.93
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.92
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.91
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.91
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.84
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.81
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.79
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.77
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.76
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.76
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.74
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.71
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.68
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.68
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.68
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.66
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.65
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.65
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.64
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.62
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.61
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.59
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.56
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.56
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.55
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.55
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.55
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.54
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.53
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.52
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.51
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.5
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.5
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.48
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.48
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.45
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.44
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.42
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.4
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.38
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.38
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.38
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.37
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.35
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.35
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.34
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.34
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.33
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.33
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	97.32
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.32
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	97.3
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.3
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.29
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.28
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.28
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.27
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.27
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.27
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.27
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	97.27
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.27
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.26
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.26
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.24
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	97.24
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.23
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.23
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.23
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.23
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	97.23
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.23
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.22
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.22
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.22
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.21
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.2
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.19
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.19
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.19
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.19
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.18
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.16
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	97.16
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	97.15
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.15
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.14
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.14
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.14
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.14
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.14
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.13
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.13
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.12
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	97.11
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.11
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.11
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.11
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.11
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.1
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	97.09
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.09
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.09
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.07
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.06
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.06
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	97.05
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.05
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.05
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	97.05
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.05
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.03
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.02
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.01
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	97.0
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.98
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.98
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	96.97
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.97
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.96
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.95
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	96.95
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	96.95
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	96.95
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	96.93
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	96.93
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.91
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	96.91
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	96.89
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	96.87
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.87
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.87
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	96.86
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	96.86
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	96.85
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.85
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	96.85
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	96.85
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.84
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	96.82
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.82
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.81
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	96.8
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	96.8
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	96.8
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	96.79
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	96.78
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.78
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.78
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.78
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	96.77
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.76
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	96.76
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.75
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	96.75
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.75
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.74
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	96.73
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.73
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	96.72
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.72
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	96.71
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	96.7
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.7
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.7
3r9u_A	315	Thioredoxin reductase; structural genomics, center	96.69
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	96.68
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	96.67
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	96.66
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.66
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	96.66
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.65
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.65
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	96.65
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.65
4dna_A	463	Probable glutathione reductase; structural genomic	96.64
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	96.63
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.62
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.62
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.61
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	96.6
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	96.59
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	96.57
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	96.57
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	96.57
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.56
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.54
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.53
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	96.53
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	96.53
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.53
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.52
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	96.52
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.52
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.51
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.51
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	96.49
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.49
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.48
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	96.46
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.45
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.45
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	95.45
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.43
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.42
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	96.41
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.41
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.41
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.4
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	96.38
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.37
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.35
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.35
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.34
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	96.33
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	96.3
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	96.29
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	96.29
3s2u_A	365	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape	96.29
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.28
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	96.27
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.25
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.24
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.23
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.22
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.22
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	96.21
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.21
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.2
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.2
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.2
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.2
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	96.19
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.18
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.18
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	96.17
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.16
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.16
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	96.15
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.15
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.14
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.14
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.13
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.13
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	96.13
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.11
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	96.11
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	96.11
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.08
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	96.05
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	96.04
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	96.01
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.99
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	95.98
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	95.98
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	95.97
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.96
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.95
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.94
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	95.94
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	95.94
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	95.94
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	95.94
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	95.93
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	95.92
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	95.9
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	95.9
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	95.89
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.89
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	95.88
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.88
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	95.85
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.85
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	95.84
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	95.84
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	95.84
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.83
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.82
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	95.8
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	95.8

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.57  E-value=7.3e-16  Score=118.28  Aligned_cols=134  Identities=17%  Similarity=0.214  Sum_probs=82.8

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHH---CCCe---EEEEeeCCCCceeeeecCCCccCccCCccccccccc-------ccee
Q 038409            1 MSCHAALIGAGTAGLGATRELSR---EGYL---LVVFERAKGLTQTHLAMPQVELQPGLVLTALSGQIY-------IGEI   67 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~---~g~~---v~v~Er~~~~Gg~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~   67 (143)
                      |.++|+|||||++|+++|..|++   .|++   |+|||+++.+||.|.+.+...+++.|++  .++..|       +...
T Consensus         1 M~~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~--~~~~~y~~l~~~~~~~~   78 (464)
T 2xve_A            1 MATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEP--VHSSMYRYLWSNGPKEC   78 (464)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSB--CCCCCCTTCBCSSCGGG
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCC--CcCccccchhhcCChhh
Confidence            67899999999999999999999   9999   9999999999999998765555555544  333333       4455


Q ss_pred             eeeeccccCCCCCCCCCCCcCCCCceeeceEEEEEEeeec--cCCCCeEEcCceEEEeec-c----eEEEcc---C--cE
Q 038409           68 MNFREYPFLARNDGTADPRRFRGHWETAGVAKVYIASKLV--AGYNNMLLYSMIESIHEN-G----SVVIRI---Q--RV  135 (143)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~v~~~~~~-~----~v~~~d---G--~~  135 (143)
                      +.|++++|+..  ...+...|+.+.+...    ++.....  .....++++.+|+.++.+ +    .|++.+   |  .+
T Consensus        79 ~~~~~~~~~~~--~~~~~~~~~~~~~l~~----~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~  152 (464)
T 2xve_A           79 LEFADYTFDEH--FGKPIASYPPREVLWD----YIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYS  152 (464)
T ss_dssp             TCBTTBCHHHH--HSSCCCSSCBHHHHHH----HHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             cccCCCCCCcc--cCCCCCCCCCHHHHHH----HHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEE
Confidence            66666665432  1111233443222111    0101100  111236667778887642 1    477766   4  56


Q ss_pred             EEeeeEe
Q 038409          136 IFTDIIQ  142 (143)
Q Consensus       136 ~~aD~vI  142 (143)
                      +.+|.||
T Consensus       153 ~~~d~VV  159 (464)
T 2xve_A          153 EEFDYVV  159 (464)
T ss_dssp             EEESEEE
T ss_pred             EEcCEEE
Confidence            8899887

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.56  E-value=5.8e-15  Score=110.31  Aligned_cols=35  Identities=31%  Similarity=0.591  Sum_probs=32.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+||+|||||++||++|+.|++.|++|+||||.+.
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~   35 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA   35 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            37999999999999999999999999999999766

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.48  E-value=2.6e-14  Score=108.97  Aligned_cols=45  Identities=27%  Similarity=0.298  Sum_probs=41.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCCCCceeeeecCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAKGLTQTHLAMPQ   46 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~~~Gg~~~~~~~   46 (143)
                      .++|+|||||++|+++|..|++.|.  +|+|||+++.+||.|.+...
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~   52 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTST   52 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSC
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCC
Confidence            3689999999999999999999999  99999999999999987653

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.42  E-value=1.5e-13  Score=103.30  Aligned_cols=134  Identities=16%  Similarity=0.108  Sum_probs=72.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC---ceeeeecCCC--ccCccCCccccccccccceeeeeeccccCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL---TQTHLAMPQV--ELQPGLVLTALSGQIYIGEIMNFREYPFLA   77 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~---Gg~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   77 (143)
                      ++|+|||||++|+++|+.|++.|++|+||||.+..   |..+...++.  .++.+|+.+.+.....+...+.+.+...  
T Consensus        24 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~--  101 (407)
T 3rp8_A           24 MKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS--  101 (407)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT--
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC--
Confidence            58999999999999999999999999999998764   2222222222  1334454322222111212222211100  


Q ss_pred             CCCCCCCCCcCCCCceeece-EEEEEEeeec--------cCCCCeEEcCceEEEeecc---eEEEccCcEEEeeeEe
Q 038409           78 RNDGTADPRRFRGHWETAGV-AKVYIASKLV--------AGYNNMLLYSMIESIHENG---SVVIRIQRVIFTDIIQ  142 (143)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~v~~~~~v~~~~~~~---~v~~~dG~~~~aD~vI  142 (143)
                          +.....++........ ...+..++..        .....|+++++|++++.++   .|++.||+++++|+||
T Consensus       102 ----g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV  174 (407)
T 3rp8_A          102 ----GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLI  174 (407)
T ss_dssp             ----CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCGGGEEESCCEEEEEEETTEEEEEETTSCEEEESEEE
T ss_pred             ----CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCcCEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEE
Confidence                0000011100000000 0001111111        1115789999999987543   5789999999999998

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.35  E-value=5.7e-13  Score=92.81  Aligned_cols=42  Identities=31%  Similarity=0.544  Sum_probs=38.5

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      |..+|+|||||++||++|+.|++.|++|+||||++.+||.+.
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~   42 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMS   42 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence            778999999999999999999999999999999999987654

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.35  E-value=7.7e-13  Score=96.95  Aligned_cols=119  Identities=16%  Similarity=0.134  Sum_probs=72.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeecCCCccCccCCccccccccccceeeeeeccccCCCCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVLTALSGQIYIGEIMNFREYPFLARNDGT   82 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+.+.+||.|.+.....    .    +..   +.....++.++++..    
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~----~----~~~---~~~~~~~~~~~~~~~----   68 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSL----H----LFS---PAGWSSIPGWPMPAS----   68 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTC----B----CSS---CGGGSCCSSSCCCCC----
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCc----E----ecC---chhhhhCCCCCCCCC----
Confidence            5899999999999999999999999999999999999987432110    0    000   222233333333221    


Q ss_pred             CCCCcCCCCceeeceEEEEEEeeeccCCCCeEEcCceEEEeecc---e-EEEccCcEEEeeeEeC
Q 038409           83 ADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHENG---S-VVIRIQRVIFTDIIQH  143 (143)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~---~-v~~~dG~~~~aD~vI~  143 (143)
                        ...|+...+...    ++..........++++.+|++++.++   . |.+.+| ++++|.||.
T Consensus        69 --~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~  126 (357)
T 4a9w_A           69 --QGPYPARAEVLA----YLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVIS  126 (357)
T ss_dssp             --SSSSCBHHHHHH----HHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEE
T ss_pred             --ccCCCCHHHHHH----HHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEE
Confidence              222332211101    11111111234577777888887543   3 777777 899998873

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.33  E-value=4.8e-12  Score=94.92  Aligned_cols=131  Identities=13%  Similarity=0.099  Sum_probs=70.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC----ceeeeecCCCc--cCccCCccccccccccceeeeeecccc
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL----TQTHLAMPQVE--LQPGLVLTALSGQIYIGEIMNFREYPF   75 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~----Gg~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~   75 (143)
                      .++|+|||||++|+++|+.|++.|++|+||||++..    |+.+...++..  +..+|+.+  .....+...+.+.+. .
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~--~~~~~~~~~~~~~~~-~   81 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL--DSISVPSSSMEYVDA-L   81 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCG--GGTCBCCCEEEEEET-T
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCcc--ccccccccceEEEec-C
Confidence            358999999999999999999999999999998653    33333222221  23344432  111111111111111 0


Q ss_pred             CCCCCCCCCCCcCCCCce-eeceE-EEEEEeeeccCCCCeEEcCceEEEeecc---eEEEccCcEEEeeeEe
Q 038409           76 LARNDGTADPRRFRGHWE-TAGVA-KVYIASKLVAGYNNMLLYSMIESIHENG---SVVIRIQRVIFTDIIQ  142 (143)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~v~~~~~v~~~~~~~---~v~~~dG~~~~aD~vI  142 (143)
                      ...     ....++.... ..... ...+...  .....++++++|++++.++   .|++.||+++++|+||
T Consensus        82 ~g~-----~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV  146 (397)
T 2vou_A           82 TGE-----RVGSVPADWRFTSYDSIYGGLYEL--FGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVI  146 (397)
T ss_dssp             TCC-----EEEEEECCCCEEEHHHHHHHHHHH--HCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEE
T ss_pred             CCC-----ccccccCcccccCHHHHHHHHHHh--CCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEE
Confidence            000     0000000000 00000 0000000  1245788888999987543   5889999999999998

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.25  E-value=4.1e-11  Score=89.88  Aligned_cols=34  Identities=32%  Similarity=0.565  Sum_probs=32.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||||++|+++|+.|++.|++|+||||++.
T Consensus        27 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   60 (398)
T 2xdo_A           27 KNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND   60 (398)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            4899999999999999999999999999999865

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.24  E-value=5.5e-12  Score=97.61  Aligned_cols=136  Identities=15%  Similarity=0.106  Sum_probs=70.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce---eeeecCCC--ccCccCCccccccccccceeeeeeccccC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ---THLAMPQV--ELQPGLVLTALSGQIYIGEIMNFREYPFL   76 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg---~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   76 (143)
                      ..+|+|||||++|+++|+.|++.|++|+||||.+..+.   .....++.  .++.+|+.+.+... .+.....+....+.
T Consensus        11 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~-~~~~~~~~~~~~~~   89 (500)
T 2qa1_A           11 DAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEV-ETSTQGHFGGLPID   89 (500)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSC-CBCCEEEETTEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhc-cccccccccceecc
Confidence            46899999999999999999999999999999876431   11112211  13445654333221 11111111111111


Q ss_pred             CCCCCCCCCCcCCCCceeeceE-EEEEEeeeccCCCCeEEcCceEEEeecc---eEEEccCc---EEEeeeEe
Q 038409           77 ARNDGTADPRRFRGHWETAGVA-KVYIASKLVAGYNNMLLYSMIESIHENG---SVVIRIQR---VIFTDIIQ  142 (143)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~v~~~~~~~---~v~~~dG~---~~~aD~vI  142 (143)
                      ..    .....++......+.. ...+..++......+++++++++++.++   .|++.||+   +++||.||
T Consensus        90 ~~----~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vV  158 (500)
T 2qa1_A           90 FG----VLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLV  158 (500)
T ss_dssp             GG----GSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEE
T ss_pred             cc----cCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEE
Confidence            00    0000111100000000 0001011112235788899999987543   57788886   78999987

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.23  E-value=4.2e-12  Score=98.23  Aligned_cols=36  Identities=31%  Similarity=0.403  Sum_probs=33.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      ..+|+|||||++|+++|+.|++.|++|+||||.+..
T Consensus        12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~   47 (499)
T 2qa2_A           12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQR   47 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            468999999999999999999999999999998764

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.23  E-value=4.9e-12  Score=93.03  Aligned_cols=42  Identities=21%  Similarity=0.301  Sum_probs=38.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHH---CCCeEEEEeeCCCCceeeee
Q 038409            2 SCHAALIGAGTAGLGATRELSR---EGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~---~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      |++|+|||||++|+++|+.|++   .|++|+||||++.+||.+..
T Consensus         1 m~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~   45 (342)
T 3qj4_A            1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTT   45 (342)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCE
T ss_pred             CCcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceee
Confidence            3689999999999999999999   99999999999988876653

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.22  E-value=1.2e-11  Score=92.18  Aligned_cols=35  Identities=31%  Similarity=0.489  Sum_probs=32.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      ++|+|||||++|+++|+.|++.|++|+|+||.+..
T Consensus        12 ~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~   46 (379)
T 3alj_A           12 RRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL   46 (379)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            58999999999999999999999999999998764

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.21  E-value=1.4e-11  Score=96.30  Aligned_cols=42  Identities=29%  Similarity=0.418  Sum_probs=39.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .+|+|||||++|+++|..|++.|++|+|+|+++.+||+|.+.
T Consensus        22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~   63 (549)
T 4ap3_A           22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWN   63 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC
T ss_pred             CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccC
Confidence            479999999999999999999999999999999999999754

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.19  E-value=1e-11  Score=95.43  Aligned_cols=40  Identities=23%  Similarity=0.311  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      ||+|+|||||++||+||..|+++|++|+|||+++.+||..
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~   40 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRA   40 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcE
Confidence            5899999999999999999999999999999999999753

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.16  E-value=2.4e-11  Score=94.87  Aligned_cols=42  Identities=33%  Similarity=0.407  Sum_probs=39.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHH-HCCCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELS-REGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~-~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .+|+|||||++|+++|..|+ +.|++|+|+|+++.+||+|.+.
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~   51 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWN   51 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHC
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCccccc
Confidence            47999999999999999999 8899999999999999998744

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.16  E-value=1.6e-11  Score=96.04  Aligned_cols=42  Identities=21%  Similarity=0.275  Sum_probs=39.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .+|+|||||++|+++|..|++.|++++|+|+++.+||+|.+.
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~   51 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWN   51 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccC
Confidence            479999999999999999999999999999999999999643

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.13  E-value=2.6e-11  Score=94.56  Aligned_cols=41  Identities=27%  Similarity=0.273  Sum_probs=38.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .+|+|||||++|+++|..|++.|++++|||+++.+||+|.+
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~   57 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYW   57 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccc
Confidence            47999999999999999999999999999999999999964

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.12  E-value=1.5e-11  Score=92.16  Aligned_cols=35  Identities=29%  Similarity=0.350  Sum_probs=32.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      ++|+|||||++|+++|+.|++.|++|+|+||++..
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~   41 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE   41 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            47999999999999999999999999999998664

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.11  E-value=1.1e-10  Score=87.82  Aligned_cols=35  Identities=23%  Similarity=0.417  Sum_probs=32.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYL-LVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~-v~v~Er~~~~   37 (143)
                      .+|+|||||++|+++|+.|++.|++ |+||||++..
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   40 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   40 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCc
Confidence            5899999999999999999999999 9999998764

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.10  E-value=1.3e-11  Score=92.79  Aligned_cols=34  Identities=29%  Similarity=0.470  Sum_probs=32.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~   39 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKF   39 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            5899999999999999999999999999999864

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.08  E-value=9.5e-11  Score=84.72  Aligned_cols=40  Identities=18%  Similarity=0.148  Sum_probs=36.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .++|+|||||++|+++|..|++.|++|+|+|+.  +||.|.+
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~   54 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTE   54 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGG
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecc
Confidence            358999999999999999999999999999997  7887774

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.07  E-value=1.1e-11  Score=97.39  Aligned_cols=35  Identities=26%  Similarity=0.361  Sum_probs=32.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .+|+|||||++|+++|+.|++.|++|+|+||.+..
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~   84 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEP   84 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence            47999999999999999999999999999998663

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.05  E-value=1.1e-10  Score=89.05  Aligned_cols=42  Identities=29%  Similarity=0.377  Sum_probs=38.1

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCCCCceeee
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGY--LLVVFERAKGLTQTHL   42 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~~~Gg~~~   42 (143)
                      |+++|+|||||++||++|..|+++|+  +|+|||+++.+||...
T Consensus         1 m~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~   44 (477)
T 3nks_A            1 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIR   44 (477)
T ss_dssp             -CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCC
T ss_pred             CCceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceE
Confidence            67899999999999999999999999  9999999999887653

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.02  E-value=1.2e-10  Score=89.60  Aligned_cols=40  Identities=25%  Similarity=0.443  Sum_probs=36.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHH-CCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSR-EGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~-~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .+|+|||||++||+||..|++ .|++|+|||+++.+||.+.
T Consensus        11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~   51 (513)
T 4gde_A           11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLAS   51 (513)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGC
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCee
Confidence            479999999999999999987 5999999999999998653

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.00  E-value=2.5e-10  Score=88.42  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=32.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~   41 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAF   41 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCC
Confidence            4899999999999999999999999999999864

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.97  E-value=4.4e-10  Score=84.16  Aligned_cols=41  Identities=27%  Similarity=0.328  Sum_probs=38.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC-CCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA-KGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~-~~~Gg~~~   42 (143)
                      .++|+|||||++||++|..|++.|++|+|||++ +.+||.|.
T Consensus        44 ~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~   85 (376)
T 2e1m_A           44 PKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIK   85 (376)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCcee
Confidence            468999999999999999999999999999999 88998775

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.96  E-value=5.4e-10  Score=84.19  Aligned_cols=41  Identities=32%  Similarity=0.420  Sum_probs=37.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREG-YLLVVFERAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~~Gg~~~   42 (143)
                      .++|+|||||++||++|..|++.| ++|+|||+++.+||.+.
T Consensus         6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~   47 (424)
T 2b9w_A            6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCH   47 (424)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCccc
Confidence            468999999999999999999999 89999999999887643

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.96  E-value=2.9e-10  Score=88.03  Aligned_cols=40  Identities=30%  Similarity=0.370  Sum_probs=37.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREG-YLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++||+||..|++.| ++|+|||+++.+||.+.
T Consensus         9 ~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~   49 (516)
T 1rsg_A            9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQ   49 (516)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCcee
Confidence            58999999999999999999999 99999999999998653

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.95  E-value=5.5e-10  Score=84.17  Aligned_cols=39  Identities=31%  Similarity=0.449  Sum_probs=36.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      |+|+|||||++||++|..|++.|++|+|||+++.+||..
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~   39 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRF   39 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcee
Confidence            589999999999999999999999999999998887654

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.95  E-value=2.8e-10  Score=86.39  Aligned_cols=40  Identities=25%  Similarity=0.336  Sum_probs=36.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC------CeEEEEeeCCCCceee
Q 038409            2 SCHAALIGAGTAGLGATRELSREG------YLLVVFERAKGLTQTH   41 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g------~~v~v~Er~~~~Gg~~   41 (143)
                      +++|+|||||++||++|..|+++|      ++|+|||+++.+||..
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~   50 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKI   50 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceE
Confidence            468999999999999999999999      9999999998888643

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.94  E-value=7.2e-10  Score=83.38  Aligned_cols=39  Identities=33%  Similarity=0.410  Sum_probs=36.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      |+|+|||||++||++|..|+++|++|+|+|+++.+||..
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~   39 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRF   39 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCce
Confidence            589999999999999999999999999999998887653

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.93  E-value=9.3e-10  Score=86.80  Aligned_cols=34  Identities=32%  Similarity=0.435  Sum_probs=32.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus        24 ~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~   57 (591)
T 3i3l_A           24 SKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAF   57 (591)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCC
Confidence            5899999999999999999999999999999855

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.92  E-value=3.7e-09  Score=79.70  Aligned_cols=36  Identities=28%  Similarity=0.565  Sum_probs=31.9

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCe--EEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYL--LVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~--v~v~Er~~~   36 (143)
                      |+++|+|||||++|+++|..|++.|++  |+++|+.+.
T Consensus         1 M~~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~   38 (410)
T 3ef6_A            1 MATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPH   38 (410)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSS
T ss_pred             CCCCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCC
Confidence            778999999999999999999999987  999999764

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.92  E-value=7.1e-10  Score=83.61  Aligned_cols=40  Identities=28%  Similarity=0.490  Sum_probs=37.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+++.+||.+.
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   41 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAY   41 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeec
Confidence            6899999999999999999999999999999988887654

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.91  E-value=1.1e-09  Score=80.98  Aligned_cols=36  Identities=19%  Similarity=0.371  Sum_probs=33.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      .+|+|||||++|+++|+.|++.|++|+||||++.+|
T Consensus         5 yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~   40 (397)
T 3oz2_A            5 YDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIG   40 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            379999999999999999999999999999987754

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.90  E-value=1.2e-09  Score=83.81  Aligned_cols=40  Identities=30%  Similarity=0.449  Sum_probs=37.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      .++|+|||||++||++|..|++.|++|+|||+++.+||.+
T Consensus        11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~   50 (489)
T 2jae_A           11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRV   50 (489)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCce
Confidence            4689999999999999999999999999999999998853

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.89  E-value=1.2e-09  Score=84.65  Aligned_cols=40  Identities=25%  Similarity=0.527  Sum_probs=37.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      .++|+|||||++||++|..|++.|++|+|||+++.+||..
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~   43 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRT   43 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCce
Confidence            3689999999999999999999999999999999998764

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.88  E-value=1.5e-09  Score=82.98  Aligned_cols=40  Identities=13%  Similarity=0.163  Sum_probs=37.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++||++|..|+++|++|+|+|+++.+||.+.
T Consensus        12 ~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   51 (453)
T 2bcg_G           12 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAA   51 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCcccc
Confidence            4799999999999999999999999999999999997753

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.88  E-value=8.8e-10  Score=80.18  Aligned_cols=43  Identities=19%  Similarity=0.226  Sum_probs=37.9

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC----CCceeeee
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAK----GLTQTHLA   43 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~----~~Gg~~~~   43 (143)
                      |+++|+|||||++|+++|..|++.|++|+|+|+.+    .+||.|.+
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~   67 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTT   67 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCccccc
Confidence            35689999999999999999999999999999954    58887764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.86  E-value=1e-09  Score=79.66  Aligned_cols=40  Identities=18%  Similarity=0.112  Sum_probs=37.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+.+.+||.|.
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~   47 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLS   47 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeh
Confidence            5899999999999999999999999999999999998884

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.86  E-value=2e-09  Score=82.85  Aligned_cols=39  Identities=33%  Similarity=0.428  Sum_probs=36.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      ++|+|||||++||++|..|++.|++|+|||+++.+||.+
T Consensus        14 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~   52 (504)
T 1sez_A           14 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKL   52 (504)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence            689999999999999999999999999999999998754

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.85  E-value=1.9e-09  Score=81.10  Aligned_cols=41  Identities=17%  Similarity=0.294  Sum_probs=37.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC-CCeEEEEeeCCCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSRE-GYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~-g~~v~v~Er~~~~Gg~~~   42 (143)
                      .++|+|||||++|+++|..|++. |++|+|+|+++.+||.+.
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~   48 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAY   48 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeee
Confidence            35899999999999999999999 999999999999998765

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.84  E-value=2e-09  Score=82.90  Aligned_cols=41  Identities=22%  Similarity=0.307  Sum_probs=38.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+++.+||.|.+
T Consensus        26 ~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~   66 (491)
T 3urh_A           26 YDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLN   66 (491)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccc
Confidence            58999999999999999999999999999999999998754

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.84  E-value=1.9e-09  Score=82.31  Aligned_cols=40  Identities=25%  Similarity=0.413  Sum_probs=36.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      .++|+|||||++||++|..|++.|++|+|||+++.+||..
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~   55 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAV   55 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCcee
Confidence            3689999999999999999999999999999999988653

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.83  E-value=4.3e-10  Score=89.35  Aligned_cols=35  Identities=23%  Similarity=0.427  Sum_probs=32.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHH-CCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSR-EGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~-~g~~v~v~Er~~~~   37 (143)
                      .+|+|||||++|+++|+.|++ .|++|+|+||++..
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~   68 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGP   68 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSC
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            379999999999999999999 99999999998764

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.82  E-value=1.7e-09  Score=79.16  Aligned_cols=42  Identities=17%  Similarity=0.290  Sum_probs=36.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHH--CCCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSR--EGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~--~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .+|+|||||++||+||+.|++  .|++|+|||+.+.+||.+.+.
T Consensus        66 ~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~  109 (326)
T 3fpz_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLG  109 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeC
Confidence            479999999999999999974  599999999999998876544

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.82  E-value=7.1e-09  Score=78.65  Aligned_cols=35  Identities=20%  Similarity=0.373  Sum_probs=31.2

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREG--YLLVVFERAK   35 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~   35 (143)
                      |.|+|+|||||++|+++|..|++.+  ++|+|+|+++
T Consensus         1 M~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~   37 (430)
T 3hyw_A            1 MAKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRP   37 (430)
T ss_dssp             -CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCC
Confidence            7899999999999999999999865  7999999875

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.82  E-value=3.9e-09  Score=79.13  Aligned_cols=40  Identities=18%  Similarity=0.334  Sum_probs=37.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+++.+||.+.
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~   43 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSY   43 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccc
Confidence            5899999999999999999999999999999999998764

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.81  E-value=1.9e-09  Score=82.58  Aligned_cols=43  Identities=33%  Similarity=0.496  Sum_probs=39.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      +++|+|||||++|+++|..|++.|++|+|||+.+.+||.|.|.
T Consensus       122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~g  164 (456)
T 2vdc_G          122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYG  164 (456)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeec
Confidence            4689999999999999999999999999999999999887764

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.80  E-value=3.7e-09  Score=79.72  Aligned_cols=40  Identities=20%  Similarity=0.327  Sum_probs=37.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .+|+|||||++|+++|..|++.|.+|+|+|+++.+||.+.
T Consensus        30 ~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~   69 (397)
T 3hdq_A           30 FDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAY   69 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGC
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccc
Confidence            4799999999999999999999999999999999998876

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.80  E-value=5.7e-09  Score=77.79  Aligned_cols=44  Identities=20%  Similarity=0.238  Sum_probs=36.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCC---ceeeeecCC
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGL---TQTHLAMPQ   46 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~---Gg~~~~~~~   46 (143)
                      ++|+|||||++|+++|+.|++.  |++|+||||++..   |.....+++
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~   49 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGR   49 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcH
Confidence            5899999999999999999999  9999999998775   544444443

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.80  E-value=1.7e-08  Score=75.79  Aligned_cols=35  Identities=17%  Similarity=0.188  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHH---CCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSR---EGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~---~g~~v~v~Er~~~   36 (143)
                      |++|+|||||++|+++|..|++   .|++|+|+|+++.
T Consensus         1 m~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~   38 (409)
T 3h8l_A            1 MTKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF   38 (409)
T ss_dssp             -CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence            4789999999999999999999   8999999999764

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.80  E-value=3.1e-09  Score=81.65  Aligned_cols=39  Identities=28%  Similarity=0.498  Sum_probs=36.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      ++|+|||||++||++|..|++.|++|+|||+++.+||..
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~   78 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRS   78 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcc
Confidence            589999999999999999999999999999999988664

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.80  E-value=3.8e-09  Score=80.17  Aligned_cols=35  Identities=31%  Similarity=0.404  Sum_probs=31.8

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |+++|+|||||++|+++|+.|++.|++|+|+|+++
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            45789999999999999999999999999999876

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.79  E-value=3.6e-09  Score=80.26  Aligned_cols=39  Identities=28%  Similarity=0.477  Sum_probs=36.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      ++|+|||||++||++|..|++.|++|+|||+++.+||.+
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~   44 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRT   44 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCce
Confidence            589999999999999999999999999999999888764

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.79  E-value=3.5e-09  Score=77.18  Aligned_cols=40  Identities=18%  Similarity=0.160  Sum_probs=37.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+.+.+||.|.
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   45 (335)
T 2zbw_A            6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLT   45 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeee
Confidence            5899999999999999999999999999999988888774

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.79  E-value=3.7e-09  Score=80.74  Aligned_cols=40  Identities=23%  Similarity=0.284  Sum_probs=36.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCCCceee
Q 038409            2 SCHAALIGAGTAGLGATRELSREG--YLLVVFERAKGLTQTH   41 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~~Gg~~   41 (143)
                      +++|+|||||++|+++|..|++.|  ++|+|||+++.+||.+
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~   45 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKV   45 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTC
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCcee
Confidence            368999999999999999999999  9999999998888753

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.78  E-value=6.2e-09  Score=74.35  Aligned_cols=38  Identities=24%  Similarity=0.372  Sum_probs=34.6

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      |+++|+|||||++|+++|..|++.|++|+|+|+.+..+
T Consensus         1 m~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~   38 (297)
T 3fbs_A            1 MKFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRN   38 (297)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCccc
Confidence            67899999999999999999999999999999876543

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.78  E-value=5.9e-09  Score=80.34  Aligned_cols=41  Identities=27%  Similarity=0.333  Sum_probs=38.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREG-YLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~~Gg~~~~   43 (143)
                      ++|+|||||++||++|..|++.| .+|+|||+++.+||.+..
T Consensus        10 ~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~   51 (484)
T 4dsg_A           10 PKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS   51 (484)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCE
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeee
Confidence            58999999999999999999998 799999999999988764

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.78  E-value=4.3e-09  Score=80.54  Aligned_cols=42  Identities=24%  Similarity=0.306  Sum_probs=38.9

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      |.++|+|||||++|+++|..|++.|++|+|+|+.+.+||.|.
T Consensus         1 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~   42 (468)
T 2qae_A            1 NPYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCL   42 (468)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCC
Confidence            567999999999999999999999999999999988998865

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.78  E-value=2.2e-08  Score=75.45  Aligned_cols=34  Identities=26%  Similarity=0.524  Sum_probs=31.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCe--EEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYL--LVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~--v~v~Er~~~   36 (143)
                      ++|+|||||++|+++|..|++.|++  |+++|+.+.
T Consensus        10 ~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~   45 (415)
T 3lxd_A           10 ADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPE   45 (415)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSS
T ss_pred             CcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCC
Confidence            5899999999999999999999987  999999764

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.77  E-value=2.9e-09  Score=76.71  Aligned_cols=42  Identities=33%  Similarity=0.346  Sum_probs=37.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEE-EeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVV-FERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v-~Er~~~~Gg~~~~~   44 (143)
                      +++|+|||||++|+++|..|++.|++|+| +|+ +.+||.|.+.
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~   46 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSS   46 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeee
Confidence            46899999999999999999999999999 999 6778877543

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.76  E-value=5.4e-09  Score=77.98  Aligned_cols=36  Identities=36%  Similarity=0.504  Sum_probs=33.6

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |..+|+|||||++|+++|+.|++.|++|+|+||.+.
T Consensus         1 m~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A            1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            667999999999999999999999999999999764

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.76  E-value=4.9e-09  Score=80.58  Aligned_cols=40  Identities=30%  Similarity=0.411  Sum_probs=37.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      .++|+|||||++||++|..|++.|++|+|+|+++.+||.+
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~   72 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRV   72 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCce
Confidence            4689999999999999999999999999999999988764

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.75  E-value=5.6e-09  Score=77.02  Aligned_cols=40  Identities=18%  Similarity=0.174  Sum_probs=37.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+.+.+||.|.
T Consensus        15 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   54 (360)
T 3ab1_A           15 RDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLA   54 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccc
Confidence            5899999999999999999999999999999988888774

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.75  E-value=5.8e-09  Score=77.72  Aligned_cols=40  Identities=18%  Similarity=0.287  Sum_probs=36.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+++.+||.+.
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~   41 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAY   41 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceE
Confidence            5899999999999999999999999999999998887653

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.73  E-value=1.1e-08  Score=75.01  Aligned_cols=36  Identities=36%  Similarity=0.565  Sum_probs=33.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      .+|+|||||++|+++|+.|+++|++|+|+||.+.+|
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~~~   40 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIG   40 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            489999999999999999999999999999986543

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.72  E-value=1.2e-08  Score=76.43  Aligned_cols=35  Identities=23%  Similarity=0.324  Sum_probs=31.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .||+|||||++|+++|..|...+.+|+|+|+.+..
T Consensus        10 ~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~   44 (385)
T 3klj_A           10 TKILILGAGPAGFSAAKAALGKCDDITMINSEKYL   44 (385)
T ss_dssp             CSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSC
T ss_pred             CCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence            58999999999999999997778999999997653

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.72  E-value=1.1e-08  Score=74.04  Aligned_cols=39  Identities=33%  Similarity=0.333  Sum_probs=34.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .+|+|||||++|+++|..|++.|++|+|+|+. .+||.+.
T Consensus         7 yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~~   45 (312)
T 4gcm_A            7 FDIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQMA   45 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGG
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCeee
Confidence            58999999999999999999999999999984 5777664

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.72  E-value=3.8e-08  Score=73.96  Aligned_cols=35  Identities=23%  Similarity=0.386  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~~   36 (143)
                      +++|+|||||++|+++|..|++.|+  +|+|+|+.+.
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~   37 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKH   37 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSS
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            4789999999999999999999998  8999999764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.71  E-value=8.3e-09  Score=76.07  Aligned_cols=39  Identities=28%  Similarity=0.518  Sum_probs=36.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++|+++|..|++.|+ +|+|+|+.+ +||.|.
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~   44 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFK   44 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccc
Confidence            589999999999999999999999 999999988 888775

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.71  E-value=5.8e-09  Score=79.84  Aligned_cols=41  Identities=24%  Similarity=0.352  Sum_probs=38.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .+|+|||||++|+++|..|++.|++|+|+||++.+||.|.+
T Consensus         5 ~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~   45 (466)
T 3l8k_A            5 YDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLY   45 (466)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccc
Confidence            47999999999999999999999999999999999999874

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.70  E-value=9.6e-09  Score=77.86  Aligned_cols=39  Identities=26%  Similarity=0.427  Sum_probs=35.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      ++|+|||||++|+++|..|++.|.+|+|+|+.+.+|+.+
T Consensus        28 ~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~   66 (417)
T 3v76_A           28 QDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKI   66 (417)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcee
Confidence            489999999999999999999999999999998876443

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.70  E-value=7.6e-09  Score=79.29  Aligned_cols=40  Identities=28%  Similarity=0.434  Sum_probs=37.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+.+.+||.|.
T Consensus         7 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~   46 (474)
T 1zmd_A            7 ADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCL   46 (474)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCccc
Confidence            5899999999999999999999999999999988998865

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.68  E-value=1e-08  Score=74.50  Aligned_cols=40  Identities=23%  Similarity=0.241  Sum_probs=36.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+. .+||.|.+
T Consensus         9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   48 (325)
T 2q7v_A            9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAW   48 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGG
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccc
Confidence            47999999999999999999999999999998 67877764

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.68  E-value=1.3e-08  Score=75.17  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=33.4

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      |..+|+|||||++|+++|+.|+++|++|+|+|+.+..
T Consensus         1 m~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~   37 (372)
T 2uzz_A            1 MKYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPP   37 (372)
T ss_dssp             -CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            5679999999999999999999999999999997653

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.67  E-value=1.4e-08  Score=78.43  Aligned_cols=41  Identities=27%  Similarity=0.464  Sum_probs=37.1

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      |.++|+|||||++|+++|..|++.|++|+|+|+. .+||.|.
T Consensus         1 m~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~c~   41 (500)
T 1onf_A            1 MVYDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCV   41 (500)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHH
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CcCcccc
Confidence            6689999999999999999999999999999997 5788875

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.67  E-value=1.8e-08  Score=78.25  Aligned_cols=40  Identities=25%  Similarity=0.209  Sum_probs=37.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+.+.+||.|.
T Consensus        44 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   83 (523)
T 1mo9_A           44 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   83 (523)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCccc
Confidence            6899999999999999999999999999999887898875

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.67  E-value=2.2e-08  Score=74.33  Aligned_cols=37  Identities=19%  Similarity=0.381  Sum_probs=33.6

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      |..+|+|||||++|+++|+.|+++|++|+|+|+.+..
T Consensus         2 ~~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~   38 (389)
T 2gf3_A            2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPP   38 (389)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            4568999999999999999999999999999997653

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.67  E-value=1.4e-08  Score=77.71  Aligned_cols=39  Identities=21%  Similarity=0.253  Sum_probs=36.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .+|+|||||++|+++|+.|++.|++|+|+|+ +.+||.|.
T Consensus         6 ~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~   44 (463)
T 4dna_A            6 YDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCV   44 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCccc
Confidence            4799999999999999999999999999999 67898764

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.67  E-value=1.6e-08  Score=77.29  Aligned_cols=41  Identities=24%  Similarity=0.370  Sum_probs=37.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .++|+|||||++|+++|..|++.|++|+|+|+.+.+||.|.
T Consensus         6 ~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~   46 (470)
T 1dxl_A            6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL   46 (470)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcccccc
Confidence            46899999999999999999999999999999988888764

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.66  E-value=1.7e-08  Score=73.21  Aligned_cols=40  Identities=20%  Similarity=0.406  Sum_probs=35.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+ ...||.|.+
T Consensus        17 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~   56 (319)
T 3cty_A           17 FDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAE   56 (319)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGG
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccc
Confidence            5799999999999999999999999999999 456776643

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.66  E-value=2.4e-08  Score=76.11  Aligned_cols=39  Identities=23%  Similarity=0.423  Sum_probs=35.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT   40 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~   40 (143)
                      ..+|+|||||++|+++|+.|++.|.+|+|+|+.+.+|+.
T Consensus        26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~   64 (447)
T 2i0z_A           26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRK   64 (447)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCce
Confidence            458999999999999999999999999999998876643

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.65  E-value=1.5e-08  Score=77.90  Aligned_cols=40  Identities=23%  Similarity=0.294  Sum_probs=36.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .+|+|||||++|+++|+.|++.|++|+|+|+ ..+||.|.+
T Consensus        27 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~   66 (484)
T 3o0h_A           27 FDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVI   66 (484)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceec
Confidence            4899999999999999999999999999999 678887653

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.65  E-value=1.7e-08  Score=76.14  Aligned_cols=39  Identities=31%  Similarity=0.503  Sum_probs=35.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      .+|+|||||++|+++|+.|++.|.+|+|+|+.+.+|+.+
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~   43 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKI   43 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhc
Confidence            489999999999999999999999999999998876443

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.65  E-value=1.1e-08  Score=78.87  Aligned_cols=41  Identities=17%  Similarity=0.263  Sum_probs=36.8

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHC---CCeEEEEeeCCCCceeee
Q 038409            1 MSCHAALIGAGTAGLGATRELSRE---GYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~---g~~v~v~Er~~~~Gg~~~   42 (143)
                      |.++|+|||||++|+++|..|++.   |++|+|+|+.+ +||.|.
T Consensus         1 M~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~   44 (499)
T 1xdi_A            1 MVTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAV   44 (499)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCccc
Confidence            567999999999999999999999   99999999987 888754

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.64  E-value=2e-08  Score=74.19  Aligned_cols=36  Identities=33%  Similarity=0.305  Sum_probs=32.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      .++|+|||||++|+++|+.|+ +|++|+|+|+.+.+|
T Consensus         9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~g   44 (381)
T 3nyc_A            9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQPG   44 (381)
T ss_dssp             ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSSTT
T ss_pred             cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCcc
Confidence            468999999999999999999 699999999987654

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.64  E-value=2.3e-08  Score=79.73  Aligned_cols=39  Identities=26%  Similarity=0.442  Sum_probs=36.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT   40 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~   40 (143)
                      .++|+|||||++|+++|..|.+.|++|+|||+++.+||.
T Consensus       107 ~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~  145 (662)
T 2z3y_A          107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR  145 (662)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence            468999999999999999999999999999999888874

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.64  E-value=1.7e-08  Score=80.84  Aligned_cols=42  Identities=31%  Similarity=0.494  Sum_probs=38.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .++|+|||||++|+++|..|++.|++|+|+|+.+.+||.+.+
T Consensus       391 ~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~  432 (690)
T 3k30_A          391 DARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQ  432 (690)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeee
Confidence            368999999999999999999999999999999999887654

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.63  E-value=1.9e-08  Score=77.69  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=31.9

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHH---CCCeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSR---EGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~---~g~~v~v~Er~~~   36 (143)
                      |.++|+|||||++|+++|+.|++   .|++|+|+|+.+.
T Consensus         1 m~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            1 MIRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             CcceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            67899999999999999999999   9999999999754

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.63  E-value=3.8e-08  Score=74.42  Aligned_cols=36  Identities=28%  Similarity=0.433  Sum_probs=33.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~~G   38 (143)
                      .+|+|||||++|+++|+.|+++|+ +|+|+|+.+..+
T Consensus         7 ~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~~   43 (438)
T 3dje_A            7 SSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPS   43 (438)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCCC
Confidence            479999999999999999999999 999999987644

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.63  E-value=2.8e-08  Score=81.30  Aligned_cols=39  Identities=26%  Similarity=0.442  Sum_probs=36.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT   40 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~   40 (143)
                      .++|+|||||++||++|..|++.|++|+|||+++.+||.
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~  316 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR  316 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCc
Confidence            468999999999999999999999999999999888864

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.63  E-value=2.5e-08  Score=75.98  Aligned_cols=38  Identities=21%  Similarity=0.320  Sum_probs=34.0

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCc
Q 038409            1 MSCHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLT   38 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~G   38 (143)
                      |.++|+|||||++|+++|..|++.  |++|+|+|+.+.+|
T Consensus         1 M~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g   40 (452)
T 3oc4_A            1 MSLKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVG   40 (452)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCc
Confidence            668999999999999999999998  89999999988766

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.63  E-value=2.2e-08  Score=76.32  Aligned_cols=40  Identities=33%  Similarity=0.383  Sum_probs=37.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+.+.+||.|.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~   41 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCL   41 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence            5899999999999999999999999999999988988764

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.62  E-value=2.2e-08  Score=76.77  Aligned_cols=40  Identities=28%  Similarity=0.370  Sum_probs=37.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+++.+||.|.
T Consensus         6 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   45 (478)
T 1v59_A            6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCL   45 (478)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccc
Confidence            5799999999999999999999999999999888888764

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.62  E-value=2.9e-08  Score=75.94  Aligned_cols=40  Identities=25%  Similarity=0.418  Sum_probs=36.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .++|+|||||++|+++|..|++.|++|+|+|+. .+||.|.
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~   43 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCV   43 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCcccc
Confidence            368999999999999999999999999999997 7888765

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.62  E-value=2.7e-08  Score=80.22  Aligned_cols=42  Identities=24%  Similarity=0.349  Sum_probs=38.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .++|+|||||++|+++|..|++.|++|+|||+.+.+||.|.+
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~  430 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ  430 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence            468999999999999999999999999999999989988765

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.62  E-value=3e-08  Score=75.32  Aligned_cols=40  Identities=13%  Similarity=0.120  Sum_probs=37.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||+|++|+++|..|++.|.+|+++|+++.+||.+.
T Consensus         7 ~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~   46 (433)
T 1d5t_A            7 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESS   46 (433)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcccccc
Confidence            5899999999999999999999999999999999887653

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.62  E-value=4.5e-08  Score=75.68  Aligned_cols=38  Identities=29%  Similarity=0.461  Sum_probs=34.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ   39 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg   39 (143)
                      .++|+|||||++|+++|..|++.|++|+|+|+.+.+|+
T Consensus        92 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~  129 (497)
T 2bry_A           92 NTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSR  129 (497)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCC
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCC
Confidence            46899999999999999999999999999999887763

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.61  E-value=2.5e-08  Score=71.88  Aligned_cols=40  Identities=33%  Similarity=0.386  Sum_probs=35.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~~Gg~~~~   43 (143)
                      ++|+|||||++|+++|..|++.|+ +|+|+|+. ..||.|.+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~   42 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITG   42 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGG
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCccccc
Confidence            689999999999999999999999 99999984 57777653

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.61  E-value=4.9e-08  Score=72.06  Aligned_cols=33  Identities=27%  Similarity=0.550  Sum_probs=31.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      .+|+|||||++|+++|+.|+++|++|+|+|+..
T Consensus         7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            489999999999999999999999999999865

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.60  E-value=3.3e-08  Score=73.20  Aligned_cols=35  Identities=26%  Similarity=0.299  Sum_probs=32.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .+|+|||||++|+++|+.|++.|++|+|+|+....
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~   52 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMG   52 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTT
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            58999999999999999999999999999997543

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.59  E-value=3.9e-08  Score=73.39  Aligned_cols=34  Identities=24%  Similarity=0.477  Sum_probs=32.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||++|+++|+.|+++|++|+|+||.+.
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~   38 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHTF   38 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4899999999999999999999999999999765

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.59  E-value=3.9e-08  Score=70.69  Aligned_cols=37  Identities=27%  Similarity=0.479  Sum_probs=34.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC-CCeEEEEeeCCCCce
Q 038409            3 CHAALIGAGTAGLGATRELSRE-GYLLVVFERAKGLTQ   39 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~-g~~v~v~Er~~~~Gg   39 (143)
                      .+|+|||||++|+++|..|++. |.+|+|+|+.+.+|+
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg   77 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGG   77 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCT
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCC
Confidence            4799999999999999999997 999999999887764

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.59  E-value=2.4e-08  Score=76.70  Aligned_cols=40  Identities=28%  Similarity=0.429  Sum_probs=36.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+.+.+||.|.
T Consensus         7 ~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   46 (482)
T 1ojt_A            7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL   46 (482)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCcee
Confidence            5799999999999999999999999999999888887753

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.59  E-value=1.9e-08  Score=72.79  Aligned_cols=40  Identities=18%  Similarity=0.189  Sum_probs=35.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      ++|+|||||++|+++|..|++.|++|+++|+. .+||.|.+
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   45 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT   45 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEec
Confidence            58999999999999999999999999999964 57776654

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.59  E-value=2.9e-08  Score=76.30  Aligned_cols=39  Identities=23%  Similarity=0.372  Sum_probs=36.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+. .+||.|.
T Consensus        12 ~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   50 (479)
T 2hqm_A           12 YDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCV   50 (479)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHH
T ss_pred             CCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCc
Confidence            58999999999999999999999999999997 6888875

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.59  E-value=4.3e-08  Score=75.11  Aligned_cols=41  Identities=32%  Similarity=0.415  Sum_probs=36.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC------Cceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG------LTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~------~Gg~~~   42 (143)
                      ..+|+|||||++|+++|..|++.|++|+|+|+.+.      +||.|.
T Consensus         3 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~   49 (476)
T 3lad_A            3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCL   49 (476)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccc
Confidence            46899999999999999999999999999999863      566654

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.58  E-value=3.6e-08  Score=75.40  Aligned_cols=40  Identities=25%  Similarity=0.463  Sum_probs=36.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCCCceee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKGLTQTH   41 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~~Gg~~   41 (143)
                      .++|+|||||++|+++|..|++.|+ +|+|||+++.+||.+
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~   44 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRM   44 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCce
Confidence            3689999999999999999999999 899999998888764

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.58  E-value=3.7e-08  Score=75.41  Aligned_cols=39  Identities=23%  Similarity=0.346  Sum_probs=36.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+. .+||.|.
T Consensus         5 ~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   43 (463)
T 2r9z_A            5 FDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCV   43 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCc
Confidence            68999999999999999999999999999997 6888875

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.58  E-value=2.5e-08  Score=75.96  Aligned_cols=34  Identities=29%  Similarity=0.463  Sum_probs=32.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~   40 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPW   40 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            5899999999999999999999999999999875

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.58  E-value=2.8e-08  Score=72.65  Aligned_cols=41  Identities=24%  Similarity=0.335  Sum_probs=36.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      ++|+|||||++|+++|..|++.|++|+++|+. .+||.|.+.
T Consensus        15 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~   55 (335)
T 2a87_A           15 RDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMTT   55 (335)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecc
Confidence            58999999999999999999999999999974 677776543

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.58  E-value=2.9e-08  Score=78.15  Aligned_cols=37  Identities=27%  Similarity=0.470  Sum_probs=33.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC------CCeEEEEeeCCCCce
Q 038409            3 CHAALIGAGTAGLGATRELSRE------GYLLVVFERAKGLTQ   39 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~------g~~v~v~Er~~~~Gg   39 (143)
                      .+|+|||||++|+++|+.|++.      |++|+|+||.+.+|+
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~   78 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGA   78 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTT
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCC
Confidence            5799999999999999999998      999999999877654

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.57  E-value=3.6e-08  Score=75.85  Aligned_cols=41  Identities=27%  Similarity=0.403  Sum_probs=36.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEee--------CCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFER--------AKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er--------~~~~Gg~~~~   43 (143)
                      .+|+|||||++|+++|..|++.|.+|+|+|+        ...+||+|.+
T Consensus         7 ~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~   55 (488)
T 3dgz_A            7 FDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVN   55 (488)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecc
Confidence            5899999999999999999999999999998        4558988753

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.57  E-value=3.1e-08  Score=75.99  Aligned_cols=40  Identities=28%  Similarity=0.369  Sum_probs=36.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+. .+||.|.+
T Consensus        21 ~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~   60 (478)
T 3dk9_A           21 YDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVN   60 (478)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcccc
Confidence            58999999999999999999999999999965 78888754

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.57  E-value=5.5e-08  Score=77.86  Aligned_cols=36  Identities=19%  Similarity=0.277  Sum_probs=33.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      ++|+|||||++|+++|+.|+++|++|+|+|+.+.+|
T Consensus       265 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g  300 (689)
T 3pvc_A          265 DDIAIIGGGIVSALTALALQRRGAVVTLYCADAQPA  300 (689)
T ss_dssp             SSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSSTT
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCccc
Confidence            589999999999999999999999999999976543

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.57  E-value=3.3e-08  Score=75.40  Aligned_cols=40  Identities=23%  Similarity=0.361  Sum_probs=36.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .++|+|||||++|+++|..|++.|++|+|+|+. .+||.|.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~   42 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCL   42 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCc
Confidence            468999999999999999999999999999997 7787764

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.57  E-value=3.3e-08  Score=75.37  Aligned_cols=39  Identities=21%  Similarity=0.283  Sum_probs=36.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+. .+||.|.
T Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   43 (450)
T 1ges_A            5 YDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCV   43 (450)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCccc
Confidence            58999999999999999999999999999997 6788764

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.57  E-value=5.2e-08  Score=75.68  Aligned_cols=35  Identities=37%  Similarity=0.621  Sum_probs=32.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .+|+|||||++|+++|+.|++.|++|+|+||.+..
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~   40 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGL   40 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSC
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            48999999999999999999999999999998764

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.56  E-value=4.8e-08  Score=70.44  Aligned_cols=33  Identities=27%  Similarity=0.331  Sum_probs=31.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      .+|+|||||++|++||..|++.|++|+|+|+..
T Consensus         5 yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~   37 (314)
T 4a5l_A            5 HDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM   37 (314)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            479999999999999999999999999999864

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.56  E-value=6.4e-08  Score=77.27  Aligned_cols=36  Identities=25%  Similarity=0.363  Sum_probs=33.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      .+|+|||||++|+++|+.|+++|++|+|+|+.+.+|
T Consensus       273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g  308 (676)
T 3ps9_A          273 REAAIIGGGIASALLSLALLRRGWQVTLYCADEAPA  308 (676)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCccc
Confidence            589999999999999999999999999999976544

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.56  E-value=4.4e-08  Score=76.79  Aligned_cols=38  Identities=18%  Similarity=0.393  Sum_probs=34.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT   40 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~   40 (143)
                      .+|+|||||++|+++|+.|++.|.+|+|+|+.+..||.
T Consensus       127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~  164 (571)
T 1y0p_A          127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN  164 (571)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence            58999999999999999999999999999998876643

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.55  E-value=4.1e-08  Score=72.17  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=31.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC------CeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREG------YLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g------~~v~v~Er~~~   36 (143)
                      |+|+|||||++|+++|+.|+++|      .+|+|+|+...
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~   40 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT   40 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence            58999999999999999999998      89999999754

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.55  E-value=2.8e-08  Score=75.94  Aligned_cols=40  Identities=28%  Similarity=0.331  Sum_probs=36.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .++|+|||||++|+++|..|++.|++|+|+|+ +.+||.|.
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~   44 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCL   44 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCC
Confidence            36899999999999999999999999999999 67898875

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.55  E-value=8.5e-08  Score=69.24  Aligned_cols=36  Identities=33%  Similarity=0.503  Sum_probs=32.1

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT   40 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~   40 (143)
                      +|+|||||++|++||+.|++.|++|+|||+.. .||.
T Consensus         8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~-~gg~   43 (304)
T 4fk1_A            8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNT-NRNR   43 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSC-CGGG
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCCe
Confidence            79999999999999999999999999999864 4443

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.55  E-value=3.3e-08  Score=71.91  Aligned_cols=40  Identities=18%  Similarity=0.174  Sum_probs=35.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEee----CCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFER----AKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er----~~~~Gg~~~   42 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+    ....||.|.
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~   52 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLT   52 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceee
Confidence            4899999999999999999999999999998    455666554

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.54  E-value=4.6e-08  Score=74.86  Aligned_cols=39  Identities=21%  Similarity=0.329  Sum_probs=35.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+.+ +||.|.
T Consensus         7 ~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~   45 (464)
T 2eq6_A            7 YDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCL   45 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCC
Confidence            579999999999999999999999999999977 888764

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.54  E-value=4.3e-08  Score=74.91  Aligned_cols=39  Identities=21%  Similarity=0.245  Sum_probs=35.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+. .+||.|.
T Consensus         4 ~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~   42 (464)
T 2a8x_A            4 YDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCL   42 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCccc
Confidence            58999999999999999999999999999997 6777653

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.54  E-value=8.8e-08  Score=71.00  Aligned_cols=33  Identities=27%  Similarity=0.486  Sum_probs=31.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      .+|+|||||++|+++|+.|+++|++|+|+|+..
T Consensus         6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~   38 (382)
T 1y56_B            6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF   38 (382)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            489999999999999999999999999999974

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.54  E-value=5.5e-08  Score=75.94  Aligned_cols=35  Identities=29%  Similarity=0.389  Sum_probs=32.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|||+|.+|+.+|..|++.+.+|++++|++.
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            57999999999999999999999999999999865

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.53  E-value=6.8e-08  Score=77.13  Aligned_cols=42  Identities=21%  Similarity=0.328  Sum_probs=38.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .++|+|||||++|+++|..|++.|++|+|+|+.+.+||.|.+
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~  414 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNI  414 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeec
Confidence            468999999999999999999999999999999888887754

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.53  E-value=6.6e-08  Score=75.04  Aligned_cols=41  Identities=29%  Similarity=0.502  Sum_probs=36.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC--------CCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK--------GLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~--------~~Gg~~~~   43 (143)
                      .+|+|||||++|+++|..|++.|.+|+|+|+.+        .+||+|.+
T Consensus        33 ~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~   81 (519)
T 3qfa_A           33 YDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVN   81 (519)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCC
Confidence            479999999999999999999999999999854        58888754

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.53  E-value=1.1e-07  Score=63.60  Aligned_cols=33  Identities=27%  Similarity=0.552  Sum_probs=31.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      .+|+|||||++|+.+|..|++.|.+|+++|+.+
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            689999999999999999999999999999975

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.52  E-value=8.3e-08  Score=74.29  Aligned_cols=38  Identities=32%  Similarity=0.495  Sum_probs=34.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT   40 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~   40 (143)
                      .+|+|||+|++|+++|+.|++.|.+|+|+||.+..||.
T Consensus        42 ~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~   79 (510)
T 4at0_A           42 ADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGA   79 (510)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence            37999999999999999999999999999998886643

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.52  E-value=1.2e-07  Score=66.24  Aligned_cols=35  Identities=17%  Similarity=0.319  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ..+|+|||||++|+.+|..|++.|.+|+++|+...
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~   37 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLD   37 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            35899999999999999999999999999999744

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.51  E-value=6.7e-08  Score=75.50  Aligned_cols=36  Identities=19%  Similarity=0.390  Sum_probs=33.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      .+|+|||||++|+++|+.|++.|++|+|+||.+..+
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~   62 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTI   62 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            379999999999999999999999999999987643

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.51  E-value=4.2e-08  Score=75.13  Aligned_cols=43  Identities=14%  Similarity=0.085  Sum_probs=38.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHH-C------CCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSR-E------GYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~-~------g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .++|+|||||++|+.+|..|++ .      |++|+|||+.+.+||.|.+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~g   52 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSG   52 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHT
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccc
Confidence            3689999999999999999999 7      99999999998888877653

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.51  E-value=5.5e-08  Score=81.02  Aligned_cols=42  Identities=31%  Similarity=0.493  Sum_probs=37.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCCCceeeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKGLTQTHLA   43 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~~Gg~~~~   43 (143)
                      +++|+|||||++|+++|..|++.|+ +|+|||+.+.+||.+.+
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~  229 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTS  229 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccc
Confidence            3689999999999999999999999 79999998888887643

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.50  E-value=7.1e-08  Score=74.40  Aligned_cols=39  Identities=33%  Similarity=0.473  Sum_probs=35.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .+|+|||||++|+++|..|++.|++|+|+|+.+ +||+|.
T Consensus         9 ~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~   47 (492)
T 3ic9_A            9 VDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCA   47 (492)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCccc
Confidence            479999999999999999999999999999964 888864

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.50  E-value=9.8e-08  Score=74.98  Aligned_cols=37  Identities=19%  Similarity=0.301  Sum_probs=33.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCc
Q 038409            2 SCHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLT   38 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~G   38 (143)
                      +++|+|||||++|+++|..|++.  |++|+|||+.+.++
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~   74 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS   74 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            57899999999999999999998  89999999988754

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.49  E-value=5.8e-08  Score=75.97  Aligned_cols=35  Identities=31%  Similarity=0.451  Sum_probs=33.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      ++|+|||||++|+++|+.|++.|++|+|+|+.+.+
T Consensus       108 ~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~  142 (549)
T 3nlc_A          108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV  142 (549)
T ss_dssp             CCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcc
Confidence            68999999999999999999999999999998775

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.49  E-value=1.4e-07  Score=73.39  Aligned_cols=35  Identities=29%  Similarity=0.312  Sum_probs=31.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHH---CCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSR---EGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~---~g~~v~v~Er~~~   36 (143)
                      .++|+|||||++|+++|+.|++   .|++|+|+|+.+.
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   42 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAI   42 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            3589999999999999999999   9999999999643

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.49  E-value=8.9e-08  Score=70.81  Aligned_cols=37  Identities=24%  Similarity=0.344  Sum_probs=33.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCce
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLTQ   39 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~Gg   39 (143)
                      .+|+|||||++|+++|+.|++.  |++|+|+|+.+.+||
T Consensus        80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GG  118 (344)
T 3jsk_A           80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGG  118 (344)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCT
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCC
Confidence            5799999999999999999997  999999999887763

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.48  E-value=9.2e-08  Score=71.28  Aligned_cols=34  Identities=26%  Similarity=0.412  Sum_probs=31.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHH-CC-CeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSR-EG-YLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~-~g-~~v~v~Er~~~   36 (143)
                      .+|+|||||++|+++|+.|++ +| ++|+|+|+.+.
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~~   57 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWL   57 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSST
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence            479999999999999999999 99 99999999873

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.48  E-value=8.5e-08  Score=73.91  Aligned_cols=41  Identities=24%  Similarity=0.333  Sum_probs=36.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHH-CCCeEEEEe--------eCCCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSR-EGYLLVVFE--------RAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~-~g~~v~v~E--------r~~~~Gg~~~   42 (143)
                      .++|+|||||++|+++|..|++ .|++|+|+|        +...+||.|.
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~   52 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCV   52 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHH
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCcccc
Confidence            3589999999999999999999 999999999        3566888765

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.47  E-value=1.2e-07  Score=76.92  Aligned_cols=37  Identities=35%  Similarity=0.503  Sum_probs=34.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ   39 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg   39 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+++.+||
T Consensus       337 ~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~gg  373 (776)
T 4gut_A          337 KSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGG  373 (776)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceec
Confidence            5899999999999999999999999999999888776

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.47  E-value=7.4e-08  Score=74.36  Aligned_cols=41  Identities=27%  Similarity=0.319  Sum_probs=36.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHH-CCCeEEEEe--------eCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSR-EGYLLVVFE--------RAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~-~g~~v~v~E--------r~~~~Gg~~~~   43 (143)
                      ++|+|||||++|+++|..|++ .|++|+|+|        ++..+||.|.+
T Consensus         8 ~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~   57 (495)
T 2wpf_A            8 FDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVN   57 (495)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHH
T ss_pred             cCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeec
Confidence            579999999999999999999 999999999        35568888753

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.47  E-value=8.9e-08  Score=73.29  Aligned_cols=36  Identities=22%  Similarity=0.267  Sum_probs=30.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~   37 (143)
                      +++|+|||||++|+++|..|++.  |++|+|||+.+.+
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~   40 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRI   40 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcc
Confidence            47999999999999999999998  8999999998774

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.46  E-value=1.4e-07  Score=73.24  Aligned_cols=34  Identities=21%  Similarity=0.276  Sum_probs=31.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHH------------CCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSR------------EGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~------------~g~~v~v~Er~~~   36 (143)
                      ++|+|||||++|+++|..|++            .|++|+|+|+.+.
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~   53 (526)
T 2pyx_A            8 TEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDV   53 (526)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCC
Confidence            589999999999999999999            8999999998654

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.46  E-value=1.1e-07  Score=74.45  Aligned_cols=37  Identities=22%  Similarity=0.382  Sum_probs=33.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ   39 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg   39 (143)
                      .+|+|||||++|+++|+.|++.|.+|+|+|+.+..||
T Consensus       122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg  158 (566)
T 1qo8_A          122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGG  158 (566)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            3799999999999999999999999999999887654

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.46  E-value=1.3e-07  Score=72.58  Aligned_cols=41  Identities=24%  Similarity=0.417  Sum_probs=35.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC-------C--CCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERA-------K--GLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~-------~--~~Gg~~~~   43 (143)
                      .+|+|||||++|+++|..|++.|++|+|+|+.       .  .+||+|.+
T Consensus        10 ~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~   59 (483)
T 3dgh_A           10 YDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVN   59 (483)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecc
Confidence            48999999999999999999999999999942       1  27888754

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.45  E-value=1.3e-07  Score=72.71  Aligned_cols=39  Identities=18%  Similarity=0.199  Sum_probs=36.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      .+|+|||+|++|+++|..|++.|.+|+++|+++.+||.+
T Consensus        21 ~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~   59 (475)
T 3p1w_A           21 YDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGET   59 (475)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGG
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            479999999999999999999999999999999988664

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.44  E-value=2.2e-07  Score=72.62  Aligned_cols=34  Identities=21%  Similarity=0.251  Sum_probs=31.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHH---CCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSR---EGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~---~g~~v~v~Er~~~   36 (143)
                      ++|+|||||++|+++|..|++   .|++|+|+|+.+.
T Consensus        26 ~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   62 (550)
T 2e4g_A           26 DKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence            579999999999999999999   9999999999653

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.44  E-value=9.6e-08  Score=73.20  Aligned_cols=42  Identities=14%  Similarity=0.182  Sum_probs=38.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCCCceeeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREG--YLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~~Gg~~~~   43 (143)
                      .++|+|||||++|+.+|..|++.|  ++|+|||+.+.+||.|.+
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~   49 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF   49 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeec
Confidence            468999999999999999999988  999999999888877765

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.44  E-value=1.5e-07  Score=69.20  Aligned_cols=38  Identities=18%  Similarity=0.397  Sum_probs=34.5

Q ss_pred             cEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCc-eee
Q 038409            4 HAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLT-QTH   41 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~G-g~~   41 (143)
                      +|+|||||++|+++|..|++.  |++|+|+|+.+..| +.|
T Consensus        67 dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~  107 (326)
T 2gjc_A           67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW  107 (326)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccccc
Confidence            799999999999999999998  99999999988876 444

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.43  E-value=5.8e-07  Score=70.28  Aligned_cols=35  Identities=23%  Similarity=0.362  Sum_probs=32.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|||+|.+|+.+|..|++.+.+|++++|++.
T Consensus       185 ~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            47999999999999999999999999999999875

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.43  E-value=1.8e-07  Score=72.92  Aligned_cols=37  Identities=22%  Similarity=0.298  Sum_probs=33.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCc
Q 038409            2 SCHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLT   38 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~G   38 (143)
                      ||+|+|||||++|+++|..|++.  +++|+|+|+.+..+
T Consensus         1 M~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            1 MKKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            47999999999999999999988  78999999988754

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.41  E-value=1.6e-06  Score=67.76  Aligned_cols=35  Identities=23%  Similarity=0.482  Sum_probs=32.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|||+|.+|+.+|..|++.+.+|++|+|.+.
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            57999999999999999999999999999999875

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.41  E-value=1.7e-07  Score=70.40  Aligned_cols=34  Identities=26%  Similarity=0.319  Sum_probs=31.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~   36 (143)
                      .+|+|||||++|+++|+.|+++  |++|+|+|+...
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~   72 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGL   72 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            4799999999999999999999  999999998754

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=98.40  E-value=1e-07  Score=76.52  Aligned_cols=35  Identities=26%  Similarity=0.480  Sum_probs=33.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC--------CeEEEEeeCC-CC
Q 038409            3 CHAALIGAGTAGLGATRELSREG--------YLLVVFERAK-GL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g--------~~v~v~Er~~-~~   37 (143)
                      ++|+|||||++||++|..|++.|        ++|+|||+++ .+
T Consensus        57 ~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           57 YRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            58999999999999999999998        9999999998 88

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.40  E-value=1.6e-07  Score=71.25  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=30.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREG-YLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~   36 (143)
                      .+|+|||||++|+++|+.|+++| .+|+|+|+...
T Consensus        24 ~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~   58 (448)
T 3axb_A           24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHA   58 (448)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCC
Confidence            47999999999999999999999 99999999333

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.39  E-value=3.1e-07  Score=70.92  Aligned_cols=34  Identities=21%  Similarity=0.374  Sum_probs=31.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus         4 ~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~   37 (501)
T 2qcu_A            4 KDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDL   37 (501)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSST
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            5899999999999999999999999999999754

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.38  E-value=2.4e-07  Score=66.73  Aligned_cols=38  Identities=21%  Similarity=0.295  Sum_probs=33.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .+|+|||||++|+++|..|++.|++|+|+|+.  .||.|.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~--~gG~~~   39 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQIL   39 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC--CCceec
Confidence            58999999999999999999999999999863  566654

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.38  E-value=1.9e-07  Score=71.09  Aligned_cols=35  Identities=9%  Similarity=0.214  Sum_probs=33.3

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCC-----CeEEEEeeCCCCc
Q 038409            4 HAALIGAGTAGLGATRELSREG-----YLLVVFERAKGLT   38 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g-----~~v~v~Er~~~~G   38 (143)
                      +|+|||||++|+++|..|++.|     ++|+|+|+.+.+|
T Consensus        32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g   71 (463)
T 3s5w_A           32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR   71 (463)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC
T ss_pred             CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC
Confidence            7999999999999999999999     9999999998776

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.38  E-value=3.3e-07  Score=69.72  Aligned_cols=37  Identities=27%  Similarity=0.452  Sum_probs=33.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCc
Q 038409            2 SCHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLT   38 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~G   38 (143)
                      +++|+|||||++|+++|..|++.  +++|+|+|+.+..+
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~   41 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVS   41 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccc
Confidence            37999999999999999999987  78999999988654

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.37  E-value=3.6e-07  Score=71.80  Aligned_cols=35  Identities=20%  Similarity=0.256  Sum_probs=32.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .+|+|||||++|+++|+.|+++|++|+|+|+.+..
T Consensus        33 ~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~   67 (571)
T 2rgh_A           33 LDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFA   67 (571)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            58999999999999999999999999999997643

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.36  E-value=2.5e-06  Score=65.34  Aligned_cols=34  Identities=9%  Similarity=0.019  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|||+|.+|+.+|..|++.|.+|+++++++
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~  230 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRT  230 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECC
Confidence            5789999999999999999999999999999864

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.36  E-value=4.9e-07  Score=68.14  Aligned_cols=35  Identities=31%  Similarity=0.361  Sum_probs=32.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||||.+|+.+|..|++.|++|+|+|+++.
T Consensus         1 m~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~   35 (443)
T 3g5s_A            1 MERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK   35 (443)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred             CCCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            37999999999999999999999999999998774

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.36  E-value=2.8e-07  Score=72.58  Aligned_cols=41  Identities=29%  Similarity=0.464  Sum_probs=35.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC-C-------CCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA-K-------GLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~-~-------~~Gg~~~   42 (143)
                      .++|+|||||++|+++|..|++.|++|+|+|+. +       .+||.|.
T Consensus       107 ~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~  155 (598)
T 2x8g_A          107 DYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCV  155 (598)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHH
T ss_pred             cccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEe
Confidence            358999999999999999999999999999973 2       3677653

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.36  E-value=3.3e-07  Score=68.51  Aligned_cols=35  Identities=17%  Similarity=0.309  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREG--YLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~   36 (143)
                      +|||+|||||++|+++|..|++.+  .+|+|+|+++.
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            699999999999999999998875  58999998765

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.36  E-value=3.7e-07  Score=71.56  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=33.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ   39 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg   39 (143)
                      .+|+|||||++|+++|+.|+++|.+|+|+|+.+..+|
T Consensus        19 ~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~G   55 (561)
T 3da1_A           19 LDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASG   55 (561)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCC
Confidence            4799999999999999999999999999999865443

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.35  E-value=5.6e-07  Score=67.77  Aligned_cols=35  Identities=17%  Similarity=0.307  Sum_probs=32.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  179 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR  179 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCc
Confidence            47899999999999999999999999999998653

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.35  E-value=2.9e-07  Score=76.31  Aligned_cols=41  Identities=34%  Similarity=0.503  Sum_probs=38.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      ++|+|||||++|+++|..|++.|++|+|+|+.+.+||.|.+
T Consensus       129 ~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~  169 (965)
T 2gag_A          129 TDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLD  169 (965)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGG
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceecc
Confidence            57999999999999999999999999999999889988763

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.34  E-value=3.9e-07  Score=72.80  Aligned_cols=34  Identities=32%  Similarity=0.584  Sum_probs=31.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHH-----CCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSR-----EGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~-----~g~~v~v~Er~~~   36 (143)
                      .+|+|||||++||++|+.|++     .|++|+|+||++.
T Consensus         9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~   47 (665)
T 1pn0_A            9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   47 (665)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence            479999999999999999999     9999999999765

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.33  E-value=1.4e-07  Score=72.83  Aligned_cols=40  Identities=30%  Similarity=0.415  Sum_probs=36.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      ++|+|||||++|+++|..|++. ++|+|||+.+.+||.+.+
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~  148 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWL  148 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGG
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeec
Confidence            4799999999999999999999 999999999888877653

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.32  E-value=4.8e-07  Score=71.31  Aligned_cols=35  Identities=29%  Similarity=0.432  Sum_probs=32.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .+|+|||||++|+++|+.|++.|.+|+|+||.+..
T Consensus         8 ~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~   42 (588)
T 2wdq_A            8 FDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPT   42 (588)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            37999999999999999999999999999998654

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.32  E-value=4.1e-07  Score=70.03  Aligned_cols=37  Identities=19%  Similarity=0.394  Sum_probs=33.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC---CeEEEEeeCCCCc
Q 038409            2 SCHAALIGAGTAGLGATRELSREG---YLLVVFERAKGLT   38 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g---~~v~v~Er~~~~G   38 (143)
                      .++|+|||||++|+++|..|++.|   .+|+|+|+.+.++
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~   74 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNIS   74 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCC
Confidence            368999999999999999999987   9999999987643

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.31  E-value=6.9e-07  Score=67.77  Aligned_cols=35  Identities=20%  Similarity=0.345  Sum_probs=32.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~~   36 (143)
                      .++|+|||||++|+++|..|++.|+  +|+++|+.+.
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~   40 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATV   40 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCS
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCC
Confidence            4689999999999999999999998  7999998765

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.29  E-value=4.6e-07  Score=68.76  Aligned_cols=35  Identities=29%  Similarity=0.489  Sum_probs=32.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHH---CCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSR---EGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~---~g~~v~v~Er~~~   36 (143)
                      +++|+|||||++|+++|..|++   .|++|+|+|+.+.
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~   41 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDY   41 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCC
Confidence            4799999999999999999999   8999999999875

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.29  E-value=6.8e-07  Score=67.95  Aligned_cols=36  Identities=17%  Similarity=0.268  Sum_probs=32.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~G   38 (143)
                      |+|+|||||++|+++|..|++.  |.+|+|+|+.+..|
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~   38 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS   38 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccC
Confidence            5899999999999999999997  89999999987654

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.29  E-value=5.7e-07  Score=70.61  Aligned_cols=38  Identities=24%  Similarity=0.364  Sum_probs=34.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT   40 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~   40 (143)
                      ++|+|||+|++|+++|+.|++.|++|+|+|+.+..||.
T Consensus       127 ~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~  164 (572)
T 1d4d_A          127 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGN  164 (572)
T ss_dssp             CSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence            47999999999999999999999999999998876543

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.29  E-value=6.3e-07  Score=73.11  Aligned_cols=35  Identities=26%  Similarity=0.452  Sum_probs=32.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      ..+|+|||||++|+++|+.|+++|+ +|+|+|+...
T Consensus         4 ~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~   39 (830)
T 1pj5_A            4 TPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL   39 (830)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence            3589999999999999999999999 9999999765

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.28  E-value=1.4e-06  Score=64.97  Aligned_cols=35  Identities=31%  Similarity=0.436  Sum_probs=32.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++++|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  179 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQ  179 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcc
Confidence            57899999999999999999999999999998653

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.28  E-value=7.9e-07  Score=67.67  Aligned_cols=35  Identities=14%  Similarity=0.231  Sum_probs=32.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~   37 (143)
                      ++|+|||||++|+++|..|++.  |.+|+|+|+.+.+
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNI   37 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            5799999999999999999998  9999999998764

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.27  E-value=8.3e-07  Score=70.45  Aligned_cols=39  Identities=23%  Similarity=0.415  Sum_probs=35.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      .+|+|||||++|+++|..|++.|++|+|+|+.+..||.+
T Consensus        47 ~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~   85 (623)
T 3pl8_A           47 YDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK   85 (623)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence            479999999999999999999999999999988776533

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.27  E-value=6.4e-07  Score=69.91  Aligned_cols=36  Identities=25%  Similarity=0.472  Sum_probs=32.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ   39 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg   39 (143)
                      .+|+|||||++|+++|+.|++ |.+|+|+||.+..+|
T Consensus         9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g   44 (540)
T 1chu_A            9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEG   44 (540)
T ss_dssp             CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC-
T ss_pred             CCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCC
Confidence            479999999999999999999 999999999876543

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.27  E-value=7.4e-07  Score=70.71  Aligned_cols=34  Identities=32%  Similarity=0.425  Sum_probs=31.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||++|+++|+.|++.|.+|+|+|+.+.
T Consensus        19 ~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~   52 (621)
T 2h88_A           19 FDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFP   52 (621)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCG
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            3799999999999999999999999999999764

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.26  E-value=8.3e-07  Score=68.16  Aligned_cols=31  Identities=32%  Similarity=0.503  Sum_probs=29.9

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +|+|||+|++|+++|+.|++.|.+|+|+|+.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            5899999999999999999999999999998

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.26  E-value=9.7e-07  Score=66.47  Aligned_cols=36  Identities=28%  Similarity=0.462  Sum_probs=32.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~~~   37 (143)
                      .++|+|||||++|+++|..|++.|+  +|+++|+.+..
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~   44 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER   44 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSC
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCC
Confidence            4689999999999999999999998  49999998753

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.25  E-value=7.3e-07  Score=69.26  Aligned_cols=38  Identities=21%  Similarity=0.296  Sum_probs=33.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ++|+|||||++|+++|..|++.|++|+++|+  ..||.|.
T Consensus       213 ~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~  250 (521)
T 1hyu_A          213 YDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVL  250 (521)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGT
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCccc
Confidence            5799999999999999999999999999986  3566664

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.24  E-value=1.5e-06  Score=66.14  Aligned_cols=35  Identities=20%  Similarity=0.301  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++++|||+|..|+-+|..|++.|.+|+++|+.+.
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  181 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDK  181 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSC
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeeecc
Confidence            46899999999999999999999999999998643

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.23  E-value=1e-06  Score=67.66  Aligned_cols=37  Identities=24%  Similarity=0.407  Sum_probs=32.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCc
Q 038409            2 SCHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLT   38 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~G   38 (143)
                      +++|+|||||++|+++|..|++.  |.+|+|+|+.+..+
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~   74 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYS   74 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCS
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCC
Confidence            36899999999999999999986  89999999987653

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.22  E-value=7.8e-07  Score=67.75  Aligned_cols=35  Identities=23%  Similarity=0.298  Sum_probs=32.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|.+|+.+|..|++.|.+|+++|+.+.
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~  201 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDR  201 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCc
Confidence            47899999999999999999999999999998653

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.22  E-value=9.3e-07  Score=70.59  Aligned_cols=35  Identities=29%  Similarity=0.453  Sum_probs=32.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .+|+|||||++|+++|+.|++.|.+|+|+|+.+..
T Consensus         6 ~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~   40 (660)
T 2bs2_A            6 CDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK   40 (660)
T ss_dssp             CSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred             ccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            47999999999999999999999999999997653

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.20  E-value=4.1e-07  Score=68.52  Aligned_cols=35  Identities=14%  Similarity=0.326  Sum_probs=32.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~  177 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDE  177 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCc
Confidence            57899999999999999999999999999998653

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.19  E-value=1.1e-06  Score=69.37  Aligned_cols=35  Identities=23%  Similarity=0.386  Sum_probs=32.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREG--YLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~~   37 (143)
                      .+|+|||||++|+++|+.|++.|  .+|+|+|+.+..
T Consensus         6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~   42 (602)
T 1kf6_A            6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPM   42 (602)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGG
T ss_pred             CCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            47999999999999999999999  999999997653

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.19  E-value=5.7e-06  Score=62.83  Aligned_cols=34  Identities=9%  Similarity=0.039  Sum_probs=31.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYL-LVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~-v~v~Er~~   35 (143)
                      +++|+|||+|.+|+-+|..|++.+.+ |++++|++
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~  246 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG  246 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCC
Confidence            57899999999999999999999998 99998853

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.18  E-value=1.4e-07  Score=73.03  Aligned_cols=23  Identities=22%  Similarity=0.170  Sum_probs=20.6

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCC
Q 038409            4 HAALIGAGTAGLGATRELSREGY   26 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~   26 (143)
                      +|+|||+|++||++|.+|++.|.
T Consensus        41 Dvi~IGaGp~gLa~A~~L~~~~~   63 (501)
T 4b63_A           41 DLLCVGFGPASLAIAIALHDALD   63 (501)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHC
T ss_pred             cEEEEcccHHHHHHHHHHHhcCC
Confidence            69999999999999999987654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.18  E-value=1.8e-06  Score=64.98  Aligned_cols=35  Identities=29%  Similarity=0.398  Sum_probs=32.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  186 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPR  186 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc
Confidence            57899999999999999999999999999998653

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.16  E-value=1.9e-06  Score=64.22  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=30.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREG--YLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~   35 (143)
                      ++|+|||||++|+++|..|++.|  .+|+++|+.+
T Consensus         5 ~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            5 APLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            68999999999999999999998  5689999875

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.15  E-value=1.9e-06  Score=68.58  Aligned_cols=33  Identities=24%  Similarity=0.361  Sum_probs=31.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      .+|+|||||++|+++|++|++.|.+|+|+|+..
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   61 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI   61 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecc
Confidence            479999999999999999999999999999974

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.15  E-value=8.9e-07  Score=66.46  Aligned_cols=35  Identities=31%  Similarity=0.353  Sum_probs=31.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|.+.|.+|+++|+.+.
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  176 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPR  176 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCc
Confidence            46899999999999999999999999999998643

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.15  E-value=2e-06  Score=68.29  Aligned_cols=36  Identities=22%  Similarity=0.387  Sum_probs=32.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC-CCc
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK-GLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~-~~G   38 (143)
                      .+|+|||||++|+++|++|++.|.+|+|+|+.+ .+|
T Consensus        22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG   58 (641)
T 3cp8_A           22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVA   58 (641)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccC
Confidence            589999999999999999999999999999975 344

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.14  E-value=1.9e-06  Score=66.52  Aligned_cols=35  Identities=29%  Similarity=0.451  Sum_probs=31.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~   37 (143)
                      ++|+|||||++|+++|..|++.  |.+|+|+|+.+..
T Consensus        12 ~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~   48 (493)
T 1m6i_A           12 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   48 (493)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            5799999999999999999887  8899999998654

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.14  E-value=2.1e-06  Score=68.08  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=32.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC-CCc
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK-GLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~-~~G   38 (143)
                      .+|+|||||++|+++|++|++.|.+|+|+|+.. .+|
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG   64 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIG   64 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccC
Confidence            479999999999999999999999999999974 344

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.13  E-value=1.6e-06  Score=66.09  Aligned_cols=35  Identities=23%  Similarity=0.278  Sum_probs=32.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  201 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA  201 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCc
Confidence            47899999999999999999999999999998653

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.12  E-value=2e-06  Score=63.94  Aligned_cols=34  Identities=18%  Similarity=0.401  Sum_probs=30.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +.+|+|||||++|+++|..|++.| +|+|+|+.+.
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~   41 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPV   41 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCC
Confidence            357999999999999999999999 9999999765

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.11  E-value=2e-06  Score=65.78  Aligned_cols=35  Identities=26%  Similarity=0.276  Sum_probs=32.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~  200 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDR  200 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence            47899999999999999999999999999998643

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.08  E-value=2.3e-06  Score=66.28  Aligned_cols=33  Identities=9%  Similarity=0.292  Sum_probs=31.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +||+|||||++|+.+|..|++.+++|+|+|+++
T Consensus        43 prVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~   75 (502)
T 4g6h_A           43 PNVLILGSGWGAISFLKHIDTKKYNVSIISPRS   75 (502)
T ss_dssp             CEEEEECSSHHHHHHHHHSCTTTCEEEEEESSS
T ss_pred             CCEEEECCcHHHHHHHHHhhhCCCcEEEECCCC
Confidence            589999999999999999999999999999975

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.05  E-value=3.1e-06  Score=65.34  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  210 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR  210 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            47899999999999999999999999999998653

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.05  E-value=3.5e-06  Score=64.07  Aligned_cols=35  Identities=17%  Similarity=0.398  Sum_probs=31.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREG--YLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~~   37 (143)
                      .||+|||||++|+++|..|++.|  .+|+|+|+.+..
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~   37 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   37 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            37999999999999999999987  479999997763

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.04  E-value=3.8e-06  Score=66.88  Aligned_cols=34  Identities=29%  Similarity=0.479  Sum_probs=31.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHH---H-CCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELS---R-EGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~---~-~g~~v~v~Er~~~   36 (143)
                      .+|+|||||++|+++|+.|+   + .|.+|+|+||.+.
T Consensus        23 ~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~   60 (643)
T 1jnr_A           23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   60 (643)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             CCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence            47999999999999999999   6 7999999999764

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.04  E-value=3.2e-06  Score=66.09  Aligned_cols=40  Identities=25%  Similarity=0.539  Sum_probs=35.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC--------CCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK--------GLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~--------~~Gg~~~   42 (143)
                      .+++|||+|++|+.+|..+++.|.+|.|+|+..        .+||+|.
T Consensus        43 YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCl   90 (542)
T 4b1b_A           43 YDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCV   90 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCccc
Confidence            479999999999999999999999999999743        3788764

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.03  E-value=3.9e-06  Score=67.07  Aligned_cols=34  Identities=21%  Similarity=0.291  Sum_probs=31.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC------CCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSRE------GYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~------g~~v~v~Er~~~   36 (143)
                      .+|+|||||++||++|+.|++.      |.+|+|+|+...
T Consensus        23 ~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~   62 (662)
T 3gyx_A           23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASL   62 (662)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCT
T ss_pred             cCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCC
Confidence            3799999999999999999997      999999999654

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.00  E-value=4.3e-06  Score=65.65  Aligned_cols=34  Identities=29%  Similarity=0.475  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  220 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMAN  220 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            4789999999999999999999999999999864

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.98  E-value=6e-06  Score=63.70  Aligned_cols=35  Identities=11%  Similarity=0.071  Sum_probs=31.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC---CCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSRE---GYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~---g~~v~v~Er~~~   36 (143)
                      +++++|||+|..|+.+|..|++.   |.+|+++|+.+.
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~  228 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNL  228 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCc
Confidence            46899999999999999999999   999999998643

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.96  E-value=8.7e-06  Score=63.45  Aligned_cols=35  Identities=29%  Similarity=0.391  Sum_probs=32.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++++.+.
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  185 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQ  185 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCc
Confidence            46899999999999999999999999999998653

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.93  E-value=1.4e-05  Score=61.78  Aligned_cols=35  Identities=14%  Similarity=0.284  Sum_probs=30.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSRE--GYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~   36 (143)
                      +|+|+|||+|.+|..++..|++.  +.+|+++-|++.
T Consensus       246 gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~  282 (501)
T 4b63_A          246 PYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSA  282 (501)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSS
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            57999999999999999999875  679999998764

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.92  E-value=1.1e-05  Score=58.70  Aligned_cols=32  Identities=22%  Similarity=0.286  Sum_probs=29.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +++|+|||+|.+|+.+|..|++.+ +|+++.++
T Consensus       163 ~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~  194 (357)
T 4a9w_A          163 GMRVAIIGGGNSGAQILAEVSTVA-ETTWITQH  194 (357)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTS-EEEEECSS
T ss_pred             CCEEEEECCCcCHHHHHHHHHhhC-CEEEEECC
Confidence            478999999999999999999998 79999876

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.91  E-value=1e-05  Score=63.03  Aligned_cols=34  Identities=29%  Similarity=0.486  Sum_probs=31.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+++|||+|++|+++|..|++.|.+|+|+|+.+.
T Consensus         8 ~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            8 YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             eeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            4799999999999999999999999999999764

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.91  E-value=8.8e-06  Score=62.67  Aligned_cols=35  Identities=14%  Similarity=0.074  Sum_probs=31.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC---CCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSRE---GYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~---g~~v~v~Er~~~   36 (143)
                      +++++|||+|..|+.+|..|++.   |.+|+++|+.+.
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~  224 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM  224 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCC
Confidence            47899999999999999999999   999999998653

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.84  E-value=1e-05  Score=61.82  Aligned_cols=34  Identities=29%  Similarity=0.373  Sum_probs=31.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC-CCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSRE-GYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~-g~~v~v~Er~~   35 (143)
                      +++|+|||+|.+|+.+|..|++. |.+|+++|+.+
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~  193 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELAD  193 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccC
Confidence            47899999999999999999999 99999999864

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.81  E-value=2e-05  Score=60.71  Aligned_cols=34  Identities=24%  Similarity=0.255  Sum_probs=29.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHH----CCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSR----EGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~----~g~~v~v~Er~~   35 (143)
                      +++|+|||+|..|+-+|..|++    .|.+|+++++.+
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~  217 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK  217 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCc
Confidence            4789999999999999999986    478899998753

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.79  E-value=1.6e-05  Score=61.29  Aligned_cols=35  Identities=17%  Similarity=0.281  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++++|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  216 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDH  216 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            47899999999999999999999999999998653

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.77  E-value=1.6e-05  Score=61.00  Aligned_cols=34  Identities=15%  Similarity=0.267  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++++|||+|..|+..|..|++.|.+|+++++.+
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~  224 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGD  224 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            4789999999999999999999999999999864

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.76  E-value=2.7e-05  Score=56.02  Aligned_cols=36  Identities=17%  Similarity=0.235  Sum_probs=33.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|..|+-+|..|++.|.+|+++|+.+.+
T Consensus       145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL  180 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence            478999999999999999999999999999998763

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.76  E-value=3.5e-05  Score=47.41  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREG-YLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~   36 (143)
                      |+++|+|+|+|..|..++..|.+.| ++|++++|++.
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~   40 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLA   40 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHH
Confidence            4679999999999999999999999 89999998643

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.74  E-value=2.1e-05  Score=60.69  Aligned_cols=34  Identities=24%  Similarity=0.456  Sum_probs=30.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHH-CCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSR-EGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~-~g~~v~v~Er~~~   36 (143)
                      .+++|||+|.+|+.+|..|++ .+++|+|+|+.+.
T Consensus        18 yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           18 CDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             eeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            479999999999999999998 5899999998753

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.71  E-value=4.2e-05  Score=55.78  Aligned_cols=35  Identities=29%  Similarity=0.359  Sum_probs=31.6

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |.++|+|||+|.-|...|..|++.|++|+++.|++
T Consensus         1 M~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            1 MSLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             --CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            67899999999999999999999999999999865

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.68  E-value=4.1e-05  Score=60.97  Aligned_cols=41  Identities=15%  Similarity=0.118  Sum_probs=38.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      ..+|+|||+|+.|...|..|++.|.+|.++||++..||.|.
T Consensus         8 ~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~   48 (650)
T 1vg0_A            8 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWA   48 (650)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccc
Confidence            35899999999999999999999999999999999998865

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.68  E-value=2.3e-05  Score=61.11  Aligned_cols=33  Identities=30%  Similarity=0.485  Sum_probs=30.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+++|||+|.+|+.+|..|++ |.+|.|+|+.+.
T Consensus        27 yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~   59 (536)
T 1ju2_A           27 YDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSL   59 (536)
T ss_dssp             EEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBC
T ss_pred             ccEEEECccHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            379999999999999999999 999999999755

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.68  E-value=5.1e-05  Score=48.54  Aligned_cols=35  Identities=29%  Similarity=0.520  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|+|+|..|..+|..|.+.|++|+++|+.+.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~   40 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKE   40 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            46899999999999999999999999999998654

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.66  E-value=5.8e-05  Score=58.33  Aligned_cols=34  Identities=21%  Similarity=0.274  Sum_probs=31.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+++|||+|++|+.+|..|.+.|.+|.|+|+...
T Consensus         6 ~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   39 (504)
T 1n4w_A            6 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   39 (504)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            4799999999999999999999999999998764

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.65  E-value=7.1e-05  Score=48.79  Aligned_cols=35  Identities=23%  Similarity=0.233  Sum_probs=31.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|+|+|..|..+|..|.+.|++|+++++++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            46899999999999999999999999999998643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.65  E-value=6.5e-05  Score=48.21  Aligned_cols=35  Identities=31%  Similarity=0.377  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|+|+|+|..|..+|..|.+.|++|+++|+.+.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            46899999999999999999999999999998754

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.64  E-value=4.3e-05  Score=55.50  Aligned_cols=35  Identities=34%  Similarity=0.389  Sum_probs=30.6

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |+++|+|||+|.-|.+.|..|++.|++|+++.|++
T Consensus         1 M~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            1 MSLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             ---CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            67899999999999999999999999999999865

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.62  E-value=4.4e-05  Score=60.12  Aligned_cols=34  Identities=24%  Similarity=0.410  Sum_probs=30.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREG-YLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~   36 (143)
                      .+++|||||.+|+++|..|++.+ .+|.|+|+.+.
T Consensus         7 yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            7 FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            47999999999999999999987 79999999765

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.61  E-value=9.8e-05  Score=46.72  Aligned_cols=35  Identities=23%  Similarity=0.366  Sum_probs=31.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .|+|+|+|+|..|...|..|.+.|++|+++++++.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~   38 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   38 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            36899999999999999999999999999998643

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.59  E-value=6.2e-05  Score=56.28  Aligned_cols=36  Identities=17%  Similarity=0.137  Sum_probs=33.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~  181 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYP  181 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc
Confidence            478999999999999999999999999999998764

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.56  E-value=0.0001  Score=55.85  Aligned_cols=36  Identities=19%  Similarity=0.360  Sum_probs=33.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|++|+.+|..|++.|.+|+++|+.+.+
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  184 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP  184 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccc
Confidence            478999999999999999999999999999997653

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.56  E-value=7.8e-05  Score=53.44  Aligned_cols=35  Identities=17%  Similarity=0.383  Sum_probs=32.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+-+|..|++.|.+|+++||.+.
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            47899999999999999999999999999998654

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.55  E-value=7.6e-05  Score=57.76  Aligned_cols=34  Identities=26%  Similarity=0.380  Sum_probs=31.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+++|||+|++|+.+|..|.+.|.+|.++|+...
T Consensus        12 ~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A           12 VPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            4799999999999999999999999999998753

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.55  E-value=5.9e-05  Score=54.34  Aligned_cols=35  Identities=29%  Similarity=0.333  Sum_probs=31.3

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |.++|+|||+|.-|...|..|.+.|++|+++.|++
T Consensus         1 M~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            1 MSLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            67899999999999999999999999999999874

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.55  E-value=8.7e-05  Score=56.57  Aligned_cols=36  Identities=22%  Similarity=0.336  Sum_probs=33.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|.+|+.+|..|++.|.+|+++|+.+.+
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  206 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI  206 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcc
Confidence            478999999999999999999999999999998764

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.54  E-value=0.00011  Score=56.09  Aligned_cols=35  Identities=23%  Similarity=0.294  Sum_probs=32.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  203 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPE  203 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCc
Confidence            47899999999999999999999999999999765

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.53  E-value=6.5e-05  Score=58.69  Aligned_cols=34  Identities=21%  Similarity=0.383  Sum_probs=31.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC-CCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSRE-GYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~-g~~v~v~Er~~~   36 (143)
                      .+++|||+|++|+++|..|++. |.+|.++|+...
T Consensus        14 ~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~   48 (546)
T 2jbv_A           14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPD   48 (546)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCc
Confidence            4799999999999999999998 899999999754

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.52  E-value=0.00011  Score=52.92  Aligned_cols=36  Identities=19%  Similarity=0.236  Sum_probs=31.5

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|+|+|||+|..|...|..|.+.|++|++++|++.
T Consensus         2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   37 (316)
T 2ew2_A            2 NAMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPA   37 (316)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            457999999999999999999999999999998643

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.51  E-value=0.00014  Score=55.34  Aligned_cols=36  Identities=19%  Similarity=0.299  Sum_probs=33.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  205 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI  205 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence            478999999999999999999999999999998653

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.50  E-value=0.00011  Score=56.13  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=32.7

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |.|+|+|||+|.-|+.+|..|++.|++|+++++.+.
T Consensus         1 M~mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~   36 (450)
T 3gg2_A            1 MSLDIAVVGIGYVGLVSATCFAELGANVRCIDTDRN   36 (450)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            668999999999999999999999999999998654

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.50  E-value=8e-05  Score=58.71  Aligned_cols=33  Identities=21%  Similarity=0.398  Sum_probs=30.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC-CCeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSRE-GYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~-g~~v~v~Er~~   35 (143)
                      .+++|||||.+|+++|..|++. +++|.|+|+.+
T Consensus        20 yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           20 VDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            4799999999999999999975 89999999976

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.48  E-value=0.00014  Score=54.01  Aligned_cols=35  Identities=29%  Similarity=0.489  Sum_probs=32.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      ++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  178 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF  178 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCee
Confidence            68999999999999999999999999999998763

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.48  E-value=0.00015  Score=55.48  Aligned_cols=36  Identities=28%  Similarity=0.335  Sum_probs=33.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  218 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI  218 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcc
Confidence            478999999999999999999999999999998764

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.45  E-value=0.00013  Score=57.42  Aligned_cols=34  Identities=21%  Similarity=0.312  Sum_probs=31.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHH-CCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSR-EGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~-~g~~v~v~Er~~~   36 (143)
                      .+++|||+|++|+++|..|.+ .|.+|.++|+...
T Consensus        25 ~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~   59 (587)
T 1gpe_A           25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (587)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCc
Confidence            479999999999999999999 7999999998754

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.44  E-value=0.00017  Score=45.77  Aligned_cols=34  Identities=26%  Similarity=0.353  Sum_probs=30.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|+|+|..|..+|..|.+.|++|+++++.+
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999753

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.42  E-value=0.00016  Score=52.41  Aligned_cols=34  Identities=32%  Similarity=0.337  Sum_probs=31.1

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |.|+|+|||+|.-|...|..|+ .|++|+++.|++
T Consensus         1 M~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            1 MSLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            7789999999999999999999 999999999875

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.40  E-value=0.00022  Score=54.77  Aligned_cols=35  Identities=23%  Similarity=0.398  Sum_probs=32.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  228 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDT  228 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccc
Confidence            47899999999999999999999999999999765

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.38  E-value=0.00021  Score=52.31  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=32.0

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |.++|.|||+|.-|...|..|.+.|++|+++.|.+
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            67899999999999999999999999999999864

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.38  E-value=7.7e-05  Score=58.60  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=30.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHH-CCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSR-EGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~-~g~~v~v~Er~~~   36 (143)
                      .+++|||||.+|+.+|..|++ .+.+|.|+|+.+.
T Consensus         3 yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~   37 (566)
T 3fim_B            3 FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVS   37 (566)
T ss_dssp             EEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBC
T ss_pred             cCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCc
Confidence            578999999999999999998 6899999998754

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.38  E-value=0.00035  Score=45.31  Aligned_cols=34  Identities=15%  Similarity=0.215  Sum_probs=31.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      .++|+|+|+|..|...|..|.+.|++|+++++.+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            3689999999999999999999999999999863

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.37  E-value=0.00021  Score=54.55  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=31.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|||.|.+|+++|..|++.|++|+++|+++
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            4799999999999999999999999999999854

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.35  E-value=0.00019  Score=52.35  Aligned_cols=35  Identities=23%  Similarity=0.248  Sum_probs=32.7

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREG-YLLVVFERAK   35 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~   35 (143)
                      |+++|.|||.|.-|...|..|.+.| ++|+++++.+
T Consensus        23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            5678999999999999999999999 9999999875

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.35  E-value=0.00026  Score=51.06  Aligned_cols=34  Identities=24%  Similarity=0.464  Sum_probs=31.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|||+|.-|...|..|++.|++|+++++++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3689999999999999999999999999999864

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.34  E-value=0.00021  Score=54.75  Aligned_cols=35  Identities=31%  Similarity=0.346  Sum_probs=32.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~  219 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG  219 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCc
Confidence            47899999999999999999999999999999865

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.34  E-value=0.0003  Score=54.16  Aligned_cols=36  Identities=33%  Similarity=0.532  Sum_probs=33.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  209 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSV  209 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc
Confidence            478999999999999999999999999999998764

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.33  E-value=0.00029  Score=50.47  Aligned_cols=34  Identities=12%  Similarity=0.345  Sum_probs=31.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||+|.-|...|..|++.|++|+++++++.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            6899999999999999999999999999998754

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.33  E-value=0.00029  Score=53.67  Aligned_cols=35  Identities=20%  Similarity=0.197  Sum_probs=32.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  205 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPR  205 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            47899999999999999999999999999999865

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=97.32  E-value=0.00031  Score=49.97  Aligned_cols=34  Identities=18%  Similarity=0.235  Sum_probs=31.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|+|||+|..|...|..|.+.|++|++++|.+.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            4799999999999999999999999999998765

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.32  E-value=0.00029  Score=53.77  Aligned_cols=36  Identities=22%  Similarity=0.219  Sum_probs=33.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  213 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHV  213 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCcc
Confidence            478999999999999999999999999999998753

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=97.30  E-value=0.00021  Score=52.33  Aligned_cols=34  Identities=12%  Similarity=0.304  Sum_probs=31.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||..|...|..+++.|++|++||.++.
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~   40 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR   40 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            5899999999999999999999999999997644

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.30  E-value=0.00023  Score=47.49  Aligned_cols=35  Identities=26%  Similarity=0.406  Sum_probs=31.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC-CCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSRE-GYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~-g~~v~v~Er~~~   36 (143)
                      +++|+|+|+|..|..+|..|.+. |++|+++|+++.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~   74 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREE   74 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHH
Confidence            35899999999999999999999 999999998654

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.29  E-value=0.00035  Score=47.84  Aligned_cols=35  Identities=11%  Similarity=0.254  Sum_probs=31.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|.|||+|..|.+.|..|.+.|++|++++|++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46899999999999999999999999999998754

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.28  E-value=0.00029  Score=49.90  Aligned_cols=36  Identities=19%  Similarity=0.279  Sum_probs=32.6

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|+|+|.|||..|..++..|.++|++|+++.|++.
T Consensus         4 m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (286)
T 3ius_A            4 MTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPD   39 (286)
T ss_dssp             -CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChh
Confidence            678999999999999999999999999999998754

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.28  E-value=0.00039  Score=51.03  Aligned_cols=36  Identities=25%  Similarity=0.388  Sum_probs=32.4

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      |+++|+|||||..|..+|..|++.|+ +|+++++.+.
T Consensus        13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~   49 (328)
T 2hjr_A           13 MRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG   49 (328)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            34689999999999999999999999 9999998765

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.27  E-value=0.00023  Score=51.34  Aligned_cols=35  Identities=14%  Similarity=0.153  Sum_probs=32.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|.|||.|.-|...|..|.+.|++|++++|++.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            35899999999999999999999999999998765

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.27  E-value=0.00032  Score=50.18  Aligned_cols=36  Identities=25%  Similarity=0.335  Sum_probs=32.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|.+|+.+|..|++.|.+|+++++.+.+
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  179 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  179 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCccc
Confidence            478999999999999999999999999999987654

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.27  E-value=0.00034  Score=50.49  Aligned_cols=35  Identities=26%  Similarity=0.416  Sum_probs=32.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|.|||+|.-|...|..|.+.|++|++++|++.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   41 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQ   41 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            46899999999999999999999999999998754

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.27  E-value=0.00033  Score=51.25  Aligned_cols=35  Identities=20%  Similarity=0.471  Sum_probs=30.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|+|||+|.+|+.+|..|++.|.+|+++++.+.
T Consensus       166 ~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~  200 (369)
T 3d1c_A          166 KGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTG  200 (369)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred             CCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCC
Confidence            36899999999999999999999999999998643

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.27  E-value=0.00037  Score=52.74  Aligned_cols=35  Identities=17%  Similarity=0.305  Sum_probs=32.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~  183 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR  183 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCc
Confidence            47899999999999999999999999999998765

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.26  E-value=0.00033  Score=50.79  Aligned_cols=35  Identities=20%  Similarity=0.454  Sum_probs=32.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||.|.-|...|..|.+.|++|++++|++.
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            47899999999999999999999999999998755

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.26  E-value=0.00043  Score=48.52  Aligned_cols=35  Identities=23%  Similarity=0.295  Sum_probs=32.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|.|||+|.-|.+.|..|.+.|++|++++|++.
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            57899999999999999999999999999998643

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.24  E-value=0.00038  Score=48.74  Aligned_cols=36  Identities=14%  Similarity=0.314  Sum_probs=33.1

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCC----eEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGY----LLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~----~v~v~Er~~~   36 (143)
                      |+++|.|||+|.-|...|..|.+.|+    +|.+++|++.
T Consensus         1 M~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~   40 (247)
T 3gt0_A            1 MDKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTA   40 (247)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHH
T ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHH
Confidence            67899999999999999999999998    9999998654

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=97.24  E-value=0.00023  Score=54.06  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|.|||.|.+|+++|..|.+.|++|+++|.+..
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~   39 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSS
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCC
Confidence            57999999999999999999999999999998654

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=97.23  E-value=0.00043  Score=50.32  Aligned_cols=36  Identities=25%  Similarity=0.395  Sum_probs=31.7

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      |++||+|||+|..|...|..|...|+ ++.++|..+.
T Consensus         1 M~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~   37 (309)
T 1ur5_A            1 MRKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   37 (309)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCcc
Confidence            67899999999999999999999997 9999997653

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.23  E-value=0.00043  Score=49.51  Aligned_cols=35  Identities=17%  Similarity=0.273  Sum_probs=32.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|.+|+.+|..|++.|.+|+++++.+.
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  177 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDG  177 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence            47899999999999999999999999999998764

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.23  E-value=0.00042  Score=53.09  Aligned_cols=35  Identities=17%  Similarity=0.215  Sum_probs=32.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++++|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  219 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGET  219 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCc
Confidence            47899999999999999999999999999999765

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.23  E-value=0.00015  Score=58.08  Aligned_cols=35  Identities=11%  Similarity=0.101  Sum_probs=31.4

Q ss_pred             CCcEEEEc--CCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIG--AGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIG--aG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||  +|..|+.+|..|.+.|.+|+++++.+.
T Consensus       523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~  559 (690)
T 3k30_A          523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQ  559 (690)
T ss_dssp             SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccc
Confidence            36799999  999999999999999999999998643

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=97.23  E-value=0.00025  Score=52.72  Aligned_cols=36  Identities=8%  Similarity=0.145  Sum_probs=32.5

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCC-------CeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREG-------YLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g-------~~v~v~Er~~~   36 (143)
                      |+++|+|||+|.-|.+.|..|.+.|       ++|++++|.+.
T Consensus        20 ~~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           20 GPLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             SCBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            4578999999999999999999999       99999998754

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.23  E-value=0.00025  Score=54.38  Aligned_cols=35  Identities=23%  Similarity=0.362  Sum_probs=32.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|.+|+.+|..|++.|.+|+++|+.+.
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  220 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDH  220 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCc
Confidence            47899999999999999999999999999998765

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.22  E-value=0.00049  Score=52.19  Aligned_cols=36  Identities=17%  Similarity=0.367  Sum_probs=33.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .++|+|||+|..|+.+|..|++.|.+|+++++.+.+
T Consensus       148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  183 (449)
T 3kd9_A          148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERV  183 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc
Confidence            368999999999999999999999999999998763

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.22  E-value=0.00028  Score=51.01  Aligned_cols=36  Identities=36%  Similarity=0.533  Sum_probs=29.8

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |.+||.+||-|.-|..+|..|.++|++|++|+|++.
T Consensus         4 Ms~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            4 MSEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             CCCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            667999999999999999999999999999998755

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.22  E-value=0.00025  Score=54.01  Aligned_cols=36  Identities=31%  Similarity=0.330  Sum_probs=33.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  212 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI  212 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence            478999999999999999999999999999998753

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.21  E-value=0.00027  Score=48.56  Aligned_cols=34  Identities=18%  Similarity=0.332  Sum_probs=31.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|+|+|+|..|...|..|.+.|++|+++|+.+.
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~   34 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRE   34 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            5899999999999999999999999999998654

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.20  E-value=0.00045  Score=50.59  Aligned_cols=33  Identities=24%  Similarity=0.329  Sum_probs=31.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      .++|+|||+|.-|...|..|++.|++|+++.|.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            379999999999999999999999999999985

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.19  E-value=0.0005  Score=52.39  Aligned_cols=35  Identities=23%  Similarity=0.313  Sum_probs=32.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  210 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTL  210 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCc
Confidence            47899999999999999999999999999998765

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.19  E-value=0.00051  Score=49.10  Aligned_cols=35  Identities=29%  Similarity=0.370  Sum_probs=31.9

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||+ |..|...|..|.+.|++|++++|++.
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~   46 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPE   46 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            469999999 99999999999999999999998643

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.19  E-value=0.00047  Score=50.01  Aligned_cols=34  Identities=29%  Similarity=0.377  Sum_probs=31.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      +++|+|||+|..|...|..|.+.|+  +|+++++.+
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4789999999999999999999999  999999864

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.19  E-value=0.00051  Score=52.14  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=32.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  183 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHER  183 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence            47899999999999999999999999999998765

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.18  E-value=0.00051  Score=52.35  Aligned_cols=35  Identities=29%  Similarity=0.299  Sum_probs=32.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++++|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  208 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPR  208 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCc
Confidence            47899999999999999999999999999999765

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.16  E-value=0.00046  Score=49.82  Aligned_cols=36  Identities=19%  Similarity=0.360  Sum_probs=32.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|.+|+.+|..|++.|.+|+++++.+.+
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  194 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF  194 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcC
Confidence            468999999999999999999999999999987653

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=97.16  E-value=0.00047  Score=51.13  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=31.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|+|||+|.-|.+.|..|++.|++|+++.|.+.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~   63 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESD   63 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            36899999999999999999999999999998643

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=97.15  E-value=0.00037  Score=50.41  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=31.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .|+|.|||+|.-|...|..|+ .|++|+++++++.
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~   45 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEK   45 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHH
Confidence            478999999999999999999 9999999998754

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.15  E-value=0.0005  Score=49.58  Aligned_cols=36  Identities=22%  Similarity=0.316  Sum_probs=32.2

Q ss_pred             CCCcEEEEc-CCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIG-AGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIG-aG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+++|.||| +|..|.+.|..|.+.|++|+++++++.
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            346899999 999999999999999999999998653

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.14  E-value=0.00048  Score=49.26  Aligned_cols=35  Identities=23%  Similarity=0.452  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .|+|.|||+|..|...|..|.+.|++|++++|++.
T Consensus         1 s~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            1 SQKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            37899999999999999999999999999998755

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.14  E-value=0.0005  Score=50.04  Aligned_cols=35  Identities=26%  Similarity=0.434  Sum_probs=31.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      .++|+|||+|..|...|..|.+.|+ +|+++++.+.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~   39 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEG   39 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCch
Confidence            3689999999999999999999998 9999998764

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.14  E-value=0.00056  Score=49.77  Aligned_cols=34  Identities=24%  Similarity=0.347  Sum_probs=30.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|+|||+|.-|...|..|++.|++|+++ +++.
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~   52 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQ   52 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHh
Confidence            578999999999999999999999999999 6543

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.14  E-value=0.0002  Score=49.39  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEE-EeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVV-FERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v-~Er~~~   36 (143)
                      +++|.|||+|..|.+.|..|.+.|++|++ ++|++.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~   58 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA   58 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence            47999999999999999999999999999 887654

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.14  E-value=0.00028  Score=50.48  Aligned_cols=35  Identities=23%  Similarity=0.399  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||.|.-|...|..|.+.|++|++++|++.
T Consensus         1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            36899999999999999999999999999998765

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.13  E-value=0.00044  Score=49.59  Aligned_cols=36  Identities=33%  Similarity=0.563  Sum_probs=31.2

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |.++|.|||+|..|...|..|.+.|++|.++++.+.
T Consensus         4 M~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~   39 (299)
T 1vpd_A            4 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   39 (299)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ccceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            456999999999999999999999999999998643

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.13  E-value=0.00052  Score=49.81  Aligned_cols=36  Identities=19%  Similarity=0.302  Sum_probs=32.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|.+|+.+|..|++.|.+|+++++++.+
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~  190 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEF  190 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcC
Confidence            478999999999999999999999999999987653

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.12  E-value=0.00057  Score=49.01  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=32.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|.+|+.+|..|++.|.+|+++++.+.
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  179 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG  179 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCc
Confidence            47899999999999999999999999999998754

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=97.11  E-value=0.00056  Score=52.66  Aligned_cols=35  Identities=23%  Similarity=0.350  Sum_probs=32.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|+|||+|.-|+.+|..|++.|++|+++++.+.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~   42 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQA   42 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            47999999999999999999999999999998644

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.11  E-value=0.0003  Score=52.74  Aligned_cols=32  Identities=16%  Similarity=0.279  Sum_probs=29.2

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHH-CCCeEEEEe
Q 038409            1 MSCHAALIGAGTAGLGATRELSR-EGYLLVVFE   32 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~-~g~~v~v~E   32 (143)
                      |+|+|+|||+|..|.+.|..|++ .|++|++++
T Consensus         1 ~~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            1 MTVKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             CCceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            56899999999999999999988 599999999

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.11  E-value=0.00061  Score=49.96  Aligned_cols=34  Identities=18%  Similarity=0.273  Sum_probs=31.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||+|..|...|..|++.|++|++++|.+.
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~   38 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ   38 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            5899999999999999999999999999998643

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.11  E-value=0.00057  Score=50.18  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=31.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      +||+|||||..|.++|..|++.|+ +|+++++.+.
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~   44 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   44 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            589999999999999999999998 9999998764

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.11  E-value=0.00067  Score=51.82  Aligned_cols=35  Identities=20%  Similarity=0.229  Sum_probs=32.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++++.+.
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  221 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK  221 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCc
Confidence            47899999999999999999999999999999765

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.10  E-value=0.00058  Score=49.22  Aligned_cols=35  Identities=20%  Similarity=0.234  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|.+|+.+|..|++.|.+|+++++.+.
T Consensus       152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  186 (325)
T 2q7v_A          152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDT  186 (325)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCc
Confidence            46899999999999999999999999999998754

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=97.09  E-value=0.00031  Score=51.92  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=30.2

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|+|||+|.-|...|..|.+.|++|++++|.+
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            89999999999999999999999999999864

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.09  E-value=0.00056  Score=52.49  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=33.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|.+|+.+|..|++.|.+|+++|+.+.+
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  233 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTI  233 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccc
Confidence            478999999999999999999999999999988763

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.09  E-value=0.00077  Score=51.41  Aligned_cols=35  Identities=23%  Similarity=0.256  Sum_probs=32.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++++.+.
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  206 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDR  206 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCc
Confidence            47899999999999999999999999999998765

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.07  E-value=0.00039  Score=52.75  Aligned_cols=35  Identities=23%  Similarity=0.270  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSRE--GYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~   36 (143)
                      +++|+|||+|.+|+.+|..|++.  +.+|++++|++.
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~  263 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASA  263 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSS
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence            46899999999999999999998  889999999764

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.06  E-value=0.00078  Score=49.05  Aligned_cols=35  Identities=17%  Similarity=0.352  Sum_probs=31.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~~   36 (143)
                      .++|.|||+|..|.+.|..|++.|+  +|+++++++.
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~   69 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE   69 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHH
Confidence            3789999999999999999999999  9999998753

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.06  E-value=0.00064  Score=49.52  Aligned_cols=35  Identities=31%  Similarity=0.629  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||.|..|...|..|.+.|++|++++|.+.
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   65 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPA   65 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            36899999999999999999999999999998754

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=97.05  E-value=0.00068  Score=52.22  Aligned_cols=35  Identities=17%  Similarity=0.318  Sum_probs=32.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC-CC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSRE-GY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~-g~-~v~v~Er~~~   36 (143)
                      .++|+|||+|.-|+.+|..|++. |+ +|+++++.+.
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            36899999999999999999999 99 9999998765

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.05  E-value=0.00085  Score=46.10  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=31.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|...|..|.+.|++|++++|++.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~   62 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNPK   62 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998643

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.05  E-value=0.00078  Score=48.76  Aligned_cols=35  Identities=23%  Similarity=0.467  Sum_probs=32.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||.|.-|...|..|.+.|++|++++|++.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   43 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPG   43 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998754

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=97.05  E-value=0.00092  Score=49.26  Aligned_cols=35  Identities=17%  Similarity=0.274  Sum_probs=32.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ||+|+|+|+|..|..++.++++.|+++.+++..+.
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            58999999999999999999999999999997654

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.05  E-value=0.00055  Score=49.46  Aligned_cols=35  Identities=11%  Similarity=0.215  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|.+|+.+|..|.+.|.+|+++++.+.
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~  186 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ  186 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCc
Confidence            47899999999999999999999999999998764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.02  E-value=0.00078  Score=52.94  Aligned_cols=33  Identities=24%  Similarity=0.235  Sum_probs=31.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +++|+|||+|.+|+.+|..|++.|.+|+++++.
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            468999999999999999999999999999986

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.01  E-value=0.0011  Score=50.34  Aligned_cols=35  Identities=34%  Similarity=0.402  Sum_probs=32.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++++|||+|..|+.+|..|++.|.+|+++++.+.
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  181 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLEN  181 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc
Confidence            47899999999999999999999999999998765

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=97.00  E-value=0.00079  Score=51.59  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=31.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||+|.-|..+|..|++.|++|+++++++.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            6899999999999999999999999999998654

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.98  E-value=0.0011  Score=50.08  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +.+|+|||+|..|+.+|..|...|.+|+++++++.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46899999999999999999999999999998765

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=96.98  E-value=0.0012  Score=50.46  Aligned_cols=35  Identities=29%  Similarity=0.355  Sum_probs=32.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+++++.+.
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  214 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK  214 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            47899999999999999999999999999999865

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=96.97  E-value=0.00095  Score=51.01  Aligned_cols=35  Identities=20%  Similarity=0.381  Sum_probs=31.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..+.+.|. +|++++|++.
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR  299 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence            4789999999999999999999988 5999998754

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.97  E-value=0.00038  Score=44.70  Aligned_cols=35  Identities=20%  Similarity=0.195  Sum_probs=31.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|...+..|.+.|+++++++|.+.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~   55 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNID   55 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence            57899999999999999999999999999998643

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.96  E-value=0.00075  Score=52.34  Aligned_cols=36  Identities=25%  Similarity=0.335  Sum_probs=32.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|.+|+.+|..|++.|.+|+++++.+.+
T Consensus       355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l  390 (521)
T 1hyu_A          355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  390 (521)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCccc
Confidence            478999999999999999999999999999987653

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.95  E-value=0.0011  Score=48.39  Aligned_cols=35  Identities=17%  Similarity=0.196  Sum_probs=31.3

Q ss_pred             CCcEEEEcCCHHHHH-HHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLG-ATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~-~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|.|||.|-+|++ +|..|.+.|++|+++|+++.
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            579999999999996 88899999999999998653

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=96.95  E-value=0.00087  Score=48.18  Aligned_cols=35  Identities=20%  Similarity=0.171  Sum_probs=32.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|.+|+.+|..|.+.|.+|+++++.+.
T Consensus       155 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~  189 (319)
T 3cty_A          155 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPK  189 (319)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCc
Confidence            46899999999999999999999999999998764

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=96.95  E-value=0.00092  Score=52.26  Aligned_cols=35  Identities=23%  Similarity=0.244  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++++|||||..|+-.|..+++.|.+|+|+++...
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~  257 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIV  257 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCS
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCeEEEeccccc
Confidence            57899999999999999999999999999997544

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=96.95  E-value=0.00097  Score=47.99  Aligned_cols=35  Identities=20%  Similarity=0.290  Sum_probs=32.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|.+|+.+|..|.+.|.+|+++++.+.
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~  207 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDH  207 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence            47899999999999999999999999999998754

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=96.93  E-value=0.001  Score=51.01  Aligned_cols=34  Identities=26%  Similarity=0.432  Sum_probs=31.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||+|.-|..+|..|++.|++|+++++++.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~   71 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPK   71 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            5799999999999999999999999999998653

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=96.93  E-value=0.00066  Score=48.92  Aligned_cols=32  Identities=22%  Similarity=0.196  Sum_probs=29.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC-----C-CeEEEEee
Q 038409            2 SCHAALIGAGTAGLGATRELSRE-----G-YLLVVFER   33 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~-----g-~~v~v~Er   33 (143)
                      +|+|+|||+|.-|...|..|.+.     | ++|+++.|
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            46899999999999999999998     9 99999988

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.91  E-value=0.0011  Score=47.50  Aligned_cols=33  Identities=27%  Similarity=0.360  Sum_probs=31.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +++|+|||+|-.|...+..|.+.|.+|+|++..
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            578999999999999999999999999999864

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=96.91  E-value=0.0011  Score=51.20  Aligned_cols=36  Identities=22%  Similarity=0.433  Sum_probs=33.3

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |.++|.|||.|.-|..+|..|.++|++|++++|++.
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~   44 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQS   44 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSH
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            568999999999999999999999999999998754

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=96.89  E-value=0.00096  Score=48.47  Aligned_cols=31  Identities=19%  Similarity=0.362  Sum_probs=29.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFER   33 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er   33 (143)
                      |+|+|||+|..|...|..|.+.|++|++++|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            4799999999999999999999999999998

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=96.87  E-value=0.00096  Score=50.67  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=31.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|+|||+|..|+..|..|++.|++|+++++.+.
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~   34 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSST   34 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4899999999999999999999999999998643

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.87  E-value=0.00091  Score=50.87  Aligned_cols=34  Identities=15%  Similarity=0.247  Sum_probs=30.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|+|||+|.-|+.+|..|++ |++|+++++.+.
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            3589999999999999999998 999999998654

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.87  E-value=0.0015  Score=45.39  Aligned_cols=34  Identities=18%  Similarity=0.282  Sum_probs=31.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|||||-.|...+..|.+.|.+|+|+....
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~   64 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV   64 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            5799999999999999999999999999998643

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=96.86  E-value=0.00099  Score=49.85  Aligned_cols=35  Identities=26%  Similarity=0.330  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +.+|+|||+|..|+.+|..|...|.+|+++++++.
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998754

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=96.86  E-value=0.0015  Score=50.63  Aligned_cols=34  Identities=12%  Similarity=0.185  Sum_probs=32.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++++|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~  248 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP  248 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence            7899999999999999999999999999999765

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=96.85  E-value=0.00086  Score=51.64  Aligned_cols=35  Identities=14%  Similarity=0.214  Sum_probs=31.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSRE--GYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~   36 (143)
                      +++|+|||+|.-|+..|..|++.  |++|+++++.+.
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~   45 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTA   45 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            46999999999999999999998  799999997543

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.85  E-value=0.0016  Score=47.61  Aligned_cols=35  Identities=20%  Similarity=0.337  Sum_probs=31.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      ++||+|||+|..|..+|..|+..|+ ++++++..+.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~   39 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   39 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHH
Confidence            3689999999999999999999998 9999997654

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=96.85  E-value=0.0015  Score=50.10  Aligned_cols=34  Identities=21%  Similarity=0.204  Sum_probs=31.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++++|||+|..|+.+|..|++.|.+|+++++..
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  218 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI  218 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc
Confidence            4689999999999999999999999999999864

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=96.85  E-value=0.0011  Score=48.17  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=30.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~   34 (143)
                      +++|.|||.|.-|...|..|.+.|+ +|++++|+
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            3689999999999999999999999 99999996

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.84  E-value=0.0015  Score=46.35  Aligned_cols=34  Identities=18%  Similarity=0.376  Sum_probs=31.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY--LLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~~   36 (143)
                      ++|.|||+|..|.+.|..|.+.|+  +|+++++++.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~   37 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE   37 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHH
Confidence            689999999999999999999998  9999998643

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=96.82  E-value=0.0011  Score=48.50  Aligned_cols=35  Identities=17%  Similarity=0.296  Sum_probs=32.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|.+|+.+|..|++.|.+|+++++.+.
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~  197 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHE  197 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCC
Confidence            47899999999999999999999999999998764

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.82  E-value=0.0021  Score=45.48  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=32.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|.|+|..|..++..|.+.|++|+++.|+..
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            46999999999999999999999999999998754

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.81  E-value=0.0016  Score=47.21  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=30.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      +||+|||+|..|...|..|...|+  +++++++.+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            589999999999999999999999  999999764

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=96.80  E-value=0.0013  Score=51.17  Aligned_cols=35  Identities=23%  Similarity=0.529  Sum_probs=32.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|||+|.+|+.+|..|++.+.+|++++|.+.
T Consensus       186 gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~  220 (542)
T 1w4x_A          186 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH  220 (542)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCc
Confidence            57999999999999999999999999999999764

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=96.80  E-value=0.0018  Score=44.00  Aligned_cols=34  Identities=32%  Similarity=0.429  Sum_probs=30.8

Q ss_pred             CcEEEEc-CCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIG-AGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIG-aG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|+||| +|..|...|..|.+.|++|++++|++.
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~   35 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4799999 999999999999999999999998643

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=96.80  E-value=0.0014  Score=50.57  Aligned_cols=34  Identities=24%  Similarity=0.448  Sum_probs=31.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||+|.-|..+|..|++.|++|+++++++.
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   39 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE   39 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            5899999999999999999999999999998654

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=96.79  E-value=0.0016  Score=50.37  Aligned_cols=33  Identities=21%  Similarity=0.259  Sum_probs=30.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      .++++|||+|..|+.+|..|++.|.+|+++++.
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            468999999999999999999999999999985

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=96.78  E-value=0.0014  Score=46.08  Aligned_cols=35  Identities=14%  Similarity=0.270  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC----CeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREG----YLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g----~~v~v~Er~~~   36 (143)
                      +++|.|||+|.-|...|..|.+.|    ++|++++|++.
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            368999999999999999999999    79999998765

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.78  E-value=0.0019  Score=46.23  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=32.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC---eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY---LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~---~v~v~Er~~~   36 (143)
                      .++|.|||+|.-|.+.|..|.+.|+   +|++++|++.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~   40 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLD   40 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHH
Confidence            4789999999999999999999999   9999998754

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.78  E-value=0.0006  Score=52.25  Aligned_cols=35  Identities=17%  Similarity=0.316  Sum_probs=32.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .|+|+|+|+|--|...|..|.+.|++|+++|+.+.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~   37 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGD   37 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            58999999999999999999999999999998654

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.78  E-value=0.0017  Score=49.65  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=31.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      -+++|||.|.-|+.+|..|++.|++|+++++.+.
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4799999999999999999999999999998766

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=96.77  E-value=0.0012  Score=47.00  Aligned_cols=33  Identities=27%  Similarity=0.440  Sum_probs=30.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|.|||+|..|...|..|.+ |++|++++|++.
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~   34 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFE   34 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTH
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence            689999999999999999999 999999998654

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.76  E-value=0.0019  Score=48.21  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|+|+|..|+.++..++..|.+|+++++++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            57899999999999999999999999999998754

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=96.76  E-value=0.0021  Score=47.25  Aligned_cols=35  Identities=26%  Similarity=0.300  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|.+.|..|++.|++|+++++.+.
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~   50 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGS   50 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTC
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChH
Confidence            47899999999999999999999999999998754

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.75  E-value=0.0018  Score=48.80  Aligned_cols=35  Identities=29%  Similarity=0.457  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|+|+|..|+.++..++..|.+|+++++++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            47899999999999999999999999999998754

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=96.75  E-value=0.0017  Score=46.96  Aligned_cols=34  Identities=24%  Similarity=0.421  Sum_probs=31.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|.|||+|..|...|..|.+.|++|++++|++.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            6899999999999999999999999999998654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.75  E-value=0.0019  Score=47.96  Aligned_cols=34  Identities=26%  Similarity=0.436  Sum_probs=31.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|.|||.|.-|...|..|.+.|++|++|+|.+.
T Consensus        23 mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~   56 (358)
T 4e21_A           23 MQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVN   56 (358)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            6899999999999999999999999999998654

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=96.74  E-value=0.0021  Score=46.68  Aligned_cols=34  Identities=26%  Similarity=0.458  Sum_probs=30.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~   36 (143)
                      |||+|||+|..|...|..|++.  |++|+++++.+.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~   36 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence            4899999999999999999985  789999998764

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=96.73  E-value=0.0009  Score=49.11  Aligned_cols=34  Identities=9%  Similarity=0.206  Sum_probs=31.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC-------CeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREG-------YLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g-------~~v~v~Er~~~   36 (143)
                      ++|+|||+|.-|.+.|..|.+.|       ++|++++|.+.
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            58999999999999999999998       89999998754

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.73  E-value=0.0019  Score=49.39  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=30.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHH--------------------HCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELS--------------------REGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~--------------------~~g~-~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|+                    +.|. +|+|++|++.
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            478999999999999999999                    5687 7999998753

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=96.72  E-value=0.0016  Score=47.16  Aligned_cols=34  Identities=21%  Similarity=0.345  Sum_probs=30.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREG--YLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~   36 (143)
                      ++|+|||+|..|...|..|.+.|  .+|+++++.+.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~   37 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEA   37 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHH
Confidence            68999999999999999999998  79999998643

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.72  E-value=0.0021  Score=45.60  Aligned_cols=34  Identities=24%  Similarity=0.441  Sum_probs=30.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|.|||+|..|.+.|..|.+.|++|+++++++.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~   34 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQS   34 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4799999999999999999999999999988643

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=96.71  E-value=0.0017  Score=45.61  Aligned_cols=34  Identities=18%  Similarity=0.415  Sum_probs=30.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREG-YLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~   36 (143)
                      |+|.|||+|..|...|..|.+.| ++|++++|++.
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~   35 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAE   35 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHH
Confidence            47999999999999999999999 99999998643

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=96.70  E-value=0.0017  Score=46.42  Aligned_cols=34  Identities=24%  Similarity=0.519  Sum_probs=31.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|.|||+|..|...|..|.+.|++|++++|++.
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~   34 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPD   34 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4799999999999999999999999999998654

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.70  E-value=0.0029  Score=43.07  Aligned_cols=36  Identities=19%  Similarity=0.253  Sum_probs=30.8

Q ss_pred             CCCcEEEEcC-CHHHHHHHHHHH-HCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGA-GTAGLGATRELS-REGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGa-G~~Gl~~A~~L~-~~g~~v~v~Er~~~   36 (143)
                      |+|+|+|.|| |..|..++..|. +.|++|+++.|++.
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~   41 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK   41 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCcc
Confidence            4455999995 999999999999 89999999988643

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.70  E-value=0.0023  Score=47.25  Aligned_cols=35  Identities=20%  Similarity=0.338  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|.|||.|..|-+.|..|++.|++|.+|++++.
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~   42 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRS   42 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998753

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=96.69  E-value=0.0022  Score=45.67  Aligned_cols=35  Identities=17%  Similarity=0.237  Sum_probs=32.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|.+.|.+|+++++.+.
T Consensus       147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~  181 (315)
T 3r9u_A          147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDE  181 (315)
T ss_dssp             TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred             cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCC
Confidence            46899999999999999999999999999998754

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=96.68  E-value=0.002  Score=45.94  Aligned_cols=35  Identities=23%  Similarity=0.282  Sum_probs=31.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|.+.|.+|+++++.+.
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~  188 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDT  188 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCC
Confidence            46899999999999999999999999999998654

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=96.67  E-value=0.0019  Score=46.99  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=31.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC----CeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREG----YLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g----~~v~v~Er~~   35 (143)
                      .|+|.|||+|.-|...|..|.+.|    ++|++++|++
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            358999999999999999999999    8999999875

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=96.66  E-value=0.0026  Score=48.65  Aligned_cols=33  Identities=30%  Similarity=0.412  Sum_probs=30.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +++++|||+|..|+.+|..|++.|.+|+++++.
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  219 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS  219 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            468999999999999999999999999999985

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.66  E-value=0.0027  Score=45.49  Aligned_cols=35  Identities=23%  Similarity=0.379  Sum_probs=31.5

Q ss_pred             CCCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            1 MSCHAALIGA-GTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         1 ~~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |+|+|+|.|| |..|..++..|.++|++|+++.|.+
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   36 (311)
T 3m2p_A            1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSI   36 (311)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            7899999995 9999999999999999999999873

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=96.66  E-value=0.0016  Score=48.93  Aligned_cols=33  Identities=21%  Similarity=0.218  Sum_probs=30.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|+|||+|..|+..|..|++ |++|+++++.+.
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~   33 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPS   33 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHH
Confidence            489999999999999999999 999999998643

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.65  E-value=0.0022  Score=45.91  Aligned_cols=35  Identities=20%  Similarity=0.299  Sum_probs=29.5

Q ss_pred             CCCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            1 MSCHAALIGA-GTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         1 ~~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |+|+|+|.|| |..|..++..|.+.|++|+++.|+.
T Consensus         1 m~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   36 (315)
T 2ydy_A            1 MNRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRR   36 (315)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC---
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCC
Confidence            7789999998 9999999999999999999998653

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.65  E-value=0.0021  Score=46.06  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=31.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|.|||+|..|...|..|.+.|++|++++|++.
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~   38 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEA   38 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            36899999999999999999999999999998643

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=96.65  E-value=0.0014  Score=46.85  Aligned_cols=34  Identities=26%  Similarity=0.299  Sum_probs=30.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||+|..|...|..|.+.|++|++++ ++.
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~   36 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGP   36 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHH
Confidence            4799999999999999999999999999998 544

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.65  E-value=0.0028  Score=43.60  Aligned_cols=35  Identities=23%  Similarity=0.266  Sum_probs=32.1

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|.|| |..|..++..|.++|++|+++.|++.
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   56 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE   56 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence            578999998 99999999999999999999998754

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=96.64  E-value=0.0027  Score=48.29  Aligned_cols=35  Identities=14%  Similarity=0.130  Sum_probs=32.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++++|||+|..|+.+|..|++.|.+|+++++.+.
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~  204 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKE  204 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            47899999999999999999999999999998765

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=96.63  E-value=0.0028  Score=45.34  Aligned_cols=35  Identities=20%  Similarity=0.256  Sum_probs=31.9

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|.|| |..|..++..|.+.|++|+++.|.+.
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            579999999 99999999999999999999988654

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.62  E-value=0.0033  Score=44.89  Aligned_cols=35  Identities=26%  Similarity=0.425  Sum_probs=32.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++++|+|+|-+|-+++.+|.+.|.+++|+.|...
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            47899999999999999999999999999998765

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.62  E-value=0.0023  Score=44.92  Aligned_cols=35  Identities=14%  Similarity=0.220  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||+|..|...|..|.+.|++|.+++|++.
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~   37 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLE   37 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHH
Confidence            47999999999999999999999999999998643

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.61  E-value=0.0035  Score=41.84  Aligned_cols=34  Identities=29%  Similarity=0.495  Sum_probs=31.0

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|+|.|| |..|..++..|.++|++|+++.|++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            78999998 99999999999999999999988643

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=96.60  E-value=0.0035  Score=44.65  Aligned_cols=36  Identities=22%  Similarity=0.275  Sum_probs=32.3

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      |||+|.|| |..|-..+..|.++|++|+++-|++..+
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~   37 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG   37 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC
Confidence            68999998 9999999999999999999998876543

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=96.59  E-value=0.0018  Score=45.72  Aligned_cols=33  Identities=15%  Similarity=0.128  Sum_probs=30.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|||+|.+|+.+|..|.+.| +|+++++.+
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~  173 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGI  173 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTT
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCC
Confidence            478999999999999999999999 999998754

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=96.57  E-value=0.0019  Score=46.72  Aligned_cols=35  Identities=34%  Similarity=0.550  Sum_probs=32.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++||.+||-|.-|..+|..|.+.|++|++|+|++.
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~   37 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS   37 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            57999999999999999999999999999998754

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=96.57  E-value=0.0023  Score=46.65  Aligned_cols=33  Identities=21%  Similarity=0.435  Sum_probs=30.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      |+|+|||+|..|.+.|..|.+.|+  +|+++++.+
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            589999999999999999999999  999999864

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=96.57  E-value=0.003  Score=48.77  Aligned_cols=35  Identities=23%  Similarity=0.470  Sum_probs=32.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||.|.-|..+|..|.+.|++|++|+|++.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~   38 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   38 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998764

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.56  E-value=0.0035  Score=44.57  Aligned_cols=34  Identities=26%  Similarity=0.274  Sum_probs=31.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|+|+|-.|.++|..|.+.|.+|+++.|+.
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4789999999999999999999999999998864

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.54  E-value=0.0027  Score=45.51  Aligned_cols=36  Identities=14%  Similarity=0.223  Sum_probs=32.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|..|+.+|..|++.+.+|+++++.+.+
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~  189 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKF  189 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSC
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcC
Confidence            468999999999999999999999999999987653

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.53  E-value=0.002  Score=49.38  Aligned_cols=34  Identities=18%  Similarity=0.183  Sum_probs=31.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~   36 (143)
                      ++|+|||+|..|+..|..|++.  |++|+++++.+.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~   41 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNES   41 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            6899999999999999999998  899999998643

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=96.53  E-value=0.0042  Score=45.05  Aligned_cols=34  Identities=32%  Similarity=0.453  Sum_probs=31.2

Q ss_pred             CCCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            1 MSCHAALIGA-GTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         1 ~~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      |+|+|+|.|| |..|..++..|.+.|++|+++.|.
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   35 (348)
T 1ek6_A            1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF   35 (348)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            7889999986 999999999999999999999764

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=96.53  E-value=0.0027  Score=51.35  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=31.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|.|||+|.-|..+|..|++.|++|+++++++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  346 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEK  346 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHH
Confidence            5899999999999999999999999999998643

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.53  E-value=0.0041  Score=44.80  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|.|||+|..|..+|..|+..|.+|++++|..
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5789999999999999999999999999999864

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.52  E-value=0.0042  Score=41.99  Aligned_cols=34  Identities=29%  Similarity=0.415  Sum_probs=30.7

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|+|.|| |..|..++..|.++|++|+++.|++.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~   35 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAG   35 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCch
Confidence            57999996 99999999999999999999998753

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=96.52  E-value=0.0027  Score=48.49  Aligned_cols=35  Identities=14%  Similarity=0.223  Sum_probs=31.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +.+|+|||.|.-||.+|.+|++.|++|+.||-.+.
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~   55 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPS   55 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            46899999999999999999999999999986543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.52  E-value=0.0037  Score=46.29  Aligned_cols=35  Identities=17%  Similarity=0.302  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|+|+|..|+.++..|+..|.+|+++++++.
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~  201 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE  201 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            36899999999999999999999999999998643

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.51  E-value=0.0041  Score=45.53  Aligned_cols=35  Identities=29%  Similarity=0.357  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      ++||+|||+|..|.++|..|...|+ ++++++..+.
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG   42 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            3589999999999999999999998 9999998654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.51  E-value=0.004  Score=46.23  Aligned_cols=34  Identities=18%  Similarity=0.353  Sum_probs=31.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|+|+|..|..+|..|+..|.+|+++++++
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4789999999999999999999999999999864

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=96.49  E-value=0.00073  Score=47.22  Aligned_cols=34  Identities=12%  Similarity=0.298  Sum_probs=30.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      .++|.|||+|..|.+.|..|++.|++|+.+.+..
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~~   39 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAPE   39 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSGG
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCHH
Confidence            4689999999999999999999999999998753

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.49  E-value=0.0043  Score=44.59  Aligned_cols=34  Identities=24%  Similarity=0.419  Sum_probs=31.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|.|||+|..|..+|..|+..|.+|+++++..
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            5789999999999999999999999999999864

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.48  E-value=0.0042  Score=46.30  Aligned_cols=34  Identities=32%  Similarity=0.439  Sum_probs=31.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|+|+|..|..+|..++..|.+|+++++++
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            5789999999999999999999999999999764

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=96.46  E-value=0.0026  Score=44.81  Aligned_cols=35  Identities=29%  Similarity=0.525  Sum_probs=31.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCe-EEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYL-LVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~-v~v~Er~~~   36 (143)
                      +++|.|||+|..|...|..|.+.|++ |.+++|++.
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~   45 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEE   45 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHH
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHH
Confidence            36899999999999999999999998 899988643

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.45  E-value=0.0042  Score=45.33  Aligned_cols=32  Identities=22%  Similarity=0.304  Sum_probs=30.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFERA   34 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~   34 (143)
                      ++|+|||+|..|..+|..|.+.|+ +++++++.
T Consensus         9 ~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            9 KKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            589999999999999999999999 99999987

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.45  E-value=0.0031  Score=50.85  Aligned_cols=34  Identities=6%  Similarity=0.091  Sum_probs=31.7

Q ss_pred             CCcEEEEc--CCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIG--AGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIG--aG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|||  +|..|+.+|..|++.|.+|+++++.+
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            46899999  99999999999999999999999976

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=95.45  E-value=0.00048  Score=47.01  Aligned_cols=36  Identities=19%  Similarity=0.251  Sum_probs=32.1

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +.++|.|||+|..|...|..|.+.|++|++++|.+.
T Consensus        18 ~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~   53 (201)
T 2yjz_A           18 KQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ   53 (201)
Confidence            357899999999999999999999999999988654

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.43  E-value=0.0042  Score=44.85  Aligned_cols=34  Identities=21%  Similarity=0.175  Sum_probs=31.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~   35 (143)
                      +++|+|+|+|-.|.++|..|.+.|. +|+++.|..
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            4789999999999999999999998 999998864

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.42  E-value=0.0032  Score=44.85  Aligned_cols=34  Identities=26%  Similarity=0.407  Sum_probs=31.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|||+|..|.++|..|.+.|.+|+++.|..
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4789999999999999999999999999999864

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=96.41  E-value=0.003  Score=44.35  Aligned_cols=31  Identities=19%  Similarity=0.224  Sum_probs=29.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFER   33 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er   33 (143)
                      |+|.|||+|..|...|..|.+.|++|+++++
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            4799999999999999999999999999876

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.41  E-value=0.0045  Score=44.45  Aligned_cols=36  Identities=22%  Similarity=0.309  Sum_probs=31.8

Q ss_pred             CCCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+++|+|.|| |..|..++..|.+.|++|+++-|.+.
T Consensus        10 m~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   46 (318)
T 2r6j_A           10 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS   46 (318)
T ss_dssp             CCCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence            3458999997 99999999999999999999998764

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.41  E-value=0.0035  Score=44.63  Aligned_cols=34  Identities=26%  Similarity=0.312  Sum_probs=31.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|+|+|-.|.++|..|.+.|.+|+++.|..
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4789999999999999999999999999999864

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.40  E-value=0.0054  Score=45.00  Aligned_cols=35  Identities=14%  Similarity=0.296  Sum_probs=32.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||.|..|...|..|+..|++|.++++...
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  184 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK  184 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            47899999999999999999999999999998764

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=96.38  E-value=0.0039  Score=47.96  Aligned_cols=34  Identities=24%  Similarity=0.482  Sum_probs=31.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|.|||+|.-|...|..|.+.|++|++++|.+.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~   36 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5899999999999999999999999999998654

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.37  E-value=0.005  Score=44.90  Aligned_cols=34  Identities=29%  Similarity=0.364  Sum_probs=30.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      ++||+|||+|..|...|..|...+.  ++.+++...
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3589999999999999999999987  899999754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.35  E-value=0.0057  Score=41.47  Aligned_cols=33  Identities=30%  Similarity=0.424  Sum_probs=30.3

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |+|+|.|| |..|..++..|.++|++|+++.|++
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            47999998 9999999999999999999998864

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.35  E-value=0.0038  Score=45.12  Aligned_cols=33  Identities=15%  Similarity=0.156  Sum_probs=30.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      |||+|||+|..|.++|..|.+.|+  +++++++.+
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            589999999999999999999888  899999764

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.34  E-value=0.0041  Score=47.00  Aligned_cols=35  Identities=23%  Similarity=0.298  Sum_probs=32.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|+|||.|-.|..+|..|.+.|++|+++|+.+.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            36899999999999999999999999999998755

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=96.33  E-value=0.0042  Score=47.80  Aligned_cols=34  Identities=21%  Similarity=0.512  Sum_probs=31.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|.|||+|..|...|..|.+.|++|++++|.+.
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~   35 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYS   35 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5899999999999999999999999999998643

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=96.30  E-value=0.0033  Score=50.75  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=31.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|.|||+|.-|..+|..|++.|++|+++++++.
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  348 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH  348 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCHH
Confidence            6899999999999999999999999999998643

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=96.29  E-value=0.0068  Score=44.62  Aligned_cols=35  Identities=26%  Similarity=0.218  Sum_probs=31.1

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|.|| |..|..++..|.+.|++|+++.|...
T Consensus        28 ~k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~   63 (381)
T 1n7h_A           28 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSS   63 (381)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCc
Confidence            468999998 99999999999999999999988643

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=96.29  E-value=0.0043  Score=47.75  Aligned_cols=34  Identities=18%  Similarity=0.470  Sum_probs=31.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|.|||+|.-|...|..|.+.|++|++++|++.
T Consensus        16 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~   49 (480)
T 2zyd_A           16 QQIGVVGMAVMGRNLALNIESRGYTVSIFNRSRE   49 (480)
T ss_dssp             BSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             CeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            6899999999999999999999999999998644

>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}

Probab=96.29  E-value=0.0043  Score=45.82  Aligned_cols=31  Identities=29%  Similarity=0.574  Sum_probs=25.6

Q ss_pred             CCCcEEEEcCCHHH-----HHHHHHHHHCCCeEEEE
Q 038409            1 MSCHAALIGAGTAG-----LGATRELSREGYLLVVF   31 (143)
Q Consensus         1 ~~~~v~IIGaG~~G-----l~~A~~L~~~g~~v~v~   31 (143)
                      |.++|+|.|||.+|     ++.|..|+++|++|+.+
T Consensus         1 M~~~i~i~~GGTgGHi~palala~~L~~~g~~V~~v   36 (365)
T 3s2u_A            1 MKGNVLIMAGGTGGHVFPALACAREFQARGYAVHWL   36 (365)
T ss_dssp             --CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCcEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            78999999999998     46788888999999876

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.28  E-value=0.005  Score=51.53  Aligned_cols=34  Identities=18%  Similarity=0.242  Sum_probs=31.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~   35 (143)
                      +++|+|||||..|+-+|..|.+.|. +|++++|++
T Consensus       332 ~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            3589999999999999999999997 899999875

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=96.27  E-value=0.0042  Score=44.29  Aligned_cols=36  Identities=25%  Similarity=0.265  Sum_probs=32.3

Q ss_pred             CCCcEEEEcC-CHHHHHHHHHHHHC--CCeEEEEeeCCC
Q 038409            1 MSCHAALIGA-GTAGLGATRELSRE--GYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGa-G~~Gl~~A~~L~~~--g~~v~v~Er~~~   36 (143)
                      |+|+|+|.|| |..|..++..|.+.  |++|+++.|++.
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~   39 (312)
T 2yy7_A            1 MNPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKL   39 (312)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCC
T ss_pred             CCceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCc
Confidence            7889999998 99999999999998  899999988643

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.25  E-value=0.0067  Score=44.32  Aligned_cols=35  Identities=26%  Similarity=0.320  Sum_probs=31.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      ++||+|||+|..|.++|..|.+.++ ++.+++..+.
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~   40 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQG   40 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChH
Confidence            3699999999999999999999888 9999998654

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.24  E-value=0.0064  Score=44.52  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=31.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||.|..|...|..|+..|++|.+++++..
T Consensus       155 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  189 (330)
T 2gcg_A          155 QSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQP  189 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            57899999999999999999999999999998653

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.23  E-value=0.0042  Score=42.33  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=31.4

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|.|| |..|..++..|.+.|++|+++.|++.
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE   39 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGG
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcc
Confidence            468999996 99999999999999999999998744

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.22  E-value=0.0059  Score=43.84  Aligned_cols=35  Identities=14%  Similarity=0.071  Sum_probs=31.5

Q ss_pred             CCCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            1 MSCHAALIGA-GTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         1 ~~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |+|+|+|.|| |..|..++..|.+.|++|+++.|.+
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL   38 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence            4678999997 9999999999999999999999875

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=96.22  E-value=0.0078  Score=44.79  Aligned_cols=34  Identities=24%  Similarity=0.378  Sum_probs=31.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|+|+|..|..++.++++.|+++.+++..+
T Consensus        14 ~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~   47 (389)
T 3q2o_A           14 GKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK   47 (389)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            4689999999999999999999999999998654

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=96.21  E-value=0.0017  Score=49.11  Aligned_cols=35  Identities=14%  Similarity=0.209  Sum_probs=24.7

Q ss_pred             CcEEEEcCCHHH----------HHHHHHHHHCCCe-----EEEEeeCCCC
Q 038409            3 CHAALIGAGTAG----------LGATRELSREGYL-----LVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~G----------l~~A~~L~~~g~~-----v~v~Er~~~~   37 (143)
                      ++++|||+|.++          +.+|..|++.|.+     |+++++.+.+
T Consensus       150 ~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~  199 (437)
T 3sx6_A          150 PGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYI  199 (437)
T ss_dssp             CCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSST
T ss_pred             CCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccc
Confidence            467899997653          3444677787875     9999986543

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.21  E-value=0.0048  Score=47.55  Aligned_cols=34  Identities=26%  Similarity=0.354  Sum_probs=31.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|+|+|+|+|..|..+|..|+..|.+|.++++.+
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            5789999999999999999999999999999764

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.20  E-value=0.003  Score=52.51  Aligned_cols=36  Identities=17%  Similarity=0.296  Sum_probs=32.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      +++|+|||+|..|+.+|..|++.|.+|+|+|+++.+
T Consensus       284 gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~  319 (965)
T 2gag_A          284 GARIAVATTNDSAYELVRELAATGGVVAVIDARSSI  319 (965)
T ss_dssp             CSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSC
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCcc
Confidence            378999999999999999999999999999987653

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.20  E-value=0.005  Score=46.74  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|+|.|..|..+|..|+..|.+|.++|+.+
T Consensus       220 GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          220 GKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            5789999999999999999999999999999764

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.20  E-value=0.0061  Score=46.80  Aligned_cols=34  Identities=15%  Similarity=0.448  Sum_probs=31.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|.|||+|.-|...|..|.+.|++|++++|.+.
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~   39 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTS   39 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence            5899999999999999999999999999998643

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.20  E-value=0.0059  Score=46.60  Aligned_cols=35  Identities=29%  Similarity=0.450  Sum_probs=30.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC--------------------CC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSRE--------------------GY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~--------------------g~-~v~v~Er~~~   36 (143)
                      +++|+|||+|..|+.+|..|++.                    |. +|++++|+..
T Consensus       147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~  202 (456)
T 1lqt_A          147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP  202 (456)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence            47899999999999999999874                    54 8999998754

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=96.19  E-value=0.0057  Score=43.56  Aligned_cols=35  Identities=20%  Similarity=0.354  Sum_probs=30.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSRE--GYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~   36 (143)
                      +++|.|||+|..|...|..|.+.  +++|.++++++.
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~   42 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDR   42 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHH
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHH
Confidence            46899999999999999999987  679999987643

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.18  E-value=0.0038  Score=44.73  Aligned_cols=35  Identities=29%  Similarity=0.324  Sum_probs=31.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      +++++|+|+|-+|.++|..|.+.|. +++++.|...
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~  152 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMS  152 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            4789999999999999999999998 8999988643

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.18  E-value=0.0064  Score=46.49  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=31.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +++|+|||+|..|...+..|.+.|.+|+|++..
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            578999999999999999999999999999864

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=96.17  E-value=0.0074  Score=44.33  Aligned_cols=35  Identities=23%  Similarity=0.352  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||.|..|...|..|+..|.+|.++++.+.
T Consensus       164 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~  198 (333)
T 3ba1_A          164 GKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKK  198 (333)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCch
Confidence            57899999999999999999999999999998765

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.16  E-value=0.0048  Score=42.56  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=31.3

Q ss_pred             CCCcEEEEcC-CHHHHHHHHHHHHCC-CeEEEEeeCCC
Q 038409            1 MSCHAALIGA-GTAGLGATRELSREG-YLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGa-G~~Gl~~A~~L~~~g-~~v~v~Er~~~   36 (143)
                      |+|+|+|.|| |..|..++..|.+.| ++|+++.|++.
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~   59 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPA   59 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGG
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChh
Confidence            4578999995 999999999999999 89999988654

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.16  E-value=0.0074  Score=44.28  Aligned_cols=35  Identities=23%  Similarity=0.368  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||.|..|...|..|+..|++|.++++...
T Consensus       146 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~  180 (333)
T 2d0i_A          146 GKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRK  180 (333)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            57899999999999999999999999999998765

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.15  E-value=0.009  Score=43.88  Aligned_cols=35  Identities=26%  Similarity=0.260  Sum_probs=30.6

Q ss_pred             CCCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            1 MSCHAALIGA-GTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         1 ~~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |+|+|+|.|| |..|..++..|.+.|++|+++.|.+
T Consensus        23 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   58 (375)
T 1t2a_A           23 MRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   58 (375)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             cCcEEEEECCCchHHHHHHHHHHHCCCEEEEEECCc
Confidence            4478999996 9999999999999999999998864

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.15  E-value=0.0092  Score=44.31  Aligned_cols=35  Identities=23%  Similarity=0.468  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|+|+|..|..++.++++.|+++.+++..+.
T Consensus        12 ~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           12 GATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            46899999999999999999999999999987543

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.14  E-value=0.0063  Score=44.36  Aligned_cols=34  Identities=24%  Similarity=0.434  Sum_probs=30.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY--LLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~~   36 (143)
                      |||+|||+|..|.++|..|.+.+.  ++.++|..+.
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~   36 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDG   36 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchH
Confidence            589999999999999999998887  8999998664

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.14  E-value=0.0063  Score=44.28  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=29.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      .+||+|||+|..|.+.|..|...+.  ++.+++..+
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            4689999999999999999988775  899999764

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.13  E-value=0.0097  Score=43.20  Aligned_cols=35  Identities=11%  Similarity=0.141  Sum_probs=31.5

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|.|| |..|..++..|.++|++|+++.|.+.
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            579999996 99999999999999999999998643

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.13  E-value=0.0066  Score=45.46  Aligned_cols=33  Identities=24%  Similarity=0.346  Sum_probs=30.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~   34 (143)
                      ..+|+|+|||.+|..+|..|...|. ++++++|.
T Consensus       192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            3589999999999999999999998 89999986

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=96.13  E-value=0.0057  Score=45.91  Aligned_cols=32  Identities=31%  Similarity=0.483  Sum_probs=30.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFERA   34 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~   34 (143)
                      .+|+|+|||.+|+.+|..|...|. +++++++.
T Consensus       189 ~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          189 VSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            489999999999999999999999 99999986

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.11  E-value=0.0061  Score=44.67  Aligned_cols=34  Identities=38%  Similarity=0.438  Sum_probs=30.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      .+||+|||+|..|.++|..|.+.|+  ++++++...
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            4689999999999999999999887  899999753

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=96.11  E-value=0.0064  Score=44.06  Aligned_cols=34  Identities=24%  Similarity=0.480  Sum_probs=29.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      ++||+|||||..|...|..|...|+  ++.++|..+
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            3689999999999999999998888  999999865

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=96.11  E-value=0.011  Score=41.24  Aligned_cols=36  Identities=14%  Similarity=0.289  Sum_probs=30.8

Q ss_pred             CCCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|+|+|.|| |-.|..+|..|.++|++|.++.|+..
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~   57 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFREN   57 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            6788999987 66899999999999999999998765

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.08  E-value=0.0068  Score=42.61  Aligned_cols=33  Identities=21%  Similarity=0.385  Sum_probs=30.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~   35 (143)
                      ++|+|||+|-.|..+|..|.+.|+ +++++++..
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            689999999999999999999998 899999754

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=96.05  E-value=0.0018  Score=45.41  Aligned_cols=36  Identities=17%  Similarity=0.096  Sum_probs=32.4

Q ss_pred             CCCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|+|+|.|| |..|..++..|.+.|++|+++.|.+.
T Consensus         1 M~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (267)
T 3ay3_A            1 MLNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDL   37 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCC
T ss_pred             CCceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCc
Confidence            6789999998 99999999999999999999988653

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=96.04  E-value=0.0065  Score=46.97  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=31.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|||+|..|..+|..|+..|.+|.++++.+
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5789999999999999999999999999999754

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=96.01  E-value=0.0056  Score=49.60  Aligned_cols=34  Identities=26%  Similarity=0.432  Sum_probs=31.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||||.-|-..|..+++.|++|+++|..+.
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~  350 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPK  350 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchHh
Confidence            5899999999999999999999999999997654

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.99  E-value=0.01  Score=42.96  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=30.7

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|.|| |..|..++..|.+.|++|.++.|.+.
T Consensus        19 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   54 (347)
T 4id9_A           19 SHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS   54 (347)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            478999998 99999999999999999999998754

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=95.98  E-value=0.012  Score=42.95  Aligned_cols=33  Identities=21%  Similarity=0.351  Sum_probs=30.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~   34 (143)
                      +++++|+|+|-+|-++|.+|.+.|. +|+|+.|.
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            5789999999999999999999998 89999987

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=95.98  E-value=0.012  Score=40.50  Aligned_cols=35  Identities=20%  Similarity=0.330  Sum_probs=30.4

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ||+|+|.|| |..|..+|..|.++|++|.++.|++.
T Consensus         1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~   36 (255)
T 2dkn_A            1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQA   36 (255)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            368999987 89999999999999999999988653

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=95.96  E-value=0.012  Score=43.48  Aligned_cols=34  Identities=24%  Similarity=0.423  Sum_probs=30.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      ||+|+|+|+|..|...+.+|++.|+++.+++..+
T Consensus         1 M~~Ililg~g~~g~~~~~a~~~~G~~v~~~~~~~   34 (380)
T 3ax6_A            1 MKKIGIIGGGQLGKMMTLEAKKMGFYVIVLDPTP   34 (380)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            3789999999999999999999999999998643

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.95  E-value=0.013  Score=43.22  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=31.5

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|.|| |..|..++..|.+.|++|+++.|.+.
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   64 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   64 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            578999998 99999999999999999999988654

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.94  E-value=0.003  Score=43.67  Aligned_cols=34  Identities=26%  Similarity=0.283  Sum_probs=30.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|+|+|+|..|...|..|.+.|+ |+++|+.+.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            3689999999999999999999999 999998765

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=95.94  E-value=0.011  Score=42.32  Aligned_cols=34  Identities=29%  Similarity=0.329  Sum_probs=30.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~   35 (143)
                      +++++|+|+|-+|.+++.+|.+.|. +|+++.|..
T Consensus       126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            4789999999999999999999996 999998864

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=95.94  E-value=0.0088  Score=43.83  Aligned_cols=34  Identities=18%  Similarity=0.274  Sum_probs=30.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      ++||+|||+|..|.++|..|...+.  ++.+++...
T Consensus         9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   44 (326)
T 3vku_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK   44 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            4699999999999999999998887  899999743

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=95.94  E-value=0.0099  Score=42.67  Aligned_cols=34  Identities=18%  Similarity=0.162  Sum_probs=31.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~   35 (143)
                      +++++|+|+|-+|-+++.+|.+.|. +++|+.|..
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            5789999999999999999999998 899998864

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=95.94  E-value=0.013  Score=42.60  Aligned_cols=35  Identities=11%  Similarity=0.156  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||.|..|...|..|+..|.+|.+|++.+.
T Consensus       142 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~  176 (313)
T 2ekl_A          142 GKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDI  176 (313)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            57899999999999999999999999999998754

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=95.93  E-value=0.011  Score=42.09  Aligned_cols=34  Identities=32%  Similarity=0.350  Sum_probs=30.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~   35 (143)
                      +++++|+|+|-+|.+++.+|.+.|. +++++.|..
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            4789999999999999999999996 999998864

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=95.92  E-value=0.013  Score=42.53  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||.|..|...|..|+..|.+|.++++...
T Consensus       144 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~  178 (311)
T 2cuk_A          144 GLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPK  178 (311)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            57899999999999999999999999999998654

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=95.90  E-value=0.0084  Score=45.58  Aligned_cols=34  Identities=29%  Similarity=0.313  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|||.|..|..+|..|+..|.+|.++|+.+
T Consensus       211 GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p  244 (436)
T 3h9u_A          211 GKTACVCGYGDVGKGCAAALRGFGARVVVTEVDP  244 (436)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            5789999999999999999999999999999854

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=95.90  E-value=0.0073  Score=44.13  Aligned_cols=34  Identities=18%  Similarity=0.307  Sum_probs=29.7

Q ss_pred             CCcEEEEc-CCHHHHHHHHHHHHCC--CeEEEEeeCC
Q 038409            2 SCHAALIG-AGTAGLGATRELSREG--YLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIG-aG~~Gl~~A~~L~~~g--~~v~v~Er~~   35 (143)
                      ++||+|+| +|..|...+..|.+.|  .++++++..+
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~   44 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVN   44 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            46899999 7999999999999988  6899998654

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=95.89  E-value=0.0088  Score=42.79  Aligned_cols=33  Identities=21%  Similarity=0.367  Sum_probs=29.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++++|+|+|-.|.++|..|.+.| +|+++.|+.
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            478999999999999999999999 999998763

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.89  E-value=0.0087  Score=42.57  Aligned_cols=35  Identities=14%  Similarity=0.191  Sum_probs=31.7

Q ss_pred             CCCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            1 MSCHAALIGA-GTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         1 ~~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      ++++|+|.|| |..|..++..|.+.|++|+++.|.+
T Consensus         1 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            1 TENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CCcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            3678999998 9999999999999999999999875

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=95.88  E-value=0.011  Score=43.20  Aligned_cols=35  Identities=9%  Similarity=0.230  Sum_probs=31.2

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHC-CCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSRE-GYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~-g~~v~v~Er~~~   36 (143)
                      +|+|+|.|| |..|..++..|.+. |++|+++.|.+.
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   60 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTD   60 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCT
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChh
Confidence            578999995 99999999999998 999999998654

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.88  E-value=0.013  Score=43.08  Aligned_cols=34  Identities=12%  Similarity=0.306  Sum_probs=30.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      .+||+|||+|..|.++|..|...|.  ++.++|...
T Consensus        19 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~   54 (331)
T 4aj2_A           19 QNKITVVGVGAVGMACAISILMKDLADELALVDVIE   54 (331)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCCh
Confidence            4689999999999999999999887  899998653

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.85  E-value=0.013  Score=40.18  Aligned_cols=36  Identities=28%  Similarity=0.408  Sum_probs=31.0

Q ss_pred             CCCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|+|+|.|| |-.|..+|..|.++|++|.++.|++.
T Consensus         1 ~~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~   37 (242)
T 1uay_A            1 MERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   37 (242)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc
Confidence            5788999987 67899999999999999999998765

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=95.85  E-value=0.013  Score=42.06  Aligned_cols=35  Identities=23%  Similarity=0.237  Sum_probs=30.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      +++++|+|+|-+|.+++.+|.+.|. +++|+.|...
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~  162 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTS  162 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHH
Confidence            4789999999999999999999998 7999988643

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=95.84  E-value=0.0096  Score=44.77  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=31.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~   35 (143)
                      +++|+|||+|..|..++..|+..|. +|+++.|..
T Consensus       167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            5789999999999999999999998 899998864

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=95.84  E-value=0.013  Score=41.69  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=30.6

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|+|.|| |..|..++..|.++|++|+++.|.+.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   35 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSS   35 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            58999998 99999999999999999999987543

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=95.84  E-value=0.01  Score=43.21  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=29.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      +||+|||+|..|.++|..|...+.  ++.+++..+
T Consensus         7 ~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~   41 (317)
T 3d0o_A            7 NKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT   41 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            589999999999999999998875  899998643

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.83  E-value=0.017  Score=41.67  Aligned_cols=34  Identities=32%  Similarity=0.472  Sum_probs=30.8

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|+|.|| |..|..++..|.+.|++|+++.|.+.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   48 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSS   48 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChH
Confidence            58999996 99999999999999999999998654

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.82  E-value=0.011  Score=43.42  Aligned_cols=34  Identities=6%  Similarity=0.188  Sum_probs=30.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      .+||+|||+|..|..+|..|...|+  ++.++|...
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            3689999999999999999999887  899999754

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.80  E-value=0.016  Score=41.73  Aligned_cols=36  Identities=22%  Similarity=0.305  Sum_probs=30.9

Q ss_pred             CCCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++++|+|.|| |..|..++..|.+.|++|+++.|.+.
T Consensus        13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~   49 (335)
T 1rpn_A           13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   49 (335)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            3689999987 99999999999999999999988653

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=95.80  E-value=0.016  Score=42.23  Aligned_cols=33  Identities=27%  Similarity=0.391  Sum_probs=30.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~   34 (143)
                      +++++|+|+|-+|-+++.+|.+.|. +++|+.|.
T Consensus       148 gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt  181 (312)
T 3t4e_A          148 GKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK  181 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            4789999999999999999999998 89999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	4e-04
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	5e-04
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	0.001
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	0.001
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	0.001
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	0.002
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	0.002
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	0.002
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	0.003
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	0.004

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 36.9 bits (84), Expect = 4e-04
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 6  ALIGAGTAGLGATRELSREG--YLLVVFERAKGL 37
          A+IGAG +GL   + L  E     + +FER    
Sbjct: 8  AIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSP 41

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 36.3 bits (83), Expect = 5e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 5  AALIGAGTAGLGATRELSREGYLLVVFERAKGL 37
            ++GAG +GL A   L   G  + V E A  +
Sbjct: 10 VLVVGAGFSGLYALYRLRELGRSVHVIETAGDV 42

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 35.5 bits (80), Expect = 0.001
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 4  HAALIGAGTAGLGATRELSREGYLLVVFERA 34
          H  ++GAG AGL A   L+  G+ + V E +
Sbjct: 32 HVVIVGAGMAGLSAAYVLAGAGHQVTVLEAS 62

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 35.6 bits (80), Expect = 0.001
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 6  ALIGAGTAGLGATRELSREGYLLVVFERAK---GLTQTH 41
          A+IGAG +GL A  +L   G  + VFE      G  ++ 
Sbjct: 5  AVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSV 43

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 35.1 bits (79), Expect = 0.001
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 6  ALIGAGTAGLGATRELSREGYLLVVFERA 34
          A++G G +GL     L   G   V+ E +
Sbjct: 4  AVVGGGISGLAVAHHLRSRGTDAVLLESS 32

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.002
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 6  ALIGAGTAGLGATRELSREGYLLVVFERA 34
           +IG+G +GL A R+L   G  + + E  
Sbjct: 9  IIIGSGVSGLAAARQLQSFGMDVTLLEAR 37

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 34.6 bits (78), Expect = 0.002
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 1  MSCHAALIGAGTAGLGATRELSREGYLLVVFERAK 35
          M     +IG G +GL A    + EG  +++ ++  
Sbjct: 1  MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN 35

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (78), Expect = 0.002
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 5  AALIGAGTAGLGATRELSREGYLLVVFERA 34
            ++G G +G+ A + L   G  +VV E  
Sbjct: 2  VVVVGGGISGMAAAKLLHDSGLNVVVLEAR 31

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 34.0 bits (77), Expect = 0.003
 Identities = 8/39 (20%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 6  ALIGAGTAGLGATRELSREGYLLVVFERAK---GLTQTH 41
           ++GAG +G    R+L+ +G+ + + ++     G +   
Sbjct: 6  LIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDA 44

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 34.0 bits (77), Expect = 0.004
 Identities = 7/32 (21%), Positives = 15/32 (46%)

Query: 6  ALIGAGTAGLGATRELSREGYLLVVFERAKGL 37
           ++G+G  G     EL +    ++V E+   +
Sbjct: 5  IIVGSGLFGAVCANELKKLNKKVLVIEKRNHI 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.73
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.59
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.57
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.36
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.36
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.31
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.3
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.28
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.27
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.26
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	99.24
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.24
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.22
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.21
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.21
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.2
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.19
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.15
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.15
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.14
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	99.1
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.1
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.07
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	99.06
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.03
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.02
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.01
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.97
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.92
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.91
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.91
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.86
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.86
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.85
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.85
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.84
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.82
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.81
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.8
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.78
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.74
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.73
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.7
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.69
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.69
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.67
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.66
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.66
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.66
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.66
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.61
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.61
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.61
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.6
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.6
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.57
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.57
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.57
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.57
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.54
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.54
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.49
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.49
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.48
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.48
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.48
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.47
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.46
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.45
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.44
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.43
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.42
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.36
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.35
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.34
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.34
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.33
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.33
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.3
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.3
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.28
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.26
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.23
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.21
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.2
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.17
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.16
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.13
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.11
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.08
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.03
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.9
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.86
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.86
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.79
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.78
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.77
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.74
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.73
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.72
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.65
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.65
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.63
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.59
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.56
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.53
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.5
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.48
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.43
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.42
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.38
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.32
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.26
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.24
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.21
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.11
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.1
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.04
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.01
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.99
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	96.97
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.96
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.87
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.86
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.84
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.84
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.81
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.78
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.74
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	96.72
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.69
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.68
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.68
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.67
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.62
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.61
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.59
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.59
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.55
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	96.55
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.55
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.51
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.46
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.45
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.42
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.38
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.38
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.36
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	96.33
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.27
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.21
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.2
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.2
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.18
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.17
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.17
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.16
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.11
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.07
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	95.99
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	95.97
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	95.97
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.9
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	95.88
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.83
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	95.78
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.75
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.72
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	95.7
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.57
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	95.52
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.52
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.51
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	95.49
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.41
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	95.37
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	95.32
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	95.29
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.26
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	95.25
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.23
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.2
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	95.07
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	95.05
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	95.01
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.89
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	94.83
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	94.77
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	94.67
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.63
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	94.63
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	94.6
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.58
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	94.56
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	94.55
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	94.53
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.52
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	94.45
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	94.43
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	94.35
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	94.21
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	94.2
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	94.19
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	94.18
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	94.16
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	94.14
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.11
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	94.11
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	94.06
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	94.0
d1f0ka_	351	Peptidoglycan biosynthesis glycosyltransferase Mur	93.94
d1iowa1	96	D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge	93.88
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.86
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	93.78
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.72
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	93.67
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	93.63
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	93.61
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	93.58
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	93.42
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	93.39
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.27
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	93.25
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	93.23
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.18
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	93.17
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	93.17
d1pn3a_	391	TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi	93.17
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	93.09
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	93.09
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	93.06
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	93.06
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.05
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	93.03
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	93.02
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	93.0
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	92.99
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	92.97
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	92.94
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	92.92
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	92.91
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	92.88
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.84
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.77
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	92.7
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	92.67
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	92.67
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	92.64
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	92.64
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	92.64
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	92.63
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	92.59
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	92.58
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	92.58
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.51
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	92.5
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	92.49
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	92.47
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.4
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	92.37
d1iira_	401	UDP-glucosyltransferase GtfB {Amycolatopsis orient	92.37
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	92.34
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	92.3
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	92.28
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.26
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	92.25
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	92.1
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.1
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	92.1
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	91.96
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	91.89
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	91.84
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	91.77
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	91.75
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	91.69
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	91.68
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	91.65
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	91.64
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	91.64
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	91.47
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	91.33
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	91.31
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	91.25
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	91.15
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	91.13
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	91.1
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	90.94
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	90.88
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	90.87
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	90.68
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	90.6
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	90.51
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	90.51
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.51
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	90.46
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	90.42
d1rrva_	401	TDP-vancosaminyltransferase GftD {Amycolatopsis or	90.39
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	90.24
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	90.08
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.99
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	89.62
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	89.46
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	89.45
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	89.43
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	89.41
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	89.03
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	88.93
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	88.77
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	88.53
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	88.53
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	88.42
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	88.29
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	88.22
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	88.19
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	88.1
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	87.68
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	87.55
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	87.04
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	87.02
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	87.02
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	87.01
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	86.98
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	86.93
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	86.76
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	86.71
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	86.39
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	86.05
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	86.0
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	85.91
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	85.63
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	85.37
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	85.3
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	85.13
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	85.04
d2bisa1	437	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	84.51
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	83.96
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	83.75
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	82.82
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	82.76
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	82.48
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	81.71
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	81.67
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	81.47
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	81.41
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	80.84
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	80.79
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	80.53
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	80.52

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.73  E-value=1.5e-18  Score=126.15  Aligned_cols=132  Identities=17%  Similarity=0.168  Sum_probs=82.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCCCceeeeecCCCcc--Cc--c---------CC---ccccccccc
Q 038409            2 SCHAALIGAGTAGLGATRELSREG--YLLVVFERAKGLTQTHLAMPQVEL--QP--G---------LV---LTALSGQIY   63 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~~Gg~~~~~~~~~~--~~--~---------g~---~~~~~~~~~   63 (143)
                      +|+|+|||||++||++|..|+++|  ++|+||||++.+||+|.+......  +.  .         ..   .....+.+|
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y   83 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   83 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence            479999999999999999998876  599999999999999987643321  00  0         00   001112222


Q ss_pred             -------cceeeeeeccccCCCCCCCCCCCcCCCCceeeceEEEEEEeeeccCCCCeEEcCceEEEeecc---eEEEccC
Q 038409           64 -------IGEIMNFREYPFLARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHENG---SVVIRIQ  133 (143)
Q Consensus        64 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~---~v~~~dG  133 (143)
                             +...+.+++++++..      ...|+.+.+...    ++..........|+++++|++++.+.   .|++.|+
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~------~~~f~~~~~~~~----yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~  153 (335)
T d2gv8a1          84 RDLQTNTPIELMGYCDQSFKPQ------TLQFPHRHTIQE----YQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGT  153 (335)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCTT------CCSSCBHHHHHH----HHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEES
T ss_pred             hhhhcCCcHhhhhhhhhcCCcc------cccCCchHHHHH----HHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEec
Confidence                   344555666655544      556665443221    11111112335789999999997543   4777764


Q ss_pred             c------EEEeeeEeC
Q 038409          134 R------VIFTDIIQH  143 (143)
Q Consensus       134 ~------~~~aD~vI~  143 (143)
                      .      +..+|.||+
T Consensus       154 ~~~~~~~~~~~d~VI~  169 (335)
T d2gv8a1         154 KAGSPISKDIFDAVSI  169 (335)
T ss_dssp             STTCCEEEEEESEEEE
T ss_pred             CCCCeEEEEEeeEEEE
Confidence            3      356899883

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.59  E-value=3e-16  Score=109.50  Aligned_cols=133  Identities=14%  Similarity=0.112  Sum_probs=71.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC----ceeeeecCCCc--cCccCCccccccccccceeeeeecccc
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL----TQTHLAMPQVE--LQPGLVLTALSGQIYIGEIMNFREYPF   75 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~----Gg~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~   75 (143)
                      .+||+|||||++|+++|+.|+++|++|+||||++..    |+.+.+.++..  +..+|+......  .+...+.+.+++.
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~   81 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSIS--VPSSSMEYVDALT   81 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTC--BCCCEEEEEETTT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhc--cCCCcceeEeccC
Confidence            479999999999999999999999999999998663    33332222221  233444311110  1111112222211


Q ss_pred             CCCCCCCCCCCcCCCCceeeceEEEEEEeeeccCCCCeEEcCceEEEeecc---eEEEccCcEEEeeeEe
Q 038409           76 LARNDGTADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHENG---SVVIRIQRVIFTDIIQ  142 (143)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~---~v~~~dG~~~~aD~vI  142 (143)
                      ...      ...+............+...........++++.+++++.+++   .++|+||+++++|++|
T Consensus        82 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v  145 (265)
T d2voua1          82 GER------VGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVI  145 (265)
T ss_dssp             CCE------EEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEE
T ss_pred             Cce------ecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEe
Confidence            100      000000000000000000000003345788888899987643   6889999999999987

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.57  E-value=2.6e-16  Score=112.95  Aligned_cols=123  Identities=16%  Similarity=0.084  Sum_probs=75.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeecCCCccCccCCccccccccc--cceeeeeeccccCCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVLTALSGQIY--IGEIMNFREYPFLARND   80 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~   80 (143)
                      .+|+|||||++||++|..|++.|++++|||+++.+||+|.+....+     +.-......+  +...+.+.+++      
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg-----~~~d~~~~~~~~s~~~~~~~~~~------   76 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPG-----ARCDIESIEYCYSFSEEVLQEWN------   76 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTT-----CBCSSCTTTSSCCSCHHHHHHCC------
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCC-----ceeccccccccccccccccCCCC------
Confidence            4799999999999999999999999999999999999997543221     1100001111  11111111111      


Q ss_pred             CCCCCCcCCCCceeeceEEEEEEeeec--cCCCCeEEcCceEEEe--ec-c--eEEEccCcEEEeeeEeC
Q 038409           81 GTADPRRFRGHWETAGVAKVYIASKLV--AGYNNMLLYSMIESIH--EN-G--SVVIRIQRVIFTDIIQH  143 (143)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~v~~~~--~~-~--~v~~~dG~~~~aD~vI~  143 (143)
                         ....||.+.+...    ++.+...  ....+|+++++|+++.  ++ +  .|.+.++.++++|.||.
T Consensus        77 ---~~~~~p~~~e~~~----Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~  139 (298)
T d1w4xa1          77 ---WTERYASQPEILR----YINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIM  139 (298)
T ss_dssp             ---CCBSSCBHHHHHH----HHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEE
T ss_pred             ---CccccCccchHHH----HHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEE
Confidence               1233443332211    1111111  2234789999999986  22 2  69999999999999983

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.36  E-value=5.7e-13  Score=92.93  Aligned_cols=37  Identities=22%  Similarity=0.417  Sum_probs=33.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCCCc
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKGLT   38 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~~G   38 (143)
                      +++|+|||||++||++|+.|++.|+ +|+||||++.++
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~   38 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR   38 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCC
Confidence            4699999999999999999999996 999999988753

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.36  E-value=2.6e-13  Score=94.92  Aligned_cols=40  Identities=33%  Similarity=0.426  Sum_probs=37.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      +|||+|||||++||+||+.|+++|++|+|||+++.+||.+
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~   40 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKL   40 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCce
Confidence            5899999999999999999999999999999999999854

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=7.6e-13  Score=88.05  Aligned_cols=43  Identities=21%  Similarity=0.315  Sum_probs=40.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      +|+|+|||||++||++|..|+++|++|+|||+.+.+||.+.+.
T Consensus        43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~   85 (179)
T d1ps9a3          43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIA   85 (179)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHH
T ss_pred             CcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEE
Confidence            5899999999999999999999999999999999999987643

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=9.9e-13  Score=92.94  Aligned_cols=40  Identities=25%  Similarity=0.414  Sum_probs=37.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      .+||+|||||++||+||..|+++|++|+|||+++.+||..
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~   44 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRV   44 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccE
Confidence            3589999999999999999999999999999999999853

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.28  E-value=1.2e-12  Score=91.31  Aligned_cols=39  Identities=26%  Similarity=0.420  Sum_probs=36.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      |+|+|||||++||++|..|+++|++|+|||+++.+||..
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~   39 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAV   39 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceE
Confidence            689999999999999999999999999999999998753

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.27  E-value=1.3e-12  Score=92.68  Aligned_cols=40  Identities=30%  Similarity=0.411  Sum_probs=37.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      +|+|+|||||++||++|..|+++|++|+|||+++.+||..
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~   69 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRV   69 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCee
Confidence            5799999999999999999999999999999999999753

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.26  E-value=1.6e-12  Score=88.84  Aligned_cols=39  Identities=26%  Similarity=0.471  Sum_probs=35.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCCCceee
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFERAKGLTQTH   41 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~~Gg~~   41 (143)
                      .||+|||||++||++|..|+++|+ +|+|||+++.+||.+
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~   40 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRM   40 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceE
Confidence            479999999999999999999996 799999999998754

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.24  E-value=9.7e-13  Score=90.15  Aligned_cols=43  Identities=14%  Similarity=0.088  Sum_probs=39.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC-------CeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREG-------YLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g-------~~v~v~Er~~~~Gg~~~~~   44 (143)
                      ++||+|||||+|||+||..|+++|       ++|+|||+.+.+||.|.+.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~g   51 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSG   51 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHT
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeec
Confidence            579999999999999999999987       4899999999999998764

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.24  E-value=3.3e-12  Score=91.76  Aligned_cols=40  Identities=20%  Similarity=0.352  Sum_probs=38.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      .|+|+|||||++||++|..|++.|++|+|+|+++.+||.+
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~   41 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS   41 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCee
Confidence            6899999999999999999999999999999999999875

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.21  E-value=1.7e-11  Score=76.49  Aligned_cols=89  Identities=15%  Similarity=0.188  Sum_probs=60.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeecCCCccCccCCccccccccccceeeeeeccccCCCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAMPQVELQPGLVLTALSGQIYIGEIMNFREYPFLARNDG   81 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (143)
                      .++|+|||||+.|+-+|..|++.|.+|+++|+++.+-.                     ..++..+..+           
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~---------------------~~~~~~~~~~-----------   77 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS---------------------RAAPATLADF-----------   77 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT---------------------TTSCHHHHHH-----------
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecccccc---------------------ccCCHHHHHH-----------
Confidence            47899999999999999999999999999998753210                     0001110000           


Q ss_pred             CCCCCcCCCCceeeceEEEEEEeeeccCCCCeEEcCceEEEeecceEEEccCcEEEeeeEeC
Q 038409           82 TADPRRFRGHWETAGVAKVYIASKLVAGYNNMLLYSMIESIHENGSVVIRIQRVIFTDIIQH  143 (143)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~~v~~~dG~~~~aD~vI~  143 (143)
                                          +.+.+.....+++++.+++++.++. ++++||+++++|+||+
T Consensus        78 --------------------~~~~l~~~GV~i~~~~~v~~~~~~~-v~l~dg~~i~~D~vi~  118 (121)
T d1d7ya2          78 --------------------VARYHAAQGVDLRFERSVTGSVDGV-VLLDDGTRIAADMVVV  118 (121)
T ss_dssp             --------------------HHHHHHTTTCEEEESCCEEEEETTE-EEETTSCEEECSEEEE
T ss_pred             --------------------HHHHHHHCCcEEEeCCEEEEEeCCE-EEECCCCEEECCEEEE
Confidence                                0001011223556677788887754 9999999999999984

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.21  E-value=5e-12  Score=84.20  Aligned_cols=43  Identities=30%  Similarity=0.466  Sum_probs=39.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~~Gg~~~~~   44 (143)
                      +|||+|||||++||++|..|++.|+ +|+||||++.+||.+.+.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~   47 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE   47 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHT
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhh
Confidence            6899999999999999999999999 599999999998877644

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.20  E-value=5.5e-12  Score=85.67  Aligned_cols=39  Identities=13%  Similarity=0.177  Sum_probs=36.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      .+|+|||||++|+++|..|+++|++|+|+|+++.+||.+
T Consensus         6 yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~   44 (297)
T d2bcgg1           6 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEA   44 (297)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcce
Confidence            379999999999999999999999999999999999865

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=5.3e-12  Score=90.01  Aligned_cols=41  Identities=17%  Similarity=0.269  Sum_probs=38.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      |.+|+|||||++|+++|..|++.|++|+|+|+++.+||.+.
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~   41 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAY   41 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGC
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceE
Confidence            46899999999999999999999999999999999998753

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.2e-11  Score=88.31  Aligned_cols=39  Identities=23%  Similarity=0.441  Sum_probs=36.3

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      +|+|||||++||++|..|+++|++|+|||+++.+||.+.
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~   39 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTY   39 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceee
Confidence            589999999999999999999999999999999998543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=1.7e-11  Score=75.94  Aligned_cols=35  Identities=23%  Similarity=0.278  Sum_probs=32.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||||+.|+-+|..|++.|.+|+++|+++.
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            47899999999999999999999999999999754

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.14  E-value=3.9e-11  Score=75.00  Aligned_cols=35  Identities=20%  Similarity=0.392  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|+|||||+.|+-+|..|++.|.+|+++|+.+.
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence            46899999999999999999999999999999753

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.10  E-value=1.5e-11  Score=84.07  Aligned_cols=42  Identities=14%  Similarity=0.146  Sum_probs=38.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .||+|||||++||+||..|++.  |++|+|||+.+.+||.+.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~   45 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFG   45 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHT
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhh
Confidence            5899999999999999999875  78999999999999987765

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.10  E-value=3.3e-11  Score=82.82  Aligned_cols=43  Identities=23%  Similarity=0.353  Sum_probs=40.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .++|+|||||++||++|..|++.|++|+|||+.+.+||.|.+.
T Consensus        49 ~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~   91 (233)
T d1djqa3          49 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQV   91 (233)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHH
T ss_pred             CceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccc
Confidence            4799999999999999999999999999999999999988754

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.07  E-value=6.7e-11  Score=81.46  Aligned_cols=41  Identities=24%  Similarity=0.422  Sum_probs=37.6

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceee
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTH   41 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~   41 (143)
                      |..+|+|||||++|+++|+.|++.|++|+|+||++.+|+.+
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~   41 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKL   41 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcce
Confidence            67899999999999999999999999999999998877543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=99.06  E-value=7.7e-11  Score=80.93  Aligned_cols=34  Identities=26%  Similarity=0.518  Sum_probs=31.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +||+|||||++||++|+.|+++|++|+||||...
T Consensus         7 ~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~   40 (268)
T d1c0pa1           7 KRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (268)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            5899999999999999999999999999999653

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.03  E-value=8.7e-11  Score=74.32  Aligned_cols=35  Identities=17%  Similarity=0.305  Sum_probs=32.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence            47899999999999999999999999999998754

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.02  E-value=6.8e-11  Score=83.11  Aligned_cols=42  Identities=24%  Similarity=0.354  Sum_probs=37.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHH-CCCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSR-EGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~-~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .+|+|||||++||++|+.|++ .|++|+|+|+++.+||.|.+.
T Consensus        34 ~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~   76 (278)
T d1rp0a1          34 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLG   76 (278)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeec
Confidence            479999999999999999987 599999999999999877643

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.01  E-value=1e-10  Score=82.23  Aligned_cols=36  Identities=36%  Similarity=0.504  Sum_probs=33.9

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |..+|+|||||++||++|..|++.|++|+|+||++.
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            667999999999999999999999999999999875

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.97  E-value=2e-10  Score=71.03  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=32.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||||..|+-+|..|++.|.+|+++||++.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence            47899999999999999999999999999998653

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=4.1e-10  Score=76.51  Aligned_cols=42  Identities=26%  Similarity=0.362  Sum_probs=38.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .+|+|||||++|+++|+.|++.|.+|+|+|+++.+||.|.+.
T Consensus         6 yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~   47 (233)
T d1v59a1           6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNV   47 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEe
Confidence            479999999999999999999999999999999999987643

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.91  E-value=5.2e-10  Score=69.09  Aligned_cols=34  Identities=9%  Similarity=0.107  Sum_probs=28.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHH---CCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSR---EGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~---~g~~v~v~Er~~   35 (143)
                      +++++|||||+.|+-+|..|.+   ++.+|+++|+.+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            5799999999999999976654   456899999864

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.91  E-value=6.2e-10  Score=77.01  Aligned_cols=37  Identities=32%  Similarity=0.548  Sum_probs=34.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ   39 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg   39 (143)
                      .+|+|||||++|+++|+.|++.|++|+|+||.+.+|.
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~   41 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGR   41 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCH
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence            4799999999999999999999999999999988763

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.86  E-value=8.6e-10  Score=74.44  Aligned_cols=42  Identities=24%  Similarity=0.370  Sum_probs=38.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .+|+|||||++|+++|..+++.|.+|+|+|+++.+||.|.+.
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~   45 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNV   45 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecc
Confidence            589999999999999999999999999999999999987644

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.86  E-value=8.8e-10  Score=75.12  Aligned_cols=40  Identities=28%  Similarity=0.429  Sum_probs=37.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .+|+|||||++||++|..|++.|.+|+|+|+.+.+||.+.
T Consensus         7 yDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~   46 (229)
T d1ojta1           7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL   46 (229)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            4799999999999999999999999999999998998765

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.3e-09  Score=67.86  Aligned_cols=34  Identities=21%  Similarity=0.203  Sum_probs=29.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHH----HCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELS----REGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~----~~g~~v~v~Er~~   35 (143)
                      .++++|||||+.|+-+|..|.    +.|.+|+++|+.+
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            468999999999998888885    3589999999864

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.85  E-value=1.6e-09  Score=66.70  Aligned_cols=35  Identities=14%  Similarity=0.103  Sum_probs=29.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHH---HCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELS---REGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~---~~g~~v~v~Er~~~   36 (143)
                      +++++|||||+.|+-+|..|.   +.|.+|+++|+++.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            579999999999999987655   44889999998653

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.84  E-value=2.1e-09  Score=70.80  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=31.2

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |..+|+|||||++|+.+|..|++.|.++++++..+
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEec
Confidence            67799999999999999999999999888887654

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.82  E-value=8e-10  Score=79.04  Aligned_cols=54  Identities=24%  Similarity=0.314  Sum_probs=39.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHH-----HCCCeEEEEeeCCCC---ceeeeecCCC--ccCccCCcc
Q 038409            3 CHAALIGAGTAGLGATRELS-----REGYLLVVFERAKGL---TQTHLAMPQV--ELQPGLVLT   56 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~-----~~g~~v~v~Er~~~~---Gg~~~~~~~~--~~~~~g~~~   56 (143)
                      .+|+|||||++|+++|..|+     ++|++|+||||++.+   |.....+++.  .++.+|+.+
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~~~L~~lGl~~   71 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLAD   71 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHH
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEECHHHHHHHHHcCChH
Confidence            47999999999999999996     579999999998763   2222333332  145667654

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.81  E-value=2.3e-09  Score=74.43  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=31.1

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|||||++|+++|+.|+++|.+|+|+||...
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~~   38 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGTM   38 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSST
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            599999999999999999999999999999754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=1.6e-09  Score=73.02  Aligned_cols=41  Identities=20%  Similarity=0.280  Sum_probs=37.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      .+|+|||||++|+++|..+++.|.+|+|+|+. .+||+|.+.
T Consensus         3 yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~~~   43 (217)
T d1gesa1           3 YDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNV   43 (217)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEecc
Confidence            47999999999999999999999999999984 689988644

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.78  E-value=2e-09  Score=78.84  Aligned_cols=36  Identities=28%  Similarity=0.522  Sum_probs=33.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHH------CCCeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSR------EGYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~------~g~~v~v~Er~~~~G   38 (143)
                      .+|+|||||+||+++|+.|++      .|++|+|+||...+|
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG   74 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG   74 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTT
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCC
Confidence            489999999999999999998      799999999988765

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.74  E-value=4.3e-09  Score=74.40  Aligned_cols=37  Identities=19%  Similarity=0.399  Sum_probs=34.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ   39 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg   39 (143)
                      .+|+|||+|++|+++|+.|++.|.+|+|+||.+..||
T Consensus        17 ~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG   53 (308)
T d1y0pa2          17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG   53 (308)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence            4799999999999999999999999999999887653

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.73  E-value=5.2e-09  Score=72.93  Aligned_cols=35  Identities=20%  Similarity=0.431  Sum_probs=32.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ..+|+|||||++|+++|+.|+++|++|+|+||.+.
T Consensus         3 ~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~   37 (281)
T d2gf3a1           3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP   37 (281)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            35799999999999999999999999999999754

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=3.3e-09  Score=75.43  Aligned_cols=41  Identities=17%  Similarity=0.337  Sum_probs=36.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~Gg~~~~   43 (143)
                      ++|+|||||++||++|..|+++  |++|+|||+.+.+||.+.+
T Consensus        51 ~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T d2gjca1          51 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL   93 (311)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence            5799999999999999999964  9999999999998876654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.69  E-value=8e-09  Score=69.51  Aligned_cols=36  Identities=28%  Similarity=0.387  Sum_probs=32.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      ..+|+|||||++|++||+.+++.|.+|+|+|+....
T Consensus         3 kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~   38 (229)
T d3lada1           3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGK   38 (229)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCT
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence            358999999999999999999999999999986543

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.69  E-value=5e-09  Score=70.49  Aligned_cols=42  Identities=21%  Similarity=0.354  Sum_probs=36.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      ..+|+|||||++|+++|..+++.|.+|+|+|+. .+||.+.+.
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~-~~GG~~~~~   44 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNV   44 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecC-CCCcceecc
Confidence            468999999999999999999999999999984 467776543

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.67  E-value=8.1e-09  Score=73.53  Aligned_cols=37  Identities=24%  Similarity=0.370  Sum_probs=33.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ   39 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg   39 (143)
                      .+|+|||+|++|+++|+.|++.|.+|+|+||.+..||
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG   60 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGG   60 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCT
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            4799999999999999999999999999999877654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.66  E-value=3.3e-09  Score=71.69  Aligned_cols=42  Identities=26%  Similarity=0.320  Sum_probs=37.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeeec
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLAM   44 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~~   44 (143)
                      ..+++|||||++|+.+|..+++.|.+|+|+|+. .+||.|.+.
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c~~~   46 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLNI   46 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCccccc
Confidence            468999999999999999999999999999985 578887643

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.66  E-value=6.2e-09  Score=67.31  Aligned_cols=31  Identities=23%  Similarity=0.586  Sum_probs=27.9

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      ||+|||||++|+.+|..|++ +.+|+|+|+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            79999999999999999965 68999999864

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=7.3e-09  Score=68.53  Aligned_cols=35  Identities=20%  Similarity=0.286  Sum_probs=32.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|+|||||++||++|+.|++.|.+|+|+|+...
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~   39 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSST
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecc
Confidence            36899999999999999999999999999998654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.66  E-value=2.2e-08  Score=61.43  Aligned_cols=35  Identities=20%  Similarity=0.281  Sum_probs=32.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++++|||||+.|+-+|..|++.|.+|+++|+.+.
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            57999999999999999999999999999999764

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.61  E-value=1.3e-08  Score=72.41  Aligned_cols=37  Identities=22%  Similarity=0.382  Sum_probs=33.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCce
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQ   39 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg   39 (143)
                      .+|+|||+|++||++|+.|++.|.+|+|+||.+..||
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG   56 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGG   56 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCT
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            3699999999999999999999999999999877553

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.61  E-value=1.5e-08  Score=72.28  Aligned_cols=35  Identities=29%  Similarity=0.453  Sum_probs=32.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      .+|+|||+|++||++|+.|+++|.+|+|+|+.+..
T Consensus         6 ~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~   40 (336)
T d2bs2a2           6 CDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK   40 (336)
T ss_dssp             CSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            36999999999999999999999999999997653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.61  E-value=1.7e-08  Score=70.97  Aligned_cols=33  Identities=27%  Similarity=0.509  Sum_probs=30.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~   35 (143)
                      .+|+|||||++|+++|+.|+++|+ +|+|+||++
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            489999999999999999999996 699999975

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.60  E-value=2.3e-09  Score=72.87  Aligned_cols=31  Identities=19%  Similarity=0.193  Sum_probs=27.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFER   33 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er   33 (143)
                      |||+|||||++||++|+.|+++|++|+++|+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            6899999999999999999999987666655

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.60  E-value=1.5e-08  Score=67.15  Aligned_cols=35  Identities=20%  Similarity=0.254  Sum_probs=32.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|+|||||++|+++|+.|++.|.+++|+|+...
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~   39 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSB
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecc
Confidence            36899999999999999999999999999998654

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=2.7e-08  Score=67.58  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=31.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||||++|+++|+.+++.|.+|+|+|+.+.
T Consensus         4 YDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~   37 (235)
T d1h6va1           4 FDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTP   37 (235)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            5799999999999999999999999999998654

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.7e-08  Score=67.12  Aligned_cols=33  Identities=24%  Similarity=0.371  Sum_probs=28.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      .+++|||||++|+.+|..|++.+.  +|+++++.+
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~   39 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDP   39 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence            468999999999999999998876  699998754

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.57  E-value=2.1e-08  Score=69.41  Aligned_cols=40  Identities=25%  Similarity=0.445  Sum_probs=36.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .+++|||||++|+.+|..+++.|.+|.|+|+. .+||+|.+
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-~~GGtc~n   41 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCVN   41 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCeEEe
Confidence            47999999999999999999999999999984 58998753

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.57  E-value=3.7e-08  Score=60.26  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=32.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++++|||||+.|+-+|..|++.|.+|+++|+.+.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence            57999999999999999999999999999999754

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.54  E-value=2.4e-07  Score=55.80  Aligned_cols=32  Identities=9%  Similarity=0.075  Sum_probs=27.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFER   33 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er   33 (143)
                      +|+|+|||+|.+|+..|..|++.+-++++..+
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~   63 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSL   63 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEEC
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEe
Confidence            68999999999999999999987766655544

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=3.5e-08  Score=64.51  Aligned_cols=38  Identities=21%  Similarity=0.295  Sum_probs=33.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .+|+|||||++|++||+.+.+.|.+++|+|++  .||.+.
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~   39 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQIL   39 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGG
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCccc
Confidence            47999999999999999999999999999975  455443

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.49  E-value=6.1e-08  Score=67.10  Aligned_cols=41  Identities=24%  Similarity=0.198  Sum_probs=37.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .+++|||||++|+.+|..+++.|.+|+++|+.+.+||.|..
T Consensus        43 yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n   83 (261)
T d1mo9a1          43 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPH   83 (261)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccc
Confidence            46999999999999999999999999999999999998763

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=1.1e-07  Score=58.81  Aligned_cols=35  Identities=29%  Similarity=0.318  Sum_probs=32.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++++|||||+.|+-+|..|++.|.+|+++|+++.
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence            57999999999999999999999999999998754

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.48  E-value=9e-08  Score=59.11  Aligned_cols=34  Identities=29%  Similarity=0.483  Sum_probs=31.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++++|||||+.|+-+|..|++.|.+|+++|+++.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            6899999999999999999999999999998754

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=4e-08  Score=69.39  Aligned_cols=37  Identities=24%  Similarity=0.504  Sum_probs=32.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCcee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQT   40 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~   40 (143)
                      .+|+|||+|++||++|+.+++.| +|+|+|+.+..||.
T Consensus         8 ~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~   44 (305)
T d1chua2           8 CDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGS   44 (305)
T ss_dssp             CSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC--
T ss_pred             CCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCc
Confidence            58999999999999999998888 99999998876654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=5.4e-08  Score=65.34  Aligned_cols=40  Identities=28%  Similarity=0.380  Sum_probs=35.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~~   43 (143)
                      .+|+|||||++|+++|..+++.|.+|+|+|+ ..+||.+..
T Consensus         4 yDviIIG~GpaG~~aA~~aar~G~kV~vIEk-~~~GG~c~n   43 (221)
T d3grsa1           4 YDYLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTCVN   43 (221)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCCCCcccc
Confidence            5799999999999999999999999999997 456776643

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.2e-07  Score=58.85  Aligned_cols=35  Identities=20%  Similarity=0.229  Sum_probs=32.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++++|||||..|+-+|..|++.|.+|+++||++.
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            47999999999999999999999999999999754

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.46  E-value=7.9e-08  Score=62.16  Aligned_cols=35  Identities=17%  Similarity=0.310  Sum_probs=31.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCC--CeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREG--YLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g--~~v~v~Er~~~   36 (143)
                      +|||+|||||++|+.+|..|++.+  .+|+++|+.+.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            689999999999999999999987  48999998765

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.45  E-value=7.5e-08  Score=69.02  Aligned_cols=34  Identities=26%  Similarity=0.516  Sum_probs=31.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|+|||+|++|+++|..|++.|++|+|+|+...
T Consensus         5 yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~   38 (379)
T d2f5va1           5 YDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEI   38 (379)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCC
Confidence            4799999999999999999999999999998644

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.44  E-value=1.9e-07  Score=57.32  Aligned_cols=35  Identities=29%  Similarity=0.355  Sum_probs=32.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++++|||||..|+-.|..|++.|.+|+++|+++.
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            57899999999999999999999999999998753

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.43  E-value=8e-08  Score=68.78  Aligned_cols=36  Identities=28%  Similarity=0.384  Sum_probs=31.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHH----CCCeEEEEeeCCCCc
Q 038409            3 CHAALIGAGTAGLGATRELSR----EGYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~----~g~~v~v~Er~~~~G   38 (143)
                      .+|+|||+|++||++|+.|++    .|.+|+|+||.+..|
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~g   61 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVER   61 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTT
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCC
Confidence            479999999999999999875    699999999976644

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=5.9e-08  Score=69.35  Aligned_cols=35  Identities=29%  Similarity=0.437  Sum_probs=32.4

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      +|+|||+|++||++|+.++++|.+|+|+||.+..|
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~g   43 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTR   43 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            69999999999999999999999999999977644

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.36  E-value=9.4e-08  Score=65.07  Aligned_cols=40  Identities=18%  Similarity=0.300  Sum_probs=33.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC---CeEEEEeeCCCCceeeee
Q 038409            3 CHAALIGAGTAGLGATRELSREG---YLLVVFERAKGLTQTHLA   43 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g---~~v~v~Er~~~~Gg~~~~   43 (143)
                      .||+|||+|++|++||+.+++.|   .+|+++|+ ..+||.|.+
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~cln   44 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAVL   44 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCceeec
Confidence            58999999999999999887654   68999997 568888764

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.35  E-value=2.2e-07  Score=66.79  Aligned_cols=31  Identities=23%  Similarity=0.332  Sum_probs=29.8

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      .|+|||+|++|+.+|..|+++|++|+|+|+.
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence            6999999999999999999999999999985

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.34  E-value=3.8e-07  Score=56.26  Aligned_cols=33  Identities=21%  Similarity=0.259  Sum_probs=31.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +++++|||||+.|+-.|..|++.|.+|+|+++.
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            578999999999999999999999999999974

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=3.1e-07  Score=53.95  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=32.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|+|.|.+|+++|..|.+.|.+|+++|.+..
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            58999999999999999999999999999998643

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.33  E-value=2.2e-07  Score=57.39  Aligned_cols=35  Identities=31%  Similarity=0.313  Sum_probs=32.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++++|||||..|+-+|..|++.|.+|+++||.+.
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence            57999999999999999999999999999999753

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.33  E-value=2.3e-07  Score=60.53  Aligned_cols=35  Identities=20%  Similarity=0.286  Sum_probs=32.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .|+|+|||+|..|++.|..|+++|++|++|+|.+.
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~   35 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ   35 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            48999999999999999999999999999998654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.30  E-value=5.2e-07  Score=55.26  Aligned_cols=35  Identities=11%  Similarity=0.184  Sum_probs=32.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||||+.|+-.|..|++.|.+++++|+++.
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence            47899999999999999999999999999998754

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.30  E-value=2.6e-07  Score=66.56  Aligned_cols=31  Identities=29%  Similarity=0.383  Sum_probs=29.8

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +|+|||+|++|+.+|..|+++|++|+|+|+.
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            6999999999999999999999999999985

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.28  E-value=3.6e-07  Score=61.58  Aligned_cols=33  Identities=24%  Similarity=0.280  Sum_probs=29.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~   34 (143)
                      +.+|+|||||++|+++|+.+++.|. +|.|+|+.
T Consensus         3 ~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~   36 (238)
T d1aoga1           3 IFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQ   36 (238)
T ss_dssp             SBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEee
Confidence            5689999999999999999999876 68888874

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.26  E-value=5.3e-07  Score=55.83  Aligned_cols=35  Identities=31%  Similarity=0.346  Sum_probs=32.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++++|||||..|+-+|..|++.|.+|+++|+++.
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            57899999999999999999999999999999754

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.23  E-value=6.3e-07  Score=61.04  Aligned_cols=34  Identities=18%  Similarity=0.327  Sum_probs=31.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      ..+|+|||||++|+.||+++++.|.++.+++++-
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~   35 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   35 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEecc
Confidence            3689999999999999999999999999999863

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.21  E-value=7.5e-07  Score=58.88  Aligned_cols=35  Identities=17%  Similarity=0.262  Sum_probs=30.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~   37 (143)
                      |||+|||||.+|+.+|..|++.  +.+|++|||.+.+
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            6899999999999999999986  4589999987543

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=5.6e-07  Score=63.76  Aligned_cols=35  Identities=23%  Similarity=0.386  Sum_probs=31.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSRE--GYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~~   37 (143)
                      .+|+|||+|++||++|+.+++.  |.+|+|+|+.+..
T Consensus         6 ~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~   42 (311)
T d1kf6a2           6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPM   42 (311)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGG
T ss_pred             cCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence            4799999999999999999986  6789999997654

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=1.2e-06  Score=56.04  Aligned_cols=35  Identities=17%  Similarity=0.207  Sum_probs=32.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGL   37 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~   37 (143)
                      |||+|||+|..|...|..|++.|++|+++.|.+..
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            68999999999999999999999999999998763

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.16  E-value=9.6e-07  Score=57.02  Aligned_cols=35  Identities=17%  Similarity=0.182  Sum_probs=32.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .|+|+|||||..|..+|..|.+.|++|+|++|...
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            58999999999999999999999999999998755

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.13  E-value=1.3e-06  Score=56.61  Aligned_cols=35  Identities=17%  Similarity=0.245  Sum_probs=31.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|+|||||++|+.+|..|++.|.+++++++.+.
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence            46899999999999999999999999999987654

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.11  E-value=7.3e-07  Score=60.52  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=29.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      .+|+|||+|++|+++|+.+++.|. +|.|+|+...
T Consensus         4 YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            579999999999999999999875 6899997654

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.08  E-value=1.7e-06  Score=62.33  Aligned_cols=34  Identities=29%  Similarity=0.506  Sum_probs=31.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      ..+++|||+|.+|+.+|..|++.|.+|+|+|+..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            4589999999999999999999999999999874

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=2.5e-06  Score=56.49  Aligned_cols=36  Identities=22%  Similarity=0.462  Sum_probs=32.8

Q ss_pred             CCCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            1 MSCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         1 ~~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |-++|+|||||..|...|..+++.|++|+++|+.+.
T Consensus         3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            347999999999999999999999999999998654

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.90  E-value=5.4e-06  Score=60.36  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=30.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREG-YLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~   36 (143)
                      .+++|||+|.+|+.+|..|++.+ ++|.|+|+.+.
T Consensus        25 yD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             eeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            47999999999999999999987 79999999753

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.86  E-value=6.2e-06  Score=59.82  Aligned_cols=33  Identities=21%  Similarity=0.378  Sum_probs=29.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREG-YLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~   35 (143)
                      .+++|||+|.+|+.+|..|++.+ ++|.|+|+.+
T Consensus        18 yD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          18 VDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             EEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            47999999999999999999875 8999999875

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.86  E-value=4.7e-06  Score=54.81  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=31.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||+|..|...|..++++|++|++||+.+.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            6899999999999999999999999999998654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.79  E-value=1.3e-05  Score=49.56  Aligned_cols=34  Identities=24%  Similarity=0.373  Sum_probs=31.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|+|+|+|.-|...|..|.+.|++|+++|+.+.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            6899999999999999999999999999998654

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.78  E-value=1.5e-05  Score=51.06  Aligned_cols=34  Identities=24%  Similarity=0.441  Sum_probs=31.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |||.|||+|.-|.+.|..|+++|++|++|+|++.
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~   34 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQS   34 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCch
Confidence            5899999999999999999999999999998643

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.77  E-value=7.1e-06  Score=54.10  Aligned_cols=35  Identities=20%  Similarity=0.262  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++||+|||||.-|.+.|..|.+.|++|+++.|.+.
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~   41 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEE   41 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHH
T ss_pred             eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHH
Confidence            35899999999999999999999999999987643

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.74  E-value=1.9e-05  Score=49.93  Aligned_cols=35  Identities=23%  Similarity=0.354  Sum_probs=32.2

Q ss_pred             CCcEEEEc-CCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIG-AGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIG-aG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+||| .|.-|...|..|+++|++|+++++...
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            57999999 699999999999999999999998654

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.73  E-value=7.9e-06  Score=58.60  Aligned_cols=32  Identities=31%  Similarity=0.569  Sum_probs=29.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      .+++|||+|.+|+.+|..|++. ++|.|+|+.+
T Consensus        27 YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~   58 (351)
T d1ju2a1          27 YDYVIVGGGTSGCPLAATLSEK-YKVLVLERGS   58 (351)
T ss_dssp             EEEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred             ccEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence            3799999999999999999886 9999999875

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.72  E-value=1.5e-05  Score=52.86  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=30.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |||+|||.|.-|+.+|..|+++|++|..||..+
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            689999999999999999999999999999754

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.65  E-value=4e-05  Score=49.30  Aligned_cols=35  Identities=17%  Similarity=0.302  Sum_probs=31.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +.+|+|||+|.+|++++..+.+.|.+|++||.+..
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~   66 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE   66 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHH
Confidence            45899999999999999999999999999998644

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.65  E-value=3.4e-05  Score=49.04  Aligned_cols=34  Identities=18%  Similarity=0.242  Sum_probs=29.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~   35 (143)
                      +++|+|||||.+|+-+|..+.+.|. +|+++.|++
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            4689999999999999999999986 588988864

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.63  E-value=2.6e-05  Score=50.80  Aligned_cols=32  Identities=19%  Similarity=0.350  Sum_probs=30.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      |+|+|||+|.-|.+.|..|.+.|++|+++.|.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            68999999999999999999999999999763

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.59  E-value=5.1e-05  Score=47.97  Aligned_cols=36  Identities=6%  Similarity=0.033  Sum_probs=31.0

Q ss_pred             CcEEEE--cCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            3 CHAALI--GAGTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~II--GaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      +.|+|+  |+|..|+.+|..|++.|.+|+++|+.+.++
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~   77 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLAN   77 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTT
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            355565  999999999999999999999999977654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.56  E-value=3.2e-05  Score=47.65  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=31.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+++|||+|..|..+|..|.+.|++|+++|+.+.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            6899999999999999999999999999997644

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.53  E-value=4.2e-05  Score=49.29  Aligned_cols=34  Identities=32%  Similarity=0.429  Sum_probs=31.0

Q ss_pred             CcEEEE-cCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALI-GAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~II-GaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |||+|| |+|.-|.++|..|.+.|++|++..|++.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            689999 6799999999999999999999998754

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.50  E-value=8.3e-05  Score=48.45  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=31.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      -+|+|||||.+|+.++....+.|.+|++||.+..
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            4899999999999999999999999999998755

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.48  E-value=6e-05  Score=48.13  Aligned_cols=35  Identities=34%  Similarity=0.550  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |++|.+||-|.-|...|..|.++|++|.+|+|++.
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~   35 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS   35 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchh
Confidence            47899999999999999999999999999998744

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.43  E-value=0.00013  Score=43.74  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=30.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +++|+|||+|..|...|..|.+.|.+++++...
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            589999999999999999999999999999754

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=7.6e-05  Score=46.98  Aligned_cols=32  Identities=28%  Similarity=0.374  Sum_probs=29.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFER   33 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er   33 (143)
                      +|+|+|||||..|+..|..|.+.|.+|+|+-.
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            58999999999999999999999999999943

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.38  E-value=6.7e-05  Score=47.80  Aligned_cols=34  Identities=32%  Similarity=0.539  Sum_probs=31.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |||.|||-|.-|...|..|.++|++|.+|+|.+.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~   34 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   34 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            5899999999999999999999999999998755

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.32  E-value=0.00016  Score=46.21  Aligned_cols=35  Identities=17%  Similarity=0.352  Sum_probs=30.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~~   36 (143)
                      ||+|+|||.|..|-+.|..|.+.|+  +|..|++++.
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~   37 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE   37 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChH
Confidence            4689999999999999999999987  6777887653

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.26  E-value=0.00013  Score=47.79  Aligned_cols=32  Identities=22%  Similarity=0.214  Sum_probs=28.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |||+|||.|.-|+.+|..|+ .|++|+.||-.+
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            68999999999999998886 599999999654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.24  E-value=0.0002  Score=46.16  Aligned_cols=34  Identities=21%  Similarity=0.512  Sum_probs=31.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |||.|||-|.-|...|..|.++|++|.+|+|.+.
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~   35 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYS   35 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            6899999999999999999999999999998543

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.21  E-value=0.0002  Score=45.02  Aligned_cols=34  Identities=18%  Similarity=0.240  Sum_probs=31.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |||.|||.|..|...|..|+++|++++++.+.+.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            5899999999999999999999999999987654

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00035  Score=42.65  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|||+|-+.+..|..|++..-+|+++-|++.
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            68999999999999999999998889999988653

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.10  E-value=0.00034  Score=45.05  Aligned_cols=34  Identities=24%  Similarity=0.482  Sum_probs=31.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+|.|||-|.-|..+|..|.++|++|.+|+|.+.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~   36 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            5899999999999999999999999999998754

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.00046  Score=44.20  Aligned_cols=35  Identities=26%  Similarity=0.270  Sum_probs=31.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|+|+|=++-+++.+|.+.|.+++|+.|...
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~   52 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVS   52 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccchHH
Confidence            57999999999999999999999999999988643

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.01  E-value=0.0004  Score=43.55  Aligned_cols=34  Identities=21%  Similarity=0.411  Sum_probs=30.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      .+||.|||+|.-|.++|..|.+.|.  ++.+|++.+
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            4699999999999999999999874  899999754

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00051  Score=41.92  Aligned_cols=35  Identities=26%  Similarity=0.318  Sum_probs=31.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|||+|.+.+..|..|.+..-+|+++-|++.
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~   64 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE   64 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEecccc
Confidence            58999999999999999999998889999988643

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=96.97  E-value=0.00046  Score=45.63  Aligned_cols=35  Identities=23%  Similarity=0.529  Sum_probs=31.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|||+|.+|+.+|..|++.+.+++++-|++.
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~   66 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH   66 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence            68999999999999999999999999888887654

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.96  E-value=0.00066  Score=42.22  Aligned_cols=34  Identities=26%  Similarity=0.461  Sum_probs=30.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY--LLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~~   36 (143)
                      |||+|||+|.-|.++|..|...+.  ++.+||..+.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            589999999999999999999874  8999997654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00067  Score=44.37  Aligned_cols=35  Identities=29%  Similarity=0.471  Sum_probs=31.4

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|||+|+|| |..|-.++..|.++|++|+++-|++.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            579999996 99999999999999999999988654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.86  E-value=0.00061  Score=42.80  Aligned_cols=34  Identities=15%  Similarity=0.216  Sum_probs=31.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |||.|||+|.-|-+.|..|.+.|+++++++|...
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~   34 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLE   34 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHH
Confidence            5899999999999999999999999999998643

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.84  E-value=0.00078  Score=42.53  Aligned_cols=35  Identities=23%  Similarity=0.289  Sum_probs=30.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      .+||+|||+|.-|.++|..|...++ ++.+++..+.
T Consensus         7 ~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           7 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence            4689999999999999998888876 8999987654

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.84  E-value=0.0009  Score=41.04  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=32.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|||+|-+.+..|..|++..-+|+++-|++.
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   68 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDA   68 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccc
Confidence            58999999999999999999998889999988754

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.81  E-value=0.00081  Score=41.87  Aligned_cols=35  Identities=23%  Similarity=0.365  Sum_probs=30.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      ++||.|||+|.-|.++|..|...+. ++.+|+..+.
T Consensus         1 r~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           1 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            3699999999999999999998876 8999987554

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.78  E-value=0.0011  Score=41.21  Aligned_cols=34  Identities=29%  Similarity=0.358  Sum_probs=29.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY--LLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~~   36 (143)
                      +||.|||+|.-|.++|..|...+.  ++.+|+..+.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            689999999999999999999876  7999997653

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.74  E-value=0.0009  Score=41.88  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=29.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      .|||.|||+|.-|.++|..|...|.  ++.+|+..+
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            3799999999999999999998875  799998653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.72  E-value=1.9e-05  Score=53.20  Aligned_cols=37  Identities=11%  Similarity=0.151  Sum_probs=33.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCc
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKGLT   38 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~G   38 (143)
                      .++|+|||||..|+.+|..|++.|.+|++++|++.+.
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIA  216 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred             CCceeEecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence            3679999999999999999999999999999987643

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.001  Score=37.11  Aligned_cols=33  Identities=12%  Similarity=0.062  Sum_probs=30.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +|+|.|+|+|-=|-..+.+.++.|+++.+++..
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~   33 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLD   33 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTT
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            479999999999999999999999999999854

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.68  E-value=0.0011  Score=41.37  Aligned_cols=33  Identities=30%  Similarity=0.501  Sum_probs=29.2

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            3 CHAALIGA-GTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      |||+|||| |.-|.++|..|...+.  ++.+++..+
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            58999996 9999999999999885  899998754

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.0018  Score=38.54  Aligned_cols=35  Identities=23%  Similarity=0.376  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ..||.|+|||--|...|.+.++.|+++.+++..+.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            35899999999999999999999999999997654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.67  E-value=0.0011  Score=41.52  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=29.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      ++||.|||+|.-|.++|+.|...+.  ++.+|+..+
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            3589999999999999999998876  799998754

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.62  E-value=0.0011  Score=42.20  Aligned_cols=35  Identities=14%  Similarity=0.345  Sum_probs=31.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      .++|+|+|+|=++-+++.+|.+.|. +++|+-|+..
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~   52 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVK   52 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHH
Confidence            4689999999999999999999997 7999988644

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.0015  Score=41.45  Aligned_cols=35  Identities=20%  Similarity=0.173  Sum_probs=31.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +.+|+|+|+|..|+.++..++..|.+|.++++++.
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            46899999999999999888888999999998765

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.59  E-value=0.0018  Score=41.05  Aligned_cols=34  Identities=12%  Similarity=0.313  Sum_probs=30.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      .+||+|||+|.-|-++|..|...|.  ++.+|++.+
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            4699999999999999999999987  799999753

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.59  E-value=0.0014  Score=41.49  Aligned_cols=35  Identities=26%  Similarity=0.331  Sum_probs=31.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +.+|+|+|+|..|+.++..++..|.+|.++++++.
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            35799999999999999999999999999997654

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.55  E-value=0.0014  Score=41.03  Aligned_cols=34  Identities=18%  Similarity=0.415  Sum_probs=30.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC-CeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREG-YLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g-~~v~v~Er~~~   36 (143)
                      |+|.+||+|.-|-+.|..|.+.| +++.+++|++.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~   35 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAE   35 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChh
Confidence            68999999999999999998876 89999998754

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.00055  Score=43.13  Aligned_cols=27  Identities=30%  Similarity=0.415  Sum_probs=24.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeE
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLL   28 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v   28 (143)
                      +++|+|||||..|+-+|..+.+.|.++
T Consensus        29 gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          29 GNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            579999999999999999999998753

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.55  E-value=0.0014  Score=44.44  Aligned_cols=35  Identities=23%  Similarity=0.240  Sum_probs=31.9

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .|||+|.|| |..|-.++..|.++|++|+++.|.+.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            579999998 99999999999999999999998654

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.51  E-value=0.0015  Score=40.63  Aligned_cols=33  Identities=15%  Similarity=0.156  Sum_probs=28.8

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      |||.|||+|.-|-++|..|...+.  ++.+|+..+
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            689999999999999999998775  699998654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.46  E-value=0.0019  Score=40.73  Aligned_cols=35  Identities=17%  Similarity=0.174  Sum_probs=30.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +.+|+|+|+|..|+.++..++..|.+|.++++++.
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~   62 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA   62 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCCccceecchhh
Confidence            35799999999999999999999999999987643

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.45  E-value=0.0017  Score=40.18  Aligned_cols=33  Identities=21%  Similarity=0.435  Sum_probs=28.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      +||+|||+|.-|.++|..|...+.  ++.+++..+
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            689999999999999999988765  799998653

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0021  Score=40.84  Aligned_cols=35  Identities=20%  Similarity=0.203  Sum_probs=30.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      +.+|+|+|+|..|+.++..++..|. +|.+.|+.+.
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT   62 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH
Confidence            3579999999999999999999998 7999987654

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.38  E-value=0.003  Score=39.54  Aligned_cols=35  Identities=20%  Similarity=0.337  Sum_probs=29.9

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      ..||.|||+|.-|-++|..|.+.+. ++.+|+..+.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~   38 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   38 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence            3589999999999999998888876 7899997654

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.38  E-value=0.0029  Score=39.35  Aligned_cols=34  Identities=29%  Similarity=0.377  Sum_probs=29.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      +.||+|||+|.-|-++|+.|...+.  ++.+++..+
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            3589999999999999999999876  799998654

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0035  Score=40.28  Aligned_cols=35  Identities=26%  Similarity=0.340  Sum_probs=31.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      +++|+|+|+|-++-+++.+|.+.|. +++|+.|.+.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            4799999999999999999999987 7999998754

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.33  E-value=0.0031  Score=44.38  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=30.9

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .|||+|.|| |..|-.++..|.++|++|+++++...
T Consensus        15 nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~   50 (363)
T d2c5aa1          15 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   50 (363)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCc
Confidence            578999985 99999999999999999999986543

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0034  Score=43.86  Aligned_cols=33  Identities=33%  Similarity=0.490  Sum_probs=30.7

Q ss_pred             CCCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEee
Q 038409            1 MSCHAALIGA-GTAGLGATRELSREGYLLVVFER   33 (143)
Q Consensus         1 ~~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er   33 (143)
                      |.|||+|.|| |..|-..+..|.+.|++|+++++
T Consensus         1 M~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            8899999976 99999999999999999999985

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.21  E-value=0.0027  Score=40.65  Aligned_cols=35  Identities=20%  Similarity=0.195  Sum_probs=30.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      +.+|+|+|+|..|+.++..++..|. +|.+.++++.
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCEEEEECCCccchhheecccccccccccccccccc
Confidence            3579999999999999999999997 7999987654

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.20  E-value=0.0037  Score=39.55  Aligned_cols=33  Identities=18%  Similarity=0.510  Sum_probs=29.3

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      .||.|||+|.-|-++|+.|...++  ++.++++.+
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            479999999999999999999876  799998753

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.003  Score=40.11  Aligned_cols=34  Identities=24%  Similarity=0.306  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|+|+|+|-|..|-..|..|+..|.+|+++|..|
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            6899999999999999999999999999999765

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.18  E-value=0.003  Score=43.01  Aligned_cols=35  Identities=17%  Similarity=0.162  Sum_probs=31.2

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+||+|.|| |..|...+..|.++|++|+++-|.+.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            468999997 99999999999999999999988644

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.17  E-value=0.0028  Score=40.48  Aligned_cols=35  Identities=26%  Similarity=0.307  Sum_probs=31.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|+|+|-++-+++.+|.+.+.+++|+-|...
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~   52 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFS   52 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHH
T ss_pred             CCEEEEECCcHHHHHHHHHHcccCceeeeccchHH
Confidence            57899999999999999999988889999998643

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.17  E-value=0.0033  Score=39.72  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=30.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~   35 (143)
                      .++|+|||+|-.|-.++..|...|. +++++-|..
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~   58 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY   58 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence            4789999999999999999999998 699998763

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.0039  Score=39.39  Aligned_cols=35  Identities=17%  Similarity=0.269  Sum_probs=30.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +.+|+|+|+|..|+.++..++..|.++.++++++.
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            46899999999999999988889999989887544

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.11  E-value=0.003  Score=46.92  Aligned_cols=40  Identities=15%  Similarity=0.116  Sum_probs=37.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCCCceeee
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKGLTQTHL   42 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~~Gg~~~   42 (143)
                      .+|+|+|.|+.=..+|.+|++.|.+|..++|++--||.|.
T Consensus         7 ~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~a   46 (491)
T d1vg0a1           7 FDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWA   46 (491)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             cCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCccc
Confidence            5899999999999999999999999999999999998775

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.07  E-value=0.0032  Score=40.25  Aligned_cols=33  Identities=21%  Similarity=0.367  Sum_probs=29.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|+|+|+|+|-++-+++.+|.+.| +++|+-|..
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence            578999999999999999998777 899998753

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.99  E-value=0.0051  Score=40.61  Aligned_cols=34  Identities=29%  Similarity=0.449  Sum_probs=28.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHH--------------------HCCC-eEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELS--------------------REGY-LLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~--------------------~~g~-~v~v~Er~~   35 (143)
                      +++|+|||+|..++.+|..|.                    +.|. +|+++-|+.
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            579999999999999998876                    4565 688887764

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.97  E-value=0.0049  Score=40.99  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=29.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHH--------------------CCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSR--------------------EGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~--------------------~g~-~v~v~Er~~~   36 (143)
                      +++|+|||+|-.++.+|..|.+                    .|. +|+++-|+..
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            5799999999999999999987                    354 7999988753

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.0078  Score=36.15  Aligned_cols=35  Identities=17%  Similarity=0.324  Sum_probs=30.0

Q ss_pred             CCcEEEEcCCH-----------HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGT-----------AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~-----------~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|+|||+|+           ++..++.+|++.|+++.++--++.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            47899999984           788999999999999999976543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.0069  Score=37.57  Aligned_cols=32  Identities=16%  Similarity=0.260  Sum_probs=30.0

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +++|+|.|..|..++..|.+.|.+++++|..+
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            69999999999999999999999999999764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.88  E-value=0.007  Score=39.04  Aligned_cols=35  Identities=23%  Similarity=0.352  Sum_probs=30.9

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|.|| |-.|..+|..|.+.|.+|++..|+..
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~   58 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD   58 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence            578999984 88999999999999999999998743

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.83  E-value=0.0055  Score=38.02  Aligned_cols=32  Identities=25%  Similarity=0.367  Sum_probs=28.0

Q ss_pred             cEEEEcC-CHHHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            4 HAALIGA-GTAGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         4 ~v~IIGa-G~~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      ||+|||| |.-|.++|..|...+.  ++.+++..+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            7999996 9999999999998876  688888654

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.78  E-value=0.008  Score=38.69  Aligned_cols=35  Identities=23%  Similarity=0.300  Sum_probs=32.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||.|..|-..|..|...|.+|..|++.+.
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CceEEEeccccccccceeeeecccccccccccccc
Confidence            57899999999999999999999999999998654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.75  E-value=0.0081  Score=41.84  Aligned_cols=35  Identities=14%  Similarity=0.027  Sum_probs=31.4

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|||+|.|| |..|..++..|.++|++|..+.|...
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            589999985 89999999999999999999998643

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.72  E-value=0.0049  Score=38.65  Aligned_cols=35  Identities=20%  Similarity=0.190  Sum_probs=30.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +.+|+|+|+|..|+.++..++..|.+|.+.++++.
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~   62 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE   62 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEeecccchhhhhHHHhcCCCeEeccCCCHH
Confidence            35899999999999999999999999999986543

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.0065  Score=36.88  Aligned_cols=34  Identities=26%  Similarity=0.486  Sum_probs=29.4

Q ss_pred             CcEEEEcCCH-----------HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGT-----------AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~-----------~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|+|||+|+           ++..++.+|++.|+++.++.-++.
T Consensus         8 kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           8 KSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             CEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            6899999986           788999999999999999876543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.57  E-value=0.0068  Score=38.61  Aligned_cols=35  Identities=17%  Similarity=0.195  Sum_probs=29.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      +.+|+|+|+|..|+.++..++..|. +|.+.++++.
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~   63 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPI   63 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHH
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccchhh
Confidence            3579999999999999999998897 6888887543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.52  E-value=0.005  Score=41.39  Aligned_cols=33  Identities=15%  Similarity=0.246  Sum_probs=30.3

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |||+|.|| |..|-..+..|.++|++|..+.|+.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            68999998 9999999999999999999998764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.52  E-value=0.0091  Score=38.03  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=29.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      +.+|+|+|+|..|+.++..++..|. .|.+.+.++.
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            3579999999999999999999998 5777776554

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.0094  Score=41.49  Aligned_cols=31  Identities=16%  Similarity=0.339  Sum_probs=28.5

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeEEEEee
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLLVVFER   33 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er   33 (143)
                      |||+|+|| |..|-.++..|.+.|++|+++++
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            57999977 99999999999999999999976

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.49  E-value=0.01  Score=38.01  Aligned_cols=33  Identities=27%  Similarity=0.325  Sum_probs=30.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      .|+|+|||=|.-|.+-|+.|+..|.+|+|==|.
T Consensus        16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~   48 (182)
T d1np3a2          16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRS   48 (182)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCT
T ss_pred             CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCC
Confidence            589999999999999999999999999887664

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.41  E-value=0.01  Score=38.49  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=28.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      +.+|+|+|+|..|+.++..++..|. +|.+.+..+.
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~   61 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA   61 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeecccch
Confidence            4579999999999999998888776 7888886543

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.37  E-value=0.011  Score=41.95  Aligned_cols=31  Identities=23%  Similarity=0.513  Sum_probs=28.2

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEe
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFE   32 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~E   32 (143)
                      +|||+|.|| |..|-.++..|.+.|++|.+++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            589999987 9999999999999999999986

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=95.32  E-value=0.0086  Score=37.88  Aligned_cols=35  Identities=17%  Similarity=0.186  Sum_probs=32.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+++|+|=|..|-.+|..|+..|.+|+|.|..|.
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI   57 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             CCEEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence            58999999999999999999999999999997653

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=95.29  E-value=0.014  Score=40.73  Aligned_cols=35  Identities=20%  Similarity=0.186  Sum_probs=31.3

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .|+|+|+|| |..|-.++..|.++|++|+++=|++.
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~   38 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLK   38 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSC
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            478999997 99999999999999999999987544

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.26  E-value=0.014  Score=36.02  Aligned_cols=30  Identities=23%  Similarity=0.397  Sum_probs=26.9

Q ss_pred             cEEEEc-CCHHHHHHHHHHHHCCC--eEEEEee
Q 038409            4 HAALIG-AGTAGLGATRELSREGY--LLVVFER   33 (143)
Q Consensus         4 ~v~IIG-aG~~Gl~~A~~L~~~g~--~v~v~Er   33 (143)
                      ||+||| +|..|-++|..|...+.  ++.+|+.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            799999 69999999999999876  6888884

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.25  E-value=0.016  Score=38.65  Aligned_cols=34  Identities=15%  Similarity=0.212  Sum_probs=25.9

Q ss_pred             CcE-EEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHA-ALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v-~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ||| +|.|| +=.|.++|..|.+.|++|.+..+++.
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            355 44565 44788999999999999999987643

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.0099  Score=39.80  Aligned_cols=31  Identities=23%  Similarity=0.412  Sum_probs=28.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEee
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFER   33 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er   33 (143)
                      .+|+|||+|-.|-.+|..|.+.|+ ++++++.
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~   62 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDF   62 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            589999999999999999999998 7888874

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.20  E-value=0.013  Score=36.32  Aligned_cols=33  Identities=27%  Similarity=0.376  Sum_probs=26.7

Q ss_pred             CcEEEEc-CCHHHHHHHHHHH-HC--CCeEEEEeeCC
Q 038409            3 CHAALIG-AGTAGLGATRELS-RE--GYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIG-aG~~Gl~~A~~L~-~~--g~~v~v~Er~~   35 (143)
                      |||+||| +|.-|-++|+.|. +.  ..++.++|..+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            6899999 5999999999885 43  35899998654

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=95.07  E-value=0.019  Score=37.39  Aligned_cols=35  Identities=14%  Similarity=0.227  Sum_probs=31.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||.|-.|-.+|..|..-|.+|..|++...
T Consensus        45 ~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          45 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPM   79 (199)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ceeeeeeecccccccccccccccceeeeccCCccc
Confidence            47899999999999999999999999999997644

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.05  E-value=0.0046  Score=37.47  Aligned_cols=34  Identities=15%  Similarity=0.167  Sum_probs=25.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC-CCeEEEE-eeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSRE-GYLLVVF-ERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~-g~~v~v~-Er~~~   36 (143)
                      .+|+|+|||-+|.+.+.++.+. +++++.| +-.+.
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~   39 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPE   39 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTT
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchH
Confidence            4899999999999998877643 6665544 54444

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.018  Score=39.64  Aligned_cols=32  Identities=22%  Similarity=0.295  Sum_probs=29.2

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEee
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFER   33 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er   33 (143)
                      .|||+|.|| |..|-..+..|.++|++|+.+++
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            479999987 99999999999999999999975

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.89  E-value=0.015  Score=33.35  Aligned_cols=35  Identities=31%  Similarity=0.464  Sum_probs=29.9

Q ss_pred             CCcEEEEcCCHHHHHH-HHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGA-TRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~-A~~L~~~g~~v~v~Er~~~   36 (143)
                      .+++-+||-|=+|+++ |..|.+.|++|+-.|+...
T Consensus         8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            4689999988888777 8999999999999997643

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=94.83  E-value=0.019  Score=38.68  Aligned_cols=35  Identities=11%  Similarity=0.173  Sum_probs=29.6

Q ss_pred             CCcEEEEcC-CH--HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GT--AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~--~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+++|.|| |-  .|.++|..|+++|++|.+..|++.
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578888886 42  788999999999999999998764

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=94.77  E-value=0.025  Score=36.68  Aligned_cols=35  Identities=14%  Similarity=0.281  Sum_probs=31.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||.|-.|-..|..|..-|.+|..|++...
T Consensus        49 gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   83 (193)
T d1mx3a1          49 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLS   83 (193)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             CceEEEeccccccccceeeeeccccceeeccCccc
Confidence            57899999999999999999999999999987543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.63  E-value=0.023  Score=36.10  Aligned_cols=34  Identities=18%  Similarity=0.295  Sum_probs=30.0

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      ..|+|+|+|..|+.+...++..|. +|.+.+.++.
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            469999999999999999999985 7999997655

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.63  E-value=0.033  Score=31.56  Aligned_cols=30  Identities=13%  Similarity=0.401  Sum_probs=26.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEe
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFE   32 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~E   32 (143)
                      |||+|||+|-=-.+.|..|.+...++.++-
T Consensus         1 MkVLviGsGgREHAia~~l~~s~~~v~~~p   30 (90)
T d1vkza2           1 VRVHILGSGGREHAIGWAFAKQGYEVHFYP   30 (90)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCeEEEec
Confidence            699999999999999999999888877774

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.60  E-value=0.029  Score=38.29  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=30.5

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|+|.|| |..|-.++..|.++|++|..+.|...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            68999987 99999999999999999999988653

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.58  E-value=0.02  Score=36.31  Aligned_cols=35  Identities=20%  Similarity=0.281  Sum_probs=29.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      +.+|+|+|+|..|+.++..++..|. +|.+.++.+.
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD   63 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceeeccCChHH
Confidence            3579999999999999999999886 6888877554

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=94.56  E-value=0.031  Score=36.31  Aligned_cols=35  Identities=11%  Similarity=0.225  Sum_probs=31.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||-|..|-..|..|..-|.+|..|++...
T Consensus        43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1          43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN   77 (197)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCeEEEecccccchhHHHhHhhhcccccccCcccc
Confidence            57899999999999999999999999999986543

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.55  E-value=0.028  Score=37.25  Aligned_cols=35  Identities=6%  Similarity=0.194  Sum_probs=30.0

Q ss_pred             CCcEEEEcCC-HHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAG-TAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG-~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|.||+ =.|.++|..|.++|++|.++++...
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            6899999884 4789999999999999999987544

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=94.53  E-value=0.023  Score=38.12  Aligned_cols=33  Identities=15%  Similarity=0.107  Sum_probs=27.2

Q ss_pred             CCcEEEEcC-CH--HHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGA-GT--AGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGa-G~--~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +|+++|.|| |.  .|.++|..|+++|.+|.+..+.
T Consensus         6 gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~   41 (268)
T d2h7ma1           6 GKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD   41 (268)
T ss_dssp             TCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            578888885 54  5788999999999999988764

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.52  E-value=0.021  Score=36.03  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=26.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeE-EEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLL-VVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v-~v~Er~~   35 (143)
                      .+|+|+|+|..|+.++..++..|.++ .+.++++
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            57999999999999999998888754 5556543

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=94.45  E-value=0.012  Score=38.44  Aligned_cols=24  Identities=25%  Similarity=0.151  Sum_probs=21.0

Q ss_pred             ceEEEeecceEEEccCcEEEeeeEeC
Q 038409          118 MIESIHENGSVVIRIQRVIFTDIIQH  143 (143)
Q Consensus       118 ~v~~~~~~~~v~~~dG~~~~aD~vI~  143 (143)
                      .|+++++++ |+++|| ++++|+|||
T Consensus       208 ~I~~~~~~g-V~~~dg-~~~~D~VV~  231 (235)
T d1w4xa2         208 PIETITPRG-VRTSER-EYELDSLVL  231 (235)
T ss_dssp             CEEEECSSE-EEESSC-EEECSEEEE
T ss_pred             CCeEEeCCe-EEECCC-EEcCCEEEe
Confidence            388999988 999998 589999997

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.43  E-value=0.036  Score=38.36  Aligned_cols=33  Identities=15%  Similarity=0.090  Sum_probs=29.3

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +|+|+|.|| |..|-..+..|.+.|++|..+++.
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~   49 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNF   49 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            578888876 999999999999999999999863

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.026  Score=37.69  Aligned_cols=35  Identities=17%  Similarity=0.250  Sum_probs=28.7

Q ss_pred             CCcEEEEcCCH---HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGT---AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~---~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|.||+-   .|.++|..|.+.|++|.+..|++.
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            57788888754   477899999999999999988755

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.21  E-value=0.02  Score=37.01  Aligned_cols=31  Identities=19%  Similarity=0.150  Sum_probs=26.5

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEe
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFE   32 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~E   32 (143)
                      +++|+|.|| |..|..++..|.++|++++++.
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            589999995 9999999999999998755543

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.20  E-value=0.027  Score=37.67  Aligned_cols=35  Identities=17%  Similarity=0.254  Sum_probs=28.4

Q ss_pred             CCcEEEEcCCH---HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGT---AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~---~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|.++|.||+-   .|.++|..|.++|.+|.+..|++.
T Consensus         8 gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             TCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            46788888642   689999999999999988877654

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.19  E-value=0.043  Score=37.70  Aligned_cols=33  Identities=27%  Similarity=0.229  Sum_probs=29.2

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |+++|.|| |..|..++..|.++|++|..+.|..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            67778776 9999999999999999999999853

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=94.18  E-value=0.027  Score=37.87  Aligned_cols=35  Identities=23%  Similarity=0.317  Sum_probs=29.0

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|.++|.||+- .|.++|..|++.|.+|.+..|+..
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            46777777754 788999999999999999998754

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.16  E-value=0.034  Score=37.78  Aligned_cols=33  Identities=18%  Similarity=0.221  Sum_probs=28.0

Q ss_pred             CCcEEEEcCCH---HHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGT---AGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~---~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +|+++|.||+-   .|.++|..|+++|.+|.+..|.
T Consensus         8 gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           8 GKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             TCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            47788889753   7899999999999999998764

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=94.14  E-value=0.019  Score=39.91  Aligned_cols=30  Identities=13%  Similarity=0.002  Sum_probs=25.6

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEE
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVF   31 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~   31 (143)
                      +|+|+|.|| |..|-.++..|.+.|++|.++
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~   32 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVT   32 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEE
Confidence            689999985 999999999999998865444

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.11  E-value=0.035  Score=34.79  Aligned_cols=34  Identities=21%  Similarity=0.347  Sum_probs=28.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      .+|+|+|+|..|+.++..++..|. +|...++.+.
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            479999999999999999988866 6888887654

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.043  Score=37.84  Aligned_cols=33  Identities=21%  Similarity=0.239  Sum_probs=29.1

Q ss_pred             CcE-EEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHA-ALIGA-GTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v-~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      ||| +|.|| |..|-.++..|.++|++|..+.|.+
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            688 67776 8999999999999999999999864

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=94.06  E-value=0.044  Score=35.67  Aligned_cols=33  Identities=18%  Similarity=0.217  Sum_probs=30.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +++|+|-|-|-.|..+|..|.+.|.+|++.+..
T Consensus        27 gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          27 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            589999999999999999999999999988754

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.00  E-value=0.03  Score=37.28  Aligned_cols=35  Identities=26%  Similarity=0.421  Sum_probs=29.2

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|.++|.||+- .|.++|..|.+.|.+|.+..|+..
T Consensus         7 gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           7 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   42 (237)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            56777777754 788999999999999999998765

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Peptidoglycan biosynthesis glycosyltransferase MurG
domain: Peptidoglycan biosynthesis glycosyltransferase MurG
species: Escherichia coli [TaxId: 562]

Probab=93.94  E-value=0.029  Score=38.45  Aligned_cols=32  Identities=19%  Similarity=0.325  Sum_probs=26.0

Q ss_pred             CcEEEEcCCHHHH-----HHHHHHHHCCCeEEEEeeC
Q 038409            3 CHAALIGAGTAGL-----GATRELSREGYLLVVFERA   34 (143)
Q Consensus         3 ~~v~IIGaG~~Gl-----~~A~~L~~~g~~v~v~Er~   34 (143)
                      |||+|.+||.+|+     +.|.+|.++|++|..+...
T Consensus         1 kkili~~~GtGGHv~~a~al~~~L~~~G~eV~~i~~~   37 (351)
T d1f0ka_           1 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTA   37 (351)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence            7899999998887     4667777889999988643

>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: D-Alanine ligase N-terminal domain
domain: D-Ala-D-Ala ligase, N-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

Probab=93.88  E-value=0.055  Score=30.94  Aligned_cols=34  Identities=21%  Similarity=0.215  Sum_probs=29.2

Q ss_pred             CCCcEEEEcCCH---------HHHHHHHHHHHCCCeEEEEeeC
Q 038409            1 MSCHAALIGAGT---------AGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         1 ~~~~v~IIGaG~---------~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      |.+||+|+-||.         +|.+...+|.+.++++..+|-.
T Consensus         1 M~~kI~vl~GG~S~E~~iSl~Sa~~v~~~L~~~~~~v~~i~~~   43 (96)
T d1iowa1           1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK   43 (96)
T ss_dssp             CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCceEEEEeCcCchhhHhHHhhHHHHHHHHHHcCeeEeeecCc
Confidence            788999999987         5778888899999999988854

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.042  Score=36.64  Aligned_cols=35  Identities=26%  Similarity=0.431  Sum_probs=28.3

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+++|.||+- .|.++|..|.+.|++|.+..|+..
T Consensus         7 GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~   42 (244)
T d1pr9a_           7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA   42 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            46777777754 678999999999999999988643

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.78  E-value=0.064  Score=34.33  Aligned_cols=35  Identities=14%  Similarity=0.186  Sum_probs=31.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||.|..|-..|..|...|.+|..|++...
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ceEEEEeecccchhhhhhhcccccceEeecccccc
Confidence            57899999999999999999999999999997543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.72  E-value=0.037  Score=34.73  Aligned_cols=33  Identities=18%  Similarity=0.225  Sum_probs=27.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~   35 (143)
                      ..|+|+|+|..|+.++..++..|. .+.+.++++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            579999999999999888887775 667777654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.67  E-value=0.054  Score=36.26  Aligned_cols=34  Identities=24%  Similarity=0.475  Sum_probs=26.8

Q ss_pred             CcEEEE-cCCH-HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALI-GAGT-AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~II-GaG~-~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |||++| ||+- .|.++|..|++.|.+|.+..|++.
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~   36 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDA   36 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            677555 6543 678999999999999999998643

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=93.63  E-value=0.054  Score=37.52  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=28.7

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +|+|+|.|| |..|..++..|.++|++|..+-|+
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~   44 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            579999977 999999999999999999876553

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=0.056  Score=35.81  Aligned_cols=35  Identities=20%  Similarity=0.350  Sum_probs=28.0

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|.++|.||+- .|.++|..|++.|++|.+..|+..
T Consensus         5 GKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           5 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            45566667644 678999999999999999998764

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=93.58  E-value=0.057  Score=34.57  Aligned_cols=35  Identities=26%  Similarity=0.317  Sum_probs=31.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|.|||.|..|...|..|+.-|.+|..+++...
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d2naca1          44 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL   78 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred             ccceeeccccccchhhhhhhhccCceEEEEeeccc
Confidence            47899999999999999999999999999997543

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.42  E-value=0.056  Score=35.98  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=28.1

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|+++|.||+- .|.++|..|.++|++|.+..|+.
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47778888743 77899999999999999998764

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=93.39  E-value=0.063  Score=35.85  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=28.5

Q ss_pred             CCcEEEEcCC-HHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAG-TAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG-~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|.++|-||+ =.|.++|..|+++|++|.+..|++.
T Consensus         5 GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~   40 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   40 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5677777753 4678999999999999999998765

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.27  E-value=0.059  Score=36.31  Aligned_cols=34  Identities=21%  Similarity=0.232  Sum_probs=26.9

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|.++|.||+- .|.++|..|++.|.+|.+..|+.
T Consensus         6 gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45666667643 67899999999999999998764

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.25  E-value=0.041  Score=37.11  Aligned_cols=34  Identities=26%  Similarity=0.327  Sum_probs=28.3

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|+++|.||+- .|.++|..|+++|.+|.+..|+.
T Consensus        14 GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          14 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46777777765 68899999999999999998864

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.23  E-value=0.052  Score=35.54  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=27.6

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |.++|-|| +=.|.++|..|+++|++|.+.+|+..
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            56666676 44678999999999999999998765

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.18  E-value=0.063  Score=33.67  Aligned_cols=34  Identities=21%  Similarity=0.303  Sum_probs=28.7

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      ..|+|+|+|-.|+.++..++..|. +|.+.++++.
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            479999999999999999998875 7888887654

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.17  E-value=0.078  Score=33.85  Aligned_cols=35  Identities=14%  Similarity=0.283  Sum_probs=31.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++++.|||.|..|-..|..|..-|.+|..|++...
T Consensus        44 ~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~   78 (184)
T d1ygya1          44 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVS   78 (184)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             ceeeeeccccchhHHHHHHhhhccceEEeecCCCC
Confidence            57899999999999999999999999999987544

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=93.17  E-value=0.062  Score=36.07  Aligned_cols=34  Identities=24%  Similarity=0.423  Sum_probs=27.9

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|.++|.||+- .|.++|..|.+.|.+|.+..|+.
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46677777744 67899999999999999999864

>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: TDP-epi-vancosaminyltransferase GtfA
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=93.17  E-value=0.041  Score=38.05  Aligned_cols=30  Identities=17%  Similarity=0.225  Sum_probs=26.6

Q ss_pred             CcEEEEcCCHHH-----HHHHHHHHHCCCeEEEEe
Q 038409            3 CHAALIGAGTAG-----LGATRELSREGYLLVVFE   32 (143)
Q Consensus         3 ~~v~IIGaG~~G-----l~~A~~L~~~g~~v~v~E   32 (143)
                      |||+|.++|..|     ++.|..|+++||+|+++=
T Consensus         1 mril~~~~gt~Ghi~P~laLA~~L~~rGh~V~~~~   35 (391)
T d1pn3a_           1 MRVLITGCGSRGDTEPLVALAARLRELGADARMCL   35 (391)
T ss_dssp             CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEEcCCChhHHHHHHHHHHHHHHCCCEEEEEE
Confidence            689999999988     578999999999999984

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=93.09  E-value=0.064  Score=37.42  Aligned_cols=33  Identities=24%  Similarity=0.264  Sum_probs=28.3

Q ss_pred             CcEEEEc-CCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIG-AGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIG-aG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |.|+|.| +|..|-.++..|.+.|++|+.+.|..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            6777888 69999999999999999999999853

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.09  E-value=0.067  Score=35.29  Aligned_cols=35  Identities=20%  Similarity=0.262  Sum_probs=28.9

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+++|.||+- .|.++|..|.+.|++|.+..|+..
T Consensus         4 gK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~   39 (234)
T d1o5ia_           4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE   39 (234)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            57788888743 788999999999999999998654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.06  E-value=0.067  Score=35.87  Aligned_cols=34  Identities=29%  Similarity=0.385  Sum_probs=26.9

Q ss_pred             CcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGT-AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |.|+|.||+- .|.++|..|.+.|++|.+..|+..
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~   45 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVG   45 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4566677643 678999999999999999987643

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.06  E-value=0.071  Score=35.64  Aligned_cols=34  Identities=18%  Similarity=0.159  Sum_probs=28.0

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|.++|.||+- .|.++|..|+++|.+|.+..|+.
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56777778743 68899999999999999998764

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.05  E-value=0.1  Score=29.31  Aligned_cols=34  Identities=12%  Similarity=0.119  Sum_probs=27.7

Q ss_pred             CcEEEEcCCHHHHH-HHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLG-ATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~-~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |||-+||-|=+|++ +|..|+++|++|+-.|+...
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~   36 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEET   36 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            68889988777764 48889999999999997643

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=93.03  E-value=0.069  Score=35.84  Aligned_cols=35  Identities=17%  Similarity=0.214  Sum_probs=28.8

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|.++|.||+- .|.++|..|.+.|.+|.+..|+..
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE   40 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            56778888754 678999999999999999998643

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.02  E-value=0.068  Score=35.16  Aligned_cols=35  Identities=14%  Similarity=0.276  Sum_probs=29.2

Q ss_pred             CCcEEEEcCC-HHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAG-TAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG-~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ..||+|.||. =.|.+.|..|.++|++|.++.|+..
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            3589898874 4788999999999999999988654

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.00  E-value=0.07  Score=35.46  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=27.6

Q ss_pred             CcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGT-AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |.++|.||+- .|.++|..|.+.|.+|.+..|+..
T Consensus         6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEG   40 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5667777643 789999999999999999998643

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.99  E-value=0.07  Score=35.58  Aligned_cols=35  Identities=23%  Similarity=0.252  Sum_probs=27.8

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|.++|.||+- .|...|..|+++|.+|.+..|+..
T Consensus         7 Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~   42 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH   42 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            45566667755 678999999999999999998753

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.97  E-value=0.045  Score=39.75  Aligned_cols=32  Identities=28%  Similarity=0.569  Sum_probs=29.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFERA   34 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~   34 (143)
                      .||+|||+|-.|..+|..|...|+ +++|++..
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            589999999999999999999998 79999853

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=92.94  E-value=0.082  Score=36.35  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=28.0

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCC-CeEEEEeeCC
Q 038409            3 CHAALIGA-GTAGLGATRELSREG-YLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g-~~v~v~Er~~   35 (143)
                      |||+|.|| |..|-.++..|.+.| ++|..+++..
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~   35 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS   35 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            58999987 999999999999988 4899987643

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.079  Score=34.66  Aligned_cols=35  Identities=23%  Similarity=0.347  Sum_probs=30.0

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCC--eEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGY--LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~--~v~v~Er~~~   36 (143)
                      +|+|+|.|| |..|-.....|.+.|.  +|.++-|++.
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~   51 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL   51 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh
Confidence            468999987 9999999999998884  8999998654

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.91  E-value=0.064  Score=34.44  Aligned_cols=34  Identities=21%  Similarity=0.184  Sum_probs=27.7

Q ss_pred             CCCcEEEEcC-CHHHHHHHHHHHHCCC--eEEEEeeC
Q 038409            1 MSCHAALIGA-GTAGLGATRELSREGY--LLVVFERA   34 (143)
Q Consensus         1 ~~~~v~IIGa-G~~Gl~~A~~L~~~g~--~v~v~Er~   34 (143)
                      .+|||+|.|| |..|-.++..|.++|+  +|.++=|+
T Consensus         1 t~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~   37 (212)
T d2a35a1           1 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARK   37 (212)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCC
Confidence            3689999999 9999999999999987  45544443

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=92.88  E-value=0.063  Score=35.48  Aligned_cols=32  Identities=25%  Similarity=0.354  Sum_probs=28.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFERA   34 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~   34 (143)
                      .+|++.|||.+|+.+|..|.+.+. ++.++++.
T Consensus        27 ~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          27 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             cEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            479999999999999999988876 68888875

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.84  E-value=0.075  Score=35.50  Aligned_cols=34  Identities=26%  Similarity=0.381  Sum_probs=27.7

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|.++|.||+- .|.++|..|++.|.+|.+..|+.
T Consensus         5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   39 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46677777743 67899999999999999998764

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.77  E-value=0.082  Score=32.85  Aligned_cols=35  Identities=14%  Similarity=0.116  Sum_probs=28.2

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      +.+|+|+|+ |..|+.++..++..|. +|.+.++++.
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~   64 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE   64 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccchh
Confidence            357999995 9999999888888874 8888887643

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=92.70  E-value=0.082  Score=35.07  Aligned_cols=35  Identities=29%  Similarity=0.368  Sum_probs=29.1

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|.++|.||+- .|.++|..|.++|++|.+..|+..
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGASLVAVDREER   40 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            56777878765 788999999999999999988654

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=92.67  E-value=0.081  Score=35.48  Aligned_cols=34  Identities=21%  Similarity=0.326  Sum_probs=27.8

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|.++|-||+- .|.++|..|+++|.+|.+..|+.
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   38 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   38 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46677777754 67899999999999999999864

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=92.67  E-value=0.052  Score=36.41  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=25.1

Q ss_pred             CcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAGT-AGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |.++|.||+- .|.++|..|+++|.+|.+..|++
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4444445543 67899999999999999998864

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=92.64  E-value=0.036  Score=34.42  Aligned_cols=25  Identities=20%  Similarity=0.304  Sum_probs=21.5

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGY   26 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~   26 (143)
                      ++||+|||| |.-|-++|..|.+..+
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccc
Confidence            459999997 9999999999987643

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.64  E-value=0.083  Score=35.32  Aligned_cols=35  Identities=20%  Similarity=0.407  Sum_probs=28.3

Q ss_pred             CCcEEEEcCC-HHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAG-TAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG-~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|.++|-||+ =.|.++|..|.++|.+|.+..|+..
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDES   41 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4677777773 4678999999999999999998643

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=92.64  E-value=0.081  Score=35.81  Aligned_cols=34  Identities=15%  Similarity=0.249  Sum_probs=27.9

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |.++|-|| +=.|.++|..|.+.|.+|.+..|++.
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAE   40 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            56777776 44788999999999999999998754

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=92.63  E-value=0.083  Score=35.44  Aligned_cols=35  Identities=26%  Similarity=0.441  Sum_probs=28.2

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|.++|.||+- .|.++|..|.+.|.+|.+..|+..
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   43 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQK   43 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            46677777753 688999999999999999998643

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=92.59  E-value=0.054  Score=36.81  Aligned_cols=35  Identities=20%  Similarity=0.342  Sum_probs=30.3

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .|||+|.|| |..|-.++..|.++|+.+.++.....
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~   37 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE   37 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh
Confidence            478999987 99999999999999999888876544

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.58  E-value=0.059  Score=36.11  Aligned_cols=34  Identities=18%  Similarity=0.193  Sum_probs=27.5

Q ss_pred             CcEEEEcCC-HHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAG-TAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG-~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |.++|.||+ =.|.++|..|.++|.+|.+..|+..
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGARVAIADINLE   40 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            567777774 3678999999999999999998643

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.58  E-value=0.24  Score=30.18  Aligned_cols=41  Identities=22%  Similarity=0.297  Sum_probs=30.7

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCC---eEEEEeeCCCCceeee
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGY---LLVVFERAKGLTQTHL   42 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~---~v~v~Er~~~~Gg~~~   42 (143)
                      .++|+|||| |..|......|.+++|   ++..+=.+...|-.+.
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~   46 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG   46 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCccee
Confidence            579999999 9999999999976543   6766655555664444

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.51  E-value=0.039  Score=34.25  Aligned_cols=33  Identities=15%  Similarity=0.289  Sum_probs=25.5

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCC-------eEEEEeeC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGY-------LLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~-------~v~v~Er~   34 (143)
                      ++||+|||| |..|-++|..|.+.+.       ...+++..
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~   43 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT   43 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc
Confidence            579999996 9999999999986432       46666643

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.50  E-value=0.094  Score=32.77  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=28.3

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +.+|+|.|| |..|+.+...++..|.+|.+..+++
T Consensus        29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~   63 (174)
T d1yb5a2          29 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTE   63 (174)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeccccccccccccccccCcccccccccc
Confidence            357999996 9999998888888899998887654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=92.49  E-value=0.1  Score=35.34  Aligned_cols=33  Identities=30%  Similarity=0.233  Sum_probs=26.7

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |.++|-|| +=.|.++|..|.+.|.+|.+..|+.
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            55666664 5578899999999999999999875

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=92.47  E-value=0.079  Score=33.42  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=24.8

Q ss_pred             CCcEEEEcCCHHHHHHHHH--HHHC----CCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRE--LSRE----GYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~--L~~~----g~~v~v~Er~~~   36 (143)
                      .+||+|||||..|.+.++.  |.+.    +.++.+++..+.
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~   42 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEE   42 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHH
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCch
Confidence            5799999999999765442  3322    358999997643

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.40  E-value=0.049  Score=32.49  Aligned_cols=32  Identities=25%  Similarity=0.360  Sum_probs=26.9

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+++|+|.|..|..++..|+  +.++.++|..+.
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~   32 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GSEVFVLAEDEN   32 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence            68999999999999999985  456788887665

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.37  E-value=0.09  Score=36.04  Aligned_cols=34  Identities=26%  Similarity=0.278  Sum_probs=26.9

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|.++|.||+- .|.++|..|.+.|.+|.+..|+.
T Consensus        12 gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1          12 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45666777643 67899999999999999998763

>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: UDP-glucosyltransferase GtfB
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=92.37  E-value=0.073  Score=36.66  Aligned_cols=30  Identities=13%  Similarity=0.168  Sum_probs=26.1

Q ss_pred             CcEEEEcCCHHH-----HHHHHHHHHCCCeEEEEe
Q 038409            3 CHAALIGAGTAG-----LGATRELSREGYLLVVFE   32 (143)
Q Consensus         3 ~~v~IIGaG~~G-----l~~A~~L~~~g~~v~v~E   32 (143)
                      |||+|.+.|..|     ++.|.+|+++||+|+++=
T Consensus         1 mkil~~~~gt~Gh~~P~lala~~L~~~Gh~V~~~~   35 (401)
T d1iira_           1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCA   35 (401)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHHHHHHCCCEEEEEe
Confidence            689999999866     688999999999999884

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=92.34  E-value=0.11  Score=34.52  Aligned_cols=35  Identities=14%  Similarity=0.202  Sum_probs=27.5

Q ss_pred             CCcEEEEcCC-HHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAG-TAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG-~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|.++|.||+ =.|.++|..|.+.|++|.+..|++.
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            4556666764 3678999999999999999998754

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=92.30  E-value=0.099  Score=35.54  Aligned_cols=30  Identities=23%  Similarity=0.351  Sum_probs=27.1

Q ss_pred             cEEEEcC-CHHHHHHHHHHHHCCCeEEEEee
Q 038409            4 HAALIGA-GTAGLGATRELSREGYLLVVFER   33 (143)
Q Consensus         4 ~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er   33 (143)
                      ||+|.|| |..|-..+..|.++|++|+++++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            7888876 99999999999999999999974

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.28  E-value=0.13  Score=34.13  Aligned_cols=33  Identities=21%  Similarity=0.214  Sum_probs=25.4

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |.++|.|| +-.|.++|..|++.|++|.+..|++
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            34444444 5578899999999999999998864

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.26  E-value=0.12  Score=35.58  Aligned_cols=31  Identities=29%  Similarity=0.338  Sum_probs=27.0

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeEEEEee
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLLVVFER   33 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er   33 (143)
                      |-|+|.|| |..|-.++..|.++|++|+++++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            55777766 89999999999999999999975

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=92.25  E-value=0.12  Score=34.58  Aligned_cols=35  Identities=20%  Similarity=0.235  Sum_probs=29.1

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|+|+|.|| +=.|.++|..|++.|.+|.+..|++.
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~   41 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEK   41 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            577888886 44688999999999999999998753

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=92.10  E-value=0.14  Score=32.81  Aligned_cols=35  Identities=11%  Similarity=0.188  Sum_probs=31.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++++.|||.|-.|-..|..|...|.++..|++...
T Consensus        47 g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1          47 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             ccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence            57899999999999999999999999999987543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.10  E-value=0.069  Score=35.88  Aligned_cols=35  Identities=14%  Similarity=0.172  Sum_probs=26.6

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|.++|.||+- .|.++|..|++.|.+|.+..|+..
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~   43 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEY   43 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            35566666543 678999999999999999998643

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=92.10  E-value=0.047  Score=33.72  Aligned_cols=30  Identities=33%  Similarity=0.480  Sum_probs=25.8

Q ss_pred             cEEEEcCCHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            4 HAALIGAGTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         4 ~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      ||.+||-|.-|..+|..|.+.|+.+ ++.|.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~   31 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRT   31 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCC
Confidence            7999999999999999999998866 55554

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.96  E-value=0.11  Score=34.48  Aligned_cols=35  Identities=20%  Similarity=0.185  Sum_probs=27.6

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|.++|-||+- .|.++|..|.+.|++|.+..|++.
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~   41 (244)
T d1nffa_           6 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE   41 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            45666667743 678999999999999999998654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=91.89  E-value=0.083  Score=35.12  Aligned_cols=35  Identities=17%  Similarity=0.195  Sum_probs=26.9

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|.++|-||+- .|.++|..|.+.|++|.+..|+..
T Consensus         4 gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~   39 (243)
T d1q7ba_           4 GKIALVTGASRGIGRAIAETLAARGAKVIGTATSEN   39 (243)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            45555556643 678999999999999999998754

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=91.84  E-value=0.048  Score=37.90  Aligned_cols=35  Identities=9%  Similarity=-0.026  Sum_probs=24.8

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|+|||+|.++++....-.....+++++|-.+.
T Consensus        78 pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~  112 (312)
T d1uira_          78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGE  112 (312)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHH
T ss_pred             cceEEEeCCCchHHHHHHHhcCCcceEEEecCCHH
Confidence            57999999999876654322222458999997765

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.77  E-value=0.077  Score=35.87  Aligned_cols=34  Identities=18%  Similarity=0.291  Sum_probs=26.6

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|.++|-||+- .|.++|..|++.|.+|.+..|+.
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45666666643 67899999999999999998764

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.75  E-value=0.1  Score=34.84  Aligned_cols=33  Identities=21%  Similarity=0.297  Sum_probs=25.4

Q ss_pred             CcEEEEcCC-HHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAG-TAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG-~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |.++|.||+ =.|.++|..|++.|.+|.+..|+.
T Consensus        11 KvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1          11 KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            445555663 367889999999999999999864

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.69  E-value=0.092  Score=32.87  Aligned_cols=35  Identities=14%  Similarity=0.127  Sum_probs=28.6

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +.+|+|.|| |..|+.+...++..|.+|....+++.
T Consensus        28 g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~   63 (171)
T d1iz0a2          28 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPE   63 (171)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCEEEEEeccccchhhhhhhhccccccccccccccc
Confidence            357899896 99999998888888999888876543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=91.68  E-value=0.054  Score=33.99  Aligned_cols=32  Identities=22%  Similarity=0.140  Sum_probs=26.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +.+|+.||+|.+-.+  ..|+++|++|+-+|-++
T Consensus        21 ~~rvLd~GCG~G~~a--~~la~~G~~V~gvD~S~   52 (201)
T d1pjza_          21 GARVLVPLCGKSQDM--SWLSGQGYHVVGAELSE   52 (201)
T ss_dssp             TCEEEETTTCCSHHH--HHHHHHCCEEEEEEECH
T ss_pred             CCEEEEecCcCCHHH--HHHHHcCCceEeecccH
Confidence            468999999999654  57788899999999653

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.65  E-value=0.081  Score=35.70  Aligned_cols=34  Identities=15%  Similarity=0.235  Sum_probs=26.4

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|.++|.||+- .|.++|..|++.|.+|.+..|+.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           5 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45566666643 67899999999999999998764

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=91.64  E-value=0.15  Score=34.02  Aligned_cols=35  Identities=20%  Similarity=0.203  Sum_probs=27.4

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +|.|+|.||.- .|.++|..|++.|.+|.+.-|...
T Consensus         5 gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~   40 (254)
T d1sbya1           5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            46777777753 689999999999999888866543

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=91.47  E-value=0.094  Score=36.65  Aligned_cols=31  Identities=16%  Similarity=0.269  Sum_probs=25.7

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeE-EEEee
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLL-VVFER   33 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v-~v~Er   33 (143)
                      |||+|.|| |..|-.++..|.+.|+++ ..+++
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            58999976 999999999999999974 44554

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=0.11  Score=35.05  Aligned_cols=34  Identities=9%  Similarity=-0.050  Sum_probs=28.7

Q ss_pred             CCCeEEcCceEEEeecc---eEEEccCcEEEeeeEeC
Q 038409          110 YNNMLLYSMIESIHENG---SVVIRIQRVIFTDIIQH  143 (143)
Q Consensus       110 ~~~v~~~~~v~~~~~~~---~v~~~dG~~~~aD~vI~  143 (143)
                      ...++++++|++|..++   .|++.||++++||.||+
T Consensus       221 g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~  257 (383)
T d2v5za1         221 GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVIS  257 (383)
T ss_dssp             GGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEE
T ss_pred             CCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEE
Confidence            45789999999998654   58899999999999984

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.31  E-value=0.051  Score=33.98  Aligned_cols=34  Identities=15%  Similarity=0.170  Sum_probs=22.3

Q ss_pred             CcEEEEcCCHHHHHHHHH-H-HHC----CCeEEEEeeCCC
Q 038409            3 CHAALIGAGTAGLGATRE-L-SRE----GYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~-L-~~~----g~~v~v~Er~~~   36 (143)
                      |||+|||||..|...+.. | +..    .-++.+++..+.
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~   40 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEE   40 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcH
Confidence            589999999777555433 2 222    347999986543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.25  E-value=0.12  Score=34.64  Aligned_cols=34  Identities=26%  Similarity=0.244  Sum_probs=26.2

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|.++|.|| +=.|.++|..|.++|++|.+..++.
T Consensus        18 gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          18 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            356666665 4457899999999999999988764

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.15  E-value=0.089  Score=35.16  Aligned_cols=34  Identities=21%  Similarity=0.215  Sum_probs=25.8

Q ss_pred             CcEEEEcCC-HHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            3 CHAALIGAG-TAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         3 ~~v~IIGaG-~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |.++|.||+ =.|.++|..|+++|.+|.+..|+..
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~   41 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA   41 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            455555653 3677999999999999999988643

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=91.13  E-value=0.11  Score=34.94  Aligned_cols=33  Identities=21%  Similarity=0.180  Sum_probs=25.3

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |.++|.|| +=.|.++|..|++.|.+|.+..|+.
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            44555554 4467899999999999999998864

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.10  E-value=0.11  Score=34.69  Aligned_cols=33  Identities=36%  Similarity=0.367  Sum_probs=25.3

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +|.|+|.||+- .|.++|..|+++|++|.+.-++
T Consensus         6 GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~   39 (259)
T d1ja9a_           6 GKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS   39 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            46666666643 6789999999999999886543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.94  E-value=0.098  Score=35.00  Aligned_cols=33  Identities=21%  Similarity=0.193  Sum_probs=25.3

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |.++|.|| +=.|.++|..|++.|.+|.+..|+.
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   45 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            44555555 3477889999999999999998764

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.88  E-value=0.11  Score=34.84  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=24.9

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |.++|.|| +=.|.++|..|+++|.+|.+..|+.
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHA   39 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            44444455 4467899999999999999998863

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=90.87  E-value=0.17  Score=31.50  Aligned_cols=36  Identities=22%  Similarity=0.432  Sum_probs=26.5

Q ss_pred             CC-CcEEEEcCCHHHHHHHHHHHHC-CCeE-EEEeeCCC
Q 038409            1 MS-CHAALIGAGTAGLGATRELSRE-GYLL-VVFERAKG   36 (143)
Q Consensus         1 ~~-~~v~IIGaG~~Gl~~A~~L~~~-g~~v-~v~Er~~~   36 (143)
                      |. .||+|||.|..|-..+.+|++. ++++ .++++++.
T Consensus         1 M~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~   39 (170)
T d1f06a1           1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRAT   39 (170)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSC
T ss_pred             CCcceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccc
Confidence            44 4899999999998888888765 5553 46666554

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=90.68  E-value=0.2  Score=33.28  Aligned_cols=32  Identities=38%  Similarity=0.553  Sum_probs=24.9

Q ss_pred             cEEE-EcCC-HHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            4 HAAL-IGAG-TAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         4 ~v~I-IGaG-~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      ||++ -||. =.|.++|..|+++|.+|.+..|+.
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~   36 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGE   36 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4554 4653 367899999999999999998864

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=90.60  E-value=0.12  Score=34.40  Aligned_cols=33  Identities=21%  Similarity=0.301  Sum_probs=25.4

Q ss_pred             CcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAGT-AGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |.++|.||+- .|.++|..|.+.|.+|.+..|+.
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   40 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHS   40 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4555556533 67899999999999999998864

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=90.51  E-value=0.079  Score=36.06  Aligned_cols=35  Identities=11%  Similarity=0.073  Sum_probs=24.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +++|+|||+|-++++....-....-+++++|=.+.
T Consensus        76 p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~  110 (274)
T d1iy9a_          76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGK  110 (274)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHH
T ss_pred             cceEEecCCCCcHHHHHHHhcCCcceEEEecCCHH
Confidence            47899999999976654321122348999996655

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=90.51  E-value=0.2  Score=31.43  Aligned_cols=34  Identities=29%  Similarity=0.307  Sum_probs=29.9

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|+|+|||.+. -|.-+|..|.++|..|++.....
T Consensus        37 GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          37 GLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             cceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence            68999999876 89999999999999999997643

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=90.51  E-value=0.21  Score=34.88  Aligned_cols=32  Identities=22%  Similarity=0.305  Sum_probs=27.0

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHH-CCCeEEEEee
Q 038409            2 SCHAALIGA-GTAGLGATRELSR-EGYLLVVFER   33 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~-~g~~v~v~Er   33 (143)
                      .|||+|.|| |..|-.++..|.+ .|++|+++++
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~   35 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence            469999876 9999988888864 7999999974

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.46  E-value=0.076  Score=36.60  Aligned_cols=33  Identities=18%  Similarity=0.158  Sum_probs=24.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSRE--GYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~   36 (143)
                      .++|+|||+|-++++.  .+.+.  .-+|+++|-.+.
T Consensus        90 pk~VLiiGgG~G~~~r--~~l~~~~~~~i~~VEIDp~  124 (295)
T d1inla_          90 PKKVLIIGGGDGGTLR--EVLKHDSVEKAILCEVDGL  124 (295)
T ss_dssp             CCEEEEEECTTCHHHH--HHTTSTTCSEEEEEESCHH
T ss_pred             CceEEEecCCchHHHH--HHHhcCCCceEEEecCCHH
Confidence            5799999999997654  44443  347999997655

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.42  E-value=0.18  Score=33.81  Aligned_cols=35  Identities=31%  Similarity=0.412  Sum_probs=26.8

Q ss_pred             CCcEEEEcCCH--HHHHHHHHHHHC-CCeEEEEeeCCC
Q 038409            2 SCHAALIGAGT--AGLGATRELSRE-GYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~--~Gl~~A~~L~~~-g~~v~v~Er~~~   36 (143)
                      +|+|+||=||.  .|+++|..|.+. |.+|.+..|+..
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~   39 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVT   39 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            68999984444  456788888875 899999988644

>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: TDP-vancosaminyltransferase GftD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=90.39  E-value=0.13  Score=35.56  Aligned_cols=30  Identities=20%  Similarity=0.191  Sum_probs=25.1

Q ss_pred             CcEEEEcCCHHH-----HHHHHHHHHCCCeEEEEe
Q 038409            3 CHAALIGAGTAG-----LGATRELSREGYLLVVFE   32 (143)
Q Consensus         3 ~~v~IIGaG~~G-----l~~A~~L~~~g~~v~v~E   32 (143)
                      |||+++..|..|     ++.|..|.++||+|+++=
T Consensus         1 mrIl~~~~gt~Ghv~P~l~lA~~L~~rGh~V~~~t   35 (401)
T d1rrva_           1 MRVLLSVCGTRGDVEIGVALADRLKALGVQTRMCA   35 (401)
T ss_dssp             CEEEEEEESCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CeEEEECCCChhHHHHHHHHHHHHHHCCCEEEEEE
Confidence            689998778766     577889999999999993

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=90.24  E-value=0.19  Score=33.05  Aligned_cols=32  Identities=16%  Similarity=0.170  Sum_probs=26.6

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCC------CeEEEEeeC
Q 038409            3 CHAALIGAGTAGLGATRELSREG------YLLVVFERA   34 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g------~~v~v~Er~   34 (143)
                      |+|+|||=|.-|.+-|+.|+..|      .+|.|==|.
T Consensus        45 KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~   82 (226)
T d1qmga2          45 KQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRK   82 (226)
T ss_dssp             SEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECT
T ss_pred             CEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCC
Confidence            78999999999999999999954      567665443

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.08  E-value=0.13  Score=35.32  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=24.8

Q ss_pred             CcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCC
Q 038409            3 CHAALIGAGT-AGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      |.++|-||+- .|.++|..|+++|.+|.+.++..
T Consensus         8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~   41 (302)
T d1gz6a_           8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGG   41 (302)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCB
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            4455556643 57899999999999999987653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.99  E-value=0.19  Score=31.12  Aligned_cols=33  Identities=21%  Similarity=0.280  Sum_probs=26.4

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFERAK   35 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~   35 (143)
                      .+|+|+|+|..|+.++..++..|. .|.+.++++
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CEEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence            479999999999999888888886 566666543

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.62  E-value=0.24  Score=31.23  Aligned_cols=32  Identities=13%  Similarity=0.147  Sum_probs=27.9

Q ss_pred             CCcEEEEcCC-HHHHHHHHHHHHCCCeEEEEee
Q 038409            2 SCHAALIGAG-TAGLGATRELSREGYLLVVFER   33 (143)
Q Consensus         2 ~~~v~IIGaG-~~Gl~~A~~L~~~g~~v~v~Er   33 (143)
                      +|+|+|||.+ +-|.=+|..|.++|..|++...
T Consensus        29 GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~   61 (171)
T d1edza1          29 GKKCIVINRSEIVGRPLAALLANDGATVYSVDV   61 (171)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECS
T ss_pred             CCEEEEECCccccHHHHHHHHHHCCCEEEEecc
Confidence            6899999966 6799999999999999988864

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.46  E-value=0.12  Score=32.39  Aligned_cols=34  Identities=18%  Similarity=0.142  Sum_probs=21.0

Q ss_pred             CCcEEEEcCCHHHHH--HHHHHHH-CC---CeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLG--ATRELSR-EG---YLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~--~A~~L~~-~g---~~v~v~Er~~   35 (143)
                      .+||+|||||..|..  .+..+++ ..   -++.+++..+
T Consensus         1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e   40 (169)
T d1s6ya1           1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE   40 (169)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG
T ss_pred             CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCc
Confidence            368999999966532  2233333 22   3788888654

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.45  E-value=0.17  Score=37.65  Aligned_cols=32  Identities=22%  Similarity=0.372  Sum_probs=29.1

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeC
Q 038409            3 CHAALIGAGTAGLGATRELSREGY-LLVVFERA   34 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~   34 (143)
                      .+|+|||+|..|.-+|..|...|+ +++|++..
T Consensus        26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d   58 (529)
T d1yova1          26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGN   58 (529)
T ss_dssp             CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            589999999999999999999998 79999853

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.43  E-value=0.1  Score=36.27  Aligned_cols=33  Identities=18%  Similarity=0.261  Sum_probs=24.7

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC-C-CeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSRE-G-YLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~-g-~~v~v~Er~~~   36 (143)
                      +++|+|||+|-++++.  .+.+. . -+++++|-.+.
T Consensus       107 pk~VLIiGgG~G~~~r--ellk~~~v~~v~~VEID~~  141 (312)
T d2b2ca1         107 PKRVLIIGGGDGGILR--EVLKHESVEKVTMCEIDEM  141 (312)
T ss_dssp             CCEEEEESCTTSHHHH--HHTTCTTCCEEEEECSCHH
T ss_pred             CCeEEEeCCCchHHHH--HHHHcCCcceEEEEcccHH
Confidence            5789999999997765  44443 3 48999997655

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.41  E-value=0.1  Score=35.66  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=24.2

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC--CCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSRE--GYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~--g~~v~v~Er~~~   36 (143)
                      +++|+|||+|-++++.  .+.+.  ..+++++|=.+.
T Consensus        79 pk~vLiiGgG~G~~~~--~~l~~~~~~~v~~vEiD~~  113 (285)
T d2o07a1          79 PRKVLIIGGGDGGVLR--EVVKHPSVESVVQCEIDED  113 (285)
T ss_dssp             CCEEEEEECTTSHHHH--HHTTCTTCCEEEEEESCHH
T ss_pred             cCeEEEeCCCchHHHH--HHHHcCCcceeeeccCCHH
Confidence            5789999999997664  44443  458999996544

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=89.03  E-value=0.32  Score=30.67  Aligned_cols=31  Identities=19%  Similarity=0.159  Sum_probs=24.4

Q ss_pred             cEEEEcC-CHHHHHHHHHHHHCCC-------eEEEEeeC
Q 038409            4 HAALIGA-GTAGLGATRELSREGY-------LLVVFERA   34 (143)
Q Consensus         4 ~v~IIGa-G~~Gl~~A~~L~~~g~-------~v~v~Er~   34 (143)
                      ||+|+|| |..|-+++..|++...       .+.+++..
T Consensus        26 kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~   64 (175)
T d7mdha1          26 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSE   64 (175)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCG
T ss_pred             EEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCc
Confidence            7999996 9999999999987532       56666653

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=88.93  E-value=0.37  Score=30.39  Aligned_cols=37  Identities=24%  Similarity=0.265  Sum_probs=27.0

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHC-CCeEEEEeeCCCCc
Q 038409            2 SCHAALIGA-GTAGLGATRELSRE-GYLLVVFERAKGLT   38 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~-g~~v~v~Er~~~~G   38 (143)
                      |+||+|+|| |..|.-...-|.++ .+++..+=.+...|
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG   39 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAG   39 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTT
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCC
Confidence            479999998 99999998888875 45666553333344

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.77  E-value=0.36  Score=30.34  Aligned_cols=34  Identities=15%  Similarity=0.168  Sum_probs=29.9

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGT-AGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +|+|+|||.+. -|.-+|..|.++|..|+++....
T Consensus        39 Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t   73 (170)
T d1a4ia1          39 GRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT   73 (170)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             cceEEEEecCCccchHHHHHHHhccCceEEEeccc
Confidence            68999999865 99999999999999999997643

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.53  E-value=0.13  Score=35.18  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=24.3

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHC-CC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSRE-GY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~-g~-~v~v~Er~~~   36 (143)
                      .++|+|||+|-++++.  .+.+. +. +++++|=.+.
T Consensus        81 pk~VLiiGgG~G~~~r--~~l~~~~~~~i~~VEiD~~  115 (290)
T d1xj5a_          81 PKKVLVIGGGDGGVLR--EVARHASIEQIDMCEIDKM  115 (290)
T ss_dssp             CCEEEEETCSSSHHHH--HHTTCTTCCEEEEEESCHH
T ss_pred             CcceEEecCCchHHHH--HHHhcccceeeEEecCCHH
Confidence            4799999999997665  44544 43 7999996554

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.53  E-value=0.16  Score=34.52  Aligned_cols=34  Identities=18%  Similarity=0.235  Sum_probs=24.1

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      .++|+|||+|.++..... |+...-+++++|-.+.
T Consensus        73 p~~vLiiG~G~G~~~~~~-l~~~~~~v~~VEiD~~  106 (276)
T d1mjfa_          73 PKRVLVIGGGDGGTVREV-LQHDVDEVIMVEIDED  106 (276)
T ss_dssp             CCEEEEEECTTSHHHHHH-TTSCCSEEEEEESCHH
T ss_pred             CceEEEecCCchHHHHHH-HHhCCceEEEecCCHH
Confidence            579999999999766433 3333347999997655

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=88.42  E-value=0.41  Score=31.56  Aligned_cols=32  Identities=25%  Similarity=0.343  Sum_probs=29.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEee
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFER   33 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er   33 (143)
                      +++|+|-|-|--|..+|..|.+.|.++++.+-
T Consensus        39 g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~   70 (230)
T d1leha1          39 GLAVSVQGLGNVAKALCKKLNTEGAKLVVTDV   70 (230)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEeecc
Confidence            57999999999999999999999999998764

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.29  E-value=0.14  Score=32.61  Aligned_cols=34  Identities=12%  Similarity=0.081  Sum_probs=26.3

Q ss_pred             CCCeEEcCceEEEee--c-ce--EEEccCcEEEeeeEeC
Q 038409          110 YNNMLLYSMIESIHE--N-GS--VVIRIQRVIFTDIIQH  143 (143)
Q Consensus       110 ~~~v~~~~~v~~~~~--~-~~--v~~~dG~~~~aD~vI~  143 (143)
                      ...|+++++|++|..  + ++  .++.||++++||.||+
T Consensus       250 G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~  288 (297)
T d2bcgg1         250 GGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIA  288 (297)
T ss_dssp             TCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEE
T ss_pred             CCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEE
Confidence            357899999999853  2 33  3578999999999984

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.22  E-value=0.3  Score=30.66  Aligned_cols=30  Identities=20%  Similarity=0.335  Sum_probs=24.5

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHC-CCeEEEE
Q 038409            2 SCHAALIGA-GTAGLGATRELSRE-GYLLVVF   31 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~-g~~v~v~   31 (143)
                      |++|+|||| |..|...-.-|.++ .+++.-+
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l   32 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITAL   32 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEee
Confidence            579999996 99999999999887 5666544

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.19  E-value=0.19  Score=33.13  Aligned_cols=35  Identities=20%  Similarity=0.235  Sum_probs=26.3

Q ss_pred             CCcEEEEcCCH-HHHHHHHHHH---HCCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGT-AGLGATRELS---REGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~-~Gl~~A~~L~---~~g~~v~v~Er~~~   36 (143)
                      ||+|+|.||.- .|.++|..|.   +.|++|.+..|+..
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~   40 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNRE   40 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTT
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            57898888743 5677777675   57999999988765

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.10  E-value=0.58  Score=28.49  Aligned_cols=37  Identities=16%  Similarity=0.200  Sum_probs=25.2

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHH-CCC---eEEEEeeCCCCc
Q 038409            2 SCHAALIGA-GTAGLGATRELSR-EGY---LLVVFERAKGLT   38 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~-~g~---~v~v~Er~~~~G   38 (143)
                      ||+|+|||| |..|-..-..|.+ ..+   .++.+.++...|
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g   42 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQ   42 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccc
Confidence            479999999 9999877754443 333   566666554443

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.68  E-value=0.15  Score=35.10  Aligned_cols=32  Identities=25%  Similarity=0.472  Sum_probs=25.5

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC----CC-------eEEEEeeC
Q 038409            3 CHAALIGAGTAGLGATRELSRE----GY-------LLVVFERA   34 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~----g~-------~v~v~Er~   34 (143)
                      -+|+|.|||.+|+.+|..|...    |.       ++.++++.
T Consensus        26 ~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~   68 (294)
T d1pj3a1          26 HKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKY   68 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETT
T ss_pred             cEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCC
Confidence            3799999999999998887543    43       58888875

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=87.55  E-value=0.45  Score=31.10  Aligned_cols=24  Identities=17%  Similarity=0.333  Sum_probs=21.7

Q ss_pred             CHHHHHHHHHHHHCCCeEEEEeeC
Q 038409           11 GTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus        11 G~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      |--|.+.|.++.++|++|+++-..
T Consensus        32 Gk~G~aiA~~~~~~Ga~V~li~g~   55 (223)
T d1u7za_          32 GKMGFAIAAAAARRGANVTLVSGP   55 (223)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEECS
T ss_pred             HHHHHHHHHHHHHcCCchhhhhcc
Confidence            778999999999999999999653

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=87.04  E-value=0.11  Score=35.45  Aligned_cols=26  Identities=23%  Similarity=0.244  Sum_probs=22.5

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeE
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLL   28 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v   28 (143)
                      |||+|.|| |..|-.++..|.+.|++|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v   27 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPD   27 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence            57999976 999999999999998743

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.02  E-value=0.17  Score=32.99  Aligned_cols=32  Identities=16%  Similarity=0.050  Sum_probs=26.5

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      +.+|+.+|+|.+-.  +..|++.|++|+-+|-++
T Consensus        46 ~~rvLd~GCG~G~~--a~~LA~~G~~V~gvD~S~   77 (229)
T d2bzga1          46 GLRVFFPLCGKAVE--MKWFADRGHSVVGVEISE   77 (229)
T ss_dssp             SCEEEETTCTTCTH--HHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEeCCCCcHH--HHHHHhCCCcEEEEeCCH
Confidence            45899999999844  568889999999998654

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=87.02  E-value=0.54  Score=31.16  Aligned_cols=32  Identities=28%  Similarity=0.419  Sum_probs=24.9

Q ss_pred             cEEEE-cC-CHHHHHHHHHHHHCCCeEEEEeeCC
Q 038409            4 HAALI-GA-GTAGLGATRELSREGYLLVVFERAK   35 (143)
Q Consensus         4 ~v~II-Ga-G~~Gl~~A~~L~~~g~~v~v~Er~~   35 (143)
                      -|+|| || +=.|.++|..|+++|.+|.+..++.
T Consensus         3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~   36 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRS   36 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            47777 54 4478899999999999999876543

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=87.01  E-value=0.17  Score=33.56  Aligned_cols=31  Identities=26%  Similarity=0.382  Sum_probs=25.1

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeEEEEee
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLLVVFER   33 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er   33 (143)
                      |||+|.|| |..|-..+..|.+.|+.+.+.-+
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v~~~~~   32 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLIALDVH   32 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEEEECTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEECC
Confidence            57999997 99999999999998875555433

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.98  E-value=0.56  Score=30.74  Aligned_cols=32  Identities=31%  Similarity=0.480  Sum_probs=25.0

Q ss_pred             EEEE-cCC-HHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            5 AALI-GAG-TAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         5 v~II-GaG-~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |+|| ||+ =.|.++|..|+++|.+|.+..|+..
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~   36 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSE   36 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            5555 443 3678999999999999999998743

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=86.93  E-value=0.53  Score=28.23  Aligned_cols=31  Identities=23%  Similarity=0.320  Sum_probs=25.8

Q ss_pred             CCcEEEEcCC----HHHHHHHHHHHHCCCeEEEEe
Q 038409            2 SCHAALIGAG----TAGLGATRELSREGYLLVVFE   32 (143)
Q Consensus         2 ~~~v~IIGaG----~~Gl~~A~~L~~~g~~v~v~E   32 (143)
                      .|+|+|||+.    -.|-.....|++.|+++.++=
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~   47 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVN   47 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEE
Confidence            4789999984    477788889999999988874

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.76  E-value=0.17  Score=29.73  Aligned_cols=31  Identities=19%  Similarity=0.179  Sum_probs=24.3

Q ss_pred             CCeEEcCceEEEeecceEEEccCcEEEeeeEeC
Q 038409          111 NNMLLYSMIESIHENGSVVIRIQRVIFTDIIQH  143 (143)
Q Consensus       111 ~~v~~~~~v~~~~~~~~v~~~dG~~~~aD~vI~  143 (143)
                      .+++++.+++++++++ + +.|++++++|.||+
T Consensus        87 V~~~~~~~v~~~~~~~-v-~~~~~~i~~D~vi~  117 (122)
T d1xhca2          87 VKFFLNSELLEANEEG-V-LTNSGFIEGKVKIC  117 (122)
T ss_dssp             EEEECSCCEEEECSSE-E-EETTEEEECSCEEE
T ss_pred             cEEEeCCEEEEEeCCE-E-EeCCCEEECCEEEE
Confidence            4566677888998876 4 67888999999984

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.71  E-value=0.22  Score=32.89  Aligned_cols=35  Identities=26%  Similarity=0.418  Sum_probs=22.6

Q ss_pred             CC-CcEEEEcCCH-HHHHHHHHHHHCCC--eEEEEeeCC
Q 038409            1 MS-CHAALIGAGT-AGLGATRELSREGY--LLVVFERAK   35 (143)
Q Consensus         1 ~~-~~v~IIGaG~-~Gl~~A~~L~~~g~--~v~v~Er~~   35 (143)
                      |. |.|+|.||.- .|.++|..|+++|.  .|.+.-|+.
T Consensus         1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~   39 (250)
T d1yo6a1           1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDV   39 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSG
T ss_pred             CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCH
Confidence            55 4555556533 56788899999986  455555543

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=86.39  E-value=0.2  Score=34.65  Aligned_cols=32  Identities=19%  Similarity=0.341  Sum_probs=25.2

Q ss_pred             CcEEEEcCCHHHHHHHHHHHHC----CC-------eEEEEeeC
Q 038409            3 CHAALIGAGTAGLGATRELSRE----GY-------LLVVFERA   34 (143)
Q Consensus         3 ~~v~IIGaG~~Gl~~A~~L~~~----g~-------~v~v~Er~   34 (143)
                      .+|+|.|||.+|+.+|..|.+.    |.       ++.++++.
T Consensus        26 ~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~   68 (308)
T d1o0sa1          26 EKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDID   68 (308)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETT
T ss_pred             cEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCC
Confidence            3799999999999988887643    42       58888875

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.05  E-value=0.47  Score=27.57  Aligned_cols=33  Identities=12%  Similarity=0.015  Sum_probs=24.5

Q ss_pred             CCeEEcCceEEEeecc---eEEEccC---cEEEeeeEeC
Q 038409          111 NNMLLYSMIESIHENG---SVVIRIQ---RVIFTDIIQH  143 (143)
Q Consensus       111 ~~v~~~~~v~~~~~~~---~v~~~dG---~~~~aD~vI~  143 (143)
                      ..++++.++++++.++   .+++.++   +++++|.||+
T Consensus        78 v~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlv  116 (119)
T d3lada2          78 LKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIV  116 (119)
T ss_dssp             EEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEE
T ss_pred             ceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEE
Confidence            4577888899987543   5777766   5789999974

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=86.00  E-value=0.58  Score=28.59  Aligned_cols=37  Identities=19%  Similarity=0.302  Sum_probs=26.5

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCC---eEEEEeeCCCCc
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGY---LLVVFERAKGLT   38 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~---~v~v~Er~~~~G   38 (143)
                      +.+|+|||| |..|...-.-|.++.+   ++..+-.+...|
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G   41 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAG   41 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccc
Confidence            458999999 9999999888887754   344444333344

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=85.91  E-value=0.44  Score=31.30  Aligned_cols=33  Identities=36%  Similarity=0.469  Sum_probs=24.3

Q ss_pred             CcEEEE-cCCH-HHHHHHHHHHHCCCe-------EEEEeeCC
Q 038409            3 CHAALI-GAGT-AGLGATRELSREGYL-------LVVFERAK   35 (143)
Q Consensus         3 ~~v~II-GaG~-~Gl~~A~~L~~~g~~-------v~v~Er~~   35 (143)
                      |+|++| ||+- .|.++|..|+++|++       +.++.|+.
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~   42 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA   42 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCH
Confidence            676655 6533 678899999999987       77777754

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=85.37  E-value=0.66  Score=30.70  Aligned_cols=31  Identities=19%  Similarity=0.236  Sum_probs=28.0

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEe
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFE   32 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~E   32 (143)
                      +++|+|=|-|.-|..+|..|.+.|.+|+-+.
T Consensus        31 g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1          31 GKTVAIQGMGNVGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence            5799999999999999999999999987554

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.30  E-value=0.75  Score=30.30  Aligned_cols=35  Identities=20%  Similarity=0.467  Sum_probs=25.3

Q ss_pred             CCcEEEEcCCH--HHHHHHHHHHH---CCCeEEEEeeCCC
Q 038409            2 SCHAALIGAGT--AGLGATRELSR---EGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~--~Gl~~A~~L~~---~g~~v~v~Er~~~   36 (143)
                      ..||+||=||.  .|.++|..|++   +|++|.+..|+..
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~   44 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSES   44 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHH
Confidence            35788884444  46678888876   6999999987643

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=85.13  E-value=0.58  Score=30.85  Aligned_cols=29  Identities=21%  Similarity=0.414  Sum_probs=24.2

Q ss_pred             EEEEcC-CHHHHHHHHHHHHCCC-eEEEEee
Q 038409            5 AALIGA-GTAGLGATRELSREGY-LLVVFER   33 (143)
Q Consensus         5 v~IIGa-G~~Gl~~A~~L~~~g~-~v~v~Er   33 (143)
                      |+|.|| |..|-..+..|.++|+ +|+++++
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~   32 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDN   32 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEEC
Confidence            567655 9999999999999996 7999873

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=85.04  E-value=0.65  Score=29.19  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=26.3

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHC-CCeEEEEeeCCCCc
Q 038409            3 CHAALIGA-GTAGLGATRELSRE-GYLLVVFERAKGLT   38 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~-g~~v~v~Er~~~~G   38 (143)
                      .||+|||| |..|.....-|.++ .+++..+=.+...|
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG   43 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAG   43 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTT
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCC
Confidence            48999998 99999999999876 44665553333344

>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Pyrococcus abyssi [TaxId: 29292]

Probab=84.51  E-value=0.7  Score=32.05  Aligned_cols=30  Identities=27%  Similarity=0.385  Sum_probs=22.3

Q ss_pred             CcEEEEcC--------CHHH--HHHHHHHHHCCCeEEEEe
Q 038409            3 CHAALIGA--------GTAG--LGATRELSREGYLLVVFE   32 (143)
Q Consensus         3 ~~v~IIGa--------G~~G--l~~A~~L~~~g~~v~v~E   32 (143)
                      |||++|+.        |++=  ...|.+|++.|++|+|+=
T Consensus         1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvt   40 (437)
T d2bisa1           1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFT   40 (437)
T ss_dssp             CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence            68999883        4422  346788999999999983

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.96  E-value=0.51  Score=31.80  Aligned_cols=30  Identities=17%  Similarity=0.122  Sum_probs=21.4

Q ss_pred             CCcEEEEcCCH--HHHHHHHHHHHCCCeEEEE
Q 038409            2 SCHAALIGAGT--AGLGATRELSREGYLLVVF   31 (143)
Q Consensus         2 ~~~v~IIGaG~--~Gl~~A~~L~~~g~~v~v~   31 (143)
                      .|||++|=||.  .|.++|..|++.|.++.++
T Consensus         1 ~kkVvlITGassGIG~a~A~~la~~Ga~v~~v   32 (285)
T d1jtva_           1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKV   32 (285)
T ss_dssp             CCEEEEESCCSSHHHHHHHHHHHTCTTCCEEE
T ss_pred             CCCEEEEccCCCHHHHHHHHHHHHCCCCeEEE
Confidence            37888883333  4568888899999876554

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=83.75  E-value=0.3  Score=32.33  Aligned_cols=32  Identities=19%  Similarity=0.310  Sum_probs=25.8

Q ss_pred             EEEEcCCH-HHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            5 AALIGAGT-AGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         5 v~IIGaG~-~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      ++|-||+- .|.++|..|+++|++|.+..|+..
T Consensus         3 AlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~   35 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAGHTVACHDESFK   35 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTTCEEEECCGGGG
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            55667654 789999999999999999887543

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=82.82  E-value=0.17  Score=30.74  Aligned_cols=32  Identities=16%  Similarity=0.084  Sum_probs=22.8

Q ss_pred             EEEEcCCHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            5 AALIGAGTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         5 v~IIGaG~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |-+||+|.-|...|..|.+.+....|+.|+..
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~   33 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSID   33 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHH
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            45899999999999998776555578887644

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.76  E-value=0.48  Score=29.34  Aligned_cols=33  Identities=15%  Similarity=0.119  Sum_probs=26.5

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      +.+|+|.|| |..|+.++..++..|.++.+.-++
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~   59 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGS   59 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CCEEEEECCCCCcccccchhhccccccceeeecc
Confidence            357888886 999999888888889988877654

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=82.48  E-value=0.49  Score=29.22  Aligned_cols=35  Identities=20%  Similarity=0.044  Sum_probs=26.3

Q ss_pred             CCcEEEEcC-CHHHHHHHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIGA-GTAGLGATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGa-G~~Gl~~A~~L~~~g~~v~v~Er~~~   36 (143)
                      +.+|+|.|| |..|+.+...++..|.+|....+++.
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~   64 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ   64 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred             CCEEEEEccccccchHHHHHHHHhCCeEeecccchH
Confidence            357889855 44777777777777999999987654

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.71  E-value=1.2  Score=30.30  Aligned_cols=31  Identities=32%  Similarity=0.311  Sum_probs=27.6

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCCeEEEEe
Q 038409            2 SCHAALIGAGTAGLGATRELSREGYLLVVFE   32 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~~v~v~E   32 (143)
                      +++|+|=|-|--|..+|..|.+.|.+|+-+-
T Consensus        36 gktvaIqGfGnVG~~~A~~L~e~Gakvv~vs   66 (293)
T d1hwxa1          36 DKTFAVQGFGNVGLHSMRYLHRFGAKCVAVG   66 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            4789999999999999999999999876554

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=81.67  E-value=1.5  Score=26.20  Aligned_cols=32  Identities=22%  Similarity=0.194  Sum_probs=25.7

Q ss_pred             CCcEEEEcCCH----HHHHHHHHHHHCCCeEEEEee
Q 038409            2 SCHAALIGAGT----AGLGATRELSREGYLLVVFER   33 (143)
Q Consensus         2 ~~~v~IIGaG~----~Gl~~A~~L~~~g~~v~v~Er   33 (143)
                      .++|+|||+..    -|-..+..|.+.|+++..+-.
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP   54 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNP   54 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECT
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECC
Confidence            46899999864    677888899999998776643

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.41  E-value=0.88  Score=30.32  Aligned_cols=35  Identities=14%  Similarity=0.170  Sum_probs=24.7

Q ss_pred             CCcEEEEc-CCHHHHH----HHHHHHHCCCeEEEEeeCCC
Q 038409            2 SCHAALIG-AGTAGLG----ATRELSREGYLLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIG-aG~~Gl~----~A~~L~~~g~~v~v~Er~~~   36 (143)
                      |++|+|-| ||.+=.+    .|.+|++.|.+|.+++-.+.
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ   41 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK   41 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            46777776 4544433    46667788999999997654

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=80.84  E-value=0.74  Score=28.63  Aligned_cols=34  Identities=18%  Similarity=0.110  Sum_probs=20.7

Q ss_pred             CCcEEEEcCCHHHHH---HHHHHHHCC---CeEEEEeeCC
Q 038409            2 SCHAALIGAGTAGLG---ATRELSREG---YLLVVFERAK   35 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~---~A~~L~~~g---~~v~v~Er~~   35 (143)
                      ..||+|||||..|..   .+.......   -++.+++..+
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~   42 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK   42 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCH
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCCh
Confidence            358999999987643   222222222   3788888643

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.79  E-value=0.99  Score=30.57  Aligned_cols=33  Identities=15%  Similarity=0.123  Sum_probs=24.4

Q ss_pred             CCcEEEEcCCHHHHHHHHHHHHCCC-eEEEEeeCCC
Q 038409            2 SCHAALIGAGTAGLGATRELSREGY-LLVVFERAKG   36 (143)
Q Consensus         2 ~~~v~IIGaG~~Gl~~A~~L~~~g~-~v~v~Er~~~   36 (143)
                      +++|+-||+|.+.++  ..+++.|. +|+.+|.++.
T Consensus        36 ~~~VLDiGcG~G~ls--l~aa~~Ga~~V~aid~s~~   69 (311)
T d2fyta1          36 DKVVLDVGCGTGILS--MFAAKAGAKKVLGVDQSEI   69 (311)
T ss_dssp             TCEEEEETCTTSHHH--HHHHHTTCSEEEEEESSTH
T ss_pred             cCEEEEECCCCCHHH--HHHHHcCCCEEEEEeCHHH
Confidence            467999999977654  45667775 7999987654

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=80.53  E-value=1.6  Score=28.51  Aligned_cols=30  Identities=20%  Similarity=0.281  Sum_probs=22.1

Q ss_pred             EEEE-cC-CHHHHHHHHHHHHCCCeEEEEeeC
Q 038409            5 AALI-GA-GTAGLGATRELSREGYLLVVFERA   34 (143)
Q Consensus         5 v~II-Ga-G~~Gl~~A~~L~~~g~~v~v~Er~   34 (143)
                      |++| || +=.|.++|..|++.|++|.+..++
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~   34 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYAR   34 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5555 44 336788999999999999886543

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.52  E-value=1.5  Score=25.85  Aligned_cols=27  Identities=26%  Similarity=0.409  Sum_probs=23.1

Q ss_pred             CcEEEEcC-CHHHHHHHHHHHHCCCeEE
Q 038409            3 CHAALIGA-GTAGLGATRELSREGYLLV   29 (143)
Q Consensus         3 ~~v~IIGa-G~~Gl~~A~~L~~~g~~v~   29 (143)
                      |||+|+|+ |--|-+.+..+.+.++++.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~   28 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELV   28 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEE
Confidence            57999996 9999999888888888654