Citrus Sinensis ID: 038430
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 677 | 2.2.26 [Sep-21-2011] | |||||||
| Q7XA42 | 979 | Putative disease resistan | N/A | no | 0.800 | 0.553 | 0.349 | 1e-78 | |
| Q7XA39 | 988 | Putative disease resistan | N/A | no | 0.890 | 0.610 | 0.324 | 4e-76 | |
| Q7XA40 | 992 | Putative disease resistan | N/A | no | 0.810 | 0.553 | 0.332 | 3e-75 | |
| Q7XBQ9 | 970 | Disease resistance protei | N/A | no | 0.856 | 0.597 | 0.327 | 4e-71 | |
| Q9LRR5 | 1424 | Putative disease resistan | yes | no | 0.914 | 0.434 | 0.297 | 4e-62 | |
| Q9LRR4 | 1054 | Putative disease resistan | no | no | 0.828 | 0.532 | 0.273 | 3e-57 | |
| Q38834 | 852 | Disease resistance RPP13- | no | no | 0.688 | 0.546 | 0.287 | 3e-45 | |
| Q39214 | 926 | Disease resistance protei | no | no | 0.580 | 0.424 | 0.290 | 1e-38 | |
| O81825 | 919 | Probable disease resistan | no | no | 0.646 | 0.476 | 0.278 | 4e-31 | |
| Q8W3K3 | 910 | Putative disease resistan | no | no | 0.617 | 0.459 | 0.272 | 2e-30 |
| >sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 294 bits (753), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 214/613 (34%), Positives = 307/613 (50%), Gaps = 71/613 (11%)
Query: 1 MWVCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDY 60
+W+C+SD F E + AI+E + + S + L + + GK+ FL+L+DVW+ D
Sbjct: 209 IWICISDDFNEKRLIKAIVESIEGKSLSDMDLAPLQKKLQELLNGKRYFLVLDDVWNEDQ 268
Query: 61 NKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIEQLTEEECWSLFKRLAFFGC 120
+KWA L G G+ +L TTR E V +MG+ + L+ E+CW LF + A FG
Sbjct: 269 HKWANLRAVLKVGASGAFVLTTTRLEKVGSIMGTLQPYELSNLSPEDCWFLFMQRA-FGH 327
Query: 121 SFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEEIGKGL 180
E L IG++I +KC G+P+AAK +G +LR K ++W+ + DS +W + +
Sbjct: 328 QEEINPNLMAIGKEIVKKCGGVPLAAKTLGGILRFKREEREWEHVRDSPIWNLPQDESSI 387
Query: 181 LTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEKEMTG 240
L L LSY+ L + +++ F YCAVFPKD M KE LI+ WMA G+L ++ E E G
Sbjct: 388 LPALRLSYHHLPLD--LRQCFVYCAVFPKDTKMAKENLIAFWMAHGFLLSKGNLELEDVG 445
Query: 241 EECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLEINSTKESVINA 300
E +N L RSFFQE E KMHD++HD A + S +S+ INA
Sbjct: 446 NEVWNELYLRSFFQEIEVESGKTYF--KMHDLIHDLATSLFSANT-----SSSNIREINA 498
Query: 301 -FGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYL 359
+ G + +G + P + LR L + NS+L+++P ++G L+HL+YL
Sbjct: 499 NYDGYMMSIGFAEVVSSYSPSLLQKFVSLRVLNLR-----NSNLNQLPSSIGDLVHLRYL 553
Query: 360 NLS-ELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRS-LLNGLTCSLKYM 417
+LS I LPK LC+L NLQ LD+ C +L LP KL ++R+ LL+G CSL
Sbjct: 554 DLSGNFRIRNLPKRLCKLQNLQTLDLHYCDSLSCLPKQTSKLGSLRNLLLDG--CSLTST 611
Query: 418 PIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLE 477
P I LT L++L F +G +L LKN L I L V +A+
Sbjct: 612 PPRIGLLTCLKSLSCFVIG----KRKGHQLGELKNLNLYGSISITKLDRVKKDTDAKEAN 667
Query: 478 LKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEER 537
L NL L L W D DG
Sbjct: 668 LSAKANLHSLCL----------SW--------------DLDG------------------ 685
Query: 538 RRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWL--TSLTNLSDLKLVFCENCEQLP 595
K+ D ++LEAL+P N++ L I GG LP W+ + L N+ +++ CENC LP
Sbjct: 686 --KHRYDSEVLEALKPHSNLKYLEINGFGGIRLPDWMNQSVLKNVVSIRIRGCENCSCLP 743
Query: 596 PLGKLP-LEKLEL 607
P G+LP LE LEL
Sbjct: 744 PFGELPCLESLEL 756
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (732), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 226/696 (32%), Positives = 333/696 (47%), Gaps = 93/696 (13%)
Query: 1 MWVCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDY 60
+WVCVSD F+E + II + S+ + + S + + GK+ L+L+DVW+ D
Sbjct: 211 IWVCVSDDFDEKRLIKTIIGNIERSSPHVEDLASFQKKLQELLNGKRYLLVLDDVWNDDL 270
Query: 61 NKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIEQLTEEECWSLFKRLAFFGC 120
KWA L G G+ IL TTR E V +MG+ + L+ + LF + A FG
Sbjct: 271 EKWAKLRAVLTVGARGASILATTRLEKVGSIMGTLQPYHLSNLSPHDSLLLFMQRA-FGQ 329
Query: 121 SFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEEIGKGL 180
E L IG++I +KC G+P+AAK +G LLR K +W+ + D+E+W + +
Sbjct: 330 QKEANPNLVAIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDNEIWSLPQDESSI 389
Query: 181 LTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEKEMTG 240
L L LSY+ L + +++ F+YCAVFPKD M KE LI+LWMA G+L ++ E E G
Sbjct: 390 LPALRLSYHHLPLD--LRQCFAYCAVFPKDTKMIKENLITLWMAHGFLLSKGNLELEDVG 447
Query: 241 EECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQ--FVSSKECLWLEINSTKESVI 298
E +N L RSFFQE E + K+HD++HD A F +S C + +E +
Sbjct: 448 NEVWNELYLRSFFQEIEAKSGNTYF--KIHDLIHDLATSLFSASASC-----GNIREINV 500
Query: 299 NAFGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKY 358
+ V +G + P + LR L + S L+++P ++G L+HL+Y
Sbjct: 501 KDYKHTVS-IGFAAVVSSYSPSLLKKFVSLRVLNLS-----YSKLEQLPSSIGDLLHLRY 554
Query: 359 LNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMP 418
L+LS + LP+ LC+L NLQ LD+ C +L LP KL ++R L+ C L P
Sbjct: 555 LDLSCNNFRSLPERLCKLQNLQTLDVHNCYSLNCLPKQTSKLSSLRHLVVD-GCPLTSTP 613
Query: 419 IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLEL 478
I LT L+TL F VG +L LKN L I L V + +AE L
Sbjct: 614 PRIGLLTCLKTLGFFIVG----SKKGYQLGELKNLNLCGSISITHLERVKNDTDAEA-NL 668
Query: 479 KNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERR 538
NL L + W+++ N
Sbjct: 669 SAKANLQSLSM----------SWDNDGPN------------------------------- 687
Query: 539 RKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWL--TSLTNLSDLKLVFCENCEQLPP 596
R K+ ++LEAL+P N++ L I+ GG P W+ + L + +++ C+NC LPP
Sbjct: 688 RYESKEVKVLEALKPHPNLKYLEIIAFGGFRFPSWINHSVLEKVISVRIKSCKNCLCLPP 747
Query: 597 LGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEI----- 650
G+LP LE LEL N E+E E+D S S+ +FP +K L I
Sbjct: 748 FGELPCLENLEL---------QNGSAEVEYVEEDDVHSRFSTR-RSFPSLKKLRIWFFRS 797
Query: 651 -KEL--EEGNYRITRKENISII-------PRLSSLR 676
K L EEG + E ++I+ P LSS++
Sbjct: 798 LKGLMKEEGEEKFPMLEEMAILYCPLFVFPTLSSVK 833
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 283 bits (725), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 205/616 (33%), Positives = 307/616 (49%), Gaps = 67/616 (10%)
Query: 1 MWVCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDY 60
+WVCVSD F+E + AI+E + + + L + + GK+ FL+L+DVW+ D
Sbjct: 209 IWVCVSDDFDEKRLIKAIVESIEGKSLGDMDLAPLQKKLQELLNGKRYFLVLDDVWNEDQ 268
Query: 61 NKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIEQLTEEECWSLFKRLAFFGC 120
KW L G G+ IL+TTR E + +MG+ + + L++E+CW LFK+ AF
Sbjct: 269 EKWDNLRAVLKIGASGASILITTRLEKIGSIMGTLQLYQLSNLSQEDCWLLFKQRAFCHQ 328
Query: 121 SFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEEIGKGL 180
+ E +L IG++I +KC G+P+AAK +G LLR K +W+ + DSE+W + +
Sbjct: 329 T-ETSPKLMEIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDSEIWNLPQDENSV 387
Query: 181 LTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEKEMTG 240
L L LSY+ L + +++ F+YCAVFPKD + KE LI+LWMA +L ++ E E G
Sbjct: 388 LPALRLSYHHLPLD--LRQCFAYCAVFPKDTKIEKEYLIALWMAHSFLLSKGNMELEDVG 445
Query: 241 EECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLEINSTK----ES 296
E +N L RSFFQE E KMHD++HD A + S I E
Sbjct: 446 NEVWNELYLRSFFQEIEVKSGKTYF--KMHDLIHDLATSMFSASASSRSIRQINVKDDED 503
Query: 297 VINAFGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHL 356
++ + + F S S R +L + + S NS +++P +VG L+HL
Sbjct: 504 MMFIVTNYKDMMSIGFSEVVS-SYSPSLFKRFVSLRVLNLS--NSEFEQLPSSVGDLVHL 560
Query: 357 KYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKY 416
+YL+LS I LPK LC+L NLQ LD+ C++L LP KL ++R+L+ C L
Sbjct: 561 RYLDLSGNKICSLPKRLCKLQNLQTLDLYNCQSLSCLPKQTSKLCSLRNLVLD-HCPLTS 619
Query: 417 MPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQL--IRKCGIEGLSNVSHLDEAE 474
MP I LT L+TL F VG K +QL +R + G +++HL+
Sbjct: 620 MPPRIGLLTCLKTLGYFVVGER------------KGYQLGELRNLNLRGAISITHLE--- 664
Query: 475 RLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEY 534
R D E +E N + + +
Sbjct: 665 ---------------------RVKNDMEAKEAN-------------LSAKANLHSLSMSW 690
Query: 535 EERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWL--TSLTNLSDLKLVFCENCE 592
+ R ++ ++LEAL+P N++ L I+ G LP W+ + L N+ + + CENC
Sbjct: 691 DRPNRYESEEVKVLEALKPHPNLKYLEIIDFCGFCLPDWMNHSVLKNVVSILISGCENCS 750
Query: 593 QLPPLGKLP-LEKLEL 607
LPP G+LP LE LEL
Sbjct: 751 CLPPFGELPCLESLEL 766
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (689), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 215/657 (32%), Positives = 316/657 (48%), Gaps = 77/657 (11%)
Query: 1 MWVCVSDTFEEISVANAIIEGL-GESTSSLSEFQSLMSHIHRSIEGKKNFLILNDVWDGD 59
+W+CVS+ F+E + AI+E + G + L + + GK+ L+L+DVW+ D
Sbjct: 209 IWICVSEDFDEKRLIKAIVESIEGRPLLGEMDLAPLQKKLQELLNGKRYLLVLDDVWNED 268
Query: 60 YNKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIEQLTEEECWSLFKRLAFFG 119
KWA L G G+ +L TTR E V +MG+ + L++E+CW LF + AF G
Sbjct: 269 QQKWANLRAVLKVGASGASVLTTTRLEKVGSIMGTLQPYELSNLSQEDCWLLFMQRAF-G 327
Query: 120 CSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEEIGKG 179
E L IG++I +K G+P+AAK +G +L K + W+ + DS +W +
Sbjct: 328 HQEEINPNLVAIGKEIVKKSGGVPLAAKTLGGILCFKREERAWEHVRDSPIWNLPQDESS 387
Query: 180 LLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEKEMT 239
+L L LSY+ L + +K+ F+YCAVFPKD M KE+LISLWMA G+L ++ E E
Sbjct: 388 ILPALRLSYHQLPLD--LKQCFAYCAVFPKDAKMEKEKLISLWMAHGFLLSKGNMELEDV 445
Query: 240 GEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLEINSTKESVIN 299
G+E + L RSFFQE E D KMHD++HD A + S N++ ++
Sbjct: 446 GDEVWKELYLRSFFQEIEVKDGKTYF--KMHDLIHDLATSLFSA-------NTSSSNIRE 496
Query: 300 AFGGKVRHLGLKFKGGASFPMSIHGLNR---LRTLLIDDESPPNSSLDKIPENVGKLMHL 356
H+ F ++ L + LR L + D S+ +K+P ++G L+HL
Sbjct: 497 INKHSYTHMMSIGFAEVVFFYTLPPLEKFISLRVLNLGD-----STFNKLPSSIGDLVHL 551
Query: 357 KYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKY 416
+YLNL + LPK LC+L NLQ LD++ C L LP KL ++R+LL + SL
Sbjct: 552 RYLNLYGSGMRSLPKQLCKLQNLQTLDLQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTC 611
Query: 417 MPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERL 476
MP I LT L+TL +F VG RK G + L E L
Sbjct: 612 MPPRIGSLTCLKTLGQFVVG--------------------RKKGYQ-------LGELGNL 644
Query: 477 ELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEE 536
L + HL +R D + +E N G + G + + E
Sbjct: 645 NLYGSIKISHL-------ERVKNDKDAKEANLSAKGNLHSLSMSWNN-FGPHIYESE--- 693
Query: 537 RRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWL--TSLTNLSDLKLVFCENCEQL 594
+ ++LEAL+P N+ L I G LP+W+ + L N+ + + NC L
Sbjct: 694 -------EVKVLEALKPHSNLTSLKIYGFRGIHLPEWMNHSVLKNIVSILISNFRNCSCL 746
Query: 595 PPLGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEI 650
PP G LP LE LEL H S E++E E D S + FP ++ L+I
Sbjct: 747 PPFGDLPCLESLEL-HWGSADV---EYVE----EVDIDVHSGFPTRIRFPSLRKLDI 795
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (611), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 212/712 (29%), Positives = 319/712 (44%), Gaps = 93/712 (13%)
Query: 1 MWVCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDY 60
MW+ F +V A+++ + S + + SL + +++ GK+ L+L+D W
Sbjct: 227 MWISAGINFNVFTVTKAVLQDITSSAVNTEDLPSLQIQLKKTLSGKRFLLVLDDFWSESD 286
Query: 61 NKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIEQLTEEECWSLFKRLAFFGC 120
++W F + GSKI++TTR+E+V+ + + I ++ +T EECW L R AF
Sbjct: 287 SEWESFQVAFTDAEEGSKIVLTTRSEIVSTVAKAEKIYQMKLMTNEECWELISRFAFGNI 346
Query: 121 SFEDC-ERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEEIGKG 179
S + LE IG++IA +CKGLP+AA+ I + LRSK DW + S+ + +
Sbjct: 347 SVGSINQELEGIGKRIAEQCKGLPLAARAIASHLRSKPNPDDWYAV--SKNFSS--YTNS 402
Query: 180 LLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEK-EM 238
+L L LSY+ L +KR F+ C++FPK + +EEL+ LWMA L + E
Sbjct: 403 ILPVLKLSYDSLPPQ--LKRCFALCSIFPKGHVFDREELVLLWMAIDLLYQPRSSRRLED 460
Query: 239 TGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLEINSTKESVI 298
G + L A+SFFQ D + S MHD+++D A+ VS C LE ++ E
Sbjct: 461 IGNDYLGDLVAQSFFQRL----DITMTSFVMHDLMNDLAKAVSGDFCFRLEDDNIPE--- 513
Query: 299 NAFGGKVRHLGL-KFKGGASFPM-SIHGLNRLRTLLIDDESPPNSSLD------------ 344
RH + + AS SI G LRT+L + SL
Sbjct: 514 --IPSTTRHFSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNA 571
Query: 345 ---------------KIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRN 389
+P+++ L L+YL+LS I+ LP+ +C L NLQ L + CR+
Sbjct: 572 LSGLRILSLSHYQITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLSNCRD 631
Query: 390 LRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLEC 449
L LP I +L N+R LL+ + L MP GI KL SL+ L F +G G L
Sbjct: 632 LTSLPKSIAELINLR-LLDLVGTPLVEMPPGIKKLRSLQKLSNFVIGRLSGAG----LHE 686
Query: 450 LKNFQLIR-KCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENE 508
LK +R I L NV+ EA+ LK L L L + V
Sbjct: 687 LKELSHLRGTLRISELQNVAFASEAKDAGLKRKPFLDGLILKWTV--------------- 731
Query: 509 DEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGN 568
KG V G + +++L L+P +++ I G
Sbjct: 732 ----------------KGSGFVPGSFNALACDQ---KEVLRMLEPHPHLKTFCIESYQGG 772
Query: 569 ILPKWL--TSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFLEIE- 624
PKWL +S ++ + L C C LPP+G+LP L+ L + +++VG +F E
Sbjct: 773 AFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGEN 832
Query: 625 ESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLR 676
S P S P+ ELE+G + +K II R SLR
Sbjct: 833 NSRGVPFQSLQILKFYGMPRWDEWICPELEDGIFPCLQK---LIIQRCPSLR 881
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (569), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 181/663 (27%), Positives = 303/663 (45%), Gaps = 102/663 (15%)
Query: 1 MWVCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIEGK--KNFLILNDVWDG 58
+W VS+ F+ + + E + ++ L + + G L+L+D+W+
Sbjct: 230 VWAHVSEEFDVFKITKKVYESVTSRPCEFTDLDVLQVKLKERLTGTGLPFLLVLDDLWNE 289
Query: 59 DYNKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIEQLTEEECWSLFKRLAFF 118
++ W H GS+ILVTTR++ VA +M + ++ ++ L++ +CWSLF + F
Sbjct: 290 NFADWDLLRQPFIHAAQGSQILVTTRSQRVASIMCAVHVHNLQPLSDGDCWSLFMKTVF- 348
Query: 119 GCSFEDC--ERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEEI 176
+ E C + + ++I KC+GLP+A K +G +LR + + +W+R+L S +W
Sbjct: 349 -GNQEPCLNREIGDLAERIVHKCRGLPLAVKTLGGVLRFEGKVIEWERVLSSRIWDLPAD 407
Query: 177 GKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEK 236
LL L +SY L ++ +KR F+YC++FPK + K++++ LWMA+G+L +
Sbjct: 408 KSNLLPVLRVSYYYLPAH--LKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKN 465
Query: 237 -EMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLEINSTKE 295
E G E F+ L +RS Q+ + MHD +++ AQF S E +S E
Sbjct: 466 LEELGNEYFSELESRSLLQKTKTR-------YIMHDFINELAQFASG------EFSSKFE 512
Query: 296 SVIN-AFGGKVRHLGLKFKGGASFPMSIHGLNR---LRTLLIDDESPPNSS----LDKI- 346
+ R+L + + PM L LRT L S NSS LD++
Sbjct: 513 DGCKLQVSERTRYLSY-LRDNYAEPMEFEALREVKFLRTFL--PLSLTNSSRSCCLDQMV 569
Query: 347 -------------------------PENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381
P+ + H ++L+LS +E+LPK+LC +YNLQ
Sbjct: 570 SEKLLPTLTRLRVLSLSHYKIARLPPDFFKNISHARFLDLSRTELEKLPKSLCYMYNLQT 629
Query: 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDG 441
L + C +L+ELPT I L N+R L+ + L+ MP +L SL+TL F V DG
Sbjct: 630 LLLSYCSSLKELPTDISNLINLR-YLDLIGTKLRQMPRRFGRLKSLQTLTTFFVSAS-DG 687
Query: 442 GSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHL-YLWFEVVDREDED 500
L L + K I L V + +A L + ++L + ++W
Sbjct: 688 SRISELGGLHDLH--GKLKIVELQRVVDVADAAEANLNSKKHLREIDFVW---------- 735
Query: 501 WEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKL 560
G + R +NE ++ E L+P ++EKL
Sbjct: 736 -----------------------RTGSSSSENNTNPHRTQNEA--EVFEKLRPHRHIEKL 770
Query: 561 WILFNGGNILPKWLT--SLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVG 617
I G P WL+ S + + ++L C+ C LP LG+LP L++L + + ++ +G
Sbjct: 771 AIERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIG 830
Query: 618 NEF 620
+F
Sbjct: 831 RKF 833
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 184 bits (466), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 151/526 (28%), Positives = 260/526 (49%), Gaps = 60/526 (11%)
Query: 1 MWVCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDY 60
+WV VS TF E + +I+ LG+++ + +L+ I + + GK+ ++++DVWD +
Sbjct: 216 IWVSVSQTFTEEQIMRSILRNLGDASVG-DDIGTLLRKIQQYLLGKRYLIVMDDVWDKNL 274
Query: 61 NKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTN--IIFIEQLTEEECWSLFKRLAFF 118
+ W + L G G ++VTTR+E VA+ + + + E L+ + W LF +AF
Sbjct: 275 SWWDKIYQGLPRG-QGGSVIVTTRSESVAKRVQARDDKTHRPELLSPDNSWLLFCNVAF- 332
Query: 119 GCSFEDCER--LEPIGQKIARKCKGLPIAAKVIGNLLRSKSTI-KDWQRILDSEMWKAEE 175
+ CER LE +G++I KCKGLP+ K +G LL K + +W+RI +E ++ E
Sbjct: 333 AANDGTCERPELEDVGKEIVTKCKGLPLTIKAVGGLLLCKDHVYHEWRRI--AEHFQDEL 390
Query: 176 IGK-----GLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNA 230
G +++ L LSY++L S+ +K +++P+D + K++L+ W+ +G++
Sbjct: 391 RGNTSETDNVMSSLQLSYDELPSH--LKSCILTLSLYPEDCVIPKQQLVHGWIGEGFVMW 448
Query: 231 EEYEEKEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLEI 290
+GE+CF+ L R + +K I++CK+HD+V D ++
Sbjct: 449 RNGRSATESGEDCFSGLTNRCLIEVVDKTYSGTIITCKIHDMVRDLVIDIAK-------- 500
Query: 291 NSTKESVINAFGGKVRHLGL-------------KFKGGASFPMS--IHGLNR-------- 327
K+S N G RHLG+ K +G S + ++ LN
Sbjct: 501 ---KDSFSNPEGLNCRHLGISGNFDEKQIKVNHKLRGVVSTTKTGEVNKLNSDLAKKFTD 557
Query: 328 ---LRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELH-IERLPKTLCELYNLQKLD 383
LR L I +S ++ L +I + + L HL L+LS H + + P+++ +L+NLQ LD
Sbjct: 558 CKYLRVLDI-SKSIFDAPLSEILDEIASLQHLACLSLSNTHPLIQFPRSMEDLHNLQILD 616
Query: 384 IRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGS 443
C+NL++L I K + L SL+ P GI L L L F +G
Sbjct: 617 ASYCQNLKQLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEVLLGFKPARSNNG-- 674
Query: 444 TCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYL 489
C+L +KN +RK G+ L+ ++E E L N+ L+ + +
Sbjct: 675 -CKLSEVKNLTNLRKLGL-SLTRGDQIEEEELDSLINLSKLMSISI 718
|
Disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 129/444 (29%), Positives = 217/444 (48%), Gaps = 51/444 (11%)
Query: 2 WVCVSDTFEEISVANAII-EGLGESTSSLSE------FQSLMSHIHRSIEGKKNFLILND 54
WV +S ++ V +I E E+ + + ++ L+ + ++ K+ ++L+D
Sbjct: 228 WVTISKSYVIEDVFRTMIKEFYKEADTQIPAELYSLGYRELVEKLVEYLQSKRYIVVLDD 287
Query: 55 VWDGDYNKWAPFFLCLNHGLHGSKILVTTRNELVARM---MGSTNIIFIEQLTEEECWSL 111
VW W + L G++GS++++TTR+ VA +GST IE L E+E W L
Sbjct: 288 VWTTGL--WREISIALPDGIYGSRVMMTTRDMNVASFPYGIGSTKH-EIELLKEDEAWVL 344
Query: 112 FKRLAFFGCSFEDC--ERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSE 169
F AF S E C + LEPI +K+ +C+GLP+A +G+++ +K +W+++ +
Sbjct: 345 FSNKAF-PASLEQCRTQNLEPIARKLVERCQGLPLAIASLGSMMSTKKFESEWKKVYSTL 403
Query: 170 MWKAEEIG--KGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGY 227
W+ K + + + LS+NDL +KR F YC++FP +Y M ++ LI +WMAQ +
Sbjct: 404 NWELNNNHELKIVRSIMFLSFNDLPYP--LKRCFLYCSLFPVNYRMKRKRLIRMWMAQRF 461
Query: 228 LNAEEYEEKEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLW 287
+ + E + N L R+ Q N + KMHD++ + A VS E
Sbjct: 462 VEPIRGVKAEEVADSYLNELVYRNMLQVILWNPFGRPKAFKMHDVIWEIALSVSKLERFC 521
Query: 288 LEINSTKES-----VINAFGGKVRHL-----------------GLKFKGGASFPMS-IHG 324
N + + +G RHL L A M +
Sbjct: 522 DVYNDDSDGDDAAETMENYGS--RHLCIQKEMTPDSIRATNLHSLLVCSSAKHKMELLPS 579
Query: 325 LNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDI 384
LN LR L ++D SS+ K+P+ + + +LKYLNLS+ ++ LPK +L NL+ L+
Sbjct: 580 LNLLRALDLED-----SSISKLPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNT 634
Query: 385 RGCRNLRELPTGIGKLKNMRSLLN 408
+ + + ELP G+ KLK +R L+
Sbjct: 635 KHSK-IEELPLGMWKLKKLRYLIT 657
|
Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response. Arabidopsis thaliana (taxid: 3702) |
| >sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 139/499 (27%), Positives = 218/499 (43%), Gaps = 61/499 (12%)
Query: 1 MWVCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDY 60
+WV VS F+ V I + LG+ + Q ++ R I+ K LIL+DVW
Sbjct: 171 IWVTVSKDFDLKRVQMDIAKRLGKRFTREQMNQLGLTICERLIDLKNFLLILDDVWHPID 230
Query: 61 NKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIEQLTEEECWSLFKRLAFFGC 120
L L +L + R E+ +MM + NI + L E+E W LF
Sbjct: 231 LDQLGIPLALERSKDSKVVLTSRRLEVCQQMMTNENIK-VACLQEKEAWELF---CHNVG 286
Query: 121 SFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEEIG--K 178
+ + ++PI + ++ +C GLP+A IG LR K ++ W+ L+ A I +
Sbjct: 287 EVANSDNVKPIAKDVSHECCGLPLAIITIGRTLRGKPQVEVWKHTLNLLKRSAPSIDTEE 346
Query: 179 GLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEKEM 238
+ L LSY+ L N +K F +CA+FP+DY++ ELI W+A+G L+ + + E M
Sbjct: 347 KIFGTLKLSYDFLQDN--MKSCFLFCALFPEDYSIKVSELIMYWVAEGLLDGQHHYEDMM 404
Query: 239 T-GEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFA-QFVSSK----ECLWLEINS 292
G L + D D + KMHD+V DFA F+SS+ L +
Sbjct: 405 NEGVTLVERLKDSCLLE-----DGDSCDTVKMHDVVRDFAIWFMSSQGEGFHSLVMAGRG 459
Query: 293 TKESVINAFGGKVRHLGLKFKGGASFPMS-IHGLNRLRTLLIDD---ESPPNSSLDKIPE 348
E + F V+ + L P + I G+ L LL + + PN L P
Sbjct: 460 LIEFPQDKFVSSVQRVSLMANKLERLPNNVIEGVETLVLLLQGNSHVKEVPNGFLQAFP- 518
Query: 349 NVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNL------------------ 390
+L+ L+LS + I LP + L++L+ L +R C+ L
Sbjct: 519 ------NLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRNLPSLESLVKLQFLDLH 572
Query: 391 ----RELPTGIGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKF--AVGGGVDG-- 441
RELP G+ L ++R + T L+ +P G I +L+SL LD A G+ G
Sbjct: 573 ESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQLSSLEVLDMAGSAYSWGIKGEE 632
Query: 442 ----GSTCRLECLKNFQLI 456
+ + CL + Q +
Sbjct: 633 REGQATLDEVTCLPHLQFL 651
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 132/484 (27%), Positives = 220/484 (45%), Gaps = 66/484 (13%)
Query: 2 WVCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIH----RSIEGKKNFLILNDVW- 56
WVCVS F +V I++ L + Q + +H + +E K+ ++ +D+W
Sbjct: 219 WVCVSQEFTRKNVWQMILQNLTSRETKDEILQMEEAELHDELFQLLETSKSLIVFDDIWK 278
Query: 57 DGDYNKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIFI--EQLTEEECWSLFKR 114
+ D+ P F G K+L+T+R E +A M G+ + E LT E W LF+R
Sbjct: 279 EEDWGLINPIF----PPKKGWKVLITSRTETIA-MHGNRRYVNFKPECLTILESWILFQR 333
Query: 115 LAFFGCS---FEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMW 171
+A F+ + +E +G+++ + C GLP+A KV+G LL +K T DW+R+ SE
Sbjct: 334 IAMPRVDESEFKVDKEMEMMGKQMIKYCGGLPLAVKVLGGLLAAKYTFHDWKRL--SENI 391
Query: 172 KAEEIGK---------GLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLW 222
+G+ + L LS+ +L S +K F Y A FP+D+N+ E+L W
Sbjct: 392 GCHIVGRTDFSDGNNSSVYHVLSLSFEELP--SYLKHCFLYLAHFPEDHNIKVEKLSYCW 449
Query: 223 MAQGYLNAEEYEEKEM--TGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFV 280
A+G L Y + + GE L R+ +C +HD++ + +
Sbjct: 450 AAEGILEPRHYHGQTIRDVGESYIEELVRRNMVIAERDVTTLRFEACHLHDMMREVC-LL 508
Query: 281 SSKECLWLEINSTKESVINAFGGKVRHLGLKFKGGASFPMSIH---GLN--RLRTLLIDD 335
+KE +++I S N+ ++ G + + P ++H +N +L++LLI
Sbjct: 509 KAKEENFVQIASILPPTANS-----QYPGTSRRFVSQNPTTLHVSRDINNPKLQSLLIVW 563
Query: 336 ESPPNS---------------SLD---------KIPENVGKLMHLKYLNLSELHIERLPK 371
E+ S LD +P +GKL+HL+YLNL + RLP
Sbjct: 564 ENRRKSWKLLGSSFIRLELLRVLDLYKAKFEGRNLPSGIGKLIHLRYLNLDLARVSRLPS 623
Query: 372 TLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLD 431
+L L L LDI C +P + + +R L S K + +G+ L +L TL+
Sbjct: 624 SLGNLRLLIYLDINVCTKSLFVPNCLMGMHELRYLRLPFNTS-KEIKLGLCNLVNLETLE 682
Query: 432 KFAV 435
F+
Sbjct: 683 NFST 686
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 677 | ||||||
| 224122712 | 945 | cc-nbs-lrr resistance protein [Populus t | 0.924 | 0.662 | 0.413 | 1e-128 | |
| 224122696 | 906 | cc-nbs-lrr resistance protein [Populus t | 0.889 | 0.664 | 0.402 | 1e-123 | |
| 224130338 | 906 | nbs-lrr resistance protein [Populus tric | 0.886 | 0.662 | 0.397 | 1e-122 | |
| 224114824 | 941 | cc-nbs-lrr resistance protein [Populus t | 0.903 | 0.650 | 0.394 | 1e-122 | |
| 224134406 | 987 | cc-nbs-lrr resistance protein [Populus t | 0.896 | 0.614 | 0.397 | 1e-119 | |
| 224110248 | 888 | cc-nbs-lrr resistance protein [Populus t | 0.878 | 0.670 | 0.401 | 1e-119 | |
| 147825450 | 927 | hypothetical protein VITISV_000086 [Viti | 0.902 | 0.659 | 0.392 | 1e-119 | |
| 359482769 | 904 | PREDICTED: putative disease resistance p | 0.899 | 0.673 | 0.392 | 1e-119 | |
| 147843549 | 970 | hypothetical protein VITISV_000507 [Viti | 0.898 | 0.626 | 0.406 | 1e-119 | |
| 359482790 | 923 | PREDICTED: putative disease resistance p | 0.899 | 0.659 | 0.387 | 1e-118 |
| >gi|224122712|ref|XP_002318907.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222859580|gb|EEE97127.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 298/720 (41%), Positives = 410/720 (56%), Gaps = 94/720 (13%)
Query: 1 MWVCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDY 60
+WVCVS+ F+EI +A AI+E L ++L E QSL+ + SI GK+ L+L+DVW ++
Sbjct: 231 IWVCVSEPFDEIRIAKAILEQLEGRPTNLVELQSLLQGVSESITGKRLLLVLDDVWTENH 290
Query: 61 NKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIEQLTEEECWSLFKRLAFFGC 120
+W L GS+ILVTTR + VA MMG+ + I IE+L++E C S+F +AF
Sbjct: 291 GQWEQLKPSLTGCARGSRILVTTRKDAVATMMGTDHRINIEKLSDEICRSIFNHVAFQER 350
Query: 121 SFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEEIGKG- 179
S ++ ERL IG KIA KCKGLP+AAKV+G L++SK T ++W+R+L SE+W+ +E+ +
Sbjct: 351 SEDERERLTDIGDKIANKCKGLPLAAKVLGGLMQSKRTREEWERVLSSELWRLDEVDRDQ 410
Query: 180 ----LLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEE 235
+ PLLLSY DL S +V+R F YCA+FPKDY M K EL+ +WMAQGY+ +
Sbjct: 411 VESRIFIPLLLSYYDLPS--VVRRCFLYCAMFPKDYEMGKYELVKMWMAQGYIKETSGGD 468
Query: 236 KEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLEINSTKE 295
E+ GE F++LAARSFFQ+FE D + M KMHDIVHDFAQ+++ ECL +++N+
Sbjct: 469 MELVGERYFHVLAARSFFQDFE-TDIFEGMKFKMHDIVHDFAQYMTKNECLTVDVNTLGG 527
Query: 296 SVINAFGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESP------PN--------- 340
+ + +VRHL + SFP+SIH LR+LLID P P+
Sbjct: 528 ATVETSIERVRHLSMMVSEETSFPVSIHKAKGLRSLLIDTRDPSLGAALPDLFKQLTCIR 587
Query: 341 ------SSLDKIPENVGKLMHLKYLNLSEL-HIERLPKTLCELYNLQKLDIRGCRNLREL 393
SS+ +IP VGKL+HL+++NL+ +E LP+T+C+L NLQ LD+ CR+L+EL
Sbjct: 588 SLNLSASSIKEIPNEVGKLIHLRHVNLARCGELESLPETMCDLCNLQSLDVTWCRSLKEL 647
Query: 394 PTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAV-GGGVDGGSTCRLECLKN 452
P IGKL +R L + ++P GI ++T LRTLD F V GGG + L LKN
Sbjct: 648 PNAIGKLIKLRHL-RIYRSGVDFIPKGIERITCLRTLDVFKVCGGGENESKAANLRELKN 706
Query: 453 FQLI------RKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEE 506
I R G G+ + S EA+ LKN + L L L F D E E
Sbjct: 707 LNHIGGSLNIRNLG-GGIEDASDAAEAQ---LKNKKRLRRLELVF--------DREKTEL 754
Query: 507 NEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNG 566
+EG L+EALQPP N+E L I G
Sbjct: 755 QANEGS----------------------------------LIEALQPPSNLEYLTISSYG 780
Query: 567 GNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFLEIEE 625
G LP W+ +LT L L+L C E LPPLG+LP LE+L L LK V+R+ FL IE+
Sbjct: 781 GFDLPNWMMTLTRLLALELHDCTKLEVLPPLGRLPNLERLALRSLK-VRRLDAGFLGIEK 839
Query: 626 SEDDPSSSSSSSSVTAFPKVKSLEIKELEE--GNYRITRKE------NISIIPRLSSLRI 677
E+ + + VTAFPK+K LEI ++E G R + E +ISI+P+L L I
Sbjct: 840 DENASINEGEIARVTAFPKLKILEIWNIKEWDGIERRSVGEEDATTTSISIMPQLRQLTI 899
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122696|ref|XP_002318903.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222859576|gb|EEE97123.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 288/716 (40%), Positives = 399/716 (55%), Gaps = 114/716 (15%)
Query: 1 MWVCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDY 60
+WVCVS+ F+E+ +A AIIE L S ++L E QSL+ + SI+GK+ L+L+DVW ++
Sbjct: 210 IWVCVSEPFDEVRIAKAIIEQLEGSPTNLVELQSLLQRVSESIKGKRFLLVLDDVWTENH 269
Query: 61 NKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIEQLTEEECWSLFKRLAFFGC 120
+W P L L G GS+ILVTTR VA MMG+ ++I +E+L++E C S+F +AF
Sbjct: 270 GQWEPLKLSLKGGAPGSRILVTTRKHSVATMMGTDHMINLERLSDEVCRSIFNHVAFHKR 329
Query: 121 SFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEEIGKGL 180
S ++CERL I KIA KCKGLP+AAK+ E + +G+
Sbjct: 330 SKDECERLTEISDKIANKCKGLPLAAKL-------------------------EHVERGI 364
Query: 181 LTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEKEMTG 240
PLLLSY DL S+V+R F YCA+FPKDY M K+EL+ +WMAQGYL + E+ G
Sbjct: 365 FPPLLLSYYDLP--SVVRRCFLYCAMFPKDYEMVKDELVKMWMAQGYLKETSGGDMELVG 422
Query: 241 EECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLEINSTKESVINA 300
E+ F +LAARSFFQ+FE D+D+ M+ KMHDIVHDFAQ+++ ECL +++N+ + +
Sbjct: 423 EQYFQVLAARSFFQDFE-TDEDEGMTFKMHDIVHDFAQYMTKNECLTVDVNTLGGATVET 481
Query: 301 FGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESP---------------------P 339
+VRHL + SFP+SIH LR+LLID P
Sbjct: 482 SIERVRHLSMMLPNETSFPVSIHKAKGLRSLLIDTRDPSLGAALPDLFKQLTCIRSLNLS 541
Query: 340 NSSLDKIPENVGKLMHLKYLNLSE-LHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIG 398
S + +IP VGKL+HL++LNL+ + +E LP+T+C+L NLQ LD+ CR+L+ELP IG
Sbjct: 542 RSQIKEIPNEVGKLIHLRHLNLAWCVELESLPETICDLCNLQSLDVTWCRSLKELPKAIG 601
Query: 399 KLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAV-GGGVDGGSTCRLECLKNFQLI- 456
KL +R L + + ++P GI ++T LRTLDKF V GGG + L LKN I
Sbjct: 602 KLIKLRHLWID-SSGVAFIPKGIERITCLRTLDKFTVCGGGENESKAANLRELKNLNHIG 660
Query: 457 ---RKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGE 513
R + + NV + +A L N + LL L F+ VD
Sbjct: 661 GSLRIDKVRDIENVRDVVDA----LLNKKRLLCLEWNFKGVD------------------ 698
Query: 514 DEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKW 573
+V E E + L+E L+PP ++E L I GG LP W
Sbjct: 699 -------------SILVKTELPEH------EGSLIEVLRPPSDLENLTIRGYGGLDLPNW 739
Query: 574 LTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSS 632
+ +LT L L L CEN E LPPLG+LP LE+L L LK V+R+ FL +E+ E++
Sbjct: 740 MMTLTRLRMLSLGPCENVEVLPPLGRLPNLERLLLFFLK-VRRLDAGFLGVEKDENE--- 795
Query: 633 SSSSSSVTAFPKVKSLEIKELEE-----GNYRITRKEN------ISIIPRLSSLRI 677
+ VTAFPK+KS I+ LEE G R +E+ ISI+P+L L I
Sbjct: 796 -GEIARVTAFPKLKSFRIRYLEEIEEWDGIERRVGEEDANTTSIISIMPQLQYLGI 850
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130338|ref|XP_002328584.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222838566|gb|EEE76931.1| nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 269/677 (39%), Positives = 384/677 (56%), Gaps = 77/677 (11%)
Query: 1 MWVCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDY 60
+WVCVS+ F+ I +A II E + + +Q L H+ +S+ GKK L+L+DVW D+
Sbjct: 229 IWVCVSEPFDRIRIAKTIINAFDELHTYIL-WQHLQEHLRKSVMGKKFLLVLDDVWTNDF 287
Query: 61 NKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIEQLTEEECWSLFKRLAFFGC 120
W P + L G GS+ILVTTRNE V++MM + ++ + +L+ E+ WSLF + AF+G
Sbjct: 288 RIWEPIKVPLKSGAPGSRILVTTRNEGVSKMMDAAYMLPLGKLSPEDSWSLFSKFAFYGK 347
Query: 121 SFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEEIGKGL 180
S ED + LE IG++IA KC+GLP+A K +G+L+R K T + W+ +L SE+W++EE +G+
Sbjct: 348 SREDRDNLEEIGREIADKCQGLPLAVKSLGSLMRFKETKQAWENVLHSELWESEEAERGI 407
Query: 181 LTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEKEMTG 240
LLLSY+DLS +KR F++CA+FP+D+ + ++ LI LWMAQG+L E E G
Sbjct: 408 FPHLLLSYHDLSPP--IKRCFAFCAIFPRDHKIERDTLIQLWMAQGFLVPTGSVEMEQIG 465
Query: 241 EECFNILAARSFFQEFEKNDDD-DIMSCKMHDIVHDFAQFVSSKECLWLEINSTKESVIN 299
E F+ L RSFFQ+ E++ DD I++C+MHDIV FAQF+S +C +E + +
Sbjct: 466 AEYFDNLVMRSFFQDLERDRDDFSIVACRMHDIVQSFAQFLSKNQCFVIEFDEKNVLEMA 525
Query: 300 AFGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDE----SPPN--------------- 340
+ K RH+ L + P+ I L LRTL + + +PP+
Sbjct: 526 SLHTKARHMTLTGREKQFHPI-IFNLKNLRTLQVLQKDVKTAPPDLFHGLQCLRGLDLSH 584
Query: 341 SSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKL 400
+S+ +P VG+L HL++LNLS L+ LP T+C+LYNL L + GCR L LP G+GKL
Sbjct: 585 TSITGLPSAVGRLFHLRWLNLSGLNFVVLPDTICKLYNLLALKLHGCRRLHRLPRGLGKL 644
Query: 401 KNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIR-KC 459
N+R L T SL +P GI +L++LRTL KF +G +G C + LKN +R
Sbjct: 645 INLRYLNIEETESLSVLPQGIGRLSNLRTLSKFCIGENREG---CNVGELKNLNHLRGHL 701
Query: 460 GIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDG 519
I GL V +++E LKN E+L L L F GG+
Sbjct: 702 EISGLEKVRNVNEVMEANLKNKEHLRSLDLAFSF-----------------GGQ------ 738
Query: 520 GYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTN 579
E +LEALQP N+E L + GG+ILP W+T LT
Sbjct: 739 ----------------------ELITNVLEALQPHPNLEALLVYDYGGSILPSWMTLLTK 776
Query: 580 LSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSS 638
+ DLKL+ C NC++LP LGKLP LEKL + H +VK V EFL I+ D +S + S
Sbjct: 777 MKDLKLLRCVNCKELPSLGKLPSLEKLLIGHFNNVKCVSVEFLGIDPVTD---QNSITES 833
Query: 639 VTAFPKVKSLEIKELEE 655
V FPK+K L + + E
Sbjct: 834 VVLFPKLKELTFRYMVE 850
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224114824|ref|XP_002332291.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222832453|gb|EEE70930.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 287/727 (39%), Positives = 404/727 (55%), Gaps = 115/727 (15%)
Query: 1 MWVCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDY 60
+WVCVSD F+E+ + AI+E L L E QSL+ + SI+G++ L+L+DVW ++
Sbjct: 227 IWVCVSDPFDEVRIGKAILEQLEGRAPDLVELQSLLQRVSESIKGERFLLVLDDVWTENH 286
Query: 61 NKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIEQLTEEECWSLFKRLAFFGC 120
+W L GS+ILVTTR VA MMG+ ++I +E+L++E C S+F +AF
Sbjct: 287 RQWEQLKPSLTGCARGSRILVTTRKHSVATMMGTGHVINLEKLSDEVCRSIFNHVAFQQR 346
Query: 121 SFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEEIG--- 177
S ++ ERL G KIA KCKGLP+AAKV+G L++SK T ++W+R+ SE+W +E+
Sbjct: 347 SKDERERLTDTGDKIANKCKGLPLAAKVLGGLMQSKRTREEWERVFCSELWGLDEVDRDQ 406
Query: 178 --KGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEE 235
+G+ PLLLSY DL SMV+R F YCA+FPKDY M K EL+ +W+AQGYL +
Sbjct: 407 VERGIFLPLLLSYYDLP--SMVRRCFLYCAMFPKDYEMRKYELVKMWIAQGYLKETSGGD 464
Query: 236 KEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLEINSTKE 295
E GE+ F +LAARSFFQ+F+ D +D+ KMHDIVHDFAQ+++ ECL +++N+ +E
Sbjct: 465 MEAVGEQYFQVLAARSFFQDFKTYDREDV-RFKMHDIVHDFAQYMTKNECLTVDVNNLRE 523
Query: 296 SVINAFGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESP------PN--------- 340
+ + +VRHL + FP+SIH LR+L ID P P+
Sbjct: 524 ATVETSIERVRHLSMMLSKETYFPVSIHKAKGLRSLFIDARDPWLGAALPDVFKQLTCIR 583
Query: 341 ------SSLDKIPENVGKLMHLKYLNLSELH-IERLPKTLCELYNLQKLDIRGCRNLREL 393
S + +IP VGKL+HL++LNL++ + +E LP+ +C+L LQ LD+ CR+L EL
Sbjct: 584 SLNLSMSLIKEIPNEVGKLIHLRHLNLADCYKLESLPEIMCDLCKLQSLDVTTCRSLWEL 643
Query: 394 PTGIGKLKNMRSLLNGLTCS--LKYMPIGISKLTSLRTLDKFAV-GGGVDGGSTCRLECL 450
P IGKL +R L C + +MP GI ++T LRTLD FAV GGG D L L
Sbjct: 644 PKAIGKLIKLRHL---RICGSIVAFMPKGIERITCLRTLDWFAVCGGGEDESKAANLREL 700
Query: 451 KNFQLI--------RKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWE 502
KN I + G+EG + A +LKN + L L L+F+ DRE
Sbjct: 701 KNLNHIGGSLRVYNLRGGLEGARD------AAEAQLKNKKRLRCLQLYFD-FDRE----- 748
Query: 503 DEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWI 562
++ L+EALQPP ++E L I
Sbjct: 749 -----------------------------------------NDILIEALQPPSDLEYLTI 767
Query: 563 LFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFL 621
GG P W+ +LT L +L L + N + LPPLG+LP LE LEL LK V+R+ F+
Sbjct: 768 SRYGGLDFPNWMMTLTRLQELTLDYYVNLKVLPPLGRLPNLESLELRGLK-VRRLDVGFI 826
Query: 622 EIEESEDDPSSSSSSSSVTAFPKVKS---LEIKELEE--GNYRITRKE------NISIIP 670
I+ + + VTAFPK+K L +KE+EE G R + E +ISI+P
Sbjct: 827 GIKSVNE-----REIARVTAFPKLKKLWVLNLKEVEEWDGIERRSVGEEDANTTSISIMP 881
Query: 671 RLSSLRI 677
+L L I
Sbjct: 882 QLRQLTI 888
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134406|ref|XP_002321815.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222868811|gb|EEF05942.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 273/686 (39%), Positives = 384/686 (55%), Gaps = 79/686 (11%)
Query: 1 MWVCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDY 60
+WVCVS F+E +VA AIIE L + +L E + L I SIEGKK L+L+DVW+ +
Sbjct: 257 IWVCVSHPFDENTVAKAIIEDLSGAAPNLVELEPLCKRISESIEGKKFLLVLDDVWEDNP 316
Query: 61 NKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIEQLTEEECWSLFKRLAFFGC 120
KW P L G GS+ILVTTR + VA+MM S + + +LT+EECWS+F ++AF+G
Sbjct: 317 RKWEPLKESLKCGAPGSRILVTTRKDTVAKMMESDYSLLLGKLTDEECWSVFSQVAFYGR 376
Query: 121 SFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEEIGKGL 180
S + CE IG++I +CKGLP+AAK +G L++SK+T +DW IL +E+W+ EE+ KG+
Sbjct: 377 SQDACEMFTEIGRQIVYRCKGLPLAAKTLGGLMQSKTTTEDWDNILSNELWEIEEVEKGI 436
Query: 181 LTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEKEMTG 240
PLLLSY DL ++ F+YCA+FPKD+ M + +LI +WMAQGYL A +E E+ G
Sbjct: 437 FPPLLLSYYDLP--VAIRSCFTYCAMFPKDHVMERGKLIKMWMAQGYLKASPSKEMELVG 494
Query: 241 EECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLEINSTKESVINA 300
+ F ILA R+FFQ+F++ D+D I KMHDIVHDFAQF+ EC +E + K +
Sbjct: 495 KGYFEILATRAFFQDFQETDEDSI-KFKMHDIVHDFAQFLMKDECFTVETDVLKRQKTES 553
Query: 301 FGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLI---DDE--SPP---------------- 339
F + RH + A FP SI+ +LR+LLI +D S P
Sbjct: 554 FYERARHAIMTVSNWARFPQSIYKAGKLRSLLIRSFNDTAISKPLLELLRKLTYLRLFDL 613
Query: 340 -NSSLDKIPENVGKLMHLKYLNLSELH-IERLPKTLCELYNLQKLDIRGCRNLRELPTGI 397
S +++IP +VGKL+HL+YL+ S ++ LP+T+ +LYNLQ LD+ C L++LP +
Sbjct: 614 SASQIEEIPSDVGKLLHLRYLDFSYCKWLKELPETISDLYNLQSLDLTWCVALKKLPQKM 673
Query: 398 GKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIR 457
KL +R L + ++P GI +LTSLRTL F V GG L L N +R
Sbjct: 674 RKLIRLRH-LEIFGSGVAFLPRGIEELTSLRTLTNFIVSGGGGQSGAANLGELGNLSHLR 732
Query: 458 -KCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDED 516
IE L NV ++EA + E+K + L+ LYL F N DE D
Sbjct: 733 GTLWIEKLLNVRDVNEAVKAEIKKKKYLIGLYLLF---------------NRDETDLRVD 777
Query: 517 EDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTS 576
E+ L+EALQPP N++ L I G +LPKW+ S
Sbjct: 778 ENA---------------------------LVEALQPPSNLQVLCISEFRGTLLPKWIMS 810
Query: 577 LTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFLEI------EESEDD 629
LT L L + C + E LPP G+LP LEKL++ +++ FL + E
Sbjct: 811 LTKLRGLDISHCGSFEVLPPFGRLPYLEKLKIG--VKTRKLDVGFLGLGPVNNGSEGISK 868
Query: 630 PSSSSSSSSVTAFPKVKSLEIKELEE 655
+ + V+AFPK+K L I ++EE
Sbjct: 869 KGENGEMAPVSAFPKLKELFIWKMEE 894
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110248|ref|XP_002333128.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834939|gb|EEE73388.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 280/697 (40%), Positives = 389/697 (55%), Gaps = 102/697 (14%)
Query: 27 SSLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE 86
++L E QSL+ + SI GK+ L+L+DVW ++ +W L GS+ILVTTR +
Sbjct: 193 TNLVELQSLLQGVSESITGKRLLLVLDDVWTENHGQWEQLKPSLTGCARGSRILVTTRKD 252
Query: 87 LVARMMGSTNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAA 146
VA MMG+ + I IE+L++E C S+F +AF S ++ ERL IG KIA KCKGLP+AA
Sbjct: 253 AVATMMGTDHRINIEKLSDEICRSIFNHVAFQERSEDERERLTDIGDKIANKCKGLPLAA 312
Query: 147 KVIGNLLRSKSTIKDWQRILDSEMWKAEEIGKG-----LLTPLLLSYNDLSSNSMVKRFF 201
KV+G L++SK T ++W+R+L SE+W+ +E+ + + PLLLSY DL S +V+R F
Sbjct: 313 KVLGGLMQSKRTREEWERVLSSELWRLDEVDRDQVESRIFIPLLLSYYDLPS--VVRRCF 370
Query: 202 SYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEKEMTGEECFNILAARSFFQEFEKNDD 261
YCA+FPKD+ M K+EL+ +WMAQGY+ + E+ GE F++LAARSFFQ+FE D
Sbjct: 371 LYCAMFPKDFEMVKDELVKMWMAQGYIKETSGGDMELVGERYFHVLAARSFFQDFE-TDR 429
Query: 262 DDIMSCKMHDIVHDFAQFVSSKECLWLEINSTKESVINAFGGKVRHLGLKFKGGASFPMS 321
+ M KMHDIVHDFAQ+++ ECL +++N+ + + +VRHL + SFP+S
Sbjct: 430 FEGMKFKMHDIVHDFAQYMTKNECLTVDVNTLGGATVETSIERVRHLSMMVSEETSFPVS 489
Query: 322 IHGLNRLRTLLIDDESP------PN---------------SSLDKIPENVGKLMHLKYLN 360
IH LR+LLID P P+ SS+ +IP VGKL+HL+++N
Sbjct: 490 IHKAKGLRSLLIDTRDPSFGAALPDLFKQLTCIRSLDLSASSIKEIPNEVGKLIHLRHVN 549
Query: 361 LSEL-HIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPI 419
L+ +E LP+T+C+L NLQ LD+ CR+L+ELP IGKL +R L + ++P
Sbjct: 550 LARCGELESLPETMCDLCNLQSLDVTWCRSLKELPNAIGKLIKLRHL-RIYRSGVDFIPK 608
Query: 420 GISKLTSLRTLDKFAV-GGGVDGGSTCRLECLKNFQ------LIRKCGIEGLSNVSHLDE 472
GI ++T LRTLD F V GGG + L LKN IR G G+ + S E
Sbjct: 609 GIERITCLRTLDVFKVCGGGENESKAANLRELKNLNHIGGSFSIRNLG-GGIEDASDAAE 667
Query: 473 AERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDG 532
A+ LKN + LL L L F+ Y +E G
Sbjct: 668 AQ---LKNKKRLLRLELGFD----------------------------YNQENG------ 690
Query: 533 EYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCE 592
L+EALQPP ++E L I GG LP W+ +LT L +L+L C N E
Sbjct: 691 -------------ILIEALQPPSDLECLTISSYGGLDLPHWMMTLTRLQELRLDDCTNLE 737
Query: 593 QLPPLGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIK 651
L PLG LP LE L L LK V+R+ FL IE+ E+ + + VTAFPK+K L+ +
Sbjct: 738 VLRPLGGLPNLEILVLSSLK-VRRLDAGFLGIEKDENASINEGEIARVTAFPKLKRLDFR 796
Query: 652 ELEE-----------GNYRITRKENISIIPRLSSLRI 677
L E G + ISI+P+L LRI
Sbjct: 797 HLLEVEEWEGIERRVGEEDVNTTSIISIMPQLQYLRI 833
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147825450|emb|CAN71072.1| hypothetical protein VITISV_000086 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 277/706 (39%), Positives = 390/706 (55%), Gaps = 95/706 (13%)
Query: 1 MWVCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDY 60
+WVCVSD F+ V AI+E L + + +L + ++L I I GKK L+L+DVW ++
Sbjct: 230 IWVCVSDPFDPSRVCRAIVEALEKESCNLHDLEALQQKIQTCIGGKKFLLVLDDVWTENH 289
Query: 61 NKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIEQLTEEECWSLFKRLAFFGC 120
W L+ G GS+ILVTTRNE V MM +T + + +L+E++ LF ++AF G
Sbjct: 290 QLWEQLKSILSCGAVGSRILVTTRNENVVEMMRTTYMHSLGKLSEDKSRELFYQIAFSGK 349
Query: 121 SFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEEIGKGL 180
+ E E L+ IG+KIA KCKGLP+A K +GNL+RSK ++W+ +L SE+WK + G +
Sbjct: 350 NREKMEDLKEIGEKIADKCKGLPLAIKTLGNLMRSKHNREEWENVLCSEVWKLDVFGIYI 409
Query: 181 LTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEKEMTG 240
LLLSY+DL ++R FS+CAVFPKD ++ +ELI LWMAQ YLN++ +E EM G
Sbjct: 410 SPALLLSYHDLPPE--IQRCFSFCAVFPKDSVIWSDELIKLWMAQSYLNSDRSKEMEMVG 467
Query: 241 EECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLEINSTKESVINA 300
F LAARSFFQ+FEK+DD +I+ CKMHDIVHDFAQF++ EC +E+++ K+ ++
Sbjct: 468 RTYFEYLAARSFFQDFEKDDDGNIICCKMHDIVHDFAQFLTQNECFIVEVDNQKKGSMDL 527
Query: 301 FGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDES----------------------- 337
F K+RH L + S + L TLL +E
Sbjct: 528 FFQKIRHATLVVRESTPNFASTCNMKNLHTLLAKEEFBISXVLEALXNLLRHLTCLRALD 587
Query: 338 -PPNSSLDKIPENVGKLMHLKYLNLSELH-IERLPKTLCELYNLQKLDIRGCRNLRELPT 395
N ++++P+ VGKL+HL+YLNLS + + LP+T+C+LYNLQ L+I GC +L++LP
Sbjct: 588 LSRNRLIEELPKEVGKLIHLRYLNLSLCYRLRELPETICDLYNLQTLNIEGCSSLQKLPQ 647
Query: 396 GIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQL 455
+GKL N+R L N T SLK +P GI +L+SL+TLD F V G C++ L+N
Sbjct: 648 AMGKLINLRHLENCNTGSLKGLPKGIGRLSSLQTLDVFIVSS--HGNDECQIGDLRNLNN 705
Query: 456 IR-KCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGED 514
+R I+ L V EAE+ ELKN + +L L F
Sbjct: 706 LRGGLSIQRLDEVKDAGEAEKAELKNRVHFQYLTLEF----------------------- 742
Query: 515 EDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWL 574
G KE G + EALQP N++ L I G P W+
Sbjct: 743 -----GKKEGTKG-------------------VAEALQPHPNLKSLDIFNYGDREWPNWM 778
Query: 575 --TSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPS 631
+SL L L++ C C LP LG+LP LEKL++ + VK +G+EFL
Sbjct: 779 MGSSLAQLKILEIGNCRRCPCLPLLGQLPVLEKLDIWGMDGVKYIGSEFL---------- 828
Query: 632 SSSSSSSVTAFPKVKSLEIKELEE-GNYRITRKENISIIPRLSSLR 676
SS T FPK+K L I ++E + I KE SI+P L+ LR
Sbjct: 829 ----GSSSTVFPKLKELNISRMDELKQWEIKGKEERSIMPCLNHLR 870
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482769|ref|XP_003632834.1| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 275/701 (39%), Positives = 388/701 (55%), Gaps = 92/701 (13%)
Query: 1 MWVCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDY 60
+WVCVSD F+ V AI+E L + L + +++ I I GKK L+L+DVW ++
Sbjct: 210 IWVCVSDPFDPFRVCRAIVEALQKGPCHLHDLEAVQQEIRTCIAGKKFLLVLDDVWTENH 269
Query: 61 NKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIEQLTEEECWSLFKRLAFF-G 119
W L G GS+ILVTTR E V +MMG+T + + +L+ E+ +LF ++AFF
Sbjct: 270 QLWEQLRNTLTSGAVGSRILVTTRKESVVKMMGTTYMHSLGELSLEQSRALFHQIAFFEK 329
Query: 120 CSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEEIGKG 179
S+E E L+ IG+KIA KCKGLP+A K +GNLLR K++ ++W+ +L+SE+W+ +E +
Sbjct: 330 RSWEKEEELKEIGEKIADKCKGLPLAIKTLGNLLRIKNSEEEWKNVLNSEVWQLDEFERD 389
Query: 180 LLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEKEMT 239
+ LLLSY DL ++R FS+CAVFPKD + + ELI LWMAQ YL ++ +E EM
Sbjct: 390 ISPALLLSYYDLPP--AIQRCFSFCAVFPKDSVIVRAELIKLWMAQSYLKSDGRKEMEMV 447
Query: 240 GEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLEINSTKESVIN 299
G F LAARSFFQ+FEK+ D +I+ C+MHDIVHDFAQF++ EC +E+++ K+ ++
Sbjct: 448 GRTYFEYLAARSFFQDFEKDTDGNIIRCEMHDIVHDFAQFLTQNECFIVEVDNQKKGSMD 507
Query: 300 AFGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDD-------------------ESPPN 340
F K+RH L + S + L TLL + + N
Sbjct: 508 LFFQKIRHATLVVRESTPNFASTCNMKNLHTLLAKEAFDSRVLEALGNLTCLRALDLSSN 567
Query: 341 SSLDKIPENVGKLMHLKYLNLSELH-IERLPKTLCELYNLQKLDIRGCRNLRELPTGIGK 399
++++P+ VGKL+HL+YLNLS + LP+T+C+LYNLQ L+I GC +L++LP +GK
Sbjct: 568 DWIEELPKEVGKLIHLRYLNLSWCESLRELPETICDLYNLQTLNIEGCSSLQKLPHAMGK 627
Query: 400 LKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIR-K 458
L N+R L N T SLK +P GI +L+SL+TLD F V G C++ L+N +R +
Sbjct: 628 LINLRHLEN-YTRSLKGLPKGIGRLSSLQTLDVFIVSS--HGNDECQIGDLRNLNNLRGR 684
Query: 459 CGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDED 518
+EGL V E E+ ELKN + +L L F GE E
Sbjct: 685 LSVEGLDEVKDAGEPEKAELKNRVHFQYLTLEF--------------------GEKEGTK 724
Query: 519 GGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWL--TS 576
G + EALQP N++ L I+ G P W+ +S
Sbjct: 725 G---------------------------VAEALQPHPNLKSLGIVDYGDREWPNWMMGSS 757
Query: 577 LTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSS 635
L L L L FC+ C LPPLG+LP LEKL + + VK +G+EFL
Sbjct: 758 LAQLKILHLWFCKRCPCLPPLGQLPVLEKLYIWGMDGVKYIGSEFL-------------- 803
Query: 636 SSSVTAFPKVKSLEIKELEE-GNYRITRKENISIIPRLSSL 675
SS T FPK+K L I L E + I KE SI+P L+ L
Sbjct: 804 GSSSTVFPKLKELAISGLVELKQWEIKEKEERSIMPCLNHL 844
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147843549|emb|CAN79463.1| hypothetical protein VITISV_000507 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 278/684 (40%), Positives = 381/684 (55%), Gaps = 76/684 (11%)
Query: 1 MWVCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDY 60
+WVCVSD FE I V AI+E L + +L + +++ I I G+K L+L+DV DY
Sbjct: 261 IWVCVSDPFEPIRVCRAIVEALQKKPCNLHDLEAVQQEIQTCIAGQKFLLVLDDVCTEDY 320
Query: 61 NKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIEQLTEEECWSLFKRLAFFGC 120
W +N G S++L TTRNE V MM + + +L+ E+ W+LF ++AFF
Sbjct: 321 RLWEQLKNTINCGASRSRVLATTRNESVVMMMRTAYKHPLGELSPEQSWALFHQIAFFEK 380
Query: 121 SFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEEIGKGL 180
S E E L+ IG+KIA K KGLP+A K GNL+R K+ +DW+ IL+SE+W+ +E + +
Sbjct: 381 SREKVEELKAIGEKIADKGKGLPLAIKTSGNLMRLKNNKEDWENILNSEVWQLDEFERDI 440
Query: 181 LTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEKEMTG 240
LLLSY DL +KR FS+CAVFPKD + ++LI LWMAQ YLN+ +E EM G
Sbjct: 441 SPALLLSYYDLP--PAIKRCFSFCAVFPKDSVIEIDKLIKLWMAQDYLNSNASKEMEMVG 498
Query: 241 EECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLWL-EINSTKESVIN 299
E F LAARSFFQ+FEK+ DD+I+ CKMHDIVH FAQF++ EC + E TK S
Sbjct: 499 REYFEYLAARSFFQDFEKDGDDNIIRCKMHDIVHSFAQFLTKNECCIMNEEGRTKTSF-- 556
Query: 300 AFGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLID-------DESPP------------- 339
K+RH L + +S + + LRTLL++ DE+ P
Sbjct: 557 ---QKIRHATLIGQQRHPNFVSTYKMKNLRTLLLEFAVVSSIDEALPNLFQHLTCLRVLD 613
Query: 340 ---NSSLDKIPENVGKLMHLKYLNLSELH-IERLPKTLCELYNLQKLDIRGCRNLRELPT 395
N S ++P+ + KL+HLKYLNLS H + LP+ +C+LYNLQ L+IRGC +L +LP
Sbjct: 614 LARNLSRKELPKAIEKLIHLKYLNLSHCHELRELPEAICDLYNLQTLNIRGCDSLVQLPQ 673
Query: 396 GIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQL 455
+GKL N+R L N LT LK +P GIS+L SL+TL+KF V DG + C + L N
Sbjct: 674 AMGKLINLRHLQNFLTILLKGLPKGISRLNSLQTLEKFTVSS--DGHNECNIGDLGNLSN 731
Query: 456 IR-KCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGED 514
+R + I GL NV + EA LKN ++ HL L F+ E N G
Sbjct: 732 LRGELEIRGLQNVENAREAREANLKNKIHIHHLTLVFD---------PQEGTNYVVGAPR 782
Query: 515 EDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWL 574
E K G + ++EALQP N++ L I G P W+
Sbjct: 783 SYSTNLLPEVKKGP----------------KSVVEALQPHPNLKSLCIRGYGDTEWPGWM 826
Query: 575 --TSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPS 631
+SLT L +L+L C +C +PPLG+LP LE LE+ ++ VK +G EFL
Sbjct: 827 MRSSLTQLKNLELSCCSDCLCMPPLGELPVLETLEIKGVERVKHIGGEFLR--------- 877
Query: 632 SSSSSSSVTAFPKVKSLEIKELEE 655
SSS AFPK+K L + ++E
Sbjct: 878 ----SSSTIAFPKLKKLTFRNMKE 897
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482790|ref|XP_002268671.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 273/704 (38%), Positives = 392/704 (55%), Gaps = 95/704 (13%)
Query: 1 MWVCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDY 60
+WVCVSD ++ I V AI+E L + L + +++ I I G+K L+L+DVW D
Sbjct: 230 IWVCVSDPYDPIRVCRAIVEALQKKPCHLHDLEAVQQEIQTCIAGQKFLLVLDDVWTEDN 289
Query: 61 NKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIEQLTEEECWSLFKRLAFF-G 119
W L+ G GS+IL TTR E V +MM +T + +L+ E+ +LF ++AF+
Sbjct: 290 QLWEQLKNTLHCGAAGSRILATTRKESVVKMMRATYKHPLGELSSEQSRALFHQIAFYER 349
Query: 120 CSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEEIGKG 179
++E E L+ IG+KIA KCKGLP+A K +GNLLR K++ ++W+ +L+SE+W+ +E +
Sbjct: 350 STWEKEEELKEIGEKIADKCKGLPLAIKTLGNLLRIKNSEEEWKNVLNSEVWQLDEFERD 409
Query: 180 LLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEKEMT 239
+ LLLSY DL ++R FS+CAVFPKD + ++ELI LWMAQ YL ++ +E EM
Sbjct: 410 ISPALLLSYYDLPP--AIQRCFSFCAVFPKDSVIERDELIKLWMAQSYLKSDGSKEMEMV 467
Query: 240 GEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLEINSTKESVIN 299
G F LAARSFFQ+FEK+DD +I+ CKMHDIVHDFAQF++ EC +E+++ K+ ++
Sbjct: 468 GRTYFEYLAARSFFQDFEKDDDGNIIHCKMHDIVHDFAQFLTLNECFIVEVDNQKKGSMD 527
Query: 300 AFGGKVRHLGLKFKGGASFPMSIHGLNRLRTLL---------------------IDDESP 338
F K+RH L + S + L TLL +D S
Sbjct: 528 LFFQKIRHATLVVRESTPNFASTCNMKNLHTLLAKRAFDSRVLEALGHLTCLRALDLRS- 586
Query: 339 PNSSLDKIPENVGKLMHLKYLNLSEL-HIERLPKTLCELYNLQKLDIRGCRNLRELPTGI 397
N ++++P+ VGKL+HL+YLNLS + LP+T+C+LYNLQ L+I+ C L++LP +
Sbjct: 587 -NQLIEELPKEVGKLIHLRYLNLSYCDSLRELPETICDLYNLQTLNIQACSRLQKLPQAM 645
Query: 398 GKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIR 457
GKL N+R L N L+ +P GI +L+SL+TLD F V G C++E L+N +R
Sbjct: 646 GKLINLRHLENYDADDLQGLPKGIGRLSSLQTLDVFIVSS--HGNDECQIEDLRNLNNLR 703
Query: 458 -KCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDED 516
+ I+GL V EAE+ EL+N +L L L F
Sbjct: 704 GRLSIQGLDEVKDAGEAEKAELQNRVHLQRLTLEF------------------------- 738
Query: 517 EDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWL-- 574
GG + KG + EALQP N++ L I+ G P W+
Sbjct: 739 --GGEEGTKG--------------------VAEALQPHPNLKFLCIIRYGDREWPNWMMG 776
Query: 575 TSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSS 633
+SL L L L FC C LPPLG+LP LE+L +C + +K +G+EFL
Sbjct: 777 SSLAQLKILHLRFCIRCPCLPPLGQLPVLEELGICFMYGLKYIGSEFL------------ 824
Query: 634 SSSSSVTAFPKVKSLEIKELEE-GNYRITRKENISIIPRLSSLR 676
SS T FPK+K L I L+E + I KE SI+P L++LR
Sbjct: 825 --GSSSTVFPKLKGLYIYGLDELKQWEIKEKEERSIMPCLNALR 866
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 677 | ||||||
| TAIR|locus:2091662 | 1424 | AT3G14460 [Arabidopsis thalian | 0.703 | 0.334 | 0.303 | 4.7e-51 | |
| TAIR|locus:2078012 | 852 | ZAR1 "HOPZ-ACTIVATED RESISTANC | 0.703 | 0.558 | 0.273 | 1.8e-42 | |
| TAIR|locus:2091672 | 1054 | AT3G14470 [Arabidopsis thalian | 0.607 | 0.389 | 0.289 | 1.5e-39 | |
| TAIR|locus:2077572 | 926 | RPM1 "RESISTANCE TO P. SYRINGA | 0.539 | 0.394 | 0.282 | 3.2e-37 | |
| UNIPROTKB|O48647 | 1802 | O48647 "XA1" [Oryza sativa (ta | 0.695 | 0.261 | 0.248 | 8.1e-31 | |
| TAIR|locus:2197739 | 762 | AT1G61300 [Arabidopsis thalian | 0.579 | 0.514 | 0.269 | 1.4e-25 | |
| TAIR|locus:504956483 | 847 | AT3G46730 [Arabidopsis thalian | 0.576 | 0.460 | 0.273 | 5.4e-24 | |
| TAIR|locus:2131689 | 919 | AT4G27220 [Arabidopsis thalian | 0.607 | 0.447 | 0.274 | 6.9e-24 | |
| TAIR|locus:2036214 | 851 | AT1G15890 [Arabidopsis thalian | 0.679 | 0.540 | 0.247 | 8.8e-24 | |
| TAIR|locus:2166320 | 888 | AT5G63020 [Arabidopsis thalian | 0.586 | 0.447 | 0.264 | 3.1e-23 |
| TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 503 (182.1 bits), Expect = 4.7e-51, Sum P(3) = 4.7e-51
Identities = 157/517 (30%), Positives = 243/517 (47%)
Query: 1 MWVCVSDTFEEISVANAIIXXXXXXXXXXXXFQSLMSHIHRSIEGKKNFLILNDVWDGDY 60
MW+ F +V A++ SL + +++ GK+ L+L+D W
Sbjct: 227 MWISAGINFNVFTVTKAVLQDITSSAVNTEDLPSLQIQLKKTLSGKRFLLVLDDFWSESD 286
Query: 61 NKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIEQLTEEECWSLFKRLAFFGC 120
++W F + GSKI++TTR+E+V+ + + I ++ +T EECW L R AF
Sbjct: 287 SEWESFQVAFTDAEEGSKIVLTTRSEIVSTVAKAEKIYQMKLMTNEECWELISRFAFGNI 346
Query: 121 SFEDC-ERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEEIGKG 179
S + LE IG++IA +CKGLP+AA+ I + LRSK DW + S+ + +
Sbjct: 347 SVGSINQELEGIGKRIAEQCKGLPLAARAIASHLRSKPNPDDWYAV--SKNFSSYT---N 401
Query: 180 LLTPXXXXXXXXXXXXMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYL-NAXXXXXXXX 238
+ P + KR F+ C++FPK + +EEL+ LWMA L
Sbjct: 402 SILPVLKLSYDSLPPQL-KRCFALCSIFPKGHVFDREELVLLWMAIDLLYQPRSSRRLED 460
Query: 239 XXXXCFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLEINSTKE--S 296
L A+SFFQ D + S MHD+++D A+ VS C LE ++ E S
Sbjct: 461 IGNDYLGDLVAQSFFQRL----DITMTSFVMHDLMNDLAKAVSGDFCFRLEDDNIPEIPS 516
Query: 297 VIN--AFGGKVRHLGLKFKG--GASFPMSIHGLNR---LRTLLIDDE--SPPNSSLD--- 344
+F + F+ GA F +I N L +L + ++ +P ++L
Sbjct: 517 TTRHFSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLR 576
Query: 345 ----------KIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELP 394
+P+++ L L+YL+LS I+ LP+ +C L NLQ L + CR+L LP
Sbjct: 577 ILSLSHYQITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLP 636
Query: 395 TGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQ 454
I +L N+R LL+ + L MP GI KL SL+ L F +G + G L+ L + +
Sbjct: 637 KSIAELINLR-LLDLVGTPLVEMPPGIKKLRSLQKLSNFVIGR-LSGAGLHELKELSHLR 694
Query: 455 LIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYL-W 490
+ I L NV+ EA+ LK L L L W
Sbjct: 695 GTLR--ISELQNVAFASEAKDAGLKRKPFLDGLILKW 729
|
|
| TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
Identities = 140/512 (27%), Positives = 241/512 (47%)
Query: 1 MWVCVSDTFEEISVANAIIXXXXXXXXXXXXFQSLMSHIHRSIEGKKNFLILNDVWDGDY 60
+WV VS TF E + +I+ +L+ I + + GK+ ++++DVWD +
Sbjct: 216 IWVSVSQTFTEEQIMRSILRNLGDASVGDD-IGTLLRKIQQYLLGKRYLIVMDDVWDKNL 274
Query: 61 NKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTN--IIFIEQLTEEECWSLFKRLAFF 118
+ W + L G GS ++VTTR+E VA+ + + + E L+ + W LF +AF
Sbjct: 275 SWWDKIYQGLPRGQGGS-VIVTTRSESVAKRVQARDDKTHRPELLSPDNSWLLFCNVAF- 332
Query: 119 GCSFEDCER--LEPIGQKIARKCKGLPIAAKVIGNLLRSKSTI-KDWQRILDSEMWKAEE 175
+ CER LE +G++I KCKGLP+ K +G LL K + +W+RI +E ++ E
Sbjct: 333 AANDGTCERPELEDVGKEIVTKCKGLPLTIKAVGGLLLCKDHVYHEWRRI--AEHFQDEL 390
Query: 176 IGKGLLTPXXXXXXXXXXXXM---VKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAXX 232
G T + +K +++P+D + K++L+ W+ +G++
Sbjct: 391 RGNTSETDNVMSSLQLSYDELPSHLKSCILTLSLYPEDCVIPKQQLVHGWIGEGFVMWRN 450
Query: 233 XXXXXXXXXXCFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLE--I 290
CF+ L R + +K I++CK+HD+V D ++ K+ +
Sbjct: 451 GRSATESGEDCFSGLTNRCLIEVVDKTYSGTIITCKIHDMVRDLVIDIAKKDSFSNPEGL 510
Query: 291 NSTKESVINAFGGKVRHLGLKFKGGASFPMS--IHGLNR-----------LRTLLIDDES 337
N + F K + K +G S + ++ LN LR L I +S
Sbjct: 511 NCRHLGISGNFDEKQIKVNHKLRGVVSTTKTGEVNKLNSDLAKKFTDCKYLRVLDIS-KS 569
Query: 338 PPNSSLDKIPENVGKLMHLKYLNLSELH-IERLPKTLCELYNLQKLDIRGCRNLRELPTG 396
++ L +I + + L HL L+LS H + + P+++ +L+NLQ LD C+NL++L
Sbjct: 570 IFDAPLSEILDEIASLQHLACLSLSNTHPLIQFPRSMEDLHNLQILDASYCQNLKQLQPC 629
Query: 397 IGKLKNMRSLLNGLTC-SLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQL 455
I K + +L+ C SL+ P GI L L L F +G C+L +KN
Sbjct: 630 IVLFKKLL-VLDMTNCGSLECFPKGIGSLVKLEVLLGFKPARSNNG---CKLSEVKNLTN 685
Query: 456 IRKCGIEGLSNVSHLDEAERLELKNMENLLHL 487
+RK G+ L+ ++E E L N+ L+ +
Sbjct: 686 LRKLGLS-LTRGDQIEEEELDSLINLSKLMSI 716
|
|
| TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 410 (149.4 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 129/446 (28%), Positives = 209/446 (46%)
Query: 1 MWVCVSDTFEEISVANAIIXXXXXXXXXXXXFQSLMSHIHRSIEGK--KNFLILNDVWDG 58
+W VS+ F+ + + L + + G L+L+D+W+
Sbjct: 230 VWAHVSEEFDVFKITKKVYESVTSRPCEFTDLDVLQVKLKERLTGTGLPFLLVLDDLWNE 289
Query: 59 DYNKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIEQLTEEECWSLFKRLAFF 118
++ W H GS+ILVTTR++ VA +M + ++ ++ L++ +CWSLF + F
Sbjct: 290 NFADWDLLRQPFIHAAQGSQILVTTRSQRVASIMCAVHVHNLQPLSDGDCWSLFMKTVF- 348
Query: 119 GCSFEDCERLE--PIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEEI 176
G + E C E + ++I KC+GLP+A K +G +LR + + +W+R+L S +W
Sbjct: 349 G-NQEPCLNREIGDLAERIVHKCRGLPLAVKTLGGVLRFEGKVIEWERVLSSRIWDLPA- 406
Query: 177 GKGLLTPXXXXXXXXXXXXMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAXXXXXX 236
K L P + KR F+YC++FPK + K++++ LWMA+G+L
Sbjct: 407 DKSNLLPVLRVSYYYLPAHL-KRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKN 465
Query: 237 XXXXXX-CFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLEINSTKE 295
F+ L +RS Q K IM HD +++ AQF S + E + K
Sbjct: 466 LEELGNEYFSELESRSLLQ---KTKTRYIM----HDFINELAQFASGEFSSKFE-DGCKL 517
Query: 296 SVINAFGGKVRHLGLKFKGGASFPMSIHGLNR---LRTLLIDDESPPNSS----LDK-IP 347
V + R+L + + PM L LRT L S NSS LD+ +
Sbjct: 518 QVSE----RTRYLSY-LRDNYAEPMEFEALREVKFLRTFL--PLSLTNSSRSCCLDQMVS 570
Query: 348 ENV-GKLMHLKYLNLSELHIERLPKTLCE-LYNLQKLDIRGCRNLRELPTGIGKLKNMRS 405
E + L L+ L+LS I RLP + + + + LD+ L +LP + + N+++
Sbjct: 571 EKLLPTLTRLRVLSLSHYKIARLPPDFFKNISHARFLDLSRTE-LEKLPKSLCYMYNLQT 629
Query: 406 LLNGLTCSLKYMPIGISKLTSLRTLD 431
LL SLK +P IS L +LR LD
Sbjct: 630 LLLSYCSSLKELPTDISNLINLRYLD 655
|
|
| TAIR|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 403 (146.9 bits), Expect = 3.2e-37, Sum P(2) = 3.2e-37
Identities = 114/403 (28%), Positives = 195/403 (48%)
Query: 32 FQSLMSHIHRSIEGKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNELVARM 91
++ L+ + ++ K+ ++L+DVW W + L G++GS++++TTR+ VA
Sbjct: 265 YRELVEKLVEYLQSKRYIVVLDDVWTTGL--WREISIALPDGIYGSRVMMTTRDMNVASF 322
Query: 92 ---MGSTNIIFIEQLTEEECWSLFKRLAFFGCSFEDC--ERLEPIGQKIARKCKGLPIAA 146
+GST IE L E+E W LF AF S E C + LEPI +K+ +C+GLP+A
Sbjct: 323 PYGIGSTKHE-IELLKEDEAWVLFSNKAF-PASLEQCRTQNLEPIARKLVERCQGLPLAI 380
Query: 147 KVIGNLLRSKSTIKDWQRILDSEMWKAEEIGKGLLTPXXXXXXXXXXXXMVKRFFSYCAV 206
+G+++ +K +W+++ + W+ + + +KR F YC++
Sbjct: 381 ASLGSMMSTKKFESEWKKVYSTLNWELNNNHELKIVRSIMFLSFNDLPYPLKRCFLYCSL 440
Query: 207 FPKDYNMYKEELISLWMAQGYLNAXXXXXXXXXXXXCFNILAARSFFQEFEKNDDDDIMS 266
FP +Y M ++ LI +WMAQ ++ N L R+ Q N +
Sbjct: 441 FPVNYRMKRKRLIRMWMAQRFVEPIRGVKAEEVADSYLNELVYRNMLQVILWNPFGRPKA 500
Query: 267 CKMHDIVHDFAQFVSSKECLWLEINSTKES-----VINAFGGKVRHLGLKFKGGASFPMS 321
KMHD++ + A VS E N + + +G RHL ++ + P S
Sbjct: 501 FKMHDVIWEIALSVSKLERFCDVYNDDSDGDDAAETMENYGS--RHLCIQKE---MTPDS 555
Query: 322 IHGLNRLRTLLIDDESP------PN-----------SSLDKIPENVGKLMHLKYLNLSEL 364
I N L +LL+ + P+ SS+ K+P+ + + +LKYLNLS+
Sbjct: 556 IRATN-LHSLLVCSSAKHKMELLPSLNLLRALDLEDSSISKLPDCLVTMFNLKYLNLSKT 614
Query: 365 HIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLL 407
++ LPK +L NL+ L+ + + + ELP G+ KLK +R L+
Sbjct: 615 QVKELPKNFHKLVNLETLNTKHSK-IEELPLGMWKLKKLRYLI 656
|
|
| UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 361 (132.1 bits), Expect = 8.1e-31, Sum P(2) = 8.1e-31
Identities = 128/516 (24%), Positives = 233/516 (45%)
Query: 1 MWVCVSDTFEEISVANAIIXXXXXXXXXXXX-FQSLMSHIHRSIEGKKNFLILNDVWDGD 59
+WV VSD F+ + + I+ +L + ++ KK ++L+DVW+
Sbjct: 353 IWVYVSDKFDVVKITRQILDHVSNQSHEGISNLDTLQQDLEEQMKSKKFLIVLDDVWEIR 412
Query: 60 YNKWAPFFLCL--NHGLH-------GSKILVTTRNELVARMMGSTNIIFIEQLTEEECWS 110
+ W L N ++ G+ I++TTR + +A+ +G+ I +E L +++ WS
Sbjct: 413 TDDWKKLLAPLRPNDQVNSSQEEATGNMIILTTRIQSIAKSLGTVQSIKLEALKDDDIWS 472
Query: 111 LFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEM 170
LFK AF + L+ +G++IA + KG P+AAK +G+LL + TI W I+ SE
Sbjct: 473 LFKVHAFGNDKHDSSPGLQVLGKQIASELKGNPLAAKTVGSLLGTNLTIDHWDSIIKSEE 532
Query: 171 WKAEEIGKGLLTPXXXXXXXXXXXXMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNA 230
WK+ + G++ +++ SYC++FPK Y+ K +LI +W+AQG++
Sbjct: 533 WKSLQQAYGIMQ--ALKLSYDHLSNPLQQCVSYCSLFPKGYSFSKAQLIQIWIAQGFVEE 590
Query: 231 XXXXXXXXXXXXCFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLEI 290
++ + F Q+ E MHD++HD AQ VS E ++
Sbjct: 591 SSEKLEQKGWKYLAELVNS-GFLQQVESTRFSSEYFV-MHDLMHDLAQKVSQTEYATIDG 648
Query: 291 NSTKESVINAFGGKVRHLGL---------KFKG---GASFP---MSIHGLNRLRTLLIDD 335
+ E +RHL + K++ F M + ++LR+L++
Sbjct: 649 SECTE-----LAPSIRHLSIVTDSAYRKEKYRNISRNEVFEKRLMKVKSRSKLRSLVLIG 703
Query: 336 ESPPNSSLDKIPENVGK-LMHLKYLNLSELHIERLPKTLCELYN---LQKLDIRGCRNLR 391
+ +S K ++ K HL+ L ++ + + L L N L+ L I + R
Sbjct: 704 QY--DSHFFKYFKDAFKEAQHLRLLQITATYADS-DSFLSSLVNSTHLRYLKIVTEESGR 760
Query: 392 ELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKF-AVGGGVDG-GSTCRLEC 449
LP + K +++ L G + + I+ L SLR L + V + G L+
Sbjct: 761 TLPRSLRKYYHLQVLDIGYRFGIPRISNDINNLLSLRHLVAYDEVCSSIANIGKMTSLQE 820
Query: 450 LKNFQLIRKC-GIEGLSNVSHLDEAERLELKNMENL 484
L NF + G E ++ + +++ +L + +EN+
Sbjct: 821 LGNFIVQNNLSGFE-VTQLKSMNKLVQLSVSQLENV 855
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| TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 323 (118.8 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 117/434 (26%), Positives = 207/434 (47%)
Query: 39 IHRSIEGKKNFLILNDVWDG-DYNK-WAPFFLCLNHGLHGSKILVTTRNELVARMMGSTN 96
IHR ++GK+ L+L+D+W+ D P+ +N K+ TTR++ V MG
Sbjct: 136 IHRVLKGKRFVLMLDDIWEKVDLEAIGVPYPSEVNK----CKVAFTTRDQKVCGEMGDHK 191
Query: 97 IIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSK 156
+ ++ L E+ W LFK D +E + +++A+KC+GLP+A VIG + SK
Sbjct: 192 PMQVKCLEPEDAWELFKNKVGDNTLRSDPVIVE-LAREVAQKCRGLPLALSVIGETMASK 250
Query: 157 STIKDWQRILDSEMWKAEE---IGKGLLTPXXXXXXXXXXXXMVKRFFSYCAVFPKDYNM 213
+ +++W+ +D A E +G +L P +K F YCA+FP+D +
Sbjct: 251 TMVQEWEHAIDVLTRSAAEFSNMGNKIL-PILKYSYDSLGDEHIKSCFLYCALFPEDDEI 309
Query: 214 YKEELISLWMAQGYLNAXXXXXXXXXXXXCFNILAARSFFQEFEKNDDDDIMSCKMHDIV 273
Y E+LI W+ +G++ + +L + K + ++ MHD+V
Sbjct: 310 YNEKLIDYWICEGFIGEDQVIKRARNKG--YEMLGTLTLANLLTKVGTEHVV---MHDVV 364
Query: 274 HDFAQFVSSKECLWLEINSTKES-VINAFGGKVRHLGLKFKGGASFPMSIHGLNRLRTLL 332
+ A +++S + KE+ V+ A G K GA MS+ N + +
Sbjct: 365 REMALWIAS------DFGKQKENFVVRARVGLHERPEAK-DWGAVRRMSLMD-NHIEEIT 416
Query: 333 IDDESPPNSSL----DKIPENVGKLMH----LKYLNLS-ELHIERLPKTLCELYNLQKLD 383
+ + ++L +++ G+ + L L+LS +LP+ + L +LQ LD
Sbjct: 417 CESKCSELTTLFLQSNQLKNLSGEFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLD 476
Query: 384 IRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGGVDGG 442
+ ++++LP G+ KLK + + LN L +++ I GIS+L SLR L +G V G
Sbjct: 477 LSNT-SIKQLPVGLKKLKKL-TFLN-LAYTVRLCSISGISRLLSLRLLR--LLGSKVHGD 531
Query: 443 STC--RLECLKNFQ 454
++ L+ L+N Q
Sbjct: 532 ASVLKELQKLQNLQ 545
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| TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 311 (114.5 bits), Expect = 5.4e-24, Sum P(2) = 5.4e-24
Identities = 115/421 (27%), Positives = 197/421 (46%)
Query: 33 QSLMSHIHRSIEGKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNELVAR-M 91
+ L +++ +EGK ++++DVWD D W L GSK+++TTR +A +
Sbjct: 258 EELEVYLYGLLEGKNYMVVVDDVWDPD--AWESLKRALPCDHRGSKVIITTRIRAIAEGV 315
Query: 92 MGSTNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGN 151
G+ + LT EE W+LF+R AF D E L+ G+++ +KC GLP+A V+
Sbjct: 316 EGTVYAHKLRFLTFEESWTLFERKAFSNIEKVD-EDLQRTGKEMVKKCGGLPLAIVVLSG 374
Query: 152 LLRSKSTIKDWQRILDSEMWKAEEIGKGLLTPXXXXXXXXXXXXMVKRFFSYCAVFPKDY 211
LL K T +W + S +W+ + + +K F Y +VFP+DY
Sbjct: 375 LLSRKRT-NEWHEVCAS-LWRRLK-DNSIHISTVFDLSFKEMRHELKLCFLYFSVFPEDY 431
Query: 212 NMYKEELISLWMAQGYLNAXXXXXXXXXXXXCFNILAARSFFQEFEKNDDDDIMSCKMHD 271
+ E+LI L +A+G++ + L RS + E+ + +MSC++HD
Sbjct: 432 EIKVEKLIHLLVAEGFIQEDEEMMMEDVARCYIDELVDRSLVKA-ERIERGKVMSCRIHD 490
Query: 272 IVHDFAQFVSSKECLWLEINSTKESVINAFGGKVRHLGLKFKGGASFPMSIHGLN-RLRT 330
++ D A +KE ++ + + K+ + +V H + + + +N R+R+
Sbjct: 491 LLRDLA-IKKAKELNFVNVYNEKQHSSDICRREVVHHLMN-----DYYLCDRRVNKRMRS 544
Query: 331 LLIDDESPPNSSLDKIPENVGKLMHLKYLNLSEL-----HIER-LPKTLCELYNLQKLDI 384
L E ++ N+ KL L+ LN+ L +I LP + EL +L+ L I
Sbjct: 545 FLFIGERRGFGYVNTT--NL-KLKLLRVLNMEGLLFVSKNISNTLPDVIGELIHLRYLGI 601
Query: 385 RGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLR-TLDKFA----VGGGV 439
+ LP I L+ +++L +Y +SKLTSLR + KF +G GV
Sbjct: 602 ADTY-VSILPASISNLRFLQTLDASGNDPFQYTT-DLSKLTSLRHVIGKFVGECLIGEGV 659
Query: 440 D 440
+
Sbjct: 660 N 660
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| TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 313 (115.2 bits), Expect = 6.9e-24, Sum P(2) = 6.9e-24
Identities = 120/437 (27%), Positives = 195/437 (44%)
Query: 1 MWVCVSDTFEEISVANAIIXXXXXXXXXXXXFQSLMSHIHRSIEGKKNFLILNDVWDG-D 59
+WV VS F+ V I Q ++ R I+ K LIL+DVW D
Sbjct: 171 IWVTVSKDFDLKRVQMDIAKRLGKRFTREQMNQLGLTICERLIDLKNFLLILDDVWHPID 230
Query: 60 YNKWAPFFLCLNHGLHGSKILVTTRN-ELVARMMGSTNIIFIEQLTEEECWSLFKRLAFF 118
++ L L SK+++T+R E+ +MM + NI + L E+E W LF
Sbjct: 231 LDQLG-IPLALERS-KDSKVVLTSRRLEVCQQMMTNENIK-VACLQEKEAWELFCHNV-- 285
Query: 119 GCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEEIGK 178
G + + ++PI + ++ +C GLP+A IG LR K ++ W+ L+ A I
Sbjct: 286 G-EVANSDNVKPIAKDVSHECCGLPLAIITIGRTLRGKPQVEVWKHTLNLLKRSAPSIDT 344
Query: 179 GLLTPXXXXXXXXXXXXMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAXXXXXXXX 238
+K F +CA+FP+DY++ ELI W+A+G L+
Sbjct: 345 EEKIFGTLKLSYDFLQDNMKSCFLFCALFPEDYSIKVSELIMYWVAEGLLDGQHHYEDMM 404
Query: 239 XXXXCFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFA-QFVSSK----ECLWLEINST 293
S E D D + KMHD+V DFA F+SS+ L +
Sbjct: 405 NEGVTLVERLKDSCLLE----DGDSCDTVKMHDVVRDFAIWFMSSQGEGFHSLVMAGRGL 460
Query: 294 KESVINAFGGKVRHLGLKFKGGASFPMS-IHGLNRLRTLLIDDESPPNSSLDKIPEN-VG 351
E + F V+ + L P + I G+ L LL+ NS + ++P +
Sbjct: 461 IEFPQDKFVSSVQRVSLMANKLERLPNNVIEGVETL-VLLLQG----NSHVKEVPNGFLQ 515
Query: 352 KLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLT 411
+L+ L+LS + I LP + L++L+ L +R C+ LR LP+ + L ++ L+
Sbjct: 516 AFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRNLPS-LESLVKLQ-FLDLHE 573
Query: 412 CSLKYMPIGISKLTSLR 428
+++ +P G+ L+SLR
Sbjct: 574 SAIRELPRGLEALSSLR 590
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| TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 8.8e-24, P = 8.8e-24
Identities = 125/505 (24%), Positives = 226/505 (44%)
Query: 1 MWVCVSDTFEEISVANAIIXXXXXXXXXXXXFQS-LMSHIHRSIEGKKNFLILNDVW-DG 58
+WV VS + + I+ + S+I + KK L+L+D+W +
Sbjct: 209 IWVVVSKDLQNEGIQEQILGRLGLHRGWKQVTEKEKASYICNILNVKKFVLLLDDLWSEV 268
Query: 59 DYNKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIEQLTEEECWSLFKRLAFF 118
D K L +G SKI+ TTR++ V R M + ++ L +E W LF++
Sbjct: 269 DLEKIGVPPLTRENG---SKIVFTTRSKDVCRDMEVDGEMKVDCLPPDEAWELFQKKVG- 324
Query: 119 GCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRI---LDSEMWKAEE 175
+ E + + +K+A KC GLP+A VIG + S+ T+++WQ + L+S +
Sbjct: 325 PIPLQSHEDIPTLARKVAEKCCGLPLALSVIGKAMASRETVQEWQHVIHVLNSSSHEFPS 384
Query: 176 IGKGLLTPXXXXXXXXXXXXMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAXXXXX 235
+ + +L P VK F YC++FP+DY + KEELI WM +G+++
Sbjct: 385 MEEKIL-PVLKFSYDDLKDEKVKLCFLYCSLFPEDYEVRKEELIEYWMCEGFIDGNEDED 443
Query: 236 XXXXXXXCFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLEINSTKE 295
+I+ S + D + KMHD++ + A +++S KE
Sbjct: 444 GANNKGH--DIIG--SLVRAHLLMDGELTTKVKMHDVIREMALWIASN------FGKQKE 493
Query: 296 SVINAFGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMH 355
++ G ++ H+ + MS+ N++ + SP S+L + +N KL+H
Sbjct: 494 TLCVKPGVQLCHIPKDINWESLRRMSLM-CNQIANISSSSNSPNLSTL--LLQN-NKLVH 549
Query: 356 LK-----------YLNLSE-LHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNM 403
+ L+LS + LP+ + +L +LQ +++ ++ LP +LK +
Sbjct: 550 ISCDFFRFMPALVVLDLSRNSSLSSLPEAISKLGSLQYINL-STTGIKWLPVSFKELKKL 608
Query: 404 RSLLNGLTCSLKYMPIGIS-KLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIR---KC 459
L T L+ + +GI+ L +L+ L F+ +DG L L++ +++ K
Sbjct: 609 IHLNLEFTDELESI-VGIATSLPNLQVLKLFSSRVCIDGSLMEELLLLEHLKVLTATIKD 667
Query: 460 GI--EGLSNVSHL-DEAERLELKNM 481
+ E + V L + L L+NM
Sbjct: 668 ALILESIQGVDRLVSSIQALCLRNM 692
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| TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 306 (112.8 bits), Expect = 3.1e-23, Sum P(2) = 3.1e-23
Identities = 115/435 (26%), Positives = 201/435 (46%)
Query: 37 SHIHRSIEGKKNFLILNDVWDG-DYNK-WAPFFLCLNHGLHGSKILVTTRNELVARMMGS 94
S+I+ ++ K+ L+L+D+W D + PF N G KI+ TTR + + MG
Sbjct: 247 SNIYNVLKHKRFVLLLDDIWSKVDLTEVGVPFPSREN----GCKIVFTTRLKEICGRMGV 302
Query: 95 TNIIFIEQLTEEECWSLF-KRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLL 153
+ + + L ++ W LF K++ + + + + +A+KC+GLP+A VIG +
Sbjct: 303 DSDMEVRCLAPDDAWDLFTKKVGEI--TLGSHPEIPTVARTVAKKCRGLPLALNVIGETM 360
Query: 154 RSKSTIKDWQRILDSEMWKAEEIGKGL---LTPXXXXXXXXXXXXMVKRFFSYCAVFPKD 210
K T+++W+ +D A E G+ + P +K F YCA+FP+D
Sbjct: 361 AYKRTVQEWRSAIDVLTSSAAEFS-GMEDEILPILKYSYDNLKSEQLKLCFQYCALFPED 419
Query: 211 YNMYKEELISLWMAQGYLNAXXXXXXXXXXXXCFNILAARSFFQEFEKNDDDDIMSCKMH 270
+N+ K +L+ W+ +G+++ IL RS E+N + + KMH
Sbjct: 420 HNIEKNDLVDYWIGEGFIDRNKGKAENQGYEI-IGILV-RSCLL-MEENQE----TVKMH 472
Query: 271 DIVHDFAQFVSSKECLWLEINSTKESVINAFGGKVRHLGLKFKGGASFPMSIHGLNRLRT 330
D+V + A +++S + KE+ I G + R++ K + +S+ N + +
Sbjct: 473 DVVREMALWIAS------DFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLM-FNNIES 525
Query: 331 LLIDDESPP-------NSSLDKIPENVGKLMH-LKYLNLS-ELHIERLPKTLCELYNLQK 381
+ ESP + L I + +LM L L+LS + LP + E +LQ
Sbjct: 526 IRDAPESPQLITLLLRKNFLGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQY 585
Query: 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDG 441
L + R +R P G+ +L+ + L T ++ + GIS LTSL+ L F G D
Sbjct: 586 LSLSRTR-IRIWPAGLVELRKLLYLNLEYTRMVESI-CGISGLTSLKVLRLFVSGFPEDP 643
Query: 442 GSTCRLECLKNFQLI 456
L+ L+N Q +
Sbjct: 644 CVLNELQLLENLQTL 658
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pg.C_LG_XII001317 | cc-nbs-lrr resistance protein (945 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 677 | |||
| pfam00931 | 285 | pfam00931, NB-ARC, NB-ARC domain | 1e-47 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 5e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 5e-04 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 0.004 |
| >gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 1e-47
Identities = 87/236 (36%), Positives = 130/236 (55%), Gaps = 10/236 (4%)
Query: 1 MWVCVSDTFEEISVANAIIEGLGESTSSLSE--FQSLMSHIHRSIEGKKNFLILNDVWDG 58
WV VS T+ E + I++ LG S E L I ++ K+ L+L+DVW+
Sbjct: 53 AWVVVSKTYTEFRLQKDILQELGLDDSDWVEKNESELAVKIKEALLRKRFLLVLDDVWE- 111
Query: 59 DYNKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTN-IIFIEQLTEEECWSLFKRLAF 117
N W + G +GS+++VTTR+E VA MG T+ +E L EE W LF F
Sbjct: 112 -KNDWDKIGVPFPDGENGSRVIVTTRSESVAGRMGGTSKPHEVESLEPEESWELFSNKVF 170
Query: 118 FGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEEIG 177
C LE + ++I KCKGLP+A KV+G LL KST+++W+ +L+ +
Sbjct: 171 EK-ELPPCPELEEVAKEIVEKCKGLPLALKVLGGLLAFKSTVQEWEHVLEQLNNELAGRD 229
Query: 178 --KGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAE 231
+L+ L LSY++L +KR F Y A+FP+DYN+ KE+LI LW+A+G++
Sbjct: 230 GLNEVLSILSLSYDNL--PMHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGFVIPS 283
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Length = 285 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 496 REDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEK 543
R D+ W DE+E ED+ +++ G E + +++ G R+R EK
Sbjct: 206 RRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEK 253
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Length = 1355 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 5e-04
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 340 NSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGK 399
++ ++ +P + L +LK L+LS + LPK L L NL LD+ G + +LP I
Sbjct: 149 DNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIEL 207
Query: 400 LKNMRSLLNGLTCSLKYMPIGISKLTSLRTLD 431
L + L ++ + +S L +L L+
Sbjct: 208 LSALEELDLSNNSIIE-LLSSLSNLKNLSGLE 238
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Length = 394 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 100/423 (23%), Positives = 171/423 (40%), Gaps = 94/423 (22%)
Query: 76 GSKILVTTRNELVARMMGSTNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKI 135
GS+I+V T+++ R G +I + + E +F R AF S D + ++
Sbjct: 324 GSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPD--GFMELASEV 381
Query: 136 ARKCKGLPIAAKVIGNLLRSKSTIKDW-------QRILDSEMWKAEEIGKGLLTPLLLSY 188
A + LP+ V+G+ LR + +DW + LD ++ K L +SY
Sbjct: 382 ALRAGNLPLGLNVLGSYLRGRD-KEDWMDMLPRLRNGLDGKIEKT----------LRVSY 430
Query: 189 NDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNA----EEYEEKEMTGEECF 244
+ L+ N K F + A +N K I L +A L+ + +K +
Sbjct: 431 DGLN-NKKDKAIFRHIACL---FNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-E 485
Query: 245 NILAARSFFQEF----------EKNDDDDIMSCK-MHDIVHDFAQFVSSKECLW--LEIN 291
+I+ S QE E + + ++ K + D++ D +K+ L L+I+
Sbjct: 486 DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNT---GTKKVLGITLDID 542
Query: 292 STKESVI--NAFGGKVRHLGLKF----------------KGGASFPMSIHGLNRLRTLLI 333
E I NAF G L LKF +G P +LR L
Sbjct: 543 EIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLP------PKLRLLRW 596
Query: 334 D---------DESPPN--------SSLDKIPENVGKLMHLKYLNL--SELHIERLPKTLC 374
D + P N S L+K+ + V L L+ ++L S+ +++ +P L
Sbjct: 597 DKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSK-NLKEIPD-LS 654
Query: 375 ELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFA 434
NL+ L + C +L ELP+ I L + L +L+ +P GI +L++L +
Sbjct: 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI----NLKSLYRLN 710
Query: 435 VGG 437
+ G
Sbjct: 711 LSG 713
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syringae 6; Provisional. Length = 1153 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 677 | |||
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 100.0 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 100.0 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 99.97 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.87 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.86 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.81 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.77 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.77 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.76 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.72 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.66 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.64 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.55 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.55 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.48 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.47 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.44 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.42 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.4 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.39 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.29 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.26 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.18 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.11 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.08 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.07 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.69 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.68 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.63 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.62 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.6 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.5 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.5 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.49 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.47 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.42 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.35 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.33 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.32 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.27 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.25 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.23 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.22 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.19 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.19 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.09 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.07 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.01 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.88 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.85 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.85 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.59 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.55 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.38 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 97.31 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.27 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.24 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.17 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.15 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.12 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.95 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 96.79 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 96.75 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 96.69 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.35 | |
| PF05729 | 166 | NACHT: NACHT domain | 96.27 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 96.25 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 96.24 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.24 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.04 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.02 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.92 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 95.86 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.74 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 94.83 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 94.32 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.22 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 94.02 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.23 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 93.09 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 93.03 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 92.83 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 92.39 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 92.37 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 91.99 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 91.65 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 91.61 | |
| PRK09087 | 226 | hypothetical protein; Validated | 91.56 | |
| PF13173 | 128 | AAA_14: AAA domain | 91.18 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 91.08 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 91.06 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 89.77 | |
| PRK08727 | 233 | hypothetical protein; Validated | 89.22 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 88.91 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 88.01 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 87.84 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 87.79 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 87.72 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 86.7 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 86.7 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 86.63 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 86.02 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 85.96 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 84.95 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 84.08 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 84.06 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 83.35 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 83.26 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 82.65 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 82.1 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 82.1 | |
| PRK06620 | 214 | hypothetical protein; Validated | 82.03 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 81.99 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 81.8 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 81.64 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 81.41 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 81.06 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 80.84 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 80.6 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 80.3 |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-65 Score=576.99 Aligned_cols=536 Identities=29% Similarity=0.409 Sum_probs=414.9
Q ss_pred CeEEecCCCCHHHHHHHHHHHhcCCCCCCc--hHHHHHHHHHHHcCCccEEEEEECCcCCCccchhhhhhhhcCCCCCcE
Q 038430 1 MWVCVSDTFEEISVANAIIEGLGESTSSLS--EFQSLMSHIHRSIEGKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSK 78 (677)
Q Consensus 1 ~WV~vs~~~~~~~i~~~i~~~l~~~~~~~~--~~~~~~~~i~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~ 78 (677)
|||+||+.|+...++++|++.++..+.... +.++.+..|.+.|++|||+|||||||+. .+|+.+..++|...+|||
T Consensus 214 iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~K 291 (889)
T KOG4658|consen 214 IWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSK 291 (889)
T ss_pred EEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeE
Confidence 799999999999999999999988665443 3578999999999999999999999998 679999999999989999
Q ss_pred EEEEcCchHHHHh-cCCCCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHHhccCC
Q 038430 79 ILVTTRNELVARM-MGSTNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKS 157 (677)
Q Consensus 79 IiiTTR~~~v~~~-~~~~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~~ 157 (677)
|++|||++.|+.. +++...++|++|..+|||+||++.||...... ++.+.++|++|+++|+|+|||++++|+.|+.|.
T Consensus 292 vvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~-~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~ 370 (889)
T KOG4658|consen 292 VVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGS-HPDIEELAKEVAEKCGGLPLALNVLGGLLACKK 370 (889)
T ss_pred EEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccc-cccHHHHHHHHHHHhCChHHHHHHHHHHhcCCC
Confidence 9999999999999 88888999999999999999999998765533 345999999999999999999999999999999
Q ss_pred CHHHHHHHHhhhhhhhh----hcCCCccceeecccccCCCchhhhHHHhhhccCCCCceecHHHHHHHHHHcCCcCc-ch
Q 038430 158 TIKDWQRILDSEMWKAE----EIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNA-EE 232 (677)
Q Consensus 158 ~~~~w~~~l~~~~~~~~----~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp~~~~i~~~~li~~wi~~g~i~~-~~ 232 (677)
+.++|+++.+...+... ...+.++.++++|||.|+. ++|.||+|||+||+|+.|.++.++.+|+||||+.+ ..
T Consensus 371 t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~--~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~ 448 (889)
T KOG4658|consen 371 TVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE--ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDG 448 (889)
T ss_pred cHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH--HHHHHHHhhccCCcccccchHHHHHHHHhccCcCcccc
Confidence 99999999986544422 1246789999999999996 99999999999999999999999999999999988 33
Q ss_pred hhhHHHhHHHHHHHHHHccCccccccCCCCCeeeEEeChhHHHHHHHHhc-----cccEEEEcC-CccccccccCCCceE
Q 038430 233 YEEKEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSS-----KECLWLEIN-STKESVINAFGGKVR 306 (677)
Q Consensus 233 ~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mhdli~d~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~l~ 306 (677)
+..++++|.+|+.+|++++++...... ++..+|+|||++|+||.+++. .++.+.... +....+....+..+|
T Consensus 449 ~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~r 526 (889)
T KOG4658|consen 449 GETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVR 526 (889)
T ss_pred ccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhhee
Confidence 667899999999999999999876654 667789999999999999999 555444432 233333334467899
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCC-CCccCCcc-cCCCCCcCEEEecCcc-ccccchhhccCCCcCEEE
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNS-SLDKIPEN-VGKLMHLKYLNLSELH-IERLPKTLCELYNLQKLD 383 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~-~~~~lp~~-~~~l~~L~~L~Ls~~~-i~~lp~~i~~l~~L~~L~ 383 (677)
++++.++.+..++.... ++.|++|.+.. +. .+..++.. |..|+.|++|||++|. +..+|.+|++|.+|++|+
T Consensus 527 r~s~~~~~~~~~~~~~~-~~~L~tLll~~----n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 527 RMSLMNNKIEHIAGSSE-NPKLRTLLLQR----NSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred EEEEeccchhhccCCCC-CCccceEEEee----cchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 99999998877775443 44799988886 22 25555543 6789999999999877 778999999999999999
Q ss_pred ecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 384 IRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 384 L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
++++. +..+|.++++|++|.+|++..+.....+|..+..|++|++|.+....... ....+.++.++.+|+.+.+..
T Consensus 602 L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~---~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 602 LSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN---DKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc---chhhHHhhhcccchhhheeec
Confidence 99887 88999999999999999999887766666656668899998887665111 145566666666666655543
Q ss_pred ccC-----CC----------------ChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcc
Q 038430 464 LSN-----VS----------------HLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYK 522 (677)
Q Consensus 464 ~~~-----~~----------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (677)
.+. +. .........+..+.+|+.|.+..+..-.....|.
T Consensus 678 ~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~-------------------- 737 (889)
T KOG4658|consen 678 SSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWE-------------------- 737 (889)
T ss_pred chhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccc--------------------
Confidence 221 00 0001122334556777777777662111000000
Q ss_pred cccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCC
Q 038430 523 EEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLP 595 (677)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~ 595 (677)
....... .++++.++.+.++.....+.|....++|+.|.+..|..++.+.
T Consensus 738 --------------------~~~~~~~---~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 738 --------------------ESLIVLL---CFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred --------------------cccchhh---hHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence 0000000 1345555555666666677777788888888888887665543
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-53 Score=501.16 Aligned_cols=591 Identities=18% Similarity=0.205 Sum_probs=391.3
Q ss_pred HHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHcCCccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchHHHH
Q 038430 12 ISVANAIIEGLGESTS-SLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNELVAR 90 (677)
Q Consensus 12 ~~i~~~i~~~l~~~~~-~~~~~~~~~~~i~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~v~~ 90 (677)
..+++++++++..... ..... ..++++|++||+||||||||+. ..|+.+.....+.++||+||||||+++++.
T Consensus 265 ~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~ 338 (1153)
T PLN03210 265 LHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLR 338 (1153)
T ss_pred HHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHH
Confidence 3466677766654321 11122 4578889999999999999986 788888887777889999999999999999
Q ss_pred hcCCCCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHHhccCCCHHHHHHHHhhhh
Q 038430 91 MMGSTNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEM 170 (677)
Q Consensus 91 ~~~~~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~~~~~~w~~~l~~~~ 170 (677)
.++++.+|+|+.|+++|||+||+++||+...+ ++++.+++++|+++|+|+||||+++|++|+++ +..+|+.++++..
T Consensus 339 ~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~--~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~ 415 (1153)
T PLN03210 339 AHGIDHIYEVCLPSNELALEMFCRSAFKKNSP--PDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLR 415 (1153)
T ss_pred hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 88888899999999999999999999987554 36789999999999999999999999999987 5899999998633
Q ss_pred hhhhhcCCCccceeecccccCCCchhhhHHHhhhccCCCCceecHHHHHHHHHHcCCcCcchhhhHHHhHHHHHHHHHHc
Q 038430 171 WKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEKEMTGEECFNILAAR 250 (677)
Q Consensus 171 ~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp~~~~i~~~~li~~wi~~g~i~~~~~~~~~~~~~~~~~~L~~~ 250 (677)
. ..+.++..+|++||+.|+.+ ..|.||+++|+|+.+..+ +.+..|.+.+.+.. ...++.|+++
T Consensus 416 ~---~~~~~I~~~L~~SYd~L~~~-~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~----------~~~l~~L~~k 478 (1153)
T PLN03210 416 N---GLDGKIEKTLRVSYDGLNNK-KDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV----------NIGLKNLVDK 478 (1153)
T ss_pred h---CccHHHHHHHHHhhhccCcc-chhhhhheehhhcCCCCH---HHHHHHHHhcCCCc----------hhChHHHHhc
Confidence 2 22457999999999999873 589999999999988654 33556666554321 2238899999
Q ss_pred cCccccccCCCCCeeeEEeChhHHHHHHHHhcccc--------EEEEcCCccccccccCCCceEEEEEEecCCCcc---c
Q 038430 251 SFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKEC--------LWLEINSTKESVINAFGGKVRHLGLKFKGGASF---P 319 (677)
Q Consensus 251 sll~~~~~~~~~~~~~~~mhdli~d~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~---p 319 (677)
++++... + .++|||++++|++.+++++. +|...+.......+....+++.+.+....+..+ +
T Consensus 479 sLi~~~~----~---~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~ 551 (1153)
T PLN03210 479 SLIHVRE----D---IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHE 551 (1153)
T ss_pred CCEEEcC----C---eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecH
Confidence 9997643 1 48999999999999987653 221110000011122345566666655444332 2
Q ss_pred ccccCCCcccEEEeCCCC--------------------------CCCCCCccCCcccCCCCCcCEEEecCccccccchhh
Q 038430 320 MSIHGLNRLRTLLIDDES--------------------------PPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTL 373 (677)
Q Consensus 320 ~~~~~l~~L~~L~l~~~~--------------------------l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i 373 (677)
.+|.+|++|+.|.+..+. +.+..+..+|..+ .+.+|+.|+++++.+..+|.++
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccc
Confidence 456667777777664321 0022344455544 3566777777777777777667
Q ss_pred ccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccC
Q 038430 374 CELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNF 453 (677)
Q Consensus 374 ~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l 453 (677)
..+++|+.|+|++|..+..+|. ++.+++|+.|++++|..+..+|..++++++|+.|++.++.... .++.-.++
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~------~Lp~~i~l 703 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE------ILPTGINL 703 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC------ccCCcCCC
Confidence 7777777777777666666665 6667777777777776677777777777777777776654332 11111145
Q ss_pred CcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcc-cccCCccccc
Q 038430 454 QLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYK-EEKGGKVVDG 532 (677)
Q Consensus 454 ~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 532 (677)
++|+.|.++++..+..++. ...+|+.|+++.+.... -|... ...........+.. +..++
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~-------~~~nL~~L~L~~n~i~~-lP~~~------~l~~L~~L~l~~~~~~~l~~----- 764 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPD-------ISTNISWLDLDETAIEE-FPSNL------RLENLDELILCEMKSEKLWE----- 764 (1153)
T ss_pred CCCCEEeCCCCCCcccccc-------ccCCcCeeecCCCcccc-ccccc------cccccccccccccchhhccc-----
Confidence 6666666666654433221 12456666666552111 00000 00000000000000 00000
Q ss_pred hhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCC-CCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeecccc
Q 038430 533 EYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGG-NILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHL 610 (677)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~ 610 (677)
............+++|+.|+|++|.. ..+|.+++++++|+.|+|++|..++.+|....++ |+.|++++|
T Consensus 765 ---------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c 835 (1153)
T PLN03210 765 ---------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGC 835 (1153)
T ss_pred ---------cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCC
Confidence 00000000112357899999999864 4699999999999999999999999999866889 999999999
Q ss_pred ccceEeCCcccc--CCCCCCCCCCCCCCCcccCCCccceeeeccccc-CccccccCCccccCCCccccc
Q 038430 611 KSVKRVGNEFLE--IEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE-GNYRITRKENISIIPRLSSLR 676 (677)
Q Consensus 611 ~~l~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~p~L~~L~ 676 (677)
..++.++..... .-...++.++ ..|.+...+++|+.|.+.+|++ ..++.. .. .+++|+.|+
T Consensus 836 ~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~--~~--~L~~L~~L~ 899 (1153)
T PLN03210 836 SRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLN--IS--KLKHLETVD 899 (1153)
T ss_pred CccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcc--cc--cccCCCeee
Confidence 988776532110 0001112222 3455677899999999999998 777654 22 566666554
|
syringae 6; Provisional |
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-32 Score=280.53 Aligned_cols=226 Identities=35% Similarity=0.585 Sum_probs=179.7
Q ss_pred CeEEecCCCCHHHHHHHHHHHhcCCCC---CCchHHHHHHHHHHHcCCccEEEEEECCcCCCccchhhhhhhhcCCCCCc
Q 038430 1 MWVCVSDTFEEISVANAIIEGLGESTS---SLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGS 77 (677)
Q Consensus 1 ~WV~vs~~~~~~~i~~~i~~~l~~~~~---~~~~~~~~~~~i~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS 77 (677)
+||++++..+..+++++|+++++.... ...+.++....+++.|+++++||||||||+. ..|+.+...++....||
T Consensus 53 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~ 130 (287)
T PF00931_consen 53 IWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGS 130 (287)
T ss_dssp EEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-
T ss_pred cccccccccccccccccccccccccccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccc
Confidence 599999999999999999999998854 3467888999999999999999999999987 68888888888877899
Q ss_pred EEEEEcCchHHHHhcCC-CCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHHhccC
Q 038430 78 KILVTTRNELVARMMGS-TNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSK 156 (677)
Q Consensus 78 ~IiiTTR~~~v~~~~~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~ 156 (677)
+||||||+..++..++. ...|+|++|+.+||++||++.++... ....+...+.+++|++.|+|+||||+++|++|+.+
T Consensus 131 kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~ 209 (287)
T PF00931_consen 131 KILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSK 209 (287)
T ss_dssp EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 99999999998887654 67899999999999999999998665 22235567789999999999999999999999766
Q ss_pred CCHHHHHHHHhhhhhhhhh---cCCCccceeecccccCCCchhhhHHHhhhccCCCCceecHHHHHHHHHHcCCcCcc
Q 038430 157 STIKDWQRILDSEMWKAEE---IGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAE 231 (677)
Q Consensus 157 ~~~~~w~~~l~~~~~~~~~---~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp~~~~i~~~~li~~wi~~g~i~~~ 231 (677)
.+..+|+.+++........ ....+..++.+||+.|++ ++|.||++||+||+++.++++.++.+|+++|+++..
T Consensus 210 ~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~--~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 210 STVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPD--ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT--CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccccccccccccccccccccccccccceechhcCCc--cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 5688999998764433321 235688899999999999 899999999999999999999999999999998654
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-22 Score=236.68 Aligned_cols=155 Identities=21% Similarity=0.265 Sum_probs=76.6
Q ss_pred CCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccc-ccchhhccCCCcCEEEecCCCCccccCccccccccc
Q 038430 325 LNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE-RLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNM 403 (677)
Q Consensus 325 l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L 403 (677)
+++|++|++++ +.....+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|
T Consensus 139 l~~L~~L~Ls~----n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 139 IPNLETLDLSN----NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred cCCCCEEECcC----CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 44444444443 2222344555555555555555555544 445555555555555555555444555555555555
Q ss_pred ceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcc
Q 038430 404 RSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMEN 483 (677)
Q Consensus 404 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~ 483 (677)
++|++++|...+.+|..++++++|++|++.++... ...+..+.++++|+.|.+..+.. ....+..+.++++
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~ 285 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT-----GPIPSSLGNLKNLQYLFLYQNKL----SGPIPPSIFSLQK 285 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceec-----cccChhHhCCCCCCEEECcCCee----eccCchhHhhccC
Confidence 55555555444455555555555555555544433 22333455555555555544221 1111223344555
Q ss_pred cCceEEEee
Q 038430 484 LLHLYLWFE 492 (677)
Q Consensus 484 L~~L~l~~~ 492 (677)
|+.|++++|
T Consensus 286 L~~L~Ls~n 294 (968)
T PLN00113 286 LISLDLSDN 294 (968)
T ss_pred cCEEECcCC
Confidence 555555544
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.7e-22 Score=234.92 Aligned_cols=333 Identities=18% Similarity=0.139 Sum_probs=216.5
Q ss_pred CCceEEEEEEecCCC-cccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccc-ccchhhccCCCc
Q 038430 302 GGKVRHLGLKFKGGA-SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE-RLPKTLCELYNL 379 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~l~~L 379 (677)
...++.|++++|.+. .+|..+..+++|++|++++ +.....+|..++++++|++|++++|.+. .+|..++++++|
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~----n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG----NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECcc----CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 567888999888875 5677888899999999986 4444567888888999999999998876 678888899999
Q ss_pred CEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcc
Q 038430 380 QKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKC 459 (677)
Q Consensus 380 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L 459 (677)
++|++++|.....+|..++++++|++|++++|...+.+|..++++++|++|++.++... ...+..+.++.+|+.|
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L 289 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS-----GPIPPSIFSLQKLISL 289 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee-----ccCchhHhhccCcCEE
Confidence 99999988866688888889999999999988766678888888889998888877654 2345567777888888
Q ss_pred cccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhc
Q 038430 460 GIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRR 539 (677)
Q Consensus 460 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (677)
+++++.. ....+..+..+++|+.|++++|......|.+... ......... .
T Consensus 290 ~Ls~n~l----~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-------------l~~L~~L~L-----------~- 340 (968)
T PLN00113 290 DLSDNSL----SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-------------LPRLQVLQL-----------W- 340 (968)
T ss_pred ECcCCee----ccCCChhHcCCCCCcEEECCCCccCCcCChhHhc-------------CCCCCEEEC-----------c-
Confidence 8876432 2223334567788888888776222111100000 000000000 0
Q ss_pred chhhHHHHhhhcCCCCCCcEEEEecCCCC-CCChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccceEe
Q 038430 540 KNEKDEQLLEALQPPLNVEKLWILFNGGN-ILPKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVKRV 616 (677)
Q Consensus 540 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~~i 616 (677)
.+.....++..+..+++|+.|++++|.+. .+|.++..+++|+.|++.+|.....+|. ++.++ |+.|++.+|.--..+
T Consensus 341 ~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~ 420 (968)
T PLN00113 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420 (968)
T ss_pred CCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence 00111123334555677777777777665 4677777777777777777755555554 67778 888888875432233
Q ss_pred CCcccc-----CCCCCCCCCCCCCCCcccCCCccceeeeccccc-CccccccCCccccCCCcccccC
Q 038430 617 GNEFLE-----IEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE-GNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 617 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~p~L~~L~i 677 (677)
+..+.. .-...++.++|..+.....+++|+.|++++|.. ..++.. - ..++|++|++
T Consensus 421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~--~---~~~~L~~L~l 482 (968)
T PLN00113 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS--F---GSKRLENLDL 482 (968)
T ss_pred ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc--c---ccccceEEEC
Confidence 222211 111224455666665556677777777777765 444322 1 3466666654
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-22 Score=208.54 Aligned_cols=151 Identities=23% Similarity=0.283 Sum_probs=91.4
Q ss_pred CceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEE
Q 038430 303 GKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKL 382 (677)
Q Consensus 303 ~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L 382 (677)
.++.+|++.+|.+..+...+..++.||.+.+.+|.+.++ .+|..+.+|..|..||||+|+++..|..+..-.++-+|
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKns---GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNS---GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccC---CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 456667777776666666666666677766665433332 34555666666666666666666666666666666666
Q ss_pred EecCCCCccccCcc-cccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 383 DIRGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 383 ~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
+|++|. +..+|.. +-+|+-|-.|++++| .+..+|+.+..|..|++|.++++... ...+..|..|+.|..|.+
T Consensus 132 NLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~-----hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 132 NLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLN-----HFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred EcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhh-----HHHHhcCccchhhhhhhc
Confidence 666665 6666653 445666666666666 46666666666666666666655544 334444555555554444
Q ss_pred cC
Q 038430 462 EG 463 (677)
Q Consensus 462 ~~ 463 (677)
++
T Consensus 205 s~ 206 (1255)
T KOG0444|consen 205 SN 206 (1255)
T ss_pred cc
Confidence 43
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-19 Score=184.17 Aligned_cols=242 Identities=20% Similarity=0.254 Sum_probs=158.8
Q ss_pred CCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccc-hhhccCCC
Q 038430 302 GGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLP-KTLCELYN 378 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp-~~i~~l~~ 378 (677)
.++++.|.+.+|.+.++. +.+..++-||+|+|+. +.+..+|. ++..-.++++|+|++|.|+.+- ..|.++.+
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr-----N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR-----NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS 198 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhh-----chhhcccCCCCCCCCCceEEeeccccccccccccccccch
Confidence 456777777777776664 5666677778887774 44555552 3455568888888888888663 34778888
Q ss_pred cCEEEecCCCCccccCc-ccccccccceeecCccCCCccc-CCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcC
Q 038430 379 LQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYM-PIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLI 456 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L 456 (677)
|.+|.|+.|+ +..+|. .|.+|++|+.|++..| .++.+ -..|..|.+|+.|.+..+++.. ..-..+-.+.++
T Consensus 199 L~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~k-----L~DG~Fy~l~km 271 (873)
T KOG4194|consen 199 LLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISK-----LDDGAFYGLEKM 271 (873)
T ss_pred heeeecccCc-ccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCccc-----ccCcceeeeccc
Confidence 8888888888 777776 4566888888888888 45544 3457788888888887776652 223344456666
Q ss_pred CcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhh
Q 038430 457 RKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEE 536 (677)
Q Consensus 457 ~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (677)
+.|++.. +.+.......+.++..|+.|++++|-..+
T Consensus 272 e~l~L~~----N~l~~vn~g~lfgLt~L~~L~lS~NaI~r---------------------------------------- 307 (873)
T KOG4194|consen 272 EHLNLET----NRLQAVNEGWLFGLTSLEQLDLSYNAIQR---------------------------------------- 307 (873)
T ss_pred ceeeccc----chhhhhhcccccccchhhhhccchhhhhe----------------------------------------
Confidence 7777765 44555556677888889999998872211
Q ss_pred hhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChh-HhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccc
Q 038430 537 RRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKW-LTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCH 609 (677)
Q Consensus 537 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~ 609 (677)
.-.+++.-.++|+.|+|+.|.+.++|+. +..|+.|+.|.|++| .+..+.. +..+. |++|+|++
T Consensus 308 ---------ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 308 ---------IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred ---------eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcC
Confidence 1234455567788888888887777543 445556666666555 3333332 33344 44444443
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-21 Score=195.73 Aligned_cols=250 Identities=20% Similarity=0.240 Sum_probs=193.1
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccc--ccchhhccCCCc
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE--RLPKTLCELYNL 379 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~--~lp~~i~~l~~L 379 (677)
+.++++|.+....+..+|..+..+.+|..|.+.+ +.+.++...+..++.||.+.++.|+++ .+|+.|-.+..|
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~H-----N~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL 105 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAH-----NQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL 105 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhh-----hhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccc
Confidence 4567888888888888998888889999988884 455666667888999999999999987 689999999999
Q ss_pred CEEEecCCCCccccCcccccccccceeecCccCCCcccCCc-CCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCc
Q 038430 380 QKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRK 458 (677)
Q Consensus 380 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~ 458 (677)
.+|||++|. +.+.|..+..-+++-.|++++| .+..+|.. +-+|+-|-.|+++++.... .++..+.|.+|++
T Consensus 106 t~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~------LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 106 TILDLSHNQ-LREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEM------LPPQIRRLSMLQT 177 (1255)
T ss_pred eeeecchhh-hhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhh------cCHHHHHHhhhhh
Confidence 999999998 9999999999999999999999 68888866 5688999999999887654 6677888888999
Q ss_pred ccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhh
Q 038430 459 CGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERR 538 (677)
Q Consensus 459 L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (677)
|.+++ +.+..+....+..|..|+.|.+++.
T Consensus 178 L~Ls~----NPL~hfQLrQLPsmtsL~vLhms~T---------------------------------------------- 207 (1255)
T KOG0444|consen 178 LKLSN----NPLNHFQLRQLPSMTSLSVLHMSNT---------------------------------------------- 207 (1255)
T ss_pred hhcCC----ChhhHHHHhcCccchhhhhhhcccc----------------------------------------------
Confidence 99887 4455555566777788888888765
Q ss_pred cchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccceEe
Q 038430 539 RKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVKRV 616 (677)
Q Consensus 539 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~~i 616 (677)
+.....++.++..+.||..++++.|.+..+|..+..+++|+.|+|++| .++.+.. .+.-. |+.|+++. ++|+.+
T Consensus 208 --qRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~L 283 (1255)
T KOG0444|consen 208 --QRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVL 283 (1255)
T ss_pred --cchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccc
Confidence 223344555666667777888888877777877778888888888777 4444432 22333 66666665 555555
Q ss_pred CC
Q 038430 617 GN 618 (677)
Q Consensus 617 ~~ 618 (677)
+.
T Consensus 284 P~ 285 (1255)
T KOG0444|consen 284 PD 285 (1255)
T ss_pred hH
Confidence 43
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-18 Score=203.48 Aligned_cols=274 Identities=22% Similarity=0.283 Sum_probs=166.6
Q ss_pred CCCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcc-ccccchhhccCCCc
Q 038430 301 FGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELH-IERLPKTLCELYNL 379 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~-i~~lp~~i~~l~~L 379 (677)
++.+++.|.+.++.+..+|..+ ...+|+.|++.+ +.+..+|..+..+++|++|+|+++. ++.+| .++.+++|
T Consensus 587 lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~-----s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~L 659 (1153)
T PLN03210 587 LPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQG-----SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNL 659 (1153)
T ss_pred cCcccEEEEecCCCCCCCCCcC-CccCCcEEECcC-----ccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcc
Confidence 3556777777777777777555 356777777763 3455566666666677777776654 44554 36666677
Q ss_pred CEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCC---------------------C
Q 038430 380 QKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGG---------------------G 438 (677)
Q Consensus 380 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~---------------------~ 438 (677)
++|++++|..+..+|..++++++|+.|++++|..+..+|..+ ++++|+.|++.++.. .
T Consensus 660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE 738 (1153)
T ss_pred cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc
Confidence 777777666666666666666677777776666666666544 455555555544321 1
Q ss_pred cCCCCcccccccc-------------------------cCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeec
Q 038430 439 VDGGSTCRLECLK-------------------------NFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEV 493 (677)
Q Consensus 439 ~~~~~~~~~~~L~-------------------------~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 493 (677)
..+.. ..+..|. ...+|+.|.++++.....+ +..+.++++|+.|++++|.
T Consensus 739 ~lP~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l----P~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 739 EFPSN-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL----PSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred ccccc-ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcccc----ChhhhCCCCCCEEECCCCC
Confidence 11000 0000000 0124555666655433333 3346788999999998772
Q ss_pred CCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhc-CCCCCCcEEEEecCCCCCCCh
Q 038430 494 VDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEAL-QPPLNVEKLWILFNGGNILPK 572 (677)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~lp~ 572 (677)
.....|... ........ .++. .. .+..+ ..+++|+.|+|++|.+..+|.
T Consensus 814 ~L~~LP~~~--------------~L~sL~~L----~Ls~-------c~-----~L~~~p~~~~nL~~L~Ls~n~i~~iP~ 863 (1153)
T PLN03210 814 NLETLPTGI--------------NLESLESL----DLSG-------CS-----RLRTFPDISTNISDLNLSRTGIEEVPW 863 (1153)
T ss_pred CcCeeCCCC--------------CccccCEE----ECCC-------CC-----ccccccccccccCEeECCCCCCccChH
Confidence 211111000 00000000 0000 00 00111 124689999999999999999
Q ss_pred hHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccceEeC
Q 038430 573 WLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVKRVG 617 (677)
Q Consensus 573 ~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~~i~ 617 (677)
++..+++|+.|+|.+|..++.+|. ...++ |+.|++++|.+|+.+.
T Consensus 864 si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 864 WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 999999999999999999998886 67889 9999999999998664
|
syringae 6; Provisional |
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-18 Score=176.84 Aligned_cols=314 Identities=20% Similarity=0.219 Sum_probs=196.7
Q ss_pred CCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccc-hhhccCCC
Q 038430 301 FGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLP-KTLCELYN 378 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~l~~ 378 (677)
++...+.|++++|.+..+. ..|.++++|+.+++. .+.+..+|...+-..||+.|+|.+|.|+++. +.++.++.
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~-----~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLN-----KNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPA 150 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeec-----cchhhhcccccccccceeEEeeeccccccccHHHHHhHhh
Confidence 3667778888888776653 566778888888886 4566777765555666888888888777553 34777777
Q ss_pred cCEEEecCCCCccccCc-ccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcC
Q 038430 379 LQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLI 456 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L 456 (677)
|+.|||+.|. +.++|. .+..-.++++|++++|. ++.+- ..|..+.+|.+|.+..+... ......+++|++|
T Consensus 151 lrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrit-----tLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 151 LRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRIT-----TLPQRSFKRLPKL 223 (873)
T ss_pred hhhhhhhhch-hhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCccc-----ccCHHHhhhcchh
Confidence 8888888776 666664 35555677777777773 44433 34666777777777776665 3455566666666
Q ss_pred CcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCC-cccccCCccccchhh
Q 038430 457 RKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGG-YKEEKGGKVVDGEYE 535 (677)
Q Consensus 457 ~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 535 (677)
+.|.+.. +.+.......+.++++|+.|.+..|+....+ ++- |..+++. . .
T Consensus 224 ~~LdLnr----N~irive~ltFqgL~Sl~nlklqrN~I~kL~-------------------DG~Fy~l~kme-~-----l 274 (873)
T KOG4194|consen 224 ESLDLNR----NRIRIVEGLTFQGLPSLQNLKLQRNDISKLD-------------------DGAFYGLEKME-H-----L 274 (873)
T ss_pred hhhhccc----cceeeehhhhhcCchhhhhhhhhhcCccccc-------------------Ccceeeecccc-e-----e
Confidence 6666654 2232333344555555555555544221100 000 1111100 0 0
Q ss_pred hhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCC-ChhHhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccccc
Q 038430 536 ERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNIL-PKWLTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHLK 611 (677)
Q Consensus 536 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~~ 611 (677)
..+ .+.....--+.+-.++.|+.|+++.|.+..+ ++.....++|+.|+|++| .++.++. +..|. |++|+|++ +
T Consensus 275 ~L~-~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-N 351 (873)
T KOG4194|consen 275 NLE-TNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-N 351 (873)
T ss_pred ecc-cchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-c
Confidence 000 0001111122344568899999999998865 556678899999999988 7777775 77888 99999997 7
Q ss_pred cceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeecccccCcccccc-CCccccCCCcccccC
Q 038430 612 SVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITR-KENISIIPRLSSLRI 677 (677)
Q Consensus 612 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~p~L~~L~i 677 (677)
++..+.+..+ ..+.+|++|+++.+. -.|.+++ ...+..||+|+.|++
T Consensus 352 si~~l~e~af------------------~~lssL~~LdLr~N~-ls~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 352 SIDHLAEGAF------------------VGLSSLHKLDLRSNE-LSWCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred chHHHHhhHH------------------HHhhhhhhhcCcCCe-EEEEEecchhhhccchhhhheee
Confidence 7877755443 577899999998754 3444442 233346888888864
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.5e-19 Score=172.07 Aligned_cols=300 Identities=21% Similarity=0.255 Sum_probs=214.1
Q ss_pred ceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEE
Q 038430 304 KVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLD 383 (677)
Q Consensus 304 ~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~ 383 (677)
.+..+..+++.+..+|+.+.....++.|+.+ .+.+..+|++++.+..|..|+..+|++.++|+++.++..|..|+
T Consensus 92 ~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s-----~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~ 166 (565)
T KOG0472|consen 92 ALKSLNVSHNKLSELPEQIGSLISLVKLDCS-----SNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLD 166 (565)
T ss_pred HHHHhhcccchHhhccHHHhhhhhhhhhhcc-----ccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhh
Confidence 3445566666666666666666666666666 45667788888888889999998899999999988889999999
Q ss_pred ecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 384 IRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 384 L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
+.+|. +..+|+..-.|+.|++|+...| .++.+|+.++.|.+|.-|++..+... .++++..+..|..|.+..
T Consensus 167 ~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~-------~lPef~gcs~L~Elh~g~ 237 (565)
T KOG0472|consen 167 LEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIR-------FLPEFPGCSLLKELHVGE 237 (565)
T ss_pred ccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccc-------cCCCCCccHHHHHHHhcc
Confidence 99888 8888877667999999999888 78899999999999999999888765 455777777788777765
Q ss_pred ccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhh
Q 038430 464 LSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEK 543 (677)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (677)
+.+.......++.+++|..|++..| .
T Consensus 238 ----N~i~~lpae~~~~L~~l~vLDLRdN--------------------------------------------------k 263 (565)
T KOG0472|consen 238 ----NQIEMLPAEHLKHLNSLLVLDLRDN--------------------------------------------------K 263 (565)
T ss_pred ----cHHHhhHHHHhcccccceeeecccc--------------------------------------------------c
Confidence 3344444455668899999999877 2
Q ss_pred HHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCC-------------------------------
Q 038430 544 DEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCE------------------------------- 592 (677)
Q Consensus 544 ~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~------------------------------- 592 (677)
..+.+..+..+++|++|++++|.++.+|..++++ .|+.|.+.||+.-+
T Consensus 264 lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~ 342 (565)
T KOG0472|consen 264 LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG 342 (565)
T ss_pred cccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence 3445556666789999999999999999999999 89999999985210
Q ss_pred ------cCCC-----CCCcc-cceeeccccccceEeCCccccCCC---CCCCCC--------------------------
Q 038430 593 ------QLPP-----LGKLP-LEKLELCHLKSVKRVGNEFLEIEE---SEDDPS-------------------------- 631 (677)
Q Consensus 593 ------~l~~-----l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~---~~~~~~-------------------------- 631 (677)
..|. ...+- .+.|++++ .+++.++.+.+.+.. +..-++
T Consensus 343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsn 421 (565)
T KOG0472|consen 343 GTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSN 421 (565)
T ss_pred cccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhc
Confidence 0000 01122 66677775 567777765544433 111112
Q ss_pred --CCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 632 --SSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 632 --~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
=|-.+.-...|++|..|++++..-..+|.. .+ ++-.||+|+|
T Consensus 422 n~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e--~~--~lv~Lq~Lnl 465 (565)
T KOG0472|consen 422 NKISFVPLELSQLQKLTFLDLSNNLLNDLPEE--MG--SLVRLQTLNL 465 (565)
T ss_pred CccccchHHHHhhhcceeeecccchhhhcchh--hh--hhhhhheecc
Confidence 222333445678888888887766556554 33 5667777764
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-17 Score=163.90 Aligned_cols=121 Identities=26% Similarity=0.377 Sum_probs=58.6
Q ss_pred ceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhc-cCCCcCEE
Q 038430 304 KVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLC-ELYNLQKL 382 (677)
Q Consensus 304 ~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~-~l~~L~~L 382 (677)
.+.+++...|..+.+|+.++.+.+|..|++. .+.+..+| +|+++..|..|.++.|.|..+|...+ ++.+|.+|
T Consensus 184 ~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~-----~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 184 RLKHLDCNSNLLETLPPELGGLESLELLYLR-----RNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHhcccchhhhhcCChhhcchhhhHHHHhh-----hcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceee
Confidence 4444555555555555555555555555554 23344444 34444445555555554444444433 44555555
Q ss_pred EecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCce
Q 038430 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKF 433 (677)
Q Consensus 383 ~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~ 433 (677)
||++|+ ++++|+.+..+.+|.+||+++| .+..+|.++|++ .|+.|.+.
T Consensus 258 DLRdNk-lke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~le 305 (565)
T KOG0472|consen 258 DLRDNK-LKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALE 305 (565)
T ss_pred eccccc-cccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhc
Confidence 555544 5555555555555555555544 344444445544 44444433
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-16 Score=171.57 Aligned_cols=227 Identities=24% Similarity=0.281 Sum_probs=171.4
Q ss_pred CCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCc
Q 038430 353 LMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDK 432 (677)
Q Consensus 353 l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l 432 (677)
-.+|++++++++++..+|..++.+.+|+.+++.+|. +..+|..+..+++|+.|.+..| .+..+|+..+.+++|++|++
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeee
Confidence 357899999999999999889999999999999988 7999999999999999999999 68889998889999999999
Q ss_pred eeeCCCcCCCCcccccccccCCc-CCcccccCccC--------------------CCChhHHHHhhccCCcccCceEEEe
Q 038430 433 FAVGGGVDGGSTCRLECLKNFQL-IRKCGIEGLSN--------------------VSHLDEAERLELKNMENLLHLYLWF 491 (677)
Q Consensus 433 ~~~~~~~~~~~~~~~~~L~~l~~-L~~L~i~~~~~--------------------~~~~~~~~~~~l~~~~~L~~L~l~~ 491 (677)
..+.....+. ..+..+.. |+.|+.+.... -+.+.+.....+.++++|+.|+|++
T Consensus 318 ~~N~L~~lp~-----~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 318 QSNNLPSLPD-----NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY 392 (1081)
T ss_pred hhccccccch-----HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc
Confidence 9887664332 11111111 22222221100 0333344445577889999999998
Q ss_pred ecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCC
Q 038430 492 EVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILP 571 (677)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp 571 (677)
|.... .-...+..+..|++|+|+||.+.++|
T Consensus 393 NrL~~-------------------------------------------------fpas~~~kle~LeeL~LSGNkL~~Lp 423 (1081)
T KOG0618|consen 393 NRLNS-------------------------------------------------FPASKLRKLEELEELNLSGNKLTTLP 423 (1081)
T ss_pred ccccc-------------------------------------------------CCHHHHhchHHhHHHhcccchhhhhh
Confidence 82221 11123456678899999999999999
Q ss_pred hhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeee
Q 038430 572 KWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEI 650 (677)
Q Consensus 572 ~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 650 (677)
+.+..++.|++|...+| .+..+|.+.++| |+.++++ |++|+.+..... ..-|+|+.|++
T Consensus 424 ~tva~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~------------------~p~p~LkyLdl 483 (1081)
T KOG0618|consen 424 DTVANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEA------------------LPSPNLKYLDL 483 (1081)
T ss_pred HHHHhhhhhHHHhhcCC-ceeechhhhhcCcceEEecc-cchhhhhhhhhh------------------CCCcccceeec
Confidence 99999999999999877 788899999999 9999998 788888754332 22389999999
Q ss_pred ccccc
Q 038430 651 KELEE 655 (677)
Q Consensus 651 ~~~~~ 655 (677)
+++..
T Consensus 484 SGN~~ 488 (1081)
T KOG0618|consen 484 SGNTR 488 (1081)
T ss_pred cCCcc
Confidence 99773
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-16 Score=171.95 Aligned_cols=243 Identities=21% Similarity=0.208 Sum_probs=156.0
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
+..+..++++++....+|.++..+.+|..+...+ +.+..+|..+..+..|++|++.+|.+..+|+...++..|++
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~-----N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANH-----NRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRT 314 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccc-----hhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeee
Confidence 4455566666666655665556666666665552 33455555555566666666666666666655555666666
Q ss_pred EEecCCCCccccCccccc-cc-ccceeecCccCCCcccCCc-CCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCc
Q 038430 382 LDIRGCRNLRELPTGIGK-LK-NMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRK 458 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~-l~-~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~ 458 (677)
|+|..|. +..+|+.+-. +. .|+.|+.+.| .+...|.. -.....|+.|++.++... ...+..|.++.+|+.
T Consensus 315 LdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~~~e~~~~~Lq~LylanN~Lt-----d~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 315 LDLQSNN-LPSLPDNFLAVLNASLNTLNVSSN-KLSTLPSYEENNHAALQELYLANNHLT-----DSCFPVLVNFKHLKV 387 (1081)
T ss_pred eeehhcc-ccccchHHHhhhhHHHHHHhhhhc-cccccccccchhhHHHHHHHHhcCccc-----ccchhhhccccceee
Confidence 6666655 5555553222 11 1444444444 23333311 123455677777776665 445667888888999
Q ss_pred ccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhh
Q 038430 459 CGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERR 538 (677)
Q Consensus 459 L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (677)
|+++. +.+..+....+.++..|+.|+|++|
T Consensus 388 LhLsy----NrL~~fpas~~~kle~LeeL~LSGN---------------------------------------------- 417 (1081)
T KOG0618|consen 388 LHLSY----NRLNSFPASKLRKLEELEELNLSGN---------------------------------------------- 417 (1081)
T ss_pred eeecc----cccccCCHHHHhchHHhHHHhcccc----------------------------------------------
Confidence 99887 4444445566788899999999998
Q ss_pred cchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCc--CCCCCCcc-cceeecccccc
Q 038430 539 RKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQ--LPPLGKLP-LEKLELCHLKS 612 (677)
Q Consensus 539 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~--l~~l~~l~-L~~L~l~~~~~ 612 (677)
....++..+..++.|+.|...+|.+..+| -+..++.|+.++++.| .+.. +|..-.-| |++|++++...
T Consensus 418 ----kL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 418 ----KLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred ----hhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence 33445566677889999999999999999 7899999999999876 4432 33222227 99999998554
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.9e-14 Score=156.49 Aligned_cols=115 Identities=25% Similarity=0.411 Sum_probs=52.0
Q ss_pred eEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEe
Q 038430 305 VRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDI 384 (677)
Q Consensus 305 l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L 384 (677)
...|.+.++++..+|..+. ++|+.|++++ +.+..+|..+. .+|++|++++|.++.+|..+. .+|+.|+|
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~-----N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L 248 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDN-----NELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMEL 248 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecC-----CCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEEC
Confidence 3445555544444443332 3455555542 23334444332 345555555555555544332 24555555
Q ss_pred cCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeC
Q 038430 385 RGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVG 436 (677)
Q Consensus 385 ~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 436 (677)
++|. +..+|..+. ++|+.|++++| .+..+|..+. .+|+.|++.++.
T Consensus 249 s~N~-L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~ 294 (754)
T PRK15370 249 SINR-ITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNS 294 (754)
T ss_pred cCCc-cCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCc
Confidence 5554 444544332 34555555544 3334444332 245555544443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-15 Score=133.49 Aligned_cols=186 Identities=26% Similarity=0.303 Sum_probs=125.3
Q ss_pred cCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCc
Q 038430 350 VGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRT 429 (677)
Q Consensus 350 ~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 429 (677)
+..+.+...|.||+|+++.+|+.|..+.+|+.|++.+|. ++++|.+++.|++|++|+++-| .+..+|.++|.+..|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhh
Confidence 345566667777777777777777777777777777777 7777777777777877777766 56667777777777777
Q ss_pred cCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCccccccccccc
Q 038430 430 LDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENED 509 (677)
Q Consensus 430 L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 509 (677)
|++.++.... ...+ .++-.|..|+-|+++.|
T Consensus 107 ldltynnl~e----~~lp----------------------------gnff~m~tlralyl~dn----------------- 137 (264)
T KOG0617|consen 107 LDLTYNNLNE----NSLP----------------------------GNFFYMTTLRALYLGDN----------------- 137 (264)
T ss_pred hhcccccccc----ccCC----------------------------cchhHHHHHHHHHhcCC-----------------
Confidence 7776655432 1111 12233445555566544
Q ss_pred CCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCC
Q 038430 510 EGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCE 589 (677)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~ 589 (677)
.-+.++..++.+++|+.|.++.|.+.++|.-++.+..|+.|++.+|
T Consensus 138 ---------------------------------dfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn- 183 (264)
T KOG0617|consen 138 ---------------------------------DFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN- 183 (264)
T ss_pred ---------------------------------CcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc-
Confidence 1233445566778888999999988899999999999999999988
Q ss_pred CCCcCCC-CCCcc----cceeeccccccceEeCCcc
Q 038430 590 NCEQLPP-LGKLP----LEKLELCHLKSVKRVGNEF 620 (677)
Q Consensus 590 ~~~~l~~-l~~l~----L~~L~l~~~~~l~~i~~~~ 620 (677)
.++.+|+ ++++. =+...+.+.+-+..|.++|
T Consensus 184 rl~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf 219 (264)
T KOG0617|consen 184 RLTVLPPELANLDLVGNKQVMRMEENPWVNPIAEQF 219 (264)
T ss_pred eeeecChhhhhhhhhhhHHHHhhhhCCCCChHHHHH
Confidence 6666664 55544 2345555555555554443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-15 Score=131.76 Aligned_cols=150 Identities=21% Similarity=0.304 Sum_probs=134.3
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
...+++|.+++|.+..+|..+..+.+|++|+++ ++.++.+|.+++.++.|+.|+++-|++..+|.+|+.++.|++
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~-----nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLS-----NNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcc-----cchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 567889999999999999999999999999998 678899999999999999999999999999999999999999
Q ss_pred EEecCCCCc-cccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccc
Q 038430 382 LDIRGCRNL-RELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCG 460 (677)
Q Consensus 382 L~L~~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 460 (677)
|||.+|..- ..+|..+..|+.|+.|+++.| ....+|..++++++||.|.+..+...+ .+.+++.++.|+.|.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~------lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLS------LPKEIGDLTRLRELH 179 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhh------CcHHHHHHHHHHHHh
Confidence 999988732 568999999999999999999 677899999999999999988877644 667788888888888
Q ss_pred ccC
Q 038430 461 IEG 463 (677)
Q Consensus 461 i~~ 463 (677)
|-+
T Consensus 180 iqg 182 (264)
T KOG0617|consen 180 IQG 182 (264)
T ss_pred ccc
Confidence 876
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=145.17 Aligned_cols=236 Identities=19% Similarity=0.162 Sum_probs=122.6
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
+..++.|++.+|.+..+|.. +++|++|++++ +.+..+|.. .++|+.|++++|.++.+|... .+|+.
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~-----N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~ 286 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPAL---PPELRTLEVSG-----NQLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCK 286 (788)
T ss_pred hcCCCEEEccCCcCCCCCCC---CCCCcEEEecC-----CccCcccCc---ccccceeeccCCchhhhhhch---hhcCE
Confidence 44566666666666666632 45666666664 334444432 245666666666666555422 44666
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++++|. +..+|.. +++|+.|++++| .+..+|... .+|+.|++.++..... +.+ ..+|+.|++
T Consensus 287 L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~lp---~~L~~L~Ls~N~L~~L-------P~l--p~~Lq~LdL 349 (788)
T PRK15387 287 LWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPALP---SELCKLWAYNNQLTSL-------PTL--PSGLQELSV 349 (788)
T ss_pred EECcCCc-ccccccc---ccccceeECCCC-ccccCCCCc---ccccccccccCccccc-------ccc--ccccceEec
Confidence 6666665 5556542 355666666666 344454322 2344455544433321 111 123555555
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcch
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKN 541 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (677)
++.. +..++. ...+|+.|+++.|...
T Consensus 350 S~N~-Ls~LP~-------lp~~L~~L~Ls~N~L~---------------------------------------------- 375 (788)
T PRK15387 350 SDNQ-LASLPT-------LPSELYKLWAYNNRLT---------------------------------------------- 375 (788)
T ss_pred CCCc-cCCCCC-------CCcccceehhhccccc----------------------------------------------
Confidence 4421 111111 0134455555444100
Q ss_pred hhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCcc
Q 038430 542 EKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEF 620 (677)
Q Consensus 542 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~ 620 (677)
.++. .+++|+.|++++|.+..+|.. .++|+.|++++| .+..+|.+ .. |+.|++++ +.++.++..+
T Consensus 376 ----~LP~---l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~-NqLt~LP~sl 441 (788)
T PRK15387 376 ----SLPA---LPSGLKELIVSGNRLTSLPVL---PSELKELMVSGN-RLTSLPML--PSGLLSLSVYR-NQLTRLPESL 441 (788)
T ss_pred ----cCcc---cccccceEEecCCcccCCCCc---ccCCCEEEccCC-cCCCCCcc--hhhhhhhhhcc-CcccccChHH
Confidence 0110 124677777777777766643 356777777777 45556632 23 77777765 5566554432
Q ss_pred ccCCCCCCCCCCCCCCCcccCCCccceeeeccccc
Q 038430 621 LEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
..+++|+.|++++++-
T Consensus 442 -------------------~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 442 -------------------IHLSSETTVNLEGNPL 457 (788)
T ss_pred -------------------hhccCCCeEECCCCCC
Confidence 3466677777766655
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.7e-13 Score=149.66 Aligned_cols=223 Identities=21% Similarity=0.221 Sum_probs=161.2
Q ss_pred CCCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcC
Q 038430 301 FGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQ 380 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~ 380 (677)
++..++.|++.+|.+..+|..+. ++|++|++++ +.+..+|..+. .+|+.|+|++|.+..+|..+. .+|+
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~-----N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~ 265 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENLQ--GNIKTLYANS-----NQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQ 265 (754)
T ss_pred cccCCcEEEecCCCCCcCChhhc--cCCCEEECCC-----CccccCChhhh--ccccEEECcCCccCcCChhHh--CCCC
Confidence 46789999999999999996654 5899999995 44567777653 479999999999999998775 5899
Q ss_pred EEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccc
Q 038430 381 KLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCG 460 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 460 (677)
.|++++|. +..+|..+. ++|+.|++++| .+..+|..+. .+|+.|++.++.....+ ..+ ..+|+.|.
T Consensus 266 ~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP------~~l--~~sL~~L~ 331 (754)
T PRK15370 266 SLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNSLTALP------ETL--PPGLKTLE 331 (754)
T ss_pred EEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcCCccccCC------ccc--cccceecc
Confidence 99999887 888998664 58999999999 5667886553 47888888877655311 111 24577777
Q ss_pred ccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcc
Q 038430 461 IEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRK 540 (677)
Q Consensus 461 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (677)
+.++. +..++. .+ .++|+.|++++|....
T Consensus 332 Ls~N~-Lt~LP~----~l--~~sL~~L~Ls~N~L~~-------------------------------------------- 360 (754)
T PRK15370 332 AGENA-LTSLPA----SL--PPELQVLDVSKNQITV-------------------------------------------- 360 (754)
T ss_pred ccCCc-cccCCh----hh--cCcccEEECCCCCCCc--------------------------------------------
Confidence 76643 222222 12 2689999998872111
Q ss_pred hhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCC-----CCCcc-cceeecccc
Q 038430 541 NEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPP-----LGKLP-LEKLELCHL 610 (677)
Q Consensus 541 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~-----l~~l~-L~~L~l~~~ 610 (677)
++..+ +++|+.|+|++|.+..+|..+. .+|+.|++++| .+..+|. .+.+| +..|++.+.
T Consensus 361 ------LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 361 ------LPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred ------CChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCC
Confidence 11122 3589999999999988988765 36889999988 5556663 34457 888888873
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-12 Score=144.10 Aligned_cols=251 Identities=19% Similarity=0.159 Sum_probs=173.9
Q ss_pred CceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEE
Q 038430 303 GKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKL 382 (677)
Q Consensus 303 ~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L 382 (677)
..-..|+++.+.+..+|..+. ++|+.|.+.+ +.+..+|.. +++|++|++++|.++.+|.. .++|+.|
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~-----N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPD-----NNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccC-----CcCCCCCCC---CCCCcEEEecCCccCcccCc---cccccee
Confidence 345578999999999997665 4899999985 456677753 57899999999999999853 4689999
Q ss_pred EecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccccc
Q 038430 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIE 462 (677)
Q Consensus 383 ~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~ 462 (677)
++++|. +..+|... ++|+.|++++| .+..+|.. +.+|+.|++.++.....+ .+ ...|+.|.+.
T Consensus 268 ~Ls~N~-L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N~L~~Lp-------~l--p~~L~~L~Ls 330 (788)
T PRK15387 268 SIFSNP-LTHLPALP---SGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLASLP-------AL--PSELCKLWAY 330 (788)
T ss_pred eccCCc-hhhhhhch---hhcCEEECcCC-cccccccc---ccccceeECCCCccccCC-------CC--cccccccccc
Confidence 999998 78887633 57889999999 56777763 467999999887665321 11 1235555555
Q ss_pred CccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchh
Q 038430 463 GLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNE 542 (677)
Q Consensus 463 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (677)
++. +..++. + ..+|+.|++++|....
T Consensus 331 ~N~-L~~LP~-----l--p~~Lq~LdLS~N~Ls~---------------------------------------------- 356 (788)
T PRK15387 331 NNQ-LTSLPT-----L--PSGLQELSVSDNQLAS---------------------------------------------- 356 (788)
T ss_pred cCc-cccccc-----c--ccccceEecCCCccCC----------------------------------------------
Confidence 421 111111 1 2479999998871111
Q ss_pred hHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCccc
Q 038430 543 KDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFL 621 (677)
Q Consensus 543 ~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~~ 621 (677)
++ . .+++|+.|++++|.+..+|.. .++|+.|++++| .+..+|.. .+ |+.|++++ +.++.++
T Consensus 357 ----LP-~--lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~-N~LssIP---- 418 (788)
T PRK15387 357 ----LP-T--LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN-RLTSLPVL--PSELKELMVSG-NRLTSLP---- 418 (788)
T ss_pred ----CC-C--CCcccceehhhccccccCccc---ccccceEEecCC-cccCCCCc--ccCCCEEEccC-CcCCCCC----
Confidence 11 1 146889999999998888864 368999999998 66677753 35 99999998 4465553
Q ss_pred cCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 622 EIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
..+.+|+.|+++++.-..+|.. +..+++|+.|++
T Consensus 419 ------------------~l~~~L~~L~Ls~NqLt~LP~s----l~~L~~L~~LdL 452 (788)
T PRK15387 419 ------------------MLPSGLLSLSVYRNQLTRLPES----LIHLSSETTVNL 452 (788)
T ss_pred ------------------cchhhhhhhhhccCcccccChH----HhhccCCCeEEC
Confidence 2234688888887655545432 235777777764
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-13 Score=134.22 Aligned_cols=284 Identities=17% Similarity=0.165 Sum_probs=158.9
Q ss_pred cCCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecC-ccccccchh-hcc
Q 038430 300 AFGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSE-LHIERLPKT-LCE 375 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~-~~i~~lp~~-i~~ 375 (677)
..+.....+.+..|++..+| .+|+.+++||.|+|+. +.+..+ |+.|.+++.|-.|-+-+ |+|+.+|.. |++
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~-----N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSK-----NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccc-----cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence 44677778888888888777 6777888888888874 334333 56677777766665544 678877765 777
Q ss_pred CCCcCEEEecCCCCcccc-CcccccccccceeecCccCCCcccCC-cCCCCCCCCccCceeeCCCcCCCCcccccccccC
Q 038430 376 LYNLQKLDIRGCRNLREL-PTGIGKLKNMRSLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNF 453 (677)
Q Consensus 376 l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l 453 (677)
|..|+.|.+.-|+ +.-+ .+.+..|++|..|.+..| ....++. .+..+.+++++.+..+..-. .|.+..+...
T Consensus 139 L~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~ic----dCnL~wla~~ 212 (498)
T KOG4237|consen 139 LSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFIC----DCNLPWLADD 212 (498)
T ss_pred HHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcccc----ccccchhhhH
Confidence 8888888777776 4433 345777777777777777 4556665 46677777776655443111 2222222211
Q ss_pred CcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccch
Q 038430 454 QLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGE 533 (677)
Q Consensus 454 ~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (677)
........++ ........+......+ ++..-...+.+... +.
T Consensus 213 ~a~~~ietsg-----------------arc~~p~rl~~~Ri~q----------------~~a~kf~c~~esl~-----s~ 254 (498)
T KOG4237|consen 213 LAMNPIETSG-----------------ARCVSPYRLYYKRINQ----------------EDARKFLCSLESLP-----SR 254 (498)
T ss_pred Hhhchhhccc-----------------ceecchHHHHHHHhcc----------------cchhhhhhhHHhHH-----Hh
Confidence 1000011111 1111000000000000 00000000000000 00
Q ss_pred hhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCC-ChhHhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccc
Q 038430 534 YEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNIL-PKWLTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCH 609 (677)
Q Consensus 534 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~ 609 (677)
+. ...+-....-...+..+++|++|+|++|.+..+ +.|+..+..++.|.|..| +++.+.. +.++. |+.|+|.+
T Consensus 255 ~~--~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~ 331 (498)
T KOG4237|consen 255 LS--SEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD 331 (498)
T ss_pred hc--cccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC
Confidence 00 000000011122356678999999999988865 667888889999999888 6665554 67888 99999987
Q ss_pred cccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeecccc
Q 038430 610 LKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELE 654 (677)
Q Consensus 610 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 654 (677)
++|+.+...++ +...+|.+|.+-..|
T Consensus 332 -N~it~~~~~aF------------------~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 332 -NQITTVAPGAF------------------QTLFSLSTLNLLSNP 357 (498)
T ss_pred -CeeEEEecccc------------------cccceeeeeehccCc
Confidence 77887755443 445566666665444
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.6e-12 Score=143.34 Aligned_cols=158 Identities=25% Similarity=0.332 Sum_probs=116.1
Q ss_pred ceEEEEEEecC--CCccc-ccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcC
Q 038430 304 KVRHLGLKFKG--GASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQ 380 (677)
Q Consensus 304 ~l~~L~l~~~~--~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~ 380 (677)
+++.|-+..+. +..++ ..|..++.|++|++++ +....++|+.++.|.+||||+++++.+..+|.++++|..|.
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~----~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSG----NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCC----CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 68888888885 55555 3478899999999998 78889999999999999999999999999999999999999
Q ss_pred EEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcC--------------------
Q 038430 381 KLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVD-------------------- 440 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~-------------------- 440 (677)
+|++..+..+..+|.....|++|++|.+.... ...-...++.+.+|++|....+.....
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhh
Confidence 99999998777887777779999999987653 111112234444444444433322211
Q ss_pred ---CCCcccccccccCCcCCcccccCccC
Q 038430 441 ---GGSTCRLECLKNFQLIRKCGIEGLSN 466 (677)
Q Consensus 441 ---~~~~~~~~~L~~l~~L~~L~i~~~~~ 466 (677)
.........+..+.+|+.|.|..+..
T Consensus 701 ~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 701 IEGCSKRTLISSLGSLGNLEELSILDCGI 729 (889)
T ss_pred hcccccceeecccccccCcceEEEEcCCC
Confidence 00122344556677777777777644
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-12 Score=134.76 Aligned_cols=42 Identities=24% Similarity=0.056 Sum_probs=21.1
Q ss_pred HhhhcCCCCCCcEEEEecCCCCCC-ChhHh-h----ccCCCeEEEeCC
Q 038430 547 LLEALQPPLNVEKLWILFNGGNIL-PKWLT-S----LTNLSDLKLVFC 588 (677)
Q Consensus 547 ~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~-~----l~~L~~L~l~~c 588 (677)
+...+..+++|+.|++++|.+... +..+. . .+.|++|++++|
T Consensus 213 l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 213 LAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 334444556666666666654421 11111 1 256666666666
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-11 Score=128.18 Aligned_cols=240 Identities=18% Similarity=0.118 Sum_probs=156.0
Q ss_pred ceEEEEEEecCC-----CcccccccCCCcccEEEeCCCCCC--CCCCccCCcccCCCCCcCEEEecCcccc-ccchhhcc
Q 038430 304 KVRHLGLKFKGG-----ASFPMSIHGLNRLRTLLIDDESPP--NSSLDKIPENVGKLMHLKYLNLSELHIE-RLPKTLCE 375 (677)
Q Consensus 304 ~l~~L~l~~~~~-----~~~p~~~~~l~~L~~L~l~~~~l~--~~~~~~lp~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~ 375 (677)
.++.+.+.++.+ ..++..+...+.++.|+++++.+. ......++..+..+++|++|++++|.+. ..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 477888888776 235556777788999999875433 1222334556777889999999999876 45555655
Q ss_pred CCC---cCEEEecCCCCcc----ccCcccccc-cccceeecCccCCCc----ccCCcCCCCCCCCccCceeeCCCcCCCC
Q 038430 376 LYN---LQKLDIRGCRNLR----ELPTGIGKL-KNMRSLLNGLTCSLK----YMPIGISKLTSLRTLDKFAVGGGVDGGS 443 (677)
Q Consensus 376 l~~---L~~L~L~~~~~l~----~lp~~i~~l-~~L~~L~l~~~~~~~----~~p~~i~~l~~L~~L~l~~~~~~~~~~~ 443 (677)
+.+ |++|++++|+... .+...+..+ ++|+.|++++|.... .++..+..+.+|++|++..+..... ..
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~ 182 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA-GI 182 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH-HH
Confidence 555 9999999987321 233456666 889999999995432 2334466777899998887765420 00
Q ss_pred cccccccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCccc
Q 038430 444 TCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKE 523 (677)
Q Consensus 444 ~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (677)
......+..+++|+.|+++++.-...........+..+++|+.|++++|...
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~---------------------------- 234 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT---------------------------- 234 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc----------------------------
Confidence 1122345566789999988764322222334556777899999999987111
Q ss_pred ccCCccccchhhhhhcchhhHHHHhhhc-CCCCCCcEEEEecCCCC-----CCChhHhhccCCCeEEEeCCC
Q 038430 524 EKGGKVVDGEYEERRRKNEKDEQLLEAL-QPPLNVEKLWILFNGGN-----ILPKWLTSLTNLSDLKLVFCE 589 (677)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~c~ 589 (677)
......+...+ ...+.|++|++.+|.+. .++..+..+++|++|++++|.
T Consensus 235 -----------------~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 235 -----------------DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred -----------------hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 01112222222 13578999999999875 233444567899999999983
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.5e-12 Score=122.92 Aligned_cols=275 Identities=19% Similarity=0.220 Sum_probs=165.9
Q ss_pred EEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcc-cCCCCCcCEEEecCcccccc-chhhccCCCcCEEEec
Q 038430 308 LGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPEN-VGKLMHLKYLNLSELHIERL-PKTLCELYNLQKLDIR 385 (677)
Q Consensus 308 L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~L~ 385 (677)
++-++.+..++|..+. +.-..++|. .+.+..+|+. |+.+++||.||||+|.|+.+ |..|.++.+|..|-+.
T Consensus 51 VdCr~~GL~eVP~~LP--~~tveirLd-----qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvly 123 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP--PETVEIRLD-----QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLY 123 (498)
T ss_pred EEccCCCcccCcccCC--CcceEEEec-----cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhh
Confidence 3444556667775543 345567776 4677888755 79999999999999999976 6679999999988888
Q ss_pred CCCCccccCc-ccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 386 GCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 386 ~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
++..++.+|. .|++|..|+.|.+.-|. +..++ ..+..|.+|..|.++++..... .-..+..+..++.+.+..
T Consensus 124 g~NkI~~l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i-----~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 124 GNNKITDLPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSI-----CKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred cCCchhhhhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhh-----ccccccchhccchHhhhc
Confidence 8555999997 48889999999888773 44444 4578888888888887765531 112344455555544433
Q ss_pred ccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccch-hhhhhcchh
Q 038430 464 LSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGE-YEERRRKNE 542 (677)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 542 (677)
... ....+++.+..-.-... .+-+|+- +++.. .-..+....
T Consensus 198 np~---------icdCnL~wla~~~a~~~-----------------------ietsgar------c~~p~rl~~~Ri~q~ 239 (498)
T KOG4237|consen 198 NPF---------ICDCNLPWLADDLAMNP-----------------------IETSGAR------CVSPYRLYYKRINQE 239 (498)
T ss_pred Ccc---------ccccccchhhhHHhhch-----------------------hhcccce------ecchHHHHHHHhccc
Confidence 110 11112222211000000 0000000 00000 001111122
Q ss_pred hHHHHhhhcCCCCCCcEEEEecCCCCCCCh-hHhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccccccceEeCC
Q 038430 543 KDEQLLEALQPPLNVEKLWILFNGGNILPK-WLTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHLKSVKRVGN 618 (677)
Q Consensus 543 ~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~~~l~~i~~ 618 (677)
....+...+... ...+....+.....|. .+..|++|++|++++| .++.+.. +.++. ++.|.|.. ++|+.+..
T Consensus 240 ~a~kf~c~~esl--~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~ 315 (498)
T KOG4237|consen 240 DARKFLCSLESL--PSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTR-NKLEFVSS 315 (498)
T ss_pred chhhhhhhHHhH--HHhhccccCcCCcChHHHHhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCc-chHHHHHH
Confidence 222222222111 1123333444455553 3669999999999998 6655553 88889 99999987 77888865
Q ss_pred ccccCCCCCCCCCCCCCCCcccCCCccceeeeccccc
Q 038430 619 EFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
..+ ..+..|+.|++.+...
T Consensus 316 ~~f------------------~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 316 GMF------------------QGLSGLKTLSLYDNQI 334 (498)
T ss_pred Hhh------------------hccccceeeeecCCee
Confidence 544 6788999999998765
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.7e-12 Score=129.90 Aligned_cols=189 Identities=25% Similarity=0.317 Sum_probs=125.1
Q ss_pred eEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEe
Q 038430 305 VRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDI 384 (677)
Q Consensus 305 l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L 384 (677)
...++++.|....+|..+..+..|..+.+. .+.+..+|..++++..|.||+|+.|++..+|..++.|+ |+.|-+
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy-----~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILY-----HNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHH-----hccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 345566666666677666666666666666 35566667777777777777777777777777776665 677777
Q ss_pred cCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCc
Q 038430 385 RGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGL 464 (677)
Q Consensus 385 ~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~ 464 (677)
++|+ ++.+|..++.+..|.+|+.+.| .+..+|..++.+.+|+.|.+..+...
T Consensus 151 sNNk-l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~-------------------------- 202 (722)
T KOG0532|consen 151 SNNK-LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLE-------------------------- 202 (722)
T ss_pred ecCc-cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhh--------------------------
Confidence 7666 7777777776677777777766 35556666666655555543322211
Q ss_pred cCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhH
Q 038430 465 SNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKD 544 (677)
Q Consensus 465 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (677)
T Consensus 203 -------------------------------------------------------------------------------- 202 (722)
T KOG0532|consen 203 -------------------------------------------------------------------------------- 202 (722)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCC----CCCcc-cceeecccc
Q 038430 545 EQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPP----LGKLP-LEKLELCHL 610 (677)
Q Consensus 545 ~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~----l~~l~-L~~L~l~~~ 610 (677)
.++..+. .-.|.+||+++|++..+|..+..|+.|++|.|.+| -+++.|. -|..- .|+|++..|
T Consensus 203 -~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenN-PLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 203 -DLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENN-PLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -hCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccC-CCCCChHHHHhccceeeeeeecchhc
Confidence 0111111 12467888888888889988889999999999877 5556553 45566 888888877
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-08 Score=109.17 Aligned_cols=122 Identities=32% Similarity=0.401 Sum_probs=89.9
Q ss_pred EEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCC-CcCEEEecCccccccchhhccCCCcCEEEecC
Q 038430 308 LGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLM-HLKYLNLSELHIERLPKTLCELYNLQKLDIRG 386 (677)
Q Consensus 308 L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~-~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~ 386 (677)
+....+.+..-...+...+.+..|.+. ++.+..+|...+.+. +|+.|++++|.+..+|..+..+++|+.|++++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~-----~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLD-----NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeccccccccCchhhhcccceeEEecC-----CcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC
Confidence 444444442223344555678888877 566777777667674 88888888888888877788888888888888
Q ss_pred CCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeC
Q 038430 387 CRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVG 436 (677)
Q Consensus 387 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 436 (677)
|. +..+|...+.+++|+.|++++| .+..+|..++.+..|++|.+.++.
T Consensus 173 N~-l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 173 ND-LSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred ch-hhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc
Confidence 88 8888886668888888888888 577788766667778888776653
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.8e-08 Score=92.58 Aligned_cols=128 Identities=26% Similarity=0.278 Sum_probs=50.6
Q ss_pred CCceEEEEEEecCCCccccccc-CCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhh-ccCCCc
Q 038430 302 GGKVRHLGLKFKGGASFPMSIH-GLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTL-CELYNL 379 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~-~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i-~~l~~L 379 (677)
+.+++.|+++++.+..+. .+. .+.+|+.|++++ +.+..++ .+..+++|+.|++++|.|+.+++.+ ..+++|
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~-----N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSN-----NQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -------------------S--TT-TT--EEE-TT-----S--S--T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCC-----CCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 446788999999887765 444 578899999984 5566663 5778899999999999999886655 468999
Q ss_pred CEEEecCCCCccccCc--ccccccccceeecCccCCCcccCC----cCCCCCCCCccCceeeCCC
Q 038430 380 QKLDIRGCRNLRELPT--GIGKLKNMRSLLNGLTCSLKYMPI----GISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 380 ~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~l~~~~~~ 438 (677)
++|++++|+ +..+.. .+..+++|+.|++.+|... ..+. -+..+++|+.||...+...
T Consensus 91 ~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V~~~ 153 (175)
T PF14580_consen 91 QELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDVTEE 153 (175)
T ss_dssp -EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEETTS-
T ss_pred CEEECcCCc-CCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEccHH
Confidence 999999887 655443 4677889999999988533 3232 1556778888887665443
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.4e-09 Score=99.02 Aligned_cols=87 Identities=22% Similarity=0.221 Sum_probs=70.5
Q ss_pred hcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCccccCCCCCC
Q 038430 550 ALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFLEIEESED 628 (677)
Q Consensus 550 ~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~ 628 (677)
.+..+++|..|+|++|.+.++..|-..+.|.++|.|++| .++++..+++|- |.+|++++ ++++.++.-
T Consensus 324 nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~-N~Ie~ldeV--------- 392 (490)
T KOG1259|consen 324 NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSS-NQIEELDEV--------- 392 (490)
T ss_pred hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhhhhhHhhhhheeccccc-cchhhHHHh---------
Confidence 456678899999999998888888889999999999988 888888888888 99999987 556655321
Q ss_pred CCCCCCCCCcccCCCccceeeeccccc
Q 038430 629 DPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 629 ~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
.+.+.+|+|+.+.+.++|-
T Consensus 393 --------~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 393 --------NHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred --------cccccccHHHHHhhcCCCc
Confidence 1247899999999998886
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.5e-09 Score=103.80 Aligned_cols=60 Identities=17% Similarity=0.091 Sum_probs=27.8
Q ss_pred CCCCcCEEEecCccccccch--hhccCCCcCEEEecCCCCc--cccCcccccccccceeecCcc
Q 038430 352 KLMHLKYLNLSELHIERLPK--TLCELYNLQKLDIRGCRNL--RELPTGIGKLKNMRSLLNGLT 411 (677)
Q Consensus 352 ~l~~L~~L~Ls~~~i~~lp~--~i~~l~~L~~L~L~~~~~l--~~lp~~i~~l~~L~~L~l~~~ 411 (677)
++++|+...|.++.+...+. -...|++++.|||++|-.. ..+-.....|++|+.|+++.|
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N 182 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN 182 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc
Confidence 44555555555555544432 3445555555555554311 111122334555555555554
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.4e-09 Score=94.50 Aligned_cols=115 Identities=25% Similarity=0.318 Sum_probs=33.2
Q ss_pred ecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccC-CCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCc
Q 038430 312 FKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVG-KLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNL 390 (677)
Q Consensus 312 ~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~-~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l 390 (677)
.+.+...+ .+.+..+++.|++.+ +.+..+ +.++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|+ +
T Consensus 6 ~~~i~~~~-~~~n~~~~~~L~L~~-----n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I 76 (175)
T PF14580_consen 6 ANMIEQIA-QYNNPVKLRELNLRG-----NQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-I 76 (175)
T ss_dssp -------------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---
T ss_pred cccccccc-ccccccccccccccc-----cccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-C
Confidence 33444444 344455778888884 445554 3454 5778888888888888774 57778888888888888 7
Q ss_pred cccCccc-ccccccceeecCccCCCcccC--CcCCCCCCCCccCceeeC
Q 038430 391 RELPTGI-GKLKNMRSLLNGLTCSLKYMP--IGISKLTSLRTLDKFAVG 436 (677)
Q Consensus 391 ~~lp~~i-~~l~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~l~~~~ 436 (677)
..++..+ ..+++|++|++++|. +..+. ..+..+++|+.|++.++.
T Consensus 77 ~~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 77 SSISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred CccccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCc
Confidence 7776555 357888888888883 33322 123344555555554443
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.2e-09 Score=101.50 Aligned_cols=187 Identities=17% Similarity=0.134 Sum_probs=108.0
Q ss_pred CcCEEEecCCCCcc--ccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCc
Q 038430 378 NLQKLDIRGCRNLR--ELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQL 455 (677)
Q Consensus 378 ~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~ 455 (677)
.||+|||+... ++ .+..-+..+.+|+.|.+.++..-..+...|.+-.+
T Consensus 186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~----------------------------- 235 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSN----------------------------- 235 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccc-----------------------------
Confidence 47777777654 32 23333555666666666666433333333444444
Q ss_pred CCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhh
Q 038430 456 IRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYE 535 (677)
Q Consensus 456 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (677)
|+.++++.+..+... ....-+.+|+.|..|+|+||+..+
T Consensus 236 L~~lnlsm~sG~t~n--~~~ll~~scs~L~~LNlsWc~l~~--------------------------------------- 274 (419)
T KOG2120|consen 236 LVRLNLSMCSGFTEN--ALQLLLSSCSRLDELNLSWCFLFT--------------------------------------- 274 (419)
T ss_pred ceeeccccccccchh--HHHHHHHhhhhHhhcCchHhhccc---------------------------------------
Confidence 455555554443332 223346678888899999883222
Q ss_pred hhhcchhhHHHHhhhcCCCCCCcEEEEecCCCC----CCChhHhhccCCCeEEEeCCCCCCc--CCCCCCcc-cceeecc
Q 038430 536 ERRRKNEKDEQLLEALQPPLNVEKLWILFNGGN----ILPKWLTSLTNLSDLKLVFCENCEQ--LPPLGKLP-LEKLELC 608 (677)
Q Consensus 536 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----~lp~~~~~l~~L~~L~l~~c~~~~~--l~~l~~l~-L~~L~l~ 608 (677)
.........+ -++|++|+|+|+.-. .+..-...+++|..|+|++|..++. +..+-+++ |++|.++
T Consensus 275 ------~~Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 275 ------EKVTVAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred ------hhhhHHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 0111112222 257888888887421 1222223788999999998876653 33366888 9999999
Q ss_pred ccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeeccccc-Cccccc
Q 038430 609 HLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE-GNYRIT 661 (677)
Q Consensus 609 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~ 661 (677)
.|..| ++..+.. ....|+|..|++.+|-. ..+...
T Consensus 347 RCY~i--~p~~~~~----------------l~s~psl~yLdv~g~vsdt~mel~ 382 (419)
T KOG2120|consen 347 RCYDI--IPETLLE----------------LNSKPSLVYLDVFGCVSDTTMELL 382 (419)
T ss_pred hhcCC--ChHHeee----------------eccCcceEEEEeccccCchHHHHH
Confidence 88755 2222221 25678899999988877 555433
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.2e-08 Score=98.24 Aligned_cols=257 Identities=19% Similarity=0.128 Sum_probs=137.8
Q ss_pred cccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcc---c-cccchh-------hccCCCcCEEEecCCCC
Q 038430 321 SIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELH---I-ERLPKT-------LCELYNLQKLDIRGCRN 389 (677)
Q Consensus 321 ~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~---i-~~lp~~-------i~~l~~L~~L~L~~~~~ 389 (677)
....+..+..+++++|.+...-...+-+.+.+.++|+.-+++.-- . ..+|+. +-..++|++||||+|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 444566677777776432222222233445555677777666532 1 134432 23456777777777653
Q ss_pred ccccCc----ccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCc
Q 038430 390 LRELPT----GIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGL 464 (677)
Q Consensus 390 l~~lp~----~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~ 464 (677)
-..-++ -+..+..|++|.+.+|. ++..- ..++. .|..|. .....++-.+||.+.....
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~--al~~l~--------------~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR--ALFELA--------------VNKKAASKPKLRVFICGRN 167 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH--HHHHHH--------------HHhccCCCcceEEEEeecc
Confidence 333222 24456667777777663 22111 00110 111111 1111223334666555543
Q ss_pred cCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhH
Q 038430 465 SNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKD 544 (677)
Q Consensus 465 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (677)
.--+.........+...+.|+.+.+..|+... ...
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~---------------------------------------------eG~ 202 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRP---------------------------------------------EGV 202 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccC---------------------------------------------chh
Confidence 32233334455566777888888888773222 122
Q ss_pred HHHhhhcCCCCCCcEEEEecCCCCC-----CChhHhhccCCCeEEEeCCCCCCcCCC-------CCCcc-cceeeccccc
Q 038430 545 EQLLEALQPPLNVEKLWILFNGGNI-----LPKWLTSLTNLSDLKLVFCENCEQLPP-------LGKLP-LEKLELCHLK 611 (677)
Q Consensus 545 ~~~~~~l~~~~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~c~~~~~l~~-------l~~l~-L~~L~l~~~~ 611 (677)
.....++..+++|+.|+|..|.+.. +..-+..+++|+.|++++| .++.=-. -...| |++|.+.++.
T Consensus 203 ~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 203 TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcch
Confidence 4567778888999999999988753 2223346788999999999 3332111 23467 8888888743
Q ss_pred cceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeeccccc
Q 038430 612 SVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 612 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
++.=....... ....-|.|.+|.|++|.-
T Consensus 282 -It~da~~~la~--------------~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 282 -ITRDAALALAA--------------CMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred -hHHHHHHHHHH--------------HHhcchhhHHhcCCcccc
Confidence 32211111111 024478888998888764
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4e-08 Score=94.12 Aligned_cols=79 Identities=20% Similarity=0.151 Sum_probs=47.8
Q ss_pred CCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCc
Q 038430 353 LMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDK 432 (677)
Q Consensus 353 l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l 432 (677)
.+.|..+|||+|.|+.+-.++.-++.++.|++++|. +..+.. +..|++|++||+++|. +.++...-.++.++++|.+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeeh
Confidence 345667777777777666666667777777777776 555544 6667777777777762 3333222233444555554
Q ss_pred ee
Q 038430 433 FA 434 (677)
Q Consensus 433 ~~ 434 (677)
..
T Consensus 360 a~ 361 (490)
T KOG1259|consen 360 AQ 361 (490)
T ss_pred hh
Confidence 43
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.6e-09 Score=106.89 Aligned_cols=131 Identities=25% Similarity=0.376 Sum_probs=112.0
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
...+..++++.|++..+|..++.++ |+.|.++ ++.+..+|+.++.+.+|..||.+.|.+..+|+.++++..|+.
T Consensus 120 L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~s-----NNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVS-----NNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRD 193 (722)
T ss_pred hhHHHHhhhccchhhcCChhhhcCc-ceeEEEe-----cCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHH
Confidence 4456778888888888887777776 8899888 677888999999889999999999999999999999999999
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCC
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDG 441 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~ 441 (677)
|+++.|. +..+|..+..| .|..||++.| .+..+|-.|.+|+.|++|.+-++...+.+
T Consensus 194 l~vrRn~-l~~lp~El~~L-pLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 194 LNVRRNH-LEDLPEELCSL-PLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred HHHhhhh-hhhCCHHHhCC-ceeeeecccC-ceeecchhhhhhhhheeeeeccCCCCCCh
Confidence 9999988 88889888855 4888999977 68889999999999999999888776544
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.4e-07 Score=100.92 Aligned_cols=171 Identities=23% Similarity=0.288 Sum_probs=136.3
Q ss_pred CceEEEEEEecCCCcccccccCCC-cccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 303 GKVRHLGLKFKGGASFPMSIHGLN-RLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 303 ~~l~~L~l~~~~~~~~p~~~~~l~-~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+..+.+..+.+..++....... +|+.|+++ .+.+..+|..++.+++|+.|++++|.+..+|...+.+++|+.
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~-----~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLS-----DNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred cceeEEecCCcccccCccccccchhhccccccc-----ccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 468899999999999987777774 99999998 566778877789999999999999999999988878999999
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++++|. +..+|..++.+..|+.|.+++|. ....+..+.++.++..|.+.++.... ....+..+..++.|.+
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~------~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLED------LPESIGNLSNLETLDL 262 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeee------ccchhccccccceecc
Confidence 9999998 99999977788889999999984 45566778888888888755554331 2566777777888888
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
++.. +..... +....+|+.|+++.+
T Consensus 263 s~n~----i~~i~~--~~~~~~l~~L~~s~n 287 (394)
T COG4886 263 SNNQ----ISSISS--LGSLTNLRELDLSGN 287 (394)
T ss_pred cccc----cccccc--ccccCccCEEeccCc
Confidence 7632 222212 677789999999876
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.2e-08 Score=98.89 Aligned_cols=156 Identities=14% Similarity=0.036 Sum_probs=92.2
Q ss_pred CCceEEEEEEecCCCccc--ccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchh--hccCC
Q 038430 302 GGKVRHLGLKFKGGASFP--MSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKT--LCELY 377 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p--~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~--i~~l~ 377 (677)
..+++.+++.++.+...+ .-...|++++.|+++.|-+.+ ...+-.-...+++|+.|+|+.|++...-.+ -..+.
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh--HHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456777777777766555 356678888888888532111 111223346778888888888876532221 23567
Q ss_pred CcCEEEecCCCCc-cccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcC
Q 038430 378 NLQKLDIRGCRNL-RELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLI 456 (677)
Q Consensus 378 ~L~~L~L~~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L 456 (677)
+|+.|.|+.|... ..+-......++|..|++..|..+.........++.|++|++.++.... .........++.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~----~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID----FDQGYKVGTLPGL 273 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc----cccccccccccch
Confidence 7888888888732 1222334556778888888875433333334456677778777766543 2233444555555
Q ss_pred CcccccC
Q 038430 457 RKCGIEG 463 (677)
Q Consensus 457 ~~L~i~~ 463 (677)
+.|+++.
T Consensus 274 ~~Lnls~ 280 (505)
T KOG3207|consen 274 NQLNLSS 280 (505)
T ss_pred hhhhccc
Confidence 5555443
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.4e-07 Score=100.70 Aligned_cols=103 Identities=22% Similarity=0.293 Sum_probs=75.0
Q ss_pred cccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccc-ccchhhccCCCcCEEEecCCCCccccCcccccccccce
Q 038430 327 RLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE-RLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRS 405 (677)
Q Consensus 327 ~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 405 (677)
.++.|+|++ +.....+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.....+|..+++|++|++
T Consensus 419 ~v~~L~L~~----n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDN----QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCC----CCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 366777776 3334567777888888888888888876 77777888888888888888755678888888888888
Q ss_pred eecCccCCCcccCCcCCCC-CCCCccCce
Q 038430 406 LLNGLTCSLKYMPIGISKL-TSLRTLDKF 433 (677)
Q Consensus 406 L~l~~~~~~~~~p~~i~~l-~~L~~L~l~ 433 (677)
|++++|...+.+|..++.+ .++..+++.
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEec
Confidence 8888887777777776543 234444443
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-06 Score=98.52 Aligned_cols=110 Identities=25% Similarity=0.340 Sum_probs=93.5
Q ss_pred ceEEEEEEecCCC-cccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccc-ccchhhccCCCcCE
Q 038430 304 KVRHLGLKFKGGA-SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE-RLPKTLCELYNLQK 381 (677)
Q Consensus 304 ~l~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~l~~L~~ 381 (677)
.++.|++.++.+. .+|..+..+++|+.|++++ +.....+|..++.+++|+.|+|++|.+. .+|..++++++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~----N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSG----NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCC----CcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 4788999998884 6788899999999999997 4444678988999999999999999998 78999999999999
Q ss_pred EEecCCCCccccCcccccc-cccceeecCccCCCccc
Q 038430 382 LDIRGCRNLRELPTGIGKL-KNMRSLLNGLTCSLKYM 417 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l-~~L~~L~l~~~~~~~~~ 417 (677)
|+|++|.....+|..++.+ .++..+++.+|..+...
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCccccCC
Confidence 9999999778999988764 46778888888544333
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.2e-07 Score=93.05 Aligned_cols=187 Identities=17% Similarity=0.124 Sum_probs=108.7
Q ss_pred CCceEEEEEEecCCCc-----ccccccCCCcccEEEeCCCCCCCCCCccCCc-------ccCCCCCcCEEEecCcccc-c
Q 038430 302 GGKVRHLGLKFKGGAS-----FPMSIHGLNRLRTLLIDDESPPNSSLDKIPE-------NVGKLMHLKYLNLSELHIE-R 368 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-------~~~~l~~L~~L~Ls~~~i~-~ 368 (677)
...+..+.+++|.+.. +-..+.+.+.|+..++++.. .+-....+|+ .+..+++|++||||.|-+. .
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 5678899999998742 33456677789998887532 1222233443 3445679999999999876 2
Q ss_pred cch----hhccCCCcCEEEecCCCCccccC--------------cccccccccceeecCccCCCcccCC-----cCCCCC
Q 038430 369 LPK----TLCELYNLQKLDIRGCRNLRELP--------------TGIGKLKNMRSLLNGLTCSLKYMPI-----GISKLT 425 (677)
Q Consensus 369 lp~----~i~~l~~L~~L~L~~~~~l~~lp--------------~~i~~l~~L~~L~l~~~~~~~~~p~-----~i~~l~ 425 (677)
-++ -++++..|++|.|.+|. ++..- .-++.-++|+++...+| ++...+. .+....
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHP 185 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhcc
Confidence 222 36788999999999997 44321 12344567888888777 4444432 244445
Q ss_pred CCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 426 SLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 426 ~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
.|+.+.+..+++..... ......+.++++|+.|++.+..-...........++.+++|+.|+++.|
T Consensus 186 ~leevr~~qN~I~~eG~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccceEEEecccccCchh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 66666666665543110 1223445555555555555422211222233334455555555555555
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.7e-08 Score=98.76 Aligned_cols=297 Identities=15% Similarity=0.056 Sum_probs=171.5
Q ss_pred CceEEEEEEecCCC---cccccccCCCcccEEEeCCCCCCCCCCcc--CCcccCCCCCcCEEEecCcc-ccc--cchhhc
Q 038430 303 GKVRHLGLKFKGGA---SFPMSIHGLNRLRTLLIDDESPPNSSLDK--IPENVGKLMHLKYLNLSELH-IER--LPKTLC 374 (677)
Q Consensus 303 ~~l~~L~l~~~~~~---~~p~~~~~l~~L~~L~l~~~~l~~~~~~~--lp~~~~~l~~L~~L~Ls~~~-i~~--lp~~i~ 374 (677)
..++.|++.++.-. .+-..-..++++..|.+.+ +..++. +-+--..+++|++|++..|. ++. +-.-..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~g----c~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYG----CKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhc----ceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 45667777776432 2223345577777777776 333322 11112567888899888865 552 222345
Q ss_pred cCCCcCEEEecCCCCccc--cCcccccccccceeecCccCCCcc--cCCcCCCCCCCCccCceeeCCCcCCCCccccccc
Q 038430 375 ELYNLQKLDIRGCRNLRE--LPTGIGKLKNMRSLLNGLTCSLKY--MPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECL 450 (677)
Q Consensus 375 ~l~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~--~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L 450 (677)
.+++|++|++++|..+.. +-....+++.|+.+.+.+|...+. +-..-+.+..+..+++..+...++ ......-
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD---~~~~~i~ 290 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD---EDLWLIA 290 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccc---hHHHHHh
Confidence 688899999998875543 222344566677777777732211 000012222333444333322220 1111222
Q ss_pred ccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccc
Q 038430 451 KNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVV 530 (677)
Q Consensus 451 ~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (677)
.....|+.|+.+++..+.+. ....--.++++|+.|.+..|..
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~--~l~aLg~~~~~L~~l~l~~c~~------------------------------------ 332 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDE--VLWALGQHCHNLQVLELSGCQQ------------------------------------ 332 (483)
T ss_pred hhhhHhhhhcccCCCCCchH--HHHHHhcCCCceEEEeccccch------------------------------------
Confidence 23556777777776554332 2233345678999999987711
Q ss_pred cchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChh--H-hhccCCCeEEEeCCCCCCcC--CC----CCCcc
Q 038430 531 DGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKW--L-TSLTNLSDLKLVFCENCEQL--PP----LGKLP 601 (677)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~--~-~~l~~L~~L~l~~c~~~~~l--~~----l~~l~ 601 (677)
..+..+-.--...+.|+.|++.++....--.. + .+++.|+.|.+++|..+++- .. -..+.
T Consensus 333 -----------fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 333 -----------FSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred -----------hhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 11111111123457899999988864322111 1 27899999999999776544 21 23466
Q ss_pred -cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeeccccc-CccccccCCccccCCCcccc
Q 038430 602 -LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE-GNYRITRKENISIIPRLSSL 675 (677)
Q Consensus 602 -L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~p~L~~L 675 (677)
|+.|.+++|+.+..-..++. ..+++|+.+++.+|.. ..=++. ....++|+++..
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l------------------~~c~~Leri~l~~~q~vtk~~i~--~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHL------------------SICRNLERIELIDCQDVTKEAIS--RFATHLPNIKVH 457 (483)
T ss_pred ccceeeecCCCCchHHHHHHH------------------hhCcccceeeeechhhhhhhhhH--HHHhhCccceeh
Confidence 99999999998877655553 6788999999999988 444444 223378877654
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.8e-08 Score=91.84 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=31.2
Q ss_pred CCCCCcCEEEecCcccc-ccchhhccCCCcCEEEecCCCCccccCc--ccccccccceeecCcc
Q 038430 351 GKLMHLKYLNLSELHIE-RLPKTLCELYNLQKLDIRGCRNLRELPT--GIGKLKNMRSLLNGLT 411 (677)
Q Consensus 351 ~~l~~L~~L~Ls~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~ 411 (677)
..+.+|+.|.+.++.+. .+-..+.+-.+|+.|+|+.|..+.+... -+.+++.|..|++++|
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc 270 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWC 270 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHh
Confidence 44555555555555554 3334455555555555555554443322 2344555555555555
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.6e-06 Score=65.25 Aligned_cols=56 Identities=29% Similarity=0.468 Sum_probs=35.9
Q ss_pred CcCEEEecCccccccch-hhccCCCcCEEEecCCCCccccCc-ccccccccceeecCcc
Q 038430 355 HLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLT 411 (677)
Q Consensus 355 ~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~ 411 (677)
+|++|++++|.++.+|+ .+.++++|++|++++|. +..+|+ .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 56666666666666654 45666677777776666 555543 4566667777776666
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.6e-06 Score=86.93 Aligned_cols=65 Identities=23% Similarity=0.314 Sum_probs=46.6
Q ss_pred CCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCc
Q 038430 351 GKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIG 420 (677)
Q Consensus 351 ~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~ 420 (677)
..+.+++.|++++|.++.+|. -..+|+.|.+++|..+..+|..+. ++|++|++++|..+..+|.+
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc
Confidence 345778888888888877772 224688888888887777776542 57888888888666666654
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-07 Score=100.23 Aligned_cols=123 Identities=24% Similarity=0.274 Sum_probs=77.7
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecC
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRG 386 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~ 386 (677)
.+.+..+.+..+-..+..+.+|..|++. .+.+..+...+..+.+|++|++++|.|+.+ ..+..++.|+.|++.+
T Consensus 76 ~l~l~~n~i~~~~~~l~~~~~l~~l~l~-----~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 76 ELNLRQNLIAKILNHLSKLKSLEALDLY-----DNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG 149 (414)
T ss_pred hhccchhhhhhhhcccccccceeeeecc-----ccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc
Confidence 3334445544433345666777777777 345555544367778888888888887776 3466677788888888
Q ss_pred CCCccccCcccccccccceeecCccCCCcccCCc-CCCCCCCCccCceeeCCC
Q 038430 387 CRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 387 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~ 438 (677)
|. +..++. +..+++|+.+++++|. +..++.. ...+.+++.+.+..+.+.
T Consensus 150 N~-i~~~~~-~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 150 NL-ISDISG-LESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred Cc-chhccC-CccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchh
Confidence 77 666655 5557778888888773 4344332 355666666666655443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00012 Score=87.44 Aligned_cols=246 Identities=15% Similarity=0.227 Sum_probs=144.4
Q ss_pred CeEEec-CCCCHHHHHHHHHHHhcCCCCC-------------CchHHHHHHHHHHHcC--CccEEEEEECCcCCCccchh
Q 038430 1 MWVCVS-DTFEEISVANAIIEGLGESTSS-------------LSEFQSLMSHIHRSIE--GKKNFLILNDVWDGDYNKWA 64 (677)
Q Consensus 1 ~WV~vs-~~~~~~~i~~~i~~~l~~~~~~-------------~~~~~~~~~~i~~~L~--~kr~LlVlDdvw~~~~~~~~ 64 (677)
+|+++. .+-+...++..++..+...... ..+.......+...+. +.+++|||||+...+.....
T Consensus 60 ~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~ 139 (903)
T PRK04841 60 GWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIH 139 (903)
T ss_pred EEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHH
Confidence 599996 4557777888888777532211 0122233333333443 67899999999766434433
Q ss_pred -hhhhhhcCCCCCcEEEEEcCchH---HHHhcCCCCeEecC----CCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHH
Q 038430 65 -PFFLCLNHGLHGSKILVTTRNEL---VARMMGSTNIIFIE----QLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIA 136 (677)
Q Consensus 65 -~l~~~~~~~~~gS~IiiTTR~~~---v~~~~~~~~~~~v~----~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~ 136 (677)
.+...++....+-++|||||... ...........++. +|+.+|+.++|....-. +--.+...++.
T Consensus 140 ~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-------~~~~~~~~~l~ 212 (903)
T PRK04841 140 EAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-------PIEAAESSRLC 212 (903)
T ss_pred HHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-------CCCHHHHHHHH
Confidence 34444444455678989999842 11111123355666 89999999999764311 11223467899
Q ss_pred HHhcCCchHHHHHHHHhccCCC-HHHHHHHHhhhhhhhhh-cCCCccceee-cccccCCCchhhhHHHhhhccCCCCcee
Q 038430 137 RKCKGLPIAAKVIGNLLRSKST-IKDWQRILDSEMWKAEE-IGKGLLTPLL-LSYNDLSSNSMVKRFFSYCAVFPKDYNM 213 (677)
Q Consensus 137 ~~c~GlPLal~~ig~~L~~~~~-~~~w~~~l~~~~~~~~~-~~~~i~~~l~-~Sy~~L~~~~~~k~~fl~~a~fp~~~~i 213 (677)
+.|+|.|+++..++..+..... .... .. .... ....+...+. --++.|++ ..+..+...|+++. +
T Consensus 213 ~~t~Gwp~~l~l~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~l~~~v~~~l~~--~~~~~l~~~a~~~~---~ 280 (903)
T PRK04841 213 DDVEGWATALQLIALSARQNNSSLHDS---AR----RLAGINASHLSDYLVEEVLDNVDL--ETRHFLLRCSVLRS---M 280 (903)
T ss_pred HHhCChHHHHHHHHHHHhhCCCchhhh---hH----hhcCCCchhHHHHHHHHHHhcCCH--HHHHHHHHhccccc---C
Confidence 9999999999998877754421 1110 00 0000 0112333222 23678888 89999999999863 2
Q ss_pred cHHHHHHHHHHcCCcCcchhhhHHHhHHHHHHHHHHccCccccccCCCCCeeeEEeChhHHHHHHHHh
Q 038430 214 YKEELISLWMAQGYLNAEEYEEKEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVS 281 (677)
Q Consensus 214 ~~~~li~~wi~~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mhdli~d~~~~~~ 281 (677)
+. .+...-. | ...+...+..|.+.+++....... + ..|..|++++++.....
T Consensus 281 ~~-~l~~~l~--~----------~~~~~~~L~~l~~~~l~~~~~~~~-~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 281 ND-ALIVRVT--G----------EENGQMRLEELERQGLFIQRMDDS-G--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred CH-HHHHHHc--C----------CCcHHHHHHHHHHCCCeeEeecCC-C--CEEehhHHHHHHHHHHH
Confidence 32 2222111 1 112456788999998875322111 1 24778999999987653
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.6e-06 Score=62.26 Aligned_cols=58 Identities=28% Similarity=0.473 Sum_probs=49.6
Q ss_pred CcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccch-hhccCCCcCEEEecCCC
Q 038430 326 NRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCR 388 (677)
Q Consensus 326 ~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~ 388 (677)
++|++|++++ +.+..+|. .|.++++|++|++++|.++.+|+ .|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~-----n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSN-----NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETS-----STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCC-----CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4789999985 46777774 57899999999999999998876 58999999999999986
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.8e-06 Score=56.14 Aligned_cols=41 Identities=29% Similarity=0.480 Sum_probs=31.1
Q ss_pred CCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCc
Q 038430 354 MHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPT 395 (677)
Q Consensus 354 ~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 395 (677)
++|++|++++|.|+.+|+.+++|++|++|++++|+ +..+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 46888888888888888778888888888888887 665543
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=5e-07 Score=96.53 Aligned_cols=116 Identities=27% Similarity=0.200 Sum_probs=84.0
Q ss_pred CCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcc-cccccccceeecCccCCCcccC
Q 038430 340 NSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMP 418 (677)
Q Consensus 340 ~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p 418 (677)
++.+..+-+++.-++.|+.|+|++|+++..- .+..|++|++|||++|. +..+|.. ...+. |+.|.+++|. ++.+
T Consensus 173 yN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~-l~tL- 247 (1096)
T KOG1859|consen 173 YNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNA-LTTL- 247 (1096)
T ss_pred hhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccH-HHhh-
Confidence 4445555556667788999999999987663 67888999999999888 8888862 23344 8888888884 4333
Q ss_pred CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCc
Q 038430 419 IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGL 464 (677)
Q Consensus 419 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~ 464 (677)
.++.+|.+|+.|++.+|-... ...+.-|..|..|+.|++.+.
T Consensus 248 ~gie~LksL~~LDlsyNll~~----hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 248 RGIENLKSLYGLDLSYNLLSE----HSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hhHHhhhhhhccchhHhhhhc----chhhhHHHHHHHHHHHhhcCC
Confidence 457788888889888776554 445666667777777777764
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.1e-06 Score=92.23 Aligned_cols=212 Identities=26% Similarity=0.287 Sum_probs=136.4
Q ss_pred CCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCccccccccc
Q 038430 324 GLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNM 403 (677)
Q Consensus 324 ~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L 403 (677)
.+..++.+.+. .+.+..+-..++.+.+|.+|++.+|.|..+...+..+++|++|++++|. +..+.. +..++.|
T Consensus 70 ~l~~l~~l~l~-----~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L 142 (414)
T KOG0531|consen 70 SLTSLKELNLR-----QNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLL 142 (414)
T ss_pred HhHhHHhhccc-----hhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccch
Confidence 45566666665 3444444344788899999999999998876558889999999999988 777765 7888889
Q ss_pred ceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccc--cccCCcCCcccccCccCCCChhHHHHhhccCC
Q 038430 404 RSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLEC--LKNFQLIRKCGIEGLSNVSHLDEAERLELKNM 481 (677)
Q Consensus 404 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~--L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~ 481 (677)
+.|++.+| .+..++ ++..+..|+.+++.++.... ... +..+.+++.+.+.+.... .. ..+..+
T Consensus 143 ~~L~l~~N-~i~~~~-~~~~l~~L~~l~l~~n~i~~-------ie~~~~~~~~~l~~l~l~~n~i~----~i--~~~~~~ 207 (414)
T KOG0531|consen 143 KELNLSGN-LISDIS-GLESLKSLKLLDLSYNRIVD-------IENDELSELISLEELDLGGNSIR----EI--EGLDLL 207 (414)
T ss_pred hhheeccC-cchhcc-CCccchhhhcccCCcchhhh-------hhhhhhhhccchHHHhccCCchh----cc--cchHHH
Confidence 99999999 454443 46668888888888776553 222 466666666666553211 10 011112
Q ss_pred cccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCC--CCcE
Q 038430 482 ENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPL--NVEK 559 (677)
Q Consensus 482 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~L~~ 559 (677)
..+..+++..+. ......+.... .|+.
T Consensus 208 ~~l~~~~l~~n~---------------------------------------------------i~~~~~l~~~~~~~L~~ 236 (414)
T KOG0531|consen 208 KKLVLLSLLDNK---------------------------------------------------ISKLEGLNELVMLHLRE 236 (414)
T ss_pred HHHHHhhccccc---------------------------------------------------ceeccCcccchhHHHHH
Confidence 222222333220 01112222223 3899
Q ss_pred EEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccc
Q 038430 560 LWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCH 609 (677)
Q Consensus 560 L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~ 609 (677)
+++.++++...+..+..+.++..|++.++ .+..+..+...+ +..+....
T Consensus 237 l~l~~n~i~~~~~~~~~~~~l~~l~~~~n-~~~~~~~~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 237 LYLSGNRISRSPEGLENLKNLPVLDLSSN-RISNLEGLERLPKLSELWLND 286 (414)
T ss_pred HhcccCccccccccccccccccccchhhc-cccccccccccchHHHhccCc
Confidence 99999998877666778999999999887 555555454555 55555554
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.2e-06 Score=88.15 Aligned_cols=275 Identities=17% Similarity=0.107 Sum_probs=158.8
Q ss_pred CcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcc-cc--ccchhhccCCCcCEEEecCCCCccccCc--ccccc
Q 038430 326 NRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELH-IE--RLPKTLCELYNLQKLDIRGCRNLRELPT--GIGKL 400 (677)
Q Consensus 326 ~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~-i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~--~i~~l 400 (677)
..|+.|.+.++. ......+-..-..+++++.|++.+|. ++ .+-..-..+.+|++|++..|..++..-- ....+
T Consensus 138 g~lk~LSlrG~r--~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCR--AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred cccccccccccc--cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 357778887632 22222222223678888899999887 55 2222335788999999999886654321 24468
Q ss_pred cccceeecCccCCCcc--cCCcCCCCCCCCccCceeeCCCcCCCCccccccccc----CCcCCcccccCccCCCChhHHH
Q 038430 401 KNMRSLLNGLTCSLKY--MPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKN----FQLIRKCGIEGLSNVSHLDEAE 474 (677)
Q Consensus 401 ~~L~~L~l~~~~~~~~--~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~----l~~L~~L~i~~~~~~~~~~~~~ 474 (677)
++|++|++++|..+.. +-.-...++.++.+...++... ....+.. ...+..+++..+..+.+....
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~-------~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~- 287 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL-------ELEALLKAAAYCLEILKLNLQHCNQLTDEDLW- 287 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc-------cHHHHHHHhccChHhhccchhhhccccchHHH-
Confidence 9999999999965544 1111233444555544332211 1111111 111233333344333332211
Q ss_pred HhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhc-CC
Q 038430 475 RLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEAL-QP 553 (677)
Q Consensus 475 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ 553 (677)
..-.++..|+.|..+.+ .+ ..+..+..+ ..
T Consensus 288 -~i~~~c~~lq~l~~s~~-----------------------------------------------t~-~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 288 -LIACGCHALQVLCYSSC-----------------------------------------------TD-ITDEVLWALGQH 318 (483)
T ss_pred -HHhhhhhHhhhhcccCC-----------------------------------------------CC-CchHHHHHHhcC
Confidence 11234677888877766 11 223344444 34
Q ss_pred CCCCcEEEEecCCCCCC--ChhHh-hccCCCeEEEeCCCCCCc--CCC-CCCcc-cceeeccccccceEeCCccccCCCC
Q 038430 554 PLNVEKLWILFNGGNIL--PKWLT-SLTNLSDLKLVFCENCEQ--LPP-LGKLP-LEKLELCHLKSVKRVGNEFLEIEES 626 (677)
Q Consensus 554 ~~~L~~L~l~~~~~~~l--p~~~~-~l~~L~~L~l~~c~~~~~--l~~-l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~ 626 (677)
..+|+.|-++++..-+- -..++ +.+.|+.+++.+|..... +-. -...| |+.|.+++|..++.-+...+...
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~-- 396 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS-- 396 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc--
Confidence 58999999998863211 11233 788999999999955432 222 23567 99999999987776643333222
Q ss_pred CCCCCCCCCCCcccCCCccceeeeccccc-CccccccCCccccCCCccccc
Q 038430 627 EDDPSSSSSSSSVTAFPKVKSLEIKELEE-GNYRITRKENISIIPRLSSLR 676 (677)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~p~L~~L~ 676 (677)
..+...|..+.+.+||. ..-.. +....+++|+.++
T Consensus 397 ------------~c~~~~l~~lEL~n~p~i~d~~L---e~l~~c~~Leri~ 432 (483)
T KOG4341|consen 397 ------------SCSLEGLEVLELDNCPLITDATL---EHLSICRNLERIE 432 (483)
T ss_pred ------------cccccccceeeecCCCCchHHHH---HHHhhCcccceee
Confidence 25677899999999998 32211 2333677887654
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.59 E-value=4.8e-05 Score=52.48 Aligned_cols=42 Identities=33% Similarity=0.333 Sum_probs=33.8
Q ss_pred CCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCC
Q 038430 555 LNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPL 597 (677)
Q Consensus 555 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l 597 (677)
++|++|++++|.+..+|..+++|++|+.|++++| .+.+++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcCC
Confidence 4789999999999999988899999999999999 56665543
|
... |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=4.2e-05 Score=86.02 Aligned_cols=133 Identities=23% Similarity=0.114 Sum_probs=76.1
Q ss_pred CCcCEEEecCcc-cc-ccchhhc-cCCCcCEEEecCCCCc-cccCcccccccccceeecCccCCCcccCCcCCCCCCCCc
Q 038430 354 MHLKYLNLSELH-IE-RLPKTLC-ELYNLQKLDIRGCRNL-RELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRT 429 (677)
Q Consensus 354 ~~L~~L~Ls~~~-i~-~lp~~i~-~l~~L~~L~L~~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 429 (677)
.+|++|+++|.. +. .-|..++ -||.|+.|.+++-... ..+-.-..++++|..||+++++ +..+ .++++|++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 356666666644 22 2233333 4666777666653311 1222234456677777777763 3333 55677777777
Q ss_pred cCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCCh--hHHHHhhccCCcccCceEEEee
Q 038430 430 LDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHL--DEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 430 L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~--~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
|.+.+..... ...+.+|-+|++|+.|+|+.-...... .......-..+++|+.|+.+++
T Consensus 200 L~mrnLe~e~----~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 200 LSMRNLEFES----YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HhccCCCCCc----hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 7777666554 456677777788888888765443332 1112233345788888888866
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00022 Score=73.97 Aligned_cols=80 Identities=24% Similarity=0.459 Sum_probs=47.4
Q ss_pred CceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCc-cccccchhhccCCCcCE
Q 038430 303 GKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSEL-HIERLPKTLCELYNLQK 381 (677)
Q Consensus 303 ~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~-~i~~lp~~i~~l~~L~~ 381 (677)
..+++|++++|.+..+| .+ .++|+.|.+.+ +..+..+|+.+. .+|++|++++| .+..+|++ |+.
T Consensus 52 ~~l~~L~Is~c~L~sLP-~L--P~sLtsL~Lsn----c~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 52 RASGRLYIKDCDIESLP-VL--PNELTEITIEN----CNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred cCCCEEEeCCCCCcccC-CC--CCCCcEEEccC----CCCcccCCchhh--hhhhheEccCcccccccccc------cce
Confidence 34557777777777666 21 23577777776 555566665442 57777777777 46666643 455
Q ss_pred EEecCC--CCccccCccc
Q 038430 382 LDIRGC--RNLRELPTGI 397 (677)
Q Consensus 382 L~L~~~--~~l~~lp~~i 397 (677)
|++..+ ..+..+|.++
T Consensus 117 L~L~~n~~~~L~~LPssL 134 (426)
T PRK15386 117 LEIKGSATDSIKNVPNGL 134 (426)
T ss_pred EEeCCCCCcccccCcchH
Confidence 555443 2345556543
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.012 Score=59.27 Aligned_cols=147 Identities=12% Similarity=0.132 Sum_probs=90.4
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCCch---HHHHHHHHHHHc-CCccEEEEEECCcCCCccchhhhhhhhcCC---CCCcE
Q 038430 6 SDTFEEISVANAIIEGLGESTSSLSE---FQSLMSHIHRSI-EGKKNFLILNDVWDGDYNKWAPFFLCLNHG---LHGSK 78 (677)
Q Consensus 6 s~~~~~~~i~~~i~~~l~~~~~~~~~---~~~~~~~i~~~L-~~kr~LlVlDdvw~~~~~~~~~l~~~~~~~---~~gS~ 78 (677)
....+..++++.|+..++........ ...+...+.... .+++.+||+||+|......++.+....... .....
T Consensus 79 ~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~ 158 (269)
T TIGR03015 79 NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQ 158 (269)
T ss_pred CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEE
Confidence 34567889999999998765432221 122333333333 578899999999987655566655332211 22224
Q ss_pred EEEEcCchHHHHhcC----------CCCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHH
Q 038430 79 ILVTTRNELVARMMG----------STNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKV 148 (677)
Q Consensus 79 IiiTTR~~~v~~~~~----------~~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 148 (677)
|++|.... ...... ....+++++++.+|..+++...+-.........--.+....|++.|+|.|..|..
T Consensus 159 vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~ 237 (269)
T TIGR03015 159 IFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINI 237 (269)
T ss_pred EEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHH
Confidence 55665433 222211 1236789999999999988876532211111112246788899999999999999
Q ss_pred HHHHh
Q 038430 149 IGNLL 153 (677)
Q Consensus 149 ig~~L 153 (677)
++..+
T Consensus 238 l~~~~ 242 (269)
T TIGR03015 238 LCDRL 242 (269)
T ss_pred HHHHH
Confidence 88766
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00024 Score=68.77 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=37.5
Q ss_pred hhcCCCCCCcEEEEecCCCCCCC--hhHhhccCCCeEEEeCCCCCCcCCC-------CCCcc-cceeecc
Q 038430 549 EALQPPLNVEKLWILFNGGNILP--KWLTSLTNLSDLKLVFCENCEQLPP-------LGKLP-LEKLELC 608 (677)
Q Consensus 549 ~~l~~~~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~c~~~~~l~~-------l~~l~-L~~L~l~ 608 (677)
.+..+++.+--|+|..+++.... +.+..++.|+-|.+++++....+.. ++.|+ ++.|+=+
T Consensus 218 k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 218 KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 34455666667777776654221 2244788888999988877766553 34556 6665544
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00018 Score=68.68 Aligned_cols=93 Identities=16% Similarity=0.206 Sum_probs=60.0
Q ss_pred ccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccc---c-ccc-------hhhccCCCcCEEEecCCC
Q 038430 320 MSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHI---E-RLP-------KTLCELYNLQKLDIRGCR 388 (677)
Q Consensus 320 ~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i---~-~lp-------~~i~~l~~L~~L~L~~~~ 388 (677)
..+..+..+..+++++|.+.......+-..+.+-.+|+..+++.-.. . .+| +.+-++++|++.+|++|-
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 34445777888888875443333334445566667788877766431 1 333 344578888888888887
Q ss_pred CccccCc----ccccccccceeecCccC
Q 038430 389 NLRELPT----GIGKLKNMRSLLNGLTC 412 (677)
Q Consensus 389 ~l~~lp~----~i~~l~~L~~L~l~~~~ 412 (677)
+....|. .|.+-+.|.||.+++|.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCC
Confidence 6655554 35566788888888883
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=5.4e-05 Score=64.75 Aligned_cols=100 Identities=20% Similarity=0.218 Sum_probs=63.1
Q ss_pred EEEEEecCCCccc---ccccCCCcccEEEeCCCCCCCCCCccCCccc-CCCCCcCEEEecCccccccchhhccCCCcCEE
Q 038430 307 HLGLKFKGGASFP---MSIHGLNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLPKTLCELYNLQKL 382 (677)
Q Consensus 307 ~L~l~~~~~~~~p---~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~-~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L 382 (677)
.++++.|.+..++ ..+....+|...+++ ++.+..+|+.| ...+.+..|++++|.|..+|..+..++.|+.|
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls-----~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLS-----DNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecc-----cchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 3444555444333 233344456666666 45566666665 34446777777777777777777777777777
Q ss_pred EecCCCCccccCcccccccccceeecCccC
Q 038430 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTC 412 (677)
Q Consensus 383 ~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~ 412 (677)
+++.|+ +...|+-+..|.+|..|+..+|.
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHhcCCCCc
Confidence 777777 66666666667777777777663
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=7.5e-06 Score=87.84 Aligned_cols=123 Identities=24% Similarity=0.239 Sum_probs=65.8
Q ss_pred ceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchh-hccCCCcCEE
Q 038430 304 KVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKT-LCELYNLQKL 382 (677)
Q Consensus 304 ~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L 382 (677)
++...+++.|.+..+..++.-++.|+.|+|++ +.+.+.- .+..+++|++|||++|.+..+|.- ...+ +|+.|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLsh-----Nk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L 237 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSH-----NKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLL 237 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccch-----hhhhhhH-HHHhcccccccccccchhccccccchhhh-hheee
Confidence 44455555555555555555566666666664 2333332 455666666666666666655542 2222 26666
Q ss_pred EecCCCCccccCcccccccccceeecCccCCCcccC--CcCCCCCCCCccCceeeC
Q 038430 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMP--IGISKLTSLRTLDKFAVG 436 (677)
Q Consensus 383 ~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~l~~~~ 436 (677)
++++|. ++.+-. +.+|++|+.||+++|- +.... .-++.|..|+.|++-+|.
T Consensus 238 ~lrnN~-l~tL~g-ie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 238 NLRNNA-LTTLRG-IENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eecccH-HHhhhh-HHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 666665 555544 6666666666666662 22111 113444555555555443
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=8.1e-05 Score=63.72 Aligned_cols=89 Identities=22% Similarity=0.325 Sum_probs=77.5
Q ss_pred CCceEEEEEEecCCCcccccccC-CCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcC
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHG-LNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQ 380 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~-l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~ 380 (677)
...+..+++++|.+..+|..|.. ++.+.+|++. ++.+..+|+.+..++.||.|+++.|.+...|..|..|.+|-
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~-----~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLA-----NNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLD 126 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcc-----hhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHH
Confidence 44678899999999999976654 4588999998 67788999999999999999999999999999988899999
Q ss_pred EEEecCCCCccccCcc
Q 038430 381 KLDIRGCRNLRELPTG 396 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~~ 396 (677)
.|+..++. ..++|..
T Consensus 127 ~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 127 MLDSPENA-RAEIDVD 141 (177)
T ss_pred HhcCCCCc-cccCcHH
Confidence 99999887 7777765
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.024 Score=63.31 Aligned_cols=243 Identities=16% Similarity=0.239 Sum_probs=153.0
Q ss_pred CeEEecC-CCCHHHHHHHHHHHhcCCCCCCc-------------hHHHHHHHHHHHcC--CccEEEEEECCcCCCcc-ch
Q 038430 1 MWVCVSD-TFEEISVANAIIEGLGESTSSLS-------------EFQSLMSHIHRSIE--GKKNFLILNDVWDGDYN-KW 63 (677)
Q Consensus 1 ~WV~vs~-~~~~~~i~~~i~~~l~~~~~~~~-------------~~~~~~~~i~~~L~--~kr~LlVlDdvw~~~~~-~~ 63 (677)
.|.+... +-++..+...++..|+...+... +...+...+...+. .++..+||||-.-.... --
T Consensus 68 ~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~ 147 (894)
T COG2909 68 AWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALH 147 (894)
T ss_pred eEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHH
Confidence 4888866 55788899999998886554433 33335556666555 47899999998654333 33
Q ss_pred hhhhhhhcCCCCCcEEEEEcCchH---HHHhcCCCCeEecC----CCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHH
Q 038430 64 APFFLCLNHGLHGSKILVTTRNEL---VARMMGSTNIIFIE----QLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIA 136 (677)
Q Consensus 64 ~~l~~~~~~~~~gS~IiiTTR~~~---v~~~~~~~~~~~v~----~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~ 136 (677)
..+...+.+...+=.+|||||..- +++.--.+...+|. .++.+|+-++|.... +. +-...-++.+.
T Consensus 148 ~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~---~l----~Ld~~~~~~L~ 220 (894)
T COG2909 148 EALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG---SL----PLDAADLKALY 220 (894)
T ss_pred HHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC---CC----CCChHHHHHHH
Confidence 335555566677889999999873 22221123344443 388999999998753 11 22234477889
Q ss_pred HHhcCCchHHHHHHHHhccCCCHHHHHHHHhh---hhhhhhhcCCCccceeecccccCCCchhhhHHHhhhccCCCCcee
Q 038430 137 RKCKGLPIAAKVIGNLLRSKSTIKDWQRILDS---EMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNM 213 (677)
Q Consensus 137 ~~c~GlPLal~~ig~~L~~~~~~~~w~~~l~~---~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp~~~~i 213 (677)
+...|-+-|+..++=.++...+.+.--..+.. ..+++- -.+ -+|.||+ +++..++-+|+++.-
T Consensus 221 ~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dYL--~ee-------Vld~Lp~--~l~~FLl~~svl~~f--- 286 (894)
T COG2909 221 DRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSDYL--VEE-------VLDRLPP--ELRDFLLQTSVLSRF--- 286 (894)
T ss_pred hhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHHHH--HHH-------HHhcCCH--HHHHHHHHHHhHHHh---
Confidence 99999999999998888744434333332221 001110 011 2467888 899999999888643
Q ss_pred cHHHHHHHHHHcCCcCcchhhhHHHhHHHHHHHHHHccCccccccCCCCCeeeEEeChhHHHHHHHH
Q 038430 214 YKEELISLWMAQGYLNAEEYEEKEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFV 280 (677)
Q Consensus 214 ~~~~li~~wi~~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mhdli~d~~~~~ 280 (677)
-.+++... +.++.+...+++|..++++...-++.. ..|+.|.++.+|...-
T Consensus 287 -~~eL~~~L------------tg~~ng~amLe~L~~~gLFl~~Ldd~~---~WfryH~LFaeFL~~r 337 (894)
T COG2909 287 -NDELCNAL------------TGEENGQAMLEELERRGLFLQRLDDEG---QWFRYHHLFAEFLRQR 337 (894)
T ss_pred -hHHHHHHH------------hcCCcHHHHHHHHHhCCCceeeecCCC---ceeehhHHHHHHHHhh
Confidence 12333322 223456778999999999875433322 2588999998887543
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0007 Score=76.36 Aligned_cols=36 Identities=22% Similarity=0.038 Sum_probs=18.3
Q ss_pred cCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeC
Q 038430 551 LQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVF 587 (677)
Q Consensus 551 l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~ 587 (677)
..++++|..||++++++..+ ..+++|+||+.|.+.+
T Consensus 169 c~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN 204 (699)
T ss_pred hhccCccceeecCCCCccCc-HHHhccccHHHHhccC
Confidence 34445555555555554444 3445555555555543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.00042 Score=67.13 Aligned_cols=61 Identities=25% Similarity=0.220 Sum_probs=41.4
Q ss_pred CCCCCcCEEEecCcccc---ccchhhccCCCcCEEEecCCCCccccCccc-ccccccceeecCccC
Q 038430 351 GKLMHLKYLNLSELHIE---RLPKTLCELYNLQKLDIRGCRNLRELPTGI-GKLKNMRSLLNGLTC 412 (677)
Q Consensus 351 ~~l~~L~~L~Ls~~~i~---~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~l~~~~ 412 (677)
....+++.|||.+|.|+ ++-.-+.+|+.|++|+|+.|+ +...-... ..+.+|+.|.+.++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGTG 132 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCCC
Confidence 34678899999999887 344446688999999998876 33221112 345678888887764
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.21 Score=53.29 Aligned_cols=252 Identities=13% Similarity=0.111 Sum_probs=135.6
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCC-C-CCchHHHHHHHHHHHcC--CccEEEEEECCcCCC----ccchhhhhhhhcCC
Q 038430 2 WVCVSDTFEEISVANAIIEGLGEST-S-SLSEFQSLMSHIHRSIE--GKKNFLILNDVWDGD----YNKWAPFFLCLNHG 73 (677)
Q Consensus 2 WV~vs~~~~~~~i~~~i~~~l~~~~-~-~~~~~~~~~~~i~~~L~--~kr~LlVlDdvw~~~----~~~~~~l~~~~~~~ 73 (677)
+|+.....+...++.+|++++.... . ...+.++....+.+.++ ++..+||+|+++... ......+...+...
T Consensus 90 ~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~ 169 (394)
T PRK00411 90 YINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY 169 (394)
T ss_pred EEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc
Confidence 4555566688899999999997632 1 22355667777777775 456899999997642 12223333222222
Q ss_pred CCCcE--EEEEcCchHHHHhcC-------CCCeEecCCCChHHHHHHHHHHhhcC--CCCCCCcchhHHHHHHHHHhcCC
Q 038430 74 LHGSK--ILVTTRNELVARMMG-------STNIIFIEQLTEEECWSLFKRLAFFG--CSFEDCERLEPIGQKIARKCKGL 142 (677)
Q Consensus 74 ~~gS~--IiiTTR~~~v~~~~~-------~~~~~~v~~L~~~ea~~LF~~~af~~--~~~~~~~~~~~~~~~i~~~c~Gl 142 (677)
.+++ ||.++.+..+..... ....+.+++++.++..+++...+-.. ...-..+.++.+++.+....|..
T Consensus 170 -~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 248 (394)
T PRK00411 170 -PGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDA 248 (394)
T ss_pred -CCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcH
Confidence 3333 566666554433221 12467899999999999998876221 11112233444444444445667
Q ss_pred chHHHHHHHHh----c-cC--CCHHHHHHHHhhhhhhhhhcCCCccceeecccccCCCchhhhHHHhhhccCCC--Ccee
Q 038430 143 PIAAKVIGNLL----R-SK--STIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPK--DYNM 213 (677)
Q Consensus 143 PLal~~ig~~L----~-~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp~--~~~i 213 (677)
+.|+..+-.+. . +. -+.+..+.+++.... ....-.+..|+. +.|..+.-++...+ ...+
T Consensus 249 r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~----------~~~~~~~~~L~~--~~k~~L~ai~~~~~~~~~~~ 316 (394)
T PRK00411 249 RVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEI----------VHLSEVLRTLPL--HEKLLLRAIVRLLKKGGDEV 316 (394)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHH----------HHHHHHHhcCCH--HHHHHHHHHHHHHhcCCCcc
Confidence 88877664332 1 11 245566666553210 112234667777 44444433332211 1234
Q ss_pred cHHHHHHHH--HHc--CCcCcchhhhHHHhHHHHHHHHHHccCcccccc--CCCCCeeeEEeCh
Q 038430 214 YKEELISLW--MAQ--GYLNAEEYEEKEMTGEECFNILAARSFFQEFEK--NDDDDIMSCKMHD 271 (677)
Q Consensus 214 ~~~~li~~w--i~~--g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~--~~~~~~~~~~mhd 271 (677)
...++.... +++ |.- +. .......+++.|.+.+++..... +..|+.+.+..+-
T Consensus 317 ~~~~i~~~y~~l~~~~~~~-~~----~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~ 375 (394)
T PRK00411 317 TTGEVYEEYKELCEELGYE-PR----THTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLSY 375 (394)
T ss_pred cHHHHHHHHHHHHHHcCCC-cC----cHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecC
Confidence 455544322 221 221 11 11234668999999999986543 3345555565543
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0015 Score=62.58 Aligned_cols=61 Identities=28% Similarity=0.310 Sum_probs=33.2
Q ss_pred cCCCCCcCEEEecCc--ccc-ccchhhccCCCcCEEEecCCCCcc---ccCcccccccccceeecCccC
Q 038430 350 VGKLMHLKYLNLSEL--HIE-RLPKTLCELYNLQKLDIRGCRNLR---ELPTGIGKLKNMRSLLNGLTC 412 (677)
Q Consensus 350 ~~~l~~L~~L~Ls~~--~i~-~lp~~i~~l~~L~~L~L~~~~~l~---~lp~~i~~l~~L~~L~l~~~~ 412 (677)
+..|++|++|.++.| ++. .++...-++++|++|++++|+ ++ .+++ +..+.+|..|++.+|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~p-l~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRP-LKELENLKSLDLFNCS 127 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccch-hhhhcchhhhhcccCC
Confidence 334566666666666 333 344444455666666666665 32 2222 4455566666666663
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.028 Score=51.64 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=50.7
Q ss_pred CCccEEEEEECCcCCCccc-------hhh-hhhhhcC-CCCCcEEEEEcCchHH---HHhcCCCCeEecCCCChHHHHHH
Q 038430 44 EGKKNFLILNDVWDGDYNK-------WAP-FFLCLNH-GLHGSKILVTTRNELV---ARMMGSTNIIFIEQLTEEECWSL 111 (677)
Q Consensus 44 ~~kr~LlVlDdvw~~~~~~-------~~~-l~~~~~~-~~~gS~IiiTTR~~~v---~~~~~~~~~~~v~~L~~~ea~~L 111 (677)
+.+++++|+|++++..... +.. +...++. ..++.+||||||.... .........++|++|++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 4789999999997753211 222 3233333 3568999999998766 33344456899999999999998
Q ss_pred HHHH
Q 038430 112 FKRL 115 (677)
Q Consensus 112 F~~~ 115 (677)
+.++
T Consensus 159 ~~~~ 162 (166)
T PF05729_consen 159 LRKY 162 (166)
T ss_pred HHHH
Confidence 8764
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.017 Score=56.49 Aligned_cols=96 Identities=16% Similarity=0.175 Sum_probs=63.2
Q ss_pred EEEEEECCcCCC-ccchhh-hhhhhcCC-CCCcEEEE-EcCc---------hHHHHhcCCCCeEecCCCChHHHHHHHHH
Q 038430 48 NFLILNDVWDGD-YNKWAP-FFLCLNHG-LHGSKILV-TTRN---------ELVARMMGSTNIIFIEQLTEEECWSLFKR 114 (677)
Q Consensus 48 ~LlVlDdvw~~~-~~~~~~-l~~~~~~~-~~gS~Iii-TTR~---------~~v~~~~~~~~~~~v~~L~~~ea~~LF~~ 114 (677)
-+||+||+|... ...|+. +...+... ..|+.||| |++. ..+..++....+++++++++++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 489999998742 245553 33333322 24666655 4543 47777777778999999999999999999
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHhcCCchHHH
Q 038430 115 LAFFGCSFEDCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 115 ~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
.++...- .--+++..-+++++.|-.-++.
T Consensus 173 ~a~~~~l----~l~~~v~~~L~~~~~~d~r~l~ 201 (229)
T PRK06893 173 NAYQRGI----ELSDEVANFLLKRLDRDMHTLF 201 (229)
T ss_pred HHHHcCC----CCCHHHHHHHHHhccCCHHHHH
Confidence 9874432 1223456667777776655443
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.00099 Score=63.81 Aligned_cols=188 Identities=13% Similarity=0.065 Sum_probs=123.1
Q ss_pred CCceEEEEEEecCCCc-----ccccccCCCcccEEEeCCCCCCCCCCccC-------CcccCCCCCcCEEEecCcccc-c
Q 038430 302 GGKVRHLGLKFKGGAS-----FPMSIHGLNRLRTLLIDDESPPNSSLDKI-------PENVGKLMHLKYLNLSELHIE-R 368 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-------p~~~~~l~~L~~L~Ls~~~i~-~ 368 (677)
...+..+++++|.+.. +...+.+-.+|+..++++... +-.-..+ ...+-+|++|+..+||.|.+. .
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ft-gr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFT-GRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhh-cccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 5567788899988742 334566677888888875321 1111122 234567899999999999876 4
Q ss_pred cch----hhccCCCcCEEEecCCCCccccCc--------------ccccccccceeecCccCCCcccCCc-----CCCCC
Q 038430 369 LPK----TLCELYNLQKLDIRGCRNLRELPT--------------GIGKLKNMRSLLNGLTCSLKYMPIG-----ISKLT 425 (677)
Q Consensus 369 lp~----~i~~l~~L~~L~L~~~~~l~~lp~--------------~i~~l~~L~~L~l~~~~~~~~~p~~-----i~~l~ 425 (677)
.|+ -|++-+.|.+|.+++|. ++.+-. ....-|.|+..+...| .+...|.. +..=.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~~a~~l~sh~ 185 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKELSAALLESHE 185 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHHHHHHHHhhc
Confidence 444 36788899999999887 554322 1234477888888887 45554432 22225
Q ss_pred CCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 426 SLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 426 ~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
.|+++.+..+++.........+..+..+++|+.|++....-....+......+...+.|+.|.+..|
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 7888888888776422223344566677888888887643333344556667788889999999888
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0057 Score=56.35 Aligned_cols=102 Identities=26% Similarity=0.238 Sum_probs=55.1
Q ss_pred cccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhc-cCCCcCEEEecCCCCccccCc--cccccccc
Q 038430 327 RLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLC-ELYNLQKLDIRGCRNLRELPT--GIGKLKNM 403 (677)
Q Consensus 327 ~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~-~l~~L~~L~L~~~~~l~~lp~--~i~~l~~L 403 (677)
....+++++ +.+..++ .+..+..|..|.+.+|+|+.+-+.+. -+++|++|.|.+|+ +.++-+ .+..+++|
T Consensus 43 ~~d~iDLtd-----Ndl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 43 QFDAIDLTD-----NDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKL 115 (233)
T ss_pred ccceecccc-----cchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCcc
Confidence 344555553 3444442 35566777777777777776644443 35567777777766 544432 24556666
Q ss_pred ceeecCccCCCcccCC----cCCCCCCCCccCceeeC
Q 038430 404 RSLLNGLTCSLKYMPI----GISKLTSLRTLDKFAVG 436 (677)
Q Consensus 404 ~~L~l~~~~~~~~~p~----~i~~l~~L~~L~l~~~~ 436 (677)
++|.+-+|. +...+. -+..+++|++|+...+.
T Consensus 116 ~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 116 EYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 666666653 211111 13455566666555443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.00056 Score=65.69 Aligned_cols=102 Identities=24% Similarity=0.235 Sum_probs=63.2
Q ss_pred CCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCc--ccccccc
Q 038430 325 LNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPT--GIGKLKN 402 (677)
Q Consensus 325 l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~--~i~~l~~ 402 (677)
+.+.+.|++-+ ..+..+ ..+..|+.|++|.||-|+|+++ ..+..+++|+.|+|+.|. +..+.. .+.++++
T Consensus 18 l~~vkKLNcwg-----~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWG-----CGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccC-----CCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCch
Confidence 34556666653 233333 2246777888888888888777 346777888888888776 555443 3667777
Q ss_pred cceeecCccCCCcccCCc-----CCCCCCCCccCcee
Q 038430 403 MRSLLNGLTCSLKYMPIG-----ISKLTSLRTLDKFA 434 (677)
Q Consensus 403 L~~L~l~~~~~~~~~p~~-----i~~l~~L~~L~l~~ 434 (677)
|+.|.+..|...+.-+.. +.-|.+|+.|+-..
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhccCcc
Confidence 788777777555544432 34456666666443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.011 Score=54.50 Aligned_cols=103 Identities=23% Similarity=0.259 Sum_probs=78.5
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccC-CCCCcCEEEecCccccccc--hhhccCCC
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVG-KLMHLKYLNLSELHIERLP--KTLCELYN 378 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~-~l~~L~~L~Ls~~~i~~lp--~~i~~l~~ 378 (677)
......+++.+|.+..++ .|..+++|.+|.+. ++.+..+-+.+. .+++|..|.|.+|+|..+- ..+..++.
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~-----nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLN-----NNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEec-----CCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence 345567888888887665 67889999999998 456666655563 4567999999999987542 23667899
Q ss_pred cCEEEecCCCCccccCc----ccccccccceeecCcc
Q 038430 379 LQKLDIRGCRNLRELPT----GIGKLKNMRSLLNGLT 411 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp~----~i~~l~~L~~L~l~~~ 411 (677)
|++|.+-+|+ +..... -+.++++|+.||..+-
T Consensus 115 L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 115 LEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 9999999987 555443 3788999999999865
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.0041 Score=35.60 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=12.6
Q ss_pred CcCEEEecCccccccchhhcc
Q 038430 355 HLKYLNLSELHIERLPKTLCE 375 (677)
Q Consensus 355 ~L~~L~Ls~~~i~~lp~~i~~ 375 (677)
+|++|++++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665543
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.0018 Score=71.17 Aligned_cols=38 Identities=16% Similarity=0.002 Sum_probs=20.7
Q ss_pred CCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 453 FQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 453 l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
+++|+.|.+..+..++. .....-...+++|++|++++|
T Consensus 268 c~~L~~L~l~~c~~lt~--~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTD--EGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred CCCcceEccCCCCccch--hHHHHHHHhcCcccEEeeecC
Confidence 44566665554443222 223333455677888888777
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.00066 Score=65.22 Aligned_cols=101 Identities=21% Similarity=0.137 Sum_probs=68.3
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccch--hhccCCCc
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPK--TLCELYNL 379 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~--~i~~l~~L 379 (677)
..+++.|++.++++..+. ....|+.|.+|.|+ -+.+..+ +.+..+++|+.|.|+.|.|.++-. -+.++++|
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLS-----vNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLS-----VNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEee-----ccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 346677777777777664 45567888888887 4455555 346778888888888888775533 36678888
Q ss_pred CEEEecCCCCccccCc-----ccccccccceeecC
Q 038430 380 QKLDIRGCRNLRELPT-----GIGKLKNMRSLLNG 409 (677)
Q Consensus 380 ~~L~L~~~~~l~~lp~-----~i~~l~~L~~L~l~ 409 (677)
++|.|..|+-.+.-+. .+..|++|+.||-.
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 8888887765554443 24567777777644
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.013 Score=56.33 Aligned_cols=84 Identities=21% Similarity=0.272 Sum_probs=58.1
Q ss_pred cCCCCCcCEEEecCccccccchhhccCCCcCEEEecCC--CCccccCcccccccccceeecCccCCCcccCCc---CCCC
Q 038430 350 VGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGC--RNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIG---ISKL 424 (677)
Q Consensus 350 ~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~--~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~---i~~l 424 (677)
...+..|++|++.++.++++ ..+..|++|+.|.++.| +....++.-..++++|++|++++|. +.. +.+ +..+
T Consensus 39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKEL 115 (260)
T ss_pred cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhh
Confidence 34456777777777777655 34567899999999999 5455666666777999999999994 332 333 3445
Q ss_pred CCCCccCceeeC
Q 038430 425 TSLRTLDKFAVG 436 (677)
Q Consensus 425 ~~L~~L~l~~~~ 436 (677)
.+|..|+++++.
T Consensus 116 ~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 116 ENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCC
Confidence 556666666554
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.26 Score=48.03 Aligned_cols=100 Identities=15% Similarity=0.091 Sum_probs=53.0
Q ss_pred CccEEEEEECCcCCC------ccchhhhhhhhcC---CCCCcEEEEEcCchHHHHh--------cCCCCeEecCCCChHH
Q 038430 45 GKKNFLILNDVWDGD------YNKWAPFFLCLNH---GLHGSKILVTTRNELVARM--------MGSTNIIFIEQLTEEE 107 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~------~~~~~~l~~~~~~---~~~gS~IiiTTR~~~v~~~--------~~~~~~~~v~~L~~~e 107 (677)
+++++||+||+.... ..-...+...+.. ..+.+.|+++| ...+... .+....+.+++|+.++
T Consensus 117 ~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e 195 (234)
T PF01637_consen 117 GKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGS-SDSLMEEFLDDKSPLFGRFSHIELKPLSKEE 195 (234)
T ss_dssp HCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEES-SHHHHHHTT-TTSTTTT---EEEE----HHH
T ss_pred CCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECC-chHHHHHhhcccCccccccceEEEeeCCHHH
Confidence 355999999996543 0111223333333 34445454444 4444443 1223469999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHH
Q 038430 108 CWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKV 148 (677)
Q Consensus 108 a~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 148 (677)
+++++...+-.. ... +.-.+..++|...+||.|..|.-
T Consensus 196 ~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 196 AREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHHHCC---------HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 999998864222 111 12344568899999999988753
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.025 Score=32.36 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=12.6
Q ss_pred CcCEEEecCCCCccccCccccc
Q 038430 378 NLQKLDIRGCRNLRELPTGIGK 399 (677)
Q Consensus 378 ~L~~L~L~~~~~l~~lp~~i~~ 399 (677)
+|++||+++|. ++.+|..+++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 46666776664 5566665443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.013 Score=64.53 Aligned_cols=141 Identities=21% Similarity=0.173 Sum_probs=79.0
Q ss_pred cCCCcCEEEecCCCCccc--cCcccccccccceeecCcc-CCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccc
Q 038430 375 ELYNLQKLDIRGCRNLRE--LPTGIGKLKNMRSLLNGLT-CSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLK 451 (677)
Q Consensus 375 ~l~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~l~~~-~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~ 451 (677)
.+++|+.|.+.+|..+.. +-.....+++|+.|++++| ......+. .......
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------------------~~~~~~~ 240 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL-------------------------LLLLLLS 240 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh-------------------------Hhhhhhh
Confidence 478888888888876665 3344667788888888874 11111110 0111222
Q ss_pred cCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCcccc
Q 038430 452 NFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVD 531 (677)
Q Consensus 452 ~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (677)
.+.+|+.++++.+..+.+..- ......+++|+.|.+..|.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l--~~l~~~c~~L~~L~l~~c~-------------------------------------- 280 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGL--SALASRCPNLETLSLSNCS-------------------------------------- 280 (482)
T ss_pred hcCCcCccchhhhhccCchhH--HHHHhhCCCcceEccCCCC--------------------------------------
Confidence 234455555555443222211 1112237899999977661
Q ss_pred chhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCC---CChhHhhccCCCeEEEeCCC
Q 038430 532 GEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNI---LPKWLTSLTNLSDLKLVFCE 589 (677)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---lp~~~~~l~~L~~L~l~~c~ 589 (677)
...+..+......+++|++|+++++.... +.....++++|+.|.+..+.
T Consensus 281 ---------~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 281 ---------NLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN 332 (482)
T ss_pred ---------ccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC
Confidence 12334444555667889999999887642 23333367777776665543
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.065 Score=28.41 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=5.4
Q ss_pred CcCEEEecCcccccc
Q 038430 355 HLKYLNLSELHIERL 369 (677)
Q Consensus 355 ~L~~L~Ls~~~i~~l 369 (677)
+|+.|++++|.++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
|
... |
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=93.09 E-value=2.1 Score=41.47 Aligned_cols=99 Identities=14% Similarity=0.134 Sum_probs=61.1
Q ss_pred EEEEEECCcCCCcc-ch-hhhhhhhcCC-CCCcEEEEEcCch---------HHHHhcCCCCeEecCCCChHHHHHHHHHH
Q 038430 48 NFLILNDVWDGDYN-KW-APFFLCLNHG-LHGSKILVTTRNE---------LVARMMGSTNIIFIEQLTEEECWSLFKRL 115 (677)
Q Consensus 48 ~LlVlDdvw~~~~~-~~-~~l~~~~~~~-~~gS~IiiTTR~~---------~v~~~~~~~~~~~v~~L~~~ea~~LF~~~ 115 (677)
-+||+||++..... .| ..+...+... ..+.+||+||+.. .+...+.....+++++++.++-..++...
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH
Confidence 38999999765322 23 3344444321 2344799998743 23333333457999999999999998775
Q ss_pred hhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHH
Q 038430 116 AFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIG 150 (677)
Q Consensus 116 af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig 150 (677)
+-.... .--.+....++..+.|.|..+..+-
T Consensus 172 ~~~~~~----~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 172 AARRGL----QLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHcCC----CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 532211 1223456777778888888776553
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.15 Score=44.74 Aligned_cols=83 Identities=16% Similarity=0.166 Sum_probs=59.1
Q ss_pred CeEEecCCCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHcCCcc-EEEEEECCcCC-CccchhhhhhhhcCCCCCcE
Q 038430 1 MWVCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIEGKK-NFLILNDVWDG-DYNKWAPFFLCLNHGLHGSK 78 (677)
Q Consensus 1 ~WV~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~i~~~L~~kr-~LlVlDdvw~~-~~~~~~~l~~~~~~~~~gS~ 78 (677)
+||+++...+...+.+.|+++++.......+..++...+.+.+...+ .+||+|++..- ....++.+..... ..+-+
T Consensus 41 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~ 118 (131)
T PF13401_consen 41 IYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIK 118 (131)
T ss_dssp EEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCe
Confidence 47788887799999999999999887665667777788888887554 59999999765 4444455544444 45667
Q ss_pred EEEEcCc
Q 038430 79 ILVTTRN 85 (677)
Q Consensus 79 IiiTTR~ 85 (677)
||+..+.
T Consensus 119 vvl~G~~ 125 (131)
T PF13401_consen 119 VVLVGTP 125 (131)
T ss_dssp EEEEESS
T ss_pred EEEEECh
Confidence 7776654
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=92.83 E-value=3.4 Score=42.83 Aligned_cols=155 Identities=24% Similarity=0.222 Sum_probs=81.2
Q ss_pred CcEEEEEcCchHHHHhcC--CCCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHHh
Q 038430 76 GSKILVTTRNELVARMMG--STNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLL 153 (677)
Q Consensus 76 gS~IiiTTR~~~v~~~~~--~~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L 153 (677)
.+-|..|||...+..... ....+++++++.++..+++.+.+-.... .--.+....|++.|+|.|-.+..+...+
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~ia~~~~G~pR~a~~~l~~~ 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV----EIDEEGALEIARRSRGTPRIANRLLRRV 226 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 455667777443332211 1346899999999999999987743322 1233568899999999996554444322
Q ss_pred ccCCCHHHHHHHHhhhhhhhhhcCCCccceeecccccCCCchhhhHHHh-hhccCCCCceecHHHHHHHHHHcCCcCcch
Q 038430 154 RSKSTIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFS-YCAVFPKDYNMYKEELISLWMAQGYLNAEE 232 (677)
Q Consensus 154 ~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl-~~a~fp~~~~i~~~~li~~wi~~g~i~~~~ 232 (677)
. .|.......... ...-......+...|..|+. ..+..+. ....|..+ .+....+.... |
T Consensus 227 ~------~~a~~~~~~~I~-~~~v~~~l~~~~~~~~~l~~--~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g------ 287 (328)
T PRK00080 227 R------DFAQVKGDGVIT-KEIADKALDMLGVDELGLDE--MDRKYLRTIIEKFGGG-PVGLDTLAAAL---G------ 287 (328)
T ss_pred H------HHHHHcCCCCCC-HHHHHHHHHHhCCCcCCCCH--HHHHHHHHHHHHcCCC-ceeHHHHHHHH---C------
Confidence 1 111110000000 00001112234566677776 4455553 44555554 34444443221 1
Q ss_pred hhhHHHhHHHHHH-HHHHccCccc
Q 038430 233 YEEKEMTGEECFN-ILAARSFFQE 255 (677)
Q Consensus 233 ~~~~~~~~~~~~~-~L~~~sll~~ 255 (677)
.....+++.++ .|++.+++..
T Consensus 288 --~~~~~~~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 288 --EERDTIEDVYEPYLIQQGFIQR 309 (328)
T ss_pred --CCcchHHHHhhHHHHHcCCccc
Confidence 01123444566 8889999864
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=92.39 E-value=2.3 Score=43.54 Aligned_cols=72 Identities=24% Similarity=0.141 Sum_probs=47.6
Q ss_pred CcEEEEEcCchHHHHhcC--CCCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHH
Q 038430 76 GSKILVTTRNELVARMMG--STNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGN 151 (677)
Q Consensus 76 gS~IiiTTR~~~v~~~~~--~~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~ 151 (677)
.+-|..|||...+....- ....+++++++.++..+++.+.+-.... . --.+....+++.|+|.|-.+..++.
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~---~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV-E---IEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-C---cCHHHHHHHHHHhCCCcchHHHHHH
Confidence 455666777644333210 1346899999999999999987743222 1 2234567899999999976655554
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=92.37 E-value=3.6 Score=43.34 Aligned_cols=240 Identities=11% Similarity=0.051 Sum_probs=120.5
Q ss_pred eEEecCCCCHHHHHHHHHHHhc---CCCCC-CchHHHHHHHHHHHcC--CccEEEEEECCcCCC---ccchhhhhhhh-c
Q 038430 2 WVCVSDTFEEISVANAIIEGLG---ESTSS-LSEFQSLMSHIHRSIE--GKKNFLILNDVWDGD---YNKWAPFFLCL-N 71 (677)
Q Consensus 2 WV~vs~~~~~~~i~~~i~~~l~---~~~~~-~~~~~~~~~~i~~~L~--~kr~LlVlDdvw~~~---~~~~~~l~~~~-~ 71 (677)
||+.....+...++..|++++. ...+. ..+.++....+.+.+. +++++||||+++... +.....+.... .
T Consensus 79 ~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~ 158 (365)
T TIGR02928 79 YVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSN 158 (365)
T ss_pred EEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccc
Confidence 5666666778899999999994 22211 1234455555666653 567899999997752 11111222111 1
Q ss_pred CCC--CCcEEEEEcCchHHHHhcC-------CCCeEecCCCChHHHHHHHHHHhhcC-CCCCCCcchhHHHHHHHHHhcC
Q 038430 72 HGL--HGSKILVTTRNELVARMMG-------STNIIFIEQLTEEECWSLFKRLAFFG-CSFEDCERLEPIGQKIARKCKG 141 (677)
Q Consensus 72 ~~~--~gS~IiiTTR~~~v~~~~~-------~~~~~~v~~L~~~ea~~LF~~~af~~-~~~~~~~~~~~~~~~i~~~c~G 141 (677)
... ..-.+|.+|........+. ....+.+++.+.++-.+++...+-.. ......++..+...+++..+.|
T Consensus 159 ~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 238 (365)
T TIGR02928 159 GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHG 238 (365)
T ss_pred cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcC
Confidence 111 2223455554443322211 12468899999999999998876311 1111223333445556667778
Q ss_pred Cch-HHHHHHHHh----c-c--CCCHHHHHHHHhhhhhhhhhcCCCccceeecccccCCCchhhhHHHhhhccCC--CCc
Q 038430 142 LPI-AAKVIGNLL----R-S--KSTIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFP--KDY 211 (677)
Q Consensus 142 lPL-al~~ig~~L----~-~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp--~~~ 211 (677)
.|- |+..+-.+. . + .-+.+..+.+.+.... ....-+...|+. +.+..+..++... .+.
T Consensus 239 d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~----------~~~~~~i~~l~~--~~~~~l~ai~~~~~~~~~ 306 (365)
T TIGR02928 239 DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEK----------DRLLELIRGLPT--HSKLVLLAIANLAANDED 306 (365)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----------HHHHHHHHcCCH--HHHHHHHHHHHHHhcCCC
Confidence 874 333322211 1 1 1244455554443110 011124456666 4554443332111 233
Q ss_pred eecHHHHHHHHH--HcCC-cCcchhhhHHHhHHHHHHHHHHccCccccc
Q 038430 212 NMYKEELISLWM--AQGY-LNAEEYEEKEMTGEECFNILAARSFFQEFE 257 (677)
Q Consensus 212 ~i~~~~li~~wi--~~g~-i~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 257 (677)
.+...++...+. ++.+ +.+. .......+++.|...+++....
T Consensus 307 ~~~~~~~~~~y~~~~~~~~~~~~----~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 307 PFRTGEVYEVYKEVCEDIGVDPL----TQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred CccHHHHHHHHHHHHHhcCCCCC----cHHHHHHHHHHHHhcCCeEEEE
Confidence 355555555332 1111 1111 2345667788899999987654
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.12 Score=27.40 Aligned_cols=17 Identities=47% Similarity=0.716 Sum_probs=8.9
Q ss_pred CCcCEEEecCCCCccccC
Q 038430 377 YNLQKLDIRGCRNLRELP 394 (677)
Q Consensus 377 ~~L~~L~L~~~~~l~~lp 394 (677)
++|+.|++++|+ +..+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 357777777777 66555
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.017 Score=53.26 Aligned_cols=62 Identities=26% Similarity=0.456 Sum_probs=39.3
Q ss_pred hccCCCeEEEeCCCCCCc--CCCCCCc-c-cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeec
Q 038430 576 SLTNLSDLKLVFCENCEQ--LPPLGKL-P-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIK 651 (677)
Q Consensus 576 ~l~~L~~L~l~~c~~~~~--l~~l~~l-~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 651 (677)
+++.++.|.+.+|..+.+ +..++++ | |+.|+|++|+.|+.-+.... ..|++|+.|.+.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L------------------~~lknLr~L~l~ 184 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL------------------LKLKNLRRLHLY 184 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH------------------HHhhhhHHHHhc
Confidence 556666666666655532 2234443 4 77788877777776654433 567788888887
Q ss_pred cccc
Q 038430 652 ELEE 655 (677)
Q Consensus 652 ~~~~ 655 (677)
+++.
T Consensus 185 ~l~~ 188 (221)
T KOG3864|consen 185 DLPY 188 (221)
T ss_pred Cchh
Confidence 7776
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=91.61 E-value=2.7 Score=39.46 Aligned_cols=90 Identities=13% Similarity=0.150 Sum_probs=63.5
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+.+-++|+||+...+......+...+......+.+|++|++. .+..... ....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~---g--i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ---G--I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc---C--C
Confidence 456689999997766566777888887766666777777654 3322221 2458999999999988877765 1 1
Q ss_pred CCCcchhHHHHHHHHHhcCCch
Q 038430 123 EDCERLEPIGQKIARKCKGLPI 144 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPL 144 (677)
-.+.+..++..++|.|.
T Consensus 170 -----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 -----SEEAAELLLALAGGSPG 186 (188)
T ss_pred -----CHHHHHHHHHHcCCCcc
Confidence 13457889999999875
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.56 E-value=1.6 Score=42.50 Aligned_cols=93 Identities=11% Similarity=0.080 Sum_probs=60.0
Q ss_pred EEEEECCcCCC--ccchhhhhhhhcCCCCCcEEEEEcC---------chHHHHhcCCCCeEecCCCChHHHHHHHHHHhh
Q 038430 49 FLILNDVWDGD--YNKWAPFFLCLNHGLHGSKILVTTR---------NELVARMMGSTNIIFIEQLTEEECWSLFKRLAF 117 (677)
Q Consensus 49 LlVlDdvw~~~--~~~~~~l~~~~~~~~~gS~IiiTTR---------~~~v~~~~~~~~~~~v~~L~~~ea~~LF~~~af 117 (677)
+|++|||.... +..+..+...... .|..||+|++ ..++..++....++++++++.++-.+++.+.+-
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 78889995432 2222223222222 3667999997 355666666778999999999999999998773
Q ss_pred cCCCCCCCcchhHHHHHHHHHhcCCchHHH
Q 038430 118 FGCSFEDCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 118 ~~~~~~~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
.. ... --+++..-+++++.|-.-++.
T Consensus 168 ~~-~~~---l~~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 168 DR-QLY---VDPHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred Hc-CCC---CCHHHHHHHHHHhhhhHHHHH
Confidence 32 111 224556667777777666555
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.64 Score=40.63 Aligned_cols=96 Identities=15% Similarity=0.177 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHhc--CCC--CCCchHHH-------HHHHHHHHcCCccEEEEEECCcCCCccchhhhhhhhcCCCCCcE
Q 038430 10 EEISVANAIIEGLG--EST--SSLSEFQS-------LMSHIHRSIEGKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSK 78 (677)
Q Consensus 10 ~~~~i~~~i~~~l~--~~~--~~~~~~~~-------~~~~i~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~ 78 (677)
.=..+++++++.+. ... ...++... ..+.+.+....++.+|++|+|... ..|......+-+..+..+
T Consensus 14 GKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ 91 (128)
T PF13173_consen 14 GKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL--PDWEDALKFLVDNGPNIK 91 (128)
T ss_pred CHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh--ccHHHHHHHHHHhccCce
Confidence 34557777777765 111 11111111 234455555557889999999776 567777776666555678
Q ss_pred EEEEcCchHHHHhc------CCCCeEecCCCChHH
Q 038430 79 ILVTTRNELVARMM------GSTNIIFIEQLTEEE 107 (677)
Q Consensus 79 IiiTTR~~~v~~~~------~~~~~~~v~~L~~~e 107 (677)
|++|+........- |-...++|.||+..|
T Consensus 92 ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 92 IILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred EEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 99999988777441 112368899998876
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.97 Score=47.36 Aligned_cols=97 Identities=11% Similarity=0.035 Sum_probs=68.0
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+||+...+......+...+..-..+..+|++|.+. .+..... -...+.+.+++.++..+++..... .
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~---~- 215 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP---D- 215 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc---c-
Confidence 456689999998887777788888887765566677777655 4433332 255899999999999999887531 1
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKVI 149 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~i 149 (677)
..- .....++..++|.|.....+
T Consensus 216 ---~~~-~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 216 ---LPD-DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred ---CCH-HHHHHHHHHcCCCHHHHHHH
Confidence 011 11267899999999866544
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=91.06 E-value=1.5 Score=47.14 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=63.8
Q ss_pred CCccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEE--cCchH--HHHhc-CCCCeEecCCCChHHHHHHHHHHhhc
Q 038430 44 EGKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVT--TRNEL--VARMM-GSTNIIFIEQLTEEECWSLFKRLAFF 118 (677)
Q Consensus 44 ~~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiT--TR~~~--v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~ 118 (677)
.+++.+|++|+++..+....+.+...+.. |..++|. |.+.. +.... .-...+++++++.++..+++.+.+-.
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence 35788999999987755555556555543 5555553 43322 11111 11358999999999999999885532
Q ss_pred CCCCCCCcchhHHHHHHHHHhcCCchHHHHHH
Q 038430 119 GCSFEDCERLEPIGQKIARKCKGLPIAAKVIG 150 (677)
Q Consensus 119 ~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig 150 (677)
..... ..--.+....+++.|+|-+..+..+-
T Consensus 167 ~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 167 KERGL-VELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred hhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 11100 01224556788999999987765443
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.0056 Score=57.50 Aligned_cols=86 Identities=20% Similarity=0.159 Sum_probs=59.8
Q ss_pred cccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccc
Q 038430 321 SIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKL 400 (677)
Q Consensus 321 ~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l 400 (677)
.+......+.|+++. +....+...+..+..|..|+++.+.+..+|..++.+..+..+++..|. ....|.+.+++
T Consensus 37 ei~~~kr~tvld~~s-----~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~ 110 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSS-----NRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKE 110 (326)
T ss_pred hhhccceeeeehhhh-----hHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcccccc
Confidence 445566677777764 334444455666667777777777777777777777777777777665 77777777777
Q ss_pred cccceeecCccC
Q 038430 401 KNMRSLLNGLTC 412 (677)
Q Consensus 401 ~~L~~L~l~~~~ 412 (677)
+.+++++..++.
T Consensus 111 ~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 111 PHPKKNEQKKTE 122 (326)
T ss_pred CCcchhhhccCc
Confidence 777777777764
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=89.22 E-value=6.4 Score=38.49 Aligned_cols=96 Identities=11% Similarity=-0.020 Sum_probs=58.5
Q ss_pred cEEEEEECCcCCC-ccchhh-hhhhhcC-CCCCcEEEEEcCc---------hHHHHhcCCCCeEecCCCChHHHHHHHHH
Q 038430 47 KNFLILNDVWDGD-YNKWAP-FFLCLNH-GLHGSKILVTTRN---------ELVARMMGSTNIIFIEQLTEEECWSLFKR 114 (677)
Q Consensus 47 r~LlVlDdvw~~~-~~~~~~-l~~~~~~-~~~gS~IiiTTR~---------~~v~~~~~~~~~~~v~~L~~~ea~~LF~~ 114 (677)
--+||+||+.... ...|.. +...+.. ..+|..||+||+. .++..++.....+++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3589999996432 123432 2222222 1246679999973 34444444566899999999999999998
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHhcCCchHH
Q 038430 115 LAFFGCSFEDCERLEPIGQKIARKCKGLPIAA 146 (677)
Q Consensus 115 ~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal 146 (677)
+|....- .--.+...-+++++.|-.-++
T Consensus 174 ~a~~~~l----~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGL----ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCC----CCCHHHHHHHHHhCCCCHHHH
Confidence 7754221 122345566777776554433
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=88.91 E-value=3.7 Score=44.99 Aligned_cols=98 Identities=16% Similarity=0.120 Sum_probs=67.6
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEE-EcCchHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILV-TTRNELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~Iii-TTR~~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|+++..+...+..+...+.......++|+ ||+...+..... ....+++++++.++..+.+...+-....
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi- 205 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL- 205 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC-
Confidence 5667899999998766778888888877655666554 555555554432 2457999999999999999887743221
Q ss_pred CCCcchhHHHHHHHHHhcCCchHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAA 146 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal 146 (677)
. --.+....|+..++|-+-.+
T Consensus 206 ~---ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 206 K---TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred C---CCHHHHHHHHHHcCCCHHHH
Confidence 1 12344566888888866443
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.01 E-value=0.026 Score=53.14 Aligned_cols=91 Identities=16% Similarity=0.227 Sum_probs=76.7
Q ss_pred ccCC-cccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCC
Q 038430 344 DKIP-ENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGIS 422 (677)
Q Consensus 344 ~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~ 422 (677)
..+| ..+........||++.+++..+-..++.++.|..|+++.+. +..+|..++.+..++++++..| .....|.+.+
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~ 108 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKN-NHSQQPKSQK 108 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhcc-chhhCCcccc
Confidence 3444 34667788999999999988777788889999999999888 8999999999999999999888 5778899999
Q ss_pred CCCCCCccCceeeC
Q 038430 423 KLTSLRTLDKFAVG 436 (677)
Q Consensus 423 ~l~~L~~L~l~~~~ 436 (677)
++..+++++.-.+.
T Consensus 109 k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTE 122 (326)
T ss_pred ccCCcchhhhccCc
Confidence 99999988866543
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=87.84 E-value=1.7 Score=37.65 Aligned_cols=82 Identities=13% Similarity=0.269 Sum_probs=39.1
Q ss_pred cccCCCcccEEEeCCCCCCCCCCccCCcc-cCCCCCcCEEEecCccccccch-hhccCCCcCEEEecCCCCccccCc-cc
Q 038430 321 SIHGLNRLRTLLIDDESPPNSSLDKIPEN-VGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELPT-GI 397 (677)
Q Consensus 321 ~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~i 397 (677)
.|.++++|+.+.+.. .+..++.. |..+.+|+.+.+..+ +..++. .+.++.+|+.+.+.+ . +..++. .+
T Consensus 7 ~F~~~~~l~~i~~~~------~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F 77 (129)
T PF13306_consen 7 AFYNCSNLESITFPN------TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAF 77 (129)
T ss_dssp TTTT-TT--EEEETS------T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTT
T ss_pred HHhCCCCCCEEEECC------CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-c-ccccccccc
Confidence 556666777777642 23444433 556667777777664 555443 356666677777754 2 444443 34
Q ss_pred ccccccceeecCcc
Q 038430 398 GKLKNMRSLLNGLT 411 (677)
Q Consensus 398 ~~l~~L~~L~l~~~ 411 (677)
..+++|+.+.+..+
T Consensus 78 ~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN 91 (129)
T ss_dssp TT-TTECEEEETTT
T ss_pred cccccccccccCcc
Confidence 45677777776543
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=87.79 E-value=4.5 Score=42.21 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=67.1
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcE-EEEEcCchHHHHhcCC-CCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSK-ILVTTRNELVARMMGS-TNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~-IiiTTR~~~v~~~~~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|++...+......+...+..-..+.. |++|++-..+....-. ...+++++++.++..+++...+... .
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~-~- 217 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ-G- 217 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc-C-
Confidence 4666899999988876777778888876544444 4555554444443322 4589999999999999988743211 1
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKVI 149 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~i 149 (677)
--.+....++..++|.|.....+
T Consensus 218 ----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 218 ----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred ----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 11344678899999999866543
|
|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=87.72 E-value=2.8 Score=43.12 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=66.7
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchHHH-HhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNELVA-RMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~v~-~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++=++|+|++...+...+..+...+..-..++.+|++|.+.+.. .... -...+++.+++.++......... .+
T Consensus 92 ~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~-~~--- 167 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKY-ND--- 167 (313)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHh-cC---
Confidence 455577888887766678999999999888899999888765422 2221 14589999999999877665532 11
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
.-.+.+..++.+++|.|..+.
T Consensus 168 ----~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 168 ----IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ----CCHHHHHHHHHHcCCCHHHHH
Confidence 112336678899999886554
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=86.70 E-value=0.56 Score=27.86 Aligned_cols=19 Identities=32% Similarity=0.474 Sum_probs=11.2
Q ss_pred CCcCEEEecCccccccchh
Q 038430 354 MHLKYLNLSELHIERLPKT 372 (677)
Q Consensus 354 ~~L~~L~Ls~~~i~~lp~~ 372 (677)
.+|++|+|++|.|+.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666666554
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=86.70 E-value=0.56 Score=27.86 Aligned_cols=19 Identities=32% Similarity=0.474 Sum_probs=11.2
Q ss_pred CCcCEEEecCccccccchh
Q 038430 354 MHLKYLNLSELHIERLPKT 372 (677)
Q Consensus 354 ~~L~~L~Ls~~~i~~lp~~ 372 (677)
.+|++|+|++|.|+.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666666554
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.63 E-value=0.15 Score=47.25 Aligned_cols=91 Identities=16% Similarity=0.280 Sum_probs=54.9
Q ss_pred CCcCEEEecCcccccc-chhhccCCCcCEEEecCCCCccccC-cccc-cccccceeecCccCCCcccCCcCCCCCCCCcc
Q 038430 354 MHLKYLNLSELHIERL-PKTLCELYNLQKLDIRGCRNLRELP-TGIG-KLKNMRSLLNGLTCSLKYMPIGISKLTSLRTL 430 (677)
Q Consensus 354 ~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp-~~i~-~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 430 (677)
..++.+|.+++.|... -..+.+++.++.|.+.+|..+...- ..++ -.++|+.|++++|..++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT--------------- 165 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT--------------- 165 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec---------------
Confidence 4577888888887632 2446777788888888877543210 0122 23567777777775443
Q ss_pred CceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhH
Q 038430 431 DKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDE 472 (677)
Q Consensus 431 ~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~ 472 (677)
...+..|..+++|+.|.+.++..+.+...
T Consensus 166 -------------~~GL~~L~~lknLr~L~l~~l~~v~~~e~ 194 (221)
T KOG3864|consen 166 -------------DGGLACLLKLKNLRRLHLYDLPYVANLEL 194 (221)
T ss_pred -------------hhHHHHHHHhhhhHHHHhcCchhhhchHH
Confidence 33555566666666666666655555443
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=86.02 E-value=11 Score=43.75 Aligned_cols=150 Identities=8% Similarity=0.045 Sum_probs=80.0
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHcC---CccEEEEEECCcCCCccchhhhhhhhcCC-CCCc
Q 038430 3 VCVSDTFEEISVANAIIEGLGESTSS-LSEFQSLMSHIHRSIE---GKKNFLILNDVWDGDYNKWAPFFLCLNHG-LHGS 77 (677)
Q Consensus 3 V~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~~i~~~L~---~kr~LlVlDdvw~~~~~~~~~l~~~~~~~-~~gS 77 (677)
|....-.+...++..|.++|.+..+. .....+....+...+. ....+||||+|+......-+.+...+.+. ..++
T Consensus 822 INCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~S 901 (1164)
T PTZ00112 822 INGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINS 901 (1164)
T ss_pred EeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCC
Confidence 44455567888999999999554332 2233444455555542 23458999999754211112233222221 2456
Q ss_pred EEEE--EcCc--------hHHHHhcCCCCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHH
Q 038430 78 KILV--TTRN--------ELVARMMGSTNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 78 ~Iii--TTR~--------~~v~~~~~~~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
+|+| +|.+ ..+..+++. ..+..++++.++-.+++...+-.....-....++.+|+.++..-|-.-.||.
T Consensus 902 KLiLIGISNdlDLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALD 980 (1164)
T PTZ00112 902 KLVLIAISNTMDLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQ 980 (1164)
T ss_pred eEEEEEecCchhcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHH
Confidence 6555 3322 122222322 2356699999999999998874322222223444455545544444556665
Q ss_pred HHHHHh
Q 038430 148 VIGNLL 153 (677)
Q Consensus 148 ~ig~~L 153 (677)
++-.+.
T Consensus 981 ILRrAg 986 (1164)
T PTZ00112 981 ICRKAF 986 (1164)
T ss_pred HHHHHH
Confidence 554444
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=85.96 E-value=2.7 Score=36.41 Aligned_cols=111 Identities=12% Similarity=0.226 Sum_probs=57.1
Q ss_pred ceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCcc-cCCCCCcCEEEecCccccccch-hhccCCCcC
Q 038430 304 KVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPEN-VGKLMHLKYLNLSELHIERLPK-TLCELYNLQ 380 (677)
Q Consensus 304 ~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~ 380 (677)
+++.+.+.. .+..++ ..|..+.+|+.+.+.+ .+..++.. +..+..|+.+.+.. .+..++. .+..+++|+
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~------~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPN------NLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESS------TTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred CCCEEEECC-CeeEeChhhcccccccccccccc------cccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 577777663 455555 5788888999999974 25555543 67787899999976 5555544 477799999
Q ss_pred EEEecCCCCccccCc-ccccccccceeecCccCCCcccCC-cCCCCCCC
Q 038430 381 KLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMPI-GISKLTSL 427 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L 427 (677)
.+++..+ +..++. .+.++ +|+.+.+..+ +..++. .+.++.+|
T Consensus 85 ~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN--ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT---BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred ccccCcc--ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 9999753 555554 46666 8888877653 233332 24444443
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=84.95 E-value=4.6 Score=41.68 Aligned_cols=96 Identities=10% Similarity=0.068 Sum_probs=65.9
Q ss_pred ccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhcCC-CCeEecCCCChHHHHHHHHHHhhcCCCCC
Q 038430 46 KKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMMGS-TNIIFIEQLTEEECWSLFKRLAFFGCSFE 123 (677)
Q Consensus 46 kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~~ 123 (677)
++-.+|+|++...+......+...+..-..+..+|+||.+. .+....-+ .+.+.+.+++.+++.+.+.... ..
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~---- 180 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE---- 180 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc----
Confidence 34445679999887778888888887765677777777665 44444322 4579999999999988887642 11
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHH
Q 038430 124 DCERLEPIGQKIARKCKGLPIAAKVI 149 (677)
Q Consensus 124 ~~~~~~~~~~~i~~~c~GlPLal~~i 149 (677)
...+-+..++..++|-|.....+
T Consensus 181 ---~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 ---SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---CChHHHHHHHHHcCCCHHHHHHH
Confidence 11223556788999999755443
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=84.08 E-value=12 Score=41.76 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=45.4
Q ss_pred EEEEECCcCCCc-cchhh-hhhhhcCC-CCCcEEEEEcCch---------HHHHhcCCCCeEecCCCChHHHHHHHHHHh
Q 038430 49 FLILNDVWDGDY-NKWAP-FFLCLNHG-LHGSKILVTTRNE---------LVARMMGSTNIIFIEQLTEEECWSLFKRLA 116 (677)
Q Consensus 49 LlVlDdvw~~~~-~~~~~-l~~~~~~~-~~gS~IiiTTR~~---------~v~~~~~~~~~~~v~~L~~~ea~~LF~~~a 116 (677)
+|||||+..... ..|+. +...+... ..|..|||||+.. .+..++...-+++|+..+.+.-.+++.+++
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 788999976432 22222 22322221 2355688888752 344445556789999999999999999887
Q ss_pred hc
Q 038430 117 FF 118 (677)
Q Consensus 117 f~ 118 (677)
-.
T Consensus 460 ~~ 461 (617)
T PRK14086 460 VQ 461 (617)
T ss_pred Hh
Confidence 43
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=84.06 E-value=11 Score=40.82 Aligned_cols=102 Identities=17% Similarity=0.081 Sum_probs=63.8
Q ss_pred cEEEEEECCcCCCc-cch-hhhhhhhcCC-CCCcEEEEEcCc---------hHHHHhcCCCCeEecCCCChHHHHHHHHH
Q 038430 47 KNFLILNDVWDGDY-NKW-APFFLCLNHG-LHGSKILVTTRN---------ELVARMMGSTNIIFIEQLTEEECWSLFKR 114 (677)
Q Consensus 47 r~LlVlDdvw~~~~-~~~-~~l~~~~~~~-~~gS~IiiTTR~---------~~v~~~~~~~~~~~v~~L~~~ea~~LF~~ 114 (677)
.-+||+||+..... ..+ +.+...+... ..|..||+|+.. +++..++...-++.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 34788999965421 122 2233333221 345578888653 34444555566899999999999999999
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHH
Q 038430 115 LAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIG 150 (677)
Q Consensus 115 ~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig 150 (677)
++-...- . ..--+++..-|+..+.|.|-.+..+-
T Consensus 287 ~~~~~gl-~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 287 EIKNQNI-K-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHhcCC-C-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 8732211 0 02234667788999999988776444
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=83.35 E-value=6.7 Score=41.60 Aligned_cols=96 Identities=10% Similarity=0.059 Sum_probs=65.0
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|++...+......+...+.....+..+|++|.+. .+...+- -...+.+++++.++..+.+.... .
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~----~- 190 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD----G- 190 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc----C-
Confidence 344578889998876666677877777666667666666654 4443332 24689999999999988876432 1
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKVI 149 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~i 149 (677)
.-.+.+..++..++|-|.....+
T Consensus 191 ----~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 191 ----VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred ----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 11244677899999998654433
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=83.26 E-value=5.4 Score=45.38 Aligned_cols=100 Identities=11% Similarity=0.039 Sum_probs=68.0
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchHHH-HhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNELVA-RMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~v~-~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
++.-++|||+|...+...+..+...+..-....++|+||++.+-. ..+- -...|.++.++.++..+.+.+.+-.. ..
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~E-gI 196 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEE-RI 196 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHc-CC
Confidence 344578899998877677888888887766677888877765432 2221 14589999999999998888765322 21
Q ss_pred CCCcchhHHHHHHHHHhcCCc-hHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLP-IAAKV 148 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlP-Lal~~ 148 (677)
. --.+....|++.++|-. -||..
T Consensus 197 ~---id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 197 A---FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 22345677888998854 45544
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=82.65 E-value=8.8 Score=43.45 Aligned_cols=114 Identities=18% Similarity=0.086 Sum_probs=74.3
Q ss_pred HHHHHHHHcCCccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEE--EcCchHHHH-hc-CCCCeEecCCCChHHHHH
Q 038430 35 LMSHIHRSIEGKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILV--TTRNELVAR-MM-GSTNIIFIEQLTEEECWS 110 (677)
Q Consensus 35 ~~~~i~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~Iii--TTR~~~v~~-~~-~~~~~~~v~~L~~~ea~~ 110 (677)
.+..+.+.+++++++++-|+.|..+...|..+...+....+...|+| ||++..... .. .-...+.+.+++.+|-++
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 46788888889999999888877666678888777776666666666 666443211 11 112367889999999999
Q ss_pred HHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHH
Q 038430 111 LFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNL 152 (677)
Q Consensus 111 LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~ 152 (677)
++.+.+-... ... -.++...|++++..-+-|+..++.+
T Consensus 361 Il~~~a~~~~-v~l---s~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 361 IVLNAAEKIN-VHL---AAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHHcC-CCC---CHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 9998663211 111 1344555666665556666666544
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=82.10 E-value=1 Score=26.67 Aligned_cols=20 Identities=45% Similarity=0.752 Sum_probs=12.9
Q ss_pred CCCcCEEEecCCCCccccCcc
Q 038430 376 LYNLQKLDIRGCRNLRELPTG 396 (677)
Q Consensus 376 l~~L~~L~L~~~~~l~~lp~~ 396 (677)
+++|++|+|++|. +..+|..
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHH
Confidence 3566777777766 6666653
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=82.10 E-value=1 Score=26.67 Aligned_cols=20 Identities=45% Similarity=0.752 Sum_probs=12.9
Q ss_pred CCCcCEEEecCCCCccccCcc
Q 038430 376 LYNLQKLDIRGCRNLRELPTG 396 (677)
Q Consensus 376 l~~L~~L~L~~~~~l~~lp~~ 396 (677)
+++|++|+|++|. +..+|..
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHH
Confidence 3566777777766 6666653
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=82.03 E-value=7.8 Score=37.28 Aligned_cols=89 Identities=13% Similarity=0.033 Sum_probs=52.1
Q ss_pred EEEEEECCcCCCccchhhhhhhhcCC-CCCcEEEEEcCch-------HHHHhcCCCCeEecCCCChHHHHHHHHHHhhcC
Q 038430 48 NFLILNDVWDGDYNKWAPFFLCLNHG-LHGSKILVTTRNE-------LVARMMGSTNIIFIEQLTEEECWSLFKRLAFFG 119 (677)
Q Consensus 48 ~LlVlDdvw~~~~~~~~~l~~~~~~~-~~gS~IiiTTR~~-------~v~~~~~~~~~~~v~~L~~~ea~~LF~~~af~~ 119 (677)
-++++|||....+ ..+...+... ..|..||+|++.. ++..++...-+++++++++++-.++..+.+-..
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 4788899953211 1222222211 3467899999843 344455556689999999999888887765321
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCc
Q 038430 120 CSFEDCERLEPIGQKIARKCKGLP 143 (677)
Q Consensus 120 ~~~~~~~~~~~~~~~i~~~c~GlP 143 (677)
... --+++..-+++++.|--
T Consensus 164 -~l~---l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 164 -SVT---ISRQIIDFLLVNLPREY 183 (214)
T ss_pred -CCC---CCHHHHHHHHHHccCCH
Confidence 111 12344555666665543
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=81.99 E-value=15 Score=40.46 Aligned_cols=98 Identities=21% Similarity=0.165 Sum_probs=66.4
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcC-chHHHHhcCC-CCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTR-NELVARMMGS-TNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR-~~~v~~~~~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|+++..+...+..+...+........+|++|. ...+...+.. ...|++.+++.++..+.+.+.+-....
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi- 193 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR- 193 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 4566899999987765677788888876555555555554 3343333222 458999999999999999887643322
Q ss_pred CCCcchhHHHHHHHHHhcCCchHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAA 146 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal 146 (677)
..-.+....|++.++|.+--+
T Consensus 194 ---~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 194 ---EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHH
Confidence 112345677899999987544
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=81.80 E-value=9.2 Score=37.41 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=58.1
Q ss_pred EEEEEECCcCCC-ccchhhh-hhhhcCC-CCC-cEEEEEcCch---------HHHHhcCCCCeEecCCCChHHHHHHHHH
Q 038430 48 NFLILNDVWDGD-YNKWAPF-FLCLNHG-LHG-SKILVTTRNE---------LVARMMGSTNIIFIEQLTEEECWSLFKR 114 (677)
Q Consensus 48 ~LlVlDdvw~~~-~~~~~~l-~~~~~~~-~~g-S~IiiTTR~~---------~v~~~~~~~~~~~v~~L~~~ea~~LF~~ 114 (677)
-+|++|||.... ..+|+.. ...+... ..| .++|+||+.. ++..++....+++++++++++-.+++.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 378899996532 1344432 2222211 123 3699999744 5555666677999999999999999888
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHhcCCchHHH
Q 038430 115 LAFFGCSFEDCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 115 ~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
+|-... . .--+++..-+++++.|-.-++.
T Consensus 179 ~a~~~~-~---~l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 179 RARLRG-F---ELPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred HHHHcC-C---CCCHHHHHHHHHhhcCCHHHHH
Confidence 664321 1 1223456667777766544443
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=81.64 E-value=8.4 Score=43.14 Aligned_cols=101 Identities=14% Similarity=0.076 Sum_probs=67.6
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcE-EEEEcCchHHHHhcCC-CCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSK-ILVTTRNELVARMMGS-TNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~-IiiTTR~~~v~~~~~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
++.-++|+|+|...+...+..+...+..-....+ |++||....+...+-+ ...|.++.++.++..+.+.+.+-.. ..
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~E-gi 201 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEE-GI 201 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHc-CC
Confidence 4556899999988877778888888876544555 5555555555544322 4589999999999988888765321 11
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKVI 149 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~i 149 (677)
. .-.+....|++.++|.|.....+
T Consensus 202 ~---~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 202 A---HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 12234577899999988654433
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=81.41 E-value=25 Score=34.07 Aligned_cols=102 Identities=14% Similarity=0.125 Sum_probs=59.5
Q ss_pred EEEEEECCcCCCccchhhhhhhhcCC-CCCc-EEEEEcCchHH--------HHhcCCCCeEecCCCChHHHHHHHHHHhh
Q 038430 48 NFLILNDVWDGDYNKWAPFFLCLNHG-LHGS-KILVTTRNELV--------ARMMGSTNIIFIEQLTEEECWSLFKRLAF 117 (677)
Q Consensus 48 ~LlVlDdvw~~~~~~~~~l~~~~~~~-~~gS-~IiiTTR~~~v--------~~~~~~~~~~~v~~L~~~ea~~LF~~~af 117 (677)
-+||+|||...+...-..+...+... ..|. .||+|++.... ...+.....++++++++++-..++.+.+-
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 47889999654323333344444322 2344 46777664322 22333345899999999876666665432
Q ss_pred cCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHHh
Q 038430 118 FGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLL 153 (677)
Q Consensus 118 ~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L 153 (677)
.. ... --.+....+++.+.|.+..+..+-..|
T Consensus 172 ~~-~v~---l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 172 ER-GLQ---LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred Hc-CCC---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 21 111 223456777888999998887665544
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=81.06 E-value=13 Score=41.59 Aligned_cols=105 Identities=11% Similarity=0.122 Sum_probs=69.8
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCc-hHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRN-ELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~-~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-+||+|++...+......+...+..-.....+|++|.+ ..+...+. -...+++++++.++..+.+...+.....
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi- 196 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV- 196 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-
Confidence 56678999999877656677788887654445556665554 44443321 2357899999999998888876643222
Q ss_pred CCCcchhHHHHHHHHHhcCC-chHHHHHHHHh
Q 038430 123 EDCERLEPIGQKIARKCKGL-PIAAKVIGNLL 153 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~Gl-PLal~~ig~~L 153 (677)
.--.+....|++.++|- -.|+..+...+
T Consensus 197 ---~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 197 ---DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 12234577788888885 46777766544
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=80.84 E-value=13 Score=39.07 Aligned_cols=98 Identities=12% Similarity=0.148 Sum_probs=65.7
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|++...+...+..+...+.......++|++|.+. .+.... .-...+++++++.++..+.+...+-....
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~- 196 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI- 196 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 345589999998776556777888877766667777776544 343332 12458999999999988887776533221
Q ss_pred CCCcchhHHHHHHHHHhcCCchHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAA 146 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal 146 (677)
.--.+....++..++|-|-.+
T Consensus 197 ---~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 197 ---DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHH
Confidence 112345677888999977543
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=80.60 E-value=27 Score=36.00 Aligned_cols=97 Identities=8% Similarity=0.038 Sum_probs=61.2
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
++.-++|+|+++..+......+...+......+++|+++... .+..... -...++++++++++..+.+.+.+-....
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi- 176 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKV- 176 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCC-
Confidence 345689999998776555566666665545567777777542 2211111 1247999999999998888876633222
Q ss_pred CCCcchhHHHHHHHHHhcCCchH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIA 145 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLa 145 (677)
.. -.+....+++.++|-.-.
T Consensus 177 ~i---~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 177 PY---VPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred CC---CHHHHHHHHHHcCCCHHH
Confidence 11 234567788888876533
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=80.30 E-value=11 Score=38.92 Aligned_cols=98 Identities=11% Similarity=0.029 Sum_probs=61.3
Q ss_pred ccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCCC
Q 038430 46 KKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSFE 123 (677)
Q Consensus 46 kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~~ 123 (677)
.+-+||+||+..........+...+.......++|+||... .+.... .....+++++++.++..+.+...+-.... .
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~ 203 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-D 203 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-C
Confidence 34589999997654344555666665554556788877543 222222 12347889999999988888876533222 1
Q ss_pred CCcchhHHHHHHHHHhcCCchHHH
Q 038430 124 DCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 124 ~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
--.+....++++++|.+-.+.
T Consensus 204 ---~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 204 ---YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHH
Confidence 223457778888888765554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 677 | ||||
| 4fcg_A | 328 | Structure Of The Leucine-Rich Repeat Domain Of The | 2e-04 |
| >pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 | Back alignment and structure |
|---|
Score = 236 bits (604), Expect = 2e-69
Identities = 62/411 (15%), Positives = 125/411 (30%), Gaps = 57/411 (13%)
Query: 1 MWVCVSDTF--EEISVANAIIEGLGESTSSLSE----FQSLMSHIHRSIEGKKN--FLIL 52
WV V + + L + S + + + K LIL
Sbjct: 183 HWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLIL 242
Query: 53 NDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIF--IEQLTEEECWS 110
+DVWD L +IL+TTR++ V + + L +E+
Sbjct: 243 DDVWDSWV---------LKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLE 293
Query: 111 LFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSK-STIKDWQRILDSE 169
+ L I ++CKG P+ +IG LLR + + + + L ++
Sbjct: 294 ILSLFVN-----MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNK 348
Query: 170 MWKAEEIGK-----GLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMA 224
+K L + +S L + +K +++ ++ KD + + L LW
Sbjct: 349 QFKRIRKSSSYDYEALDEAMSISVEMLRED--IKDYYTDLSILQKDVKVPTKVLCILWDM 406
Query: 225 QGYLNAEEYEEKEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKE 284
+ E+ +S + + +HD+ DF K
Sbjct: 407 ETE-----------EVEDILQEFVNKSLLF---CDRNGKSFRYYLHDLQVDFLT---EKN 449
Query: 285 CLWLEINSTKESVINAFGGKVRHLGLKFKGGASFP-------MSIHGLNRLRTLLIDDES 337
C L+ K + L + + S L L+ +
Sbjct: 450 CSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHKELCALMFSLDW 509
Query: 338 PPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCR 388
+ P ++ ++Y ++ + + + E +L +
Sbjct: 510 IKAKTELVGPAHLIHEF-VEYRHILDEKDCAVSENFQEFLSLNGHLLGRQP 559
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 7e-63
Identities = 55/375 (14%), Positives = 110/375 (29%), Gaps = 46/375 (12%)
Query: 1 MWVCVSDTFEE--ISVANAIIEGLGESTSSLSEFQSLMSH--------IHRSIEGKKNFL 50
+W+ S T + + I+ L L+ + I+
Sbjct: 188 VWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLF 247
Query: 51 ILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIF-IEQLTEEECW 109
+ +DV + +WA + LVTTR+ ++ T + L +EC+
Sbjct: 248 VFDDVVQEETIRWAQEL--------RLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECY 299
Query: 110 SLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKST--IKDWQRILD 167
+ E+ E + K G P + K+ + L+
Sbjct: 300 DFLEAYGM---PMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLE 356
Query: 168 SEMWKAEE-----IGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLW 222
S E K L L LS + ++ V P ++ + +
Sbjct: 357 SRGLVGVECITPYSYKSLAMALQRCVEVLSDE--DRSALAFAVVMPPGVDIPVKLWSCVI 414
Query: 223 MAQGYLNAEEYEEKEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSS 282
+ E E+ + + L+ R +++ K+ I+H F + V
Sbjct: 415 PVDIC--SNEEEQLDDEVADRLKRLSKRGALL---SGKRMPVLTFKIDHIIHMFLKHVVD 469
Query: 283 KECLWLEINSTKESVINAFGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSS 342
+ + + I+ ++ +G + R + P +
Sbjct: 470 AQTI--------ANGISILEQRLLEIG-NNNVSVPERHIPSHFQKFRRSSASEMYPKTTE 520
Query: 343 LDKI-PENVGKLMHL 356
I PE+ K M L
Sbjct: 521 ETVIRPEDFPKFMQL 535
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 138 bits (347), Expect = 7e-34
Identities = 83/518 (16%), Positives = 151/518 (29%), Gaps = 155/518 (29%)
Query: 2 WVCVSDTFEEISVANAIIEGL--------GESTSSLSEFQSLMSHIHRSIEGKKNF---- 49
W+ + + ++E L TS ++ IH +
Sbjct: 186 WL----NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 50 ------LILNDVWDGDYNKWAPF-FLCLNHGLHGSKILVTTRNELVARMMGS--TNIIFI 100
L+L +V + W F C KIL+TTR + V + + T I +
Sbjct: 242 PYENCLLVLLNVQNA--KAWNAFNLSC--------KILLTTRFKQVTDFLSAATTTHISL 291
Query: 101 EQ----LTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRS- 155
+ LT +E SL L + C +D P P +I +R
Sbjct: 292 DHHSMTLTPDEVKSLL--LKYLDCRPQD----LP-----REVLTTNPRRLSIIAESIRDG 340
Query: 156 KSTIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYK 215
+T +W+ + K I + S N L ++ F +VFP ++
Sbjct: 341 LATWDNWKHV---NCDKLTTI-------IESSLNVLEPAEY-RKMFDRLSVFPPSAHIPT 389
Query: 216 EELISLWMAQGYLNAEEYEEKEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHD 275
L +W + + + EK + + + I +
Sbjct: 390 ILLSLIW------FDVIKSDVMVVVNKLHKYSLV-------EKQPKE--STISIPSIYLE 434
Query: 276 FAQFVSSKECLWLEINSTKESVINAFGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDD 335
+ ++ L S+++ + N +T DD
Sbjct: 435 LKVKLENEYAL-------HRSIVDHY------------------------NIPKTFDSDD 463
Query: 336 ESPPNSSLDK-IPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELP 394
PP LD+ ++G HLK + E + ++ LD R
Sbjct: 464 LIPPY--LDQYFYSHIGH--HLKNIEHPER-MTLFRM----VF----LDFRFLEQ----- 505
Query: 395 TGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQ 454
K+++ + N L + L L+ + D + + +F
Sbjct: 506 ----KIRHDSTAWNASGSIL-------NTLQQLKFYKPYICDN--DPKYERLVNAILDF- 551
Query: 455 LIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492
+ K E L + D LL + L E
Sbjct: 552 -LPKIE-ENLICSKYTD------------LLRIALMAE 575
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 3e-10
Identities = 72/512 (14%), Positives = 149/512 (29%), Gaps = 137/512 (26%)
Query: 124 DCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEEIGKGLLTP 183
DC+ ++ + + I ++ + I +++ SK + R+
Sbjct: 34 DCKDVQDMPKSI--------LSKEEIDHIIMSKDAVSGTLRLFW---------------- 69
Query: 184 LLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEKEMTGE-- 241
LLS MV++F V +Y ++ E + M
Sbjct: 70 TLLSKQ----EEMVQKFVE--EVLRINYK---------FLMSPI--KTEQRQPSMMTRMY 112
Query: 242 -ECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDF------AQFV-------SSKECLW 287
E + L + Q F K ++ + + + A+ V S K +
Sbjct: 113 IEQRDRLYNDN--QVFAK---YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 288 LEINSTKESVINAFGGKVR--HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDK 345
L++ + + V K+ +L M L +L + + + +
Sbjct: 168 LDVCLSYK-VQCKMDFKIFWLNLKNCNSPETVLEM----LQKLLYQIDPNWTSRSDHSSN 222
Query: 346 IPENVGKL-MHLKYLNLSELHIERLPKTLCELYN------LQKLDIRGCRNL---RE--- 392
I + + L+ L L + L L N ++ C+ L R
Sbjct: 223 IKLRIHSIQAELRRL----LKSKPYENCLLVLLNVQNAKAWNAFNL-SCKILLTTRFKQV 277
Query: 393 ---LPTGIGKLKNMRSLLNGLTCS------LKYMPIGISKL-TSLRTLDKFAVG--GGVD 440
L ++ LT LKY+ L + T + +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 441 GGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDED 500
+ K+ + I S ++ L+ AE ++ V
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAE---------YRKMFDRLSVF-PPSAH 386
Query: 501 ---------WEDEEENEDEGGEDEDEDGGY----KEEKGGKV-VDGEYEERRRKNEKDEQ 546
W D +++ ++ Y K+ K + + Y E + K E +
Sbjct: 387 IPTILLSLIWFDVIKSDVM--VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 547 L----LEALQPPLNVEKLWILFNGGNILPKWL 574
L ++ P F+ +++P +L
Sbjct: 445 LHRSIVDHYNIPKT-------FDSDDLIPPYL 469
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 1e-06
Identities = 71/515 (13%), Positives = 147/515 (28%), Gaps = 157/515 (30%)
Query: 72 HGLHGS-K-ILV--TTRNELVARMMGSTNIIFI---EQLTEEECWSLFKRLAFFGCSFED 124
G+ GS K + + V M I ++ + E + ++L
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEMLQKL--------- 205
Query: 125 CERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQR---ILD----SEMWKAEEIG 177
+++P + + + I LR K ++ +L ++ W A +
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 178 -KGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEK 236
K LLT D S + + + +E+ SL + + YL+ +
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHIS----LDHHSMTLTPDEVKSL-LLK-YLDCRPQDLP 319
Query: 237 EMTGEEC------FNILAAR-----SFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKEC 285
E +I+A + + ++ + D K+ I+ + E
Sbjct: 320 R---EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-----KLTTIIESSLNVLEPAE- 370
Query: 286 LWLEINSTKESVINAFGGKVRHLGLKFKGGASFPMSIH-GLNRLRTLLIDDESPPNSSLD 344
R + F + FP S H L + D
Sbjct: 371 -------------------YRKM---FDRLSVFPPSAHIPTILLSLIWFDVIK------- 401
Query: 345 KIPENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRG-CRNLRELPTGIGKLKN 402
V +H L +E+ PK + + ++ L+++ N L
Sbjct: 402 SDVMVVVNKLHKYSL------VEKQPKESTISIPSIY-LELKVKLENEYAL--------- 445
Query: 403 MRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIE 462
RS+++ + + LD++ + I
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPY----LDQYF------------------YSHI------ 477
Query: 463 GLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYK 522
HL E E + ++L D + +++ D
Sbjct: 478 ----GHHLKNIEHPERMTL--FRMVFL--------DFRFLEQKIRHD----------STA 513
Query: 523 EEKGGKVVD-----GEYEERRRKNE-KDEQLLEAL 551
G +++ Y+ N+ K E+L+ A+
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 4e-19
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 314 GGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTL 373
GL L++L ++ + + +P ++ L +LK L + + L +
Sbjct: 171 ASTDASGEHQGLVNLQSLRLE-----WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAI 225
Query: 374 CELYNLQKLDIRGCRNLRELPTGIGKLKNMRSL-LNGLTCSLKYMPIGISKLTSLRTLD 431
L L++LD+RGC LR P G ++ L L + +L +P+ I +LT L LD
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS-NLLTLPLDIHRLTQLEKLD 283
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 1e-17
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 13/123 (10%)
Query: 317 SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCEL 376
FP L+ L+ + ID + L ++P+ + + L+ L L+ + LP ++ L
Sbjct: 95 QFPDQAFRLSHLQHMTID-----AAGLMELPDTMQQFAGLETLTLARNPLRALPASIASL 149
Query: 377 YNLQKLDIRGCRNLRELPTGIGKLKNMRSL--LNGLT------CSLKYMPIGISKLTSLR 428
L++L IR C L ELP + L L ++ +P I+ L +L+
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLK 209
Query: 429 TLD 431
+L
Sbjct: 210 SLK 212
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 1e-17
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 10/118 (8%)
Query: 317 SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSEL-HIERLPKTLCE 375
S P SI L L++L I NS L + + L L+ L+L + P
Sbjct: 197 SLPASIANLQNLKSLKIR-----NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 376 LYNLQKLDIRGCRNLRELPTGIGKLKNMRSL-LNGLTCS-LKYMPIGISKLTSLRTLD 431
L++L ++ C NL LP I +L + L L G C L +P I++L + +
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG--CVNLSRLPSLIAQLPANCIIL 307
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 28/187 (14%), Positives = 57/187 (30%), Gaps = 31/187 (16%)
Query: 274 HDFAQFVSSKECLWLEINSTKESVINAFGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLI 333
H S +E L+ + ++ + + + + N +
Sbjct: 5 HHHHHHSSGRENLYFQGSTALRPYHDVLS-QWQRHYNADRNRWHSAWRQANSNNPQIETR 63
Query: 334 DDES----PP----------------NSSLDKIPENVGKLMHLKYLNLSELHIERLPKTL 373
+ + L + P+ +L HL+++ + + LP T+
Sbjct: 64 TGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM 123
Query: 374 CELYNLQKLDIRGCRNLRELPTGIGKLKNMRSL----LNGLTC-----SLKYMPIGISKL 424
+ L+ L + LR LP I L +R L LT + L
Sbjct: 124 QQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182
Query: 425 TSLRTLD 431
+L++L
Sbjct: 183 VNLQSLR 189
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 4e-11
Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 12/124 (9%)
Query: 319 PMSIHGLNRLRTLLIDD---ESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTL-- 373
+ + T+++ + S P +SL N L ++L + L
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749
Query: 374 CELYNLQKLDIRGCRNLRELPTGIGKLKNMRSL--LNGLTCS----LKYMPIGISKLTSL 427
L L +D+ PT +++ + L+ P GI+ SL
Sbjct: 750 TTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808
Query: 428 RTLD 431
L
Sbjct: 809 IQLQ 812
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 5e-10
Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 17/124 (13%)
Query: 317 SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCEL 376
+I L +L+ + NS V E + L
Sbjct: 439 FISKAIQRLTKLQIIYFA-----NSPFTYDNIAVDWEDANSDYAKQ---YENEELSWSNL 490
Query: 377 YNLQKLDIRGCRNLRELPTGIGKLKNMRSL---------LNGLTCSLKYMPIGISKLTSL 427
+L +++ C N+ +LP + L ++SL L + +
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550
Query: 428 RTLD 431
+
Sbjct: 551 QIFY 554
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 18/124 (14%)
Query: 317 SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPEN--VGKLMHLKYLNLSELHIERLPKTLC 374
+ L T+ + + L + ++ L +L +++S P
Sbjct: 719 PKDGNYKNTYLLTTIDLR-----FNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL 773
Query: 375 ELYNLQKLDIRGCRNL------RELPTGIGKLKNMRSL-LNGLTCSLKYMPIGISKLTSL 427
L+ IR R+ R+ PTGI ++ L + ++ + + L
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS--NDIRKVDEKL--TPQL 829
Query: 428 RTLD 431
LD
Sbjct: 830 YILD 833
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 15/126 (11%), Positives = 30/126 (23%), Gaps = 6/126 (4%)
Query: 307 HLGLKFKGGASFPMSIHGLNRLRTL-LIDDESPPNSSLDKIPENVGKLMHLKYLNLSELH 365
M + RL L+ D N + I ++ + +
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436
Query: 366 IERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLT 425
I + K + L LQ + + + + S L
Sbjct: 437 ITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAK----QYENEELSWSNLK 491
Query: 426 SLRTLD 431
L ++
Sbjct: 492 DLTDVE 497
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 17/129 (13%), Positives = 38/129 (29%), Gaps = 20/129 (15%)
Query: 315 GASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLPK-- 371
S M + T+ + + + K P + + + LS + +P+
Sbjct: 662 NISCSMDDYKGINASTVTLS-----YNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716
Query: 372 ------TLCELYNLQKLDIRGCRNLRELPTGI--GKLKNMRSL-LNGLTCSLKYMPIGIS 422
Y L +D+R + L L L + ++ ++ P
Sbjct: 717 LKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSY--NCFSSFPTQPL 773
Query: 423 KLTSLRTLD 431
+ L+
Sbjct: 774 NSSQLKAFG 782
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 30/143 (20%)
Query: 317 SFPMSIHGLNRLRTLLIDD----ESPPNSSLDK---------------IPENVGKLMHLK 357
+++ + E P ++SL K E G + L
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLT 598
Query: 358 YLNLSELHIERLPKTLCE-LYNLQKLDIRGCRNLRELP--TGIGKLKNMRSL------LN 408
L L IE +P+ C ++ L L+ +P + M S+ +
Sbjct: 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIG 657
Query: 409 GLTCSLKYMPIGISKLTSLRTLD 431
++ + K + T+
Sbjct: 658 SEGRNI-SCSMDDYKGINASTVT 679
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 1e-10
Identities = 58/290 (20%), Positives = 108/290 (37%), Gaps = 55/290 (18%)
Query: 12 ISVANA----IIEGLGESTSSLSEFQSLMSHIHRSIEGKKN-------------FLILND 54
+S+ ++ L L + +S + +IE K+ LIL+D
Sbjct: 185 VSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDD 244
Query: 55 VWDGDYNKWAPFFLCLNHGLHGSKILVTTRN-ELVARMMGSTNIIFIE-QLTEEECWSLF 112
VWD L + +IL+TTR+ + +MG +++ +E L E+ +
Sbjct: 245 VWDPWV---------LKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEIL 295
Query: 113 KRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLR-SKSTIKDWQRILDSEMW 171
F ED L I ++CKG P+ +IG LLR + + R L ++ +
Sbjct: 296 SL--FVNMKKED---LPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQF 350
Query: 172 K-----AEEIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQG 226
K + + L + +S L + K +++ ++ KD + + L LW
Sbjct: 351 KRIRKSSSYDYEALDEAMSISVEMLREDI--KDYYTDLSILQKDVKVPTKVLCVLW---- 404
Query: 227 YLNAEEYEEKEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDF 276
+ + E+ +S N + +HD+ DF
Sbjct: 405 -------DLETEEVEDILQEFVNKSL---LFCNRNGKSFCYYLHDLQVDF 444
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 3e-09
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 15/110 (13%)
Query: 325 LNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDI 384
L + D N+ L +PE L+ L++ + LP+ +L+ LD+
Sbjct: 139 PALLEYINAD-----NNQLTMLPE---LPTSLEVLSVRNNQLTFLPE---LPESLEALDV 187
Query: 385 RGCRNLRELPTGIGKLKNMRSLLNGLTCS---LKYMPIGISKLTSLRTLD 431
L LP + + C + ++P I L T+
Sbjct: 188 STNL-LESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTII 236
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 6e-07
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 10/104 (9%)
Query: 325 LNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDI 384
++ + E+ N ++ + E + L L+ L++ LP L + L+I
Sbjct: 33 WDKWEKQALPGENR-NEAVSLLKE--CLINQFSELQLNRLNLSSLPDNLPP--QITVLEI 87
Query: 385 RGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLR 428
L LP L+ L+ L +P + L L
Sbjct: 88 TQNA-LISLPELPASLEY----LDACDNRLSTLPELPASLKHLD 126
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 3e-06
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 21/115 (18%)
Query: 317 SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCEL 376
S P ++ ++ L I ++L +PE L+YL+ + + LP+
Sbjct: 73 SLPDNL--PPQITVLEIT-----QNALISLPELPA---SLEYLDACDNRLSTLPELPA-- 120
Query: 377 YNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLD 431
+L+ LD+ + L LP L+ + + N LT +P TSL L
Sbjct: 121 -SLKHLDVDNNQ-LTMLPELPALLEYINADNNQLTM----LP---ELPTSLEVLS 166
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 8e-05
Identities = 11/98 (11%), Positives = 26/98 (26%), Gaps = 10/98 (10%)
Query: 325 LNRLRTLLIDDESPPNSSLDKIPENVGKLMHLK----YLNLSELHIERLPKTLCELYNLQ 380
L L + + L+ +P + H + + E I +P+ + L
Sbjct: 179 PESLEALDVS-----TNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTC 233
Query: 381 KLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMP 418
+ + L + + +G
Sbjct: 234 TIILEDNP-LSSRIRESLSQQTAQPDYHGPRIYFSMSD 270
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 18/124 (14%)
Query: 317 SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPEN--VGKLMHLKYLNLSELHIERLPKTLC 374
+ L ++ + N L K+ ++ L +L ++LS + P
Sbjct: 479 DENENFKNTYLLTSIDLRF----NK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL 533
Query: 375 ELYNLQKLDIRGCRNL------RELPTGIGKLKNMRSL-LNGLTCSLKYMPIGISKLTSL 427
L+ IR R+ RE P GI ++ L + ++ + I ++
Sbjct: 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS--NDIRKVNEKI--TPNI 589
Query: 428 RTLD 431
LD
Sbjct: 590 SVLD 593
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 5e-09
Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 16/127 (12%)
Query: 319 PMSIHGLNRLRTLLIDD---ESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCE 375
++ + + S + D + K +++ +NLS I + PK L
Sbjct: 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454
Query: 376 -LYNLQKLDIRGCR-------NLRELPTGIGKLKNMRSL-LNGLTCSLKYMP--IGISKL 424
L +++ G +L++ + S+ L L + + L
Sbjct: 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF--NKLTKLSDDFRATTL 512
Query: 425 TSLRTLD 431
L +D
Sbjct: 513 PYLVGID 519
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 14/136 (10%), Positives = 36/136 (26%), Gaps = 26/136 (19%)
Query: 319 PMSIHGLNRLRTL-LIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELY 377
+ R LI D + I ++ + + +I + K + L
Sbjct: 147 KTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLT 206
Query: 378 NLQKLDIRG-------------------CRNLRELPTGIGKLKNMRSLL---NGLTCSLK 415
L++ + + + LK++ + L
Sbjct: 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL- 265
Query: 416 YMPIGISKLTSLRTLD 431
P + L ++ ++
Sbjct: 266 --PTFLKALPEMQLIN 279
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 26/206 (12%), Positives = 61/206 (29%), Gaps = 21/206 (10%)
Query: 303 GKVRHL---GLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYL 359
G+V L G G P +I L L L + + P+ + M +
Sbjct: 81 GRVTGLSLEGFGASG--RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138
Query: 360 NLSELHIERL-PKTLCELY--NLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKY 416
+H ++ +L K I + + + L+ ++ +
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ-IGQLSNNITF 197
Query: 417 MPIGISKLTSLRTLD----KFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDE 472
+ + +LT LR F + E + ++ + L +++ ++
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEV 256
Query: 473 AER-------LELKNMENLLHLYLWF 491
LK + + + +
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVAC 282
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 4e-08
Identities = 17/136 (12%), Positives = 42/136 (30%), Gaps = 16/136 (11%)
Query: 304 KVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSE 363
K +G ++ L +LR + + + + + + + +Y +
Sbjct: 184 KDTQIGQLSNNITFVSKAVMRLTKLRQFYMGN----SPFVAENICEAWENENSEYAQQYK 239
Query: 364 LHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSL---LNGLTCSLKYMPIG 420
L +L +++ C NL +LPT + L M+ + N +
Sbjct: 240 T----EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW 295
Query: 421 -----ISKLTSLRTLD 431
++ +
Sbjct: 296 QALADAPVGEKIQIIY 311
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 317 SFPMSIHGLNRLRTLLIDDESP--PNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLC 374
FP + L+ I ++ N +L + PE + L L + I ++ + +
Sbjct: 527 KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT 586
Query: 375 ELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLL 407
N+ LDI+ N+ + + +
Sbjct: 587 P--NISVLDIKDNPNISIDLSYVCPYIEAGMYM 617
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 346 IPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGI-GKLKNMR 404
+ ++ K+ L L +E L L++ + E+P G + +
Sbjct: 322 VETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVE 380
Query: 405 SL-LNGLTCSLKYMP--IGISKLTSLRTLD 431
+L LKY+P ++ + +D
Sbjct: 381 NLSFAH--NKLKYIPNIFDAKSVSVMSAID 408
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 16/116 (13%), Positives = 37/116 (31%), Gaps = 12/116 (10%)
Query: 319 PMSIHGLNRLRTLLIDDESPPNSSLDKIPEN--VGKLMHLKYLNLSELHIERLPKTLCEL 376
+ +R++ L + + +D + L++LNL I + +
Sbjct: 137 DLDEGCRSRVQYLDLK-----LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-F 190
Query: 377 YNLQKLDIRGCRNLRELPTGIGKLKNMRSL-LNGLTCSLKYMPIGISKLTSLRTLD 431
L+ LD+ + L + + + L L + + +L D
Sbjct: 191 AKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRN--NKLVLIEKALRFSQNLEHFD 243
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 18/110 (16%), Positives = 43/110 (39%), Gaps = 9/110 (8%)
Query: 325 LNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDI 384
+L+TL + N L + + +++L + + K L NL+ D+
Sbjct: 190 FAKLKTLDLSS----NK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244
Query: 385 RGCR-NLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKF 433
RG + L K + ++++ ++K + + ++ TL +
Sbjct: 245 RGNGFHCGTLRDFFSKNQRVQTVAKQ---TVKKLTGQNEEECTVPTLGHY 291
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 8e-08
Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 24/118 (20%)
Query: 325 LNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELY------- 377
LRTL + + L +P L+ L + H+ LP LC+L+
Sbjct: 80 PPELRTLEVS-----GNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT 134
Query: 378 -------NLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLR 428
LQ+L + + L LP +L L L +P+ S L L
Sbjct: 135 SLPVLPPGLQELSVSDNQ-LASLPALPSELCK----LWAYNNQLTSLPMLPSGLQELS 187
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 7e-07
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 355 HLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSL 414
LN+ E + LP L ++ L I NL LP +L+ + N LT
Sbjct: 41 GNAVLNVGESGLTTLPDCLPA--HITTLVIPDN-NLTSLPALPPELRTLEVSGNQLTS-- 95
Query: 415 KYMPIGISKLTSLRTLD 431
+P+ L L
Sbjct: 96 --LPVLPPGLLELSIFS 110
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 29/131 (22%), Positives = 43/131 (32%), Gaps = 31/131 (23%)
Query: 317 SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCEL 376
S PM GL L ++ L +P L L + LP
Sbjct: 175 SLPMLPSGLQELSVS--------DNQLASLPTLPS---ELYKLWAYNNRLTSLPALPS-- 221
Query: 377 YNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLT----------------CSLKYMPIG 420
L++L + G R L LP +LK + N LT L +P
Sbjct: 222 -GLKELIVSGNR-LTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPES 279
Query: 421 ISKLTSLRTLD 431
+ L+S T++
Sbjct: 280 LIHLSSETTVN 290
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 6e-06
Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 19/111 (17%)
Query: 317 SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCEL 376
S P L +L N+ L +P L+ L++S+ + LP
Sbjct: 155 SLPALPSELCKLWAY--------NNQLTSLPMLPS---GLQELSVSDNQLASLPTLPS-- 201
Query: 377 YNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSL 427
L KL R L LP LK + N LT +P+ S+L L
Sbjct: 202 -ELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLT----SLPVLPSELKEL 246
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 8e-04
Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 9/130 (6%)
Query: 325 LNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDI 384
+ L+ L++ + L +P L L++ + RLP++L L + +++
Sbjct: 240 PSELKELMVS-----GNRLTSLPMLPSGL---LSLSVYRNQLTRLPESLIHLSSETTVNL 291
Query: 385 RGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGST 444
G L E + +G + T L G
Sbjct: 292 EGNP-LSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEP 350
Query: 445 CRLECLKNFQ 454
+ F
Sbjct: 351 APADRWHMFG 360
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 323 HGLNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLPK-TLCELYNLQ 380
+GL L TL + D N L IP L LK L L IE +P + +L+
Sbjct: 109 NGLANLNTLELFD----NR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163
Query: 381 KLDIRGCRNLRELPTGI-GKLKNMRSL-LNGLTCSLKYMPIGISKLTSLRTLD 431
+LD+ + L + G L N+R L L C+L+ +P ++ L L LD
Sbjct: 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAM--CNLREIP-NLTPLIKLDELD 213
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 17/156 (10%)
Query: 286 LWLEIN--STKESVINAFGG--KVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNS 341
L L N S K + G +++L L F G + + GL +L L +S
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ-----HS 406
Query: 342 SLDKIPENV--GKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELPTGI- 397
+L ++ E L +L YL++S H L +L+ L + G I
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 398 GKLKNMRSL-LNGLTCSLKYMPIGI-SKLTSLRTLD 431
+L+N+ L L+ C L+ + + L+SL+ L+
Sbjct: 467 TELRNLTFLDLSQ--CQLEQLSPTAFNSLSSLQVLN 500
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 34/119 (28%), Positives = 46/119 (38%), Gaps = 14/119 (11%)
Query: 319 PMSIHGLNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLPK-TLCEL 376
S L+ L + + I + L HL L L+ I+ L L
Sbjct: 45 SYSFFSFPELQVLDLS-----RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99
Query: 377 YNLQKLDIRGCRNLRELPTG-IGKLKNMRSLL---NGLTCSLKYMPIGISKLTSLRTLD 431
+LQKL NL L IG LK ++ L N + S K +P S LT+L LD
Sbjct: 100 SSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQ-SFK-LPEYFSNLTNLEHLD 155
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 13/117 (11%)
Query: 321 SIHGLNRLRTLLIDDESPPN--SSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYN 378
S L L L + N S ++ LKYL+LS + + L
Sbjct: 342 SEVDLPSLEFLDLSR----NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397
Query: 379 LQKLDIRGCRNLRELPTGI--GKLKNMRSL-LNGLTCSLKYMPIGI-SKLTSLRTLD 431
L+ LD + L+++ L+N+ L ++ + GI + L+SL L
Sbjct: 398 LEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISH--THTRVAFNGIFNGLSSLEVLK 451
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 340 NSSLDKIPENVGKLMHLKYLNLSELHIERLPKT-LCELYNLQKLDIRGCRNLRELPTG-I 397
+ KIP+N+ K L+LS + L LQ LD+ C ++ + G
Sbjct: 16 ELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAY 72
Query: 398 GKLKNMRSL-LNGLTCSLKYMPIGI-SKLTSLRTLD 431
L ++ +L L G ++ + +G S L+SL+ L
Sbjct: 73 QSLSHLSTLILTG--NPIQSLALGAFSGLSSLQKLV 106
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 317 SFPMSIHGLNRLRTLLIDDESPPNSSLD-KIPENVGKLMHLKYLNLSELHIE-RLPKTLC 374
P ++ + L +L + + L IP ++G L L+ L L +E +P+ L
Sbjct: 409 KIPPTLSNCSELVSLHLS-----FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 375 ELYNLQKLDIRGCRNLR-ELPTGIGKLKNMRSLL---NGLTCSLKYMPIGISKLTSLRTL 430
+ L+ L + +L E+P+G+ N+ + N LT + P I +L +L L
Sbjct: 464 YVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEI---PKWIGRLENLAIL 519
Query: 431 D 431
Sbjct: 520 K 520
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 8e-06
Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 11/120 (9%)
Query: 317 SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE-RLPKTLCE 375
+ I + E + +L N++ T
Sbjct: 573 KRYVYIKNDGMKKECHGA--GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630
Query: 376 LYNLQKLDIRGCRNLR-ELPTGIGKLKNMRSL-L--NGLTCSLKYMPIGISKLTSLRTLD 431
++ LD+ L +P IG + + L L N ++ S+ P + L L LD
Sbjct: 631 NGSMMFLDM-SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI---PDEVGDLRGLNILD 686
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 5e-05
Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 13/118 (11%)
Query: 317 SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSE--LHIERLPKTLC 374
P + L + + + N +IP+ +G+L +L L LS +P L
Sbjct: 481 EIPSGLSNCTNLNWISLSN----NRLTGEIPKWIGRLENLAILKLSNNSFS-GNIPAELG 535
Query: 375 ELYNLQKLDIRGCRNLR-ELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLD 431
+ +L LD+ +P + K + N + + I +
Sbjct: 536 DCRSLIWLDLNT-NLFNGTIPAAMFKQSGKIA-ANFIAGKR---YVYIKNDGMKKECH 588
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 9/98 (9%)
Query: 340 NSSLDKIPENVGKLMHLKYLNLSELHIE---RLPKTLCELYNLQKLDIRGCRNLRELPTG 396
N K + K + + +E + L L +I
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 397 IGKLKNMRSLL---NGLTCSLKYMPIGISKLTSLRTLD 431
+M L N L+ + P I + L L+
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYI---PKEIGSMPYLFILN 662
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 26/140 (18%), Positives = 40/140 (28%), Gaps = 37/140 (26%)
Query: 321 SIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE-RLPKTLCELYNL 379
+ + L+ L I N + LK LN+S +P + +L
Sbjct: 218 FLGDCSALQHLDISG----NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK--SL 271
Query: 380 QKLDIRG--------------CRNLREL-----------PTGIGKLKNMRSLL---NGLT 411
Q L + C L L P G + SL N +
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 412 CSLKYMPIGISKLTSLRTLD 431
L + K+ L+ LD
Sbjct: 332 GELP--MDTLLKMRGLKVLD 349
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 9/98 (9%)
Query: 340 NSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTG--I 397
N + ++ L L+ L LS HI +L LD+ + T +
Sbjct: 63 NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSL 122
Query: 398 GKLKNMRSL---LNGLTCSLKYMPI-GISKLTSLRTLD 431
G ++ L N L + G KL SL LD
Sbjct: 123 GSCSGLKFLNVSSNTLDFPG---KVSGGLKLNSLEVLD 157
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 17/156 (10%)
Query: 286 LWLEIN--STKESVINAFGG--KVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNS 341
L L N S K + G +++L L F G + + GL +L L +S
Sbjct: 57 LSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ-----HS 111
Query: 342 SLDKIPENV--GKLMHLKYLNLSELHIERLPKTLCE-LYNLQKLDIRGCRNLRELPTGI- 397
+L ++ E L +L YL++S H + L +L+ L + G I
Sbjct: 112 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171
Query: 398 GKLKNMRSL-LNGLTCSLKYMPIGI-SKLTSLRTLD 431
+L+N+ L L+ C L+ + + L+SL+ L+
Sbjct: 172 TELRNLTFLDLSQ--CQLEQLSPTAFNSLSSLQVLN 205
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 13/115 (11%)
Query: 323 HGLNRLRTLLIDDESPPNSSLDKIPENVG---KLMHLKYLNLSELHIERLPKTLCELYNL 379
L +L L + ++ L LKYL+LS + + L L
Sbjct: 49 DKLTQLTKLSLS-----SNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 103
Query: 380 QKLDIRGCRNLRELPTGI-GKLKNMRSL-LNGLTCSLKYMPIGI-SKLTSLRTLD 431
+ LD + + + L+N+ L ++ + GI + L+SL L
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH--THTRVAFNGIFNGLSSLEVLK 156
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 16/116 (13%), Positives = 37/116 (31%), Gaps = 12/116 (10%)
Query: 319 PMSIHGLNRLRTLLIDDESPPNSSLDKIPEN--VGKLMHLKYLNLSELHIERLPKTLCEL 376
+ +R++ L + + +D + L++LNL I + +
Sbjct: 137 DLDEGCRSRVQYLDLK-----LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-F 190
Query: 377 YNLQKLDIRGCRNLRELPTGIGKLKNMRSL-LNGLTCSLKYMPIGISKLTSLRTLD 431
L+ LD+ + L + + + L L + + +L D
Sbjct: 191 AKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRN--NKLVLIEKALRFSQNLEHFD 243
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 325 LNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDI 384
+L+TL + N L + + +++L + + K L NL+ D+
Sbjct: 190 FAKLKTLDLSS----NK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244
Query: 385 RGCR-NLRELPTGIGKLKNMRSLLN 408
RG + L K + ++++
Sbjct: 245 RGNGFHCGTLRDFFSKNQRVQTVAK 269
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 346 IPENVGKLMHLKYLNLSELHIE---RLPKTLCELYNLQKLDIRGCRNLR-ELPTGIGKLK 401
+ + + + L+LS L++ +P +L L L L I G NL +P I KL
Sbjct: 42 LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101
Query: 402 NMRSLL---NGLTCSLKYMPIGISKLTSLRTLD 431
+ L ++ ++ P +S++ +L TLD
Sbjct: 102 QLHYLYITHTNVSGAI---PDFLSQIKTLVTLD 131
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Query: 309 GLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE- 367
GL P S+ L L L I N+ + IP + KL L YL ++ ++
Sbjct: 59 GLNLPKPYPIPSSLANLPYLNFLYIGGI---NNLVGPIPPAIAKLTQLHYLYITHTNVSG 115
Query: 368 RLPKTLCELYNLQKLDIRGCRNLR-ELPTGIGKLKNMRSLL---NGLTCSLKYMPIGISK 423
+P L ++ L LD L LP I L N+ + N ++ ++ P
Sbjct: 116 AIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAI---PDSYGS 171
Query: 424 LTSLRT 429
+ L T
Sbjct: 172 FSKLFT 177
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 11/117 (9%)
Query: 319 PMSIHGLNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLP-KTLCEL 376
+ GLN L L ++ + L IP L L L L L+I + + L
Sbjct: 145 HRAFSGLNSLEQLTLEK----CN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199
Query: 377 YNLQKLDIRGCRNLRELPTGIGKLKNMRSL-LNGLTCSLKYMPIG-ISKLTSLRTLD 431
Y L+ L+I L + N+ SL + C+L +P + L LR L+
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH--CNLTAVPYLAVRHLVYLRFLN 254
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 7e-06
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 11/113 (9%)
Query: 323 HGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLP-KTLCELYNLQK 381
L RL+ L I LD + N ++L L+++ ++ +P + L L+
Sbjct: 197 KRLYRLKVLEISH----WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252
Query: 382 LDIRGCRNLRELPTGI-GKLKNMRSL-LNGLTCSLKYMPIGI-SKLTSLRTLD 431
L++ + + + +L ++ + L G L + L LR L+
Sbjct: 253 LNLSYNP-ISTIEGSMLHELLRLQEIQLVG--GQLAVVEPYAFRGLNYLRVLN 302
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 38/194 (19%), Positives = 63/194 (32%), Gaps = 34/194 (17%)
Query: 319 PMSIHGLNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLPK-TLCEL 376
L L ++ + + + L +L+ L L ++ +P L
Sbjct: 49 QDEFASFPHLEELELN-----ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103
Query: 377 YNLQKLDIRGCRNLRELPTGI-GKLKNMRSL-LNGLTCSLKYMPIGI-SKLTSLRTLD-- 431
NL KLDI + + L + L N++SL + L Y+ S L SL L
Sbjct: 104 SNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGD--NDLVYISHRAFSGLNSLEQLTLE 160
Query: 432 --KFAVGGGVDGGSTCRLECLKNFQL-------IRKCGIEGLSNVSHLDEAERLELKNME 482
+ + L L +L IR + L + L+ + L M
Sbjct: 161 KCNLTS---IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217
Query: 483 -------NLLHLYL 489
NL L +
Sbjct: 218 PNCLYGLNLTSLSI 231
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 8e-07
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 323 HGLNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLPK-TLCELYNLQ 380
+GL L TL + D N L IP L L+ L L IE +P + +L
Sbjct: 120 NGLASLNTLELFD----NW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174
Query: 381 KLDIRGCRNLRELPTGI-GKLKNMRSL-LNGLTCSLKYMPIGISKLTSLRTLD 431
+LD+ + L + G L N++ L L C++K MP ++ L L L+
Sbjct: 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGM--CNIKDMP-NLTPLVGLEELE 224
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 9e-07
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 348 ENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLL 407
++ +L+ + +L+LS + LP L L L+ L L + G+ L ++ LL
Sbjct: 457 CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELL 514
Query: 408 ---NGLTCSLKYMPIGISKLTSLRTLD 431
N L S P+ L L+
Sbjct: 515 LCNNRLQQSAAIQPLV--SCPRLVLLN 539
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 9e-07
Identities = 29/144 (20%), Positives = 49/144 (34%), Gaps = 30/144 (20%)
Query: 304 KVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSE 363
+ L L G +S P L +L+ +SL ++PE L L N +
Sbjct: 72 QAHELELNNLGLSSLPELP---PHLESLVAS-----CNSLTELPELPQSLKSLLVDNNNL 123
Query: 364 LHIERLPKTLCELY----------------NLQKLDIRGCRNLRELPTGIGKLKNMRSLL 407
+ LP L L L+ +D+ L++LP L+ + +
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGN 182
Query: 408 NGLTCSLKYMPIGISKLTSLRTLD 431
N L +P + L L +
Sbjct: 183 NQLE----ELP-ELQNLPFLTAIY 201
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 29/159 (18%), Positives = 48/159 (30%), Gaps = 29/159 (18%)
Query: 284 ECLWLEINSTKESVINAFGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSL 343
++ + N K + + L ++ P L L S L
Sbjct: 240 TTIYADNNLLKT--LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI-----FSGL 292
Query: 344 DKIPENVGKLM--------------HLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRN 389
++P N+ L L+ LN+S + LP L++L
Sbjct: 293 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNH- 348
Query: 390 LRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLR 428
L E+P LK L+ L+ P + LR
Sbjct: 349 LAEVPELPQNLKQ----LHVEYNPLREFPDIPESVEDLR 383
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 11/102 (10%)
Query: 324 GLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLD 383
L +++ N+ L+++PE + L L + ++ LP +L+ L+
Sbjct: 213 LPLSLESIVAG-----NNILEELPE-LQNLPFLTTIYADNNLLKTLPDLPP---SLEALN 263
Query: 384 IRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLT 425
+R L +LP L + N + L +P + L
Sbjct: 264 VRDNY-LTDLPELPQSLTFLDVSENIFS-GLSELPPNLYYLN 303
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 8e-04
Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 26/118 (22%)
Query: 317 SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCEL 376
P L RL + L ++PE +LK L++ + P +
Sbjct: 331 ELPALPPRLERLIAS--------FNHLAEVPELPQ---NLKQLHVEYNPLREFPDIPESV 379
Query: 377 YNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCS---LKYMPIGISKLTSLRTLD 431
+L+ +L E+P LK L L+ P + LR
Sbjct: 380 EDLRM-----NSHLAEVPELPQNLKQ-------LHVETNPLREFPDIPESVEDLRMNS 425
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 27/180 (15%)
Query: 319 PMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYN 378
S L L L D S ++ LKYL+LS + + L
Sbjct: 340 AFSEVDLPSLEFL--DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397
Query: 379 LQKLDIRGCRNLRELPTGI-GKLKNMRSL-LNGLTCSLKYMPIG-ISKLTSLRTLD---- 431
L+ LD + + + L+N+ L ++ + G + L+SL L
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH--THTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 432 KFAVGGGVDGGSTCRLECLKNFQL--IRKCGIEGLSNVSHLDEAERLELKNMENLLHLYL 489
F + L+N + +C +E LS + ++ +L L +
Sbjct: 456 SFQ-----ENFLPDIFTELRNLTFLDLSQCQLEQLSPTA---------FNSLSSLQVLNM 501
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 26/117 (22%), Positives = 38/117 (32%), Gaps = 10/117 (8%)
Query: 319 PMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERL-PKTLCELY 377
S L+ L + L HL L L+ I+ L L
Sbjct: 45 SYSFFSFPELQVLDLSR----CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100
Query: 378 NLQKLDIRGCRNLRELPTGIGKLKNMRSL-LNGLTCSLKYMPIG--ISKLTSLRTLD 431
+LQKL IG LK ++ L + ++ + S LT+L LD
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAH--NLIQSFKLPEYFSNLTNLEHLD 155
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 7/90 (7%)
Query: 346 IPENVGKLMHLKYLNLSELHIERL-PKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMR 404
+ L+ L+LS I+ + L +L L + G L +++
Sbjct: 44 GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103
Query: 405 SLL---NGLTCSLKYMPIGISKLTSLRTLD 431
L+ L I L +L+ L+
Sbjct: 104 KLVAVETNLASLE---NFPIGHLKTLKELN 130
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 340 NSSLDKIPENVGKLMHLKYLNLSELHIERL-PKTLCELYNLQKLDIRGCRNLRELPTGIG 398
+ KIP+N+ K L+LS + L + LQ LD+ C
Sbjct: 16 ELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73
Query: 399 KLKNMRSL-LNGLTCSLKYMPIG-ISKLTSLRTLD 431
L ++ +L L G ++ + +G S L+SL+ L
Sbjct: 74 SLSHLSTLILTG--NPIQSLALGAFSGLSSLQKLV 106
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 13/112 (11%)
Query: 325 LNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLPK-TLCELYNLQKL 382
LN + + NS++ K+P + ++ LNL++L IE + + +QKL
Sbjct: 44 LNNQKIVTFK-----NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKL 98
Query: 383 DIRGCRNLRELPTGI-GKLKNMRSL-LNGLTCSLKYMPIGI-SKLTSLRTLD 431
+ +R LP + + + L L L +P GI L TL
Sbjct: 99 YMGFNA-IRYLPPHVFQNVPLLTVLVLER--NDLSSLPRGIFHNTPKLTTLS 147
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 11/94 (11%)
Query: 323 HGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKL 382
+ RL L I N+ L + + LK L+LS H+ + + + L+ L
Sbjct: 269 VKMQRLERLYIS-----NNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 323
Query: 383 DIRGCRNLRELPTGIGKLKNMRSLL---NGLTCS 413
+ + L +++L N C+
Sbjct: 324 YLDHNS-IVTLKLST--HHTLKNLTLSHNDWDCN 354
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 8e-05
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 353 LMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSL-LNGL 410
L ++LS +E++ ++ L++L I R L L + ++ L L+
Sbjct: 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSH- 304
Query: 411 TCSLKYMPIGISKLTSLRTLD 431
L ++ + L L
Sbjct: 305 -NHLLHVERNQPQFDRLENLY 324
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 21/114 (18%)
Query: 323 HGLNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLPK-TLCELYNLQ 380
+ L L+++ N L +P + L L++S ++ER+ T +LQ
Sbjct: 114 QNVPLLTVLVLER----ND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168
Query: 381 KLDIRGCRNLRELPTGIGKLKNMRSL---LNGLTCSLKYMPIGISKLTSLRTLD 431
L + R L + + + ++ N L+ ++ ++ LD
Sbjct: 169 NLQLSSNR-LTHVD--LSLIPSLFHANVSYNLLS--------TLAIPIAVEELD 211
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 7/116 (6%)
Query: 319 PMSIHGLNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLPKTLCELY 377
P GL + I+ + I N L+ L+L+ H+ LP L L
Sbjct: 245 PAVFEGLCEMSVESINLQ---KHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLS 301
Query: 378 NLQKLDIRGCRNLRELPTG-IGKLKNMRSL-LNGLTCSLKYMPIGISKLTSLRTLD 431
L+KL + + L ++ L + G T L+ + L +LR LD
Sbjct: 302 TLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 10/117 (8%)
Query: 319 PMSIHGLNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLPK-TLCEL 376
++ G L+ L + + I L+ L L HI +
Sbjct: 98 ETALSGPKALKHLFFI-----QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152
Query: 377 YNLQKLDIRGCRNLRELPTG-IGKLKNMRSL-LNGLTCSLKYMPIGISKLTSLRTLD 431
L+ LD + + L + L+ +L LN + + G ++L+
Sbjct: 153 EKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 15/121 (12%)
Query: 319 PMSIHGLNRLRTLLIDDESPPNSSLDKIPENV--GKLMHLKYLNLSELHIERLPK-TLCE 375
+ +L L + + L L LK LNLS ++ +
Sbjct: 393 TEAFKECPQLELLDLA-----FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447
Query: 376 LYNLQKLDIRGCRNLRELPTGIGKLKNMRSL----LNGLTCSLKYMPIGI-SKLTSLRTL 430
L LQ L+++G + L+ + L L+ C L + + L + +
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF--CDLSSIDQHAFTSLKMMNHV 505
Query: 431 D 431
D
Sbjct: 506 D 506
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 13/121 (10%)
Query: 316 ASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLPK-TL 373
F LN + + NS++ K+P + ++ LNL++L IE +
Sbjct: 41 VYFGFEDITLNNQKIVTFK-----NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF 95
Query: 374 CELYNLQKLDIRGCRNLRELPTGI-GKLKNMRSL-LNGLTCSLKYMPIGI-SKLTSLRTL 430
+ +QKL + +R LP + + + L L L +P GI L TL
Sbjct: 96 AYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLER--NDLSSLPRGIFHNTPKLTTL 152
Query: 431 D 431
Sbjct: 153 S 153
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 12/130 (9%)
Query: 321 SIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQ 380
+ RL L I N+ L + + LK L+LS H+ + + + L+
Sbjct: 273 PFVKMQRLERLYIS-----NNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 327
Query: 381 KLDIRGCRNLRELPTGIGKLKNMRSLL---NGLTC-SLKYMPIGISKLTSLRTLDKFAVG 436
L + + L + +++L N C SL+ + +++ +
Sbjct: 328 NLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID 384
Query: 437 GGVDGGSTCR 446
++ G C+
Sbjct: 385 YQLEHGLCCK 394
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 353 LMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSL-LNGL 410
L ++LS +E++ ++ L++L I R L L + ++ L L+
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSH- 310
Query: 411 TCSLKYMPIGISKLTSLRTLD 431
L ++ + L L
Sbjct: 311 -NHLLHVERNQPQFDRLENLY 330
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 8e-06
Identities = 35/159 (22%), Positives = 56/159 (35%), Gaps = 14/159 (8%)
Query: 279 FVSSKECLWLEINSTKESVINAFGG--KVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDE 336
+ L ++ + + + G + L L S P+ L L L +
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-- 108
Query: 337 SPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLPKTLCE-LYNLQKLDIRGCRNLRELP 394
+ L +P L L+ L L ++ LP L L+KL + L ELP
Sbjct: 109 ---FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELP 164
Query: 395 TGI-GKLKNMRSL-LNGLTCSLKYMPIGISKLTSLRTLD 431
G+ L+N+ +L L SL +P G L
Sbjct: 165 AGLLNGLENLDTLLLQ--ENSLYTIPKGFFGSHLLPFAF 201
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 319 PMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYN 378
++ RL L +D + L K+ + G L L L+LS ++ LP L
Sbjct: 48 LATLMPYTRLTQLNLD-----RAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPA 101
Query: 379 LQKLDIRGCRNLRELPTGI-GKLKNMRSL-LNGLTCSLKYMPIGI-SKLTSLRTLD 431
L LD+ R L LP G L ++ L L G LK +P G+ + L L
Sbjct: 102 LTVLDVSFNR-LTSLPLGALRGLGELQELYLKG--NELKTLPPGLLTPTPKLEKLS 154
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 9e-06
Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 12/112 (10%)
Query: 319 PMSIHGLNRLRTLLIDDESPPN--SSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCEL 376
L+TL++ N S+ K E + L +L L++S +P +
Sbjct: 354 SACKGAWPSLQTLVLSQ----NHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWP 409
Query: 377 YNLQKLDIRGCRNLRELPTGIGKLKNMRSL-LNGLTCSLKYMPIGISKLTSL 427
++ L++ +R + T I + + L ++ +L + + +L L
Sbjct: 410 EKMRFLNLSST-GIRVVKTCI--PQTLEVLDVSN--NNLDSFSLFLPRLQEL 456
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 11/120 (9%)
Query: 321 SIHGLNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLPKTLCE-LYN 378
+ L ++ T+ I P L V L +K + + + +P + + L +
Sbjct: 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335
Query: 379 LQKLDIRGCRNLRELPTG----IGKLKNMRSLL---NGLTCSLKYMPIGISKLTSLRTLD 431
L+ LD+ + E G ++++L+ N L S++ + L +L +LD
Sbjct: 336 LEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLD 393
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 319 PMSIHGLNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLPK-TLCEL 376
+ L+ L++ +S ++ I + L L++L+LS+ H+ L L
Sbjct: 43 HGDLRACANLQVLILK-----SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97
Query: 377 YNLQKLDIRGCRNLRELPTG--IGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLD 431
+L+ L++ G + L L N+++L G + + + LTSL L+
Sbjct: 98 SSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 340 NSSLDKIPENVGKLMHLKYLNLSELHIERLPKT-LCELYNLQKLDIRGCRNLRELPTGI- 397
+ S IP + +K L+LS I + L NLQ L ++ R + +
Sbjct: 14 SRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAF 70
Query: 398 GKLKNMRSL-LNGLTCSLKYMPIG-ISKLTSLRTLD 431
L ++ L L+ L + L+SL+ L+
Sbjct: 71 YSLGSLEHLDLSD--NHLSSLSSSWFGPLSSLKYLN 104
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 15/179 (8%)
Query: 322 IHGLNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLPK-TLCELYNL 379
L L+TL I + + +I L L L + L + +L + ++
Sbjct: 119 FPNLTNLQTLRIGN----VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174
Query: 380 QKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAV-GGG 438
L + + L L ++R L T ++ + + K A G
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234
Query: 439 VDGGSTCRLECLKNFQL------IRKCGIEGLSNVSHLDEAERLELKNME--NLLHLYL 489
+ S L L + L C + GL + + + EL +E + L++
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 14/119 (11%)
Query: 319 PMSIHGLNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERL-PKTLCEL 376
S + L+ L + ++ I + L HL L L+ I+ P + L
Sbjct: 49 SYSFSNFSELQWLDLS-----RCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103
Query: 377 YNLQKLDIRGCRNLRELPTG-IGKLKNMRSL-LNGLTCSLKYMPIG--ISKLTSLRTLD 431
+L+ L L L + IG+L ++ L + + + S LT+L +D
Sbjct: 104 TSLENLVAVET-KLASLESFPIGQLITLKKLNVAH--NFIHSCKLPAYFSNLTNLVHVD 159
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 12/116 (10%)
Query: 321 SIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSE--LHIERLPKTLCELYN 378
+ L +L L I ++ L L L ++ L N
Sbjct: 419 AFLSLEKLLYLDISY----TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474
Query: 379 LQKLDIRGCRNLRELPTGI-GKLKNMRSL-LNGLTCSLKYMPIG-ISKLTSLRTLD 431
L LD+ C L ++ G+ L ++ L ++ +L ++ ++L SL TLD
Sbjct: 475 LTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSH--NNLLFLDSSHYNQLYSLSTLD 527
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 19/124 (15%)
Query: 317 SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENV---GKLMHLKYLNLSELHIERLPKTL 373
S L L L + ++L L++L+LS +
Sbjct: 341 SISFKKVALPSLSYLDLS-----RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF 395
Query: 374 CELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLL------NGLTCSLKYMPIGISKLTSL 427
L LQ LD + L+ + ++ LL + LTSL
Sbjct: 396 MGLEELQHLDFQHST-LKRVTE-FSAFLSLEKLLYLDISYTNTKIDFDGI---FLGLTSL 450
Query: 428 RTLD 431
TL
Sbjct: 451 NTLK 454
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 39/191 (20%), Positives = 66/191 (34%), Gaps = 31/191 (16%)
Query: 319 PMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYN 378
P + GL + + L ++ ++L+ + I+ L + + +
Sbjct: 252 PSIMEGLCDVTIDEFRLTY--TNDFSDDIVKFHCLANVSAMSLAGVSIKYLED-VPKHFK 308
Query: 379 LQKLDIRGCRNLRELPTGIGKLKNMRSL---LNGLTCSLKYMPIGISKLTSLRTLD---- 431
Q L I C L++ PT L ++SL +N + + L SL LD
Sbjct: 309 WQSLSIIRC-QLKQFPT--LDLPFLKSLTLTMNKGS-----ISFKKVALPSLSYLDLSRN 360
Query: 432 --KFAVGGGVDGGSTCRLECL---KNFQLIRKCGIEGLSNVSHLD--------EAERLEL 478
F+ T L L N +I GL + HLD E
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420
Query: 479 KNMENLLHLYL 489
++E LL+L +
Sbjct: 421 LSLEKLLYLDI 431
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 37/229 (16%), Positives = 75/229 (32%), Gaps = 50/229 (21%)
Query: 287 WLEINSTKESVINAFGG--KVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLD 344
L +N S I+ K+ L L S + + L L + S +
Sbjct: 114 ELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVT-----ESKVK 168
Query: 345 KIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMR 404
+ + L L L+L+ IE + L L +L + + ++ + + +
Sbjct: 169 DVT-PIANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQ-ITDIT-PVANMTRLN 224
Query: 405 SLL---NGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRK--- 458
SL N +T ++ L+ L L+ T ++ + + + K
Sbjct: 225 SLKIGNNKIT-----DLSPLANLSQLTWLE----------IGTNQISDINAVKDLTKLKM 269
Query: 459 -----CGIEGLSNVSHLDEAERL-------------ELKNMENLLHLYL 489
I +S +++L + L + + NL L+L
Sbjct: 270 LNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 51/183 (27%)
Query: 321 SIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQ 380
++ L LR L ++ ++ I + L + LNL H L + L
Sbjct: 105 ALQNLTNLRELYLN-----EDNISDIS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLN 158
Query: 381 KLDIRGCRNLRELPTGIGKLKNMRSLL---NGLTCSLKYMPIGISKLTSLRTLDKFAVGG 437
L + + ++++ I L ++ SL N + ++ LTSL
Sbjct: 159 YLTVTESK-VKDVT-PIANLTDLYSLSLNYNQIE-----DISPLASLTSLHYFT------ 205
Query: 438 GVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERL-----------ELKNMENLLH 486
I ++ V+++ L L N+ L
Sbjct: 206 ------------------AYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTW 247
Query: 487 LYL 489
L +
Sbjct: 248 LEI 250
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 29/185 (15%), Positives = 67/185 (36%), Gaps = 33/185 (17%)
Query: 321 SIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQ 380
+ L + L++ + I + L +L+YLNL+ I + L L L
Sbjct: 39 TQEELESITKLVVA-----GEKVASIQG-IEYLTNLEYLNLNGNQITDIS-PLSNLVKLT 91
Query: 381 KLDIRGCRNLRELPTGIGKLKNMRSLL---NGLTCSLKYMPIGISKLTSLRTLDKFAVGG 437
L I N + + L N+R L + ++ ++ LT + +L+ +G
Sbjct: 92 NLYIGT--NKITDISALQNLTNLRELYLNEDNIS-----DISPLANLTKMYSLN---LGA 141
Query: 438 GVDGGSTCRLECLKNFQL--IRKCGIEGLSNVSHLDEAERLEL-----------KNMENL 484
+ L + + + ++ ++ +++L + L L ++ +L
Sbjct: 142 NHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSL 201
Query: 485 LHLYL 489
+
Sbjct: 202 HYFTA 206
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 4e-04
Identities = 29/154 (18%), Positives = 46/154 (29%), Gaps = 42/154 (27%)
Query: 348 ENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSL- 406
L L + + + T EL ++ KL + G + + GI L N+ L
Sbjct: 16 FPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGE-KVASIQ-GIEYLTNLEYLN 72
Query: 407 LNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSN 466
LNG + + +S L L L I I +S
Sbjct: 73 LNG--NQITDIS-PLSNLVKLTNLY------------------------IGTNKITDISA 105
Query: 467 VSHLDEAERLEL-----------KNMENLLHLYL 489
+ +L L L N+ + L L
Sbjct: 106 LQNLTNLRELYLNEDNISDISPLANLTKMYSLNL 139
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 17/126 (13%)
Query: 318 FPMSIHGLNRLRTLLIDDESPPN--SSLDKIPENVGKLMHLKYLNLSELHIERLP-KTLC 374
S + L+ L++ ++D P L +L L+LS +I + L
Sbjct: 446 TRNSFALVPSLQRLMLRR----VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501
Query: 375 ELYNLQKLDIRGCRNLRELPTGIGKLKNMRSL--LNGLT------CSLKYMPIG-ISKLT 425
L L+ LD++ NL L + L L+ L +P+ L
Sbjct: 502 GLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560
Query: 426 SLRTLD 431
L+ +D
Sbjct: 561 ELKIID 566
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 15/119 (12%)
Query: 319 PMSIHGLNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLP-KTLCEL 376
+ ++L +L + +++ K+ + KL LK LNL + +L KT
Sbjct: 42 AANFTRYSQLTSLDVG-----FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96
Query: 377 YNLQKLDIRGCRNLRELPTG-IGKLKNMRSLL---NGLTCSLKYMPIGISKLTSLRTLD 431
NL +L + +++++ K KN+ +L NGL+ S K +L +L+ L
Sbjct: 97 TNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLS-STK--LGTQVQLENLQELL 151
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 16/123 (13%)
Query: 319 PMSIHGLNRLRTLLIDDESPPN--SSLDKIPENVGKLMHLKYLNLSELHIERL-PKTLCE 375
+ L L+ LL+ + N +L ++ LK L LS I+ P
Sbjct: 138 LGTQVQLENLQELLLSN----NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193
Query: 376 LYNLQKLDIRGCRNLRELPTGIGKLKNMRSL----LNGLTCSLKYMPIGI---SKLTSLR 428
+ L L + + L + S+ L+ L K T+L
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN--SQLSTTSNTTFLGLKWTNLT 251
Query: 429 TLD 431
LD
Sbjct: 252 MLD 254
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 346 IPENVGKLMHLKYLNLSELHIERL-PKTLCELYNLQKLDIRGCRNLRELPTG-IGKLKNM 403
N + L L++ I +L P+ +L L+ L+++ L +L N+
Sbjct: 41 PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNL 99
Query: 404 RSLL---NGLTCSLKYMPIGISKLTSLRTLD 431
L N + +K K +L TLD
Sbjct: 100 TELHLMSNSIQ-KIK--NNPFVKQKNLITLD 127
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 16/124 (12%)
Query: 319 PMSIHGLNRLRTLLIDD----ESPPNSSLDKIPENVGKLMHLKYLNLSELHIERL-PKTL 373
+ GL +L L + +++ + L HL LNL + + +
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556
Query: 374 CELYNLQKLDIRGCRNLRELPTGI-GKLKNMRSLL---NGLTCSLKYMPIGI--SKLTSL 427
+L+ L+ +D+ NL LP + +++SL N + + + +L
Sbjct: 557 KDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN----LITSVEKKVFGPAFRNL 611
Query: 428 RTLD 431
LD
Sbjct: 612 TELD 615
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 340 NSSLDKIPENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELPTGI- 397
S + +IP ++ + L + + K +L+K++I L + +
Sbjct: 18 ESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 75
Query: 398 GKLKNMRSLLNGLTCSLKYMPIGI-SKLTSLRTLD 431
L + + +L Y+ L +L+ L
Sbjct: 76 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 4e-05
Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 52/184 (28%)
Query: 322 IHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381
I L + L ++ + L I + + L +L +L L E I+ L +L +L L+
Sbjct: 61 IQYLPNVTKLFLN-----GNKLTDI-KPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113
Query: 382 LDIRGCRNLRELPTGIGKLKNMRSLL---NGLTCSLKYMPIGISKLTSLRTLDKFAVGGG 438
L + + ++ G+ L + SL N +T +S+LT L TL
Sbjct: 114 LSLEHNG-ISDI-NGLVHLPQLESLYLGNNKIT-----DITVLSRLTKLDTLS------- 159
Query: 439 VDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERL-----------ELKNMENLLHL 487
+ I + ++ L + + L L ++NL L
Sbjct: 160 -----------------LEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVL 202
Query: 488 YLWF 491
L+
Sbjct: 203 ELFS 206
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 5e-05
Identities = 29/192 (15%), Positives = 60/192 (31%), Gaps = 45/192 (23%)
Query: 321 SIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQ 380
I + + D+ S+ +L + + + I+ + + + L N+
Sbjct: 13 QIFPDDAFAETIKDNLK--KKSVTDA-VTQNELNSIDQIIANNSDIKSV-QGIQYLPNVT 68
Query: 381 KLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPI----GISKLTSLRTLDKFAVG 436
KL + G L ++ + LKN+ L L I + L L++L
Sbjct: 69 KLFLNGN-KLTDI-KPLTNLKNLGWL------FLDENKIKDLSSLKDLKKLKSLS----- 115
Query: 437 GGVDGGSTCRLECLKNFQL--------IRKCGIEGLSNVSHLDEAERL-----------E 477
+ + + I ++ +S L + + L
Sbjct: 116 -----LEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 170
Query: 478 LKNMENLLHLYL 489
L + L +LYL
Sbjct: 171 LAGLTKLQNLYL 182
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 8e-05
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 340 NSSLDKIPENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELPTGI- 397
+ +IP + L L E H+ +P L N+ ++ + L++L +
Sbjct: 20 CKDIQRIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF 76
Query: 398 GKLKNMRSLLNGLTCSLKYMPIGI-SKLTSLRTLD 431
L + + T +L Y+ +L L+ L
Sbjct: 77 YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 9e-05
Identities = 24/156 (15%), Positives = 48/156 (30%), Gaps = 41/156 (26%)
Query: 348 ENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSL- 406
+ ++K L ++ +H + L NL++L I G + + L ++ L
Sbjct: 60 TGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118
Query: 407 --LNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGL 464
+ S+ I+ L + ++D L I I L
Sbjct: 119 ISHSAHDDSI---LTKINTLPKVNSID------------------LSYNGAITD--IMPL 155
Query: 465 SNVSHLDEAERLEL-----------KNMENLLHLYL 489
+ L + L + ++ L LY
Sbjct: 156 KTLPEL---KSLNIQFDGVHDYRGIEDFPKLNQLYA 188
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 32/179 (17%), Positives = 57/179 (31%), Gaps = 24/179 (13%)
Query: 263 DIMSCKMHDIVHDFAQFVSSKECLWLEINSTKESVINAFGGKVRHLGLKFKGGASFPMSI 322
D+ + I F+ S ++L N + HL +
Sbjct: 368 DLRDNALTTI-----HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFL 422
Query: 323 HGLNRLRTLLIDDESPPNSSLDKIPENV--GKLMHLKYLNLSELHIERLPKT------LC 374
+ L+ L+++ + + + L+ L L E ++ +T
Sbjct: 423 LRVPHLQILILN-----QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477
Query: 375 ELYNLQKLDIRGCRNLRELPTGI-GKLKNMRSL-LNGLTCSLKYMPIGISKLTSLRTLD 431
L +LQ L + L LP G+ L +R L LN L + +L LD
Sbjct: 478 GLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNS--NRLTVLSHN-DLPANLEILD 532
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 340 NSSLDKIPENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELPTGI- 397
+L ++P+ L + L LS +I + + L LQ L++ +
Sbjct: 13 FCNLTQVPQV---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69
Query: 398 GKLKNMRSL-LNGLTCSLKYMPIGI-SKLTSLRTLD 431
L N+R L L + ++ L L L
Sbjct: 70 RNLPNLRILDLGS--SKIYFLHPDAFQGLFHLFELR 103
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 340 NSSLDKIPENV-GKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELPTGI 397
+ + + V L LK LNL+ I ++ L NLQ L++ L EL +
Sbjct: 275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSN 333
Query: 398 -GKLKNMRSL-LNGLTCSLKYMPIGI-SKLTSLRTLD 431
L + + L + + L L+TLD
Sbjct: 334 FYGLPKVAYIDLQK--NHIAIIQDQTFKFLEKLQTLD 368
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 11/114 (9%)
Query: 323 HGLNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLP-KTLCELYNLQ 380
L+ L++ ++ ++ I E+ L L++L+LS ++ L L +L
Sbjct: 73 QRCVNLQALVLT-----SNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127
Query: 381 KLDIRGCRNLRELPTGI--GKLKNMRSLLNGLTCSLKYMPIGI-SKLTSLRTLD 431
L++ G + L L ++ L G + + + LT L L+
Sbjct: 128 FLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 8e-04
Identities = 21/139 (15%), Positives = 51/139 (36%), Gaps = 12/139 (8%)
Query: 286 LWLEINSTKESVINAFGG--KVRHLGLKFKGGASFPMSI-HGLNRLRTLLIDDESPPNSS 342
L ++ + + + V HL L K + + L + D
Sbjct: 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238
Query: 343 LDKIPENV----GKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGI- 397
++ K + + +++ + ++ K L ++ L +L+ + L+ +P GI
Sbjct: 239 FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIF 297
Query: 398 GKLKNMRSLL---NGLTCS 413
+L +++ + N CS
Sbjct: 298 DRLTSLQKIWLHTNPWDCS 316
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 32/134 (23%)
Query: 323 HGLNRLRTLLIDDESPPNS-SLDKIPENVGKLMHLKYLNLSELHIERLPK----TLCELY 377
GL + + + N + L YL +SE + +PK TL EL+
Sbjct: 144 SGLRNMNCIEMGG----NPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELH 199
Query: 378 ------------------NLQKLDIRGCRNLRELPTGI-GKLKNMRSL-LNGLTCSLKYM 417
L +L + + +R + G L +R L L+ L +
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDN--NKLSRV 256
Query: 418 PIGISKLTSLRTLD 431
P G+ L L+ +
Sbjct: 257 PAGLPDLKLLQVVY 270
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 13/116 (11%)
Query: 323 HGLNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLP--KTLCELYNL 379
GL+ L+ L+ ++L + G L LK LN++ I+ + L NL
Sbjct: 97 SGLSSLQKLVAV-----ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 380 QKLDIRGCRNLRELPTGI-GKLKNMRSLLNGLTCS---LKYMPIGISKLTSLRTLD 431
+ LD+ + ++ + L M L L S + ++ G K L+ L
Sbjct: 152 EHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA 206
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 6e-04
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 343 LDKIPENV-GKLMHLKYLNLSELHIERLP-KTLCELYNLQKLDIRGCRN-LRELPTGI-G 398
L + L+ L+LS I+ + L +L L + G N ++ L G
Sbjct: 40 LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG--NPIQSLALGAFS 97
Query: 399 KLKNMRSL-LNGLTCSLKYMPIGI-SKLTSLRTLD 431
L +++ L +L + L +L+ L+
Sbjct: 98 GLSSLQKLVAVE--TNLASLENFPIGHLKTLKELN 130
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 15/121 (12%)
Query: 319 PMSIHGLNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLP-KTLCEL 376
S L L+ L ++ + I N L L L L +L L
Sbjct: 47 ETSFSRLQDLQFLKVEQ----QTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102
Query: 377 YNLQKLDIRGCR-NLRELPTGI-GKLKNMRSLL---NGLTCSLKYMPIGI-SKLTSLRTL 430
NL+ L + C + L L ++ L+ N + ++ P + L
Sbjct: 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQ--PASFFLNMRRFHVL 159
Query: 431 D 431
D
Sbjct: 160 D 160
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 33/163 (20%)
Query: 345 KIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMR 404
K + V L +L +N S + + L L L + + + ++ + L N+
Sbjct: 59 KSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNN-QIADIT-PLANLTNLT 115
Query: 405 SLL---NGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRK--- 458
L N +T + LT+L L+ + + + L +++
Sbjct: 116 GLTLFNNQIT-----DIDPLKNLTNLNRLE-------LSSNTISDISALSGLTSLQQLSF 163
Query: 459 -CGIEGLSNVSHLDEAERLEL-----------KNMENLLHLYL 489
+ L +++L ERL++ + NL L
Sbjct: 164 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIA 206
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 345 KIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMR 404
+ KL +L+ L + I + L L NL +L + G + L+++ + L N+
Sbjct: 190 SDISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQ-LKDIG-TLASLTNLT 246
Query: 405 SLL---NGLTCSLKYMPIGISKLTSLRTLD 431
L N ++ +S LT L L
Sbjct: 247 DLDLANNQIS-----NLAPLSGLTKLTELK 271
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 9e-04
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 9/111 (8%)
Query: 321 SIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQ 380
+ L +L+ L N+ + + + L ++ +L+ I L L L +
Sbjct: 326 PVSSLTKLQRLFFY-----NNKVSDVSS-LANLTNINWLSAGHNQISDLT-PLANLTRIT 378
Query: 381 KLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLD 431
+L + P ++ + + +T P IS S D
Sbjct: 379 QLGLNDQ-AWTNAPVNYKANVSIPNTVKNVT-GALIAPATISDGGSYTEPD 427
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 323 HGLNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLPK-TLCELYNLQ 380
HGL RL TL +D L ++ + L L+YL L + ++ LP T +L NL
Sbjct: 102 HGLGRLHTLHLD-----RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156
Query: 381 KLDIRGCRN-LRELPTGI-GKLKNMRSL-LNGLTCSLKYMPIGI-SKLTSLRTLD 431
L + G N + +P L ++ L L+ + ++ L L TL
Sbjct: 157 HLFLHG--NRISSVPERAFRGLHSLDRLLLHQ--NRVAHVHPHAFRDLGRLMTLY 207
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 343 LDKIPENV-GKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELPTGI-GK 399
+ +P +L L L + R+ L L++LD+ LR +
Sbjct: 44 ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103
Query: 400 LKNMRSL-LNGLTCSLKYMPIGI-SKLTSLRTLD 431
L + +L L+ C L+ + G+ L +L+ L
Sbjct: 104 LGRLHTLHLDR--CGLQELGPGLFRGLAALQYLY 135
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 29/161 (18%), Positives = 51/161 (31%), Gaps = 33/161 (20%)
Query: 348 ENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLL 407
L + NL + + L + EL +Q + N++ L G+ N++ L
Sbjct: 13 FPDPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNS-NIQSL-AGMQFFTNLKELH 69
Query: 408 ---NGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQL----IRKCG 460
N ++ L + LT L L V+ L + + L +
Sbjct: 70 LSHNQIS-DLS----PLKDLTKLEELS-------VNRNRLKNLNGIPSACLSRLFLDNNE 117
Query: 461 IEGLSNVSHLDEAERL-----------ELKNMENLLHLYLW 490
+ ++ HL E L L + L L L
Sbjct: 118 LRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLH 158
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 342 SLDKIPENV-GKLMHLKYLNLSELHIERLPKTLCE-LYNLQKLDIRGCRNLRELPTGIGK 399
+ ++ + L L+ L +S I+ L ++ + L+ LD+ + L ++
Sbjct: 32 YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKIS--CHP 88
Query: 400 LKNMRSLLNGLTCSLKYMPIG--ISKLTSLRTLD 431
N++ L+ + +PI ++ L+ L
Sbjct: 89 TVNLK-HLDLSFNAFDALPICKEFGNMSQLKFLG 121
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 33/135 (24%)
Query: 323 HGLNRLRTLLIDDESPPNS-SLDKIPENV-GKLMHLKYLNLSELHIERLPK----TLCEL 376
+GLN++ + + N I + L Y+ +++ +I +P+ +L EL
Sbjct: 142 NGLNQMIVVELGT----NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL 197
Query: 377 Y------------------NLQKLDIRGCRNLRELPTGI-GKLKNMRSL-LNGLTCSLKY 416
+ NL KL + + + G ++R L LN L
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNN--NKLVK 254
Query: 417 MPIGISKLTSLRTLD 431
+P G++ ++ +
Sbjct: 255 VPGGLADHKYIQVVY 269
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 32/183 (17%), Positives = 62/183 (33%), Gaps = 52/183 (28%)
Query: 321 SIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQ 380
+ L+ + TL + + I E V L +L L L + I L L L +
Sbjct: 36 TQADLDGITTLSAF-----GTGVTTI-EGVQYLNNLIGLELKDNQITDLA-PLKNLTKIT 88
Query: 381 KLDIRGCRNLRELPTGIGKLKNMRSLL---NGLTCSLKYMPIGISKLTSLRTLDKFAVGG 437
+L++ G L+ + I L+++++L +T ++ L++L+ L
Sbjct: 89 ELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQIT-----DVTPLAGLSNLQVLY------ 135
Query: 438 GVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERL-----------ELKNMENLLH 486
+ I +S ++ L + L L N+ L
Sbjct: 136 ------------------LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177
Query: 487 LYL 489
L
Sbjct: 178 LKA 180
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 677 | |||
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 100.0 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 99.94 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.93 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.89 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.88 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.88 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.88 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.88 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.88 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.88 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.88 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 99.87 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.87 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.86 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.86 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.86 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.86 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.86 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.86 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.85 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.85 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.85 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.84 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.84 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.84 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.84 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.84 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.84 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.84 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.83 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.83 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.83 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.82 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.82 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.82 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.82 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.82 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.82 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.82 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.82 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.82 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.81 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.81 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.81 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.81 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.8 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.79 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.78 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.78 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.78 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.77 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.77 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.76 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.76 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.76 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.74 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.74 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.73 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.73 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.72 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.72 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.72 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.7 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.7 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.69 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.69 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.68 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.67 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.66 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.65 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.65 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.64 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.64 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.63 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.63 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.62 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.62 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.62 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.61 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.61 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.61 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.59 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.59 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.59 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.59 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.58 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.58 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.58 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.57 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.57 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.54 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.53 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.52 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.51 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.5 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.49 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.49 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.44 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.44 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.43 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.43 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.42 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.42 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.41 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.4 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.38 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.38 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.36 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.35 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.35 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.32 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.31 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.31 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.31 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.3 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.3 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.3 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.29 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.29 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.28 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.27 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.26 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.24 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.24 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.2 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.19 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.19 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.16 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.15 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.14 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.13 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.08 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.07 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.06 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.05 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.04 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.98 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.96 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.95 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.88 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.86 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.86 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.82 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.81 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.55 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.53 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.48 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.32 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 98.25 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.22 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.15 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.02 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.91 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.9 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.87 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.71 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 97.69 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.66 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.63 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 97.59 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.51 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 97.48 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.44 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.41 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 97.32 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 97.27 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.27 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.24 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 96.99 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 96.71 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.33 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 96.06 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 95.94 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 95.9 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 94.4 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 93.84 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 93.66 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 93.19 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 91.22 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 90.9 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 89.01 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 88.71 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 88.23 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 85.39 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 83.54 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 82.68 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 82.6 |
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-35 Score=322.43 Aligned_cols=261 Identities=17% Similarity=0.251 Sum_probs=207.2
Q ss_pred CeEEecCCC--CHHHHHHHHHHHhcCCCC-------CCchHHHHHHHHHHHcCCc-cEEEEEECCcCCCccchhhhhhhh
Q 038430 1 MWVCVSDTF--EEISVANAIIEGLGESTS-------SLSEFQSLMSHIHRSIEGK-KNFLILNDVWDGDYNKWAPFFLCL 70 (677)
Q Consensus 1 ~WV~vs~~~--~~~~i~~~i~~~l~~~~~-------~~~~~~~~~~~i~~~L~~k-r~LlVlDdvw~~~~~~~~~l~~~~ 70 (677)
+||+|++.+ ++.+++++|+++++.... +..+.+.++..+++.|+++ ||||||||||+.++..|..
T Consensus 188 ~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~----- 262 (549)
T 2a5y_B 188 VWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ----- 262 (549)
T ss_dssp EEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH-----
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc-----
Confidence 599999985 899999999999987521 2235677889999999996 9999999999863222332
Q ss_pred cCCCCCcEEEEEcCchHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHH
Q 038430 71 NHGLHGSKILVTTRNELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVI 149 (677)
Q Consensus 71 ~~~~~gS~IiiTTR~~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~i 149 (677)
.+||+||||||++.++..++ ...+|+|++|+.+|||+||+++||+... .+.+.+++++|+++|+|+||||+++
T Consensus 263 ---~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~ 336 (549)
T 2a5y_B 263 ---ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMF 336 (549)
T ss_dssp ---HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHH
Confidence 16999999999999998876 4468999999999999999999986532 3678889999999999999999999
Q ss_pred HHHhccCCCHHHHHHHHhhhhhhhhhcCCCccceeecccccCCCchhhhHHHh-----------hhccCCCCceecHHHH
Q 038430 150 GNLLRSKSTIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFS-----------YCAVFPKDYNMYKEEL 218 (677)
Q Consensus 150 g~~L~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl-----------~~a~fp~~~~i~~~~l 218 (677)
|+.|+.+ +++ |...+....+.. ....+..++.+||+.|+. ++|.||+ |||+||+++.++
T Consensus 337 g~~l~~~-~w~-~~~~l~~~l~~~--~~~~i~~~l~~Sy~~L~~--~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~---- 406 (549)
T 2a5y_B 337 FKSCEPK-TFE-KMAQLNNKLESR--GLVGVECITPYSYKSLAM--ALQRCVEVLSDEDRSALAFAVVMPPGVDIP---- 406 (549)
T ss_dssp HTTCCSS-SHH-HHHHHHHHHHHH--CSSTTCCCSSSSSSSHHH--HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----
T ss_pred HHHhccc-hHH-HHHHhHHHhhcc--cHHHHHHHHhcccccccH--HHHHHHhccchhhhhHhhheeeeCCCCeee----
Confidence 9999776 332 223333322211 356799999999999998 9999999 999999999998
Q ss_pred HHHHHHc--CCcCcch-hhhHHHhHHHHHHHHHHccCccccccCCCCCeeeEEeChhHHHHHHHHhccccE
Q 038430 219 ISLWMAQ--GYLNAEE-YEEKEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECL 286 (677)
Q Consensus 219 i~~wi~~--g~i~~~~-~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mhdli~d~~~~~~~~~~~ 286 (677)
+.+|+++ ||+.... ..+.++.+. ++++|+++++++....+ ....|+|||+++++++.++..++.
T Consensus 407 i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 407 VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 8899999 9997665 444666676 99999999999987643 345799999999999988877654
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-27 Score=265.13 Aligned_cols=230 Identities=20% Similarity=0.276 Sum_probs=180.8
Q ss_pred CeEEecCCCCHHHHHHHHHHHhcCCC------CC-----CchHHHHHHHHHHHc---CCccEEEEEECCcCCCccchhhh
Q 038430 1 MWVCVSDTFEEISVANAIIEGLGEST------SS-----LSEFQSLMSHIHRSI---EGKKNFLILNDVWDGDYNKWAPF 66 (677)
Q Consensus 1 ~WV~vs~~~~~~~i~~~i~~~l~~~~------~~-----~~~~~~~~~~i~~~L---~~kr~LlVlDdvw~~~~~~~~~l 66 (677)
+||+|++.++...++..|++.++... .+ ..+.+.+...+++.| .+||+||||||||+. ..|..+
T Consensus 185 ~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f 262 (1221)
T 1vt4_I 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF 262 (1221)
T ss_dssp EEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh
Confidence 59999999999999998887643211 11 124556677777766 789999999999985 566553
Q ss_pred hhhhcCCCCCcEEEEEcCchHHHHhcCCCCeEecC------CCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhc
Q 038430 67 FLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIE------QLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCK 140 (677)
Q Consensus 67 ~~~~~~~~~gS~IiiTTR~~~v~~~~~~~~~~~v~------~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~ 140 (677)
+ +|||||||||++.++..+.....|+|+ +|+.+|||+||++. ++.. ..++..++ |+
T Consensus 263 ----~---pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~-------~eeL~~eI---Cg 324 (1221)
T 1vt4_I 263 ----N---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCR-------PQDLPREV---LT 324 (1221)
T ss_dssp ----H---SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH-HCCC-------TTTHHHHH---CC
T ss_pred ----C---CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHH-cCCC-------HHHHHHHH---hC
Confidence 2 699999999999998765444467777 99999999999998 3322 22334444 99
Q ss_pred CCchHHHHHHHHhccC-CCHHHHHHHHhhhhhhhhhcCCCccceeecccccCCCchhh-hHHHhhhccCCCCceecHHHH
Q 038430 141 GLPIAAKVIGNLLRSK-STIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMV-KRFFSYCAVFPKDYNMYKEEL 218 (677)
Q Consensus 141 GlPLal~~ig~~L~~~-~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~-k~~fl~~a~fp~~~~i~~~~l 218 (677)
|+||||+++|+.|+.+ .+..+|+.. ....+..++.+||+.|++ +. |.||++||+||+++.+++..+
T Consensus 325 GLPLALkLaGs~Lr~k~~s~eeW~~~----------~~~~I~aaLelSYd~Lp~--eelK~cFL~LAIFPed~~I~~elL 392 (1221)
T 1vt4_I 325 TNPRRLSIIAESIRDGLATWDNWKHV----------NCDKLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILL 392 (1221)
T ss_dssp CCHHHHHHHHHHHHHSCSSHHHHHHC----------SCHHHHHHHHHHHHHSCT--THHHHHHHHTTSSCTTSCEEHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHhcC----------ChhHHHHHHHHHHHhCCH--HHHHHHHHHHhCCCCCCCCCHHHH
Confidence 9999999999999987 467888753 124578889999999999 78 999999999999999999999
Q ss_pred HHHHHHcCCcCcchhhhHHHhHHHHHHHHHHccCccccccCCCCCeeeEEeChhHHHHH
Q 038430 219 ISLWMAQGYLNAEEYEEKEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFA 277 (677)
Q Consensus 219 i~~wi~~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mhdli~d~~ 277 (677)
+.+|+++| ++.+..++++|++++|++.. +....|+||+++++++
T Consensus 393 a~LW~aeG----------eedAe~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 393 SLIWFDVI----------KSDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHCSSC----------SHHHHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHH
T ss_pred HHHhcCCC----------HHHHHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHh
Confidence 99999876 12477899999999999873 2234699999998865
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=275.39 Aligned_cols=252 Identities=21% Similarity=0.327 Sum_probs=200.2
Q ss_pred CeEEecCCC--CHHHHHHHHHHHhcCCCC----CCchHHHHHHHHHHHcCCc--cEEEEEECCcCCCccchhhhhhhhcC
Q 038430 1 MWVCVSDTF--EEISVANAIIEGLGESTS----SLSEFQSLMSHIHRSIEGK--KNFLILNDVWDGDYNKWAPFFLCLNH 72 (677)
Q Consensus 1 ~WV~vs~~~--~~~~i~~~i~~~l~~~~~----~~~~~~~~~~~i~~~L~~k--r~LlVlDdvw~~~~~~~~~l~~~~~~ 72 (677)
+||++++.. +....++.++..+..... ...+.+.+...+++.+.++ |+||||||||+. ..|..+
T Consensus 183 ~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~------ 254 (1249)
T 3sfz_A 183 HWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF------ 254 (1249)
T ss_dssp EEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT------
T ss_pred EEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh------
Confidence 399999854 455567788888876542 2357788999999999877 999999999975 444432
Q ss_pred CCCCcEEEEEcCchHHHHh-cCCCCeEecCC-CChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHH
Q 038430 73 GLHGSKILVTTRNELVARM-MGSTNIIFIEQ-LTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIG 150 (677)
Q Consensus 73 ~~~gS~IiiTTR~~~v~~~-~~~~~~~~v~~-L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig 150 (677)
.+||+||||||++.++.. ++....+++++ |+.+||++||...++.. .+.+.+++++|+++|+|+||||+++|
T Consensus 255 -~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~ 328 (1249)
T 3sfz_A 255 -DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIG 328 (1249)
T ss_dssp -CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHH
T ss_pred -cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHH
Confidence 579999999999999865 45667899996 99999999999988432 23456779999999999999999999
Q ss_pred HHhccCCCHHHHHHHHhhhhhhhh----h----cCCCccceeecccccCCCchhhhHHHhhhccCCCCceecHHHHHHHH
Q 038430 151 NLLRSKSTIKDWQRILDSEMWKAE----E----IGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLW 222 (677)
Q Consensus 151 ~~L~~~~~~~~w~~~l~~~~~~~~----~----~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp~~~~i~~~~li~~w 222 (677)
++|+.+. ..|+..++....... . ....+..++.+||+.|++ +.|.||++||+||+++.+++..++.+|
T Consensus 329 ~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~--~~~~~~~~l~~f~~~~~i~~~~~~~~~ 404 (1249)
T 3sfz_A 329 ALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE--DIKDYYTDLSILQKDVKVPTKVLCVLW 404 (1249)
T ss_dssp HHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT--TTHHHHHHGGGSCTTCCEEHHHHHHHH
T ss_pred HHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH--HHHHHHHHhCccCCCCeeCHHHHHHHh
Confidence 9998874 467777654211110 0 013478889999999999 899999999999999999999999999
Q ss_pred HHcCCcCcchhhhHHHhHHHHHHHHHHccCccccccCCCCCeeeEEeChhHHHHHHHHhccc
Q 038430 223 MAQGYLNAEEYEEKEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKE 284 (677)
Q Consensus 223 i~~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mhdli~d~~~~~~~~~ 284 (677)
.++ ++.+.+++++|++++|++... .+....|+||++++++++....++
T Consensus 405 ~~~-----------~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 405 DLE-----------TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp TCC-----------HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred CCC-----------HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 654 356788999999999998644 344457999999999999886655
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.3e-23 Score=223.25 Aligned_cols=292 Identities=18% Similarity=0.165 Sum_probs=216.2
Q ss_pred cCCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchh-hccC
Q 038430 300 AFGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKT-LCEL 376 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l 376 (677)
.++..++.|++++|.+..++ ..|..+++|++|++++ + .+..+ |..++++++|++|+|++|.++.+|.. +.++
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~----n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 103 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE----N-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTT----S-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCC----C-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCC
Confidence 45778999999999998875 6899999999999996 3 34444 67789999999999999999988875 7899
Q ss_pred CCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcC
Q 038430 377 YNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLI 456 (677)
Q Consensus 377 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L 456 (677)
++|++|+|++|......|..+..+++|++|++++|......|..++.+++|++|++.++... ......+..+++|
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~~L 178 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-----SIPTEALSHLHGL 178 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-----SCCHHHHTTCTTC
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-----ccChhHhcccCCC
Confidence 99999999999844555678999999999999999655555677999999999999988765 3344567888999
Q ss_pred CcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhh
Q 038430 457 RKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEE 536 (677)
Q Consensus 457 ~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (677)
+.|.+.+.. +.......+..+++|+.|+++.|....
T Consensus 179 ~~L~l~~n~----i~~~~~~~~~~l~~L~~L~l~~~~~~~---------------------------------------- 214 (477)
T 2id5_A 179 IVLRLRHLN----INAIRDYSFKRLYRLKVLEISHWPYLD---------------------------------------- 214 (477)
T ss_dssp CEEEEESCC----CCEECTTCSCSCTTCCEEEEECCTTCC----------------------------------------
T ss_pred cEEeCCCCc----CcEeChhhcccCcccceeeCCCCcccc----------------------------------------
Confidence 999988743 222333457788999999999872111
Q ss_pred hhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCCh-hHhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeecccccc
Q 038430 537 RRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPK-WLTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHLKS 612 (677)
Q Consensus 537 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~~~ 612 (677)
.+........+|+.|++++|.+..+|. .+..+++|+.|+|++| .+..++. +..++ |+.|++++ +.
T Consensus 215 ---------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-n~ 283 (477)
T 2id5_A 215 ---------TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVG-GQ 283 (477)
T ss_dssp ---------EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCS-SC
T ss_pred ---------ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCC-Cc
Confidence 011122233488999999998888884 4668889999999888 4555553 77888 99999987 45
Q ss_pred ceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 613 VKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 613 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
++.+....+ ..+++|+.|+++++.-..++.. .+..+++|++|++
T Consensus 284 l~~~~~~~~------------------~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l 327 (477)
T 2id5_A 284 LAVVEPYAF------------------RGLNYLRVLNVSGNQLTTLEES---VFHSVGNLETLIL 327 (477)
T ss_dssp CSEECTTTB------------------TTCTTCCEEECCSSCCSCCCGG---GBSCGGGCCEEEC
T ss_pred cceECHHHh------------------cCcccCCEEECCCCcCceeCHh---HcCCCcccCEEEc
Confidence 666644332 4567777777777654333321 1224667776654
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-23 Score=231.16 Aligned_cols=332 Identities=14% Similarity=0.121 Sum_probs=215.9
Q ss_pred CCceEEEEEEecCCCc------------------cccccc--CCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEe
Q 038430 302 GGKVRHLGLKFKGGAS------------------FPMSIH--GLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNL 361 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~------------------~p~~~~--~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~L 361 (677)
..+++.|++++|.+.. +|..+. ++++|++|++++ +.....+|..++++++|++|++
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~----n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN----CPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC----CTTCSSCCTTTTTCSSCCEEEC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecC----CcCCccChHHHhcCCCCCEEEC
Confidence 5689999999999987 898888 999999999997 5556788988999999999999
Q ss_pred cCcc-cc--ccchhhccC------CCcCEEEecCCCCccccCc--ccccccccceeecCccCCCcccCCcCCCCCCCCcc
Q 038430 362 SELH-IE--RLPKTLCEL------YNLQKLDIRGCRNLRELPT--GIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTL 430 (677)
Q Consensus 362 s~~~-i~--~lp~~i~~l------~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 430 (677)
++|. ++ .+|..++++ ++|++|++++|. +..+|. .++++++|++|++++|...+.+| .++.+++|++|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence 9998 87 488888877 999999999998 669998 89999999999999996555888 88899999999
Q ss_pred CceeeCCCcCCCCcccccccccCCc-CCcccccCccCCCChhHHHHhhccCC--cccCceEEEeecCCCCCccccccccc
Q 038430 431 DKFAVGGGVDGGSTCRLECLKNFQL-IRKCGIEGLSNVSHLDEAERLELKNM--ENLLHLYLWFEVVDREDEDWEDEEEN 507 (677)
Q Consensus 431 ~l~~~~~~~~~~~~~~~~~L~~l~~-L~~L~i~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~ 507 (677)
++.++.... ....+..+++ |+.|.+++..-. .+ +..+..+ ++|+.|+++.|......|.+...
T Consensus 359 ~L~~N~l~~------lp~~l~~l~~~L~~L~Ls~N~l~-~l----p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~--- 424 (636)
T 4eco_A 359 NLAYNQITE------IPANFCGFTEQVENLSFAHNKLK-YI----PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP--- 424 (636)
T ss_dssp ECCSSEEEE------CCTTSEEECTTCCEEECCSSCCS-SC----CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT---
T ss_pred ECCCCcccc------ccHhhhhhcccCcEEEccCCcCc-cc----chhhhhcccCccCEEECcCCcCCCcchhhhcc---
Confidence 988776542 3455777888 888888875321 22 2233333 47888888877332211111000
Q ss_pred ccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhh-hcCCCCCCcEEEEecCCCCCCChhHhh--------cc
Q 038430 508 EDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLE-ALQPPLNVEKLWILFNGGNILPKWLTS--------LT 578 (677)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~lp~~~~~--------l~ 578 (677)
...... ......+......... .++. .+..+++|+.|++++|.+..+|..+.. ++
T Consensus 425 -------------~~~~~~-~~~~L~~L~Ls~N~l~--~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~ 488 (636)
T 4eco_A 425 -------------LDPTPF-KGINVSSINLSNNQIS--KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY 488 (636)
T ss_dssp -------------TCSSCC-CCCCEEEEECCSSCCC--SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGG
T ss_pred -------------cccccc-cCCCCCEEECcCCccC--cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccC
Confidence 000000 0000000000000000 1111 122356788888888877777765442 22
Q ss_pred CCCeEEEeCCCCCCcCCC-CC--Ccc-cceeeccccccceEeCCccccCCC-----------CCCCCCCCCCCCcccCCC
Q 038430 579 NLSDLKLVFCENCEQLPP-LG--KLP-LEKLELCHLKSVKRVGNEFLEIEE-----------SEDDPSSSSSSSSVTAFP 643 (677)
Q Consensus 579 ~L~~L~l~~c~~~~~l~~-l~--~l~-L~~L~l~~~~~l~~i~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 643 (677)
+|++|++++| .+..+|. +. .++ |+.|++++ +.++.++..+..... ..++.+.+..|.....++
T Consensus 489 ~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 489 LLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSY-NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp GCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCS-SCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred CccEEECcCC-cCCccChhhhhccCCCcCEEECCC-CCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 7888888877 4556665 43 777 88888877 345545433321110 023445666666666677
Q ss_pred ccceeeecccccCccccccCCccccCCCcccccC
Q 038430 644 KVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 644 ~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
+|++|++++|.-..++.. .+++|++|+|
T Consensus 567 ~L~~L~Ls~N~l~~ip~~------~~~~L~~L~L 594 (636)
T 4eco_A 567 SLTQLQIGSNDIRKVNEK------ITPNISVLDI 594 (636)
T ss_dssp SCCEEECCSSCCCBCCSC------CCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCHh------HhCcCCEEEC
Confidence 777777776655434322 3366666654
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-22 Score=207.90 Aligned_cols=274 Identities=18% Similarity=0.158 Sum_probs=179.2
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+++.|++++|.+..++. +..+++|++|++++| .+..+| .+..+++|++|++++|.+..+|. +..+++|++
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-----~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-----KITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-----CCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred cCCccEEEccCCccccchh-hhcCCcCCEEEccCC-----cccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence 4567777777777666664 666777777777642 333343 46667777777777777766655 667777777
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++++|.....++. +..+++|++|++++|. +..++. ++.+++|++|++.++.... +..+..+++|+.+.+
T Consensus 137 L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l~~-------~~~~~~l~~L~~L~l 206 (347)
T 4fmz_A 137 LNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIED-------ISPLASLTSLHYFTA 206 (347)
T ss_dssp EECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCCCC-------CGGGGGCTTCCEEEC
T ss_pred EECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCcccc-------cccccCCCccceeec
Confidence 77777764554444 6677777777777763 333333 6666777777766655432 222566666666666
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcch
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKN 541 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (677)
.+..-. ... .+..+++|+.|++++|....
T Consensus 207 ~~n~l~-~~~-----~~~~~~~L~~L~l~~n~l~~--------------------------------------------- 235 (347)
T 4fmz_A 207 YVNQIT-DIT-----PVANMTRLNSLKIGNNKITD--------------------------------------------- 235 (347)
T ss_dssp CSSCCC-CCG-----GGGGCTTCCEEECCSSCCCC---------------------------------------------
T ss_pred ccCCCC-CCc-----hhhcCCcCCEEEccCCccCC---------------------------------------------
Confidence 653221 111 15566777777777661111
Q ss_pred hhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCcc
Q 038430 542 EKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEF 620 (677)
Q Consensus 542 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~ 620 (677)
...+..+++|+.|++++|.+..++ .+..+++|++|++++| .+..++.+..++ |+.|++++|. ++.+....
T Consensus 236 ------~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 306 (347)
T 4fmz_A 236 ------LSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ-LGNEDMEV 306 (347)
T ss_dssp ------CGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCGGGHHH
T ss_pred ------CcchhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc-CCCcChhH
Confidence 011556788999999998887774 5778889999999888 666677788888 9999998853 44333222
Q ss_pred ccCCCCCCCCCCCCCCCcccCCCccceeeeccccc-CccccccCCccccCCCcccccC
Q 038430 621 LEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE-GNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~p~L~~L~i 677 (677)
...+++|+.|++++|+- ...+.. .+|+|++|++
T Consensus 307 ------------------l~~l~~L~~L~L~~n~l~~~~~~~------~l~~L~~L~l 340 (347)
T 4fmz_A 307 ------------------IGGLTNLTTLFLSQNHITDIRPLA------SLSKMDSADF 340 (347)
T ss_dssp ------------------HHTCTTCSEEECCSSSCCCCGGGG------GCTTCSEESS
T ss_pred ------------------hhccccCCEEEccCCccccccChh------hhhccceeeh
Confidence 25689999999999987 433322 6899999875
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-23 Score=212.75 Aligned_cols=248 Identities=20% Similarity=0.203 Sum_probs=206.9
Q ss_pred CceEEEEEEecCCC---cccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccc-ccchhhccCCC
Q 038430 303 GKVRHLGLKFKGGA---SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE-RLPKTLCELYN 378 (677)
Q Consensus 303 ~~l~~L~l~~~~~~---~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~l~~ 378 (677)
.+++.|+++++.+. .+|..+..+++|++|+++++ +.....+|..++.+++|++|++++|.++ .+|..+.++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~---n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI---NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEE---TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCC---CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 68999999999996 58899999999999999830 3334578888999999999999999998 88999999999
Q ss_pred cCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCC-CCCccCceeeCCCcCCCCcccccccccCCcCC
Q 038430 379 LQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLT-SLRTLDKFAVGGGVDGGSTCRLECLKNFQLIR 457 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~ 457 (677)
|++|++++|.....+|..++.+++|++|++++|...+.+|..++.+. +|++|++.++... ......+..+. |+
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~-----~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-----GKIPPTFANLN-LA 200 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-----EECCGGGGGCC-CS
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee-----ccCChHHhCCc-cc
Confidence 99999999994458999999999999999999976668999999998 9999999887765 33456677776 99
Q ss_pred cccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhh
Q 038430 458 KCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEER 537 (677)
Q Consensus 458 ~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (677)
.|.+++.. +.......+..+++|+.|++++|....
T Consensus 201 ~L~Ls~N~----l~~~~~~~~~~l~~L~~L~L~~N~l~~----------------------------------------- 235 (313)
T 1ogq_A 201 FVDLSRNM----LEGDASVLFGSDKNTQKIHLAKNSLAF----------------------------------------- 235 (313)
T ss_dssp EEECCSSE----EEECCGGGCCTTSCCSEEECCSSEECC-----------------------------------------
T ss_pred EEECcCCc----ccCcCCHHHhcCCCCCEEECCCCceee-----------------------------------------
Confidence 99998742 333344567889999999999882211
Q ss_pred hcchhhHHHHhhhcCCCCCCcEEEEecCCCC-CCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccc
Q 038430 538 RRKNEKDEQLLEALQPPLNVEKLWILFNGGN-ILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSV 613 (677)
Q Consensus 538 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l 613 (677)
....+..+++|++|++++|.+. .+|.++..+++|++|++++|.....+|..+.++ |+.|++.+.+.+
T Consensus 236 ---------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 236 ---------DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ---------BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred ---------ecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 1223566789999999999998 789999999999999999996666899889999 999999986544
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=232.37 Aligned_cols=174 Identities=13% Similarity=0.047 Sum_probs=133.8
Q ss_pred CCceEEEEEEecCCCc------------------cccccc--CCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEe
Q 038430 302 GGKVRHLGLKFKGGAS------------------FPMSIH--GLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNL 361 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~------------------~p~~~~--~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~L 361 (677)
..+++.|++++|.+.. +|..+. ++++|++|++++ +.....+|..++++++|++|+|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~----N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN----CPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES----CTTCCSCCGGGGGCSSCCEEEC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC----CCCCccChHHHhCCCCCCEEEC
Confidence 5688999999998877 888877 899999999987 5566778888899999999999
Q ss_pred cCcc-ccc--cchhhccCC-------CcCEEEecCCCCccccCc--ccccccccceeecCccCCCcccCCcCCCCCCCCc
Q 038430 362 SELH-IER--LPKTLCELY-------NLQKLDIRGCRNLRELPT--GIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRT 429 (677)
Q Consensus 362 s~~~-i~~--lp~~i~~l~-------~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 429 (677)
++|. ++. +|..+++++ +|++|++++|. +..+|. .++++++|++|++++|. +..+| .++.+++|+.
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceE
Confidence 9997 774 787777665 99999999988 668888 89999999999999885 44888 7888899999
Q ss_pred cCceeeCCCcCCCCcccccccccCCc-CCcccccCccCCCChhHHHHhhccCC--cccCceEEEeec
Q 038430 430 LDKFAVGGGVDGGSTCRLECLKNFQL-IRKCGIEGLSNVSHLDEAERLELKNM--ENLLHLYLWFEV 493 (677)
Q Consensus 430 L~l~~~~~~~~~~~~~~~~~L~~l~~-L~~L~i~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~ 493 (677)
|++.++.... ....+..+++ |+.|.++++.- ..++ ..+..+ ++|+.|++++|.
T Consensus 600 L~Ls~N~l~~------lp~~l~~l~~~L~~L~Ls~N~L-~~lp----~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 600 LKLDYNQIEE------IPEDFCAFTDQVEGLGFSHNKL-KYIP----NIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp EECCSSCCSC------CCTTSCEECTTCCEEECCSSCC-CSCC----SCCCTTCSSCEEEEECCSSC
T ss_pred EECcCCcccc------chHHHhhccccCCEEECcCCCC-CcCc----hhhhccccCCCCEEECcCCc
Confidence 9888777653 3345777777 88888877532 1221 223333 347777777763
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-23 Score=239.93 Aligned_cols=272 Identities=21% Similarity=0.156 Sum_probs=148.6
Q ss_pred CCceEEEEEEecCCC-cccccccCC-CcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccc-ccchh-hccCC
Q 038430 302 GGKVRHLGLKFKGGA-SFPMSIHGL-NRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE-RLPKT-LCELY 377 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~-~~p~~~~~l-~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~-~lp~~-i~~l~ 377 (677)
..+++.|++.+|.+. .+|..+... ++|++|++++ +.....+|..++.+++|++|++++|.+. .+|.. +.+++
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~----n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~ 343 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG----NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCS----SEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcC----CcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCC
Confidence 456777777777664 566555553 7777777775 3333355666777777777777777766 66655 67777
Q ss_pred CcCEEEecCCCCccccCccccccc-ccceeecCccCCCcccCCcCCC--CCCCCccCceeeCCCcCCCCcccccccccCC
Q 038430 378 NLQKLDIRGCRNLRELPTGIGKLK-NMRSLLNGLTCSLKYMPIGISK--LTSLRTLDKFAVGGGVDGGSTCRLECLKNFQ 454 (677)
Q Consensus 378 ~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~l~~~~~~~~~p~~i~~--l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~ 454 (677)
+|++|++++|.....+|..+..++ +|++|++++|...+.+|..+.. +++|++|++.++... ......+.+++
T Consensus 344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~p~~l~~l~ 418 (768)
T 3rgz_A 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT-----GKIPPTLSNCS 418 (768)
T ss_dssp TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE-----EECCGGGGGCT
T ss_pred CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc-----cccCHHHhcCC
Confidence 777777777764446666666665 6666666666544445555444 555555555554433 22334445555
Q ss_pred cCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchh
Q 038430 455 LIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEY 534 (677)
Q Consensus 455 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (677)
+|+.|.++++. +....+..+..+++|+.|+++.|......|.... + .....+
T Consensus 419 ~L~~L~Ls~N~----l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--------~----------------l~~L~~ 470 (768)
T 3rgz_A 419 ELVSLHLSFNY----LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM--------Y----------------VKTLET 470 (768)
T ss_dssp TCCEEECCSSE----EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--------G----------------CTTCCE
T ss_pred CCCEEECcCCc----ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc--------C----------------CCCceE
Confidence 55555555421 1111222344445555555554421111110000 0 000000
Q ss_pred hhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCC-CCChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccc
Q 038430 535 EERRRKNEKDEQLLEALQPPLNVEKLWILFNGGN-ILPKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLK 611 (677)
Q Consensus 535 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~ 611 (677)
.... .+.....++..+..+++|+.|++++|.+. .+|.+++.+++|++|++++|.....+|. ++.++ |+.|++++|+
T Consensus 471 L~L~-~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 471 LILD-FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp EECC-SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EEec-CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 0000 00000112334455677777777777776 5677777777777777777744445554 66677 7777777654
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=217.94 Aligned_cols=135 Identities=19% Similarity=0.169 Sum_probs=110.7
Q ss_pred CCCceEEEEEEecCCCcc-cccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCcccccc-chhhccCC
Q 038430 301 FGGKVRHLGLKFKGGASF-PMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERL-PKTLCELY 377 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~ 377 (677)
.+.++++|++++|.+..+ |..+..+++|++|++++ +.....+ |..+.++++|++|++++|.++.+ |..+++++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~----n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQ----QTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCC----CSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcC----CcccceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 578999999999999876 67899999999999997 3333344 45689999999999999999865 67899999
Q ss_pred CcCEEEecCCCCccccCcc--cccccccceeecCccCCCcccCCc-CCCCCCCCccCceeeCCCc
Q 038430 378 NLQKLDIRGCRNLRELPTG--IGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGGGV 439 (677)
Q Consensus 378 ~L~~L~L~~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~ 439 (677)
+|++|++++|.....+|.. ++.+++|++|++++|......|.. ++++++|++|++.++....
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 9999999999844445554 889999999999999655444665 7899999999998877653
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-22 Score=207.13 Aligned_cols=275 Identities=18% Similarity=0.212 Sum_probs=219.8
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+++.|++.++.+..++ .+..+++|++|++++ +.+..+|. +..+++|++|++++|.++.+| .+.++++|++
T Consensus 43 l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~-----n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNG-----NQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCS-----SCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred cccccEEEEeCCccccch-hhhhcCCccEEEccC-----Cccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 568899999999998887 488899999999996 45566665 899999999999999999885 6999999999
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++++|. +..+|. +..+++|++|++++|.....++ .+..+++|++|++.++.... ...+..+++|+.|.+
T Consensus 115 L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-------~~~~~~l~~L~~L~l 184 (347)
T 4fmz_A 115 LYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-------VTPIANLTDLYSLSL 184 (347)
T ss_dssp EECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-------CGGGGGCTTCSEEEC
T ss_pred EECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-------chhhccCCCCCEEEc
Confidence 9999998 778877 9999999999999997666554 48999999999998877553 333788899999999
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcch
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKN 541 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (677)
+++.- .... .+..+++|+.|++++|....
T Consensus 185 ~~n~l-~~~~-----~~~~l~~L~~L~l~~n~l~~--------------------------------------------- 213 (347)
T 4fmz_A 185 NYNQI-EDIS-----PLASLTSLHYFTAYVNQITD--------------------------------------------- 213 (347)
T ss_dssp TTSCC-CCCG-----GGGGCTTCCEEECCSSCCCC---------------------------------------------
T ss_pred cCCcc-cccc-----cccCCCccceeecccCCCCC---------------------------------------------
Confidence 87542 2221 16778999999998872211
Q ss_pred hhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCcc
Q 038430 542 EKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEF 620 (677)
Q Consensus 542 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~ 620 (677)
...+..+++|++|++++|.+..+|. +..+++|++|++++| .+..++.+..++ |+.|++++| .++.++ .
T Consensus 214 ------~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~--~ 282 (347)
T 4fmz_A 214 ------ITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDIS--V 282 (347)
T ss_dssp ------CGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCG--G
T ss_pred ------CchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCCh--h
Confidence 0114567899999999999998886 889999999999999 677788889999 999999985 455542 1
Q ss_pred ccCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 621 LEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
...+++|+.|++++|.-..... +.+..+|+|++|++
T Consensus 283 ------------------~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 283 ------------------LNNLSQLNSLFLNNNQLGNEDM---EVIGGLTNLTTLFL 318 (347)
T ss_dssp ------------------GGGCTTCSEEECCSSCCCGGGH---HHHHTCTTCSEEEC
T ss_pred ------------------hcCCCCCCEEECcCCcCCCcCh---hHhhccccCCEEEc
Confidence 3678999999999997622221 22236899998875
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-22 Score=223.71 Aligned_cols=246 Identities=20% Similarity=0.278 Sum_probs=183.0
Q ss_pred CeEEecCCCCHHHHHHH---HHHHhcCC----CCCCchHHHHHHHHHHHcCC--ccEEEEEECCcCCCccchhhhhhhhc
Q 038430 1 MWVCVSDTFEEISVANA---IIEGLGES----TSSLSEFQSLMSHIHRSIEG--KKNFLILNDVWDGDYNKWAPFFLCLN 71 (677)
Q Consensus 1 ~WV~vs~~~~~~~i~~~---i~~~l~~~----~~~~~~~~~~~~~i~~~L~~--kr~LlVlDdvw~~~~~~~~~l~~~~~ 71 (677)
+||+++.. +...++.. ++..++.. .....+.+.....+++.+.+ +++||||||||+. ..+.
T Consensus 183 ~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~------- 252 (591)
T 1z6t_A 183 HWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK------- 252 (591)
T ss_dssp EEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH-------
T ss_pred EEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH-------
Confidence 59999876 33344444 34555531 12345677788888888876 7999999999874 2222
Q ss_pred CCCCCcEEEEEcCchHHHHhcCCCCeEec---CCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHH
Q 038430 72 HGLHGSKILVTTRNELVARMMGSTNIIFI---EQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKV 148 (677)
Q Consensus 72 ~~~~gS~IiiTTR~~~v~~~~~~~~~~~v---~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 148 (677)
....|++||||||+..++..+. ...+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+.
T Consensus 253 ~l~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~ 326 (591)
T 1z6t_A 253 AFDSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSL 326 (591)
T ss_dssp TTCSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHH
T ss_pred HhcCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHH
Confidence 2256899999999999877654 345666 4899999999999988642 123356789999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHhhhhhhhh--------hcCCCccceeecccccCCCchhhhHHHhhhccCCCCceecHHHHHH
Q 038430 149 IGNLLRSKSTIKDWQRILDSEMWKAE--------EIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELIS 220 (677)
Q Consensus 149 ig~~L~~~~~~~~w~~~l~~~~~~~~--------~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp~~~~i~~~~li~ 220 (677)
+|++|+.+. ..|+..++....... .....+..++..||+.|++ +.|.||.++|+||+++.++...+..
T Consensus 327 ~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~--~~~~~l~~la~f~~~~~i~~~~l~~ 402 (591)
T 1z6t_A 327 IGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE--DIKDYYTDLSILQKDVKVPTKVLCI 402 (591)
T ss_dssp HHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT--TTHHHHHHGGGCCTTCCEEHHHHHH
T ss_pred HHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH--HHHHHHHHccccCCCCccCHHHHHH
Confidence 999998873 368777654221110 0113467788999999999 8999999999999999999999999
Q ss_pred HHHHcCCcCcchhhhHHHhHHHHHHHHHHccCccccccCCCCCeeeEEeChhHHHHHHHH
Q 038430 221 LWMAQGYLNAEEYEEKEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFV 280 (677)
Q Consensus 221 ~wi~~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mhdli~d~~~~~ 280 (677)
.|..+ .+.+..+++.|++++++..... +....|.||+++++++...
T Consensus 403 l~~~~-----------~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 403 LWDME-----------TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHTCC-----------HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHH
T ss_pred HhccC-----------HHHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhh
Confidence 88643 1346778999999999985432 3345799999999999876
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-22 Score=229.40 Aligned_cols=312 Identities=11% Similarity=0.089 Sum_probs=187.1
Q ss_pred CCceEEEEEEecCC-CcccccccCCCcccEEEeCCCCCCCCCCc--cCCcccCCC------CCcCEEEecCccccccch-
Q 038430 302 GGKVRHLGLKFKGG-ASFPMSIHGLNRLRTLLIDDESPPNSSLD--KIPENVGKL------MHLKYLNLSELHIERLPK- 371 (677)
Q Consensus 302 ~~~l~~L~l~~~~~-~~~p~~~~~l~~L~~L~l~~~~l~~~~~~--~lp~~~~~l------~~L~~L~Ls~~~i~~lp~- 371 (677)
..+++.|++.+|.+ ..+|..+.++++|++|++++ +..+. .+|..++.+ ++|++|++++|.++.+|.
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~----n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~ 323 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC----NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT----CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC----CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCch
Confidence 56899999999985 56888999999999999997 33133 577777665 888888888888888888
Q ss_pred -hhccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCC-CCccCceeeCCCcCCCCcccccc
Q 038430 372 -TLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTS-LRTLDKFAVGGGVDGGSTCRLEC 449 (677)
Q Consensus 372 -~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~~ 449 (677)
.++++++|++|++++|...+.+| .++.+++|++|++++|. +..+|..++.+++ |++|++.++.....+ ..
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp------~~ 395 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIP------NI 395 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCC------SC
T ss_pred hhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccc------hh
Confidence 78888888888888888334888 78888888888888884 5578888888887 888888777655321 12
Q ss_pred cccC--CcCCcccccCccCCCChhHHHHhhcc-------CCcccCceEEEeecCCCCCcccc---cccccccCCCCCCCC
Q 038430 450 LKNF--QLIRKCGIEGLSNVSHLDEAERLELK-------NMENLLHLYLWFEVVDREDEDWE---DEEENEDEGGEDEDE 517 (677)
Q Consensus 450 L~~l--~~L~~L~i~~~~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 517 (677)
+..+ .+|+.|.+++..- ....+..+. .+.+|+.|++++|.....++.+. ...+..+..+- .
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l----~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N---~ 468 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEI----GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN---M 468 (636)
T ss_dssp CCTTCSSCEEEEECCSSCT----TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS---C
T ss_pred hhhcccCccCEEECcCCcC----CCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC---C
Confidence 2222 2455555544211 111111122 33344444444442221111000 00000000000 0
Q ss_pred CCCcccccCCccc-------cchhhhhhcchhhHHHHhhhcC--CCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeC-
Q 038430 518 DGGYKEEKGGKVV-------DGEYEERRRKNEKDEQLLEALQ--PPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVF- 587 (677)
Q Consensus 518 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~- 587 (677)
....+...+.... ............. .++..+. .+++|+.|+|++|.+..+|.++..+++|+.|+|++
T Consensus 469 l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT--KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp CSBCCSSSSEETTEECTTGGGCCEEECCSSCCC--BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSC
T ss_pred CCCcCHHHhccccccccccCCccEEECcCCcCC--ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCC
Confidence 0011111111000 1111111111111 3444554 67788888888888777887788888888888854
Q ss_pred -----CCCCCcCCC-CCCcc-cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeecccccC
Q 038430 588 -----CENCEQLPP-LGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEG 656 (677)
Q Consensus 588 -----c~~~~~l~~-l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 656 (677)
|.....+|. ++.++ |+.|+++++ .++.++. ..+++|+.|++++++-.
T Consensus 547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~---------------------~~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNE---------------------KITPNISVLDIKDNPNI 600 (636)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCS---------------------CCCTTCCEEECCSCTTC
T ss_pred cccccCcccccChHHHhcCCCCCEEECCCC-cCCccCH---------------------hHhCcCCEEECcCCCCc
Confidence 333455663 67778 888888774 3455432 23489999999999763
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=199.77 Aligned_cols=83 Identities=22% Similarity=0.219 Sum_probs=55.5
Q ss_pred cCCCCCCcEEEEecCCCC-CCChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccceEeCCccccCCCCC
Q 038430 551 LQPPLNVEKLWILFNGGN-ILPKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVKRVGNEFLEIEESE 627 (677)
Q Consensus 551 l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~ 627 (677)
+..+++|+.|++++|.+. .+|.+++.+++|++|+|++|.....+|. ++.++ |+.|+|++|+.+..++..+
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l------- 297 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI------- 297 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG-------
T ss_pred hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH-------
Confidence 344567777777776554 4677777777777777777766677764 67777 7777777766655554332
Q ss_pred CCCCCCCCCCcccCCCccceeeecc
Q 038430 628 DDPSSSSSSSSVTAFPKVKSLEIKE 652 (677)
Q Consensus 628 ~~~~~~~~~~~~~~~~~L~~L~l~~ 652 (677)
..+++|+.+.+..
T Consensus 298 ------------~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 298 ------------AQLPANCIILVPP 310 (328)
T ss_dssp ------------GGSCTTCEEECCG
T ss_pred ------------hhccCceEEeCCH
Confidence 4566666666653
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=201.67 Aligned_cols=219 Identities=24% Similarity=0.315 Sum_probs=172.2
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+++.|+++++.+..+|..+..+++|++|++++ +.+..+|..++.+++|++|++++|.++.+|..++++++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-----n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDA-----AGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEES-----SCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCC-----CCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCE
Confidence 5678899999999999998888899999999985 34457888899999999999999999999999999999999
Q ss_pred EEecCCCCccccCccccc---------ccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCccccccccc
Q 038430 382 LDIRGCRNLRELPTGIGK---------LKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKN 452 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~---------l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 452 (677)
|++++|..++.+|..++. +++|++|++++| .+..+|..++++++|++|++.++.... ....
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~------l~~~--- 224 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSA------LGPA--- 224 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCC------CCGG---
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCc------Cchh---
Confidence 999998878888887664 889999999988 455888888888888888887665432 1122
Q ss_pred CCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccc
Q 038430 453 FQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDG 532 (677)
Q Consensus 453 l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (677)
+..+++|+.|++++|....
T Consensus 225 -------------------------l~~l~~L~~L~Ls~n~~~~------------------------------------ 243 (328)
T 4fcg_A 225 -------------------------IHHLPKLEELDLRGCTALR------------------------------------ 243 (328)
T ss_dssp -------------------------GGGCTTCCEEECTTCTTCC------------------------------------
T ss_pred -------------------------hccCCCCCEEECcCCcchh------------------------------------
Confidence 3344555556655541111
Q ss_pred hhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCC-CCChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccc
Q 038430 533 EYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGN-ILPKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCH 609 (677)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~ 609 (677)
.++..+..+++|+.|+|++|.+. .+|.++..+++|++|+|++|...+.+|. +++++ |+.+.+..
T Consensus 244 -------------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 244 -------------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp -------------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred -------------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 12234556788899999887654 5788888999999999999988888886 88888 88888874
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-22 Score=232.62 Aligned_cols=92 Identities=18% Similarity=0.221 Sum_probs=74.0
Q ss_pred cCCCCCCcEEEEecCCCC-CCChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccceEeCCccccCCCCC
Q 038430 551 LQPPLNVEKLWILFNGGN-ILPKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVKRVGNEFLEIEESE 627 (677)
Q Consensus 551 l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~ 627 (677)
+..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.....+|. ++.++ |+.|+|+++. +
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~-l-------------- 692 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK-L-------------- 692 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-C--------------
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc-c--------------
Confidence 444578999999999987 6899999999999999999966667885 88999 9999999832 3
Q ss_pred CCCCCCCCCCcccCCCccceeeeccccc-Cccccc
Q 038430 628 DDPSSSSSSSSVTAFPKVKSLEIKELEE-GNYRIT 661 (677)
Q Consensus 628 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~ 661 (677)
+|.+|.....+++|+.|++++++- ..+|..
T Consensus 693 ----~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 693 ----DGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp ----EECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred ----cCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 344444557899999999999987 767654
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.1e-22 Score=209.92 Aligned_cols=296 Identities=14% Similarity=0.072 Sum_probs=186.1
Q ss_pred CCceEEEEEEecCCCccccc-ccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccch-hhccCCC
Q 038430 302 GGKVRHLGLKFKGGASFPMS-IHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLPK-TLCELYN 378 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~ 378 (677)
..+++.+++.++.+..+|.. +..+++|++|++++ +.+..++ ..++.+++|++|++++|.++.+|+ .++++++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~-----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND-----LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTT-----SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCC-----CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 46788999999998888854 67899999999985 3445554 468899999999999999987755 4889999
Q ss_pred cCEEEecCCCCccccCcc-cccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCC
Q 038430 379 LQKLDIRGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIR 457 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~ 457 (677)
|++|++++|. +..+|.. ++.+++|++|++++|......|..++.+++|++|++.++.... . .+..+++|+
T Consensus 119 L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~---~~~~l~~L~ 189 (390)
T 3o6n_A 119 LTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-----V---DLSLIPSLF 189 (390)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-----C---CGGGCTTCS
T ss_pred CCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-----c---ccccccccc
Confidence 9999999998 7788876 5889999999999995444445668899999999998876653 1 345566666
Q ss_pred cccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhh
Q 038430 458 KCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEER 537 (677)
Q Consensus 458 ~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (677)
.|.+++.. +. .+....+|+.|++++|.....+. .. ..........
T Consensus 190 ~L~l~~n~----l~-----~~~~~~~L~~L~l~~n~l~~~~~-------------~~---~~~L~~L~l~---------- 234 (390)
T 3o6n_A 190 HANVSYNL----LS-----TLAIPIAVEELDASHNSINVVRG-------------PV---NVELTILKLQ---------- 234 (390)
T ss_dssp EEECCSSC----CS-----EEECCSSCSEEECCSSCCCEEEC-------------CC---CSSCCEEECC----------
T ss_pred eeeccccc----cc-----ccCCCCcceEEECCCCeeeeccc-------------cc---cccccEEECC----------
Confidence 66665521 11 12233456666665541111000 00 0000000000
Q ss_pred hcchhhHHHHhhhcCCCCCCcEEEEecCCCCCC-ChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccce
Q 038430 538 RRKNEKDEQLLEALQPPLNVEKLWILFNGGNIL-PKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVK 614 (677)
Q Consensus 538 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~ 614 (677)
..... ....+..+++|+.|++++|.+..+ |..+..+++|++|++++| .+..+|. .+.+| |+.|+++++ .++
T Consensus 235 -~n~l~---~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~ 308 (390)
T 3o6n_A 235 -HNNLT---DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLL 308 (390)
T ss_dssp -SSCCC---CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCC
T ss_pred -CCCCc---ccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cce
Confidence 00000 012344556777777777776644 556667777777777776 4444444 44567 777777764 454
Q ss_pred EeCCccccCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 615 RVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 615 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
.++..+ ..+++|+.|++++++-..++.. .+++|++|++
T Consensus 309 ~~~~~~-------------------~~l~~L~~L~L~~N~i~~~~~~------~~~~L~~L~l 346 (390)
T 3o6n_A 309 HVERNQ-------------------PQFDRLENLYLDHNSIVTLKLS------THHTLKNLTL 346 (390)
T ss_dssp CCGGGH-------------------HHHTTCSEEECCSSCCCCCCCC------TTCCCSEEEC
T ss_pred ecCccc-------------------cccCcCCEEECCCCccceeCch------hhccCCEEEc
Confidence 443221 3466677777766654333322 4666666654
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.4e-23 Score=234.89 Aligned_cols=179 Identities=17% Similarity=0.190 Sum_probs=144.4
Q ss_pred CCceEEEEEEecCCC-cccccccCCCcccEEEe-CCCCCC----------------------------------------
Q 038430 302 GGKVRHLGLKFKGGA-SFPMSIHGLNRLRTLLI-DDESPP---------------------------------------- 339 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~-~~p~~~~~l~~L~~L~l-~~~~l~---------------------------------------- 339 (677)
..++..|+++++.+. .+|..+..+++|++|++ ++|.+.
T Consensus 322 ~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 468999999999884 68899999999999999 554210
Q ss_pred --------------------------------CCCCccCCcccCCCCCcCEEEecCccccc------------------c
Q 038430 340 --------------------------------NSSLDKIPENVGKLMHLKYLNLSELHIER------------------L 369 (677)
Q Consensus 340 --------------------------------~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~------------------l 369 (677)
++.+..+|..++++++|++|+|++|.++. +
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 01222288889999999999999999987 9
Q ss_pred chhhc--cCCCcCEEEecCCCCccccCcccccccccceeecCccC-CCc-ccCCcCCCCC-------CCCccCceeeCCC
Q 038430 370 PKTLC--ELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTC-SLK-YMPIGISKLT-------SLRTLDKFAVGGG 438 (677)
Q Consensus 370 p~~i~--~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~-~~~-~~p~~i~~l~-------~L~~L~l~~~~~~ 438 (677)
|..++ ++++|++|+|++|.....+|..+++|++|++|++++|. ..+ .+|..++++. +|+.|++.++...
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 99987 99999999999999889999999999999999999996 444 5887666655 9999999888765
Q ss_pred cCCCCccccc--ccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 439 VDGGSTCRLE--CLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 439 ~~~~~~~~~~--~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
. .+. .+.++++|+.|.+++..-. .++ .+..+++|+.|++++|
T Consensus 562 ~------ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-----~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 562 E------FPASASLQKMVKLGLLDCVHNKVR-HLE-----AFGTNVKLTDLKLDYN 605 (876)
T ss_dssp B------CCCHHHHTTCTTCCEEECTTSCCC-BCC-----CCCTTSEESEEECCSS
T ss_pred c------cCChhhhhcCCCCCEEECCCCCcc-cch-----hhcCCCcceEEECcCC
Confidence 3 333 6888999999999875322 222 5788899999999988
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=219.70 Aligned_cols=343 Identities=17% Similarity=0.124 Sum_probs=197.1
Q ss_pred cCCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCcccccc-chhhccC
Q 038430 300 AFGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERL-PKTLCEL 376 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l 376 (677)
.++.+++.|+++++.+..++ ..|.++++|++|++++ +.+..+ |..|+++++|++|++++|.++.+ |..++++
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-----n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSR-----CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-----CCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCC-----CcccccCHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence 35688999999999998876 4889999999999996 334444 56689999999999999999876 6779999
Q ss_pred CCcCEEEecCCCCccccC-cccccccccceeecCccCCCc-ccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCC
Q 038430 377 YNLQKLDIRGCRNLRELP-TGIGKLKNMRSLLNGLTCSLK-YMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQ 454 (677)
Q Consensus 377 ~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~ 454 (677)
++|++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|++|++.++.... .....+..+.
T Consensus 104 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~ 177 (606)
T 3vq2_A 104 TSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-----ITVNDLQFLR 177 (606)
T ss_dssp TTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE-----ECTTTTHHHH
T ss_pred ccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee-----cChhhhhhhh
Confidence 999999999998 66555 679999999999999996443 578889999999999998876653 2222233333
Q ss_pred cCC----cccccCccCC-------------------CCh-hHHHHhhccCCcccCceEEEeecCCCCCcccccccccccC
Q 038430 455 LIR----KCGIEGLSNV-------------------SHL-DEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDE 510 (677)
Q Consensus 455 ~L~----~L~i~~~~~~-------------------~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 510 (677)
+|+ .|.+++..-. +.. .......+.++++|+.+.+........ ...
T Consensus 178 ~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~----------~~l 247 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE----------RNL 247 (606)
T ss_dssp HCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS----------CCC
T ss_pred ccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccC----------Ccc
Confidence 222 3444432110 000 112222333444444444433210000 000
Q ss_pred CCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCC
Q 038430 511 GGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCEN 590 (677)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~ 590 (677)
...+.....+..... .........+....... .+..+++|+.|+++++.+..+| ++..+++|++|++++|.
T Consensus 248 ~~~~~~~~~~l~~l~------l~~l~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~- 318 (606)
T 3vq2_A 248 EIFEPSIMEGLCDVT------IDEFRLTYTNDFSDDIV-KFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQ- 318 (606)
T ss_dssp SCCCGGGGTTGGGSE------EEEEEECCCTTCCGGGG-SCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCC-
T ss_pred cccChHHhhhhhhcc------Hhheecccccccccccc-ccccCCCCCEEEecCccchhhh-hccccccCCEEEccccc-
Confidence 000000000000000 00000000000111111 2555677888888888777777 66777788888888774
Q ss_pred CCcCCCCCCcc-cceeeccccccceEeCCccc---cCCCCCCCCCCCC--CCCcccCCCccceeeecccccCccccccCC
Q 038430 591 CEQLPPLGKLP-LEKLELCHLKSVKRVGNEFL---EIEESEDDPSSSS--SSSSVTAFPKVKSLEIKELEEGNYRITRKE 664 (677)
Q Consensus 591 ~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 664 (677)
++.+|.+ .++ |+.|+++++..+..+....+ ..-...++.+++. .+.....+++|++|++++|.-..++ .
T Consensus 319 l~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~----~ 393 (606)
T 3vq2_A 319 LKQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS----A 393 (606)
T ss_dssp CSSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC----C
T ss_pred CcccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch----h
Confidence 3777766 777 77777777644443311000 0000001111111 1223345667777777766542222 2
Q ss_pred ccccCCCcccccC
Q 038430 665 NISIIPRLSSLRI 677 (677)
Q Consensus 665 ~~~~~p~L~~L~i 677 (677)
.+..+++|++|++
T Consensus 394 ~~~~l~~L~~L~l 406 (606)
T 3vq2_A 394 NFMGLEELQHLDF 406 (606)
T ss_dssp CCTTCTTCCEEEC
T ss_pred hccCCCCCCeeEC
Confidence 2335777777754
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-21 Score=216.83 Aligned_cols=153 Identities=14% Similarity=0.047 Sum_probs=118.9
Q ss_pred cCCCceEEEEEEecCCCcc-cccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccccc-chhhccCC
Q 038430 300 AFGGKVRHLGLKFKGGASF-PMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERL-PKTLCELY 377 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~ 377 (677)
.++..++.|++++|.+..+ |..|.++++|++|++++ +......|..|+++++|++|++++|.++.+ |..+++++
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~----n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTR----CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTT----CCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEECCC----CccceeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 4577899999999999887 57899999999999996 333334467789999999999999998865 66799999
Q ss_pred CcCEEEecCCCCcccc-CcccccccccceeecCccCCCccc-CCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCc
Q 038430 378 NLQKLDIRGCRNLREL-PTGIGKLKNMRSLLNGLTCSLKYM-PIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQL 455 (677)
Q Consensus 378 ~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~ 455 (677)
+|++|++++|. +..+ |..++++++|++|++++|. +..+ ++.+..+++|++|++.++... ......++.+.+
T Consensus 106 ~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~ 178 (606)
T 3t6q_A 106 ALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIH-----YLSKEDMSSLQQ 178 (606)
T ss_dssp TCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCC-----EECHHHHHTTTT
T ss_pred cccEeeccccC-cccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCccc-----ccChhhhhhhcc
Confidence 99999999998 6665 5678999999999999995 4443 234445899999999887665 333455666666
Q ss_pred CC--cccccC
Q 038430 456 IR--KCGIEG 463 (677)
Q Consensus 456 L~--~L~i~~ 463 (677)
|+ .|.+.+
T Consensus 179 L~~l~L~l~~ 188 (606)
T 3t6q_A 179 ATNLSLNLNG 188 (606)
T ss_dssp CCSEEEECTT
T ss_pred cceeEEecCC
Confidence 66 455554
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.2e-21 Score=207.83 Aligned_cols=282 Identities=17% Similarity=0.187 Sum_probs=218.0
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCcccccc-chhhccCCCcCEEEe
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERL-PKTLCELYNLQKLDI 384 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~L 384 (677)
.+..++..+..+|..+. ++++.|++++ +.+..+ |..|..+++|++|+|++|.++.+ |..++++++|++|+|
T Consensus 15 ~v~c~~~~l~~ip~~~~--~~l~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIP--TETRLLDLGK-----NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCS-----SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEECCC-----CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEEC
Confidence 56667777888886553 6899999996 344555 56789999999999999999966 678999999999999
Q ss_pred cCCCCccccCcc-cccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 385 RGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 385 ~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
++|. +..+|.. +.++++|++|++++|......|..+..+++|++|++.++... ......+..+.+|+.|.+.+
T Consensus 88 ~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 88 RSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-----YISHRAFSGLNSLEQLTLEK 161 (477)
T ss_dssp CSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-----EECTTSSTTCTTCCEEEEES
T ss_pred CCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-----eeChhhccCCCCCCEEECCC
Confidence 9998 7788764 789999999999999766566778999999999999887765 33455678889999999988
Q ss_pred ccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhh
Q 038430 464 LSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEK 543 (677)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (677)
.. +.......+..+++|+.|+++.|....
T Consensus 162 n~----l~~~~~~~l~~l~~L~~L~l~~n~i~~----------------------------------------------- 190 (477)
T 2id5_A 162 CN----LTSIPTEALSHLHGLIVLRLRHLNINA----------------------------------------------- 190 (477)
T ss_dssp CC----CSSCCHHHHTTCTTCCEEEEESCCCCE-----------------------------------------------
T ss_pred Cc----CcccChhHhcccCCCcEEeCCCCcCcE-----------------------------------------------
Confidence 53 222233457788999999999872211
Q ss_pred HHHHhhhcCCCCCCcEEEEecCCCC-CCChhHhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccccccceEeCCc
Q 038430 544 DEQLLEALQPPLNVEKLWILFNGGN-ILPKWLTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHLKSVKRVGNE 619 (677)
Q Consensus 544 ~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~~~l~~i~~~ 619 (677)
.....+..+++|+.|++++|... .+|.......+|++|++++| .+..+|. ++.++ |+.|++++ +.++.++..
T Consensus 191 --~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~ 266 (477)
T 2id5_A 191 --IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSY-NPISTIEGS 266 (477)
T ss_dssp --ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCS-SCCCEECTT
T ss_pred --eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCC-CcCCccChh
Confidence 01134567789999999998754 56766667779999999999 6777873 78999 99999998 457777554
Q ss_pred cccCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 620 FLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
.+ ..+++|++|.++++.-..+.. ..+..+++|++|+|
T Consensus 267 ~~------------------~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L 303 (477)
T 2id5_A 267 ML------------------HELLRLQEIQLVGGQLAVVEP---YAFRGLNYLRVLNV 303 (477)
T ss_dssp SC------------------TTCTTCCEEECCSSCCSEECT---TTBTTCTTCCEEEC
T ss_pred hc------------------cccccCCEEECCCCccceECH---HHhcCcccCCEEEC
Confidence 43 578999999999986533321 23346889988875
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=205.48 Aligned_cols=293 Identities=16% Similarity=0.194 Sum_probs=151.8
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+++.|++++|.+..+|. +..+++|++|++++ +.+..++. ++.+++|++|++++|.++.+|+ +.++++|++
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~-----n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 138 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNN-----NQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNR 138 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-----SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCC-----CccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCE
Confidence 4566666666666666554 66666666666663 23333433 5666666666666666665554 666666666
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++++|. +..+|. ++.+++|++|+++++ ...++. ++++++|+.|++.++.... +..+..+++|+.|.+
T Consensus 139 L~l~~n~-l~~~~~-~~~l~~L~~L~l~~~--~~~~~~-~~~l~~L~~L~l~~n~l~~-------~~~l~~l~~L~~L~l 206 (466)
T 1o6v_A 139 LELSSNT-ISDISA-LSGLTSLQQLSFGNQ--VTDLKP-LANLTTLERLDISSNKVSD-------ISVLAKLTNLESLIA 206 (466)
T ss_dssp EEEEEEE-ECCCGG-GTTCTTCSEEEEEES--CCCCGG-GTTCTTCCEEECCSSCCCC-------CGGGGGCTTCSEEEC
T ss_pred EECCCCc-cCCChh-hccCCcccEeecCCc--ccCchh-hccCCCCCEEECcCCcCCC-------ChhhccCCCCCEEEe
Confidence 6666665 444443 555556665555432 222222 5555566666555554331 233455555555555
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcch
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKN 541 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (677)
+++.-.... .+..+++|+.|++++|..... + .+ ...............
T Consensus 207 ~~n~l~~~~------~~~~l~~L~~L~l~~n~l~~~-~--------------------~l-----~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 207 TNNQISDIT------PLGILTNLDELSLNGNQLKDI-G--------------------TL-----ASLTNLTDLDLANNQ 254 (466)
T ss_dssp CSSCCCCCG------GGGGCTTCCEEECCSSCCCCC-G--------------------GG-----GGCTTCSEEECCSSC
T ss_pred cCCcccccc------cccccCCCCEEECCCCCcccc-h--------------------hh-----hcCCCCCEEECCCCc
Confidence 543211110 133455555555555411100 0 00 000000000000000
Q ss_pred hhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCcc
Q 038430 542 EKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEF 620 (677)
Q Consensus 542 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~ 620 (677)
.. ....+..+++|+.|++++|.+..+|. +..+++|+.|++++| .+..++.++.++ |+.|++++| .++.+..
T Consensus 255 l~---~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~-- 326 (466)
T 1o6v_A 255 IS---NLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN-NISDISP-- 326 (466)
T ss_dssp CC---CCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS-CCSCCGG--
T ss_pred cc---cchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCC-cCCCchh--
Confidence 00 00114445666666666666666554 556666777777666 455555566666 777777664 2333211
Q ss_pred ccCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 621 LEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
...+++|++|++++|.-...+ .+..+++|++|++
T Consensus 327 ------------------~~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l 360 (466)
T 1o6v_A 327 ------------------VSSLTKLQRLFFYNNKVSDVS-----SLANLTNINWLSA 360 (466)
T ss_dssp ------------------GGGCTTCCEEECCSSCCCCCG-----GGTTCTTCCEEEC
T ss_pred ------------------hccCccCCEeECCCCccCCch-----hhccCCCCCEEeC
Confidence 357889999999888653332 2236888888764
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=210.40 Aligned_cols=178 Identities=20% Similarity=0.233 Sum_probs=145.1
Q ss_pred CCCceEEEEEEecCCCcc-cccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchh-hccCC
Q 038430 301 FGGKVRHLGLKFKGGASF-PMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKT-LCELY 377 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~ 377 (677)
++..++.|++++|.+..+ |..+..+++|++|++++ +.+..+ |..++.+++|++|++++|.++.+|+. +++++
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS-----SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTT-----SCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCC-----CCcCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 457899999999999876 47899999999999996 334444 46789999999999999999988765 99999
Q ss_pred CcCEEEecCCCCcc--ccCcccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeCCCcCCCCcccccccccCC
Q 038430 378 NLQKLDIRGCRNLR--ELPTGIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQ 454 (677)
Q Consensus 378 ~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~ 454 (677)
+|++|++++|. +. ..|..++++++|++|++++|...+.+| ..++++++|++|++.++... ......++.++
T Consensus 99 ~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~ 172 (549)
T 2z81_A 99 SLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-----NYQSQSLKSIR 172 (549)
T ss_dssp TCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-----EECTTTTTTCS
T ss_pred CCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc-----ccChhhhhccc
Confidence 99999999998 55 456789999999999999997677777 57999999999999988765 34566788888
Q ss_pred cCCcccccCccCCCChhHHHHhhccCCcccCceEEEeec
Q 038430 455 LIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEV 493 (677)
Q Consensus 455 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 493 (677)
+|+.|.+..... ... ....+..+++|+.|+++.|.
T Consensus 173 ~L~~L~l~~n~~-~~~---~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 173 DIHHLTLHLSES-AFL---LEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEEEEEECSBS-TTH---HHHHHHSTTTBSEEEEESCB
T ss_pred cCceEecccCcc-ccc---chhhHhhcccccEEEccCCc
Confidence 999998887542 222 22234568899999999883
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-20 Score=193.66 Aligned_cols=288 Identities=17% Similarity=0.158 Sum_probs=197.7
Q ss_pred ceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCcccccc-chhhccCCCcCE
Q 038430 304 KVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERL-PKTLCELYNLQK 381 (677)
Q Consensus 304 ~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~ 381 (677)
+++.+++.++.+..+|..+. ++|++|++++ +.+..+ |..++.+++|++|++++|.++.+ |..++++++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~-----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQN-----NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCS-----SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCC-----CcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 46677888888888886553 6788888885 334444 44678888888888888888865 667888888888
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCC-cCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCG 460 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 460 (677)
|++++|. +..+|..+. ++|++|++++|. +..+|. .++++++|++|++.++..... ......+..+ +|+.|.
T Consensus 107 L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 107 LYISKNH-LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENS---GFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp EECCSSC-CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGG---GSCTTSSCSC-CCSCCB
T ss_pred EECCCCc-CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccC---CCCcccccCC-ccCEEE
Confidence 8888887 778887665 788888888884 455554 478888888888887765420 1233445555 677777
Q ss_pred ccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcc
Q 038430 461 IEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRK 540 (677)
Q Consensus 461 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (677)
+++..- ..++. .+ .++|+.|++++|....
T Consensus 179 l~~n~l-~~l~~----~~--~~~L~~L~l~~n~i~~-------------------------------------------- 207 (332)
T 2ft3_A 179 ISEAKL-TGIPK----DL--PETLNELHLDHNKIQA-------------------------------------------- 207 (332)
T ss_dssp CCSSBC-SSCCS----SS--CSSCSCCBCCSSCCCC--------------------------------------------
T ss_pred CcCCCC-CccCc----cc--cCCCCEEECCCCcCCc--------------------------------------------
Confidence 776432 11111 11 2688888888772211
Q ss_pred hhhHHHHhhhcCCCCCCcEEEEecCCCCCCCh-hHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccceEeC
Q 038430 541 NEKDEQLLEALQPPLNVEKLWILFNGGNILPK-WLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVKRVG 617 (677)
Q Consensus 541 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~~i~ 617 (677)
.....+..+++|+.|++++|.+..++. ++..+++|++|++++| .+..+|. ++.++ |+.|++++ +.++.++
T Consensus 208 -----~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~-N~l~~~~ 280 (332)
T 2ft3_A 208 -----IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHT-NNITKVG 280 (332)
T ss_dssp -----CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCS-SCCCBCC
T ss_pred -----cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCC-CCCCccC
Confidence 012345667889999999999887764 6889999999999988 6667775 88889 99999997 5677776
Q ss_pred CccccCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 618 NEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
...+.... + ...+++|+.|.+.+++...+... +..+..+++|+.|++
T Consensus 281 ~~~~~~~~----------~--~~~~~~l~~L~l~~N~~~~~~~~-~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 281 VNDFCPVG----------F--GVKRAYYNGISLFNNPVPYWEVQ-PATFRCVTDRLAIQF 327 (332)
T ss_dssp TTSSSCSS----------C--CSSSCCBSEEECCSSSSCGGGSC-GGGGTTBCCSTTEEC
T ss_pred hhHccccc----------c--ccccccccceEeecCcccccccC-cccccccchhhhhhc
Confidence 54432210 0 12368899999998876323222 133335677777654
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-20 Score=202.39 Aligned_cols=257 Identities=20% Similarity=0.210 Sum_probs=138.3
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+++.|+++++.+..++. +..+++|++|++++ +.+..+|. ++.+++|++|++++|.+..+|. ++++++|++
T Consensus 89 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~-----n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 160 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADITP-LANLTNLTGLTLFN-----NQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQ 160 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-----SCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSE
T ss_pred cccCCEEECCCCccccChh-hcCCCCCCEEECCC-----CCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccE
Confidence 5688888888888887775 88888899998885 34455544 7888888888888888777653 666666666
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++++ . +..++. ++++++|++|++++|. +..++ .+..+++|++|++.++.... ...+..+++|+.|.+
T Consensus 161 L~l~~-~-~~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~-------~~~~~~l~~L~~L~l 228 (466)
T 1o6v_A 161 LSFGN-Q-VTDLKP-LANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQISD-------ITPLGILTNLDELSL 228 (466)
T ss_dssp EEEEE-S-CCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCC-------CGGGGGCTTCCEEEC
T ss_pred eecCC-c-ccCchh-hccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCcccc-------cccccccCCCCEEEC
Confidence 66642 2 333333 5555666666666553 33332 24555555555555444332 111344445555555
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcch
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKN 541 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (677)
+++.- ... ..+..+++|+.|++++|......+ .++. ......... ...
T Consensus 229 ~~n~l-~~~-----~~l~~l~~L~~L~l~~n~l~~~~~----------~~~l-----~~L~~L~l~-----------~n~ 276 (466)
T 1o6v_A 229 NGNQL-KDI-----GTLASLTNLTDLDLANNQISNLAP----------LSGL-----TKLTELKLG-----------ANQ 276 (466)
T ss_dssp CSSCC-CCC-----GGGGGCTTCSEEECCSSCCCCCGG----------GTTC-----TTCSEEECC-----------SSC
T ss_pred CCCCc-ccc-----hhhhcCCCCCEEECCCCccccchh----------hhcC-----CCCCEEECC-----------CCc
Confidence 44321 111 123344455555554441111000 0000 000000000 000
Q ss_pred hhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEe
Q 038430 542 EKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRV 616 (677)
Q Consensus 542 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i 616 (677)
.. . ...+..+++|+.|++++|.+..+|. +..+++|+.|++++| .+..++.++.++ |+.|++++| .++.+
T Consensus 277 l~--~-~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~ 346 (466)
T 1o6v_A 277 IS--N-ISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNN-KVSDV 346 (466)
T ss_dssp CC--C-CGGGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSS-CCCCC
T ss_pred cC--c-cccccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCC-cCCCchhhccCccCCEeECCCC-ccCCc
Confidence 00 0 0114456677777777777666654 567777777777777 444445566677 777777764 34433
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=206.69 Aligned_cols=105 Identities=19% Similarity=0.190 Sum_probs=80.4
Q ss_pred CCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchhhccCCC
Q 038430 301 FGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKTLCELYN 378 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~ 378 (677)
++.++++|++++|.+..++ ..+..+++|++|++++ +.+..+ |..++++++|++|++++|.++.+|.. .+++
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 91 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISH-----NRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVN 91 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCS-----SCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCC
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCC-----CccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCC
Confidence 3578888888888887765 5788888888888885 334444 66788888888888888888888776 7888
Q ss_pred cCEEEecCCCCcc-ccCcccccccccceeecCccC
Q 038430 379 LQKLDIRGCRNLR-ELPTGIGKLKNMRSLLNGLTC 412 (677)
Q Consensus 379 L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~l~~~~ 412 (677)
|++|++++|.... .+|..++++++|++|++++|.
T Consensus 92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred ccEEeccCCccccccchhhhccCCcceEEEecCcc
Confidence 8888888887333 356778888888888888774
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-21 Score=217.10 Aligned_cols=260 Identities=14% Similarity=0.051 Sum_probs=158.2
Q ss_pred CCceEEEEEEecCCCcccc-cccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccchh-hccCCC
Q 038430 302 GGKVRHLGLKFKGGASFPM-SIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLPKT-LCELYN 378 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~ 378 (677)
...++.+++.++.+..+|. .+..+++|++|++++ +.+..+| ..++.+++|++|+|++|.++.+|+. ++++++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND-----LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTT-----SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCC-----CCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 3567788888888877774 367788899998885 3344444 4678888899999998888877654 688889
Q ss_pred cCEEEecCCCCccccCcc-cccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCC
Q 038430 379 LQKLDIRGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIR 457 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~ 457 (677)
|++|+|++|. +..+|.. ++.+++|++|++++|......|..++.+++|++|++.++.... . .+..+++|+
T Consensus 125 L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~---~~~~l~~L~ 195 (597)
T 3oja_B 125 LTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-----V---DLSLIPSLF 195 (597)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-----C---CGGGCTTCS
T ss_pred CCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-----c---Chhhhhhhh
Confidence 9999998887 7777765 4788889999998885544445568888888888888776553 1 244556666
Q ss_pred cccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhh
Q 038430 458 KCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEER 537 (677)
Q Consensus 458 ~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (677)
.|.+++.. +. .+....+|+.|++++|.......... ..... ...
T Consensus 196 ~L~l~~n~----l~-----~l~~~~~L~~L~ls~n~l~~~~~~~~----------------~~L~~-----------L~L 239 (597)
T 3oja_B 196 HANVSYNL----LS-----TLAIPIAVEELDASHNSINVVRGPVN----------------VELTI-----------LKL 239 (597)
T ss_dssp EEECCSSC----CS-----EEECCTTCSEEECCSSCCCEEECSCC----------------SCCCE-----------EEC
T ss_pred hhhcccCc----cc-----cccCCchhheeeccCCcccccccccC----------------CCCCE-----------EEC
Confidence 66665421 11 12334456666665551111000000 00000 000
Q ss_pred hcchhhHHHHhhhcCCCCCCcEEEEecCCCCCC-ChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccce
Q 038430 538 RRKNEKDEQLLEALQPPLNVEKLWILFNGGNIL-PKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVK 614 (677)
Q Consensus 538 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~ 614 (677)
...... ....+..+++|+.|+|++|.+..+ |..++.+++|+.|+|++| .+..+|. .+.+| |+.|+|++| .+.
T Consensus 240 ~~n~l~---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~ 314 (597)
T 3oja_B 240 QHNNLT---DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLL 314 (597)
T ss_dssp CSSCCC---CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCC
T ss_pred CCCCCC---CChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCC
Confidence 000000 012344456677777777666543 556666777777777666 4444444 34566 777777663 344
Q ss_pred Ee
Q 038430 615 RV 616 (677)
Q Consensus 615 ~i 616 (677)
.+
T Consensus 315 ~i 316 (597)
T 3oja_B 315 HV 316 (597)
T ss_dssp CC
T ss_pred cc
Confidence 44
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-20 Score=199.52 Aligned_cols=161 Identities=16% Similarity=0.120 Sum_probs=107.9
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+++.|+++++.+..+| .+..+++|++|++++| .+..+| ++.+++|++|++++|.++.+| ++++++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-----~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-----NITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-----CCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-----cCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 456778888888777776 6777788888888753 344444 677778888888888877764 777788888
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++++|. +..+| ++.+++|++|++++|. +..+| ++.+++|++|++..+.... .+ .+..+++|+.|.+
T Consensus 111 L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~------~~-~~~~l~~L~~L~l 177 (457)
T 3bz5_A 111 LNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKIT------KL-DVTPQTQLTTLDC 177 (457)
T ss_dssp EECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCC------CC-CCTTCTTCCEEEC
T ss_pred EECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccc------cc-ccccCCcCCEEEC
Confidence 8888776 66665 7777888888888774 44443 6677777777776664321 11 3556667777777
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
++..- ..+ .+..+++|+.|++++|
T Consensus 178 s~n~l-~~l------~l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 178 SFNKI-TEL------DVSQNKLLNRLNCDTN 201 (457)
T ss_dssp CSSCC-CCC------CCTTCTTCCEEECCSS
T ss_pred CCCcc-cee------ccccCCCCCEEECcCC
Confidence 66421 111 1556677777777766
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=194.48 Aligned_cols=289 Identities=15% Similarity=0.153 Sum_probs=195.5
Q ss_pred ceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCcccccc-chhhccCCCcCE
Q 038430 304 KVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERL-PKTLCELYNLQK 381 (677)
Q Consensus 304 ~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~ 381 (677)
+++.+++.++.+..+|..+. +++++|++++ +.+..+|. .++.+++|++|++++|.++.+ |..++++++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~-----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQN-----NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 104 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCS-----SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCC-----CcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence 45567777777777775543 5788888875 33445543 578888888888888888766 667888888888
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCG 460 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 460 (677)
|++++|. +..+|..+. ++|++|++++|. +..++ ..++++++|++|++.++..... ......+..+++|+.|.
T Consensus 105 L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 105 LYLSKNQ-LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSS---GIENGAFQGMKKLSYIR 177 (330)
T ss_dssp EECCSSC-CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGG---GBCTTGGGGCTTCCEEE
T ss_pred EECCCCc-CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCcc---CcChhhccCCCCcCEEE
Confidence 8888887 777777555 688888888884 44444 4477888888888877665420 23445667777888887
Q ss_pred ccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcc
Q 038430 461 IEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRK 540 (677)
Q Consensus 461 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (677)
+++..- ..++. .+ .++|+.|++++|....
T Consensus 178 l~~n~l-~~l~~----~~--~~~L~~L~l~~n~l~~-------------------------------------------- 206 (330)
T 1xku_A 178 IADTNI-TTIPQ----GL--PPSLTELHLDGNKITK-------------------------------------------- 206 (330)
T ss_dssp CCSSCC-CSCCS----SC--CTTCSEEECTTSCCCE--------------------------------------------
T ss_pred CCCCcc-ccCCc----cc--cccCCEEECCCCcCCc--------------------------------------------
Confidence 776432 11111 11 2788888888772111
Q ss_pred hhhHHHHhhhcCCCCCCcEEEEecCCCCCCCh-hHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccceEeC
Q 038430 541 NEKDEQLLEALQPPLNVEKLWILFNGGNILPK-WLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVKRVG 617 (677)
Q Consensus 541 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~~i~ 617 (677)
.....+..+++|+.|++++|.+..++. ++..+++|++|++++| .+..+|. +..++ |++|++++ +.++.++
T Consensus 207 -----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~-N~i~~~~ 279 (330)
T 1xku_A 207 -----VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN-NNISAIG 279 (330)
T ss_dssp -----ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS-SCCCCCC
T ss_pred -----cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCC-CcCCccC
Confidence 112345677899999999999887654 6889999999999999 6667775 88889 99999997 5577776
Q ss_pred CccccCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 618 NEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
...+... . ....+++|+.|.+.++|...|.... ..+..+++|+.+++
T Consensus 280 ~~~f~~~----------~--~~~~~~~l~~l~l~~N~~~~~~i~~-~~f~~~~~l~~l~L 326 (330)
T 1xku_A 280 SNDFCPP----------G--YNTKKASYSGVSLFSNPVQYWEIQP-STFRCVYVRAAVQL 326 (330)
T ss_dssp TTSSSCS----------S--CCTTSCCCSEEECCSSSSCGGGSCG-GGGTTCCCGGGEEC
T ss_pred hhhcCCc----------c--cccccccccceEeecCcccccccCc-cccccccceeEEEe
Confidence 5544221 0 0134688999999988864443321 23334566666653
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-20 Score=212.12 Aligned_cols=244 Identities=20% Similarity=0.193 Sum_probs=179.5
Q ss_pred ceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccccc-chhhccCCCcCE
Q 038430 304 KVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERL-PKTLCELYNLQK 381 (677)
Q Consensus 304 ~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~ 381 (677)
.++.+++.++.+..++ ..+..+++|++|++++ +.+..+|..++.+++|++|++++|.++.+ |..+.++++|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTA-----THLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTT-----SCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccC-----CccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 7899999999998876 4588999999999995 45668898899999999999999999866 557999999999
Q ss_pred EEecCCCCccccCcc-cccccccceeecCccCCCccc--CCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCc
Q 038430 382 LDIRGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYM--PIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRK 458 (677)
Q Consensus 382 L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~--p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~ 458 (677)
|++++|.....+|.. ++.+++|++|++++|...... |..++.+++|++|++.++... ......+..+++|+.
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-----SLKTEAFKECPQLEL 404 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-----EECTTTTTTCTTCSE
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC-----cCCHHHhcCCccCCe
Confidence 999999855577664 889999999999999544333 667899999999999887655 334566778888999
Q ss_pred ccccCccCCCChhHHH-HhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhh
Q 038430 459 CGIEGLSNVSHLDEAE-RLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEER 537 (677)
Q Consensus 459 L~i~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (677)
|.+++... .... ...+..+++|+.|++++|....
T Consensus 405 L~l~~n~l----~~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------------------------- 439 (606)
T 3t6q_A 405 LDLAFTRL----KVKDAQSPFQNLHLLKVLNLSHSLLDI----------------------------------------- 439 (606)
T ss_dssp EECTTCCE----ECCTTCCTTTTCTTCCEEECTTCCCBT-----------------------------------------
T ss_pred EECCCCcC----CCcccchhhhCcccCCEEECCCCccCC-----------------------------------------
Confidence 88877432 1111 1236778899999998772221
Q ss_pred hcchhhHHHHhhhcCCCCCCcEEEEecCCCCC----CChhHhhccCCCeEEEeCCCCCCcCC-CCCCcc-cceeecccc
Q 038430 538 RRKNEKDEQLLEALQPPLNVEKLWILFNGGNI----LPKWLTSLTNLSDLKLVFCENCEQLP-PLGKLP-LEKLELCHL 610 (677)
Q Consensus 538 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~----lp~~~~~l~~L~~L~l~~c~~~~~l~-~l~~l~-L~~L~l~~~ 610 (677)
.....+..+++|++|++++|.+.. .+.++..+++|++|++++|......| .++.++ |+.|+++++
T Consensus 440 --------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 440 --------SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp --------TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred --------cCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 112334556777777777776643 23456677777777777773333323 266777 777777764
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.3e-20 Score=189.03 Aligned_cols=264 Identities=18% Similarity=0.156 Sum_probs=198.1
Q ss_pred CCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchhhccCCC
Q 038430 301 FGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKTLCELYN 378 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~ 378 (677)
++..++.|++++|.+..++ ..+..+++|++|++++ +.+..+ |..++.+++|++|++++|.++.+|..+. ++
T Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~ 124 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN-----NKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SS 124 (332)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-----SCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TT
T ss_pred CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCC-----CccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--cc
Confidence 4678999999999998875 5899999999999996 334444 6779999999999999999999988765 89
Q ss_pred cCEEEecCCCCccccCc-ccccccccceeecCccCCC--cccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCc
Q 038430 379 LQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSL--KYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQL 455 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~--~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~ 455 (677)
|++|++++|. +..+|. .+..+++|++|++++|... ...|..+..+ +|+.|++.++.....+ ..+ .++
T Consensus 125 L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~------~~~--~~~ 194 (332)
T 2ft3_A 125 LVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP------KDL--PET 194 (332)
T ss_dssp CCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC------SSS--CSS
T ss_pred CCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC------ccc--cCC
Confidence 9999999998 777765 5899999999999999542 2456667777 9999999888765422 111 157
Q ss_pred CCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhh
Q 038430 456 IRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYE 535 (677)
Q Consensus 456 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (677)
|+.|.+++.. +.......+..+++|+.|++++|.....
T Consensus 195 L~~L~l~~n~----i~~~~~~~l~~l~~L~~L~L~~N~l~~~-------------------------------------- 232 (332)
T 2ft3_A 195 LNELHLDHNK----IQAIELEDLLRYSKLYRLGLGHNQIRMI-------------------------------------- 232 (332)
T ss_dssp CSCCBCCSSC----CCCCCTTSSTTCTTCSCCBCCSSCCCCC--------------------------------------
T ss_pred CCEEECCCCc----CCccCHHHhcCCCCCCEEECCCCcCCcC--------------------------------------
Confidence 8888887742 2222334577889999999998822221
Q ss_pred hhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCC--CCC------cc-cceee
Q 038430 536 ERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPP--LGK------LP-LEKLE 606 (677)
Q Consensus 536 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~--l~~------l~-L~~L~ 606 (677)
....+..+++|+.|++++|.+..+|.++..+++|++|++++| .+..++. +.. .+ |+.|+
T Consensus 233 -----------~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~ 300 (332)
T 2ft3_A 233 -----------ENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGIS 300 (332)
T ss_dssp -----------CTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEE
T ss_pred -----------ChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceE
Confidence 112345678999999999999999999999999999999998 5666653 222 46 89999
Q ss_pred ccccccce--EeCCccccCCCCCCCCCCCCCCCcccCCCccceeeecccc
Q 038430 607 LCHLKSVK--RVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELE 654 (677)
Q Consensus 607 l~~~~~l~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 654 (677)
+.+++ +. .+.... ...+++|+.|.++++.
T Consensus 301 l~~N~-~~~~~~~~~~------------------~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 301 LFNNP-VPYWEVQPAT------------------FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSS-SCGGGSCGGG------------------GTTBCCSTTEEC----
T ss_pred eecCc-ccccccCccc------------------ccccchhhhhhccccc
Confidence 99855 32 222211 3567888999888764
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-20 Score=201.50 Aligned_cols=146 Identities=14% Similarity=0.062 Sum_probs=115.2
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCcccc-cc-chhhccCCCcCEEE
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIE-RL-PKTLCELYNLQKLD 383 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~-~l-p~~i~~l~~L~~L~ 383 (677)
.+...++++..+|. + .++|++|++++ +.+..+ |..++++++|++|++++|.+. .+ |..+.++++|++|+
T Consensus 14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 14 NAICINRGLHQVPE-L--PAHVNYVDLSL-----NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp EEECCSSCCSSCCC-C--CTTCCEEECCS-----SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred ccCcCCCCcccCCC-C--CCccCEEEecC-----CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence 45666677788886 3 37899999996 334444 677999999999999999986 55 45699999999999
Q ss_pred ecCCCCccccCcccccccccceeecCccCCCcccCCc--CCCCCCCCccCceeeCCCcCCCCcccccc-cccCCcCCccc
Q 038430 384 IRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIG--ISKLTSLRTLDKFAVGGGVDGGSTCRLEC-LKNFQLIRKCG 460 (677)
Q Consensus 384 L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~--i~~l~~L~~L~l~~~~~~~~~~~~~~~~~-L~~l~~L~~L~ 460 (677)
+++|......|..++++++|++|++++|...+.+|.. ++.+++|++|++.++.... ..... +..+++|+.|+
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-----IQPASFFLNMRRFHVLD 160 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS-----CCCCGGGGGCTTCCEEE
T ss_pred CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc-----cCcccccCCCCcccEEe
Confidence 9999944455888999999999999999655445544 8999999999999887763 22233 78888999998
Q ss_pred ccCcc
Q 038430 461 IEGLS 465 (677)
Q Consensus 461 i~~~~ 465 (677)
+++..
T Consensus 161 L~~n~ 165 (455)
T 3v47_A 161 LTFNK 165 (455)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 88753
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-20 Score=199.45 Aligned_cols=263 Identities=14% Similarity=0.094 Sum_probs=184.6
Q ss_pred CCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchh-hccCCC
Q 038430 302 GGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKT-LCELYN 378 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~ 378 (677)
..+++.|++.++.+..++ ..+..+++|++|++++ +.+..+ |..++.+++|++|++++|.++.+|.. ++++++
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 142 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-----NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCC-----CCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCC
Confidence 467899999999888776 4788899999999986 334444 45578899999999999999988876 588999
Q ss_pred cCEEEecCCCCcccc-CcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccc--------
Q 038430 379 LQKLDIRGCRNLREL-PTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLEC-------- 449 (677)
Q Consensus 379 L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~-------- 449 (677)
|++|++++|. +..+ |..++.+++|++|++++|. +..++ ++.+++|+.|++..+..... .....
T Consensus 143 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~l~~ 214 (390)
T 3o6n_A 143 LTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLLSTL----AIPIAVEELDASH 214 (390)
T ss_dssp CCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GGGCTTCSEEECCSSCCSEE----ECCSSCSEEECCS
T ss_pred CcEEECCCCc-cCccChhhccCCCCCCEEECCCCc-CCccc--cccccccceeeccccccccc----CCCCcceEEECCC
Confidence 9999999988 5555 4568889999999999884 44443 45566666666554433210 00000
Q ss_pred -------cccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcc
Q 038430 450 -------LKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYK 522 (677)
Q Consensus 450 -------L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (677)
.....+|+.|.+.+..-. .. ..+..+++|+.|++++|....
T Consensus 215 n~l~~~~~~~~~~L~~L~l~~n~l~-~~-----~~l~~l~~L~~L~Ls~n~l~~-------------------------- 262 (390)
T 3o6n_A 215 NSINVVRGPVNVELTILKLQHNNLT-DT-----AWLLNYPGLVEVDLSYNELEK-------------------------- 262 (390)
T ss_dssp SCCCEEECCCCSSCCEEECCSSCCC-CC-----GGGGGCTTCSEEECCSSCCCE--------------------------
T ss_pred CeeeeccccccccccEEECCCCCCc-cc-----HHHcCCCCccEEECCCCcCCC--------------------------
Confidence 011235666666553221 11 345667778888887761111
Q ss_pred cccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc
Q 038430 523 EEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP 601 (677)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~ 601 (677)
..+..+..+++|+.|++++|.+..+|..+..+++|++|++++| .+..+|. ++.++
T Consensus 263 -----------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~ 318 (390)
T 3o6n_A 263 -----------------------IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFD 318 (390)
T ss_dssp -----------------------EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHT
T ss_pred -----------------------cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccC
Confidence 1234566778999999999998888877778899999999998 5656664 67788
Q ss_pred -cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeeccccc
Q 038430 602 -LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 602 -L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
|+.|+++++ .++.++ ...+++|+.|++++++-
T Consensus 319 ~L~~L~L~~N-~i~~~~---------------------~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 319 RLENLYLDHN-SIVTLK---------------------LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp TCSEEECCSS-CCCCCC---------------------CCTTCCCSEEECCSSCE
T ss_pred cCCEEECCCC-ccceeC---------------------chhhccCCEEEcCCCCc
Confidence 999999884 354442 25788999999988764
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-20 Score=216.86 Aligned_cols=321 Identities=15% Similarity=0.064 Sum_probs=199.4
Q ss_pred CCCceEEEEEEecCCCcc-cccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCcccccc-chhhccCC
Q 038430 301 FGGKVRHLGLKFKGGASF-PMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERL-PKTLCELY 377 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~ 377 (677)
.+.+++.|++++|.+..+ |..|.++++|++|++++ +.....+ |..|+++++|++|+|++|.+..+ |..+++++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~----n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGS----QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECT----TCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCC----CCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 688999999999999776 57899999999999997 4455666 67789999999999999999866 77899999
Q ss_pred CcCEEEecCCCCccccCcc--cccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeCCCcCCCCcccccccccC-
Q 038430 378 NLQKLDIRGCRNLRELPTG--IGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNF- 453 (677)
Q Consensus 378 ~L~~L~L~~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l- 453 (677)
+|++|+|++|.....+|.. ++++++|++|++++|......| ..++++++|++|++.++.... .....+..+
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~-----~~~~~l~~l~ 172 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL-----VCEHELEPLQ 172 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC-----CCSGGGHHHH
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe-----eCHHHccccc
Confidence 9999999999844556665 8999999999999996544333 468999999999999877652 234455555
Q ss_pred -CcCCcccccCccCCCChhHHHHhhccCCc------ccCceEEEeecCCCCCcccc-ccccccc-----CCC------CC
Q 038430 454 -QLIRKCGIEGLSNVSHLDEAERLELKNME------NLLHLYLWFEVVDREDEDWE-DEEENED-----EGG------ED 514 (677)
Q Consensus 454 -~~L~~L~i~~~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~-~~~~~~~-----~~~------~~ 514 (677)
.+|+.|.++...-... ....+..+. .|+.|+++.|......+.+. ....... ... ..
T Consensus 173 ~~~L~~L~L~~n~l~~~----~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSR----VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp HCSSCCCEECCSBSCCC----CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred CCccceEECCCCccccc----cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 6788888876432221 112233333 48999998773322211111 0000000 000 00
Q ss_pred CCCCCCcccccCCcc--ccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCC-ChhHhhccCCCeEEEeCCCCC
Q 038430 515 EDEDGGYKEEKGGKV--VDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNIL-PKWLTSLTNLSDLKLVFCENC 591 (677)
Q Consensus 515 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~~ 591 (677)
.....+......... ............ ........+..+++|+.|+|++|.+..+ |..+..+++|++|++++| .+
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~l 326 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LL 326 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC-CC
T ss_pred ccccCCCChhhhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC-CC
Confidence 000000000000000 000000000000 0011123345566777777777776654 445667777777777777 34
Q ss_pred CcC-C-CCCCcc-cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeeccccc
Q 038430 592 EQL-P-PLGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 592 ~~l-~-~l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
..+ | .++.++ |+.|+++++ .++.++... ...+++|+.|+++++.-
T Consensus 327 ~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~------------------~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 327 GELYSSNFYGLPKVAYIDLQKN-HIAIIQDQT------------------FKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp SCCCSCSCSSCTTCCEEECCSC-CCCCCCSSC------------------SCSCCCCCEEEEETCCS
T ss_pred CccCHHHhcCCCCCCEEECCCC-CCCccChhh------------------hcCCCCCCEEECCCCCC
Confidence 333 3 366777 777777763 454443332 35678888888887754
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-20 Score=207.75 Aligned_cols=311 Identities=16% Similarity=0.148 Sum_probs=190.7
Q ss_pred CCceEEEEEEecCCCcc-cccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccc-hhhccCCC
Q 038430 302 GGKVRHLGLKFKGGASF-PMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLP-KTLCELYN 378 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~l~~ 378 (677)
..++++|++++|.+..+ |..|.++++|++|++++ +.+..+ |..|+++++|++|++++|.++.+| ..++++++
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~-----n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG-----NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT-----CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCC-----CcccccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence 56788888888888776 46788888899999885 334444 677888888888888888888765 56888888
Q ss_pred cCEEEecCCCCcc-ccCcccccccccceeecCccCCCcccCCcCCCCCCCC----ccCceeeCCCcCCCC----------
Q 038430 379 LQKLDIRGCRNLR-ELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLR----TLDKFAVGGGVDGGS---------- 443 (677)
Q Consensus 379 L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~----~L~l~~~~~~~~~~~---------- 443 (677)
|++|++++|.... .+|..++++++|++|++++|......|..++.+++|+ +|++..+.....+..
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L 209 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL 209 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeee
Confidence 8888888887332 5788888888888888888854444445555555444 455544443321100
Q ss_pred ---------cccccccccCCcCCcccccC--cc---------------------------CCCChhHHHHhhccCCcccC
Q 038430 444 ---------TCRLECLKNFQLIRKCGIEG--LS---------------------------NVSHLDEAERLELKNMENLL 485 (677)
Q Consensus 444 ---------~~~~~~L~~l~~L~~L~i~~--~~---------------------------~~~~~~~~~~~~l~~~~~L~ 485 (677)
......+.++..|+.+.+.. .. ..+........ +..+++|+
T Consensus 210 ~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~ 288 (606)
T 3vq2_A 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVS 288 (606)
T ss_dssp EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCS
T ss_pred eccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCC
Confidence 00111122222222221110 00 00111111222 55667788
Q ss_pred ceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecC
Q 038430 486 HLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFN 565 (677)
Q Consensus 486 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 565 (677)
.|+++++.... ...+..+++|++|++++|
T Consensus 289 ~L~l~~~~~~~---------------------------------------------------l~~l~~~~~L~~L~l~~n 317 (606)
T 3vq2_A 289 AMSLAGVSIKY---------------------------------------------------LEDVPKHFKWQSLSIIRC 317 (606)
T ss_dssp EEEEESCCCCC---------------------------------------------------CCCCCTTCCCSEEEEESC
T ss_pred EEEecCccchh---------------------------------------------------hhhccccccCCEEEcccc
Confidence 88887662111 114566778899999998
Q ss_pred CCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeC---CccccCC-----CCCCCCCCCCCC
Q 038430 566 GGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVG---NEFLEIE-----ESEDDPSSSSSS 636 (677)
Q Consensus 566 ~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~---~~~~~~~-----~~~~~~~~~~~~ 636 (677)
.+..+|.+ .+++|++|++++|.....+ .++.++ |+.|+++++ .++.++ ..+.... ...++.+++ .+
T Consensus 318 ~l~~lp~~--~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~ 392 (606)
T 3vq2_A 318 QLKQFPTL--DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS 392 (606)
T ss_dssp CCSSCCCC--CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCSEEE-EC
T ss_pred cCcccccC--CCCccceeeccCCcCccch-hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCcccc-ch
Confidence 88888854 8888888888888555544 456777 888888764 344431 1110000 001111111 23
Q ss_pred CcccCCCccceeeeccccc-CccccccCCccccCCCcccccC
Q 038430 637 SSVTAFPKVKSLEIKELEE-GNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 637 ~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~p~L~~L~i 677 (677)
.....+++|+.|+++++.. ...+. ..+..+++|++|++
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l 431 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEF---SAFLSLEKLLYLDI 431 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTT---TTTTTCTTCCEEEC
T ss_pred hhccCCCCCCeeECCCCccCCccCh---hhhhccccCCEEEC
Confidence 4457889999999999877 43321 23336899998875
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.4e-21 Score=196.39 Aligned_cols=246 Identities=16% Similarity=0.143 Sum_probs=195.1
Q ss_pred CcccEEEeCCCCCCCCCCc--cCCcccCCCCCcCEEEecC-cccc-ccchhhccCCCcCEEEecCCCCccccCccccccc
Q 038430 326 NRLRTLLIDDESPPNSSLD--KIPENVGKLMHLKYLNLSE-LHIE-RLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLK 401 (677)
Q Consensus 326 ~~L~~L~l~~~~l~~~~~~--~lp~~~~~l~~L~~L~Ls~-~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~ 401 (677)
.+++.|++++ +.... .+|..++.+++|++|++++ |.+. .+|..++++++|++|++++|.....+|..+++++
T Consensus 50 ~~l~~L~L~~----~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSG----LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEEC----CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCC----CCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 5799999997 33334 6888999999999999995 7776 7899999999999999999995558999999999
Q ss_pred ccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCC-cCCcccccCccCCCChhHHHHhhccC
Q 038430 402 NMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQ-LIRKCGIEGLSNVSHLDEAERLELKN 480 (677)
Q Consensus 402 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~-~L~~L~i~~~~~~~~~~~~~~~~l~~ 480 (677)
+|++|++++|...+.+|..++.+++|++|++.++... ......+..+. +|+.|.+++.. +....+..+..
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-----~~~p~~l~~l~~~L~~L~L~~N~----l~~~~~~~~~~ 196 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS-----GAIPDSYGSFSKLFTSMTISRNR----LTGKIPPTFAN 196 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE-----EECCGGGGCCCTTCCEEECCSSE----EEEECCGGGGG
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc-----CcCCHHHhhhhhcCcEEECcCCe----eeccCChHHhC
Confidence 9999999999766688999999999999999988765 34566778887 89999998743 22223344555
Q ss_pred CcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEE
Q 038430 481 MENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKL 560 (677)
Q Consensus 481 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 560 (677)
++ |+.|++++|.... .....+..+++|+.|
T Consensus 197 l~-L~~L~Ls~N~l~~-------------------------------------------------~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEG-------------------------------------------------DASVLFGSDKNTQKI 226 (313)
T ss_dssp CC-CSEEECCSSEEEE-------------------------------------------------CCGGGCCTTSCCSEE
T ss_pred Cc-ccEEECcCCcccC-------------------------------------------------cCCHHHhcCCCCCEE
Confidence 65 9999999872111 133456778999999
Q ss_pred EEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccce-EeCCccccCCCCCCCCCCCCCCC
Q 038430 561 WILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVK-RVGNEFLEIEESEDDPSSSSSSS 637 (677)
Q Consensus 561 ~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~-~i~~~~~~~~~~~~~~~~~~~~~ 637 (677)
++++|.+...++.+..+++|++|++++|.....+|. ++.++ |+.|++++++ ++ .++.
T Consensus 227 ~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~------------------- 286 (313)
T 1ogq_A 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN-LCGEIPQ------------------- 286 (313)
T ss_dssp ECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE-EEEECCC-------------------
T ss_pred ECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc-ccccCCC-------------------
Confidence 999999886666678899999999999955446665 88999 9999999853 44 3221
Q ss_pred cccCCCccceeeeccccc
Q 038430 638 SVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 638 ~~~~~~~L~~L~l~~~~~ 655 (677)
...+++|+.|.+.+++.
T Consensus 287 -~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 287 -GGNLQRFDVSAYANNKC 303 (313)
T ss_dssp -STTGGGSCGGGTCSSSE
T ss_pred -CccccccChHHhcCCCC
Confidence 25689999999998874
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.6e-20 Score=201.58 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=105.9
Q ss_pred EEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCcccccc-chhhccCCCcCEEE
Q 038430 306 RHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERL-PKTLCELYNLQKLD 383 (677)
Q Consensus 306 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~ 383 (677)
+.++++++.+..+|..+. ++|++|++++ +.+..++ ..+..+++|++|++++|.++.+ |..++++++|++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 75 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQ-----NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCS-----SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEE
T ss_pred ceEecCCCCccccccccc--ccccEEECCC-----CcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEe
Confidence 478899999999997665 8999999996 3445554 6789999999999999999976 66899999999999
Q ss_pred ecCCCCccccCcccccccccceeecCccCCCc-ccCCcCCCCCCCCccCceeeCCC
Q 038430 384 IRGCRNLRELPTGIGKLKNMRSLLNGLTCSLK-YMPIGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 384 L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~~~ 438 (677)
+++|. +..+|.. .+++|++|++++|.... .+|..++++++|++|++.++...
T Consensus 76 Ls~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 76 LSHNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CCSSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred cCCCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 99998 8889986 89999999999996544 46788999999999999987764
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-20 Score=209.11 Aligned_cols=153 Identities=22% Similarity=0.201 Sum_probs=121.8
Q ss_pred cCCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccc-hhhccC
Q 038430 300 AFGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLP-KTLCEL 376 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~l 376 (677)
.++..++.|++++|.+..++ ..|.++++|++|++++ +.+..+ |..|+++++|++|++++|.++.+| ..++++
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-----n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-----CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTT-----CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CccccccEEEccCCccCccChhHhhCCCCceEEECCC-----CcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 45778999999999998775 5789999999999996 334555 456899999999999999998776 569999
Q ss_pred CCcCEEEecCCCCccccCc-ccccccccceeecCccCCCc-ccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCC
Q 038430 377 YNLQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLK-YMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQ 454 (677)
Q Consensus 377 ~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~ 454 (677)
++|++|++++|. +..+|. .++++++|++|++++|.... .+|..++++++|++|++.++.... .....++.+.
T Consensus 100 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~ 173 (570)
T 2z63_A 100 SSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-----IYCTDLRVLH 173 (570)
T ss_dssp TTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE-----ECGGGGHHHH
T ss_pred cccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce-----ecHHHccchh
Confidence 999999999998 777765 68999999999999995443 468889999999999998876652 2334455555
Q ss_pred cC----CcccccC
Q 038430 455 LI----RKCGIEG 463 (677)
Q Consensus 455 ~L----~~L~i~~ 463 (677)
+| ..+.++.
T Consensus 174 ~L~~~~~~L~l~~ 186 (570)
T 2z63_A 174 QMPLLNLSLDLSL 186 (570)
T ss_dssp TCTTCCCEEECTT
T ss_pred ccchhhhhcccCC
Confidence 55 4555554
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-20 Score=205.35 Aligned_cols=130 Identities=21% Similarity=0.247 Sum_probs=105.4
Q ss_pred CCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCcc-cCCCCCcCEEEecCccccc--cchhhccCC
Q 038430 302 GGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPEN-VGKLMHLKYLNLSELHIER--LPKTLCELY 377 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~~l~~L~~L~Ls~~~i~~--lp~~i~~l~ 377 (677)
..+++.|++++|.+..++ ..|..+++|++|++++ +.+..+|.. ++.+++|++|++++|.++. .|..+++++
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD-----NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-----SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCC-----CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 568999999999987776 6789999999999996 344555544 8999999999999999884 467789999
Q ss_pred CcCEEEecCCCCccccC-cccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeC
Q 038430 378 NLQKLDIRGCRNLRELP-TGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVG 436 (677)
Q Consensus 378 ~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 436 (677)
+|++|++++|..+..+| ..++.+++|++|++++|...+..|..++.+++|++|++..+.
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 99999999998677777 468899999999999997666678888877777777665544
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.2e-20 Score=191.18 Aligned_cols=250 Identities=17% Similarity=0.125 Sum_probs=190.7
Q ss_pred cCCCceEEEEEEecCCCcccc-cccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchh-hccC
Q 038430 300 AFGGKVRHLGLKFKGGASFPM-SIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKT-LCEL 376 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l 376 (677)
.++.+++.|+++++.+..+|. .+..+++|++|++++ +.+..+ |..++++++|++|++++|.++.+|.. ++++
T Consensus 49 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 123 (353)
T 2z80_A 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS-----NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPL 123 (353)
T ss_dssp TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-----SCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTC
T ss_pred cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCC-----CccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCC
Confidence 346789999999999988875 799999999999996 344444 45689999999999999999988876 8999
Q ss_pred CCcCEEEecCCCCccccCc--ccccccccceeecCccCCCccc-CCcCCCCCCCCccCceeeCCCcCCCCcccccccccC
Q 038430 377 YNLQKLDIRGCRNLRELPT--GIGKLKNMRSLLNGLTCSLKYM-PIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNF 453 (677)
Q Consensus 377 ~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l 453 (677)
++|++|++++|. +..+|. .+..+++|++|++++|..+..+ |..++.+++|++|++.++... ......+..+
T Consensus 124 ~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~l~~l 197 (353)
T 2z80_A 124 SSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-----SYEPKSLKSI 197 (353)
T ss_dssp TTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-----EECTTTTTTC
T ss_pred ccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC-----ccCHHHHhcc
Confidence 999999999998 778887 6889999999999999656666 467899999999999988765 3346678888
Q ss_pred CcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccch
Q 038430 454 QLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGE 533 (677)
Q Consensus 454 ~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (677)
++|+.|.+++.. +.......+..+++|+.|++++|......+
T Consensus 198 ~~L~~L~l~~n~----l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---------------------------------- 239 (353)
T 2z80_A 198 QNVSHLILHMKQ----HILLLEIFVDVTSSVECLELRDTDLDTFHF---------------------------------- 239 (353)
T ss_dssp SEEEEEEEECSC----STTHHHHHHHHTTTEEEEEEESCBCTTCCC----------------------------------
T ss_pred ccCCeecCCCCc----cccchhhhhhhcccccEEECCCCccccccc----------------------------------
Confidence 999999998754 222233334557999999999883222100
Q ss_pred hhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCC-----CCChhHhhccCCCeEEEeCCCCCCcCCC--CCCcc-ccee
Q 038430 534 YEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGN-----ILPKWLTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKL 605 (677)
Q Consensus 534 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L 605 (677)
.........+.++.++++++.+. .+|.++..+++|+.|++++| .+..+|. ++.++ |+.|
T Consensus 240 ------------~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L 306 (353)
T 2z80_A 240 ------------SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKI 306 (353)
T ss_dssp ------------C------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred ------------cccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEE
Confidence 00011223466777888777654 25777788888888888888 5667775 57888 8888
Q ss_pred eccccc
Q 038430 606 ELCHLK 611 (677)
Q Consensus 606 ~l~~~~ 611 (677)
++++++
T Consensus 307 ~L~~N~ 312 (353)
T 2z80_A 307 WLHTNP 312 (353)
T ss_dssp ECCSSC
T ss_pred EeeCCC
Confidence 888753
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=202.39 Aligned_cols=126 Identities=16% Similarity=0.143 Sum_probs=99.9
Q ss_pred CCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchhhccCCC
Q 038430 301 FGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKTLCELYN 378 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~ 378 (677)
.+.+++.|++++|.+..++ ..+..+++|++|++++ +.+..+ |..++.+++|++|++++|.++.+|.. .+++
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-----N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 122 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSH-----NRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMAS 122 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCS-----CCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTT
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCC-----CCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--cccc
Confidence 4678999999999998876 6899999999999996 344444 66788999999999999999998876 8999
Q ss_pred cCEEEecCCCCcccc--CcccccccccceeecCccCCCcccCCcCCCCCCC--CccCceeeCC
Q 038430 379 LQKLDIRGCRNLREL--PTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSL--RTLDKFAVGG 437 (677)
Q Consensus 379 L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L--~~L~l~~~~~ 437 (677)
|++|++++|. +..+ |..++++++|++|++++|.... ..+..+++| ++|++..+..
T Consensus 123 L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 123 LRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSC
T ss_pred CCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccc
Confidence 9999999998 6654 4789999999999999985332 234455555 7777766544
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=7.2e-20 Score=189.73 Aligned_cols=266 Identities=16% Similarity=0.146 Sum_probs=197.8
Q ss_pred CCCceEEEEEEecCCCcccc-cccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchhhccCCC
Q 038430 301 FGGKVRHLGLKFKGGASFPM-SIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKTLCELYN 378 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~ 378 (677)
++..++.|+++++.+..++. .+..+++|++|++++ +.+..+ |..++.+++|++|++++|.++.+|..+. ++
T Consensus 50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~ 122 (330)
T 1xku_A 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN-----NKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KT 122 (330)
T ss_dssp CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-----SCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TT
T ss_pred CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCC-----CcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--cc
Confidence 46789999999999988874 799999999999996 334444 7789999999999999999999988765 79
Q ss_pred cCEEEecCCCCccccCc-ccccccccceeecCccCCCc--ccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCc
Q 038430 379 LQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLK--YMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQL 455 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~--~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~ 455 (677)
|++|++++|. +..++. .+..+++|++|++++|.... ..+..+..+++|++|++.++.....+ ..+ .++
T Consensus 123 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~------~~~--~~~ 193 (330)
T 1xku_A 123 LQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP------QGL--PPS 193 (330)
T ss_dssp CCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC------SSC--CTT
T ss_pred ccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC------ccc--ccc
Confidence 9999999998 666654 58999999999999995432 45667889999999999887765421 111 267
Q ss_pred CCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhh
Q 038430 456 IRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYE 535 (677)
Q Consensus 456 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (677)
|+.|.+++.. +.......+..+++|+.|++++|....
T Consensus 194 L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------------------------------------- 230 (330)
T 1xku_A 194 LTELHLDGNK----ITKVDAASLKGLNNLAKLGLSFNSISA--------------------------------------- 230 (330)
T ss_dssp CSEEECTTSC----CCEECTGGGTTCTTCCEEECCSSCCCE---------------------------------------
T ss_pred CCEEECCCCc----CCccCHHHhcCCCCCCEEECCCCcCce---------------------------------------
Confidence 8888888743 223334557889999999999882211
Q ss_pred hhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCC--CC------Ccc-cceee
Q 038430 536 ERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPP--LG------KLP-LEKLE 606 (677)
Q Consensus 536 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~--l~------~l~-L~~L~ 606 (677)
.....+..+++|+.|++++|.+..+|.++..+++|++|++++| .+..++. +. ..+ |+.|+
T Consensus 231 ----------~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~ 299 (330)
T 1xku_A 231 ----------VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVS 299 (330)
T ss_dssp ----------ECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred ----------eChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceE
Confidence 0112345578999999999999999999999999999999999 6666654 22 246 88899
Q ss_pred ccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeeccc
Q 038430 607 LCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKEL 653 (677)
Q Consensus 607 l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 653 (677)
+.+.+ ++.... .+.....+++|+.++++++
T Consensus 300 l~~N~-~~~~~i----------------~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 300 LFSNP-VQYWEI----------------QPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCSSS-SCGGGS----------------CGGGGTTCCCGGGEEC---
T ss_pred eecCc-cccccc----------------CccccccccceeEEEeccc
Confidence 98743 322110 0111245677888888764
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=195.90 Aligned_cols=230 Identities=16% Similarity=0.155 Sum_probs=171.9
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+++.|++++|.+..+| +..+++|++|++++| .+..+| ++.+++|++|++++|.++.+| ++.+++|++
T Consensus 63 l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-----~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-----KLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTY 131 (457)
T ss_dssp CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-----CCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-----CCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCE
Confidence 578999999999998886 888999999999964 344454 788999999999999999886 889999999
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++++|. +..+| ++.+++|++|++++|..++.+ .++.+++|++|++.++.... +. +..+++|+.|.+
T Consensus 132 L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-------l~-l~~l~~L~~L~l 198 (457)
T 3bz5_A 132 LNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-------LD-VSQNKLLNRLNC 198 (457)
T ss_dssp EECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-------CC-CTTCTTCCEEEC
T ss_pred EECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-------ec-cccCCCCCEEEC
Confidence 9999998 76675 889999999999999767666 47889999999998887653 22 677888888888
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcch
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKN 541 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (677)
++..- ... .+..+++|+.|++++|....
T Consensus 199 ~~N~l-~~~------~l~~l~~L~~L~Ls~N~l~~--------------------------------------------- 226 (457)
T 3bz5_A 199 DTNNI-TKL------DLNQNIQLTFLDCSSNKLTE--------------------------------------------- 226 (457)
T ss_dssp CSSCC-SCC------CCTTCTTCSEEECCSSCCSC---------------------------------------------
T ss_pred cCCcC-Cee------ccccCCCCCEEECcCCcccc---------------------------------------------
Confidence 77432 111 37778999999998872111
Q ss_pred hhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCC----------CeEEEeCCCCCCcCCCCCCcc-cceeecccc
Q 038430 542 EKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNL----------SDLKLVFCENCEQLPPLGKLP-LEKLELCHL 610 (677)
Q Consensus 542 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L----------~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~ 610 (677)
+ + +..+++|+.|++++|.+..+| +..+++| +.|++++|.....+| .+.++ |+.|++++|
T Consensus 227 -----i-p-~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 227 -----I-D-VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHN 296 (457)
T ss_dssp -----C-C-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTC
T ss_pred -----c-C-ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCC
Confidence 1 1 455678888888888877766 3344444 444555554444444 45667 888888877
Q ss_pred ccceEeC
Q 038430 611 KSVKRVG 617 (677)
Q Consensus 611 ~~l~~i~ 617 (677)
+.+..++
T Consensus 297 ~~l~~l~ 303 (457)
T 3bz5_A 297 TQLYLLD 303 (457)
T ss_dssp TTCCEEE
T ss_pred cccceec
Confidence 7666654
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=7e-20 Score=204.20 Aligned_cols=142 Identities=17% Similarity=0.164 Sum_probs=113.3
Q ss_pred eEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCcccccc-chhhccCCCcCEE
Q 038430 305 VRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERL-PKTLCELYNLQKL 382 (677)
Q Consensus 305 l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L 382 (677)
.+.++++++.+..+|..+. ++|++|++++ +.+..+| ..++++++|++|++++|.++.+ |..++++++|++|
T Consensus 33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~-----N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQ-----NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC--TTCCEEECCS-----SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CcEEEcCCCCCccCCCCCC--CCcCEEECCC-----CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 3789999999999997664 8999999996 3455555 5789999999999999999977 5679999999999
Q ss_pred EecCCCCccccCcccccccccceeecCccCCCccc--CCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccc
Q 038430 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYM--PIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCG 460 (677)
Q Consensus 383 ~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~--p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 460 (677)
++++|. +..+|.. .+++|++|++++|. +..+ |..++++++|++|++.++.... ..+..+.++ +|+.|.
T Consensus 106 ~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L-~L~~L~ 175 (562)
T 3a79_B 106 DVSHNR-LQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ-----LDLLPVAHL-HLSCIL 175 (562)
T ss_dssp ECTTSC-CCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT-----TTTGGGTTS-CEEEEE
T ss_pred ECCCCc-CCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc-----Cchhhhhhc-eeeEEE
Confidence 999998 8899986 89999999999995 4444 4789999999999999877652 233333333 235555
Q ss_pred ccC
Q 038430 461 IEG 463 (677)
Q Consensus 461 i~~ 463 (677)
+.+
T Consensus 176 L~~ 178 (562)
T 3a79_B 176 LDL 178 (562)
T ss_dssp EEE
T ss_pred eec
Confidence 544
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=206.64 Aligned_cols=179 Identities=19% Similarity=0.121 Sum_probs=128.2
Q ss_pred cCCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccch-hhccCC
Q 038430 300 AFGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPK-TLCELY 377 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~ 377 (677)
.++.++++|+++++.+..+| ..|.++++|++|++++ +......|..++++++|++|++++|.++.+|+ .+++++
T Consensus 22 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF----NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97 (680)
T ss_dssp CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCS----SCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCC----CccCccCHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence 34678899999999888776 4688889999999986 32223335667888999999999999888877 488999
Q ss_pred CcCEEEecCCCCccccC-cccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCccccccc--ccCC
Q 038430 378 NLQKLDIRGCRNLRELP-TGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECL--KNFQ 454 (677)
Q Consensus 378 ~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~l~ 454 (677)
+|++|++++|. +..+| ..++++++|++|++++|......|..++++++|++|++.++.... .....+ ..++
T Consensus 98 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~~~~ 171 (680)
T 1ziw_A 98 NLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-----LKSEELDIFANS 171 (680)
T ss_dssp TCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC-----BCHHHHGGGTTC
T ss_pred CCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc-----cCHHHhhccccc
Confidence 99999999988 55665 568889999999999986555556678888999999888776542 222222 2446
Q ss_pred cCCcccccCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 455 LIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 455 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
+|+.|.+++.. +.......+..+.+|+.|++..+
T Consensus 172 ~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~l~~~ 205 (680)
T 1ziw_A 172 SLKKLELSSNQ----IKEFSPGCFHAIGRLFGLFLNNV 205 (680)
T ss_dssp EESEEECTTCC----CCCBCTTGGGGSSEECEEECTTC
T ss_pred cccEEECCCCc----ccccChhhhhhhhhhhhhhcccc
Confidence 77777777642 11222333555666666666544
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=201.61 Aligned_cols=268 Identities=14% Similarity=0.005 Sum_probs=154.5
Q ss_pred CCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccchh-hccCCC
Q 038430 302 GGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLPKT-LCELYN 378 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~ 378 (677)
...++.|++.+|.+..++ ..|..+++|++|++++ +.+..+| ..++.+++|++|+|++|.++.+|+. ++++++
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 148 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-----NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCC-----CcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCC
Confidence 457888888888877665 4778888888888875 2344444 4467888888888888888877776 478888
Q ss_pred cCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCC---------cccccc
Q 038430 379 LQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGS---------TCRLEC 449 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~---------~~~~~~ 449 (677)
|++|+|++|......|..++.+++|++|++++|. +..+| ++.+++|+.|++.++........ ...+..
T Consensus 149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 225 (597)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCE
T ss_pred CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccc
Confidence 8888888887333344467888888888888874 33333 33344444444433322110000 000000
Q ss_pred --cccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCC
Q 038430 450 --LKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGG 527 (677)
Q Consensus 450 --L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (677)
.....+|+.|.++++.-. . ...+..+++|+.|++++|......|.. ++.
T Consensus 226 ~~~~~~~~L~~L~L~~n~l~-~-----~~~l~~l~~L~~L~Ls~N~l~~~~~~~--------~~~--------------- 276 (597)
T 3oja_B 226 VRGPVNVELTILKLQHNNLT-D-----TAWLLNYPGLVEVDLSYNELEKIMYHP--------FVK--------------- 276 (597)
T ss_dssp EECSCCSCCCEEECCSSCCC-C-----CGGGGGCTTCSEEECCSSCCCEEESGG--------GTT---------------
T ss_pred cccccCCCCCEEECCCCCCC-C-----ChhhccCCCCCEEECCCCccCCCCHHH--------hcC---------------
Confidence 000123444444332111 1 122444455555555544111100000 000
Q ss_pred ccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceee
Q 038430 528 KVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLE 606 (677)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~ 606 (677)
............ ....+...+..+++|+.|+|++|.+..+|.++..+++|++|+|++| .+..+| ++.++ |+.|+
T Consensus 277 -l~~L~~L~Ls~N--~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~L~~L~ 351 (597)
T 3oja_B 277 -MQRLERLYISNN--RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLK-LSTHHTLKNLT 351 (597)
T ss_dssp -CSSCCEEECTTS--CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS-CCCCCC-CCTTCCCSEEE
T ss_pred -ccCCCEEECCCC--CCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCC-CCCCcC-hhhcCCCCEEE
Confidence 000000000000 0001223345678999999999999999999999999999999999 566665 77889 99999
Q ss_pred ccccc
Q 038430 607 LCHLK 611 (677)
Q Consensus 607 l~~~~ 611 (677)
+++++
T Consensus 352 l~~N~ 356 (597)
T 3oja_B 352 LSHND 356 (597)
T ss_dssp CCSSC
T ss_pred eeCCC
Confidence 99854
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-18 Score=201.23 Aligned_cols=332 Identities=14% Similarity=0.058 Sum_probs=213.1
Q ss_pred EEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCcc-CCcccCCCCCcCEEEecCcc-cccc-chhhccCCCcCEE
Q 038430 306 RHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDK-IPENVGKLMHLKYLNLSELH-IERL-PKTLCELYNLQKL 382 (677)
Q Consensus 306 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~-lp~~~~~l~~L~~L~Ls~~~-i~~l-p~~i~~l~~L~~L 382 (677)
+.++.+++.+..+|. ..++|++|++++ +.+.. .|..++++++|++|+|++|. +..+ |..++++++|++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~-----N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L 78 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSF-----NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEES-----CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEE
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCC-----CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEE
Confidence 456677788888986 458999999996 33444 46779999999999999996 4566 6679999999999
Q ss_pred EecCCCCccccCcccccccccceeecCccCCCcccCCc--CCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccc
Q 038430 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIG--ISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCG 460 (677)
Q Consensus 383 ~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~--i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 460 (677)
+|++|......|..++++++|++|++++|.....+|.. ++++++|++|++.++.... ......++++++|+.|+
T Consensus 79 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~----~~~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS----LYLHPSFGKLNSLKSID 154 (844)
T ss_dssp ECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC----CCCCGGGGTCSSCCEEE
T ss_pred ECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc----cccchhHhhCCCCCEEE
Confidence 99999944455888999999999999999665556665 8999999999999988764 22335788999999999
Q ss_pred ccCccCCCChhHHHHhhccCC--cccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhh
Q 038430 461 IEGLSNVSHLDEAERLELKNM--ENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERR 538 (677)
Q Consensus 461 i~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (677)
+++..-... ....+..+ ++|+.|+++.|......+.......+..... ....-....+......+.......
T Consensus 155 Ls~N~i~~~----~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~~~~l 228 (844)
T 3j0a_A 155 FSSNQIFLV----CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM--VLEILDVSGNGWTVDITGNFSNAI 228 (844)
T ss_dssp EESSCCCCC----CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC--CBSEEBCSSCCSSTTTTSGGGGTS
T ss_pred CCCCcCCee----CHHHcccccCCccceEECCCCccccccccchhhcCCccccC--ceeEEecCCCcCchhHHHHHHhhc
Confidence 987532221 12223333 7899999998843332111000000000000 000000011111100000000000
Q ss_pred cc-h------------------hhHHHHhhhcCC--CCCCcEEEEecCCCCCC-ChhHhhccCCCeEEEeCCCCCCcCC-
Q 038430 539 RK-N------------------EKDEQLLEALQP--PLNVEKLWILFNGGNIL-PKWLTSLTNLSDLKLVFCENCEQLP- 595 (677)
Q Consensus 539 ~~-~------------------~~~~~~~~~l~~--~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~~~~l~- 595 (677)
.. . .........+.. +++|+.|++++|.+..+ |..+..+++|+.|+|++|......|
T Consensus 229 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 308 (844)
T 3j0a_A 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308 (844)
T ss_dssp CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence 00 0 000000111111 36899999999988754 5667799999999999994333333
Q ss_pred CCCCcc-cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCccc
Q 038430 596 PLGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSS 674 (677)
Q Consensus 596 ~l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~ 674 (677)
.++.++ |+.|+++++ .++.+.... ...+++|+.|+++++.-..++. ..+..+++|++
T Consensus 309 ~~~~l~~L~~L~Ls~N-~l~~~~~~~------------------~~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~ 366 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYN-LLGELYSSN------------------FYGLPKVAYIDLQKNHIAIIQD---QTFKFLEKLQT 366 (844)
T ss_dssp TTTTCSSCCEEEEESC-CCSCCCSCS------------------CSSCTTCCEEECCSCCCCCCCS---SCSCSCCCCCE
T ss_pred HhcCCCCCCEEECCCC-CCCccCHHH------------------hcCCCCCCEEECCCCCCCccCh---hhhcCCCCCCE
Confidence 378899 999999984 454443222 3678999999999886533332 22346889998
Q ss_pred ccC
Q 038430 675 LRI 677 (677)
Q Consensus 675 L~i 677 (677)
|++
T Consensus 367 L~L 369 (844)
T 3j0a_A 367 LDL 369 (844)
T ss_dssp EEE
T ss_pred EEC
Confidence 864
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-19 Score=199.13 Aligned_cols=131 Identities=17% Similarity=0.166 Sum_probs=101.4
Q ss_pred CCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccch-hhccCCC
Q 038430 302 GGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLPK-TLCELYN 378 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~ 378 (677)
..+++.|++++|.+..++ ..|.++++|++|++++ +.+..+| ..|+++++|++|++++|.++.+|. .++++++
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-----NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT-----CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcC-----CcCCccCHhhhcCccccccccccccccccCCCcccccccc
Confidence 568899999999887775 5688899999999985 3344444 668889999999999999888776 5889999
Q ss_pred cCEEEecCCCCcc--ccCcccccccccceeecCccCCCcccCCcCCCCCCC----CccCceeeCCC
Q 038430 379 LQKLDIRGCRNLR--ELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSL----RTLDKFAVGGG 438 (677)
Q Consensus 379 L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L----~~L~l~~~~~~ 438 (677)
|++|++++|. +. .+|..++++++|++|++++|......|..++.+++| +.|++.++...
T Consensus 126 L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~ 190 (570)
T 2z63_A 126 LKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (570)
T ss_dssp CCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred ccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCce
Confidence 9999999987 54 468889999999999999885444445567777777 56666555443
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=199.19 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=18.6
Q ss_pred cCCCccceeeecccccCccccccCCccc-cCCCcccccC
Q 038430 640 TAFPKVKSLEIKELEEGNYRITRKENIS-IIPRLSSLRI 677 (677)
Q Consensus 640 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~p~L~~L~i 677 (677)
..+++|+.|+++++.-..++.. .+. .+++|++|++
T Consensus 581 ~~l~~L~~L~L~~N~l~~~~~~---~~~~~~~~L~~l~l 616 (680)
T 1ziw_A 581 NNQVSLKSLNLQKNLITSVEKK---VFGPAFRNLTELDM 616 (680)
T ss_dssp TTCTTCCEEECTTSCCCBCCHH---HHHHHHTTCSEEEC
T ss_pred CCCCCCCEEECCCCcCCccChh---HhcccccccCEEEc
Confidence 4567777777777644333221 111 3566766653
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-19 Score=181.42 Aligned_cols=238 Identities=19% Similarity=0.134 Sum_probs=164.1
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcc-cCCCCCcCEEEecCcccccc---chhhccCCCcCEE
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPEN-VGKLMHLKYLNLSELHIERL---PKTLCELYNLQKL 382 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~~l~~L~~L~Ls~~~i~~l---p~~i~~l~~L~~L 382 (677)
.++..++++..+|..+. ++|++|++++ +.+..+|.. ++.+++|++|++++|.++.+ |..+..+++|++|
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~-----n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 83 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELES-----NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCS-----SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCC-----CccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence 45666666777775443 5788888874 344566654 57788888888888877644 5667778888888
Q ss_pred EecCCCCccccCcccccccccceeecCccCCCcccC--CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccc
Q 038430 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMP--IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCG 460 (677)
Q Consensus 383 ~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 460 (677)
++++|. +..+|..+..+++|++|++++|. +..++ ..+..+++|++|++.++... ......+..+++|+.|.
T Consensus 84 ~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 84 DLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTR-----VAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp ECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCE-----ECSTTTTTTCTTCCEEE
T ss_pred ECCCCc-cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCC-----ccchhhcccCcCCCEEE
Confidence 888877 66777777788888888888873 44444 35777788888877766554 22334566677777777
Q ss_pred ccCccCCCChhH-HHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhc
Q 038430 461 IEGLSNVSHLDE-AERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRR 539 (677)
Q Consensus 461 i~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (677)
+++.. +.. ..+..+..+++|+.|++++|....
T Consensus 157 l~~n~----l~~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------------------------------- 189 (306)
T 2z66_A 157 MAGNS----FQENFLPDIFTELRNLTFLDLSQCQLEQ------------------------------------------- 189 (306)
T ss_dssp CTTCE----EGGGEECSCCTTCTTCCEEECTTSCCCE-------------------------------------------
T ss_pred CCCCc----cccccchhHHhhCcCCCEEECCCCCcCC-------------------------------------------
Confidence 77632 221 223456778889999998772111
Q ss_pred chhhHHHHhhhcCCCCCCcEEEEecCCCCCCCh-hHhhccCCCeEEEeCCCCCCcCC-CCCCcc--cceeeccccc
Q 038430 540 KNEKDEQLLEALQPPLNVEKLWILFNGGNILPK-WLTSLTNLSDLKLVFCENCEQLP-PLGKLP--LEKLELCHLK 611 (677)
Q Consensus 540 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~~~~l~-~l~~l~--L~~L~l~~~~ 611 (677)
.....+..+++|+.|++++|.+..+|. .+..+++|++|++++|......| .+..+| |+.|++++++
T Consensus 190 ------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 190 ------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ------ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ------cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 112345667899999999999887765 56789999999999994444444 367774 9999999843
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.7e-19 Score=184.24 Aligned_cols=263 Identities=16% Similarity=0.156 Sum_probs=196.4
Q ss_pred EEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccc-hhhccCCCcCEEEec
Q 038430 308 LGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLP-KTLCELYNLQKLDIR 385 (677)
Q Consensus 308 L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~L~ 385 (677)
.+.+++.+..+|..+. ++|++|++++ +.+..+|. .+..+++|++|++++|.++.++ ..++++++|++|+++
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~-----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSN-----NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTT-----SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred eeCCCCCccccccccc--ccCcEEECCC-----CcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 5667788888987654 5899999995 44556665 6899999999999999999774 569999999999999
Q ss_pred CCCCccccCcc-cccccccceeecCccCCCcccCC--cCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccccc
Q 038430 386 GCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPI--GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIE 462 (677)
Q Consensus 386 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~ 462 (677)
+|. +..+|.. ++.+++|++|++++| .+..+|. .++++++|++|++.++.... ......+..+++|+.|.++
T Consensus 109 ~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 109 YNY-LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFT----KIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp SSC-CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCC----EECTTTTTTCCEEEEEEEE
T ss_pred CCc-CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccc----ccCHHHccCCCCCCEEECC
Confidence 998 7788876 899999999999999 4667776 68899999999999874322 3344567888889999888
Q ss_pred CccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchh
Q 038430 463 GLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNE 542 (677)
Q Consensus 463 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (677)
+.. +.......+..+++|+.|++++|....
T Consensus 183 ~n~----l~~~~~~~l~~l~~L~~L~l~~n~l~~---------------------------------------------- 212 (353)
T 2z80_A 183 ASD----LQSYEPKSLKSIQNVSHLILHMKQHIL---------------------------------------------- 212 (353)
T ss_dssp ETT----CCEECTTTTTTCSEEEEEEEECSCSTT----------------------------------------------
T ss_pred CCC----cCccCHHHHhccccCCeecCCCCcccc----------------------------------------------
Confidence 743 222334557788999999999872111
Q ss_pred hHHHHhhhcCCCCCCcEEEEecCCCCCCCh-hH---hhccCCCeEEEeCCCCCC----cCCC-CCCcc-cceeecccccc
Q 038430 543 KDEQLLEALQPPLNVEKLWILFNGGNILPK-WL---TSLTNLSDLKLVFCENCE----QLPP-LGKLP-LEKLELCHLKS 612 (677)
Q Consensus 543 ~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~---~~l~~L~~L~l~~c~~~~----~l~~-l~~l~-L~~L~l~~~~~ 612 (677)
..... +..+++|+.|++++|.+..++. .+ ...+.++.+++.++.... .+|. ++.++ |+.|++++ +.
T Consensus 213 ~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~-N~ 288 (353)
T 2z80_A 213 LLEIF---VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR-NQ 288 (353)
T ss_dssp HHHHH---HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS-SC
T ss_pred chhhh---hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC-CC
Confidence 11111 2235889999999998876542 12 256778899998883321 2343 67889 99999998 45
Q ss_pred ceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeeccccc
Q 038430 613 VKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 613 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
++.++...+ ..+++|++|++++++-
T Consensus 289 l~~i~~~~~------------------~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 289 LKSVPDGIF------------------DRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCCCCTTTT------------------TTCTTCCEEECCSSCB
T ss_pred CCccCHHHH------------------hcCCCCCEEEeeCCCc
Confidence 776655432 5689999999999875
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-19 Score=181.87 Aligned_cols=242 Identities=16% Similarity=0.114 Sum_probs=185.8
Q ss_pred cEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchh-hccCCCcCEEEecCCCCcccc---Ccccccccccc
Q 038430 329 RTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKT-LCELYNLQKLDIRGCRNLREL---PTGIGKLKNMR 404 (677)
Q Consensus 329 ~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l---p~~i~~l~~L~ 404 (677)
+.++.+ +..+..+|..+. ++|++|++++|.++.+|.. +.++++|++|++++|. +..+ |..+..+++|+
T Consensus 10 ~~l~c~-----~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~ 81 (306)
T 2z66_A 10 TEIRCN-----SKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLK 81 (306)
T ss_dssp TEEECC-----SSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCC
T ss_pred CEEEcC-----CCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccC
Confidence 456665 456778887553 6899999999999999876 7899999999999998 5544 66778899999
Q ss_pred eeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCccc
Q 038430 405 SLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENL 484 (677)
Q Consensus 405 ~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L 484 (677)
+|++++| .+..+|..+..+++|++|++.++.... ......+..+++|+.|.+++.. +.......+..+++|
T Consensus 82 ~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L 152 (306)
T 2z66_A 82 YLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQ----MSEFSVFLSLRNLIYLDISHTH----TRVAFNGIFNGLSSL 152 (306)
T ss_dssp EEECCSC-SEEEEEEEEETCTTCCEEECTTSEEES----STTTTTTTTCTTCCEEECTTSC----CEECSTTTTTTCTTC
T ss_pred EEECCCC-ccccChhhcCCCCCCCEEECCCCcccc----cccchhhhhccCCCEEECCCCc----CCccchhhcccCcCC
Confidence 9999999 566788889999999999998876653 2223567888999999998743 222333457788999
Q ss_pred CceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEec
Q 038430 485 LHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILF 564 (677)
Q Consensus 485 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 564 (677)
+.|++++|... ....+..+..+++|+.|++++
T Consensus 153 ~~L~l~~n~l~------------------------------------------------~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 153 EVLKMAGNSFQ------------------------------------------------ENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp CEEECTTCEEG------------------------------------------------GGEECSCCTTCTTCCEEECTT
T ss_pred CEEECCCCccc------------------------------------------------cccchhHHhhCcCCCEEECCC
Confidence 99999877110 011234566789999999999
Q ss_pred CCCCCC-ChhHhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccccccceEeCCccccCCCCCCCCCCCCCCCccc
Q 038430 565 NGGNIL-PKWLTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVT 640 (677)
Q Consensus 565 ~~~~~l-p~~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 640 (677)
|.+..+ |.++..+++|++|++++| .+..++. +..++ |+.|+++++ .++.+.... ..
T Consensus 185 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~------------------~~ 244 (306)
T 2z66_A 185 CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQE------------------LQ 244 (306)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSS------------------CC
T ss_pred CCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCC-CCcccCHHH------------------HH
Confidence 998876 677889999999999999 5666654 77899 999999984 454443322 34
Q ss_pred CCC-ccceeeeccccc
Q 038430 641 AFP-KVKSLEIKELEE 655 (677)
Q Consensus 641 ~~~-~L~~L~l~~~~~ 655 (677)
.+| +|+.|++++++-
T Consensus 245 ~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCCTTCCEEECTTCCE
T ss_pred hhhccCCEEEccCCCe
Confidence 564 899999998775
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.4e-18 Score=182.98 Aligned_cols=235 Identities=19% Similarity=0.245 Sum_probs=132.8
Q ss_pred EEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccc-hhhccCCCcCEEE
Q 038430 306 RHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLP-KTLCELYNLQKLD 383 (677)
Q Consensus 306 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~ 383 (677)
..+...+.++..+|..+. +++++|++++ +.+..+ |..|+++++|++|+|++|.++.++ ..+.++++|++|+
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLME-----NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCS-----SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcC-----CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence 345555566666665443 5677777774 233333 455677777777777777777554 4577777777777
Q ss_pred ecCCCCccccCcc-cccccccceeecCccCCCcccCC-cCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 384 IRGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 384 L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++|. +..+|.. +..+++|++|++++|. +..+|. .+.++++|+.|++.++.... ......+..+.+|+.|++
T Consensus 130 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~----~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 130 LFDNW-LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLE----YISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp CCSSC-CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCC----EECTTTTTTCTTCCEEEC
T ss_pred CCCCc-CCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCcc----ccChhhccCCCCCCEEEC
Confidence 77776 5555543 6667777777777774 444443 46677777777766543222 112223444555555555
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcch
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKN 541 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (677)
++..- ... ..+..+++|+.|++++|....
T Consensus 204 ~~n~l-~~~-----~~~~~l~~L~~L~Ls~N~l~~--------------------------------------------- 232 (452)
T 3zyi_A 204 GMCNI-KDM-----PNLTPLVGLEELEMSGNHFPE--------------------------------------------- 232 (452)
T ss_dssp TTSCC-SSC-----CCCTTCTTCCEEECTTSCCSE---------------------------------------------
T ss_pred CCCcc-ccc-----ccccccccccEEECcCCcCcc---------------------------------------------
Confidence 44311 111 124445566666665551110
Q ss_pred hhHHHHhhhcCCCCCCcEEEEecCCCCCC-ChhHhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccc
Q 038430 542 EKDEQLLEALQPPLNVEKLWILFNGGNIL-PKWLTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCH 609 (677)
Q Consensus 542 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~ 609 (677)
.....+..+++|+.|++++|.+..+ |..+..+++|+.|+|++| .+..+|. +..++ |+.|++++
T Consensus 233 ----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 233 ----IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp ----ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCS
T ss_pred ----cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccC
Confidence 0122344556666666666666543 444556666666666666 4445543 45566 66666665
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.1e-18 Score=181.10 Aligned_cols=236 Identities=21% Similarity=0.265 Sum_probs=140.2
Q ss_pred EEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccc-hhhccCCCcCEEE
Q 038430 306 RHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLP-KTLCELYNLQKLD 383 (677)
Q Consensus 306 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~ 383 (677)
..+...+..+..+|..+. ++++.|++++ +.+..++ ..+.++++|++|+|++|.++.++ ..+.++++|++|+
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHE-----NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCS-----CCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccC-----CcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE
Confidence 355666666677775543 5677777775 3344433 55677778888888888777654 4577778888888
Q ss_pred ecCCCCccccCc-ccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 384 IRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 384 L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++|. +..+|. .+..+++|++|++++|. +..+| ..+..+++|++|++.++.... ......+..+++|+.|.+
T Consensus 119 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~----~i~~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 119 LFDNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLS----YISEGAFEGLSNLRYLNL 192 (440)
T ss_dssp CCSSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCC----EECTTTTTTCSSCCEEEC
T ss_pred CCCCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcc----eeCcchhhcccccCeecC
Confidence 88776 666655 47777788888888774 44444 356777777777776543322 222233555555666655
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcch
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKN 541 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (677)
++..- ..+ ..+..+++|+.|++++|....
T Consensus 193 ~~n~l-~~~-----~~~~~l~~L~~L~Ls~N~l~~--------------------------------------------- 221 (440)
T 3zyj_A 193 AMCNL-REI-----PNLTPLIKLDELDLSGNHLSA--------------------------------------------- 221 (440)
T ss_dssp TTSCC-SSC-----CCCTTCSSCCEEECTTSCCCE---------------------------------------------
T ss_pred CCCcC-ccc-----cccCCCcccCEEECCCCccCc---------------------------------------------
Confidence 55321 111 124455666666666551110
Q ss_pred hhHHHHhhhcCCCCCCcEEEEecCCCCCC-ChhHhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeecccc
Q 038430 542 EKDEQLLEALQPPLNVEKLWILFNGGNIL-PKWLTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHL 610 (677)
Q Consensus 542 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~ 610 (677)
.....+..+++|++|+|++|.+..+ |..+..+++|+.|+|++| .+..+|. +..++ |+.|+|+++
T Consensus 222 ----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 222 ----IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp ----ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred ----cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCC
Confidence 0122344556677777766666544 334556667777777666 4445543 55666 667766653
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=176.32 Aligned_cols=219 Identities=16% Similarity=0.174 Sum_probs=144.3
Q ss_pred EEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCcccccc-chhhccCCCcCEEE
Q 038430 306 RHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERL-PKTLCELYNLQKLD 383 (677)
Q Consensus 306 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~ 383 (677)
+.++..++++..+|..+ .++|++|++++ +.+..+| ..+..+++|++|++++|.++.+ |..+.++++|++|+
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~-----n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 86 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHG-----NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTT-----SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeC-----CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe
Confidence 45666777777777543 46788888875 3444454 4577888888888888888765 56688888888888
Q ss_pred ecCCCCcccc-CcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccccc
Q 038430 384 IRGCRNLREL-PTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIE 462 (677)
Q Consensus 384 L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~ 462 (677)
+++|..+..+ |..+..+++|++|++++|......|..++.+++|++|++.++.... .....+..+++|+.|.++
T Consensus 87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-----LPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECC
T ss_pred CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-----cCHhHhccCCCccEEECC
Confidence 8888656655 5667888888888888885444445667788888888877766542 222335666667777666
Q ss_pred CccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchh
Q 038430 463 GLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNE 542 (677)
Q Consensus 463 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (677)
+.. +.......+..+++|+.|++++|....
T Consensus 162 ~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------------------------------------- 191 (285)
T 1ozn_A 162 GNR----ISSVPERAFRGLHSLDRLLLHQNRVAH---------------------------------------------- 191 (285)
T ss_dssp SSC----CCEECTTTTTTCTTCCEEECCSSCCCE----------------------------------------------
T ss_pred CCc----ccccCHHHhcCccccCEEECCCCcccc----------------------------------------------
Confidence 531 222222335566777777777661111
Q ss_pred hHHHHhhhcCCCCCCcEEEEecCCCCCCCh-hHhhccCCCeEEEeCCC
Q 038430 543 KDEQLLEALQPPLNVEKLWILFNGGNILPK-WLTSLTNLSDLKLVFCE 589 (677)
Q Consensus 543 ~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~ 589 (677)
.....+..+++|+.|++++|.+..+|. .+..+++|++|++++|+
T Consensus 192 ---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 192 ---VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp ---ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ---cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 012334556777777777777776664 36677777777777773
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-18 Score=185.82 Aligned_cols=224 Identities=19% Similarity=0.206 Sum_probs=183.3
Q ss_pred cCCCceEEEEEEecCCCcc-cccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchh-hccC
Q 038430 300 AFGGKVRHLGLKFKGGASF-PMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKT-LCEL 376 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l 376 (677)
.++.+++.|++++|.+..+ |..|..+++|++|++++ +.+..+ |..+.++++|++|+|++|.++.+|+. +.++
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 146 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR-----NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL 146 (452)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCS-----SCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSC
T ss_pred CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCC-----CccCCcChhhccCcccCCEEECCCCcCCccChhhhccc
Confidence 3467899999999999877 47899999999999996 344444 46789999999999999999988775 8899
Q ss_pred CCcCEEEecCCCCccccCc-ccccccccceeecCccCCCcccCC-cCCCCCCCCccCceeeCCCcCCCCcccccccccCC
Q 038430 377 YNLQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQ 454 (677)
Q Consensus 377 ~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~ 454 (677)
++|++|+|++|. +..+|. .+.++++|++|++++|..+..+|. .+..+.+|++|++.++.... +..+..+.
T Consensus 147 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~l~ 218 (452)
T 3zyi_A 147 SKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-------MPNLTPLV 218 (452)
T ss_dssp TTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-------CCCCTTCT
T ss_pred CCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-------cccccccc
Confidence 999999999998 777765 688999999999999888888876 48899999999999887653 34678888
Q ss_pred cCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchh
Q 038430 455 LIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEY 534 (677)
Q Consensus 455 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (677)
+|+.|.+++. .+.......+.++++|+.|++++|....
T Consensus 219 ~L~~L~Ls~N----~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------------------------------- 256 (452)
T 3zyi_A 219 GLEELEMSGN----HFPEIRPGSFHGLSSLKKLWVMNSQVSL-------------------------------------- 256 (452)
T ss_dssp TCCEEECTTS----CCSEECGGGGTTCTTCCEEECTTSCCCE--------------------------------------
T ss_pred cccEEECcCC----cCcccCcccccCccCCCEEEeCCCcCce--------------------------------------
Confidence 9999999884 3334445668889999999998872211
Q ss_pred hhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChh-HhhccCCCeEEEeCCC
Q 038430 535 EERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKW-LTSLTNLSDLKLVFCE 589 (677)
Q Consensus 535 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~ 589 (677)
.....+..+++|+.|+|++|.+..+|.. +..+++|+.|+|++|+
T Consensus 257 -----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 257 -----------IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp -----------ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred -----------ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 1123456678999999999999988755 5689999999999884
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.8e-18 Score=191.56 Aligned_cols=133 Identities=25% Similarity=0.254 Sum_probs=108.9
Q ss_pred ccCCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccchh-hcc
Q 038430 299 NAFGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLPKT-LCE 375 (677)
Q Consensus 299 ~~~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp~~-i~~ 375 (677)
..++..+++|++++|.+..+| .+|.++++|++|++++ +.+..+|+ .|.++++|++|+|++|.++.+|+. |.+
T Consensus 48 ~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~-----N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 48 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-----CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-----CCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred CCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCC-----CcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 345778999999999999887 5799999999999995 45666654 588999999999999999988764 899
Q ss_pred CCCcCEEEecCCCCccccCc-ccccccccceeecCccCCCc-ccCCcCCCCCCCCccCceeeCC
Q 038430 376 LYNLQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLK-YMPIGISKLTSLRTLDKFAVGG 437 (677)
Q Consensus 376 l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~~ 437 (677)
+++|++|++++|. +..+|. .++++++|++|++++|.... .+|..++.+++|++|++.++..
T Consensus 123 L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 123 LSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 9999999999998 777765 58899999999999985332 3567788888888888776543
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.1e-18 Score=183.04 Aligned_cols=224 Identities=18% Similarity=0.249 Sum_probs=183.3
Q ss_pred cCCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccch-hhccC
Q 038430 300 AFGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLPK-TLCEL 376 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l 376 (677)
.++..++.|++++|.+..++ ..|.++++|++|++++ +.+..++ ..|.++++|++|+|++|.++.+|+ .+..+
T Consensus 61 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-----n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 135 (440)
T 3zyj_A 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR-----NHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL 135 (440)
T ss_dssp CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCS-----SCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSC
T ss_pred CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCC-----CcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcc
Confidence 44678999999999998876 7899999999999996 3445554 568999999999999999998877 58999
Q ss_pred CCcCEEEecCCCCccccCc-ccccccccceeecCccCCCcccCC-cCCCCCCCCccCceeeCCCcCCCCcccccccccCC
Q 038430 377 YNLQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQ 454 (677)
Q Consensus 377 ~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~ 454 (677)
++|++|++++|. +..+|. .+..+++|++|++++|..+..+|. .+..+++|++|++.++.... +..+..+.
T Consensus 136 ~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~l~ 207 (440)
T 3zyj_A 136 SKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-------IPNLTPLI 207 (440)
T ss_dssp SSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-------CCCCTTCS
T ss_pred ccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-------ccccCCCc
Confidence 999999999998 767765 688999999999999878888876 58899999999999887653 34578889
Q ss_pred cCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchh
Q 038430 455 LIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEY 534 (677)
Q Consensus 455 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (677)
+|+.|++++. .+.......+.++++|+.|++++|....
T Consensus 208 ~L~~L~Ls~N----~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------------------------------- 245 (440)
T 3zyj_A 208 KLDELDLSGN----HLSAIRPGSFQGLMHLQKLWMIQSQIQV-------------------------------------- 245 (440)
T ss_dssp SCCEEECTTS----CCCEECTTTTTTCTTCCEEECTTCCCCE--------------------------------------
T ss_pred ccCEEECCCC----ccCccChhhhccCccCCEEECCCCceeE--------------------------------------
Confidence 9999999884 3333344568889999999999872211
Q ss_pred hhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChh-HhhccCCCeEEEeCCC
Q 038430 535 EERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKW-LTSLTNLSDLKLVFCE 589 (677)
Q Consensus 535 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~ 589 (677)
.....+..+++|+.|+|++|.+..+|.. +..+++|+.|+|++|+
T Consensus 246 -----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 246 -----------IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -----------ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred -----------EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 1123456779999999999999988755 5689999999999884
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-17 Score=179.83 Aligned_cols=237 Identities=18% Similarity=0.140 Sum_probs=153.0
Q ss_pred CCCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcC
Q 038430 301 FGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQ 380 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~ 380 (677)
++.+++.|++++|.+..+|. .+++|++|++++ +.+..+|. .+++|++|++++|.++.+|. .+++|+
T Consensus 59 l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~-----N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~ 124 (622)
T 3g06_A 59 LPAHITTLVIPDNNLTSLPA---LPPELRTLEVSG-----NQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLC 124 (622)
T ss_dssp CCTTCSEEEECSCCCSCCCC---CCTTCCEEEECS-----CCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCC
T ss_pred hCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCC-----CcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcC
Confidence 34677777777777777765 467777777774 33455665 56777777777777777765 566777
Q ss_pred EEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccc
Q 038430 381 KLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCG 460 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 460 (677)
+|++++|. +..+|.. +++|++|++++| .+..+|.. +.+|+.|++.++.... +. ..+++|+.|.
T Consensus 125 ~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N~l~~-------l~--~~~~~L~~L~ 187 (622)
T 3g06_A 125 KLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPAL---PSELCKLWAYNNQLTS-------LP--MLPSGLQELS 187 (622)
T ss_dssp EEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCSC-------CC--CCCTTCCEEE
T ss_pred EEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCCc---cCCCCEEECCCCCCCC-------Cc--ccCCCCcEEE
Confidence 77777776 6667663 367777777777 45555543 3456666666655442 11 3345666666
Q ss_pred ccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcc
Q 038430 461 IEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRK 540 (677)
Q Consensus 461 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (677)
++++.- ..++ ..+++|+.|++++|....
T Consensus 188 Ls~N~l-~~l~-------~~~~~L~~L~L~~N~l~~-------------------------------------------- 215 (622)
T 3g06_A 188 VSDNQL-ASLP-------TLPSELYKLWAYNNRLTS-------------------------------------------- 215 (622)
T ss_dssp CCSSCC-SCCC-------CCCTTCCEEECCSSCCSS--------------------------------------------
T ss_pred CCCCCC-CCCC-------CccchhhEEECcCCcccc--------------------------------------------
Confidence 665321 1111 123667777777661111
Q ss_pred hhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCc
Q 038430 541 NEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNE 619 (677)
Q Consensus 541 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~ 619 (677)
+. ..+++|+.|++++|.+..+| ..+++|+.|++++| .+..+|. .++ |+.|++++| .++.++..
T Consensus 216 ------l~---~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N-~L~~lp~~ 279 (622)
T 3g06_A 216 ------LP---ALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRN-QLTRLPES 279 (622)
T ss_dssp ------CC---CCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCCSCCGG
T ss_pred ------cC---CCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCC-CCCcCCHH
Confidence 00 12367888888888888777 45688888888888 6667776 566 888888874 56655432
Q ss_pred cccCCCCCCCCCCCCCCCcccCCCccceeeeccccc
Q 038430 620 FLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
...+++|+.|++++++-
T Consensus 280 -------------------l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 280 -------------------LIHLSSETTVNLEGNPL 296 (622)
T ss_dssp -------------------GGGSCTTCEEECCSCCC
T ss_pred -------------------HhhccccCEEEecCCCC
Confidence 25678888888888765
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-19 Score=185.42 Aligned_cols=243 Identities=17% Similarity=0.177 Sum_probs=152.9
Q ss_pred eEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccC-------CCCCcCEEEecCcccc-ccchhh--c
Q 038430 305 VRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVG-------KLMHLKYLNLSELHIE-RLPKTL--C 374 (677)
Q Consensus 305 l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~-------~l~~L~~L~Ls~~~i~-~lp~~i--~ 374 (677)
++.+++.++.+ .+|..+... |+.|+++++.+. ...+|..+. .+++|++|++++|.++ .+|..+ +
T Consensus 45 L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~---~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 45 LEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVR---AARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp CTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEE---EEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred ceeEeeccccc-ccHHHHHHH--Hhhccccccccc---CCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 33444445555 445433332 666666542110 113444343 5677777777777766 566654 6
Q ss_pred cCCCcCEEEecCCCCccccCcccccc-----cccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccc
Q 038430 375 ELYNLQKLDIRGCRNLRELPTGIGKL-----KNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLEC 449 (677)
Q Consensus 375 ~l~~L~~L~L~~~~~l~~lp~~i~~l-----~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 449 (677)
.+++|++|++++|. +..+|..++.+ ++|++|++++|......|..++++++|++|++.++..... ...+..
T Consensus 119 ~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~ 194 (312)
T 1wwl_A 119 TGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE---RGLISA 194 (312)
T ss_dssp CSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH---HHHHHH
T ss_pred cCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc---hHHHHH
Confidence 67777777777776 55556666665 6777777777743333335677777777777766653210 001222
Q ss_pred c--ccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCC
Q 038430 450 L--KNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGG 527 (677)
Q Consensus 450 L--~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (677)
+ ..+++|+.|.+++.. +..........+..+++|+.|++++|......
T Consensus 195 ~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------------------------- 244 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAA----------------------------- 244 (312)
T ss_dssp SCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC-----------------------------
T ss_pred HHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCccc-----------------------------
Confidence 3 566777777777642 23333443444567899999999988221100
Q ss_pred ccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceee
Q 038430 528 KVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLE 606 (677)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~ 606 (677)
....+..+++|+.|++++|.+..+|.++. ++|++|++++| .++.+|.+..++ |+.|+
T Consensus 245 -------------------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~ 302 (312)
T 1wwl_A 245 -------------------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLS 302 (312)
T ss_dssp -------------------CCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEE
T ss_pred -------------------chhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEe
Confidence 01223446899999999999999998876 89999999999 777778899999 99999
Q ss_pred ccc
Q 038430 607 LCH 609 (677)
Q Consensus 607 l~~ 609 (677)
+++
T Consensus 303 L~~ 305 (312)
T 1wwl_A 303 LKG 305 (312)
T ss_dssp CTT
T ss_pred ccC
Confidence 997
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-19 Score=183.63 Aligned_cols=240 Identities=14% Similarity=0.099 Sum_probs=149.9
Q ss_pred ccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccc
Q 038430 322 IHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKL 400 (677)
Q Consensus 322 ~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l 400 (677)
+..+++|++|++++ +.+..++ ..++.+++|++|++++|.++.+++ +..+++|++|++++|. +..+|. +
T Consensus 30 ~~~~~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~----~ 98 (317)
T 3o53_A 30 RQSAWNVKELDLSG-----NPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----G 98 (317)
T ss_dssp HTTGGGCSEEECTT-----SCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEEE----C
T ss_pred hccCCCCCEEECcC-----CccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-cccccC----C
Confidence 44456777777775 2333333 456777777777777777765554 6777777777777776 555442 3
Q ss_pred cccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhc-c
Q 038430 401 KNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLEL-K 479 (677)
Q Consensus 401 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l-~ 479 (677)
++|++|++++|. +..++.. .+++|++|++.++... ......+..+++|+.|++++.. +.......+ .
T Consensus 99 ~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~ 166 (317)
T 3o53_A 99 PSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKIT-----MLRDLDEGCRSRVQYLDLKLNE----IDTVNFAELAA 166 (317)
T ss_dssp TTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCC-----SGGGBCTGGGSSEEEEECTTSC----CCEEEGGGGGG
T ss_pred CCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCC-----CccchhhhccCCCCEEECCCCC----CCcccHHHHhh
Confidence 677777777774 3344322 3566777777666554 2233455666777777776632 222112222 3
Q ss_pred CCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcE
Q 038430 480 NMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEK 559 (677)
Q Consensus 480 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 559 (677)
.+++|+.|++++|.... ......+++|+.
T Consensus 167 ~l~~L~~L~L~~N~l~~---------------------------------------------------~~~~~~l~~L~~ 195 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYD---------------------------------------------------VKGQVVFAKLKT 195 (317)
T ss_dssp GTTTCCEEECTTSCCCE---------------------------------------------------EECCCCCTTCCE
T ss_pred ccCcCCEEECCCCcCcc---------------------------------------------------cccccccccCCE
Confidence 56788888887771111 012234678888
Q ss_pred EEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccce-EeCCccccCCCCCCCCCCCCCC
Q 038430 560 LWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVK-RVGNEFLEIEESEDDPSSSSSS 636 (677)
Q Consensus 560 L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~-~i~~~~~~~~~~~~~~~~~~~~ 636 (677)
|++++|.+..+|..+..+++|++|++++| .+..+|. +..++ |+.|++++++ +. .....+
T Consensus 196 L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~-~~~~~~~~~---------------- 257 (317)
T 3o53_A 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG-FHCGTLRDF---------------- 257 (317)
T ss_dssp EECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC-CBHHHHHHH----------------
T ss_pred EECCCCcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC-ccCcCHHHH----------------
Confidence 88888888888877888888888888888 5556664 67788 8888888744 32 111122
Q ss_pred CcccCCCccceeeeccccc
Q 038430 637 SSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 637 ~~~~~~~~L~~L~l~~~~~ 655 (677)
...+++|+.|.+.++..
T Consensus 258 --~~~~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 258 --FSKNQRVQTVAKQTVKK 274 (317)
T ss_dssp --HHTCHHHHHHHHHHHHH
T ss_pred --HhccccceEEECCCchh
Confidence 24577777777775554
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-18 Score=185.24 Aligned_cols=140 Identities=17% Similarity=0.123 Sum_probs=65.7
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCc-------------CEEEecCccccc
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHL-------------KYLNLSELHIER 368 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L-------------~~L~Ls~~~i~~ 368 (677)
...++.+.++++.++.+|..+.++++|++|++++ +...+.+|..++.+.+| ++|++++|.++.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~----n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAW----SEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp ------------------------CCHHHHHHHH----HHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccC----CcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 4567888888888888888888888888888876 33334667777766654 777777777776
Q ss_pred cchhhccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCccccc
Q 038430 369 LPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLE 448 (677)
Q Consensus 369 lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 448 (677)
+|.. .++|++|++++|. +..+|.. +++|++|++++| .+..+|.. .++|++|++.++.... +.
T Consensus 86 lp~~---~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n~l~~-------lp 147 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNNQLEK-------LP 147 (454)
T ss_dssp CCSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSSCCSS-------CC
T ss_pred CCCC---cCCCCEEEccCCc-CCccccc---cCCCcEEECCCC-ccCcccCC---CCCCCEEECcCCCCCC-------Cc
Confidence 6652 3567777777666 5556642 245566666655 23333321 1455555555544331 12
Q ss_pred ccccCCcCCcccccC
Q 038430 449 CLKNFQLIRKCGIEG 463 (677)
Q Consensus 449 ~L~~l~~L~~L~i~~ 463 (677)
.++.+++|+.|.+++
T Consensus 148 ~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDN 162 (454)
T ss_dssp CCTTCTTCCEEECCS
T ss_pred ccCCCCCCCEEECCC
Confidence 355555555555554
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-17 Score=181.52 Aligned_cols=210 Identities=16% Similarity=0.096 Sum_probs=122.8
Q ss_pred cccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccce
Q 038430 327 RLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRS 405 (677)
Q Consensus 327 ~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 405 (677)
+|++|++++ +.+..+ |..++.+++|++|+|++|.++..++ ++.+++|++|+|++|. +..+|. .++|++
T Consensus 35 ~L~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~ 103 (487)
T 3oja_A 35 NVKELDLSG-----NPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIET 103 (487)
T ss_dssp GCCEEECCS-----SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCE
T ss_pred CccEEEeeC-----CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCE
Confidence 666666664 222333 3456666666666666666664443 6666666666666665 554443 256666
Q ss_pred eecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhcc-CCccc
Q 038430 406 LLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELK-NMENL 484 (677)
Q Consensus 406 L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~-~~~~L 484 (677)
|++++|. +..+|. ..+++|+.|++.++... ......+..+++|+.|++++.. +....+..+. .+++|
T Consensus 104 L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 104 LHAANNN-ISRVSC--SRGQGKKNIYLANNKIT-----MLRDLDEGCRSRVQYLDLKLNE----IDTVNFAELAASSDTL 171 (487)
T ss_dssp EECCSSC-CCCEEE--CCCSSCEEEECCSSCCC-----SGGGBCGGGGSSEEEEECTTSC----CCEEEGGGGGGGTTTC
T ss_pred EECcCCc-CCCCCc--cccCCCCEEECCCCCCC-----CCCchhhcCCCCCCEEECCCCC----CCCcChHHHhhhCCcc
Confidence 6666663 333332 13455666666655544 2233345556666666666532 2222222332 56777
Q ss_pred CceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEec
Q 038430 485 LHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILF 564 (677)
Q Consensus 485 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 564 (677)
+.|++++|.... ......+++|+.|+|++
T Consensus 172 ~~L~Ls~N~l~~---------------------------------------------------~~~~~~l~~L~~L~Ls~ 200 (487)
T 3oja_A 172 EHLNLQYNFIYD---------------------------------------------------VKGQVVFAKLKTLDLSS 200 (487)
T ss_dssp CEEECTTSCCCE---------------------------------------------------EECCCCCTTCCEEECCS
T ss_pred cEEecCCCcccc---------------------------------------------------ccccccCCCCCEEECCC
Confidence 777777661111 01223467788888888
Q ss_pred CCCCCCChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccc
Q 038430 565 NGGNILPKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLK 611 (677)
Q Consensus 565 ~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~ 611 (677)
|.+..+|+.+..+++|+.|++++| .+..+|. ++.++ |+.|++++++
T Consensus 201 N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 201 NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred CCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCC
Confidence 887777777778888888888877 4555554 66777 8888887743
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-16 Score=168.88 Aligned_cols=274 Identities=16% Similarity=0.152 Sum_probs=133.0
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
+.+++.|++++|.+..+| .+..+++|++|++++| .+..+|..+ .+|++|++++|.++.+| .++++++|++
T Consensus 130 ~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N-----~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~ 199 (454)
T 1jl5_A 130 PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN-----SLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTA 199 (454)
T ss_dssp CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-----CCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC-----cCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCE
Confidence 356666666666666666 4666666666666642 233344322 36666666666666655 4666666666
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++++|. +..+|... ++|++|++++| .+..+| .++.+++|++|++.++.....+ . .+.+|+.|.+
T Consensus 200 L~l~~N~-l~~l~~~~---~~L~~L~l~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~l~-------~--~~~~L~~L~l 264 (454)
T 1jl5_A 200 IYADNNS-LKKLPDLP---LSLESIVAGNN-ILEELP-ELQNLPFLTTIYADNNLLKTLP-------D--LPPSLEALNV 264 (454)
T ss_dssp EECCSSC-CSSCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSCC-------S--CCTTCCEEEC
T ss_pred EECCCCc-CCcCCCCc---CcccEEECcCC-cCCccc-ccCCCCCCCEEECCCCcCCccc-------c--cccccCEEEC
Confidence 6666665 44455422 35666666666 344555 3666666666666655443211 0 1244555555
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcch
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKN 541 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (677)
++..- ..++ ...++|+.|++++|.... ...... ...+.......
T Consensus 265 ~~N~l-~~l~-------~~~~~L~~L~ls~N~l~~---------------------l~~~~~-------~L~~L~l~~N~ 308 (454)
T 1jl5_A 265 RDNYL-TDLP-------ELPQSLTFLDVSENIFSG---------------------LSELPP-------NLYYLNASSNE 308 (454)
T ss_dssp CSSCC-SCCC-------CCCTTCCEEECCSSCCSE---------------------ESCCCT-------TCCEEECCSSC
T ss_pred CCCcc-cccC-------cccCcCCEEECcCCccCc---------------------ccCcCC-------cCCEEECcCCc
Confidence 54321 1111 012456666665551110 000000 00000000000
Q ss_pred hhHHHHhhhcCC-CCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEe---
Q 038430 542 EKDEQLLEALQP-PLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRV--- 616 (677)
Q Consensus 542 ~~~~~~~~~l~~-~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i--- 616 (677)
+..+.. +++|+.|++++|.+..+|.+ +++|++|++++| .+..+|. .++ |+.|+++++ .++.+
T Consensus 309 ------l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~N-~l~~l~~i 375 (454)
T 1jl5_A 309 ------IRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYN-PLREFPDI 375 (454)
T ss_dssp ------CSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCSSCCCC
T ss_pred ------CCcccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCC-ccccccc--hhhhccEEECCCC-CCCcCCCC
Confidence 011222 35889999999988888764 588999999988 6667877 467 999999874 44442
Q ss_pred CCccccCCCCCCCCCCCCCCCcccCCCccceeeeccccc
Q 038430 617 GNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
+..+.. ...+.+.|..+. .+++|+.|++++++-
T Consensus 376 p~~l~~---L~~n~~~~~i~~---~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 376 PESVED---LRMNSHLAEVPE---LPQNLKQLHVETNPL 408 (454)
T ss_dssp CTTCCE---EECCC-------------------------
T ss_pred hHHHHh---hhhccccccccc---ccCcCCEEECCCCcC
Confidence 222110 111223333332 347889999888765
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.3e-19 Score=180.50 Aligned_cols=242 Identities=12% Similarity=0.038 Sum_probs=187.3
Q ss_pred CCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcC
Q 038430 302 GGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQ 380 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~ 380 (677)
..+++.|++++|.+..++ ..+..+++|++|++++ +.+..+++ +..+++|++|++++|.++.+|. .++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-----n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~ 102 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS-----NVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIE 102 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTT-----SCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCC-----CcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcC
Confidence 457999999999998776 6899999999999996 34444444 8999999999999999987763 48999
Q ss_pred EEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCccccccc-ccCCcCCcc
Q 038430 381 KLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECL-KNFQLIRKC 459 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L-~~l~~L~~L 459 (677)
+|++++|. +..++. ..+++|++|++++|......|..++.+++|++|++.++.... .....+ ..+++|+.|
T Consensus 103 ~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 103 TLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-----VNFAELAASSDTLEHL 174 (317)
T ss_dssp EEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE-----EEGGGGGGGTTTCCEE
T ss_pred EEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc-----ccHHHHhhccCcCCEE
Confidence 99999998 766664 347899999999996444445678899999999999887653 233444 478889999
Q ss_pred cccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhc
Q 038430 460 GIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRR 539 (677)
Q Consensus 460 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (677)
.+++..- . .. .....+++|+.|++++|....
T Consensus 175 ~L~~N~l-~---~~--~~~~~l~~L~~L~Ls~N~l~~------------------------------------------- 205 (317)
T 3o53_A 175 NLQYNFI-Y---DV--KGQVVFAKLKTLDLSSNKLAF------------------------------------------- 205 (317)
T ss_dssp ECTTSCC-C---EE--ECCCCCTTCCEEECCSSCCCE-------------------------------------------
T ss_pred ECCCCcC-c---cc--ccccccccCCEEECCCCcCCc-------------------------------------------
Confidence 9987532 1 11 223458999999999882111
Q ss_pred chhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCC-CcCCC-CCCcc-cceeeccccccceEe
Q 038430 540 KNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENC-EQLPP-LGKLP-LEKLELCHLKSVKRV 616 (677)
Q Consensus 540 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~-~~l~~-l~~l~-L~~L~l~~~~~l~~i 616 (677)
+...+..+++|+.|++++|.+..+|..+..+++|+.|++++|+.. ..+|. ++.++ |+.|++.+++.++..
T Consensus 206 -------l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 206 -------MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp -------ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred -------chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 222345678999999999999999999999999999999999544 34443 67889 999999987777654
Q ss_pred C
Q 038430 617 G 617 (677)
Q Consensus 617 ~ 617 (677)
.
T Consensus 279 ~ 279 (317)
T 3o53_A 279 N 279 (317)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-18 Score=175.36 Aligned_cols=250 Identities=16% Similarity=0.130 Sum_probs=183.9
Q ss_pred ccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccc--ccchhhc-------cCCCcCEEEecCCCCccc
Q 038430 322 IHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE--RLPKTLC-------ELYNLQKLDIRGCRNLRE 392 (677)
Q Consensus 322 ~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~--~lp~~i~-------~l~~L~~L~L~~~~~l~~ 392 (677)
++..++|+.|++++ +.+ .+|..+... |+.|++++|.+. .+|..+. ++++|++|++++|.....
T Consensus 39 ~~~~~~L~~l~l~~-----n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 110 (312)
T 1wwl_A 39 YGGGRSLEYLLKRV-----DTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT 110 (312)
T ss_dssp EEEEEECTTHHHHC-----CTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC
T ss_pred EccCCCceeEeecc-----ccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch
Confidence 44566788888886 333 778766544 999999999985 5677666 799999999999995557
Q ss_pred cCccc--ccccccceeecCccCCCcccCCcCCCC-----CCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCcc
Q 038430 393 LPTGI--GKLKNMRSLLNGLTCSLKYMPIGISKL-----TSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLS 465 (677)
Q Consensus 393 lp~~i--~~l~~L~~L~l~~~~~~~~~p~~i~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~ 465 (677)
+|..+ +.+++|++|++++|. +..+|..++.+ ++|++|++.++... ......+..+++|+.|.+++..
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSL-----NFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCC-----CCCTTTCCCCSSCCEEECCSCT
T ss_pred hHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCc-----cchHHHhccCCCCCEEECCCCC
Confidence 88876 899999999999995 55558777776 89999999998876 3344678899999999998843
Q ss_pred CCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHH
Q 038430 466 NVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDE 545 (677)
Q Consensus 466 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (677)
-...........+..+++|+.|++++|.... ..
T Consensus 185 l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------------------------------------~~ 217 (312)
T 1wwl_A 185 ELGERGLISALCPLKFPTLQVLALRNAGMET-----------------------------------------------PS 217 (312)
T ss_dssp TCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-----------------------------------------------HH
T ss_pred cCcchHHHHHHHhccCCCCCEEECCCCcCcc-----------------------------------------------hH
Confidence 2111111112223788999999999882111 11
Q ss_pred HHh-hhcCCCCCCcEEEEecCCCCCCC--hhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCccc
Q 038430 546 QLL-EALQPPLNVEKLWILFNGGNILP--KWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFL 621 (677)
Q Consensus 546 ~~~-~~l~~~~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~~ 621 (677)
.+. ..+..+++|+.|++++|.+...+ ..+..+++|++|++++| .++.+|.--. + |+.|++++ +.++.++.
T Consensus 218 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~-~~L~~L~Ls~-N~l~~~p~--- 291 (312)
T 1wwl_A 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP-AKLSVLDLSY-NRLDRNPS--- 291 (312)
T ss_dssp HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC-SEEEEEECCS-SCCCSCCC---
T ss_pred HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc-CCceEEECCC-CCCCCChh---
Confidence 222 22345689999999999988754 34557899999999999 5668876222 8 99999997 55665532
Q ss_pred cCCCCCCCCCCCCCCCcccCCCccceeeeccccc
Q 038430 622 EIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
...+++|++|++++++-
T Consensus 292 -----------------~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 292 -----------------PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp -----------------TTTSCEEEEEECTTCTT
T ss_pred -----------------HhhCCCCCEEeccCCCC
Confidence 25789999999998763
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-17 Score=164.87 Aligned_cols=177 Identities=19% Similarity=0.255 Sum_probs=143.7
Q ss_pred cCCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCcc-cccc-chhhcc
Q 038430 300 AFGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELH-IERL-PKTLCE 375 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~-i~~l-p~~i~~ 375 (677)
.++.+++.|+++++.+..++ ..+..+++|++|++++ +.+..+ |..+..+++|++|++++|. +..+ |..+..
T Consensus 29 ~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~-----n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~ 103 (285)
T 1ozn_A 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHS-----NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103 (285)
T ss_dssp TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-----SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCC-----CccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC
Confidence 35779999999999998887 5789999999999996 334444 6778999999999999997 8877 667999
Q ss_pred CCCcCEEEecCCCCcccc-CcccccccccceeecCccCCCcccCC-cCCCCCCCCccCceeeCCCcCCCCcccccccccC
Q 038430 376 LYNLQKLDIRGCRNLREL-PTGIGKLKNMRSLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNF 453 (677)
Q Consensus 376 l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l 453 (677)
+++|++|++++|. +..+ |..+..+++|++|++++|. +..+|. .++.+++|++|++.++.... .....+..+
T Consensus 104 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l 176 (285)
T 1ozn_A 104 LGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISS-----VPERAFRGL 176 (285)
T ss_dssp CTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCE-----ECTTTTTTC
T ss_pred CcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccc-----cCHHHhcCc
Confidence 9999999999998 5555 6678999999999999995 555554 58899999999999887652 233457788
Q ss_pred CcCCcccccCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 454 QLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 454 ~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
++|+.|.+++.. +.......+..+++|+.|++++|
T Consensus 177 ~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 177 HSLDRLLLHQNR----VAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp TTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSS
T ss_pred cccCEEECCCCc----ccccCHhHccCcccccEeeCCCC
Confidence 999999998743 33333456788899999999988
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-18 Score=187.03 Aligned_cols=235 Identities=12% Similarity=0.037 Sum_probs=184.1
Q ss_pred CCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcC
Q 038430 302 GGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQ 380 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~ 380 (677)
+.+++.|++++|.+..++ ..+..+++|++|++++ +.+...++ ++.+++|++|+|++|.++.+|. .++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-----N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~ 102 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS-----NVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIE 102 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTT-----SCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeC-----CCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcC
Confidence 448999999999998775 6899999999999996 33444443 8999999999999999988764 38999
Q ss_pred EEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccc-cCCcCCcc
Q 038430 381 KLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLK-NFQLIRKC 459 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~-~l~~L~~L 459 (677)
+|++++|. +..+|. ..+++|+.|++++|......|..++.+++|++|++.++... ...+..+. .+++|+.|
T Consensus 103 ~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 103 TLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-----TVNFAELAASSDTLEHL 174 (487)
T ss_dssp EEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC-----EEEGGGGGGGTTTCCEE
T ss_pred EEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC-----CcChHHHhhhCCcccEE
Confidence 99999998 666655 35789999999999655555778899999999999988776 33445554 78899999
Q ss_pred cccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhc
Q 038430 460 GIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRR 539 (677)
Q Consensus 460 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (677)
+++++.- ... ..+..+++|+.|++++|....
T Consensus 175 ~Ls~N~l----~~~--~~~~~l~~L~~L~Ls~N~l~~------------------------------------------- 205 (487)
T 3oja_A 175 NLQYNFI----YDV--KGQVVFAKLKTLDLSSNKLAF------------------------------------------- 205 (487)
T ss_dssp ECTTSCC----CEE--ECCCCCTTCCEEECCSSCCCE-------------------------------------------
T ss_pred ecCCCcc----ccc--cccccCCCCCEEECCCCCCCC-------------------------------------------
Confidence 9988532 221 224468999999999882111
Q ss_pred chhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCC-CcCCC-CCCcc-cceeecccc
Q 038430 540 KNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENC-EQLPP-LGKLP-LEKLELCHL 610 (677)
Q Consensus 540 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~-~~l~~-l~~l~-L~~L~l~~~ 610 (677)
++..+..+++|+.|+|++|.+..+|.++..+++|+.|++++|+.. ..+|. ++.++ |+.|.+..+
T Consensus 206 -------~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 206 -------MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp -------ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecccc
Confidence 222355678999999999999999999999999999999999544 34443 67788 888888643
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=171.81 Aligned_cols=140 Identities=16% Similarity=0.134 Sum_probs=109.8
Q ss_pred EecCCCcccccccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccch-hhccCCCcCEEEecCCC
Q 038430 311 KFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCR 388 (677)
Q Consensus 311 ~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~ 388 (677)
.+.++.++|..+. +++++|++++ +.+..+| ..|.++++|++|+|++|.|+.+|+ .|.++++|++|+|++|+
T Consensus 39 ~~~~l~~vP~~lp--~~~~~LdLs~-----N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 39 MELNFYKIPDNLP--FSTKNLDLSF-----NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TTSCCSSCCSSSC--TTCCEEECTT-----SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCCCcCccCCCCC--cCCCEEEeeC-----CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 3345677886553 4799999995 5567776 468999999999999999998876 58999999999999998
Q ss_pred CccccCc-ccccccccceeecCccCCCcccCC-cCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 389 NLRELPT-GIGKLKNMRSLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 389 ~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
+..+|. .+.+|++|++|++++|. +..+|. .++++++|++|++.++.... ......+..+++|+.|.+++
T Consensus 112 -l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~----~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 112 -IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQS----FKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp -CCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCC----CCCCGGGGGCTTCCEEECCS
T ss_pred -CCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCcccc----CCCchhhccchhhhhhcccC
Confidence 888886 58999999999999995 556664 58999999999999887653 22334455566666655544
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-16 Score=158.18 Aligned_cols=199 Identities=16% Similarity=0.145 Sum_probs=100.2
Q ss_pred cccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccch-hhccCCCcCEEEecCCCCccccC-ccccccccc
Q 038430 327 RLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELP-TGIGKLKNM 403 (677)
Q Consensus 327 ~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L 403 (677)
+|++|++++ +.+..++. .+..+++|++|++++|.++.+++ .+.++++|++|++++|. +..++ ..+..+++|
T Consensus 29 ~l~~L~ls~-----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 29 STKNLDLSF-----NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSL 102 (276)
T ss_dssp TCCEEECTT-----CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTC
T ss_pred CccEEECCC-----CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccc
Confidence 456666653 22333332 45555666666666665554443 35556666666666655 33333 345556666
Q ss_pred ceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcc
Q 038430 404 RSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMEN 483 (677)
Q Consensus 404 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~ 483 (677)
++|++++|......+..++++++|++|++.++.... ......+..+++|+.|.+++.. +.......+..+.+
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~l~~~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS----FKLPEYFSNLTNLEHLDLSSNK----IQSIYCTDLRVLHQ 174 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC----CCCCGGGGGCTTCCEEECCSSC----CCEECGGGGHHHHT
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccce----ecCchhhccCCCCCEEECCCCC----CCcCCHHHhhhhhh
Confidence 666666553222222245555556665555544332 1123344455555555554421 11111112222333
Q ss_pred cC----ceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcE
Q 038430 484 LL----HLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEK 559 (677)
Q Consensus 484 L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 559 (677)
|+ .|++++|.... +........+|+.
T Consensus 175 L~~l~l~L~ls~n~l~~--------------------------------------------------~~~~~~~~~~L~~ 204 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNF--------------------------------------------------IQPGAFKEIRLKE 204 (276)
T ss_dssp CTTCCEEEECCSSCCCE--------------------------------------------------ECTTSSCSCCEEE
T ss_pred ccccceeeecCCCcccc--------------------------------------------------cCccccCCCcccE
Confidence 33 55555541110 1111122347888
Q ss_pred EEEecCCCCCCChh-HhhccCCCeEEEeCCC
Q 038430 560 LWILFNGGNILPKW-LTSLTNLSDLKLVFCE 589 (677)
Q Consensus 560 L~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~ 589 (677)
|++++|.+..+|.. +..+++|+.|++++|+
T Consensus 205 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 205 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred EECCCCceeecCHhHhcccccccEEEccCCc
Confidence 88888887777765 3578888888888774
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-15 Score=168.88 Aligned_cols=251 Identities=18% Similarity=0.124 Sum_probs=192.6
Q ss_pred CceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEE
Q 038430 303 GKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKL 382 (677)
Q Consensus 303 ~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L 382 (677)
..++.|+++++.+..+|..+. ++|++|++++ +.+..+|. .+++|++|+|++|.++.+|. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~-----N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPD-----NNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECS-----CCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEE
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecC-----CCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEE
Confidence 357899999999999997665 8999999996 44567776 57899999999999999987 78999999
Q ss_pred EecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccccc
Q 038430 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIE 462 (677)
Q Consensus 383 ~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~ 462 (677)
++++|. +..+|. .+++|+.|++++| .+..+|.. +++|++|++.++.....+ . .+.+|+.|.+.
T Consensus 107 ~Ls~N~-l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N~l~~l~------~---~~~~L~~L~L~ 169 (622)
T 3g06_A 107 SIFSNP-LTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLASLP------A---LPSELCKLWAY 169 (622)
T ss_dssp EECSCC-CCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCSCCC------C---CCTTCCEEECC
T ss_pred ECcCCc-CCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECcCCcCCCcC------C---ccCCCCEEECC
Confidence 999998 888887 6789999999999 56778865 478999999887665311 1 24567777776
Q ss_pred CccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchh
Q 038430 463 GLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNE 542 (677)
Q Consensus 463 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (677)
+..- ..++ ..+++|+.|++++|....
T Consensus 170 ~N~l-~~l~-------~~~~~L~~L~Ls~N~l~~---------------------------------------------- 195 (622)
T 3g06_A 170 NNQL-TSLP-------MLPSGLQELSVSDNQLAS---------------------------------------------- 195 (622)
T ss_dssp SSCC-SCCC-------CCCTTCCEEECCSSCCSC----------------------------------------------
T ss_pred CCCC-CCCc-------ccCCCCcEEECCCCCCCC----------------------------------------------
Confidence 6321 2221 346899999999872111
Q ss_pred hHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCccc
Q 038430 543 KDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFL 621 (677)
Q Consensus 543 ~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~~ 621 (677)
+. ..+++|+.|++++|.+..+|. .+++|+.|++++| .+..+| ..++ |+.|+++++ .++.++
T Consensus 196 ----l~---~~~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N-~L~~lp---- 257 (622)
T 3g06_A 196 ----LP---TLPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGN-RLTSLP---- 257 (622)
T ss_dssp ----CC---CCCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCC----
T ss_pred ----CC---CccchhhEEECcCCcccccCC---CCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCC-CCCcCC----
Confidence 00 124789999999999998885 3589999999998 777788 5668 999999984 566552
Q ss_pred cCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 622 EIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
..+++|+.|++++|.-..++ ..+..+|+|++|+|
T Consensus 258 ------------------~~~~~L~~L~Ls~N~L~~lp----~~l~~l~~L~~L~L 291 (622)
T 3g06_A 258 ------------------MLPSGLLSLSVYRNQLTRLP----ESLIHLSSETTVNL 291 (622)
T ss_dssp ------------------CCCTTCCEEECCSSCCCSCC----GGGGGSCTTCEEEC
T ss_pred ------------------cccccCcEEeCCCCCCCcCC----HHHhhccccCEEEe
Confidence 25789999999998656454 23447899998875
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=154.78 Aligned_cols=195 Identities=17% Similarity=0.072 Sum_probs=111.7
Q ss_pred CceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 303 GKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 303 ~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
.+++.+++.++++..+|..+. ++++.|++++ +.+..+ |..+..+++|++|++++|.++.+|.. +.+++|++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~-----N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSE-----NLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC--TTCCEEECTT-----SCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred CCccEEECCCCCCCcCCCCCC--CCCCEEEcCC-----CcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 345566666666666654443 4566666664 222332 34456666666666666666655443 55666666
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCG 460 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 460 (677)
|++++|. +..+|..+..+++|++|++++|. +..+| ..++.+++|++|++.++....
T Consensus 82 L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~--------------------- 138 (290)
T 1p9a_G 82 LDLSHNQ-LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKT--------------------- 138 (290)
T ss_dssp EECCSSC-CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCC---------------------
T ss_pred EECCCCc-CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCc---------------------
Confidence 6666665 55666656666666666666663 33333 335555566655555443321
Q ss_pred ccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcc
Q 038430 461 IEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRK 540 (677)
Q Consensus 461 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (677)
.....+..+++|+.|+++.|.....
T Consensus 139 ------------~~~~~~~~l~~L~~L~L~~N~l~~l------------------------------------------- 163 (290)
T 1p9a_G 139 ------------LPPGLLTPTPKLEKLSLANNNLTEL------------------------------------------- 163 (290)
T ss_dssp ------------CCTTTTTTCTTCCEEECTTSCCSCC-------------------------------------------
T ss_pred ------------cChhhcccccCCCEEECCCCcCCcc-------------------------------------------
Confidence 0111234456666666665511110
Q ss_pred hhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCC
Q 038430 541 NEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCE 589 (677)
Q Consensus 541 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~ 589 (677)
....+..+++|+.|+|++|.+..+|.++..+++|+.|+|.+|+
T Consensus 164 ------~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 164 ------PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ------CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 0112345678888888888888888888777888888888774
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-16 Score=159.52 Aligned_cols=124 Identities=20% Similarity=0.210 Sum_probs=94.9
Q ss_pred ccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCccccccc
Q 038430 322 IHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLK 401 (677)
Q Consensus 322 ~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~ 401 (677)
...+++|+.|++++ +.+..+| .+..+++|++|++++|.++.+|+ +..+++|++|++++|. +..+| .+..++
T Consensus 37 ~~~l~~L~~L~l~~-----~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~ 107 (308)
T 1h6u_A 37 QADLDGITTLSAFG-----TGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQ 107 (308)
T ss_dssp HHHHHTCCEEECTT-----SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCT
T ss_pred HHHcCCcCEEEeeC-----CCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCC
Confidence 44578899999985 3455565 57889999999999999998887 9999999999999998 77776 488999
Q ss_pred ccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 402 NMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 402 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
+|++|++++|. +..+|. +..+++|++|++.++.... +..+..+++|+.|.+++
T Consensus 108 ~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~-------~~~l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 108 SIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITN-------ISPLAGLTNLQYLSIGN 160 (308)
T ss_dssp TCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCC-------CGGGGGCTTCCEEECCS
T ss_pred CCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCccCc-------CccccCCCCccEEEccC
Confidence 99999999994 555654 7888888888887765442 12244555555555544
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-16 Score=161.21 Aligned_cols=125 Identities=18% Similarity=0.262 Sum_probs=102.9
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+++.|++.++.+..++ .+..+++|++|++++ +.+..++. +..+++|++|++++|.++.+| .+..+++|++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~-----n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKD-----NQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCS-----SCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccC-----CcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 457889999999888887 688899999999985 44556665 888999999999999988875 6888999999
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCC
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~ 438 (677)
|++++|. +..+|. +..+++|++|++++|. +..++. ++.+++|+.|++.++...
T Consensus 112 L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 112 LDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp EECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred EECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCC
Confidence 9999998 777776 8899999999999984 555554 788889999988776544
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=158.96 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=56.3
Q ss_pred CCCCcEEEEec-CCCCCCChh-HhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCccccCCCCCCCC
Q 038430 554 PLNVEKLWILF-NGGNILPKW-LTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDP 630 (677)
Q Consensus 554 ~~~L~~L~l~~-~~~~~lp~~-~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 630 (677)
..+|++|++.+ |.+..+|.. +..+++|++|+|++| .++.+|. +.+. |+.|.+.++++++.++.
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~-~~~~~L~~L~~l~~~~l~~lP~------------ 241 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS-YGLENLKKLRARSTYNLKKLPT------------ 241 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS-SSCTTCCEEECTTCTTCCCCCC------------
T ss_pred ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh-hhhccchHhhhccCCCcCcCCC------------
Confidence 45788888864 666778754 578899999999888 7778875 3355 77777777777776642
Q ss_pred CCCCCCCcccCCCccceeeecc
Q 038430 631 SSSSSSSSVTAFPKVKSLEIKE 652 (677)
Q Consensus 631 ~~~~~~~~~~~~~~L~~L~l~~ 652 (677)
...|++|+.+.+.+
T Consensus 242 --------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 242 --------LEKLVALMEASLTY 255 (350)
T ss_dssp --------TTTCCSCCEEECSC
T ss_pred --------chhCcChhhCcCCC
Confidence 35688888888864
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.62 E-value=5.7e-18 Score=183.99 Aligned_cols=179 Identities=14% Similarity=0.018 Sum_probs=85.2
Q ss_pred CceEEEEEEecCCC-----cccccccCCCcccEEEeCCCCCCCCCCcc-CCccc-CCCC----CcCEEEecCcccc----
Q 038430 303 GKVRHLGLKFKGGA-----SFPMSIHGLNRLRTLLIDDESPPNSSLDK-IPENV-GKLM----HLKYLNLSELHIE---- 367 (677)
Q Consensus 303 ~~l~~L~l~~~~~~-----~~p~~~~~l~~L~~L~l~~~~l~~~~~~~-lp~~~-~~l~----~L~~L~Ls~~~i~---- 367 (677)
.+++.|++++|.+. .++..+..+++|++|++++|. +.. .+..+ ..+. +|++|++++|.++
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-----LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-----CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-----CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 35666666666654 334555566666666666422 211 11111 1222 4666666666655
Q ss_pred -ccchhhccCCCcCEEEecCCCCccc-cCcccc-----cccccceeecCccCCCc----ccCCcCCCCCCCCccCceeeC
Q 038430 368 -RLPKTLCELYNLQKLDIRGCRNLRE-LPTGIG-----KLKNMRSLLNGLTCSLK----YMPIGISKLTSLRTLDKFAVG 436 (677)
Q Consensus 368 -~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~i~-----~l~~L~~L~l~~~~~~~----~~p~~i~~l~~L~~L~l~~~~ 436 (677)
.+|..+.++++|++|++++|. +.. .+..+. ..++|++|++++|.... .++..+..+++|++|++.++.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 345556666666666666665 321 121111 23456666666663222 123334445566666665544
Q ss_pred CCcCCCCcccccccc-----cCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 437 GGVDGGSTCRLECLK-----NFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 437 ~~~~~~~~~~~~~L~-----~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
.. ...+..+. ...+|+.|.++++.-...........+..+++|+.|++++|
T Consensus 182 i~-----~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 182 IN-----EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp CH-----HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred cc-----hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 32 11122221 13355566665543222111223334445566666666655
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-18 Score=186.64 Aligned_cols=333 Identities=16% Similarity=0.052 Sum_probs=193.7
Q ss_pred CCceEEEEEEecCCCccc--ccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccc-cchhh-ccCC
Q 038430 302 GGKVRHLGLKFKGGASFP--MSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIER-LPKTL-CELY 377 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p--~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~-lp~~i-~~l~ 377 (677)
+.+++.|+++++.+...+ ..+..+++|++|++++|.+.......++..+..+++|++|++++|.+.. .+..+ ..+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 567899999999886544 3377889999999997433222223567778889999999999999874 23333 3455
Q ss_pred ----CcCEEEecCCCCcc-----ccCcccccccccceeecCccCCCcccCCc-----CCCCCCCCccCceeeCCCcCCCC
Q 038430 378 ----NLQKLDIRGCRNLR-----ELPTGIGKLKNMRSLLNGLTCSLKYMPIG-----ISKLTSLRTLDKFAVGGGVDGGS 443 (677)
Q Consensus 378 ----~L~~L~L~~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-----i~~l~~L~~L~l~~~~~~~~~~~ 443 (677)
+|++|++++|. +. .+|..+..+++|++|++++|......+.. .....+|++|++.++...... .
T Consensus 82 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-~ 159 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS-C 159 (461)
T ss_dssp STTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG-H
T ss_pred hCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH-H
Confidence 79999999998 54 56888999999999999999632222222 223567999999887655210 0
Q ss_pred cccccccccCCcCCcccccCccCCCChhHHHHhhcc-----CCcccCceEEEeecCCCCCcccccccccccCCCCCCCCC
Q 038430 444 TCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELK-----NMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDED 518 (677)
Q Consensus 444 ~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (677)
......+..+++|+.|++++.. +.......+. ..++|+.|++++|.......
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~----i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~------------------- 216 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNND----INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC------------------- 216 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSB----CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH-------------------
T ss_pred HHHHHHHhhCCCCCEEECcCCC----cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH-------------------
Confidence 0124456678899999998853 2222222221 35699999999882211000
Q ss_pred CCcccccCCccccchhhhhhcchh---hHHHHhhhc-CCCCCCcEEEEecCCCCC-----CChhHhhccCCCeEEEeCCC
Q 038430 519 GGYKEEKGGKVVDGEYEERRRKNE---KDEQLLEAL-QPPLNVEKLWILFNGGNI-----LPKWLTSLTNLSDLKLVFCE 589 (677)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l-~~~~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~c~ 589 (677)
..+... ................. ....+...+ ..+++|++|++++|.+.. +|..+..+++|++|++++|
T Consensus 217 ~~l~~~-l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n- 294 (461)
T 1z7x_W 217 RDLCGI-VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN- 294 (461)
T ss_dssp HHHHHH-HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-
T ss_pred HHHHHH-HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC-
Confidence 000000 00000000000000111 111122222 246778888888877664 5666667788888888877
Q ss_pred CCCc-----CCC--CCCcc-cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeeccccc-Cc-cc
Q 038430 590 NCEQ-----LPP--LGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE-GN-YR 659 (677)
Q Consensus 590 ~~~~-----l~~--l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~-~~ 659 (677)
.+.. +.. ....+ |+.|++++|. ++..+...+ +.....+++|++|+++++.- .. ..
T Consensus 295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l--------------~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 295 ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHF--------------SSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHH--------------HHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHH--------------HHHHhhCCCccEEEccCCccccccHH
Confidence 3321 111 11236 8888888754 332211111 01124568899999988855 21 11
Q ss_pred cccCCccc-cCCCcccccC
Q 038430 660 ITRKENIS-IIPRLSSLRI 677 (677)
Q Consensus 660 ~~~~~~~~-~~p~L~~L~i 677 (677)
... +.+. ..++|++|++
T Consensus 360 ~l~-~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 360 ELC-QGLGQPGSVLRVLWL 377 (461)
T ss_dssp HHH-HHHTSTTCCCCEEEC
T ss_pred HHH-HHHcCCCCceEEEEC
Confidence 110 1111 2568888765
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.62 E-value=4e-15 Score=149.18 Aligned_cols=123 Identities=24% Similarity=0.300 Sum_probs=76.2
Q ss_pred eEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccchh-hccCCCcCEE
Q 038430 305 VRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLPKT-LCELYNLQKL 382 (677)
Q Consensus 305 l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L 382 (677)
.+.++++++.+..+|..+. ++++.|++++ +.+..+|. .+..+++|++|++++|.++.+|.. +.++++|++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~-----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQS-----NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCS-----SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcC-----CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 4466667777766665443 5677777764 33444443 466777777777777777766654 4667777777
Q ss_pred EecCCCCccccCc-ccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeC
Q 038430 383 DIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVG 436 (677)
Q Consensus 383 ~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~ 436 (677)
++++|. +..+|. .+..+++|++|++++|. +..+| ..++.+++|++|++.++.
T Consensus 91 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 91 WVTDNK-LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp ECCSSC-CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCc-CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCc
Confidence 777776 555554 35667777777777774 33333 335566666666655443
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6.9e-17 Score=167.62 Aligned_cols=124 Identities=19% Similarity=0.119 Sum_probs=87.3
Q ss_pred eEEEEEEecCCCcccccccCC--CcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccc--cchhhccCCCcC
Q 038430 305 VRHLGLKFKGGASFPMSIHGL--NRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIER--LPKTLCELYNLQ 380 (677)
Q Consensus 305 l~~L~l~~~~~~~~p~~~~~l--~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~--lp~~i~~l~~L~ 380 (677)
++.+++.++.+. +..+..+ ++++.|++.+ +.+...+..+..+++|++|++++|.++. +|..+..+++|+
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~-----n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPR-----SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTT-----CEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCC-----ccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 456666665543 3445555 7888888885 3344444456678899999999988773 777788889999
Q ss_pred EEEecCCCCccccCcccccccccceeecCccCCCc--ccCCcCCCCCCCCccCceee
Q 038430 381 KLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLK--YMPIGISKLTSLRTLDKFAV 435 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~--~~p~~i~~l~~L~~L~l~~~ 435 (677)
+|++++|......|..++.+++|++|++++|..+. .+|..+..+++|++|++.++
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 99999887444677778888899999998884444 24544566666777666655
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=153.92 Aligned_cols=213 Identities=19% Similarity=0.165 Sum_probs=158.5
Q ss_pred CCCCccCCcccCCCCCcCEEEecCccccccch-hhccCCCcCEEEecCCCCccccCc-ccccccccceeecCccCCCccc
Q 038430 340 NSSLDKIPENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYM 417 (677)
Q Consensus 340 ~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~ 417 (677)
+..+..+|..+. ++|++|++++|.++.+++ .+.++++|++|++++|. +..++. .+..+++|++|++++|......
T Consensus 16 ~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 16 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp TSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccC
Confidence 344566777654 589999999999998776 79999999999999998 666654 7899999999999999644444
Q ss_pred CCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCC
Q 038430 418 PIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDRE 497 (677)
Q Consensus 418 p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 497 (677)
|..+..+++|++|++.++.... .....+..+++|+.|.+++..-.. . ..+..+..+++|+.|++++|.....
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~-~--~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLAS-----LENFPIGHLKTLKELNVAHNLIQS-F--KLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCC-----STTCCCTTCTTCCEEECCSSCCCC-C--CCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred hhhhcCCccccEEECCCCCccc-----cCchhcccCCCCCEEECcCCccce-e--cCchhhccCCCCCEEECCCCCCCcC
Confidence 5679999999999998877653 223347888999999998743211 0 0134577889999999998822110
Q ss_pred CcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCc-EEEEecCCCCCCChhHhh
Q 038430 498 DEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVE-KLWILFNGGNILPKWLTS 576 (677)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~lp~~~~~ 576 (677)
. ......+..++.|. .|++++|.+..+|.....
T Consensus 165 ~----------------------------------------------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~ 198 (276)
T 2z62_A 165 Y----------------------------------------------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198 (276)
T ss_dssp C----------------------------------------------GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC
T ss_pred C----------------------------------------------HHHhhhhhhccccceeeecCCCcccccCccccC
Confidence 0 01112222334444 899999999888877666
Q ss_pred ccCCCeEEEeCCCCCCcCCC--CCCcc-cceeecccc
Q 038430 577 LTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHL 610 (677)
Q Consensus 577 l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~ 610 (677)
..+|+.|++++| .+..+|. ++.++ |+.|++++.
T Consensus 199 ~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 199 EIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp SCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred CCcccEEECCCC-ceeecCHhHhcccccccEEEccCC
Confidence 679999999999 5767775 68899 999999973
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-17 Score=177.54 Aligned_cols=187 Identities=19% Similarity=0.110 Sum_probs=80.6
Q ss_pred ceEEEEEEecCCCc-----ccccccCCCcccEEEeCCCCCCCCCCccCCccc-------CCCCCcCEEEecCccccc---
Q 038430 304 KVRHLGLKFKGGAS-----FPMSIHGLNRLRTLLIDDESPPNSSLDKIPENV-------GKLMHLKYLNLSELHIER--- 368 (677)
Q Consensus 304 ~l~~L~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~-------~~l~~L~~L~Ls~~~i~~--- 368 (677)
.++.|++++|.+.. ++..+..+++|++|+++++.+ +.....+|..+ ..+++|++|+|++|.++.
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~-~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCT-TSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccccc-CccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 45555555554432 223344555566666554211 01111223222 455566666666665553
Q ss_pred --cchhhccCCCcCEEEecCCCCcc----ccCcccccc---------cccceeecCccCCC-cccC---CcCCCCCCCCc
Q 038430 369 --LPKTLCELYNLQKLDIRGCRNLR----ELPTGIGKL---------KNMRSLLNGLTCSL-KYMP---IGISKLTSLRT 429 (677)
Q Consensus 369 --lp~~i~~l~~L~~L~L~~~~~l~----~lp~~i~~l---------~~L~~L~l~~~~~~-~~~p---~~i~~l~~L~~ 429 (677)
+|..+..+++|++|+|++|.... .++..+..+ ++|++|++++|... ..+| ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 45555555666666666555211 122222233 55666666555322 1222 23444555555
Q ss_pred cCceeeCCCcCCCCccccc-ccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 430 LDKFAVGGGVDGGSTCRLE-CLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 430 L~l~~~~~~~~~~~~~~~~-~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
|++.++...... ...... .+..+++|+.|.++++.-........+..+..+++|+.|+|++|
T Consensus 192 L~L~~n~l~~~g-~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 192 VKMVQNGIRPEG-IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp EECCSSCCCHHH-HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred EECcCCCCCHhH-HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 555544432100 000111 44455555555555421000000222333445555555555544
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-15 Score=150.55 Aligned_cols=202 Identities=17% Similarity=0.162 Sum_probs=127.4
Q ss_pred CCCcccccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCcc-ccccch-hhccCCCcCEEEecC-CCC
Q 038430 314 GGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELH-IERLPK-TLCELYNLQKLDIRG-CRN 389 (677)
Q Consensus 314 ~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~-i~~lp~-~i~~l~~L~~L~L~~-~~~ 389 (677)
.+..+|. + .++|++|++++ +.+..+|. .++.+++|++|++++|. ++.+|+ .+.++++|++|++++ |.
T Consensus 22 ~l~~ip~-~--~~~l~~L~l~~-----n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~- 92 (239)
T 2xwt_C 22 DIQRIPS-L--PPSTQTLKLIE-----THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN- 92 (239)
T ss_dssp SCSSCCC-C--CTTCCEEEEES-----CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-
T ss_pred CccccCC-C--CCcccEEEEeC-----CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-
Confidence 3566665 3 23677777774 34455554 46777777777777776 776655 567777777777777 44
Q ss_pred ccccCc-ccccccccceeecCccCCCcccCCcCCCCCCCC---ccCceee-CCCcCCCCcccccccccCCcCCcccccCc
Q 038430 390 LRELPT-GIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLR---TLDKFAV-GGGVDGGSTCRLECLKNFQLIRKCGIEGL 464 (677)
Q Consensus 390 l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~L~~l~~L~~L~i~~~ 464 (677)
+..+|. .+..+++|++|++++|. +..+|. ++.+.+|+ +|++.++ ....
T Consensus 93 l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~------------------------- 145 (239)
T 2xwt_C 93 LTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTS------------------------- 145 (239)
T ss_dssp CCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCE-------------------------
T ss_pred eeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhh-------------------------
Confidence 666653 56777777777777773 445665 66666665 5555444 2211
Q ss_pred cCCCChhHHHHhhccCCcccC-ceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhh
Q 038430 465 SNVSHLDEAERLELKNMENLL-HLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEK 543 (677)
Q Consensus 465 ~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (677)
.....+.++++|+ .|++++|....
T Consensus 146 --------i~~~~~~~l~~L~~~L~l~~n~l~~----------------------------------------------- 170 (239)
T 2xwt_C 146 --------IPVNAFQGLCNETLTLKLYNNGFTS----------------------------------------------- 170 (239)
T ss_dssp --------ECTTTTTTTBSSEEEEECCSCCCCE-----------------------------------------------
T ss_pred --------cCcccccchhcceeEEEcCCCCCcc-----------------------------------------------
Confidence 1112244566677 77776551110
Q ss_pred HHHHh-hhcCCCCCCcEEEEecCC-CCCCCh-hHhhc-cCCCeEEEeCCCCCCcCCCCCCcc-cceeecccccc
Q 038430 544 DEQLL-EALQPPLNVEKLWILFNG-GNILPK-WLTSL-TNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKS 612 (677)
Q Consensus 544 ~~~~~-~~l~~~~~L~~L~l~~~~-~~~lp~-~~~~l-~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~ 612 (677)
+. ..+.. ++|++|++++|. +..+|. .+..+ ++|+.|++++| .+..+|.. .++ |+.|++.++..
T Consensus 171 ---i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 171 ---VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIARNTWT 238 (239)
T ss_dssp ---ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC--
T ss_pred ---cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-HhccCceeeccCccC
Confidence 11 11222 688999999984 777754 46678 89999999987 66677754 677 99999887543
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.7e-15 Score=147.07 Aligned_cols=192 Identities=22% Similarity=0.274 Sum_probs=130.9
Q ss_pred cccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccch-hhccCCCcCEEEecCCCCccccCcc-cccccccc
Q 038430 327 RLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELPTG-IGKLKNMR 404 (677)
Q Consensus 327 ~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~ 404 (677)
..++++++ +..+..+|..+. .+|+.|++++|.++.+|+ .+.++++|++|++++|. +..+|.. +..+++|+
T Consensus 17 ~~~~l~~~-----~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~ 88 (270)
T 2o6q_A 17 NKNSVDCS-----SKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLE 88 (270)
T ss_dssp TTTEEECT-----TSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCC
T ss_pred CCCEEEcc-----CCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCC
Confidence 57888888 455667887654 689999999999998876 68999999999999998 7778765 57899999
Q ss_pred eeecCccCCCcccCC-cCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcc
Q 038430 405 SLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMEN 483 (677)
Q Consensus 405 ~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~ 483 (677)
+|++++|. +..+|. .+..+++|++|++.++.... .....+ ..+++
T Consensus 89 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~----------------------------~~l~~ 134 (270)
T 2o6q_A 89 TLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKS-----LPPRVF----------------------------DSLTK 134 (270)
T ss_dssp EEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCC-----CCTTTT----------------------------TTCTT
T ss_pred EEECCCCc-CCcCCHhHcccccCCCEEECCCCccCe-----eCHHHh----------------------------CcCcC
Confidence 99999994 555554 46788888888887665442 112223 33455
Q ss_pred cCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEe
Q 038430 484 LLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWIL 563 (677)
Q Consensus 484 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 563 (677)
|+.|++++|..... ....+..+++|+.|+++
T Consensus 135 L~~L~Ls~n~l~~~-------------------------------------------------~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 135 LTYLSLGYNELQSL-------------------------------------------------PKGVFDKLTSLKELRLY 165 (270)
T ss_dssp CCEEECCSSCCCCC-------------------------------------------------CTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCcc-------------------------------------------------CHhHccCCcccceeEec
Confidence 55555554411110 00123445677777777
Q ss_pred cCCCCCCChh-HhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeecccc
Q 038430 564 FNGGNILPKW-LTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHL 610 (677)
Q Consensus 564 ~~~~~~lp~~-~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~ 610 (677)
+|.+..+|.. +..+++|++|++++| .+..+|. +..++ |+.|+++++
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCC
Confidence 7776666543 556777777777776 4555554 56677 777777663
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.3e-15 Score=150.90 Aligned_cols=223 Identities=16% Similarity=0.095 Sum_probs=138.4
Q ss_pred ceEEEEEEecCCCc--cc--ccccCCCcccEEEeCCCCCCCCCCccCCccc--CCCCCcCEEEecCccccc-cc----hh
Q 038430 304 KVRHLGLKFKGGAS--FP--MSIHGLNRLRTLLIDDESPPNSSLDKIPENV--GKLMHLKYLNLSELHIER-LP----KT 372 (677)
Q Consensus 304 ~l~~L~l~~~~~~~--~p--~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~--~~l~~L~~L~Ls~~~i~~-lp----~~ 372 (677)
.++.+.+....+.. +. ..+..+++|++|++++ +......|..+ +.+++|++|++++|.++. .| ..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~----n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLED----LKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEES----CCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeC----CEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 45566666554421 11 0122345578888875 33334455555 677788888888887763 22 23
Q ss_pred hccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcc--cC--CcCCCCCCCCccCceeeCCCcCCCCccccc
Q 038430 373 LCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKY--MP--IGISKLTSLRTLDKFAVGGGVDGGSTCRLE 448 (677)
Q Consensus 373 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~--~p--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 448 (677)
+..+++|++|++++|......|..++.+++|++|++++|...+. ++ ..++.+++|++|++.++...
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---------- 210 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME---------- 210 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC----------
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC----------
Confidence 45677888888887773333345677778888888887753321 22 22345666666665544321
Q ss_pred ccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCc
Q 038430 449 CLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGK 528 (677)
Q Consensus 449 ~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (677)
..+......+..+++|+.|++++|......|
T Consensus 211 --------------------~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p----------------------------- 241 (310)
T 4glp_A 211 --------------------TPTGVCAALAAAGVQPHSLDLSHNSLRATVN----------------------------- 241 (310)
T ss_dssp --------------------CHHHHHHHHHHHTCCCSSEECTTSCCCCCCC-----------------------------
T ss_pred --------------------chHHHHHHHHhcCCCCCEEECCCCCCCccch-----------------------------
Confidence 2222222224567888888888772221100
Q ss_pred cccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeec
Q 038430 529 VVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLEL 607 (677)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l 607 (677)
.....+..+++|++|+|++|.+..+|..+. ++|++|+|++| .+..+|.+..++ |+.|++
T Consensus 242 -----------------~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L 301 (310)
T 4glp_A 242 -----------------PSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTL 301 (310)
T ss_dssp -----------------SCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEEC
T ss_pred -----------------hhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEEC
Confidence 001122334799999999999999998764 89999999999 777778888899 999999
Q ss_pred cc
Q 038430 608 CH 609 (677)
Q Consensus 608 ~~ 609 (677)
++
T Consensus 302 ~~ 303 (310)
T 4glp_A 302 DG 303 (310)
T ss_dssp SS
T ss_pred cC
Confidence 87
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-15 Score=146.27 Aligned_cols=198 Identities=16% Similarity=0.114 Sum_probs=150.7
Q ss_pred CCCceEEEEEEecCCCcccc-cccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecC-ccccccch-hhccC
Q 038430 301 FGGKVRHLGLKFKGGASFPM-SIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSE-LHIERLPK-TLCEL 376 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~-~~i~~lp~-~i~~l 376 (677)
++..++.|+++++.+..+|. .+..+++|++|++++ +..+..+|. .+..+++|++|++++ |.++.+|+ .+.++
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~----n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l 104 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSI----DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL 104 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEEC----CSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCC----CCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC
Confidence 57799999999999998875 788999999999996 333666765 688999999999999 88998875 58899
Q ss_pred CCcCEEEecCCCCccccCcccccccccc---eeecCccCCCcccCC-cCCCCCCCC-ccCceeeCCCcCCCCcccccccc
Q 038430 377 YNLQKLDIRGCRNLRELPTGIGKLKNMR---SLLNGLTCSLKYMPI-GISKLTSLR-TLDKFAVGGGVDGGSTCRLECLK 451 (677)
Q Consensus 377 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~---~L~l~~~~~~~~~p~-~i~~l~~L~-~L~l~~~~~~~~~~~~~~~~~L~ 451 (677)
++|++|++++|. +..+|. ++.+++|+ +|++++|..+..+|. .+..+++|+ +|++.++.....+ ...
T Consensus 105 ~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~-----~~~-- 175 (239)
T 2xwt_C 105 PLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ-----GYA-- 175 (239)
T ss_dssp TTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC-----TTT--
T ss_pred CCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC-----Hhh--
Confidence 999999999998 778998 88888888 999999955666665 488899999 8888766543210 000
Q ss_pred cCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeec-CCCCCcccccccccccCCCCCCCCCCCcccccCCccc
Q 038430 452 NFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEV-VDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVV 530 (677)
Q Consensus 452 ~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (677)
+.. ++|+.|+++.|. ...
T Consensus 176 --------------------------~~~-~~L~~L~L~~n~~l~~---------------------------------- 194 (239)
T 2xwt_C 176 --------------------------FNG-TKLDAVYLNKNKYLTV---------------------------------- 194 (239)
T ss_dssp --------------------------TTT-CEEEEEECTTCTTCCE----------------------------------
T ss_pred --------------------------cCC-CCCCEEEcCCCCCccc----------------------------------
Confidence 111 355566665441 100
Q ss_pred cchhhhhhcchhhHHHHhhhcCCC-CCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCC
Q 038430 531 DGEYEERRRKNEKDEQLLEALQPP-LNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCE 589 (677)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~ 589 (677)
.....+..+ ++|+.|++++|.+..+|.. .+++|+.|++.++.
T Consensus 195 ---------------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 195 ---------------IDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp ---------------ECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred ---------------CCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 001234556 8899999999999989875 78999999998874
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-15 Score=152.26 Aligned_cols=131 Identities=25% Similarity=0.257 Sum_probs=110.6
Q ss_pred cCCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCC
Q 038430 300 AFGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYN 378 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~ 378 (677)
.++..++.|++++|.+..++ ..+..+++|++|++++ +.+..++.. +.+++|++|++++|.++.+|..+..+++
T Consensus 28 ~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-----n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 101 (290)
T 1p9a_G 28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-----AELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPA 101 (290)
T ss_dssp CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-----SCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTT
T ss_pred CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-----CccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCC
Confidence 44678999999999998775 6799999999999995 445556543 7899999999999999999999999999
Q ss_pred cCEEEecCCCCccccC-cccccccccceeecCccCCCcccCCc-CCCCCCCCccCceeeCCC
Q 038430 379 LQKLDIRGCRNLRELP-TGIGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~ 438 (677)
|++|++++|. +..+| ..+..+++|++|++++|. +..+|.. +..+++|+.|++.++...
T Consensus 102 L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 102 LTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp CCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCC
Confidence 9999999998 77776 568999999999999994 5566654 678899999988766544
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-16 Score=162.03 Aligned_cols=225 Identities=14% Similarity=0.094 Sum_probs=168.7
Q ss_pred cccEEEeCCCCCCCCCCccCCcccCCC--CCcCEEEecCccccccchhhccCCCcCEEEecCCCCccc-cCccccccccc
Q 038430 327 RLRTLLIDDESPPNSSLDKIPENVGKL--MHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRE-LPTGIGKLKNM 403 (677)
Q Consensus 327 ~L~~L~l~~~~l~~~~~~~lp~~~~~l--~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~i~~l~~L 403 (677)
.++.++++++. +. |..+..+ .+++.|+++++.+...++.+..+++|++|++++|..... +|..+..+++|
T Consensus 48 ~~~~l~l~~~~-----~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTGKN-----LH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TSSEEECTTCB-----CC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hheeecccccc-----CC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 47889998632 22 4455666 899999999999987777788899999999999983333 78889999999
Q ss_pred ceeecCccCCCcccCCcCCCCCCCCccCceeeC-CCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCc
Q 038430 404 RSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVG-GGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNME 482 (677)
Q Consensus 404 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 482 (677)
++|++++|......|..++.+++|++|++.++. ... ......+..+++|+.|.++++..+.. ......+..++
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~----~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~l~ 194 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE----FALQTLLSSCSRLDELNLSWCFDFTE--KHVQVAVAHVS 194 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH----HHHHHHHHHCTTCCEEECCCCTTCCH--HHHHHHHHHSC
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH----HHHHHHHhcCCCCCEEcCCCCCCcCh--HHHHHHHHhcc
Confidence 999999996555677788899999999998873 331 12344477899999999998644432 12344567788
Q ss_pred -ccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEE
Q 038430 483 -NLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLW 561 (677)
Q Consensus 483 -~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 561 (677)
+|+.|++++|.. ......+...+..+++|+.|+
T Consensus 195 ~~L~~L~l~~~~~----------------------------------------------~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 195 ETITQLNLSGYRK----------------------------------------------NLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp TTCCEEECCSCGG----------------------------------------------GSCHHHHHHHHHHCTTCSEEE
T ss_pred cCCCEEEeCCCcc----------------------------------------------cCCHHHHHHHHhhCCCCCEEe
Confidence 999999998710 112234444555678999999
Q ss_pred EecCC-CC-CCChhHhhccCCCeEEEeCCCCCC--cCCCCCCcc-cceeecccc
Q 038430 562 ILFNG-GN-ILPKWLTSLTNLSDLKLVFCENCE--QLPPLGKLP-LEKLELCHL 610 (677)
Q Consensus 562 l~~~~-~~-~lp~~~~~l~~L~~L~l~~c~~~~--~l~~l~~l~-L~~L~l~~~ 610 (677)
+++|. +. ..+..+..+++|++|++++|..+. .+..++.+| |+.|++++|
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 99998 43 456678899999999999996432 233477899 999999987
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-16 Score=177.69 Aligned_cols=133 Identities=14% Similarity=0.011 Sum_probs=60.6
Q ss_pred CceEEEEEEecCCCc-----ccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCC
Q 038430 303 GKVRHLGLKFKGGAS-----FPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELY 377 (677)
Q Consensus 303 ~~l~~L~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~ 377 (677)
.+++.|++.+|.+.. ++.....+++|++|+++++.+.......++..+.++++|++|++++|.+..+|..+.+++
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~ 243 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCT
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhh
Confidence 445555555553311 222233455555555554322111112233334455566666666655555555555556
Q ss_pred CcCEEEecCCCCc---cccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeC
Q 038430 378 NLQKLDIRGCRNL---RELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVG 436 (677)
Q Consensus 378 ~L~~L~L~~~~~l---~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 436 (677)
+|+.|+++.+... ...+..+..+++|+.|+++++ ....+|..+..+++|++|++.++.
T Consensus 244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC
T ss_pred HHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCc
Confidence 6666655532211 122223444444555544443 233344444455555555555444
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-16 Score=164.52 Aligned_cols=248 Identities=14% Similarity=0.075 Sum_probs=175.4
Q ss_pred CCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccc----ccchhh-------ccCCCcCEE
Q 038430 314 GGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE----RLPKTL-------CELYNLQKL 382 (677)
Q Consensus 314 ~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~----~lp~~i-------~~l~~L~~L 382 (677)
++..++..+..+++|++|++++|.+.......++..+..+++|++|+|++|.+. .+|..+ ..+++|++|
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 345567778889999999999743322222234455778999999999998654 345554 789999999
Q ss_pred EecCCCCcc----ccCcccccccccceeecCccCCCcc----cCCcCCCC---------CCCCccCceeeCCCcCCCCcc
Q 038430 383 DIRGCRNLR----ELPTGIGKLKNMRSLLNGLTCSLKY----MPIGISKL---------TSLRTLDKFAVGGGVDGGSTC 445 (677)
Q Consensus 383 ~L~~~~~l~----~lp~~i~~l~~L~~L~l~~~~~~~~----~p~~i~~l---------~~L~~L~l~~~~~~~~~~~~~ 445 (677)
+|++|.... .+|..+..+++|++|++++|..... ++..+..+ ++|++|++.++.... ..
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~----~~ 175 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN----GS 175 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG----GG
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc----HH
Confidence 999998333 3788899999999999999964222 23334444 899999998887652 11
Q ss_pred cc---cccccCCcCCcccccCccCCC-ChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCc
Q 038430 446 RL---ECLKNFQLIRKCGIEGLSNVS-HLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGY 521 (677)
Q Consensus 446 ~~---~~L~~l~~L~~L~i~~~~~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (677)
.. ..+..+++|+.|.++++.-.. .........+..+++|+.|+|++|..
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l--------------------------- 228 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF--------------------------- 228 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC---------------------------
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC---------------------------
Confidence 12 467788899999998853211 01112233788899999999998811
Q ss_pred ccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCC-----CChhHhh--ccCCCeEEEeCCCCCCc-
Q 038430 522 KEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNI-----LPKWLTS--LTNLSDLKLVFCENCEQ- 593 (677)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----lp~~~~~--l~~L~~L~l~~c~~~~~- 593 (677)
.......++..+..+++|+.|+|++|.+.. +|.++.. +++|++|+|++| .+..
T Consensus 229 ------------------~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~ 289 (386)
T 2ca6_A 229 ------------------THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELD 289 (386)
T ss_dssp ------------------HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHH
T ss_pred ------------------CcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHH
Confidence 011124456677788999999999998764 3566643 899999999999 4544
Q ss_pred ----CCC-C-CCcc-cceeeccccc
Q 038430 594 ----LPP-L-GKLP-LEKLELCHLK 611 (677)
Q Consensus 594 ----l~~-l-~~l~-L~~L~l~~~~ 611 (677)
+|. + .++| |+.|++++|+
T Consensus 290 g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 290 AVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHHHhcCCCceEEEccCCc
Confidence 664 3 5689 9999999853
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-15 Score=152.33 Aligned_cols=128 Identities=27% Similarity=0.308 Sum_probs=95.3
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchh-hccCCCcC
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKT-LCELYNLQ 380 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~L~ 380 (677)
..+++.|.+.++.+..++ .+..+++|++|++++| .+..+ ..++.+++|++|++++|.++.+|+. ++++++|+
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n-----~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGN-----KLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTS-----CCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCC-----CCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 457788888888887766 5777888888888863 33344 3678888889999988888877654 68888899
Q ss_pred EEEecCCCCccccCc-ccccccccceeecCccCCCcccCCc-CCCCCCCCccCceeeCCC
Q 038430 381 KLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~ 438 (677)
+|++++|. +..+|. .++.+++|++|++++|. +..+|.. ++.+++|++|++.++...
T Consensus 113 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 113 ELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp EEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEECCCCc-CCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcC
Confidence 99998888 555554 46888888888888884 4455543 577888888877766543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.6e-16 Score=173.94 Aligned_cols=110 Identities=18% Similarity=0.140 Sum_probs=71.0
Q ss_pred CCceEEEEEEec-CCCc--ccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcc--cc--ccchhhc
Q 038430 302 GGKVRHLGLKFK-GGAS--FPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELH--IE--RLPKTLC 374 (677)
Q Consensus 302 ~~~l~~L~l~~~-~~~~--~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~--i~--~lp~~i~ 374 (677)
..+++.|++.+| .+.. ++.....+++|++|++++|.+.......++.....+++|++|++++|. +. .++..+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 357788888776 3332 444445678888888886443222323343334567788888888876 32 2333345
Q ss_pred cCCCcCEEEecCCCCccccCcccccccccceeecCcc
Q 038430 375 ELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLT 411 (677)
Q Consensus 375 ~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 411 (677)
++++|++|++++|..+..+|..+..+++|++|+++.+
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 6788888888888656667777777788888876554
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=146.06 Aligned_cols=193 Identities=21% Similarity=0.232 Sum_probs=136.2
Q ss_pred cccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCc-cccc
Q 038430 321 SIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPT-GIGK 399 (677)
Q Consensus 321 ~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~ 399 (677)
....+++|+.|.+.+ +.+..++ .++.+++|++|++++|.++.++ .++++++|++|++++|. +..+|. .++.
T Consensus 36 ~~~~l~~L~~L~l~~-----~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~ 107 (272)
T 3rfs_A 36 TQNELNSIDQIIANN-----SDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDK 107 (272)
T ss_dssp CHHHHTTCCEEECTT-----SCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred ccccccceeeeeeCC-----CCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcC
Confidence 455678899999985 3445554 4788999999999999988864 78899999999999998 666665 4688
Q ss_pred ccccceeecCccCCCcccCC-cCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhc
Q 038430 400 LKNMRSLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLEL 478 (677)
Q Consensus 400 l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l 478 (677)
+++|++|++++|. +..+|. .++.+++|++|++.++.... ..... +
T Consensus 108 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~----------------------------~ 153 (272)
T 3rfs_A 108 LTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQS-----LPKGV----------------------------F 153 (272)
T ss_dssp CTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-----CCTTT----------------------------T
T ss_pred CcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCc-----cCHHH----------------------------h
Confidence 9999999999995 445554 47888888888887665432 11111 3
Q ss_pred cCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCc
Q 038430 479 KNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVE 558 (677)
Q Consensus 479 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 558 (677)
..+++|+.|++++|.... .....+..+++|+
T Consensus 154 ~~l~~L~~L~l~~n~l~~-------------------------------------------------~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 154 DKLTNLTELDLSYNQLQS-------------------------------------------------LPEGVFDKLTQLK 184 (272)
T ss_dssp TTCTTCCEEECCSSCCCC-------------------------------------------------CCTTTTTTCTTCC
T ss_pred ccCccCCEEECCCCCcCc-------------------------------------------------cCHHHhcCCccCC
Confidence 345566666666551111 0012245668889
Q ss_pred EEEEecCCCCCCChh-HhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeecccc
Q 038430 559 KLWILFNGGNILPKW-LTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHL 610 (677)
Q Consensus 559 ~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~ 610 (677)
.|++++|.+..+|.. +..+++|++|++++|+.. +.+| |+.|++..+
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWIN 232 (272)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHH
T ss_pred EEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHH
Confidence 999999888877654 578899999999988432 3456 777777653
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-15 Score=169.61 Aligned_cols=180 Identities=15% Similarity=0.051 Sum_probs=123.7
Q ss_pred CceEEEEEEecCC---CcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccc-----ccchhhc
Q 038430 303 GKVRHLGLKFKGG---ASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE-----RLPKTLC 374 (677)
Q Consensus 303 ~~l~~L~l~~~~~---~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~-----~lp~~i~ 374 (677)
.+++.|++.++.. ..++.....+++|++|++++|.+.......++..+..+++|++|++++|.++ .++..+.
T Consensus 138 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp GGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred ccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 4588888887652 1233344578999999999743322222223334467889999999999875 4566677
Q ss_pred cCCCcCEEEecCCCCccccCcccccccccceeecCccCCC---cccCCcCCCCCCCCccCceeeCCCcCCCCcccccccc
Q 038430 375 ELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSL---KYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLK 451 (677)
Q Consensus 375 ~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~---~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~ 451 (677)
++++|++|++++|. +..+|..+..+++|++|+++.+... ...+..+..+++|+.|++..+.. ......+.
T Consensus 218 ~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~------~~l~~~~~ 290 (592)
T 3ogk_B 218 NCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP------NEMPILFP 290 (592)
T ss_dssp HCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT------TTGGGGGG
T ss_pred hCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch------hHHHHHHh
Confidence 89999999999988 7778888999999999999864332 23345577788888887765432 22445566
Q ss_pred cCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 452 NFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 452 ~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
.+++|+.|.++++. +.. ......+..+++|+.|+++.+
T Consensus 291 ~~~~L~~L~Ls~~~-l~~--~~~~~~~~~~~~L~~L~L~~~ 328 (592)
T 3ogk_B 291 FAAQIRKLDLLYAL-LET--EDHCTLIQKCPNLEVLETRNV 328 (592)
T ss_dssp GGGGCCEEEETTCC-CCH--HHHHHHHTTCTTCCEEEEEGG
T ss_pred hcCCCcEEecCCCc-CCH--HHHHHHHHhCcCCCEEeccCc
Confidence 78889999988754 221 222233577888888888733
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-14 Score=150.03 Aligned_cols=234 Identities=18% Similarity=0.086 Sum_probs=135.8
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCcccc-ccch-hhccCCCcCEEE
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIE-RLPK-TLCELYNLQKLD 383 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~-~lp~-~i~~l~~L~~L~ 383 (677)
.++.+++++.++|..+ .++++.|++++ +.+..+|. .|.++++|++|+|++|.+. .+|. .|.++++|+.+.
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~-----N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVL-----TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEES-----CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccC-----CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 3455566666666544 24677777763 44556664 3567777777777777754 3443 356666666543
Q ss_pred e-cCCCCccccC-cccccccccceeecCccCCCcccCC-cCCCCCCCCccCceeeCCCcCCCCcccccccccCC-cCCcc
Q 038430 384 I-RGCRNLRELP-TGIGKLKNMRSLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQ-LIRKC 459 (677)
Q Consensus 384 L-~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~-~L~~L 459 (677)
. .+|. +..+| ..+..+++|++|++++|. +..+|. .+....++..|++..+.... ......+..+. .++.|
T Consensus 86 ~~~~N~-l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~----~l~~~~f~~~~~~l~~L 159 (350)
T 4ay9_X 86 IEKANN-LLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIH----TIERNSFVGLSFESVIL 159 (350)
T ss_dssp EEEETT-CCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCC----EECTTSSTTSBSSCEEE
T ss_pred cccCCc-ccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccc----cccccchhhcchhhhhh
Confidence 3 3344 55553 446667777777777763 344442 23344444455443322111 11111222222 24445
Q ss_pred cccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhc
Q 038430 460 GIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRR 539 (677)
Q Consensus 460 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (677)
.+++.. +... ........+|+.|.+..+....
T Consensus 160 ~L~~N~----i~~i-~~~~f~~~~L~~l~l~~~n~l~------------------------------------------- 191 (350)
T 4ay9_X 160 WLNKNG----IQEI-HNSAFNGTQLDELNLSDNNNLE------------------------------------------- 191 (350)
T ss_dssp ECCSSC----CCEE-CTTSSTTEEEEEEECTTCTTCC-------------------------------------------
T ss_pred cccccc----ccCC-ChhhccccchhHHhhccCCccc-------------------------------------------
Confidence 554421 1111 1112233566777665431111
Q ss_pred chhhHHHHh-hhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccc
Q 038430 540 KNEKDEQLL-EALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCH 609 (677)
Q Consensus 540 ~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~ 609 (677)
.+. ..+..+++|+.|+|++|.+..+|.+ .+.+|+.|.+.+|..++.+|.+..++ |+.+++.+
T Consensus 192 ------~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 192 ------ELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp ------CCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred ------CCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 111 2356678999999999999999964 58899999999998999999999999 99999864
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-14 Score=145.94 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=62.8
Q ss_pred CCCCCCcEEEEecCCCCCC-ChhHhhc---cCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCccccCCCC
Q 038430 552 QPPLNVEKLWILFNGGNIL-PKWLTSL---TNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFLEIEES 626 (677)
Q Consensus 552 ~~~~~L~~L~l~~~~~~~l-p~~~~~l---~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~ 626 (677)
..+++|++|+|++|.+... |..+..+ ++|++|++++| .++.+|.-- .+ |+.|++++ +.++.++.
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls~-N~l~~~~~-------- 289 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLSS-NRLNRAPQ-------- 289 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECCS-CCCCSCCC--------
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECCC-CcCCCCch--------
Confidence 4568999999999999876 7777755 79999999999 666777521 27 99999997 45655422
Q ss_pred CCCCCCCCCCCcccCCCccceeeeccccc
Q 038430 627 EDDPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
...+++|+.|++++++-
T Consensus 290 ------------~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 290 ------------PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp ------------TTSCCCCSCEECSSTTT
T ss_pred ------------hhhCCCccEEECcCCCC
Confidence 25789999999998763
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.4e-14 Score=142.38 Aligned_cols=169 Identities=20% Similarity=0.220 Sum_probs=106.9
Q ss_pred ccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCccccccc
Q 038430 322 IHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLK 401 (677)
Q Consensus 322 ~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~ 401 (677)
+..+++|+.|++++ +.+..++ .+..+++|++|++++|.++.+++ +.++++|++|++++|. +..+|. ++.++
T Consensus 42 ~~~l~~L~~L~l~~-----~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~ 112 (291)
T 1h6t_A 42 QNELNSIDQIIANN-----SDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLK 112 (291)
T ss_dssp HHHHHTCCEEECTT-----SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCT
T ss_pred hhhcCcccEEEccC-----CCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCC
Confidence 34466677777764 3344443 36667777777777777776665 7777777777777776 666554 77777
Q ss_pred ccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCC
Q 038430 402 NMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNM 481 (677)
Q Consensus 402 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~ 481 (677)
+|++|++++|. +..+ ..++.+++|+.|++.++.... +. .+..+
T Consensus 113 ~L~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n~l~~-------~~----------------------------~l~~l 155 (291)
T 1h6t_A 113 KLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKITD-------IT----------------------------VLSRL 155 (291)
T ss_dssp TCCEEECTTSC-CCCC-GGGGGCTTCCEEECCSSCCCC-------CG----------------------------GGGGC
T ss_pred CCCEEECCCCc-CCCC-hhhcCCCCCCEEEccCCcCCc-------ch----------------------------hhccC
Confidence 77777777773 4333 245556666666555443321 01 13345
Q ss_pred cccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEE
Q 038430 482 ENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLW 561 (677)
Q Consensus 482 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 561 (677)
++|+.|++++|.... + ..+..+++|+.|+
T Consensus 156 ~~L~~L~L~~N~l~~--------------------------------------------------~-~~l~~l~~L~~L~ 184 (291)
T 1h6t_A 156 TKLDTLSLEDNQISD--------------------------------------------------I-VPLAGLTKLQNLY 184 (291)
T ss_dssp TTCSEEECCSSCCCC--------------------------------------------------C-GGGTTCTTCCEEE
T ss_pred CCCCEEEccCCcccc--------------------------------------------------c-hhhcCCCccCEEE
Confidence 556666666551111 0 0145567888888
Q ss_pred EecCCCCCCChhHhhccCCCeEEEeCC
Q 038430 562 ILFNGGNILPKWLTSLTNLSDLKLVFC 588 (677)
Q Consensus 562 l~~~~~~~lp~~~~~l~~L~~L~l~~c 588 (677)
+++|.+..+|. +..+++|+.|++++|
T Consensus 185 L~~N~i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 185 LSKNHISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp CCSSCCCBCGG-GTTCTTCSEEEEEEE
T ss_pred CCCCcCCCChh-hccCCCCCEEECcCC
Confidence 88888877764 778888888888887
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-15 Score=155.73 Aligned_cols=249 Identities=15% Similarity=0.107 Sum_probs=146.9
Q ss_pred EEEEecCCCc-ccccccCCCcccEEEeCCCCCCCCCCccCC-----cccCCCC-CcCEEEecCcccccc-chhhccC---
Q 038430 308 LGLKFKGGAS-FPMSIHGLNRLRTLLIDDESPPNSSLDKIP-----ENVGKLM-HLKYLNLSELHIERL-PKTLCEL--- 376 (677)
Q Consensus 308 L~l~~~~~~~-~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp-----~~~~~l~-~L~~L~Ls~~~i~~l-p~~i~~l--- 376 (677)
..++.+.+.. +|..+...++|++|++++| .+...+ ..+..++ +|++|+|++|.++.. +..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-----~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-----NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTS-----CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCC-----CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 3455666654 3444444556999999863 344443 5567777 899999999998854 5556654
Q ss_pred --CCcCEEEecCCCCccccC-cc----cccc-cccceeecCccCCCcccCC-c----CCC-CCCCCccCceeeCCCcCCC
Q 038430 377 --YNLQKLDIRGCRNLRELP-TG----IGKL-KNMRSLLNGLTCSLKYMPI-G----ISK-LTSLRTLDKFAVGGGVDGG 442 (677)
Q Consensus 377 --~~L~~L~L~~~~~l~~lp-~~----i~~l-~~L~~L~l~~~~~~~~~p~-~----i~~-l~~L~~L~l~~~~~~~~~~ 442 (677)
++|++|++++|. +...+ .. +..+ ++|++|++++|. +...+. . +.. .++|++|++.++......
T Consensus 78 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~- 154 (362)
T 3goz_A 78 IPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS- 154 (362)
T ss_dssp SCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC-
T ss_pred cCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH-
Confidence 899999999998 55443 33 3444 789999999985 444332 2 333 358888888776654210
Q ss_pred CcccccccccCC-cCCcccccCccCCCChhHHHHhhccCC-cccCceEEEeecCCCCCcccccccccccCCCCCCCCCCC
Q 038430 443 STCRLECLKNFQ-LIRKCGIEGLSNVSHLDEAERLELKNM-ENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGG 520 (677)
Q Consensus 443 ~~~~~~~L~~l~-~L~~L~i~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (677)
.......+..+. +|+.|+++++.-...........+..+ ++|+.|++++|....
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~------------------------ 210 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL------------------------ 210 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG------------------------
T ss_pred HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh------------------------
Confidence 011123334444 777777777532222223333345555 478888887761110
Q ss_pred cccccCCccccchhhhhhcchhhHHHHhhhcCC-CCCCcEEEEecCCCCCCCh-----hHhhccCCCeEEEeCCC--CC-
Q 038430 521 YKEEKGGKVVDGEYEERRRKNEKDEQLLEALQP-PLNVEKLWILFNGGNILPK-----WLTSLTNLSDLKLVFCE--NC- 591 (677)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~lp~-----~~~~l~~L~~L~l~~c~--~~- 591 (677)
.....+...+.. +++|+.|+|++|.+...+. .+..+++|++|++++|. .+
T Consensus 211 ---------------------~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~ 269 (362)
T 3goz_A 211 ---------------------KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMS 269 (362)
T ss_dssp ---------------------SCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCC
T ss_pred ---------------------hHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccC
Confidence 112223333333 3578888888887765543 22366778888888773 11
Q ss_pred ----CcCC-CCCCcc-cceeeccc
Q 038430 592 ----EQLP-PLGKLP-LEKLELCH 609 (677)
Q Consensus 592 ----~~l~-~l~~l~-L~~L~l~~ 609 (677)
..++ .+..++ |+.|++++
T Consensus 270 ~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 270 KEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp HHHHHHHHTTSTTCCEEEEECTTS
T ss_pred HHHHHHHHHHhccCCceEEEecCC
Confidence 1111 245667 77777776
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-13 Score=150.71 Aligned_cols=170 Identities=21% Similarity=0.225 Sum_probs=106.4
Q ss_pred ccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCccccccc
Q 038430 322 IHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLK 401 (677)
Q Consensus 322 ~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~ 401 (677)
+..+++|+.|++++ +.+..+| .+..+++|+.|+|++|.+..+|+ +..+++|+.|+|++|. +..+| .+..++
T Consensus 39 ~~~L~~L~~L~l~~-----n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~ 109 (605)
T 1m9s_A 39 QNELNSIDQIIANN-----SDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLK 109 (605)
T ss_dssp HHHHTTCCCCBCTT-----CCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCT
T ss_pred hhcCCCCCEEECcC-----CCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCC
Confidence 34456666666663 3344444 36667777777777777766655 6677777777777766 55555 366677
Q ss_pred ccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCC
Q 038430 402 NMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNM 481 (677)
Q Consensus 402 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~ 481 (677)
+|++|++++|. +..+| .+..+++|+.|++.++.... + ..+..+
T Consensus 110 ~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~------------------------------l-----~~l~~l 152 (605)
T 1m9s_A 110 KLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITD------------------------------I-----TVLSRL 152 (605)
T ss_dssp TCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCC------------------------------C-----GGGGSC
T ss_pred CCCEEEecCCC-CCCCc-cccCCCccCEEECCCCccCC------------------------------c-----hhhccc
Confidence 77777777663 33332 35555555555554433221 1 224556
Q ss_pred cccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEE
Q 038430 482 ENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLW 561 (677)
Q Consensus 482 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 561 (677)
++|+.|+|+.|.... +.. +..+++|+.|+
T Consensus 153 ~~L~~L~Ls~N~l~~--------------------------------------------------~~~-l~~l~~L~~L~ 181 (605)
T 1m9s_A 153 TKLDTLSLEDNQISD--------------------------------------------------IVP-LAGLTKLQNLY 181 (605)
T ss_dssp TTCSEEECCSSCCCC--------------------------------------------------CGG-GTTCTTCCEEE
T ss_pred CCCCEEECcCCcCCC--------------------------------------------------chh-hccCCCCCEEE
Confidence 777777777661111 011 55678899999
Q ss_pred EecCCCCCCChhHhhccCCCeEEEeCCC
Q 038430 562 ILFNGGNILPKWLTSLTNLSDLKLVFCE 589 (677)
Q Consensus 562 l~~~~~~~lp~~~~~l~~L~~L~l~~c~ 589 (677)
|++|.+..+| .+..+++|+.|+|++|.
T Consensus 182 Ls~N~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 182 LSKNHISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCSSCCCBCG-GGTTCTTCSEEECCSEE
T ss_pred CcCCCCCCCh-HHccCCCCCEEEccCCc
Confidence 9998888775 57888999999998883
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-13 Score=134.28 Aligned_cols=169 Identities=19% Similarity=0.252 Sum_probs=92.8
Q ss_pred EEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccch-hhccCCCcCEEE
Q 038430 306 RHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLD 383 (677)
Q Consensus 306 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~ 383 (677)
+.+++.++.+..+|..+. ++++.|++++ +.+..+ +..++.+++|++|++++|.++.+++ .+.++++|++|+
T Consensus 17 ~~l~~~~~~l~~~p~~~~--~~l~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP--ADTEKLDLQS-----TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp TEEECTTCCCSSCCSCCC--TTCCEEECTT-----SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred eEEecCCCCccccCCCCC--CCCCEEEccC-----CCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 345555556666664443 4566666664 222222 2345666666666666666665443 356666666666
Q ss_pred ecCCCCccccCc-ccccccccceeecCccCCCcccCCc-CCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 384 IRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 384 L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
+++|. +..+|. .+..+++|++|++++| .+..+|.. ++.+++|++|++.++.... .....+..+++|+.|++
T Consensus 90 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 90 LANNQ-LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQS-----IPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEEC
T ss_pred CCCCc-ccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCc-----cCHHHcCcCcCCCEEEC
Confidence 66666 444443 3556666666666666 34444433 4566666666666655442 12234555666666666
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
++.. +.......+..+++|+.|++++|
T Consensus 163 ~~N~----l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 163 STNQ----LQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CSSC----CSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCCc----CCccCHHHHhCCCCCCEEEeeCC
Confidence 5532 11222234556677777777766
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-13 Score=128.15 Aligned_cols=81 Identities=22% Similarity=0.207 Sum_probs=47.7
Q ss_pred CCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCcc
Q 038430 351 GKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTL 430 (677)
Q Consensus 351 ~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 430 (677)
+.+++|++|++++|.++.+| .+..+++|++|++++|. +..++ .+..+++|++|++++|......|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 44566666666666666665 56666666666666664 44444 36666666666666664333345555555555555
Q ss_pred Ccee
Q 038430 431 DKFA 434 (677)
Q Consensus 431 ~l~~ 434 (677)
++.+
T Consensus 118 ~Ls~ 121 (197)
T 4ezg_A 118 DISH 121 (197)
T ss_dssp ECCS
T ss_pred EecC
Confidence 5443
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.43 E-value=4.7e-13 Score=132.41 Aligned_cols=104 Identities=20% Similarity=0.177 Sum_probs=80.3
Q ss_pred CcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccch-hhccCCCcCEEEecCCCCccccC-ccccccccc
Q 038430 326 NRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELP-TGIGKLKNM 403 (677)
Q Consensus 326 ~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L 403 (677)
...++++++ +..+..+|..+. .+|+.|++++|.+..+++ .+.++++|++|++++|. +..++ ..+..+++|
T Consensus 14 ~~~~~l~~~-----~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 85 (251)
T 3m19_A 14 EGKKEVDCQ-----GKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTEL 85 (251)
T ss_dssp GGGTEEECT-----TCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTC
T ss_pred CCCeEEecC-----CCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcC
Confidence 457788887 456777887665 689999999999987655 58999999999999998 55554 457899999
Q ss_pred ceeecCccCCCcccC-CcCCCCCCCCccCceeeCCC
Q 038430 404 RSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 404 ~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~ 438 (677)
++|++++|. +..+| ..++.+++|++|++.++...
T Consensus 86 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 86 GTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLK 120 (251)
T ss_dssp CEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEECCCCc-ccccChhHhcccCCCCEEEcCCCcCC
Confidence 999999995 44554 45678888888887766543
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.42 E-value=5.8e-13 Score=134.76 Aligned_cols=166 Identities=21% Similarity=0.245 Sum_probs=135.1
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+++.|++.++.+..++ .+..+++|++|++++ +.+..++. +..+++|++|++++|.++.+|. +..+++|++
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~-----n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNG-----NKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCS-----SCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccC-----CccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence 457889999999998886 588899999999995 44555655 8899999999999999988764 899999999
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++++|. +..++ .+..+++|++|++++|. +..+ ..++.+++|+.|++.++.... +..+..+++|+.|++
T Consensus 117 L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~-------~~~l~~l~~L~~L~L 185 (291)
T 1h6t_A 117 LSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISD-------IVPLAGLTKLQNLYL 185 (291)
T ss_dssp EECTTSC-CCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCC-------CGGGTTCTTCCEEEC
T ss_pred EECCCCc-CCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCcccc-------chhhcCCCccCEEEC
Confidence 9999998 77775 48899999999999994 5555 568899999999999887653 223888899999999
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
++.. +..+ ..+..+++|+.|++++|
T Consensus 186 ~~N~-i~~l-----~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 186 SKNH-ISDL-----RALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CSSC-CCBC-----GGGTTCTTCSEEEEEEE
T ss_pred CCCc-CCCC-----hhhccCCCCCEEECcCC
Confidence 8753 2222 23788999999999988
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-13 Score=150.38 Aligned_cols=187 Identities=19% Similarity=0.136 Sum_probs=126.9
Q ss_pred ceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEE
Q 038430 304 KVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLD 383 (677)
Q Consensus 304 ~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~ 383 (677)
+++.|++.++.+..+|..+ +++|++|++++ +.+..+| ..+++|++|++++|.++.+|. +.+ +|++|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~-----N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQ-----NALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCS-----SCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEE
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcC-----CCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEE
Confidence 6778888888888788655 37888888885 3445676 457888888888888888877 655 888888
Q ss_pred ecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 384 IRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 384 L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
+++|. +..+|. .+++|++|++++|. +..+|. .+++|++|++.+|.....+ .+.
T Consensus 127 Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp-------~l~------------ 179 (571)
T 3cvr_A 127 VDNNQ-LTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLP-------ELP------------ 179 (571)
T ss_dssp CCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCC-------CCC------------
T ss_pred CCCCc-CCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcc-------hhh------------
Confidence 88887 667877 67888888888884 555775 4667777777666543210 011
Q ss_pred ccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhh
Q 038430 464 LSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEK 543 (677)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (677)
++|+.|++++|.... .| .
T Consensus 180 ------------------~~L~~L~Ls~N~L~~-lp-----------------------~-------------------- 197 (571)
T 3cvr_A 180 ------------------ESLEALDVSTNLLES-LP-----------------------A-------------------- 197 (571)
T ss_dssp ------------------TTCCEEECCSSCCSS-CC-----------------------C--------------------
T ss_pred ------------------CCCCEEECcCCCCCc-hh-----------------------h--------------------
Confidence 345555555551110 00 0
Q ss_pred HHHHhhh-cCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCC
Q 038430 544 DEQLLEA-LQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLP 595 (677)
Q Consensus 544 ~~~~~~~-l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~ 595 (677)
+... ...++.|+.|+|++|.+..+|.++..+++|+.|+|++|.....+|
T Consensus 198 ---~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 198 ---VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp ---CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ---HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 0000 122345699999999999999999999999999999995444433
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-14 Score=150.65 Aligned_cols=238 Identities=10% Similarity=0.047 Sum_probs=159.2
Q ss_pred cCCCceEEEEEEecCCCccc-----ccccCCC-cccEEEeCCCCCCCCCCccC-CcccCCC-----CCcCEEEecCcccc
Q 038430 300 AFGGKVRHLGLKFKGGASFP-----MSIHGLN-RLRTLLIDDESPPNSSLDKI-PENVGKL-----MHLKYLNLSELHIE 367 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p-----~~~~~l~-~L~~L~l~~~~l~~~~~~~l-p~~~~~l-----~~L~~L~Ls~~~i~ 367 (677)
..+..++.|++++|.+...+ ..+..++ +|++|++++|. +... +..+..+ ++|++|++++|.++
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-----l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-----LGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-----GGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-----CCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 34567999999999987765 5677888 89999999733 3322 3334443 89999999999988
Q ss_pred ccch-h----hccC-CCcCEEEecCCCCccccCc-c----ccc-ccccceeecCccCCCc----ccCCcCCCCC-CCCcc
Q 038430 368 RLPK-T----LCEL-YNLQKLDIRGCRNLRELPT-G----IGK-LKNMRSLLNGLTCSLK----YMPIGISKLT-SLRTL 430 (677)
Q Consensus 368 ~lp~-~----i~~l-~~L~~L~L~~~~~l~~lp~-~----i~~-l~~L~~L~l~~~~~~~----~~p~~i~~l~-~L~~L 430 (677)
..+. . +..+ ++|++|++++|. +...+. . +.. .++|++|++++|.... .++..+..+. +|++|
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 5433 2 4455 899999999998 665543 2 333 3699999999995332 3344445554 89999
Q ss_pred CceeeCCCcCCCCcccccccccC-CcCCcccccCccCCCChhHHHHhhccC-CcccCceEEEeecCCCCCcccccccccc
Q 038430 431 DKFAVGGGVDGGSTCRLECLKNF-QLIRKCGIEGLSNVSHLDEAERLELKN-MENLLHLYLWFEVVDREDEDWEDEEENE 508 (677)
Q Consensus 431 ~l~~~~~~~~~~~~~~~~~L~~l-~~L~~L~i~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 508 (677)
++.++...... .......+..+ ++|+.|+++++.-...........+.. .++|+.|++++|....
T Consensus 173 ~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~------------ 239 (362)
T 3goz_A 173 NLRGNNLASKN-CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG------------ 239 (362)
T ss_dssp ECTTSCGGGSC-HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC------------
T ss_pred eecCCCCchhh-HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc------------
Confidence 99888765310 01112234455 589999998853222222233444544 4699999999882221
Q ss_pred cCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCCh--------hHhhccCC
Q 038430 509 DEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPK--------WLTSLTNL 580 (677)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~--------~~~~l~~L 580 (677)
.....+...+..+++|+.|++++|.+..++. .+..+++|
T Consensus 240 ---------------------------------~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L 286 (362)
T 3goz_A 240 ---------------------------------PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286 (362)
T ss_dssp ---------------------------------CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE
T ss_pred ---------------------------------HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce
Confidence 1223444566778899999999998554432 33467889
Q ss_pred CeEEEeCCC
Q 038430 581 SDLKLVFCE 589 (677)
Q Consensus 581 ~~L~l~~c~ 589 (677)
+.|++++|.
T Consensus 287 ~~LdL~~N~ 295 (362)
T 3goz_A 287 ILVDKNGKE 295 (362)
T ss_dssp EEECTTSCB
T ss_pred EEEecCCCc
Confidence 999999984
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.5e-13 Score=126.11 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=98.0
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccc-cchhhccCCCcC
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIER-LPKTLCELYNLQ 380 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~-lp~~i~~l~~L~ 380 (677)
..+++.|+++++.+..+| .+..+++|++|++++| .+..+ ..+..+++|++|++++|.++. .|..++++++|+
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-----~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-----HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-----CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-----CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 446788888888888877 6888888888888862 33333 367888888888888888874 677788888888
Q ss_pred EEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCC
Q 038430 381 KLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~ 438 (677)
+|++++|......|..++.+++|++|++++|..+..+| .+..+++|+.|++.++...
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence 88888888444567778888888888888885466666 5777777777777665543
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-13 Score=152.72 Aligned_cols=166 Identities=21% Similarity=0.219 Sum_probs=126.9
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
...++.|++.++.+..++ .+..+++|+.|++++ +.+..+|. +..+++|++|+|++|.+..+| .+..+++|++
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~-----N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNG-----NKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTT-----SCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeC-----CCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 567889999999998887 688999999999996 34555655 889999999999999999876 6899999999
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|+|++|. +..+|. +..|++|+.|++++|. +..+ ..++.+++|+.|++.++.... +..+..+++|+.|++
T Consensus 114 L~Ls~N~-l~~l~~-l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~-------~~~l~~l~~L~~L~L 182 (605)
T 1m9s_A 114 LSLEHNG-ISDING-LVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISD-------IVPLAGLTKLQNLYL 182 (605)
T ss_dssp EECTTSC-CCCCGG-GGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCC-------CGGGTTCTTCCEEEC
T ss_pred EEecCCC-CCCCcc-ccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCC-------chhhccCCCCCEEEC
Confidence 9999998 777764 9999999999999994 5555 568889999999988776543 112666666666666
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
+++.- ..+ ..+..+++|+.|+|++|
T Consensus 183 s~N~i-~~l-----~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 183 SKNHI-SDL-----RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CSSCC-CBC-----GGGTTCTTCSEEECCSE
T ss_pred cCCCC-CCC-----hHHccCCCCCEEEccCC
Confidence 65321 111 12455555666665555
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-12 Score=140.81 Aligned_cols=174 Identities=19% Similarity=0.142 Sum_probs=129.3
Q ss_pred CcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccce
Q 038430 326 NRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRS 405 (677)
Q Consensus 326 ~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 405 (677)
.+|+.|++++ +.+..+|..+. ++|++|++++|.++.+| ..+++|++|++++|. +..+|. +.. +|++
T Consensus 59 ~~L~~L~Ls~-----n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~ 124 (571)
T 3cvr_A 59 NQFSELQLNR-----LNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKH 124 (571)
T ss_dssp TTCSEEECCS-----SCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCE
T ss_pred CCccEEEeCC-----CCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCE
Confidence 3899999986 34556787663 78999999999999998 568999999999998 777888 665 9999
Q ss_pred eecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcccC
Q 038430 406 LLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLL 485 (677)
Q Consensus 406 L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~ 485 (677)
|++++|. +..+|. .+++|+.|++.++.... +.. .+++|+
T Consensus 125 L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~l~~-------lp~------------------------------~l~~L~ 163 (571)
T 3cvr_A 125 LDVDNNQ-LTMLPE---LPALLEYINADNNQLTM-------LPE------------------------------LPTSLE 163 (571)
T ss_dssp EECCSSC-CSCCCC---CCTTCCEEECCSSCCSC-------CCC------------------------------CCTTCC
T ss_pred EECCCCc-CCCCCC---cCccccEEeCCCCccCc-------CCC------------------------------cCCCcC
Confidence 9999994 555776 57788888776654331 000 235677
Q ss_pred ceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecC
Q 038430 486 HLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFN 565 (677)
Q Consensus 486 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 565 (677)
.|++++|.... ++. +. ++|+.|+|++|
T Consensus 164 ~L~Ls~N~L~~--------------------------------------------------lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 164 VLSVRNNQLTF--------------------------------------------------LPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp EEECCSSCCSC--------------------------------------------------CCC-CC--TTCCEEECCSS
T ss_pred EEECCCCCCCC--------------------------------------------------cch-hh--CCCCEEECcCC
Confidence 77777661111 111 22 78999999999
Q ss_pred CCCCCChhHhhccCC-------CeEEEeCCCCCCcCCC-CCCcc-cceeeccccc
Q 038430 566 GGNILPKWLTSLTNL-------SDLKLVFCENCEQLPP-LGKLP-LEKLELCHLK 611 (677)
Q Consensus 566 ~~~~lp~~~~~l~~L-------~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~ 611 (677)
.+..+|. +.. +| +.|+|++| .+..+|. +..++ |+.|+|++++
T Consensus 191 ~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 191 LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CCSSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred CCCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence 9999987 543 66 99999998 7778886 77799 9999999854
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-12 Score=119.27 Aligned_cols=130 Identities=25% Similarity=0.200 Sum_probs=111.0
Q ss_pred CCceEEEEEEecCCC--cccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccc-cchhhccCCC
Q 038430 302 GGKVRHLGLKFKGGA--SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIER-LPKTLCELYN 378 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~--~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~-lp~~i~~l~~ 378 (677)
+.+++.|++.+|.+. .+|..+..+++|++|++++|. +..+ ..++.+++|++|++++|.++. +|..+.++++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-----l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-----LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-----CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-----CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 678999999999987 888888999999999999643 4444 668899999999999999986 7777888999
Q ss_pred cCEEEecCCCCccccC--cccccccccceeecCccCCCcccCC----cCCCCCCCCccCceeeCCCc
Q 038430 379 LQKLDIRGCRNLRELP--TGIGKLKNMRSLLNGLTCSLKYMPI----GISKLTSLRTLDKFAVGGGV 439 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~l~~~~~~~ 439 (677)
|++|++++|. +..+| ..+..+++|++|++++| .+..+|. .+..+++|++|++..+....
T Consensus 97 L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 97 LTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 9999999998 77776 67899999999999999 4566666 68899999999998877653
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-12 Score=128.62 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=36.5
Q ss_pred cCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccceeecCcc
Q 038430 350 VGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLT 411 (677)
Q Consensus 350 ~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 411 (677)
+..+++|++|++++|.++.+| .+..+++|++|++++|. +..+|. +..+++|++|++++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSS
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCC
Confidence 455666666666666666555 45666666666666665 555555 666666666666666
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.35 E-value=9.5e-13 Score=131.05 Aligned_cols=161 Identities=17% Similarity=0.154 Sum_probs=115.2
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecC
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRG 386 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~ 386 (677)
.+.+..+.+..++ .+..+++|++|++++ +.+..+| .++.+++|++|++++|.++.+|+ +.++++|++|++++
T Consensus 23 ~l~l~~~~i~~~~-~~~~l~~L~~L~l~~-----n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 23 KQNLGKQSVTDLV-SQKELSGVQNFNGDN-----SNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHTCSCTTSEE-CHHHHTTCSEEECTT-----SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHhcCCCccccc-chhhcCcCcEEECcC-----CCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 3344455555555 566778888888875 3455565 57778888888888888887776 88888888888888
Q ss_pred CCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccC
Q 038430 387 CRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSN 466 (677)
Q Consensus 387 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~ 466 (677)
|. +..+|... . ++|++|++++| .+..+| .++.+++|+.|++.++.... +..+..+++|+.|++++..-
T Consensus 95 N~-l~~l~~~~-~-~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~i~~-------~~~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 95 NR-LKNLNGIP-S-ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNNKLKS-------IVMLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp SC-CSCCTTCC-C-SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTSCCCB-------CGGGGGCTTCCEEECTTSCC
T ss_pred Cc-cCCcCccc-c-CcccEEEccCC-ccCCCh-hhcCcccccEEECCCCcCCC-------ChHHccCCCCCEEECCCCcC
Confidence 87 77777633 3 78888888888 455554 47788888888887776553 24677788888888877432
Q ss_pred CCChhHHHHhhccCCcccCceEEEeec
Q 038430 467 VSHLDEAERLELKNMENLLHLYLWFEV 493 (677)
Q Consensus 467 ~~~~~~~~~~~l~~~~~L~~L~l~~~~ 493 (677)
... ..+..+++|+.|++++|.
T Consensus 163 ----~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 163 ----TNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp ----CBC--TTSTTCCCCCEEEEEEEE
T ss_pred ----cch--HHhccCCCCCEEeCCCCc
Confidence 111 457788999999999883
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.7e-13 Score=152.57 Aligned_cols=153 Identities=20% Similarity=0.183 Sum_probs=63.1
Q ss_pred CceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEE
Q 038430 303 GKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKL 382 (677)
Q Consensus 303 ~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L 382 (677)
.+++.|++.++.+...+..+.....|+.+.+....+.++.+...|..+..+..|+.|+|++|.+..+|..+.++++|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 34556666666555544443333344444433322223333334455566666666666666666666666666666666
Q ss_pred EecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccccc
Q 038430 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIE 462 (677)
Q Consensus 383 ~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~ 462 (677)
+|++|. +..+|..++.|++|++|++++|. +..+|..++.|++|++|++.++.... ....+..+.+|+.|+++
T Consensus 253 ~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~------lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 253 YLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVTT------LPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp BCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCCCC------CCSSTTSCTTCCCEECT
T ss_pred EeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCCCc------cChhhhcCCCccEEeCC
Confidence 666665 55666666666666666666663 44566666666666666666554432 22335555566666665
Q ss_pred C
Q 038430 463 G 463 (677)
Q Consensus 463 ~ 463 (677)
+
T Consensus 325 ~ 325 (727)
T 4b8c_D 325 G 325 (727)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.31 E-value=7.9e-12 Score=120.80 Aligned_cols=86 Identities=22% Similarity=0.272 Sum_probs=38.3
Q ss_pred cCCCCCcCEEEecCcccccc-chhhccCCCcCEEEecCCCCccccCcc-cccccccceeecCccCCCcccCCcCCCCCCC
Q 038430 350 VGKLMHLKYLNLSELHIERL-PKTLCELYNLQKLDIRGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPIGISKLTSL 427 (677)
Q Consensus 350 ~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L 427 (677)
+..+++|++|+|++|.++.+ |..+.++++|++|+|++|. +..+|.. +..+++|++|++++|......|..+..+++|
T Consensus 52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 130 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL 130 (220)
T ss_dssp STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC
Confidence 44444455555555444433 3344444555555555444 4444432 3444445555554443222223334444444
Q ss_pred CccCceeeC
Q 038430 428 RTLDKFAVG 436 (677)
Q Consensus 428 ~~L~l~~~~ 436 (677)
+.|++.++.
T Consensus 131 ~~L~L~~N~ 139 (220)
T 2v9t_B 131 NLLSLYDNK 139 (220)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 444444443
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-13 Score=153.97 Aligned_cols=134 Identities=15% Similarity=0.105 Sum_probs=72.2
Q ss_pred CCCCcCEEEecCcccc-ccchhhc-cCCCcCEEEecCCCCccc--cCcccccccccceeecCccCCCcc----cCCcCCC
Q 038430 352 KLMHLKYLNLSELHIE-RLPKTLC-ELYNLQKLDIRGCRNLRE--LPTGIGKLKNMRSLLNGLTCSLKY----MPIGISK 423 (677)
Q Consensus 352 ~l~~L~~L~Ls~~~i~-~lp~~i~-~l~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~----~p~~i~~ 423 (677)
.+++|++|++++|.++ ..+..+. .+++|++|++++|..+.. ++..+.++++|++|++++|..... ++.....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 4567777777777665 2333443 567777777777743443 444445677777777777641111 2222335
Q ss_pred CCCCCccCceeeCCCcCCCCcccccc-cccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 424 LTSLRTLDKFAVGGGVDGGSTCRLEC-LKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 424 l~~L~~L~l~~~~~~~~~~~~~~~~~-L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
+++|++|++..+.... ....+.. ...+++|+.|.+.++.. ... ....+..+++|+.|.+..+
T Consensus 183 ~~~L~~L~l~~~~~~~---~~~~l~~l~~~~~~L~~L~L~~~~~---~~~-l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 183 YTSLVSLNISCLASEV---SFSALERLVTRCPNLKSLKLNRAVP---LEK-LATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CCCCCEEECTTCCSCC---CHHHHHHHHHHCTTCCEEECCTTSC---HHH-HHHHHHHCTTCSEEECSBC
T ss_pred CCcCcEEEecccCCcC---CHHHHHHHHHhCCCCcEEecCCCCc---HHH-HHHHHhcCCcceEcccccc
Confidence 5667777666554100 0111222 23456677777766422 222 3344556677777776544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=9.1e-15 Score=161.56 Aligned_cols=108 Identities=21% Similarity=0.273 Sum_probs=82.7
Q ss_pred cCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCccccCCCCCCC
Q 038430 551 LQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDD 629 (677)
Q Consensus 551 l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 629 (677)
+..+++|+.|+|++|.+..+|..++.+++|+.|+|++| .+..+|.++.++ |+.|+|++ +.++.+.
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~Ls~-N~l~~~~------------ 524 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDGVANLPRLQELLLCN-NRLQQSA------------ 524 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCS-SCCCSSS------------
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCcccCCCCCCcEEECCC-CCCCCCC------------
Confidence 55678999999999999999999999999999999998 677788899999 99999997 4455542
Q ss_pred CCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 630 PSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 630 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
.|.....+++|+.|++++++-...+.........+|+|+.|++
T Consensus 525 -----~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 525 -----AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -----TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -----CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 0222467999999999998773332211122235899999864
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.30 E-value=6.6e-12 Score=121.33 Aligned_cols=131 Identities=19% Similarity=0.216 Sum_probs=110.7
Q ss_pred CCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchh-hccCC
Q 038430 301 FGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKT-LCELY 377 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~ 377 (677)
++..++.|++.+|.+..++ ..|..+++|++|++++ +.+..+ |..|..+++|++|+|++|.++.+|+. +.+++
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~-----N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-----NQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF 104 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCS-----SCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC-----CcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC
Confidence 4678999999999998887 4789999999999996 334444 67899999999999999999999876 68999
Q ss_pred CcCEEEecCCCCcccc-CcccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeCCC
Q 038430 378 NLQKLDIRGCRNLREL-PTGIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 378 ~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~ 438 (677)
+|++|+|++|. +..+ |..+..+++|++|++++|. +..+| ..+..+++|++|++.++...
T Consensus 105 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 105 SLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 99999999999 5555 5679999999999999995 55555 45888999999998877643
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.3e-12 Score=121.12 Aligned_cols=121 Identities=27% Similarity=0.375 Sum_probs=58.4
Q ss_pred EEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchh-hccCCCcCEEEec
Q 038430 308 LGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKT-LCELYNLQKLDIR 385 (677)
Q Consensus 308 L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~L~ 385 (677)
++..++.+..+|..+. ++|++|++++ +.+..+ |..+..+++|++|+|++|.+..+|.. +..+++|++|+|+
T Consensus 24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP--TNAQILYLHD-----NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eEccCCCcCccCCCCC--CCCCEEEcCC-----CccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3444444444543332 4555555553 122222 33445555555555555555544433 3555555555555
Q ss_pred CCCCccccCcc-cccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCC
Q 038430 386 GCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGG 437 (677)
Q Consensus 386 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~ 437 (677)
+|. +..+|.. +..+++|++|++++| .+..+|..+..+++|++|++.++..
T Consensus 97 ~N~-l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 97 TNQ-LTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQL 147 (229)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCC
T ss_pred CCc-CCccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCcC
Confidence 554 4444332 345555555555555 2345555555555555555554443
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-12 Score=116.64 Aligned_cols=124 Identities=24% Similarity=0.255 Sum_probs=100.4
Q ss_pred CCceEEEEEEecCCC--cccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccc-cchhhccCCC
Q 038430 302 GGKVRHLGLKFKGGA--SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIER-LPKTLCELYN 378 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~--~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~-lp~~i~~l~~ 378 (677)
+.+++.|+++++.+. .+|..+..+++|++|++++| .+..+ ..++.+++|++|++++|.++. +|..++.+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-----~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-----GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-----CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-----CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 567889999999887 78888888999999999863 34444 567889999999999999886 7777888999
Q ss_pred cCEEEecCCCCccccC--cccccccccceeecCccCCCcccCC----cCCCCCCCCccCce
Q 038430 379 LQKLDIRGCRNLRELP--TGIGKLKNMRSLLNGLTCSLKYMPI----GISKLTSLRTLDKF 433 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~l~ 433 (677)
|++|++++|. +..+| ..++.+++|++|++++| .+..+|. .++.+++|+.|++.
T Consensus 90 L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 9999999998 66654 67889999999999998 4555654 57778888887764
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.29 E-value=9.7e-12 Score=121.00 Aligned_cols=131 Identities=24% Similarity=0.327 Sum_probs=112.3
Q ss_pred cCCCceEEEEEEecCCCcc-cccccCCCcccEEEeCCCCCCCCCCccCCcc-cCCCCCcCEEEecCccccccchh-hccC
Q 038430 300 AFGGKVRHLGLKFKGGASF-PMSIHGLNRLRTLLIDDESPPNSSLDKIPEN-VGKLMHLKYLNLSELHIERLPKT-LCEL 376 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~~l~~L~~L~Ls~~~i~~lp~~-i~~l 376 (677)
..+.+++.|++++|.+..+ |..+..+++|++|++++ +.+..+|.. +..+++|++|+|++|.++.+|+. +..+
T Consensus 37 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-----N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 111 (229)
T 3e6j_A 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGS-----NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRL 111 (229)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCC-----CCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcc
Confidence 3468899999999999887 57789999999999996 445667644 68999999999999999988765 7899
Q ss_pred CCcCEEEecCCCCccccCcccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeCC
Q 038430 377 YNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGG 437 (677)
Q Consensus 377 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~ 437 (677)
++|++|++++|. +..+|..+..+++|++|++++| .+..+| ..+..+++|+.|++.++..
T Consensus 112 ~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 112 VHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred hhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 999999999998 8899999999999999999999 455666 4578889999988876654
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.7e-12 Score=122.93 Aligned_cols=121 Identities=26% Similarity=0.409 Sum_probs=83.3
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccchh-hccCCCcCEEEe
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLPKT-LCELYNLQKLDI 384 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~L 384 (677)
.+...++++..+|..+ .++|++|+++++ .+..+|. .++.+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETN-----SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSS-----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCC-----ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 4566666777777444 357888888853 3444544 357788888888888888877664 577888888888
Q ss_pred cCCCCccccCcc-cccccccceeecCccCCCcccCCc-CCCCCCCCccCceeeC
Q 038430 385 RGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVG 436 (677)
Q Consensus 385 ~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~ 436 (677)
++|. +..+|.. ++.+++|++|++++|. +..+|.. ++.+++|++|++.++.
T Consensus 84 s~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 84 STNQ-LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCc-CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc
Confidence 8887 6666654 5778888888888874 4445443 5667777777665544
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-11 Score=119.11 Aligned_cols=124 Identities=14% Similarity=0.131 Sum_probs=68.3
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccC-C-cccCCCCCcCEEEecCccccccch-hhccCCCcCEEE
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKI-P-ENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLD 383 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p-~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~ 383 (677)
.++++++.+..+|..+. ..+++|++++ +.+..+ | ..+..+++|++|++++|.++.+++ .+.++++|++|+
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~-----N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNN-----NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCS-----SCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCC-----CcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 45555666666654432 3345666663 233333 2 224566666666666666665544 466666666666
Q ss_pred ecCCCCccccCc-ccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCC
Q 038430 384 IRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 384 L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~ 438 (677)
|++|. +..+|. .+..+++|++|++++|......|..+..+++|++|++.++...
T Consensus 88 Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 88 LTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp CCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred CCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence 66666 444433 3566666666666666433333455666666666665555443
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=119.28 Aligned_cols=133 Identities=18% Similarity=0.128 Sum_probs=111.3
Q ss_pred cCCCceEEEEEEecCCCccc--ccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccchh-hcc
Q 038430 300 AFGGKVRHLGLKFKGGASFP--MSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLPKT-LCE 375 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p--~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp~~-i~~ 375 (677)
.++..++.|++++|.+..++ ..+..+++|++|++++ +.+..++. .+..+++|++|+|++|.++.+|+. +.+
T Consensus 29 ~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~-----N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 103 (220)
T 2v70_A 29 HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN-----NKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG 103 (220)
T ss_dssp CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS-----SCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT
T ss_pred CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCC-----CcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC
Confidence 34667889999999998874 4588999999999995 44555554 689999999999999999987664 899
Q ss_pred CCCcCEEEecCCCCcccc-CcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCC
Q 038430 376 LYNLQKLDIRGCRNLREL-PTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 376 l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~ 438 (677)
+++|++|+|++|. +..+ |..+..+++|++|++++|......|..+..+++|++|++.++...
T Consensus 104 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 104 LESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999999999999 5555 678999999999999999655445788999999999998877654
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.26 E-value=9.7e-12 Score=119.08 Aligned_cols=131 Identities=28% Similarity=0.403 Sum_probs=108.7
Q ss_pred cCCCceEEEEEEecCCCcccc-cccCCCcccEEEeCCCCCCCCCCccCCcc-cCCCCCcCEEEecCccccccchh-hccC
Q 038430 300 AFGGKVRHLGLKFKGGASFPM-SIHGLNRLRTLLIDDESPPNSSLDKIPEN-VGKLMHLKYLNLSELHIERLPKT-LCEL 376 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~~l~~L~~L~Ls~~~i~~lp~~-i~~l 376 (677)
..+.+++.|++.++.+..++. .+..+++|++|++++ +.+..+|.. +..+++|++|++++|.++.+|+. +.++
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 99 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG-----NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCC-----CccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCc
Confidence 346789999999999988874 578999999999996 345566554 68899999999999999988765 7899
Q ss_pred CCcCEEEecCCCCccccCcc-cccccccceeecCccCCCcccCCc-CCCCCCCCccCceeeCC
Q 038430 377 YNLQKLDIRGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGG 437 (677)
Q Consensus 377 ~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~ 437 (677)
++|++|++++|. +..+|.. +..+++|++|++++|. +..+|.. +..+++|+.|++.++..
T Consensus 100 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 100 TQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCe
Confidence 999999999998 7777664 7899999999999995 5556654 78899999999887654
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.24 E-value=6e-12 Score=143.42 Aligned_cols=119 Identities=20% Similarity=0.153 Sum_probs=83.6
Q ss_pred cCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccc
Q 038430 313 KGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRE 392 (677)
Q Consensus 313 ~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~ 392 (677)
+.+...+..+..++.|+.|++++ +.+..+|..+..+++|++|+|++|.|+.+|..|++|++|++|+|++|. +..
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~-----n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~ 284 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSN-----LQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTS 284 (727)
T ss_dssp -----------CCCCCCEEECTT-----SCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSS
T ss_pred cceecChhhhccCCCCcEEECCC-----CCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCc
Confidence 33333456677778888888874 345567777777888888888888888888778888888888888887 667
Q ss_pred cCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCC
Q 038430 393 LPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 393 lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~ 438 (677)
+|..++.|++|++|++++| .+..+|..++.+++|++|++.++...
T Consensus 285 lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred cChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccC
Confidence 7887888888888888887 45677877888888888887776654
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-11 Score=115.06 Aligned_cols=127 Identities=22% Similarity=0.164 Sum_probs=93.4
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhh-ccCCCcC
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTL-CELYNLQ 380 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i-~~l~~L~ 380 (677)
..+++.|++++|.+..+|......++|++|++++| .+..+ ..++.+++|++|++++|.++.+|+.+ +.+++|+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-----~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-----EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-----CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-----CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 56788888888888777643333348888888853 34444 46778888888888888888777654 7888888
Q ss_pred EEEecCCCCccccCc--ccccccccceeecCccCCCcccCCc----CCCCCCCCccCceeeC
Q 038430 381 KLDIRGCRNLRELPT--GIGKLKNMRSLLNGLTCSLKYMPIG----ISKLTSLRTLDKFAVG 436 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~L~l~~~~ 436 (677)
+|++++|. +..+|. .++.+++|++|++++|. +..+|.. ++.+++|+.|++..+.
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 88888887 677776 67888888888888884 5566654 6677777777776654
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.4e-11 Score=113.61 Aligned_cols=125 Identities=21% Similarity=0.263 Sum_probs=99.7
Q ss_pred EEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcc--cCCCCCcCEEEecCcccccc-chhhccCCCcCEE
Q 038430 306 RHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPEN--VGKLMHLKYLNLSELHIERL-PKTLCELYNLQKL 382 (677)
Q Consensus 306 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~--~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L 382 (677)
+.++++++++..+|..+.. +|++|++++ +.+..++.. ++.+++|++|+|++|.++.+ |..+.++++|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~-----n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLND-----NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCS-----CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCC-----CcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 4678888888888865543 899999985 445666543 78899999999999999866 6679999999999
Q ss_pred EecCCCCccccCc-ccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCC
Q 038430 383 DIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 383 ~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~ 438 (677)
+|++|. +..+|. .+..+++|++|++++|......|..++.+++|++|++.++...
T Consensus 84 ~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 84 QLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999998 555554 5888999999999999665566778888999999988776654
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.3e-11 Score=125.90 Aligned_cols=124 Identities=18% Similarity=0.159 Sum_probs=60.4
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcc-cC-CCCCcCEEEecCccccccch-hhccCCCcCEEE
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPEN-VG-KLMHLKYLNLSELHIERLPK-TLCELYNLQKLD 383 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~-~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~ 383 (677)
.+++.++.+..+|..+. ..++.|++++ +.+..++.. +. .+.+|++|+|++|.|+.+|+ .+.++++|++|+
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~-----N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSH-----NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCS-----SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCC-----CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 34444555555554332 2355555553 223333322 33 55555555555555554443 355555555555
Q ss_pred ecCCCCccccCc-ccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCC
Q 038430 384 IRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 384 L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~ 438 (677)
|++|. +..+|. .+..+++|++|++++|......|..+..+.+|+.|++.++...
T Consensus 95 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 95 LSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp CCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 55555 444433 3455555555555555332222444555555555555555443
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.4e-11 Score=124.93 Aligned_cols=132 Identities=20% Similarity=0.269 Sum_probs=108.4
Q ss_pred cCCCceEEEEEEecCCCcccc-ccc-CCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccch-hhcc
Q 038430 300 AFGGKVRHLGLKFKGGASFPM-SIH-GLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLPK-TLCE 375 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p~-~~~-~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~ 375 (677)
.++..++.|++++|.+..++. .+. .+++|++|++++ +.+..++ ..|..+++|++|+|++|.++.+|+ .+.+
T Consensus 36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~-----N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 110 (361)
T 2xot_A 36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH-----NHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD 110 (361)
T ss_dssp SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCS-----SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCC-----CcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCC
Confidence 456779999999999988874 455 899999999995 4455555 458999999999999999998876 4899
Q ss_pred CCCcCEEEecCCCCcccc-CcccccccccceeecCccCCCcccCCcC----CCCCCCCccCceeeCCC
Q 038430 376 LYNLQKLDIRGCRNLREL-PTGIGKLKNMRSLLNGLTCSLKYMPIGI----SKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 376 l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i----~~l~~L~~L~l~~~~~~ 438 (677)
+++|++|+|++|. +..+ |..+..+++|++|++++| .+..+|..+ ..+.+|+.|++.++...
T Consensus 111 l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 111 LQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 9999999999999 5555 667999999999999999 566777654 56888888888877655
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.16 E-value=4.2e-11 Score=110.35 Aligned_cols=107 Identities=25% Similarity=0.317 Sum_probs=86.9
Q ss_pred CCCcccEEEeCCCCCCCCCCc--cCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccc-cCcccccc
Q 038430 324 GLNRLRTLLIDDESPPNSSLD--KIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRE-LPTGIGKL 400 (677)
Q Consensus 324 ~l~~L~~L~l~~~~l~~~~~~--~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~i~~l 400 (677)
..++|+.|++++| .+. .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|. +.. +|..+..+
T Consensus 22 ~~~~L~~L~l~~n-----~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l 94 (168)
T 2ell_A 22 TPAAVRELVLDNC-----KSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEKL 94 (168)
T ss_dssp CTTSCSEEECCSC-----BCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHHC
T ss_pred CcccCCEEECCCC-----CCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhhC
Confidence 3578999999963 344 7787788899999999999999877 778999999999999998 554 77777789
Q ss_pred cccceeecCccCCCcccC--CcCCCCCCCCccCceeeCCC
Q 038430 401 KNMRSLLNGLTCSLKYMP--IGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 401 ~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~l~~~~~~ 438 (677)
++|++|++++| .+..+| ..++.+++|++|++.++...
T Consensus 95 ~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 95 PNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp TTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred CCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 99999999999 466655 56788888888887766544
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.15 E-value=3e-11 Score=108.90 Aligned_cols=128 Identities=19% Similarity=0.222 Sum_probs=97.0
Q ss_pred CCcccEEEeCCCCCCCCCCc--cCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccc-cCccccccc
Q 038430 325 LNRLRTLLIDDESPPNSSLD--KIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRE-LPTGIGKLK 401 (677)
Q Consensus 325 l~~L~~L~l~~~~l~~~~~~--~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~i~~l~ 401 (677)
.++|+.|+++++ .+. .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|. +.. +|..++.++
T Consensus 16 ~~~l~~L~l~~n-----~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNS-----RSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCP 88 (149)
T ss_dssp GGGCSEEECTTC-----BCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCT
T ss_pred CccCeEEEccCC-----cCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCC
Confidence 478999999963 333 7788889999999999999999887 778999999999999998 555 888788899
Q ss_pred ccceeecCccCCCcccC--CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccccc
Q 038430 402 NMRSLLNGLTCSLKYMP--IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIE 462 (677)
Q Consensus 402 ~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~ 462 (677)
+|++|++++|. +..+| ..++.+++|++|++.++.....+ ......+..+++|+.|+++
T Consensus 89 ~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLN--DYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGST--THHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchH--HHHHHHHHHCCCcccccCC
Confidence 99999999995 55544 67888889999888877654310 0001245556666655543
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=109.87 Aligned_cols=122 Identities=23% Similarity=0.298 Sum_probs=95.8
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccch-hhccCCCcCEEEec
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIR 385 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~ 385 (677)
.+++.++.+..+|..+. ++|++|++++ +.+..+|..+..+++|++|+|++|.|+.+++ .|.++++|++|+|+
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~-----n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDG-----NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCS-----SCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCC-----CcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 56777788888886543 5889999885 4556788888889999999999999887764 58889999999999
Q ss_pred CCCCccccCc-ccccccccceeecCccCCCcccCC-cCCCCCCCCccCceeeCC
Q 038430 386 GCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGG 437 (677)
Q Consensus 386 ~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~ 437 (677)
+|. +..+|. .+..+++|++|++++|. +..+|. .+..+++|+.|++.++..
T Consensus 87 ~N~-l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 87 YNR-LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSC-CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCc-cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 988 666654 68889999999999984 556665 477888888888776654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=6.6e-11 Score=130.67 Aligned_cols=99 Identities=21% Similarity=0.180 Sum_probs=58.5
Q ss_pred eEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEe
Q 038430 305 VRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDI 384 (677)
Q Consensus 305 l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L 384 (677)
++.|++++|.+..+|. +..+++|+.|++++ +.+..+|..++.+++|++|+|++|.++.+| .++++++|++|+|
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~-----N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSH-----NRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL 515 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCS-----SCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCc-----ccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence 5556666666655554 55666666666653 233355555666666666666666666555 5666666666666
Q ss_pred cCCCCcccc--CcccccccccceeecCcc
Q 038430 385 RGCRNLREL--PTGIGKLKNMRSLLNGLT 411 (677)
Q Consensus 385 ~~~~~l~~l--p~~i~~l~~L~~L~l~~~ 411 (677)
++|. +..+ |..++.|++|+.|++++|
T Consensus 516 s~N~-l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 516 CNNR-LQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp CSSC-CCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCCC-CCCCCCcHHHhcCCCCCEEEecCC
Confidence 6665 4444 555666666666666666
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-10 Score=108.31 Aligned_cols=132 Identities=18% Similarity=0.196 Sum_probs=97.6
Q ss_pred cccCCCcccEEEeCCCCCCCCCCccCCcccCCCC-CcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCccc-c
Q 038430 321 SIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLM-HLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGI-G 398 (677)
Q Consensus 321 ~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~-~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i-~ 398 (677)
.+..+++|+.|++++| .+..+|. +..+. +|++|++++|.++.+ +.++.+++|++|++++|. +..+|..+ +
T Consensus 14 ~~~~~~~L~~L~l~~n-----~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~ 85 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGY-----KIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQ 85 (176)
T ss_dssp EEECTTSCEEEECTTS-----CCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHH
T ss_pred hcCCcCCceEEEeeCC-----CCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhh
Confidence 4667889999999963 4445654 54555 999999999999987 678999999999999998 77888655 8
Q ss_pred cccccceeecCccCCCcccCC--cCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 399 KLKNMRSLLNGLTCSLKYMPI--GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 399 ~l~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
.+++|++|++++| .+..+|. .++.+++|+.|++.++.....+ ......+..+++|+.|+++.
T Consensus 86 ~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~--~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 86 ALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKK--HYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp HCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGST--THHHHHHHHCTTCSEETTEE
T ss_pred cCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcH--hHHHHHHHHCCccceeCCCc
Confidence 9999999999999 4677776 6888888888888777654210 00011245555566655554
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.2e-10 Score=113.70 Aligned_cols=264 Identities=11% Similarity=0.055 Sum_probs=153.3
Q ss_pred CCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccch-hhcc--------CCCcCEEEecCCCCccccCc
Q 038430 325 LNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPK-TLCE--------LYNLQKLDIRGCRNLRELPT 395 (677)
Q Consensus 325 l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~--------l~~L~~L~L~~~~~l~~lp~ 395 (677)
+++|++|++++|. +..+...-+.++.++++.+..+ .+|. .|.+ +++|+.|+|.+ . +..++.
T Consensus 48 l~~L~~LdLs~n~-----i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~ 117 (329)
T 3sb4_A 48 FPSLKVLDISNAE-----IKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIED 117 (329)
T ss_dssp CTTCCEEEEEEEE-----ECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECT
T ss_pred hccCeEEecCcce-----eEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-c-ccchhH
Confidence 6678888887532 2211000112222444554444 3333 3666 88999999987 4 777765
Q ss_pred -ccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCC-cccccCccCCCChhHH
Q 038430 396 -GIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIR-KCGIEGLSNVSHLDEA 473 (677)
Q Consensus 396 -~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~-~L~i~~~~~~~~~~~~ 473 (677)
.+..+++|+.|++.+|.....-+..+..+.++..+......... ......-..+.++..|+ .+.+.. ...++..
T Consensus 118 ~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~-~~~~i~~~~f~~~~~L~~~i~~~~---~~~l~~~ 193 (329)
T 3sb4_A 118 AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR-FKNRWEHFAFIEGEPLETTIQVGA---MGKLEDE 193 (329)
T ss_dssp TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH-TSTTTTTSCEEESCCCEEEEEECT---TCCHHHH
T ss_pred HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh-ccccccccccccccccceeEEecC---CCcHHHH
Confidence 47888999999998884333333446666555555433210000 00001111222333333 122222 2233333
Q ss_pred HHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCC
Q 038430 474 ERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQP 553 (677)
Q Consensus 474 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (677)
....-....++..+.+.+. -......... ..
T Consensus 194 ~~~~~~~~~~~~~l~~~~~-----------------------------------------------l~~~~~~~l~--~~ 224 (329)
T 3sb4_A 194 IMKAGLQPRDINFLTIEGK-----------------------------------------------LDNADFKLIR--DY 224 (329)
T ss_dssp HHHTTCCGGGCSEEEEEEC-----------------------------------------------CCHHHHHHHH--HH
T ss_pred HhhcccCccccceEEEeee-----------------------------------------------ecHHHHHHHH--Hh
Confidence 3333334566777777654 0001111111 12
Q ss_pred CCCCcEEEEecCCCCCCChh-HhhccCCCeEEEeCCCCCCcCCC--CCCcc-cc-eeeccccccceEeCCccccCCCCCC
Q 038430 554 PLNVEKLWILFNGGNILPKW-LTSLTNLSDLKLVFCENCEQLPP--LGKLP-LE-KLELCHLKSVKRVGNEFLEIEESED 628 (677)
Q Consensus 554 ~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~-~L~l~~~~~l~~i~~~~~~~~~~~~ 628 (677)
+++|+.|+|.+|.+..+|.. +..+++|+.|++.++ ++.++. +.+++ |+ .|.+.+ +++.|+...+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF------- 293 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAF------- 293 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTT-------
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhh-------
Confidence 68999999999998888876 568999999999986 777775 88899 99 999986 7899976655
Q ss_pred CCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCccccc
Q 038430 629 DPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLR 676 (677)
Q Consensus 629 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~ 676 (677)
..+++|++|.+....-+.+.. ..+..+++|++|+
T Consensus 294 -----------~~c~~L~~l~l~~n~i~~I~~---~aF~~~~~L~~ly 327 (329)
T 3sb4_A 294 -----------MGCDNLRYVLATGDKITTLGD---ELFGNGVPSKLIY 327 (329)
T ss_dssp -----------TTCTTEEEEEECSSCCCEECT---TTTCTTCCCCEEE
T ss_pred -----------hCCccCCEEEeCCCccCccch---hhhcCCcchhhhc
Confidence 678999999986543233332 3334688888875
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.06 E-value=5e-10 Score=105.53 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=92.7
Q ss_pred cEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchh--hccCCCcCEEEecCCCCccccCccccccccccee
Q 038430 329 RTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKT--LCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSL 406 (677)
Q Consensus 329 ~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~--i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 406 (677)
+++++++ +.+..+|..+.. +|++|++++|.++.+|+. ++.+++|++|+|++|......|..+..+++|++|
T Consensus 11 ~~l~~s~-----~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTG-----RGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTT-----SCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCC-----CCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 6788874 566788876653 899999999999988764 8999999999999998434447789999999999
Q ss_pred ecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 407 LNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 407 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
++++|......|..++.+++|++|++.++.... .....+..+++|+.|.+.+
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISC-----VMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE-----ECTTSSTTCTTCCEEECTT
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCe-----eCHHHhhcCCCCCEEEeCC
Confidence 999996444445558899999999988876652 2233444555555555544
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-12 Score=123.89 Aligned_cols=137 Identities=20% Similarity=0.196 Sum_probs=62.5
Q ss_pred ccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCC
Q 038430 344 DKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISK 423 (677)
Q Consensus 344 ~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~ 423 (677)
..+|..++.+++|++|++++|.++.+| .+.++++|++|++++|. +..+|..+..+++|++|++++| .+..+| .++.
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~ 113 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASLS-GIEK 113 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHH
T ss_pred hhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC-cCCcCC-cccc
Confidence 333334444555555555555554444 44455555555555544 4444444444455555555554 233333 3444
Q ss_pred CCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCC------CChhHHHHhhccCCcccCceE
Q 038430 424 LTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNV------SHLDEAERLELKNMENLLHLY 488 (677)
Q Consensus 424 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~------~~~~~~~~~~l~~~~~L~~L~ 488 (677)
+++|+.|++.++.... ...+..+..+++|+.|.+.+..-. ..........+..+++|+.|+
T Consensus 114 l~~L~~L~l~~N~i~~----~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITN----WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEEECCC----HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCCCcCCc----hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 4455555554444331 111234445555555555542100 000122223356677777765
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=9.7e-10 Score=103.58 Aligned_cols=121 Identities=18% Similarity=0.291 Sum_probs=94.4
Q ss_pred cEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccC-cccccccccceee
Q 038430 329 RTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELP-TGIGKLKNMRSLL 407 (677)
Q Consensus 329 ~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~ 407 (677)
++++++ ++.+..+|..+. .+|++|++++|.++.+|..+.++++|++|++++|. +..++ ..+..+++|++|+
T Consensus 13 ~~l~~~-----~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCS-----NKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp TEEECT-----TSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CEEEcC-----CCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEE
Confidence 567777 456778887654 68999999999999999999999999999999998 66665 4699999999999
Q ss_pred cCccCCCcccC-CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 408 NGLTCSLKYMP-IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 408 l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
+++|. +..+| ..++.+++|++|++.++.... .....+..+.+|+.|.+.+
T Consensus 85 Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 85 LSYNR-LRCIPPRTFDGLKSLRLLSLHGNDISV-----VPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CCSSC-CCBCCTTTTTTCTTCCEEECCSSCCCB-----CCTTTTTTCTTCCEEECCS
T ss_pred CCCCc-cCEeCHHHhCCCCCCCEEECCCCCCCe-----eChhhhhcCccccEEEeCC
Confidence 99995 44554 568999999999998877653 2223345555566665554
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.4e-09 Score=99.35 Aligned_cols=124 Identities=28% Similarity=0.395 Sum_probs=94.7
Q ss_pred EEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccchh-hccCCCcCEEE
Q 038430 306 RHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLPKT-LCELYNLQKLD 383 (677)
Q Consensus 306 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~ 383 (677)
+.+++.++++..+|..+ .++|+.|++++ +.+..+|. .++.+++|++|++++|.++.+|+. +..+++|++|+
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~-----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELES-----NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCS-----SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCC-----CcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 46777778888887544 36899999986 33445554 468889999999999999887765 68899999999
Q ss_pred ecCCCCccccCcc-cccccccceeecCccCCCcccCCc-CCCCCCCCccCceeeCCC
Q 038430 384 IRGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 384 L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~ 438 (677)
+++|. +..+|.. +..+++|++|++++| .+..+|.. +..+++|++|++.++...
T Consensus 83 l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 83 LHENK-LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCC-ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 99988 6666654 688999999999998 45566655 577888888888766543
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.96 E-value=6.2e-12 Score=119.43 Aligned_cols=148 Identities=20% Similarity=0.198 Sum_probs=111.7
Q ss_pred ceEEEEEEec--CCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 304 KVRHLGLKFK--GGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 304 ~l~~L~l~~~--~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
.++...+.+. .+..+|..+..+++|++|++++ +.+..+| .+..+++|++|++++|.++.+|..+..+++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~-----n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALST-----NNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEE 97 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSE-----EEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCC-----CCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCE
Confidence 3444555443 5666777889999999999985 3455577 788899999999999999999988888899999
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCC--cCCCCCCCCccCceeeCCCcCCC-----CcccccccccCC
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPI--GISKLTSLRTLDKFAVGGGVDGG-----STCRLECLKNFQ 454 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~L~~l~ 454 (677)
|++++|. +..+| .++.+++|++|++++|. +..+|. .+..+++|++|++.++....... .......+..++
T Consensus 98 L~L~~N~-l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 98 LWISYNQ-IASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp EEEEEEE-CCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred EECcCCc-CCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence 9999997 77787 58999999999999994 555543 68889999999998776532000 001112366777
Q ss_pred cCCccc
Q 038430 455 LIRKCG 460 (677)
Q Consensus 455 ~L~~L~ 460 (677)
+|+.|+
T Consensus 175 ~L~~Ld 180 (198)
T 1ds9_A 175 NLKKLD 180 (198)
T ss_dssp SCSEEC
T ss_pred CcEEEC
Confidence 777765
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.7e-09 Score=98.65 Aligned_cols=99 Identities=20% Similarity=0.339 Sum_probs=66.0
Q ss_pred EEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchh-hccCCCcCEEE
Q 038430 306 RHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKT-LCELYNLQKLD 383 (677)
Q Consensus 306 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~ 383 (677)
+.++++++.+..+|..+. ++|++|++++ +.+..+ |..++.+++|++|+|++|.++.+|+. +.++++|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~-----N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNN-----NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCC-----CCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence 356667777777775443 6777777774 333444 44567777777777777777777665 46777777777
Q ss_pred ecCCCCccccCcc-cccccccceeecCccC
Q 038430 384 IRGCRNLRELPTG-IGKLKNMRSLLNGLTC 412 (677)
Q Consensus 384 L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 412 (677)
|++|. +..+|.. +..+++|++|++++|.
T Consensus 88 L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 88 LNDNH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCCCc-cceeCHHHhccccCCCEEEeCCCC
Confidence 77776 6666654 6677777777777773
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.4e-09 Score=96.94 Aligned_cols=108 Identities=21% Similarity=0.360 Sum_probs=91.7
Q ss_pred CCCceEEEEEEecCCCcccc-cccCCCcccEEEeCCCCCCCCCCccCCcc-cCCCCCcCEEEecCccccccchh-hccCC
Q 038430 301 FGGKVRHLGLKFKGGASFPM-SIHGLNRLRTLLIDDESPPNSSLDKIPEN-VGKLMHLKYLNLSELHIERLPKT-LCELY 377 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~ 377 (677)
.+..++.|++.++.+..+|. .+..+++|++|++++ +.+..+|.. ++.+++|++|++++|.++.+|+. +..++
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 100 (177)
T 2o6r_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ-----NQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLT 100 (177)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCC-----CcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCc
Confidence 46789999999999988874 578899999999996 345566654 68999999999999999988775 78999
Q ss_pred CcCEEEecCCCCccccCcc-cccccccceeecCccCCC
Q 038430 378 NLQKLDIRGCRNLRELPTG-IGKLKNMRSLLNGLTCSL 414 (677)
Q Consensus 378 ~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~ 414 (677)
+|++|++++|. +..+|.. +..+++|++|++++|...
T Consensus 101 ~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 101 QLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 99999999998 7778775 578999999999999543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.86 E-value=6.2e-09 Score=95.82 Aligned_cols=97 Identities=23% Similarity=0.349 Sum_probs=53.1
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchh-hccCCCcCEEEe
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKT-LCELYNLQKLDI 384 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~L 384 (677)
.++++++.+..+|..+. ++|++|++++ +.+..+ |..+..+++|++|+|++|.++.+|+. +.++++|++|+|
T Consensus 13 ~l~~s~n~l~~ip~~~~--~~l~~L~L~~-----N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 13 TVDCSGKSLASVPTGIP--TTTQVLYLYD-----NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCS-----SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EEEeCCCCcCccCccCC--CCCcEEEcCC-----CcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 45555555555554332 5566666653 233333 34455566666666666666655543 455666666666
Q ss_pred cCCCCccccCc-ccccccccceeecCcc
Q 038430 385 RGCRNLRELPT-GIGKLKNMRSLLNGLT 411 (677)
Q Consensus 385 ~~~~~l~~lp~-~i~~l~~L~~L~l~~~ 411 (677)
++|. +..+|. .+..+++|++|++++|
T Consensus 86 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 86 NDNQ-LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCc-cCEeCHHHhcCCCCCCEEEeCCC
Confidence 6655 444444 3555666666666655
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.2e-09 Score=96.19 Aligned_cols=102 Identities=26% Similarity=0.348 Sum_probs=85.5
Q ss_pred ccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccccc-chhhccCCCcCEEEecCCCCccccCcc-cccccccce
Q 038430 328 LRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERL-PKTLCELYNLQKLDIRGCRNLRELPTG-IGKLKNMRS 405 (677)
Q Consensus 328 L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~ 405 (677)
-+.++++ ++.+..+|..+. .+|++|+|++|.++.+ |..+.++++|++|+|++|. +..+|.. +..+++|++
T Consensus 14 ~~~l~~~-----~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 14 QTLVNCQ-----NIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SSEEECC-----SSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CcEEEeC-----CCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhE
Confidence 3678887 456778888765 8999999999999977 5569999999999999998 8888875 589999999
Q ss_pred eecCccCCCcccCCc-CCCCCCCCccCceeeCCC
Q 038430 406 LLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 406 L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~ 438 (677)
|++++| .+..+|.. ++.+++|+.|++.++...
T Consensus 86 L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 86 LDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred EECCCC-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 999999 46677765 889999999998877654
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.82 E-value=8.2e-09 Score=106.18 Aligned_cols=260 Identities=13% Similarity=0.029 Sum_probs=155.1
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcc-cCC--------CCCcCEEEecCccccccch-
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPEN-VGK--------LMHLKYLNLSELHIERLPK- 371 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~~--------l~~L~~L~Ls~~~i~~lp~- 371 (677)
..+++.|++++|.+..+...-..++.++.+.+..+ .+|+. |.+ +.+|+.|+|.. .++.++.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~--------~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~ 118 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN--------FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDA 118 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT--------EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc--------ccCHHHhcccccccccccCCCcEEECCc-cccchhHH
Confidence 56799999999988733222222333455555532 33322 455 89999999999 8888866
Q ss_pred hhccCCCcCEEEecCCCCccccCc-ccccccccceeecCccC---CCccc-CCcCCCCCCCC-ccCceeeCCCcCCCCcc
Q 038430 372 TLCELYNLQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTC---SLKYM-PIGISKLTSLR-TLDKFAVGGGVDGGSTC 445 (677)
Q Consensus 372 ~i~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~---~~~~~-p~~i~~l~~L~-~L~l~~~~~~~~~~~~~ 445 (677)
.|.++++|+.|++.+|. +..++. .+..+.++..+...... ....+ +..+.++..|+ .+.+...+... ..
T Consensus 119 aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~----~~ 193 (329)
T 3sb4_A 119 AFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLE----DE 193 (329)
T ss_dssp TTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHH----HH
T ss_pred HhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHH----HH
Confidence 48999999999999988 555554 57777777776665421 01111 11233334443 11111100000 00
Q ss_pred cccccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCccccc
Q 038430 446 RLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEK 525 (677)
Q Consensus 446 ~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (677)
....--...++..+.+.+. +. ..........+++|+.|++..+....
T Consensus 194 ~~~~~~~~~~~~~l~~~~~--l~--~~~~~~l~~~~~~L~~l~L~~n~i~~----------------------------- 240 (329)
T 3sb4_A 194 IMKAGLQPRDINFLTIEGK--LD--NADFKLIRDYMPNLVSLDISKTNATT----------------------------- 240 (329)
T ss_dssp HHHTTCCGGGCSEEEEEEC--CC--HHHHHHHHHHCTTCCEEECTTBCCCE-----------------------------
T ss_pred HhhcccCccccceEEEeee--ec--HHHHHHHHHhcCCCeEEECCCCCcce-----------------------------
Confidence 0001111233344444331 11 11111112347899999998652111
Q ss_pred CCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChh-HhhccCCC-eEEEeCCCCCCcCCC--CCCcc
Q 038430 526 GGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKW-LTSLTNLS-DLKLVFCENCEQLPP--LGKLP 601 (677)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~-~L~l~~c~~~~~l~~--l~~l~ 601 (677)
.....+..+++|+++++..+ +..++.. +..+++|+ .|.+.+ .++.++. +.+++
T Consensus 241 --------------------I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~ 297 (329)
T 3sb4_A 241 --------------------IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCD 297 (329)
T ss_dssp --------------------ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCT
T ss_pred --------------------ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCc
Confidence 01134677889999999887 6666654 66999999 999987 6666664 88899
Q ss_pred -cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeee
Q 038430 602 -LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEI 650 (677)
Q Consensus 602 -L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 650 (677)
|+.|++.+ ++++.|+...+ ..+++|+.+..
T Consensus 298 ~L~~l~l~~-n~i~~I~~~aF------------------~~~~~L~~ly~ 328 (329)
T 3sb4_A 298 NLRYVLATG-DKITTLGDELF------------------GNGVPSKLIYK 328 (329)
T ss_dssp TEEEEEECS-SCCCEECTTTT------------------CTTCCCCEEEC
T ss_pred cCCEEEeCC-CccCccchhhh------------------cCCcchhhhcc
Confidence 99999975 77999987655 56788888763
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-08 Score=93.74 Aligned_cols=103 Identities=25% Similarity=0.312 Sum_probs=85.4
Q ss_pred cccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccccc-chhhccCCCcCEEEecCCCCccccCcc-cccccccc
Q 038430 327 RLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERL-PKTLCELYNLQKLDIRGCRNLRELPTG-IGKLKNMR 404 (677)
Q Consensus 327 ~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~ 404 (677)
..+.++++ ++.+..+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+|.. +..+++|+
T Consensus 10 ~~~~l~~s-----~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCS-----GKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLT 81 (170)
T ss_dssp ETTEEECT-----TSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CCCEEEeC-----CCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCC
Confidence 35788888 456777887664 8999999999999987 5569999999999999998 7777765 68999999
Q ss_pred eeecCccCCCcccCC-cCCCCCCCCccCceeeCCC
Q 038430 405 SLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 405 ~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~ 438 (677)
+|++++|. +..+|. .+..+++|++|++.++...
T Consensus 82 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 82 QLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 99999994 666665 4889999999998877653
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.55 E-value=9.6e-08 Score=98.90 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=64.2
Q ss_pred EEEEec-CCCcccccccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccch-hhccCCCcCEEEe
Q 038430 308 LGLKFK-GGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDI 384 (677)
Q Consensus 308 L~l~~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L 384 (677)
+++.++ .+..+|. +..+++|+.|+|++ ++.+..+| ..|+.+.+|++|+|++|.|+.+|+ .|.+|++|+.|+|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~----~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIEN----QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCS----CSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccC----CCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 455555 6666776 77777777777763 24555555 346777777777777777775544 4677777777777
Q ss_pred cCCCCccccCcccccccccceeecCccC
Q 038430 385 RGCRNLRELPTGIGKLKNMRSLLNGLTC 412 (677)
Q Consensus 385 ~~~~~l~~lp~~i~~l~~L~~L~l~~~~ 412 (677)
++|. +..+|..+.....|+.|++.+|.
T Consensus 88 ~~N~-l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 88 SFNA-LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSSC-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCCc-cceeCHHHcccCCceEEEeeCCC
Confidence 7776 66666544333337777777763
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-07 Score=96.51 Aligned_cols=103 Identities=18% Similarity=0.135 Sum_probs=82.3
Q ss_pred EEEeCCCCCCCCCCccCCcccCCCCCcCEEEecC-ccccccch-hhccCCCcCEEEecCCCCccccC-ccccccccccee
Q 038430 330 TLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSE-LHIERLPK-TLCELYNLQKLDIRGCRNLRELP-TGIGKLKNMRSL 406 (677)
Q Consensus 330 ~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~-~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L 406 (677)
.++.++ .+.+..+|. ++.+.+|++|+|++ |.++.+|+ .|++|++|++|+|++|. +..+| ..+++|++|++|
T Consensus 12 ~v~~~~----~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 12 GLRCTR----DGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp CEECCS----SCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEE
T ss_pred EEEcCC----CCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEE
Confidence 346653 336788999 99999999999996 99998874 69999999999999998 66555 468999999999
Q ss_pred ecCccCCCcccCCcCCCCCCCCccCceeeCCCc
Q 038430 407 LNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGV 439 (677)
Q Consensus 407 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~ 439 (677)
+|++| .+..+|..+.....|+.|++.++....
T Consensus 86 ~l~~N-~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 86 NLSFN-ALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp ECCSS-CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred eCCCC-ccceeCHHHcccCCceEEEeeCCCccC
Confidence 99999 566777664443349999988877654
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-06 Score=91.74 Aligned_cols=102 Identities=18% Similarity=0.287 Sum_probs=58.4
Q ss_pred ccccCCCcccEEEeCCCCCCCCCCccCCcc-cCCCCCcCEEEecCccccccc-hhhccCCCcCEEEecCCCCccccCccc
Q 038430 320 MSIHGLNRLRTLLIDDESPPNSSLDKIPEN-VGKLMHLKYLNLSELHIERLP-KTLCELYNLQKLDIRGCRNLRELPTGI 397 (677)
Q Consensus 320 ~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~~l~~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i 397 (677)
.+|.++ +|+.+.+.. .+..++.. |.+ .+|+.+.+.. .++.++ ..|.++.+|+.+++.+|. +..+|...
T Consensus 130 ~aF~~~-~L~~i~l~~------~i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~a 199 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNE------GLKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPAST 199 (401)
T ss_dssp TTTTTC-CCSEEECCT------TCCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTT
T ss_pred hhcccC-CccEEEeCC------CccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhh
Confidence 345554 577776643 24444433 344 3577777764 455554 346677777777777665 66666654
Q ss_pred ccccccceeecCccCCCcccC-CcCCCCCCCCccCce
Q 038430 398 GKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKF 433 (677)
Q Consensus 398 ~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~ 433 (677)
-...+|+.+.+..+ +..++ ..+.++.+|+.+.+.
T Consensus 200 F~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 200 FVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECC
T ss_pred EeecccCEEEeCCc--hheehhhHhhCCCCCCEEecC
Confidence 44567777777643 44444 335666666666543
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.7e-06 Score=91.02 Aligned_cols=234 Identities=12% Similarity=0.070 Sum_probs=147.5
Q ss_pred ceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 304 KVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 304 ~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
+++.+.+..+ +..++ .+|.++ +|+.+.+.. .+..++ ..|.++.+|+.+++..|.++.+|...-...+|+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~------~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~ 207 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS------TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEE 207 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT------TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSE
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC------CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCE
Confidence 5666666544 55555 466664 699998863 455565 4478999999999999999988876444689999
Q ss_pred EEecCCCCccccCc-ccccccccceeecCccCCCcccCCc-CCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcc
Q 038430 382 LDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKC 459 (677)
Q Consensus 382 L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L 459 (677)
+.+..+ +..++. .+.++++|+.+.+..+ +..++.. +.+ .+|+.+.+.+ ... .-....+.++.+|+.+
T Consensus 208 l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~-~i~-----~I~~~aF~~c~~L~~l 276 (401)
T 4fdw_A 208 VLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN-GVT-----NIASRAFYYCPELAEV 276 (401)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET-TCC-----EECTTTTTTCTTCCEE
T ss_pred EEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC-Ccc-----EEChhHhhCCCCCCEE
Confidence 999853 677765 5888999999999875 4555544 555 6788777632 111 2234456667777777
Q ss_pred cccCccCC-CChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhh
Q 038430 460 GIEGLSNV-SHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERR 538 (677)
Q Consensus 460 ~i~~~~~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (677)
.+.+.... ..........+.+|++|+.+.+..+ ...
T Consensus 277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~------------------------------------------ 313 (401)
T 4fdw_A 277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRI------------------------------------------ 313 (401)
T ss_dssp EEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCE------------------------------------------
T ss_pred EeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEE------------------------------------------
Confidence 66542110 0011122345677788888777522 000
Q ss_pred cchhhHHHHhhhcCCCCCCcEEEEecCCCCCCCh-hHhhccCCCeEEEeCCCCCCcCCC--CCCcc--cceeeccc
Q 038430 539 RKNEKDEQLLEALQPPLNVEKLWILFNGGNILPK-WLTSLTNLSDLKLVFCENCEQLPP--LGKLP--LEKLELCH 609 (677)
Q Consensus 539 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~--L~~L~l~~ 609 (677)
.....+..+++|+.+.|..+ +..++. .+..+ +|+.|++.++ ....++. +..+| ++.|.+-.
T Consensus 314 -------I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 314 -------LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp -------ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred -------EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence 01134566788888888554 444433 35567 8999999887 3333332 44554 66666653
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.9e-05 Score=82.16 Aligned_cols=235 Identities=8% Similarity=-0.029 Sum_probs=135.5
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHcC--CccEEEEEECCcCCC------ccchhhhhhhhcC
Q 038430 2 WVCVSDTFEEISVANAIIEGLGESTSS-LSEFQSLMSHIHRSIE--GKKNFLILNDVWDGD------YNKWAPFFLCLNH 72 (677)
Q Consensus 2 WV~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~~i~~~L~--~kr~LlVlDdvw~~~------~~~~~~l~~~~~~ 72 (677)
||++....+...++++++++++..... ..+.......+.+.+. +++++||+||+|... ...+..+...+..
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~ 170 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEE 170 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHh
Confidence 556557788999999999999765332 2344556666666665 679999999997632 1223333333322
Q ss_pred C---C--CCcEEEEEcCchHHHHhcC---------CCCeEecCCCChHHHHHHHHHHh---hcCCCCCCCcchhHHHHHH
Q 038430 73 G---L--HGSKILVTTRNELVARMMG---------STNIIFIEQLTEEECWSLFKRLA---FFGCSFEDCERLEPIGQKI 135 (677)
Q Consensus 73 ~---~--~gS~IiiTTR~~~v~~~~~---------~~~~~~v~~L~~~ea~~LF~~~a---f~~~~~~~~~~~~~~~~~i 135 (677)
. + ....||+|||...+...+. ....+++++++.++++++|...+ +.... --.+....+
T Consensus 171 ~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~-----~~~~~~~~i 245 (412)
T 1w5s_A 171 IPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV-----WEPRHLELI 245 (412)
T ss_dssp SCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS-----CCHHHHHHH
T ss_pred cccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC-----CChHHHHHH
Confidence 1 2 3445888888665432211 12239999999999999997653 32111 123567788
Q ss_pred HHHhc------CCchHHHHHHHHh-c-----cC--CCHHHHHHHHhhhhhhhhhcCCCccceeecccccCCCchhhhHHH
Q 038430 136 ARKCK------GLPIAAKVIGNLL-R-----SK--STIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFF 201 (677)
Q Consensus 136 ~~~c~------GlPLal~~ig~~L-~-----~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~f 201 (677)
++.|+ |.|..+..+.... . +. -+...+..++.... . ...+.-+++.|+. ..+.++
T Consensus 246 ~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~-------~--~~~~~~~l~~l~~--~~~~~l 314 (412)
T 1w5s_A 246 SDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE-------A--ASIQTHELEALSI--HELIIL 314 (412)
T ss_dssp HHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCH--HHHHHH
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-------c--cchHHHHHHcCCH--HHHHHH
Confidence 88898 9997665544321 1 11 12344444433210 0 2334556778888 778888
Q ss_pred hhhccCC--CCceecHHHHHHHHH--H---cCCcCcchhhhHHHhHHHHHHHHHHccCccccc
Q 038430 202 SYCAVFP--KDYNMYKEELISLWM--A---QGYLNAEEYEEKEMTGEECFNILAARSFFQEFE 257 (677)
Q Consensus 202 l~~a~fp--~~~~i~~~~li~~wi--~---~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 257 (677)
..++.+. .+..+...++...+. + .|. ... .......+++.|.+.+++....
T Consensus 315 ~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 315 RLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KPR----GYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CCC----CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CCC----CHHHHHHHHHHHHhCCCEEeec
Confidence 8777643 223344544444332 1 121 110 1123456789999999997654
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-07 Score=98.80 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=15.1
Q ss_pred CCcCEEEecCccccc--cchhhccCCCcCEEEecCCC
Q 038430 354 MHLKYLNLSELHIER--LPKTLCELYNLQKLDIRGCR 388 (677)
Q Consensus 354 ~~L~~L~Ls~~~i~~--lp~~i~~l~~L~~L~L~~~~ 388 (677)
.+|+.|+|++|.++. +..-...+.+|+.|+|++|.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~ 137 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS 137 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC
Confidence 455555555555441 11112223345555555554
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=8e-08 Score=100.19 Aligned_cols=132 Identities=15% Similarity=0.139 Sum_probs=88.7
Q ss_pred CCceEEEEEEecCCCcc-----ccccc-CCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccccc-----c
Q 038430 302 GGKVRHLGLKFKGGASF-----PMSIH-GLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERL-----P 370 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~-----p~~~~-~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~l-----p 370 (677)
...++.|++++|.+... ...+. ..++|+.|++++|.+.......+ ...+.+|++|+|++|.++.. .
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l---~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL---LPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT---HHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH---HHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 56788999999988542 22233 33799999999743221111111 23456899999999998732 2
Q ss_pred hhh-ccCCCcCEEEecCCCCccc-----cCcccccccccceeecCccCCCcc-----cCCcCCCCCCCCccCceeeCCC
Q 038430 371 KTL-CELYNLQKLDIRGCRNLRE-----LPTGIGKLKNMRSLLNGLTCSLKY-----MPIGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 371 ~~i-~~l~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~-----~p~~i~~l~~L~~L~l~~~~~~ 438 (677)
..+ ...++|++|+|++|. +.. ++..+..+++|++|++++|. ++. ++..+...++|++|++.+|...
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 222 356889999999998 543 55556788999999999995 332 2344556667777777766543
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.02 E-value=3.2e-06 Score=87.38 Aligned_cols=83 Identities=25% Similarity=0.262 Sum_probs=43.6
Q ss_pred CcccEEEeCCCCCCCCC----CccCCcccCCCCCcCEEEecCcccc----------ccchhhccCCCcCEEEecCCCCcc
Q 038430 326 NRLRTLLIDDESPPNSS----LDKIPENVGKLMHLKYLNLSELHIE----------RLPKTLCELYNLQKLDIRGCRNLR 391 (677)
Q Consensus 326 ~~L~~L~l~~~~l~~~~----~~~lp~~~~~l~~L~~L~Ls~~~i~----------~lp~~i~~l~~L~~L~L~~~~~l~ 391 (677)
..++.|.+..+.+.+.. +..+.+++..+++|+.|.+...... .++..+..+++|+.|+|++|..+
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 45778888753211100 0112333455677888877543221 24444566677777777766322
Q ss_pred ccCcccccccccceeecCcc
Q 038430 392 ELPTGIGKLKNMRSLLNGLT 411 (677)
Q Consensus 392 ~lp~~i~~l~~L~~L~l~~~ 411 (677)
.+|. +. +++|++|++..|
T Consensus 186 ~l~~-~~-~~~L~~L~L~~~ 203 (362)
T 2ra8_A 186 SIGK-KP-RPNLKSLEIISG 203 (362)
T ss_dssp BCCS-CB-CTTCSEEEEECS
T ss_pred eecc-cc-CCCCcEEEEecC
Confidence 3333 32 566666666655
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.8e-06 Score=87.75 Aligned_cols=167 Identities=10% Similarity=0.040 Sum_probs=86.9
Q ss_pred cccCCCcccEEEeCCCCCCCCCC-----ccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCc
Q 038430 321 SIHGLNRLRTLLIDDESPPNSSL-----DKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPT 395 (677)
Q Consensus 321 ~~~~l~~L~~L~l~~~~l~~~~~-----~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 395 (677)
+...+++|+.|.+.+.......+ ..++..+..+++|+.|+|+++.-..+|+ +. +++|++|+|..|........
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHH
Confidence 44556778888776421111001 1233334567788888887764223443 33 77888888877652221112
Q ss_pred ccc--cccccceeecCccCC-------CcccCCcC--CCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCc
Q 038430 396 GIG--KLKNMRSLLNGLTCS-------LKYMPIGI--SKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGL 464 (677)
Q Consensus 396 ~i~--~l~~L~~L~l~~~~~-------~~~~p~~i--~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~ 464 (677)
.+. .+++|++|+++.+.. +..+...+ ..+++|+.|++.++...... ...+.....+++|+.|+++..
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~--~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV--VEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH--HHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH--HHHHHhCccCCCCCEEECCCC
Confidence 232 677888887753110 11111112 24677888887766543200 011222235677888888652
Q ss_pred cCCCCh-hHHHHhhccCCcccCceEEEee
Q 038430 465 SNVSHL-DEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 465 ~~~~~~-~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
. +... .......+..+++|+.|+++.|
T Consensus 290 ~-L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 290 V-LTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp C-CBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred C-CChHHHHHHHhhcccCCcceEEECCCC
Confidence 1 1111 1123334456788888888877
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00019 Score=75.40 Aligned_cols=293 Identities=13% Similarity=0.125 Sum_probs=156.2
Q ss_pred CceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCc------------c---
Q 038430 303 GKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSEL------------H--- 365 (677)
Q Consensus 303 ~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~------------~--- 365 (677)
.+++.+.+. +.+..++ .+|.+|++|+.+.+..+ +..++. .+.++..|+.+.+..+ .
T Consensus 71 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~------l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 71 RKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS------VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT------CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred CCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC------ceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence 468888886 3455664 67888999999988642 223322 2344444443333211 1
Q ss_pred ------cccc-chhhccCCCcCEEEecCCCCccccCc-ccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeC
Q 038430 366 ------IERL-PKTLCELYNLQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVG 436 (677)
Q Consensus 366 ------i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~ 436 (677)
+..+ ...|.++.+|+.+.+.++ +..++. .+..+.+|+.+.+..+ +..++ ..+.++..|+.+.+....
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred cccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCc
Confidence 1112 234778899999999754 445554 5778899999998766 34444 446777788877654322
Q ss_pred CCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCC
Q 038430 437 GGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDED 516 (677)
Q Consensus 437 ~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (677)
... -........|+.+.+... +. ......+.++..|+.+.+..+.. . .+...-.
T Consensus 220 ~~i-------~~~~~~~~~l~~i~ip~~--~~---~i~~~~f~~~~~l~~~~~~~~~~-~-------------i~~~~F~ 273 (394)
T 4fs7_A 220 YYL-------GDFALSKTGVKNIIIPDS--FT---ELGKSVFYGCTDLESISIQNNKL-R-------------IGGSLFY 273 (394)
T ss_dssp CEE-------CTTTTTTCCCCEEEECTT--CC---EECSSTTTTCSSCCEEEECCTTC-E-------------ECSCTTT
T ss_pred eEe-------ehhhcccCCCceEEECCC--ce---ecccccccccccceeEEcCCCcc-e-------------eeccccc
Confidence 110 001111223444333210 01 11112345566677666643300 0 0000000
Q ss_pred CCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChh-HhhccCCCeEEEeCCCCCCcCC
Q 038430 517 EDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKW-LTSLTNLSDLKLVFCENCEQLP 595 (677)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~~~~l~ 595 (677)
............. ...-..+..+.+|+.+.+..+ +..++.. +..+.+|+.++|.+ .++.++
T Consensus 274 ~~~~l~~~~~~~~---------------~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~ 335 (394)
T 4fs7_A 274 NCSGLKKVIYGSV---------------IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIG 335 (394)
T ss_dssp TCTTCCEEEECSS---------------EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEEC
T ss_pred cccccceeccCce---------------eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC--cccEEh
Confidence 0000000000000 000123455678888888654 3445433 55788999999964 355555
Q ss_pred C--CCCcc-cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCc
Q 038430 596 P--LGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRL 672 (677)
Q Consensus 596 ~--l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L 672 (677)
. +.+.. |+.+.+.. +++.|+...+ ..+++|+++.+...- +.+. ..+..+++|
T Consensus 336 ~~aF~~c~~L~~i~lp~--~l~~I~~~aF------------------~~C~~L~~i~lp~~~-~~~~----~~F~~c~~L 390 (394)
T 4fs7_A 336 KRSFRGCTSLSNINFPL--SLRKIGANAF------------------QGCINLKKVELPKRL-EQYR----YDFEDTTKF 390 (394)
T ss_dssp TTTTTTCTTCCEECCCT--TCCEECTTTB------------------TTCTTCCEEEEEGGG-GGGG----GGBCTTCEE
T ss_pred HHhccCCCCCCEEEECc--cccEehHHHh------------------hCCCCCCEEEECCCC-EEhh----heecCCCCC
Confidence 3 67778 99998863 4888876654 568899999885432 2221 123357777
Q ss_pred ccc
Q 038430 673 SSL 675 (677)
Q Consensus 673 ~~L 675 (677)
+.+
T Consensus 391 ~~I 393 (394)
T 4fs7_A 391 KWI 393 (394)
T ss_dssp EEE
T ss_pred cEE
Confidence 754
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.87 E-value=1.5e-06 Score=79.03 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=71.4
Q ss_pred CCCcEEEEecCCCCCC-ChhHhhccCCCeEEEeCCCCCCc--CCCCCCc----c-cceeeccccccceEeCCccccCCCC
Q 038430 555 LNVEKLWILFNGGNIL-PKWLTSLTNLSDLKLVFCENCEQ--LPPLGKL----P-LEKLELCHLKSVKRVGNEFLEIEES 626 (677)
Q Consensus 555 ~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~~~~--l~~l~~l----~-L~~L~l~~~~~l~~i~~~~~~~~~~ 626 (677)
..|++|+++++.+... -..+..+++|++|+|++|..+++ +..+..+ + |+.|+|++|++++.-+-...
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L----- 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL----- 135 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-----
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-----
Confidence 4799999999985421 12356899999999999987754 3334453 6 99999999999887655443
Q ss_pred CCCCCCCCCCCcccCCCccceeeeccccc-CccccccCCccccCCCcc
Q 038430 627 EDDPSSSSSSSSVTAFPKVKSLEIKELEE-GNYRITRKENISIIPRLS 673 (677)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~p~L~ 673 (677)
..+++|++|++++|+. .........-...+|+++
T Consensus 136 -------------~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 136 -------------HHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp -------------GGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred -------------hcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 5689999999999997 543211001112677765
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00025 Score=74.38 Aligned_cols=103 Identities=12% Similarity=0.200 Sum_probs=65.5
Q ss_pred ccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccch-hhccCCCcCEEEecCCCCccccC---
Q 038430 320 MSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELP--- 394 (677)
Q Consensus 320 ~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp--- 394 (677)
.+|.+|.+|+.+.+.. .+..+++ .|.++.+|+.+++..+ ++.++. .+.++.+|+.+.+..+ +..+.
T Consensus 65 ~AF~~c~~L~~i~lp~------~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~a 135 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS------TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEA 135 (394)
T ss_dssp TTTTTCTTEEEEECCT------TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTT
T ss_pred HHhhCCCCceEEEeCC------CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeeccee
Confidence 5788999999999963 3566654 4788999999999754 665544 4777888877766532 22111
Q ss_pred --------------------cccccccccceeecCccCCCcccC-CcCCCCCCCCccCce
Q 038430 395 --------------------TGIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKF 433 (677)
Q Consensus 395 --------------------~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~ 433 (677)
..+.++++|+.+.+..+ +..++ ..+..+.+|+.+.+.
T Consensus 136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLP 193 (394)
T ss_dssp TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCC
T ss_pred eecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcC
Confidence 13455666776666544 23333 335566666666553
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00014 Score=74.79 Aligned_cols=216 Identities=13% Similarity=0.077 Sum_probs=119.0
Q ss_pred chHHHHHHHHHHHcCC-ccEEEEEECCcCCCc-------cchhhhhhhhcCCCCCcEEEEEcCchHHHHhc---------
Q 038430 30 SEFQSLMSHIHRSIEG-KKNFLILNDVWDGDY-------NKWAPFFLCLNHGLHGSKILVTTRNELVARMM--------- 92 (677)
Q Consensus 30 ~~~~~~~~~i~~~L~~-kr~LlVlDdvw~~~~-------~~~~~l~~~~~~~~~gS~IiiTTR~~~v~~~~--------- 92 (677)
.+..+....+.+..+. ++++||+||++.... ..+..+....... .+.++|+|++...+...+
T Consensus 111 ~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~ 189 (350)
T 2qen_A 111 LSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESP 189 (350)
T ss_dssp CCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTST
T ss_pred chHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCc
Confidence 3455666666665543 389999999976421 1223333333222 467899999876543221
Q ss_pred --CC-CCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHHhccCCCHHHH-HHHHhh
Q 038430 93 --GS-TNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDW-QRILDS 168 (677)
Q Consensus 93 --~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~~~~~~w-~~~l~~ 168 (677)
+. ...+++.+|+.+|+.+++.... ...... .-.+.+.++...|+|.|+++..++..+....+...+ ....+.
T Consensus 190 l~~~~~~~i~l~pl~~~e~~~~l~~~~-~~~~~~---~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 265 (350)
T 2qen_A 190 LYGRIAGEVLVKPFDKDTSVEFLKRGF-REVNLD---VPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV 265 (350)
T ss_dssp TTTCCCEEEECCCCCHHHHHHHHHHHH-HTTTCC---CCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccCccceeeCCCCCHHHHHHHHHHHH-HHcCCC---CCHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH
Confidence 11 2378999999999999997643 221111 123467889999999999999998765332222222 111111
Q ss_pred hhhhhhhcCCCccceeecccccCCCchhhhHHHhhhccCCCCceecHHHHHHHHHHcCCcCcchhhhHHHhHHHHHHHHH
Q 038430 169 EMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEKEMTGEECFNILA 248 (677)
Q Consensus 169 ~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp~~~~i~~~~li~~wi~~g~i~~~~~~~~~~~~~~~~~~L~ 248 (677)
...... ..+. .+.+ . +. ..+..+..+|. +. .+...+........ - .. .......+++.|.
T Consensus 266 ~~~~~~---~~l~---~l~~-~-~~--~~~~~l~~la~---g~-~~~~~l~~~~~~~~-~-~~----~~~~~~~~l~~L~ 325 (350)
T 2qen_A 266 AKGLIM---GELE---ELRR-R-SP--RYVDILRAIAL---GY-NRWSLIRDYLAVKG-T-KI----PEPRLYALLENLK 325 (350)
T ss_dssp HHHHHH---HHHH---HHHH-H-CH--HHHHHHHHHHT---TC-CSHHHHHHHHHHTT-C-CC----CHHHHHHHHHHHH
T ss_pred HHHHHH---HHHH---HHHh-C-Ch--hHHHHHHHHHh---CC-CCHHHHHHHHHHHh-C-CC----CHHHHHHHHHHHH
Confidence 000000 0010 0111 1 34 67778888876 21 33444443332211 0 00 1123567899999
Q ss_pred HccCccccccCCCCCeeeEEe-ChhHHHHH
Q 038430 249 ARSFFQEFEKNDDDDIMSCKM-HDIVHDFA 277 (677)
Q Consensus 249 ~~sll~~~~~~~~~~~~~~~m-hdli~d~~ 277 (677)
+.+++.... + .+.+ |.+++++.
T Consensus 326 ~~gli~~~~----~---~y~~~~p~~~~~~ 348 (350)
T 2qen_A 326 KMNWIVEED----N---TYKIADPVVATVL 348 (350)
T ss_dssp HTTSEEEET----T---EEEESSHHHHHHH
T ss_pred hCCCEEecC----C---EEEEecHHHHHHH
Confidence 999997542 1 3555 66777654
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.66 E-value=1.3e-05 Score=72.76 Aligned_cols=99 Identities=12% Similarity=0.175 Sum_probs=64.8
Q ss_pred cCCcccCCCCCcCEEEecCcccccc-chhhccCCCcCEEEecCCCCccccC-cccccc----cccceeecCccCCCcccC
Q 038430 345 KIPENVGKLMHLKYLNLSELHIERL-PKTLCELYNLQKLDIRGCRNLRELP-TGIGKL----KNMRSLLNGLTCSLKYMP 418 (677)
Q Consensus 345 ~lp~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~l----~~L~~L~l~~~~~~~~~p 418 (677)
.+|.....-..|+.||+++|.|+.. -..+.++++|++|+|++|..++.-- ..+..+ ++|++|++++|..++
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT--- 128 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT--- 128 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC---
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC---
Confidence 3454333335899999999998732 3457889999999999997564321 124443 468888888885443
Q ss_pred CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChh
Q 038430 419 IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLD 471 (677)
Q Consensus 419 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~ 471 (677)
...+..+..+++|+.|.+++|..+++..
T Consensus 129 -------------------------D~Gl~~L~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 129 -------------------------DKGIIALHHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp -------------------------HHHHHHGGGCTTCCEEEEESCTTCCCHH
T ss_pred -------------------------HHHHHHHhcCCCCCEEECCCCCCCCchH
Confidence 2234445566667777777777666643
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=7.3e-06 Score=76.17 Aligned_cols=90 Identities=12% Similarity=0.092 Sum_probs=52.4
Q ss_pred cccCCCcccEEEeCCC-CCCCCCCccCCcccCCCCCcCEEEecCccccc-----cchhhccCCCcCEEEecCCCCccc--
Q 038430 321 SIHGLNRLRTLLIDDE-SPPNSSLDKIPENVGKLMHLKYLNLSELHIER-----LPKTLCELYNLQKLDIRGCRNLRE-- 392 (677)
Q Consensus 321 ~~~~l~~L~~L~l~~~-~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~-- 392 (677)
.+...+.|++|++++| .+.......+...+...++|++|+|++|.|.. +...+...++|++|+|++|. ++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHH
Confidence 4555667777777753 33222223344445566677777777777652 34445556677777777776 332
Q ss_pred ---cCcccccccccceeec--Ccc
Q 038430 393 ---LPTGIGKLKNMRSLLN--GLT 411 (677)
Q Consensus 393 ---lp~~i~~l~~L~~L~l--~~~ 411 (677)
+...+...++|++|++ ++|
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSS
T ss_pred HHHHHHHHHhCCCceEEEecCCCC
Confidence 3444555666777777 555
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00028 Score=72.74 Aligned_cols=212 Identities=9% Similarity=0.035 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHHcCCccEEEEEECCcCCCc---cchhhhhhhhcCCCCCcEEEEEcCchHHHHhc-----------CC-C
Q 038430 31 EFQSLMSHIHRSIEGKKNFLILNDVWDGDY---NKWAPFFLCLNHGLHGSKILVTTRNELVARMM-----------GS-T 95 (677)
Q Consensus 31 ~~~~~~~~i~~~L~~kr~LlVlDdvw~~~~---~~~~~l~~~~~~~~~gS~IiiTTR~~~v~~~~-----------~~-~ 95 (677)
........+.+.-+ ++++||+||++..+. ..+..+...+.....+.++|+|+|........ +. .
T Consensus 123 ~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~ 201 (357)
T 2fna_A 123 SFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAF 201 (357)
T ss_dssp CHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCC
T ss_pred hHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCcc
Confidence 44555555555433 599999999966321 23333222222222467899999987643321 11 2
Q ss_pred CeEecCCCChHHHHHHHHHHhhc-CCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHHhccCCCHHHHHH-HHhhhhhhh
Q 038430 96 NIIFIEQLTEEECWSLFKRLAFF-GCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQR-ILDSEMWKA 173 (677)
Q Consensus 96 ~~~~v~~L~~~ea~~LF~~~af~-~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~~~~~~w~~-~l~~~~~~~ 173 (677)
..+++.+|+.+|+.+++...+-. +..+ .. ...++..|+|.|+++..++..+....+...|-. ..+......
T Consensus 202 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (357)
T 2fna_A 202 STVELKPFSREEAIEFLRRGFQEADIDF---KD----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLI 274 (357)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTCCC---CC----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCC---Cc----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHH
Confidence 47899999999999999874311 1111 12 178999999999999999987654323333321 111100000
Q ss_pred hhcCCCccceeecccc--cCCCchhhhHHHhhhccCCCCceecHHHHHHHHH-HcCCcCcchhhhHHHhHHHHHHHHHHc
Q 038430 174 EEIGKGLLTPLLLSYN--DLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWM-AQGYLNAEEYEEKEMTGEECFNILAAR 250 (677)
Q Consensus 174 ~~~~~~i~~~l~~Sy~--~L~~~~~~k~~fl~~a~fp~~~~i~~~~li~~wi-~~g~i~~~~~~~~~~~~~~~~~~L~~~ 250 (677)
. ..+. .+.++ .++. ..+..+..+|. +. +...+..... ..|. .. .......+++.|.+.
T Consensus 275 ~---~~l~---~~~~~~~~l~~--~~~~~l~~la~---g~--~~~~l~~~~~~~~g~--~~----~~~~~~~~L~~L~~~ 335 (357)
T 2fna_A 275 L---KEFE---NFLHGREIARK--RYLNIMRTLSK---CG--KWSDVKRALELEEGI--EI----SDSEIYNYLTQLTKH 335 (357)
T ss_dssp H---HHHH---HHHTTCGGGHH--HHHHHHHHHTT---CB--CHHHHHHHHHHHHCS--CC----CHHHHHHHHHHHHHT
T ss_pred H---HHHH---HHhhccccccH--HHHHHHHHHHc---CC--CHHHHHHHHHHhcCC--CC----CHHHHHHHHHHHHhC
Confidence 0 0000 01111 4555 67888888887 22 3344332211 1121 00 112356789999999
Q ss_pred cCccccccCCCCCeeeEEe-ChhHHHH
Q 038430 251 SFFQEFEKNDDDDIMSCKM-HDIVHDF 276 (677)
Q Consensus 251 sll~~~~~~~~~~~~~~~m-hdli~d~ 276 (677)
+++.... + .|.+ |++++++
T Consensus 336 gli~~~~----~---~y~f~~~~~~~~ 355 (357)
T 2fna_A 336 SWIIKEG----E---KYCPSEPLISLA 355 (357)
T ss_dssp TSEEESS----S---CEEESSHHHHHH
T ss_pred CCEEecC----C---EEEecCHHHHHh
Confidence 9987542 1 3554 6777765
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=1.1e-05 Score=75.02 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=82.4
Q ss_pred CCceEEEEEEec-CCCc-----ccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccc-----cc
Q 038430 302 GGKVRHLGLKFK-GGAS-----FPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIER-----LP 370 (677)
Q Consensus 302 ~~~l~~L~l~~~-~~~~-----~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~-----lp 370 (677)
...++.|++++| .+.. +...+...++|++|++++|.+.......+...+...++|++|+|++|.|.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 567889999998 7743 345677789999999997544333333344556667899999999999883 56
Q ss_pred hhhccCCCcCEEEe--cCCCCccc-----cCcccccccccceeecCccC
Q 038430 371 KTLCELYNLQKLDI--RGCRNLRE-----LPTGIGKLKNMRSLLNGLTC 412 (677)
Q Consensus 371 ~~i~~l~~L~~L~L--~~~~~l~~-----lp~~i~~l~~L~~L~l~~~~ 412 (677)
..+...++|++|+| ++|. ++. +...+...++|++|++++|.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 77888899999999 7787 432 34456666889999999884
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0047 Score=64.17 Aligned_cols=236 Identities=9% Similarity=-0.058 Sum_probs=132.8
Q ss_pred CeEEecCCCCHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHcC--CccEEEEEECCcCCCcc--chhhhhhhhc---C
Q 038430 1 MWVCVSDTFEEISVANAIIEGLGESTSS-LSEFQSLMSHIHRSIE--GKKNFLILNDVWDGDYN--KWAPFFLCLN---H 72 (677)
Q Consensus 1 ~WV~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~~i~~~L~--~kr~LlVlDdvw~~~~~--~~~~l~~~~~---~ 72 (677)
+||+.....+...++..++++++..... ..+..+....+.+.+. +++.+||||+++..... ....+...+. .
T Consensus 82 ~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~ 161 (387)
T 2v1u_A 82 IYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQE 161 (387)
T ss_dssp EEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGC
T ss_pred EEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhh
Confidence 3567777788899999999999765432 2335556666666664 56889999999664211 1222332222 1
Q ss_pred C--CCCcEEEEEcCch--------HHHHhcCCCCeEecCCCChHHHHHHHHHHhhc-CCCCCCCcchhHHHHHHHHHhc-
Q 038430 73 G--LHGSKILVTTRNE--------LVARMMGSTNIIFIEQLTEEECWSLFKRLAFF-GCSFEDCERLEPIGQKIARKCK- 140 (677)
Q Consensus 73 ~--~~gS~IiiTTR~~--------~v~~~~~~~~~~~v~~L~~~ea~~LF~~~af~-~~~~~~~~~~~~~~~~i~~~c~- 140 (677)
. ..+..+|.||+.. .+..++. ...+.+++++.++..+++...+-. .......+ +....++++++
T Consensus 162 ~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 237 (387)
T 2v1u_A 162 LGDRVWVSLVGITNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAR 237 (387)
T ss_dssp C-----CEEEEECSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHS
T ss_pred cCCCceEEEEEEECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHH
Confidence 1 3456788888765 2322222 147899999999999999887531 01111112 34566777777
Q ss_pred --CCch-HHHHHHHHhc-----c--CCCHHHHHHHHhhhhhhhhhcCCCccceeecccccCCCchhhhHHHhhhc-cCCC
Q 038430 141 --GLPI-AAKVIGNLLR-----S--KSTIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFSYCA-VFPK 209 (677)
Q Consensus 141 --GlPL-al~~ig~~L~-----~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a-~fp~ 209 (677)
|.|- |+..+..+.. + .-+.+.++.+++..... .+.-++..++. ..+..+.-.+ .+..
T Consensus 238 ~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~----------~~~~~~~~l~~--~~~~~l~a~~~~~~~ 305 (387)
T 2v1u_A 238 EHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERD----------RVSEVVRTLPL--HAKLVLLSIMMLEDG 305 (387)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH----------HHHHHHHSSCH--HHHHHHHHHHHHSSS
T ss_pred hccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhc----------hHHHHHHcCCH--HHHHHHHHHHHHhcC
Confidence 9994 3333332221 1 13566677666542111 12335566766 5555555444 3322
Q ss_pred CceecHHHHHHHHHH----cCCcCcchhhhHHHhHHHHHHHHHHccCccccc
Q 038430 210 DYNMYKEELISLWMA----QGYLNAEEYEEKEMTGEECFNILAARSFFQEFE 257 (677)
Q Consensus 210 ~~~i~~~~li~~wi~----~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 257 (677)
...+...++.+.... .| .... .......+++.|...+++....
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 306 GRPASTGEIYERYKELTSTLG-LEHV----TLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp SCCEEHHHHHHHHHHHHHHTT-CCCC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCcHHHHHHHHHHHHHhcC-CCCC----CHHHHHHHHHHHHhCCCeEEEe
Confidence 224545544443321 22 1111 1235667899999999998754
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00048 Score=72.23 Aligned_cols=81 Identities=11% Similarity=0.129 Sum_probs=52.4
Q ss_pred cCCCCCCcEEEEecCCCCCCChh-HhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccccccceEeCCccccCCCC
Q 038430 551 LQPPLNVEKLWILFNGGNILPKW-LTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHLKSVKRVGNEFLEIEES 626 (677)
Q Consensus 551 l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~ 626 (677)
+..+++|+.+.+.. .+..++.. +..+.+|+.+.|..+ ++.+.. +.+.. |+.+.|- .+++.|+...+
T Consensus 284 F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip--~sv~~I~~~aF----- 353 (394)
T 4gt6_A 284 FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIP--SSVTKIPESAF----- 353 (394)
T ss_dssp TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEC--TTCCBCCGGGG-----
T ss_pred cccccccccccCCC-cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEEC--cccCEEhHhHh-----
Confidence 44567777777743 33445544 447788888888653 444443 66777 8888885 34777766554
Q ss_pred CCCCCCCCCCCcccCCCccceeeecccc
Q 038430 627 EDDPSSSSSSSSVTAFPKVKSLEIKELE 654 (677)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 654 (677)
..+++|+++.+.+..
T Consensus 354 -------------~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 354 -------------SNCTALNNIEYSGSR 368 (394)
T ss_dssp -------------TTCTTCCEEEESSCH
T ss_pred -------------hCCCCCCEEEECCce
Confidence 567888888887643
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00013 Score=71.38 Aligned_cols=79 Identities=23% Similarity=0.233 Sum_probs=45.2
Q ss_pred CCCCcCEEEecCcccccc---chhhccCCCcCEEEecCCCCccccCccccccc--ccceeecCccCCCcccCC-------
Q 038430 352 KLMHLKYLNLSELHIERL---PKTLCELYNLQKLDIRGCRNLRELPTGIGKLK--NMRSLLNGLTCSLKYMPI------- 419 (677)
Q Consensus 352 ~l~~L~~L~Ls~~~i~~l---p~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~p~------- 419 (677)
++++|+.|+|++|.|+.+ |..+..+++|+.|+|++|. +..+. .+..+. +|+.|++++|.....+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 456677777777776643 3445567777777777766 54442 244444 677777777754444432
Q ss_pred cCCCCCCCCccCc
Q 038430 420 GISKLTSLRTLDK 432 (677)
Q Consensus 420 ~i~~l~~L~~L~l 432 (677)
.+..+.+|+.|+.
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 1344555555553
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.011 Score=61.21 Aligned_cols=233 Identities=9% Similarity=-0.007 Sum_probs=130.5
Q ss_pred eEEecCCC-CHHHHHHHHHHHhcCCCCC--CchHHHHHHHHHHHcCCccEEEEEECCcCCCccc-hhh-hhhhhcCCCCC
Q 038430 2 WVCVSDTF-EEISVANAIIEGLGESTSS--LSEFQSLMSHIHRSIEGKKNFLILNDVWDGDYNK-WAP-FFLCLNHGLHG 76 (677)
Q Consensus 2 WV~vs~~~-~~~~i~~~i~~~l~~~~~~--~~~~~~~~~~i~~~L~~kr~LlVlDdvw~~~~~~-~~~-l~~~~~~~~~g 76 (677)
||+.+... +...++.++++++.+.... ..+.......+.+.++.++.+|||||++...... .+. +...+... .+
T Consensus 86 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~ 164 (384)
T 2qby_B 86 YVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-AN 164 (384)
T ss_dssp EEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SC
T ss_pred EEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cc
Confidence 45555555 7888899999988443221 2234556777788888777799999997642221 222 22222222 57
Q ss_pred cEEEEEcCchH--------HHHhcCCCCeEecCCCChHHHHHHHHHHhhcC-CCCCCCcchhHHHHHHHHHhc---CCch
Q 038430 77 SKILVTTRNEL--------VARMMGSTNIIFIEQLTEEECWSLFKRLAFFG-CSFEDCERLEPIGQKIARKCK---GLPI 144 (677)
Q Consensus 77 S~IiiTTR~~~--------v~~~~~~~~~~~v~~L~~~ea~~LF~~~af~~-~~~~~~~~~~~~~~~i~~~c~---GlPL 144 (677)
.+||+||+... +...++ ..+++++++.++..++|...+-.. ..... -.+....++++|+ |.|-
T Consensus 165 ~~iI~~t~~~~~~~~l~~~l~sr~~--~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~G~~r 239 (384)
T 2qby_B 165 ISVIMISNDINVRDYMEPRVLSSLG--PSVIFKPYDAEQLKFILSKYAEYGLIKGTY---DDEILSYIAAISAKEHGDAR 239 (384)
T ss_dssp EEEEEECSSTTTTTTSCHHHHHTCC--CEEEECCCCHHHHHHHHHHHHHHTSCTTSC---CSHHHHHHHHHHHTTCCCHH
T ss_pred eEEEEEECCCchHhhhCHHHHhcCC--CeEEECCCCHHHHHHHHHHHHHhhcccCCc---CHHHHHHHHHHHHhccCCHH
Confidence 78999998652 222222 389999999999999999875311 11111 1234667777777 8877
Q ss_pred -HHHHHHHHh--c---cCCCHHHHHHHHhhhhhhhhhcCCCccceeecccccCCCchhhhHHHhhhccCCCCceecHHHH
Q 038430 145 -AAKVIGNLL--R---SKSTIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEEL 218 (677)
Q Consensus 145 -al~~ig~~L--~---~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp~~~~i~~~~l 218 (677)
|+..+..+. . ..-+.+.++.+++.... ..+.-+++.|+. ..+..+.-++....+..+. +..
T Consensus 240 ~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~----------~~~~~~~~~l~~--~~~~~l~al~~~~~~~~~~-~~~ 306 (384)
T 2qby_B 240 KAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ----------ERLIEAVKALPF--HYKLALRSLIESEDVMSAH-KMY 306 (384)
T ss_dssp HHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH----------HHHHHHHHSSCH--HHHHHHHHHHTCCBHHHHH-HHH
T ss_pred HHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc----------chHHHHHHcCCH--HHHHHHHHHHHhcccChHH-HHH
Confidence 444333322 1 22456777777764211 123345567766 5555555555411100110 111
Q ss_pred HHHHHHcCCcCcchhhhHHHhHHHHHHHHHHccCcccccc
Q 038430 219 ISLWMAQGYLNAEEYEEKEMTGEECFNILAARSFFQEFEK 258 (677)
Q Consensus 219 i~~wi~~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~ 258 (677)
.......| .... ......++++.|...+++.....
T Consensus 307 ~~~~~~~g-~~~~----~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 307 TDLCNKFK-QKPL----SYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp HHHHHHTT-CCCC----CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHcC-CCCC----CHHHHHHHHHHHHhCCCEEEEec
Confidence 11111122 1111 12345678899999999987544
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.001 Score=64.07 Aligned_cols=105 Identities=12% Similarity=0.088 Sum_probs=75.7
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchHHH-Hh-cCCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNELVA-RM-MGSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~v~-~~-~~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++.+||+||++..+...+..+...+.....+.++|+||+..... .. ......+++++++.++..+++...+.....
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~- 203 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI- 203 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-
Confidence 467999999998765567777777777666678899988765311 11 112358999999999999999987754322
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHHHHHh
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKVIGNLL 153 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L 153 (677)
. --.+....++++|+|.|..+..+...+
T Consensus 204 ~---~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 204 A---HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp C---BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 123457789999999999988776443
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.023 Score=58.95 Aligned_cols=238 Identities=12% Similarity=0.005 Sum_probs=136.2
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHcC--CccEEEEEECCcCCCccchhhhhhhhcCCC----
Q 038430 2 WVCVSDTFEEISVANAIIEGLGESTSS-LSEFQSLMSHIHRSIE--GKKNFLILNDVWDGDYNKWAPFFLCLNHGL---- 74 (677)
Q Consensus 2 WV~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~~i~~~L~--~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~---- 74 (677)
||+.+...+...++..+++.++..... ..+.......+.+.+. +++.+||+|+++..+......+...+....
T Consensus 78 ~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~ 157 (389)
T 1fnn_A 78 YINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGA 157 (389)
T ss_dssp EEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSS
T ss_pred EEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCc
Confidence 455567778889999999998764322 2244555555555554 568899999998765445555555553321
Q ss_pred CCcEEEEEcCchHHHHhcC-------CCCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHh--------
Q 038430 75 HGSKILVTTRNELVARMMG-------STNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKC-------- 139 (677)
Q Consensus 75 ~gS~IiiTTR~~~v~~~~~-------~~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c-------- 139 (677)
.+..||+||+...+...+. ....+.+++++.++..+++...+-...... .--.+....+++++
T Consensus 158 ~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 235 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG--SYSEDILQMIADITGAQTPLDT 235 (389)
T ss_dssp CCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT--SSCHHHHHHHHHHHSBSSTTCT
T ss_pred CCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHhhcccCCC
Confidence 3667888887765443322 123799999999999999988753210000 11234567788888
Q ss_pred -cCCchHHHHHHHH-hc-----cC--CCHHHHHHHHhhhhhhhhhcCCCccceeecccccCCCchhhhHHHhhhccCC--
Q 038430 140 -KGLPIAAKVIGNL-LR-----SK--STIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFP-- 208 (677)
Q Consensus 140 -~GlPLal~~ig~~-L~-----~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp-- 208 (677)
+|.|-.+..+... .. +. -+.+....+.... . ...+.-.+..|+. +.+.++..++.+.
T Consensus 236 ~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~-------~---~~~~~~~l~~l~~--~~~~~L~~l~~~~~~ 303 (389)
T 1fnn_A 236 NRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV-------L---FGISEEVLIGLPL--HEKLFLLAIVRSLKI 303 (389)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-------S---CCCCHHHHHHSCH--HHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH-------h---hhhHHHHHHcCCH--HHHHHHHHHHHHHhh
Confidence 7887554433322 21 11 2233333333321 0 1122334556766 5666666555443
Q ss_pred -CCceecHHHHHHHHHH----cCCcCcchhhhHHHhHHHHHHHHHHccCcccccc
Q 038430 209 -KDYNMYKEELISLWMA----QGYLNAEEYEEKEMTGEECFNILAARSFFQEFEK 258 (677)
Q Consensus 209 -~~~~i~~~~li~~wi~----~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~ 258 (677)
.+..+....+...+.. .|..+ .. ......+++.|...+++.....
T Consensus 304 ~~~~~~~~~~i~~~~~~~~~~~~~~~-~~----~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 304 SHTPYITFGDAEESYKIVCEEYGERP-RV----HSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HCSSCEEHHHHHHHHHHHHHHTTCCC-CC----HHHHHHHHHHHHHTTSSEEEEC
T ss_pred ccCCCccHHHHHHHHHHHHHHcCCCC-CC----HHHHHHHHHHHHhCCCeEEeee
Confidence 2224555555554432 22111 11 1235678999999999987654
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00026 Score=69.28 Aligned_cols=84 Identities=20% Similarity=0.202 Sum_probs=62.0
Q ss_pred cCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCC--CcCEEEecCCCCccccCc-----
Q 038430 323 HGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELY--NLQKLDIRGCRNLRELPT----- 395 (677)
Q Consensus 323 ~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~--~L~~L~L~~~~~l~~lp~----- 395 (677)
.++++|++|+|++|.+. .+..+|..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|+....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~--~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLY--RLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCC--CCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCC--CCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 45788999999974432 1234556667899999999999999876 3345555 999999999995555652
Q ss_pred --ccccccccceeecC
Q 038430 396 --GIGKLKNMRSLLNG 409 (677)
Q Consensus 396 --~i~~l~~L~~L~l~ 409 (677)
.+..+++|+.||-.
T Consensus 244 ~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 244 SAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHCTTCCEESSC
T ss_pred HHHHHHCcccCeECCc
Confidence 36788999988754
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0056 Score=63.97 Aligned_cols=100 Identities=9% Similarity=0.125 Sum_probs=63.9
Q ss_pred hcCCCCCCcEEEEecCCCCCCCh-hHhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccccccceEeCCccccCCC
Q 038430 550 ALQPPLNVEKLWILFNGGNILPK-WLTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHLKSVKRVGNEFLEIEE 625 (677)
Q Consensus 550 ~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~ 625 (677)
.+..+.+|+.+.+.... ..+.. .+.++++|+.+.+.. .++.++. +.+.. |+.+.|.. .++.|+...+
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF---- 330 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAF---- 330 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTT----
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHh----
Confidence 45566788888875543 23332 345788999999863 4566664 77788 99999963 5888877654
Q ss_pred CCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCccccc
Q 038430 626 SEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLR 676 (677)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~ 676 (677)
..+.+|+++.+-..- +.+.. ..+..+++|+.++
T Consensus 331 --------------~~C~~L~~i~ip~sv-~~I~~---~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 331 --------------AGCEQLERIAIPSSV-TKIPE---SAFSNCTALNNIE 363 (394)
T ss_dssp --------------TTCTTCCEEEECTTC-CBCCG---GGGTTCTTCCEEE
T ss_pred --------------hCCCCCCEEEECccc-CEEhH---hHhhCCCCCCEEE
Confidence 567889999884211 32321 2222467777654
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.015 Score=60.26 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=50.1
Q ss_pred cCCCCCCcEEEEecCCCCCCChh-HhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccccccceEeCCccccCCCC
Q 038430 551 LQPPLNVEKLWILFNGGNILPKW-LTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHLKSVKRVGNEFLEIEES 626 (677)
Q Consensus 551 l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~ 626 (677)
+..+.+|+.+.+..+ +..++.. +..+++|+.+.+.++ .++.++. +.+.. |+.+.|. ++++.|+...+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp--~~l~~I~~~aF----- 329 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLP--TALKTIQVYAF----- 329 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECC--TTCCEECTTTT-----
T ss_pred cceeehhcccccccc-ceecccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcC--ccccEEHHHHh-----
Confidence 344567777777443 3344433 447788888888765 5555553 66777 8888885 34777766544
Q ss_pred CCCCCCCCCCCcccCCCccceeee
Q 038430 627 EDDPSSSSSSSSVTAFPKVKSLEI 650 (677)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~L~~L~l 650 (677)
..+.+|+++.+
T Consensus 330 -------------~~C~~L~~i~i 340 (379)
T 4h09_A 330 -------------KNCKALSTISY 340 (379)
T ss_dssp -------------TTCTTCCCCCC
T ss_pred -------------hCCCCCCEEEE
Confidence 45667777776
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.029 Score=52.77 Aligned_cols=102 Identities=6% Similarity=-0.109 Sum_probs=70.6
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchHH-HHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNELV-ARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~v-~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
.++.+||+||++.........+...+.....+.++|+||+.... .... .....+++++++.++..+++...+......
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 57889999999876555566677777665667889999876531 1111 112379999999999999998876432221
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKVIG 150 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~ig 150 (677)
--.+....+++.++|.|..+..+.
T Consensus 181 ----~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 181 ----ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp ----BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 123456778899999999765444
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.059 Score=55.65 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=50.4
Q ss_pred hcCCCCCCcEEEEecCCCCCCChh-HhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccccccceEeCCccc
Q 038430 550 ALQPPLNVEKLWILFNGGNILPKW-LTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHLKSVKRVGNEFL 621 (677)
Q Consensus 550 ~l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~~~l~~i~~~~~ 621 (677)
.+..+++|+++.+.++.+..++.. +.++.+|+.+.|..+ ++.++. +.+.. |+.+.+. .+++.|+...+
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip--~~v~~I~~~aF 352 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP--KSITLIESGAF 352 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC--TTCCEECTTTT
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC--CccCEEchhHh
Confidence 456678999999988877766544 568899999999753 555553 77788 9998885 35888876544
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.015 Score=60.31 Aligned_cols=237 Identities=9% Similarity=-0.003 Sum_probs=125.3
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHcC--CccEEEEEECCcCCC----ccchhhhhhhhcC-C
Q 038430 2 WVCVSDTFEEISVANAIIEGLGESTSS-LSEFQSLMSHIHRSIE--GKKNFLILNDVWDGD----YNKWAPFFLCLNH-G 73 (677)
Q Consensus 2 WV~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~~i~~~L~--~kr~LlVlDdvw~~~----~~~~~~l~~~~~~-~ 73 (677)
||+.+...+...++..++++++..... ..+..+....+.+.+. +++.+||+|+++... ......+...+.. .
T Consensus 81 ~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~ 160 (386)
T 2qby_A 81 YINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVN 160 (386)
T ss_dssp EEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCC
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcC
Confidence 455556667778888888887654322 2234555555555554 458999999996531 2233334333422 2
Q ss_pred CCCcEEEEEcCchHHHHhcC-------CCCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhc---CCc
Q 038430 74 LHGSKILVTTRNELVARMMG-------STNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCK---GLP 143 (677)
Q Consensus 74 ~~gS~IiiTTR~~~v~~~~~-------~~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~---GlP 143 (677)
..+..+|+||+.......+. ....+++++++.++..+++...+-...... .--.+....+++.++ |.|
T Consensus 161 ~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~G~~ 238 (386)
T 2qby_A 161 KSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPG--VLPDNVIKLCAALAAREHGDA 238 (386)
T ss_dssp C--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSS--CSCHHHHHHHHHHHHHTTCCH
T ss_pred CCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCC--CCCHHHHHHHHHHHHHhcCCH
Confidence 33556788887654322221 124799999999999999988642111000 122345666777777 998
Q ss_pred hHHHH-HHHHhc-----c--CCCHHHHHHHHhhhhhhhhhcCCCccceeecccccCCCchhhhHHHhhhccCCC-C-cee
Q 038430 144 IAAKV-IGNLLR-----S--KSTIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPK-D-YNM 213 (677)
Q Consensus 144 Lal~~-ig~~L~-----~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp~-~-~~i 213 (677)
..+.. +..+.. + .-+.+.++.+++.... ..+.-.+..++. ..+..+.-++...+ + ..+
T Consensus 239 r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~----------~~~~~~~~~l~~--~~~~il~ai~~~~~~g~~~~ 306 (386)
T 2qby_A 239 RRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER----------DRVRDIILTLPF--HSKLVLMAVVSISSEENVVS 306 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH----------HHHHHHHHTSCH--HHHHHHHHHHHHC-----CE
T ss_pred HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhh----------chHHHHHHcCCH--HHHHHHHHHHHHHhcCCCce
Confidence 84433 332221 1 2345666666553211 122334556665 55555554543211 1 123
Q ss_pred cHHHHHHHHH--H--cCCcCcchhhhHHHhHHHHHHHHHHccCccccc
Q 038430 214 YKEELISLWM--A--QGYLNAEEYEEKEMTGEECFNILAARSFFQEFE 257 (677)
Q Consensus 214 ~~~~li~~wi--~--~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 257 (677)
...++...+. + .| +... .......+++.|...+++....
T Consensus 307 ~~~~l~~~~~~~~~~~g-~~~~----~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 307 TTGAVYETYLNICKKLG-VEAV----TQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp EHHHHHHHHHHHHHHHT-CCCC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred eHHHHHHHHHHHHHhcC-CCCC----CHHHHHHHHHHHHhCCCEEEEe
Confidence 3433322221 1 12 1111 1123566789999999997643
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.094 Score=52.63 Aligned_cols=104 Identities=9% Similarity=0.054 Sum_probs=70.6
Q ss_pred CCccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchH-HHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCC
Q 038430 44 EGKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNEL-VARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCS 121 (677)
Q Consensus 44 ~~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~ 121 (677)
.+++.+||+||++......+..+...+.....+.++|+||+... +...+ .....+++++++.++..+++...+.....
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~ 184 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV 184 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC
Confidence 44688999999988655566677777766556778888887642 11111 12348999999999999999887642221
Q ss_pred CCCCcchhHHHHHHHHHhcCCchH-HHHHHH
Q 038430 122 FEDCERLEPIGQKIARKCKGLPIA-AKVIGN 151 (677)
Q Consensus 122 ~~~~~~~~~~~~~i~~~c~GlPLa-l~~ig~ 151 (677)
. --.+....+++.|+|.|.. +..+..
T Consensus 185 -~---~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 185 -K---YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp -C---BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -C---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 1234567899999999954 444443
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.065 Score=45.88 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=27.4
Q ss_pred cCCcccCCCCCcCEEEecCccccccchh-hccCCCcCEEEecCCC
Q 038430 345 KIPENVGKLMHLKYLNLSELHIERLPKT-LCELYNLQKLDIRGCR 388 (677)
Q Consensus 345 ~lp~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~L~~~~ 388 (677)
.+|..+. .+|++|+|++|.|+.+|.. |..+++|++|+|.+|+
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5554432 3577777777777777654 5667777777777665
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.17 Score=50.87 Aligned_cols=105 Identities=13% Similarity=0.058 Sum_probs=65.1
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCC------------------CCcEEEEEcCchH-HHHhc--CCCCeEecCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGL------------------HGSKILVTTRNEL-VARMM--GSTNIIFIEQL 103 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~------------------~gS~IiiTTR~~~-v~~~~--~~~~~~~v~~L 103 (677)
.+..+|++|++..........+...+.... .+.++|.||.... +...+ .....+.++++
T Consensus 89 ~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~ 168 (324)
T 1hqc_A 89 EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYY 168 (324)
T ss_dssp CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCC
T ss_pred cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCC
Confidence 356789999997764444444544443321 2345666665432 11111 01347999999
Q ss_pred ChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHHh
Q 038430 104 TEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLL 153 (677)
Q Consensus 104 ~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L 153 (677)
+.+|..+++...+..... . --.+....++.++.|.|-.+..+...+
T Consensus 169 ~~~e~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 169 TPEELAQGVMRDARLLGV-R---ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CHHHHHHHHHHHHHTTTC-C---CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999998887643222 1 123557889999999998887766544
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.073 Score=45.53 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=43.0
Q ss_pred CEEEecCcccc--ccchhhccCCCcCEEEecCCCCccccCcc-cccccccceeecCccC
Q 038430 357 KYLNLSELHIE--RLPKTLCELYNLQKLDIRGCRNLRELPTG-IGKLKNMRSLLNGLTC 412 (677)
Q Consensus 357 ~~L~Ls~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 412 (677)
..++-+++.++ .+|..+. .+|++|+|++|. +..+|.. +..+++|+.|++.+|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 36788888888 8886543 479999999998 8888764 6788999999999884
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.19 E-value=0.41 Score=47.89 Aligned_cols=101 Identities=12% Similarity=-0.021 Sum_probs=71.1
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchH-----HHHhcCCCCeEecCCCChHHHHHHHHHHhhcC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNEL-----VARMMGSTNIIFIEQLTEEECWSLFKRLAFFG 119 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~-----v~~~~~~~~~~~v~~L~~~ea~~LF~~~af~~ 119 (677)
+++.+||+||++......+..+...+.....+.++|+||.... +..++ ..+++++++.++..+++...+...
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~---~~~~~~~l~~~~~~~~l~~~~~~~ 185 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC---AIFRFRPLRDEDIAKRLRYIAENE 185 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE---EEEECCCCCHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC---cEEEecCCCHHHHHHHHHHHHHhc
Confidence 5688999999987765666777777766666788998887642 22332 378999999999999998876432
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCchHHHHHHHH
Q 038430 120 CSFEDCERLEPIGQKIARKCKGLPIAAKVIGNL 152 (677)
Q Consensus 120 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~ 152 (677)
.. .--.+....++..++|.|-.+..+-..
T Consensus 186 ~~----~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 186 GL----ELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp TC----EECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CC----CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 21 112345677889999999876554433
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=91.22 E-value=0.91 Score=46.33 Aligned_cols=102 Identities=13% Similarity=0.108 Sum_probs=69.0
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchH-HHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNEL-VARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++.+||+||+...+......+...+.....+..+|++|.... +.... .....+++++++.++..+++...+-....
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~- 196 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI- 196 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 5678999999987655566777777766555677777776432 11111 12357999999999999998876532111
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKVIG 150 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~ig 150 (677)
. --.+....+++.++|.|..+..+.
T Consensus 197 ~---~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 197 A---HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp C---BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred C---CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1 123446778999999999876554
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=90.90 E-value=0.033 Score=51.29 Aligned_cols=14 Identities=21% Similarity=0.301 Sum_probs=6.8
Q ss_pred CCcCEEEecCcccc
Q 038430 354 MHLKYLNLSELHIE 367 (677)
Q Consensus 354 ~~L~~L~Ls~~~i~ 367 (677)
+.|+.|+|++|.|.
T Consensus 98 ~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 98 PSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECCSSBCC
T ss_pred CccCeEecCCCcCC
Confidence 44555555555443
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=89.01 E-value=2.4 Score=41.86 Aligned_cols=102 Identities=6% Similarity=-0.078 Sum_probs=68.2
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchH-HHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNEL-VARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-+||+|++..........+...+.....+.++|+||.... +.... .....+++++++.++..+++...+-....
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~- 179 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV- 179 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCC-
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 5688999999987655556667777766556778888876543 11111 11348999999999999998876633221
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKVIG 150 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~ig 150 (677)
. --.+....++..++|.+-.+..+-
T Consensus 180 ~---i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 180 K---ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp C---BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 123456778888999887655433
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=88.71 E-value=0.16 Score=46.66 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=31.0
Q ss_pred cCCCcccEEEeCCC-CCCCCCCccCCcccCCCCCcCEEEecCcccc-----ccchhhccCCCcCEEEecCCC
Q 038430 323 HGLNRLRTLLIDDE-SPPNSSLDKIPENVGKLMHLKYLNLSELHIE-----RLPKTLCELYNLQKLDIRGCR 388 (677)
Q Consensus 323 ~~l~~L~~L~l~~~-~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~-----~lp~~i~~l~~L~~L~L~~~~ 388 (677)
..-+.|+.|+++++ .+.......+-+.+..-..|+.|+|++|.|. .+...+..-+.|++|+|++|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 33455666666541 1111111122233444456666666666654 233334444556666666555
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=88.23 E-value=0.66 Score=43.84 Aligned_cols=100 Identities=11% Similarity=0.043 Sum_probs=60.6
Q ss_pred ccEEEEEECCcCCCccc--hhhhhhhhcCC-CCC-cEEEEEcCc---------hHHHHhcCCCCeEecCCCChHHHHHHH
Q 038430 46 KKNFLILNDVWDGDYNK--WAPFFLCLNHG-LHG-SKILVTTRN---------ELVARMMGSTNIIFIEQLTEEECWSLF 112 (677)
Q Consensus 46 kr~LlVlDdvw~~~~~~--~~~l~~~~~~~-~~g-S~IiiTTR~---------~~v~~~~~~~~~~~v~~L~~~ea~~LF 112 (677)
++-+||+||++...... ...+...+... ..| .+||+||+. ..+..++.....+++++++.++..+++
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l 183 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAAL 183 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHH
Confidence 45689999997653222 33344433221 122 247777762 333333332358999999999999999
Q ss_pred HHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHH
Q 038430 113 KRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVI 149 (677)
Q Consensus 113 ~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~i 149 (677)
...+-.... .--.+....+++.++|.+-.+..+
T Consensus 184 ~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 184 QRRAAMRGL----QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHTTC----CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHcCC----CCCHHHHHHHHHHccCCHHHHHHH
Confidence 887643221 112345677888899988766543
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=85.39 E-value=2.4 Score=44.52 Aligned_cols=119 Identities=15% Similarity=0.070 Sum_probs=71.6
Q ss_pred ccEEEEEECCcCCCc--cchhhhhhhhcC-CCCCcEEEEEcCc---------hHHHHhcCCCCeEecCCCChHHHHHHHH
Q 038430 46 KKNFLILNDVWDGDY--NKWAPFFLCLNH-GLHGSKILVTTRN---------ELVARMMGSTNIIFIEQLTEEECWSLFK 113 (677)
Q Consensus 46 kr~LlVlDdvw~~~~--~~~~~l~~~~~~-~~~gS~IiiTTR~---------~~v~~~~~~~~~~~v~~L~~~ea~~LF~ 113 (677)
+.-+|++||++.... ...+.+...+.. ...|..||+||.. ..+..++....++.+++++.++-.+++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence 567899999976532 122333333322 2347789998875 3455555545689999999999999998
Q ss_pred HHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHH------hccC-CCHHHHHHHHhh
Q 038430 114 RLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNL------LRSK-STIKDWQRILDS 168 (677)
Q Consensus 114 ~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~------L~~~-~~~~~w~~~l~~ 168 (677)
+.+-.... ..++ ++...++..+.|.+-.+..+-.. ..++ -+.+.++.+++.
T Consensus 274 ~~~~~~~~-~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 274 KMLEIEHG-ELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHTC-CCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHcCC-CCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 87642211 1112 34567888888887655432211 1122 355666666653
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.54 E-value=12 Score=37.11 Aligned_cols=109 Identities=7% Similarity=-0.000 Sum_probs=60.6
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCCCCc-hHHHHHHHHHHHc---CCccEEEEEECCcCCCccchhhhhhhhc----CCC
Q 038430 3 VCVSDTFEEISVANAIIEGLGESTSSLS-EFQSLMSHIHRSI---EGKKNFLILNDVWDGDYNKWAPFFLCLN----HGL 74 (677)
Q Consensus 3 V~vs~~~~~~~i~~~i~~~l~~~~~~~~-~~~~~~~~i~~~L---~~kr~LlVlDdvw~~~~~~~~~l~~~~~----~~~ 74 (677)
|+.....+...++..|++++.+...... ..+.+...+ +.+ ++++++||||.++... .-+.+...+. ...
T Consensus 86 INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f-~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s 162 (318)
T 3te6_A 86 IDALELAGMDALYEKIWFAISKENLCGDISLEALNFYI-TNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNS 162 (318)
T ss_dssp EETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHH-HHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSC
T ss_pred EeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHH-HHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCC
Confidence 3334556778899999999976542222 233333333 333 4678999999997753 2233333332 112
Q ss_pred CCcEEEEEcCch----H-H----HHhcCCCCeEecCCCChHHHHHHHHHHh
Q 038430 75 HGSKILVTTRNE----L-V----ARMMGSTNIIFIEQLTEEECWSLFKRLA 116 (677)
Q Consensus 75 ~gS~IiiTTR~~----~-v----~~~~~~~~~~~v~~L~~~ea~~LF~~~a 116 (677)
+.+ ||.++.+. . + ..+++ ...+..++++.++-.+++...+
T Consensus 163 ~~~-vI~i~n~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 163 KLS-IICVGGHNVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CEE-EEEECCSSCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred cEE-EEEEecCcccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 222 33333222 1 1 22332 2368999999999999988865
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=82.68 E-value=6.5 Score=39.34 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=66.0
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchH-HHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNEL-VARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|+++..+......+...+..-..+..+|++|.+.+ +.... .-...+++++++.++..+.+...+ .
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~- 181 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T- 181 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C-
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C-
Confidence 4677899999987765566677777776656677777776542 33322 124589999999999998887764 1
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKV 148 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~ 148 (677)
--.+....++..++|.|..+..
T Consensus 182 ----~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 182 ----MSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp ----CCHHHHHHHHHHTTTCHHHHHH
T ss_pred ----CCHHHHHHHHHHcCCCHHHHHH
Confidence 1123456788999999976654
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=82.60 E-value=3.6 Score=41.49 Aligned_cols=102 Identities=9% Similarity=0.039 Sum_probs=65.1
Q ss_pred ccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCCC
Q 038430 46 KKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSFE 123 (677)
Q Consensus 46 kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~~ 123 (677)
++-++|+|++...+......+...+.....+.++|++|.+. .+.... .-...+++++++.++..+.+...+-.... .
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 212 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-Q 212 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-E
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-C
Confidence 55599999998765555566776666544567787777653 222211 11357999999999999998887632211 1
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHH
Q 038430 124 DCERLEPIGQKIARKCKGLPIAAKVIG 150 (677)
Q Consensus 124 ~~~~~~~~~~~i~~~c~GlPLal~~ig 150 (677)
.+ -.+....+++.++|.+-.+..+-
T Consensus 213 ~~--~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 213 LE--TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EC--CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CC--cHHHHHHHHHHcCCCHHHHHHHH
Confidence 10 02456778888888876654433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 677 | ||||
| d2a5yb3 | 277 | c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor | 1e-24 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 4e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 0.003 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 6e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.001 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 0.002 |
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Score = 101 bits (253), Expect = 1e-24
Identities = 30/214 (14%), Positives = 61/214 (28%), Gaps = 28/214 (13%)
Query: 1 MWVCVSDTFEEISVANAIIEGLGE----------STSSLSEFQSLMSHIHRSIEGKKNFL 50
+W+ S T + + L S ++ + I+
Sbjct: 80 VWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLF 139
Query: 51 ILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIF-IEQLTEEECW 109
+ +DV + +WA + LVTTR+ ++ T + L +EC+
Sbjct: 140 VFDDVVQEETIRWAQEL--------RLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECY 191
Query: 110 SLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSE 169
+ E E + K G P + K+ ++++
Sbjct: 192 DFLEAYGMPMPVGEKEE---DVLNKTIELSSGNPATLMMFFKSCEPKT----FEKMAQLN 244
Query: 170 MWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFSY 203
G+ SY L+ ++R
Sbjct: 245 NKLESRGLVGVECITPYSYKSLAMA--LQRCVEV 276
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (93), Expect = 4e-04
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 2/96 (2%)
Query: 325 LNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHI--ERLPKTLCELYNLQKL 382
RL + + P S +D+ +++++LS I L L + LQ L
Sbjct: 17 TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 76
Query: 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMP 418
+ G R + + K N+ L
Sbjct: 77 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 112
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (86), Expect = 0.003
Identities = 12/116 (10%), Positives = 37/116 (31%), Gaps = 3/116 (2%)
Query: 347 PENVGKLM--HLKYLNLSELHIERLPKTLCELYNLQKLDIRGCR-NLRELPTGIGKLKNM 403
P+ G+L+ + +++ + +Q +D+ + L + + +
Sbjct: 14 PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 73
Query: 404 RSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKC 459
++L + ++K ++L L+ G + L +
Sbjct: 74 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 129
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.0 bits (92), Expect = 6e-04
Identities = 28/222 (12%), Positives = 68/222 (30%), Gaps = 5/222 (2%)
Query: 263 DIMSCKMHDIVHDFAQFVSSKECLWLEINSTKESVINAFGGKVRHLGLKFKGGASFPMSI 322
+++ K+ I + E L+L N K + ++ L + S+
Sbjct: 61 ILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSV 119
Query: 323 HGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKL 382
++ + + P S + L Y+ +++ +I +P+ L +L +L
Sbjct: 120 FNGLNQMIVV-ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP--SLTEL 176
Query: 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGG 442
+ G + + + L N+ L ++ LR L G
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 236
Query: 443 STCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENL 484
+ ++ L I + + + + +
Sbjct: 237 GLADHKYIQVVYL-HNNNISAIGSNDFCPPGYNTKKASYSGV 277
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (89), Expect = 0.001
Identities = 34/215 (15%), Positives = 55/215 (25%), Gaps = 5/215 (2%)
Query: 181 LTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEKEMTG 240
L L + K FS K + L + + +E +
Sbjct: 31 AIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88
Query: 241 EECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLEINSTKESVINA 300
I + K VH + IN +
Sbjct: 89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148
Query: 301 FGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLN 360
G + L + N + ++ N + + L+
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILD 207
Query: 361 LSELHIERLPKTLCELYNLQKLDIRGCRNLRELPT 395
+S I LP L NL+KL R NL++LPT
Sbjct: 208 ISRTRIHSLPSYG--LENLKKLRARSTYNLKKLPT 240
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 38.6 bits (88), Expect = 0.002
Identities = 20/209 (9%), Positives = 53/209 (25%), Gaps = 3/209 (1%)
Query: 186 LSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEKEMTGEECFN 245
L Y ++ ++ + + + +++ +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 246 ILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLEINSTKESVINAFGGKV 305
S+ + I ++ + ++ ++ + K
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 306 RHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELH 365
K +F + GL++ L N +P+ + +L L LN+S +
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN---NRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 366 IERLPKTLCELYNLQKLDIRGCRNLRELP 394
+ L + L P
Sbjct: 280 LCGEIPQGGNLQRFDVSAYANNKCLCGSP 308
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 677 | |||
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 99.94 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.8 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.73 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.73 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.7 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.65 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.64 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.55 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.53 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.52 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.5 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.5 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.47 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.46 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.44 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.39 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.35 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.35 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.32 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.31 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.28 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.28 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.2 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.19 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.17 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.09 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.96 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.91 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.9 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.86 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.75 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.64 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.6 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.58 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.57 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.27 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.29 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 96.98 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 95.89 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 95.28 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 94.31 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.49 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 92.88 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 92.14 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 85.23 |
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.94 E-value=7.2e-27 Score=232.05 Aligned_cols=186 Identities=16% Similarity=0.123 Sum_probs=148.1
Q ss_pred CeEEecCCCCHHHHHHHHHHHh---cCCC-------CCCchHHHHHHHHHHHcCCccEEEEEECCcCCCccchhhhhhhh
Q 038430 1 MWVCVSDTFEEISVANAIIEGL---GEST-------SSLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDYNKWAPFFLCL 70 (677)
Q Consensus 1 ~WV~vs~~~~~~~i~~~i~~~l---~~~~-------~~~~~~~~~~~~i~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~~ 70 (677)
+||+|++.++...+...+...+ +... ....+.......+.+.+.++|+|+||||||+. ..|..+.
T Consensus 80 ~Wv~vs~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~--~~~~~~~--- 154 (277)
T d2a5yb3 80 VWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE--ETIRWAQ--- 154 (277)
T ss_dssp EEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH--HHHHHHH---
T ss_pred EEEEecCCCCHHHHHHHHHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHH--hhhhhhc---
Confidence 5999999999888877765543 2221 12234555667788999999999999999987 4444332
Q ss_pred cCCCCCcEEEEEcCchHHHHhcCCC-CeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHH
Q 038430 71 NHGLHGSKILVTTRNELVARMMGST-NIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVI 149 (677)
Q Consensus 71 ~~~~~gS~IiiTTR~~~v~~~~~~~-~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~i 149 (677)
..|||||||||++.++..+... ..|+|++|+.+|||+||+++||....+ +..++++++|+++|+|+||||+++
T Consensus 155 ---~~~srilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~---~~~~~~~~~iv~~c~GlPLAl~~i 228 (277)
T d2a5yb3 155 ---ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVG---EKEEDVLNKTIELSSGNPATLMMF 228 (277)
T ss_dssp ---HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---ccCceEEEEeehHHHHHhcCCCCceEECCCCCHHHHHHHHHHHhCCccCc---hhhHHHHHHHHHHhCCCHHHHHHH
Confidence 2489999999999999887654 689999999999999999999865442 456889999999999999999999
Q ss_pred HHHhccCCCHHHHHHHHhhhhhhhhhcCCCccceeecccccCCCchhhhHHHhh
Q 038430 150 GNLLRSKSTIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFSY 203 (677)
Q Consensus 150 g~~L~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~ 203 (677)
|+.|+.+ +.+.|.+..+... .....++..++..||+.||+ ++|.||.+
T Consensus 229 g~~l~~k-~~~~~~~~~~~L~---~~~~~~v~~il~~sY~~L~~--~lk~c~~~ 276 (277)
T d2a5yb3 229 FKSCEPK-TFEKMAQLNNKLE---SRGLVGVECITPYSYKSLAM--ALQRCVEV 276 (277)
T ss_dssp HTTCCSS-SHHHHHHHHHHHH---HHCSSTTCCCSSSSSSSHHH--HHHHHHHT
T ss_pred HHHhccC-CHHHHHHHHHHHh---cCcHHHHHHHHHHHHhcccH--HHHHHHHh
Confidence 9999877 5888888766422 23457899999999999999 99999975
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.80 E-value=2.1e-20 Score=189.76 Aligned_cols=249 Identities=20% Similarity=0.202 Sum_probs=192.7
Q ss_pred CCceEEEEEEecCCC---cccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccccc-chhhccCC
Q 038430 302 GGKVRHLGLKFKGGA---SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERL-PKTLCELY 377 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~---~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~ 377 (677)
..+++.|++.++.+. .+|..+.++++|++|+++++ +...+.+|..|+++++|++|+|++|.+..+ |..+..+.
T Consensus 49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~---N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~ 125 (313)
T d1ogqa_ 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI---NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEE---TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred cEEEEEEECCCCCCCCCCCCChHHhcCccccccccccc---cccccccccccccccccchhhhccccccccccccccchh
Confidence 457999999998775 57899999999999999851 233457999999999999999999998854 55689999
Q ss_pred CcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCC-CccCceeeCCCcCCCCcccccccccCCcC
Q 038430 378 NLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSL-RTLDKFAVGGGVDGGSTCRLECLKNFQLI 456 (677)
Q Consensus 378 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L-~~L~l~~~~~~~~~~~~~~~~~L~~l~~L 456 (677)
+|+++++++|.....+|..++++++|+++++++|...+.+|..++.+..+ +.+....+... ......+..+..+
T Consensus 126 ~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~-----~~~~~~~~~l~~~ 200 (313)
T d1ogqa_ 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-----GKIPPTFANLNLA 200 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-----EECCGGGGGCCCS
T ss_pred hhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccc-----ccccccccccccc
Confidence 99999999999788899999999999999999997777899888888776 55665554433 2233444554433
Q ss_pred CcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhh
Q 038430 457 RKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEE 536 (677)
Q Consensus 457 ~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (677)
.+.+.... ........+..+++|+.|+++.+....
T Consensus 201 -~l~l~~~~----~~~~~~~~~~~~~~l~~l~~~~~~l~~---------------------------------------- 235 (313)
T d1ogqa_ 201 -FVDLSRNM----LEGDASVLFGSDKNTQKIHLAKNSLAF---------------------------------------- 235 (313)
T ss_dssp -EEECCSSE----EEECCGGGCCTTSCCSEEECCSSEECC----------------------------------------
T ss_pred -cccccccc----ccccccccccccccccccccccccccc----------------------------------------
Confidence 34444321 112233446677889999888762111
Q ss_pred hhcchhhHHHHhhhcCCCCCCcEEEEecCCCC-CCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccc
Q 038430 537 RRRKNEKDEQLLEALQPPLNVEKLWILFNGGN-ILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSV 613 (677)
Q Consensus 537 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l 613 (677)
.+..+..+++|+.|+|++|.+. .+|.+++++++|++|+|++|.....+|.++.+. |+.|++.+.+.+
T Consensus 236 ----------~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l 304 (313)
T d1ogqa_ 236 ----------DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ----------BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred ----------cccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccc
Confidence 1234566789999999999998 899999999999999999995555899999999 999999985433
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.73 E-value=2.5e-17 Score=171.70 Aligned_cols=79 Identities=22% Similarity=0.243 Sum_probs=62.2
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+++.|++.++++..+. .+..+++|++|++++ +.+..+|+ ++++++|++|++++|.+..+++ ++++++|+.
T Consensus 43 l~~l~~L~l~~~~I~~l~-gl~~L~nL~~L~Ls~-----N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~ 114 (384)
T d2omza2 43 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSN-----NQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTG 114 (384)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCCEEECCS-----SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred hCCCCEEECCCCCCCCcc-ccccCCCCCEEeCcC-----CcCCCCcc-ccCCcccccccccccccccccc-ccccccccc
Confidence 346788888888888774 577788899999885 44566653 8888899999999998887754 788889999
Q ss_pred EEecCCC
Q 038430 382 LDIRGCR 388 (677)
Q Consensus 382 L~L~~~~ 388 (677)
|+++++.
T Consensus 115 L~~~~~~ 121 (384)
T d2omza2 115 LTLFNNQ 121 (384)
T ss_dssp EECCSSC
T ss_pred ccccccc
Confidence 9888765
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.73 E-value=1.6e-17 Score=167.52 Aligned_cols=280 Identities=15% Similarity=0.132 Sum_probs=188.3
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCcccccc-chhhccCCCcCEEEe
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERL-PKTLCELYNLQKLDI 384 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~L 384 (677)
.++-.+.++.++|..+. +++++|++++ +.+..+|+ .|.++++|++|++++|.+..+ |..|.++++|++|++
T Consensus 14 ~~~C~~~~L~~lP~~l~--~~l~~L~Ls~-----N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l 86 (305)
T d1xkua_ 14 VVQCSDLGLEKVPKDLP--PDTALLDLQN-----NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86 (305)
T ss_dssp EEECTTSCCCSCCCSCC--TTCCEEECCS-----SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred EEEecCCCCCccCCCCC--CCCCEEECcC-----CcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence 34445556677776553 5788888884 46677775 478888888888888888876 445888888888888
Q ss_pred cCCCCccccCcccccccccceeecCccCCCcccCCc-CCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 385 RGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 385 ~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
++|+ ++.+|..+ ...|+.|++..|. +..++.. +.....+..+....+.... .......+..+++|+.+.+.+
T Consensus 87 ~~n~-l~~l~~~~--~~~l~~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~n~~~~---~~~~~~~~~~l~~L~~l~l~~ 159 (305)
T d1xkua_ 87 SKNQ-LKELPEKM--PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS---SGIENGAFQGMKKLSYIRIAD 159 (305)
T ss_dssp CSSC-CSBCCSSC--CTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG---GGBCTTGGGGCTTCCEEECCS
T ss_pred cCCc-cCcCccch--hhhhhhhhccccc-hhhhhhhhhhccccccccccccccccc---cCCCccccccccccCcccccc
Confidence 8887 77787643 3567888887774 4444432 3344445555444332221 122334566677777777766
Q ss_pred ccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhh
Q 038430 464 LSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEK 543 (677)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (677)
..- ...+ ...+++|+.|+++++....
T Consensus 160 n~l-~~l~------~~~~~~L~~L~l~~n~~~~----------------------------------------------- 185 (305)
T d1xkua_ 160 TNI-TTIP------QGLPPSLTELHLDGNKITK----------------------------------------------- 185 (305)
T ss_dssp SCC-CSCC------SSCCTTCSEEECTTSCCCE-----------------------------------------------
T ss_pred CCc-cccC------cccCCccCEEECCCCcCCC-----------------------------------------------
Confidence 421 1111 1235788888887661111
Q ss_pred HHHHhhhcCCCCCCcEEEEecCCCCCC-ChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccceEeCCcc
Q 038430 544 DEQLLEALQPPLNVEKLWILFNGGNIL-PKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVKRVGNEF 620 (677)
Q Consensus 544 ~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~~i~~~~ 620 (677)
.....+..++.++.|++++|.+..+ |.++..+++|++|+|++| .++.+|. +..++ |++|++++ ++|+.++...
T Consensus 186 --~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~-N~i~~i~~~~ 261 (305)
T d1xkua_ 186 --VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN-NNISAIGSND 261 (305)
T ss_dssp --ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS-SCCCCCCTTS
T ss_pred --CChhHhhccccccccccccccccccccccccccccceeeecccc-cccccccccccccCCCEEECCC-CccCccChhh
Confidence 1224556778999999999998876 567889999999999999 7778875 88999 99999998 5799987654
Q ss_pred ccCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCccc
Q 038430 621 LEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSS 674 (677)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~ 674 (677)
+... ......++|+.|.+.+++-+.|... +. .|+.|+.
T Consensus 262 f~~~------------~~~~~~~~L~~L~L~~N~~~~~~~~--~~--~f~~~~~ 299 (305)
T d1xkua_ 262 FCPP------------GYNTKKASYSGVSLFSNPVQYWEIQ--PS--TFRCVYV 299 (305)
T ss_dssp SSCS------------SCCTTSCCCSEEECCSSSSCGGGSC--GG--GGTTCCC
T ss_pred ccCc------------chhcccCCCCEEECCCCcCccCcCC--Hh--Hhccccc
Confidence 4211 1124568899999999886555554 55 6776654
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.70 E-value=4e-18 Score=172.70 Aligned_cols=248 Identities=16% Similarity=0.139 Sum_probs=179.1
Q ss_pred CcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecC-cccc-ccchhhccCCCcCEEEecCCCCccccCccccccccc
Q 038430 326 NRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSE-LHIE-RLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNM 403 (677)
Q Consensus 326 ~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~-~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L 403 (677)
.+++.|+++++.+. ....+|..++++++|++|+|++ |.+. .+|+.|++|++|++|+|++|......|..+..+.+|
T Consensus 50 ~~v~~L~L~~~~l~--g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L 127 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLP--KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCS--SCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred EEEEEEECCCCCCC--CCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhh
Confidence 46899999974322 1236889999999999999997 5676 899999999999999999999555666778999999
Q ss_pred ceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcC-CcccccCccCCCChhHHHHhhccCCc
Q 038430 404 RSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLI-RKCGIEGLSNVSHLDEAERLELKNME 482 (677)
Q Consensus 404 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L-~~L~i~~~~~~~~~~~~~~~~l~~~~ 482 (677)
+++++++|.....+|..+++++.|+.+++.++... ...+..+..+..+ +.+.+... .+.......+..+.
T Consensus 128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~-----~~ip~~~~~l~~l~~~l~~~~n----~l~~~~~~~~~~l~ 198 (313)
T d1ogqa_ 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS-----GAIPDSYGSFSKLFTSMTISRN----RLTGKIPPTFANLN 198 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE-----EECCGGGGCCCTTCCEEECCSS----EEEEECCGGGGGCC
T ss_pred cccccccccccccCchhhccCcccceeeccccccc-----cccccccccccccccccccccc----cccccccccccccc
Confidence 99999999888888999999999999998877654 2344555566555 33444432 11111122233332
Q ss_pred ccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEE
Q 038430 483 NLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWI 562 (677)
Q Consensus 483 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 562 (677)
. ..+++..+.. .......+..+++|+.+++
T Consensus 199 ~-~~l~l~~~~~-------------------------------------------------~~~~~~~~~~~~~l~~l~~ 228 (313)
T d1ogqa_ 199 L-AFVDLSRNML-------------------------------------------------EGDASVLFGSDKNTQKIHL 228 (313)
T ss_dssp C-SEEECCSSEE-------------------------------------------------EECCGGGCCTTSCCSEEEC
T ss_pred c-cccccccccc-------------------------------------------------ccccccccccccccccccc
Confidence 2 2344443310 1112344566789999999
Q ss_pred ecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccce-EeCCccccCCCCCCCCCCCCCCCcc
Q 038430 563 LFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVK-RVGNEFLEIEESEDDPSSSSSSSSV 639 (677)
Q Consensus 563 ~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~-~i~~~~~~~~~~~~~~~~~~~~~~~ 639 (677)
.++.+...+..++.+++|+.|++++|.....+|. +++++ |++|+|++ ++++ .++. .
T Consensus 229 ~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~-N~l~g~iP~--------------------~ 287 (313)
T d1ogqa_ 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF-NNLCGEIPQ--------------------G 287 (313)
T ss_dssp CSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS-SEEEEECCC--------------------S
T ss_pred ccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcC-CcccccCCC--------------------c
Confidence 9998877777788999999999999955557885 99999 99999998 4454 3321 2
Q ss_pred cCCCccceeeeccccc
Q 038430 640 TAFPKVKSLEIKELEE 655 (677)
Q Consensus 640 ~~~~~L~~L~l~~~~~ 655 (677)
..+++|+.+.+.+++.
T Consensus 288 ~~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 288 GNLQRFDVSAYANNKC 303 (313)
T ss_dssp TTGGGSCGGGTCSSSE
T ss_pred ccCCCCCHHHhCCCcc
Confidence 4577888888877654
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=4.5e-16 Score=161.96 Aligned_cols=278 Identities=17% Similarity=0.213 Sum_probs=176.5
Q ss_pred CCCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcC
Q 038430 301 FGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQ 380 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~ 380 (677)
...+++.|++++|.+..+| .+.++++|++|++++| .+..++ .++.+++|+.|+++++.++.++.. .....+.
T Consensus 64 ~L~nL~~L~Ls~N~l~~l~-~l~~L~~L~~L~L~~n-----~i~~i~-~l~~l~~L~~L~~~~~~~~~~~~~-~~~~~~~ 135 (384)
T d2omza2 64 YLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNN-----QIADIT-PLANLTNLTGLTLFNNQITDIDPL-KNLTNLN 135 (384)
T ss_dssp GCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-----CCCCCG-GGTTCTTCCEEECCSSCCCCCGGG-TTCTTCS
T ss_pred cCCCCCEEeCcCCcCCCCc-cccCCccccccccccc-----cccccc-cccccccccccccccccccccccc-ccccccc
Confidence 3678999999999999988 5999999999999963 445554 388999999999999887755432 2233333
Q ss_pred EEEecCCC-----------------------------------------CccccCcccccccccceeecCccCCCcccCC
Q 038430 381 KLDIRGCR-----------------------------------------NLRELPTGIGKLKNMRSLLNGLTCSLKYMPI 419 (677)
Q Consensus 381 ~L~L~~~~-----------------------------------------~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~ 419 (677)
.+....+. .....+.....+++++.+++++|. +..++.
T Consensus 136 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~-i~~~~~ 214 (384)
T d2omza2 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ-ISDITP 214 (384)
T ss_dssp EEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCGG
T ss_pred ccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCc-cCCCCc
Confidence 33332211 001112235556777777777774 333332
Q ss_pred cCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCc
Q 038430 420 GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDE 499 (677)
Q Consensus 420 ~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 499 (677)
.+...+|++|++.++... .+..+..+++|+.+.+.+..- ... ..+..+++|+.|+++++......+
T Consensus 215 -~~~~~~L~~L~l~~n~l~-------~~~~l~~l~~L~~L~l~~n~l-~~~-----~~~~~~~~L~~L~l~~~~l~~~~~ 280 (384)
T d2omza2 215 -LGILTNLDELSLNGNQLK-------DIGTLASLTNLTDLDLANNQI-SNL-----APLSGLTKLTELKLGANQISNISP 280 (384)
T ss_dssp -GGGCTTCCEEECCSSCCC-------CCGGGGGCTTCSEEECCSSCC-CCC-----GGGTTCTTCSEEECCSSCCCCCGG
T ss_pred -ccccCCCCEEECCCCCCC-------CcchhhcccccchhccccCcc-CCC-----CcccccccCCEeeccCcccCCCCc
Confidence 455667777777665543 234566667777777766432 221 125667777777777652211000
Q ss_pred ccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccC
Q 038430 500 DWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTN 579 (677)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~ 579 (677)
+ .+......-....+. . ..+..+..+++++.|++++|.+..++ .+..+++
T Consensus 281 -~---------~~~~~l~~l~~~~n~----------------l---~~~~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~ 330 (384)
T d2omza2 281 -L---------AGLTALTNLELNENQ----------------L---EDISPISNLKNLTYLTLYFNNISDIS-PVSSLTK 330 (384)
T ss_dssp -G---------TTCTTCSEEECCSSC----------------C---SCCGGGGGCTTCSEEECCSSCCSCCG-GGGGCTT
T ss_pred -c---------ccccccccccccccc----------------c---ccccccchhcccCeEECCCCCCCCCc-ccccCCC
Confidence 0 000000000000000 0 01233556788999999999988886 4789999
Q ss_pred CCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeeccc
Q 038430 580 LSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKEL 653 (677)
Q Consensus 580 L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 653 (677)
|++|++++| .++.++.++.+| |++|++++ ++++.+.. ...+++|++|+|++.
T Consensus 331 L~~L~L~~n-~l~~l~~l~~l~~L~~L~l~~-N~l~~l~~--------------------l~~l~~L~~L~L~~N 383 (384)
T d2omza2 331 LQRLFFANN-KVSDVSSLANLTNINWLSAGH-NQISDLTP--------------------LANLTRITQLGLNDQ 383 (384)
T ss_dssp CCEEECCSS-CCCCCGGGGGCTTCCEEECCS-SCCCBCGG--------------------GTTCTTCSEEECCCE
T ss_pred CCEEECCCC-CCCCChhHcCCCCCCEEECCC-CcCCCChh--------------------hccCCCCCEeeCCCC
Confidence 999999999 778888899999 99999987 45665532 367899999999864
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.65 E-value=1.9e-15 Score=152.00 Aligned_cols=261 Identities=16% Similarity=0.163 Sum_probs=179.1
Q ss_pred cccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccch-hhccCCCcCEEEecCCCCccccCcccccccccce
Q 038430 327 RLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRS 405 (677)
Q Consensus 327 ~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 405 (677)
..++++-+ +..+..+|..+. +++++|+|++|.|+.+|+ .|.++++|++|++++|......|..+.++++|++
T Consensus 11 ~~~~~~C~-----~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~ 83 (305)
T d1xkua_ 11 HLRVVQCS-----DLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 83 (305)
T ss_dssp ETTEEECT-----TSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred cCCEEEec-----CCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCE
Confidence 45666555 456788898774 689999999999999987 5999999999999999944444667999999999
Q ss_pred eecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcccC
Q 038430 406 LLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLL 485 (677)
Q Consensus 406 L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~ 485 (677)
|++++| .+..+|..+ ...+..|....+.... .....+.....+..+...... ..........+..+++|+
T Consensus 84 L~l~~n-~l~~l~~~~--~~~l~~L~~~~n~l~~-----l~~~~~~~~~~~~~l~~~~n~--~~~~~~~~~~~~~l~~L~ 153 (305)
T d1xkua_ 84 LYLSKN-QLKELPEKM--PKTLQELRVHENEITK-----VRKSVFNGLNQMIVVELGTNP--LKSSGIENGAFQGMKKLS 153 (305)
T ss_dssp EECCSS-CCSBCCSSC--CTTCCEEECCSSCCCB-----BCHHHHTTCTTCCEEECCSSC--CCGGGBCTTGGGGCTTCC
T ss_pred ecccCC-ccCcCccch--hhhhhhhhccccchhh-----hhhhhhhcccccccccccccc--ccccCCCccccccccccC
Confidence 999999 577788654 3456677666555442 122223334444444443321 112222234466778888
Q ss_pred ceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecC
Q 038430 486 HLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFN 565 (677)
Q Consensus 486 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 565 (677)
.+.+..+.... +.. ..+++|++|++.+|
T Consensus 154 ~l~l~~n~l~~--------------------------------------------------l~~--~~~~~L~~L~l~~n 181 (305)
T d1xkua_ 154 YIRIADTNITT--------------------------------------------------IPQ--GLPPSLTELHLDGN 181 (305)
T ss_dssp EEECCSSCCCS--------------------------------------------------CCS--SCCTTCSEEECTTS
T ss_pred ccccccCCccc--------------------------------------------------cCc--ccCCccCEEECCCC
Confidence 88887761111 111 23578999999999
Q ss_pred CCCC-CChhHhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccC
Q 038430 566 GGNI-LPKWLTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTA 641 (677)
Q Consensus 566 ~~~~-lp~~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (677)
.... .|..+..++++++|++++| .+..++. +..++ |++|+|+++ .++.++.. ...
T Consensus 182 ~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~-------------------l~~ 240 (305)
T d1xkua_ 182 KITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKVPGG-------------------LAD 240 (305)
T ss_dssp CCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSSCCTT-------------------TTT
T ss_pred cCCCCChhHhhccccccccccccc-cccccccccccccccceeeecccc-cccccccc-------------------ccc
Confidence 8774 4566789999999999998 6666553 67889 999999995 57766443 257
Q ss_pred CCccceeeecccccCccccc---cCCccccCCCcccccC
Q 038430 642 FPKVKSLEIKELEEGNYRIT---RKENISIIPRLSSLRI 677 (677)
Q Consensus 642 ~~~L~~L~l~~~~~~~~~~~---~~~~~~~~p~L~~L~i 677 (677)
+++|+.|+++++.-+.++.. .......+++|+.|+|
T Consensus 241 l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L 279 (305)
T d1xkua_ 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 279 (305)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred ccCCCEEECCCCccCccChhhccCcchhcccCCCCEEEC
Confidence 89999999999754444321 1122335677777654
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=6.2e-16 Score=152.24 Aligned_cols=38 Identities=21% Similarity=-0.001 Sum_probs=27.6
Q ss_pred cCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCC
Q 038430 551 LQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFC 588 (677)
Q Consensus 551 l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c 588 (677)
+..+++|++|+|++|.+..+|..+..+++|+.|+|++|
T Consensus 168 ~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~N 205 (266)
T d1p9ag_ 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205 (266)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred cccccccceeecccCCCcccChhHCCCCCCCEEEecCC
Confidence 44566777777777777777777777777777777776
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.55 E-value=5.7e-15 Score=141.54 Aligned_cols=188 Identities=22% Similarity=0.185 Sum_probs=115.0
Q ss_pred cCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccc
Q 038430 323 HGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKN 402 (677)
Q Consensus 323 ~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~ 402 (677)
..+.+|+.|.+.+ +.+..+ +.+.++++|++|++++|.++.+++ +.++++|+++++++|. ++.++. +..+++
T Consensus 38 ~~l~~L~~L~l~~-----~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~-~~~i~~-l~~l~~ 108 (227)
T d1h6ua2 38 ADLDGITTLSAFG-----TGVTTI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSA-IAGLQS 108 (227)
T ss_dssp HHHHTCCEEECTT-----SCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGG-GTTCTT
T ss_pred HHcCCcCEEECCC-----CCCCcc-hhHhcCCCCcEeecCCceeecccc-cccccccccccccccc-cccccc-cccccc
Confidence 3455566666653 234444 245566666666666666665533 5666666666666655 444443 556666
Q ss_pred cceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCc
Q 038430 403 MRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNME 482 (677)
Q Consensus 403 L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 482 (677)
|+.+++++|... . ...+.....+..+.+..+.... ...+.+++
T Consensus 109 L~~l~l~~~~~~-~------------------------------~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~ 151 (227)
T d1h6ua2 109 IKTLDLTSTQIT-D------------------------------VTPLAGLSNLQVLYLDLNQITN------ISPLAGLT 151 (227)
T ss_dssp CCEEECTTSCCC-C------------------------------CGGGTTCTTCCEEECCSSCCCC------CGGGGGCT
T ss_pred cccccccccccc-c------------------------------cchhccccchhhhhchhhhhch------hhhhcccc
Confidence 666666655321 1 1112222223333332221111 11245567
Q ss_pred ccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEE
Q 038430 483 NLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWI 562 (677)
Q Consensus 483 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 562 (677)
+|+.|.++++.... ...+..+++|++|++
T Consensus 152 ~L~~L~l~~n~~~~---------------------------------------------------~~~l~~l~~L~~L~L 180 (227)
T d1h6ua2 152 NLQYLSIGNAQVSD---------------------------------------------------LTPLANLSKLTTLKA 180 (227)
T ss_dssp TCCEEECCSSCCCC---------------------------------------------------CGGGTTCTTCCEEEC
T ss_pred cccccccccccccc---------------------------------------------------chhhcccccceeccc
Confidence 78888887661111 123566789999999
Q ss_pred ecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccc
Q 038430 563 LFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCH 609 (677)
Q Consensus 563 ~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~ 609 (677)
++|.+..+| .++.+++|++|+|++| .++.++.++.++ |+.|++++
T Consensus 181 s~n~l~~l~-~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 181 DDNKISDIS-PLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTN 226 (227)
T ss_dssp CSSCCCCCG-GGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred CCCccCCCh-hhcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEeeC
Confidence 999988876 4889999999999999 788899899999 99999975
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=5e-15 Score=145.60 Aligned_cols=170 Identities=18% Similarity=0.092 Sum_probs=120.0
Q ss_pred eEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccchhhccCCCcCEEE
Q 038430 305 VRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLD 383 (677)
Q Consensus 305 l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~ 383 (677)
...++.+++++.++|..+. +++++|++++ +.+..+| ..|.++++|++|+|++|.|+.+|. ++.+++|++|+
T Consensus 12 ~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~-----N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~ 83 (266)
T d1p9ag_ 12 HLEVNCDKRNLTALPPDLP--KDTTILHLSE-----NLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLD 83 (266)
T ss_dssp CCEEECTTSCCSSCCSCCC--TTCCEEECTT-----SCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEE
T ss_pred CeEEEccCCCCCeeCcCcC--cCCCEEECcC-----CcCCCcCHHHhhcccccccccccccccccccc-ccccccccccc
Confidence 3345666667777776553 5788888884 4555665 457888888888888888887764 57788888888
Q ss_pred ecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 384 IRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 384 L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
|++|+ +...|..+..+++|+.|++++|......+..+..+.++++|.+..+.... .....+..+.+++.+.+++
T Consensus 84 Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~-----l~~~~~~~l~~l~~l~l~~ 157 (266)
T d1p9ag_ 84 LSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-----LPPGLLTPTPKLEKLSLAN 157 (266)
T ss_dssp CCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-----CCTTTTTTCTTCCEEECTT
T ss_pred ccccc-ccccccccccccccccccccccccceeeccccccccccccccccccccce-----eccccccccccchhccccc
Confidence 88887 77777778888888888888885444444556777888888877666542 2334455677777777776
Q ss_pred ccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 464 LSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
.. +.......+..+++|+.|+|++|
T Consensus 158 N~----l~~~~~~~~~~l~~L~~L~Ls~N 182 (266)
T d1p9ag_ 158 NN----LTELPAGLLNGLENLDTLLLQEN 182 (266)
T ss_dssp SC----CSCCCTTTTTTCTTCCEEECCSS
T ss_pred cc----ccccCccccccccccceeecccC
Confidence 32 22223344677899999999988
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=5.4e-14 Score=139.56 Aligned_cols=216 Identities=16% Similarity=0.171 Sum_probs=130.3
Q ss_pred EEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccch-hhccCCCcCEEEec
Q 038430 308 LGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIR 385 (677)
Q Consensus 308 L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~ 385 (677)
+...+.+..++|..+. +.+++|++++ +.+..+|. .|.++++|++|+++++.+..++. .+..+..++.++..
T Consensus 16 v~c~~~~L~~iP~~ip--~~~~~L~Ls~-----N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~ 88 (284)
T d1ozna_ 16 TSCPQQGLQAVPVGIP--AASQRIFLHG-----NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (284)
T ss_dssp EECCSSCCSSCCTTCC--TTCSEEECTT-----SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEcCCCCCCccCCCCC--CCCCEEECcC-----CcCCCCCHHHhhccccccccccccccccccccccccccccccccccc
Confidence 3445556667775443 5678888874 44566664 47778888888888888775544 35667778887776
Q ss_pred CCCCccccC-cccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCc
Q 038430 386 GCRNLRELP-TGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGL 464 (677)
Q Consensus 386 ~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~ 464 (677)
.+..+..++ ..+.++++|++|++++|......+..++.+.+|+.+++..+.... .....++.+.+|+.|.+.+.
T Consensus 89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~-----i~~~~f~~~~~L~~L~l~~N 163 (284)
T d1ozna_ 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-----LPDDTFRDLGNLTHLFLHGN 163 (284)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSS
T ss_pred cccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccc-----cChhHhccccchhhcccccC
Confidence 665566664 457778888888888875433334456667777777776665542 12233455556666665552
Q ss_pred cCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhH
Q 038430 465 SNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKD 544 (677)
Q Consensus 465 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (677)
.+.......+.++++|+.+.++.|....
T Consensus 164 ----~l~~l~~~~f~~l~~L~~l~l~~N~l~~------------------------------------------------ 191 (284)
T d1ozna_ 164 ----RISSVPERAFRGLHSLDRLLLHQNRVAH------------------------------------------------ 191 (284)
T ss_dssp ----CCCEECTTTTTTCTTCCEEECCSSCCCE------------------------------------------------
T ss_pred ----cccccchhhhccccccchhhhhhccccc------------------------------------------------
Confidence 1222222345556666666666551111
Q ss_pred HHHhhhcCCCCCCcEEEEecCCCCCCC-hhHhhccCCCeEEEeCC
Q 038430 545 EQLLEALQPPLNVEKLWILFNGGNILP-KWLTSLTNLSDLKLVFC 588 (677)
Q Consensus 545 ~~~~~~l~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~c 588 (677)
.....+..+++|+.|++++|.+..+| .++..+++|++|++++|
T Consensus 192 -i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N 235 (284)
T d1ozna_ 192 -VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (284)
T ss_dssp -ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred -cChhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence 01233445566777777777666554 34556677777777665
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=3.6e-14 Score=140.88 Aligned_cols=208 Identities=19% Similarity=0.210 Sum_probs=159.0
Q ss_pred CCCCccCCcccCCCCCcCEEEecCccccccch-hhccCCCcCEEEecCCCCccccCc-ccccccccceeecCccCCCccc
Q 038430 340 NSSLDKIPENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYM 417 (677)
Q Consensus 340 ~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~ 417 (677)
+..+..+|..+. ..+++|+|++|.|+.+|+ .|.++++|++|++++|. +..++. .+..+..++.+....+..+..+
T Consensus 20 ~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l~~~~~~~~~~l 96 (284)
T d1ozna_ 20 QQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSV 96 (284)
T ss_dssp SSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred CCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 445778887664 678999999999999886 59999999999999998 655554 5677889999988766667666
Q ss_pred -CCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCC
Q 038430 418 -PIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDR 496 (677)
Q Consensus 418 -p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 496 (677)
|..++++++|++|++..+... ......+..+.+|+.+.+.+.. +.......+..+++|+.|++++|....
T Consensus 97 ~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~l~l~~N~----l~~i~~~~f~~~~~L~~L~l~~N~l~~ 167 (284)
T d1ozna_ 97 DPATFHGLGRLHTLHLDRCGLQ-----ELGPGLFRGLAALQYLYLQDNA----LQALPDDTFRDLGNLTHLFLHGNRISS 167 (284)
T ss_dssp CTTTTTTCTTCCEEECTTSCCC-----CCCTTTTTTCTTCCEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred cchhhcccccCCEEecCCcccc-----cccccccchhcccchhhhcccc----ccccChhHhccccchhhcccccCcccc
Confidence 456899999999998877654 2344556677788888887632 222223446778999999999872211
Q ss_pred CCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCC-ChhHh
Q 038430 497 EDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNIL-PKWLT 575 (677)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~ 575 (677)
.....+..+++|+.+++.+|.+..+ |.++.
T Consensus 168 -------------------------------------------------l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~ 198 (284)
T d1ozna_ 168 -------------------------------------------------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198 (284)
T ss_dssp -------------------------------------------------ECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred -------------------------------------------------cchhhhccccccchhhhhhccccccChhHhh
Confidence 0123456678999999999998765 78888
Q ss_pred hccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccc
Q 038430 576 SLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCH 609 (677)
Q Consensus 576 ~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~ 609 (677)
.+++|++|++++| .+..++. ++.++ |++|++++
T Consensus 199 ~l~~L~~L~l~~N-~i~~~~~~~~~~~~~L~~L~l~~ 234 (284)
T d1ozna_ 199 DLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLND 234 (284)
T ss_dssp TCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCS
T ss_pred hhhhccccccccc-ccccccccccccccccCEEEecC
Confidence 9999999999998 5666664 78899 99999997
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.50 E-value=1e-13 Score=141.73 Aligned_cols=58 Identities=22% Similarity=0.222 Sum_probs=47.2
Q ss_pred CCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeC
Q 038430 553 PPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVG 617 (677)
Q Consensus 553 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~ 617 (677)
.+++|++|+|++|.+..+|.+ +++|+.|++++| .++.+|.. ++ |+.|++++|+ |+.++
T Consensus 282 ~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~L~~l~~~--~~~L~~L~L~~N~-L~~lp 340 (353)
T d1jl5a_ 282 LPPSLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPEL--PQNLKQLHVEYNP-LREFP 340 (353)
T ss_dssp CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSC-CSSCC
T ss_pred cCCCCCEEECCCCccCccccc---cCCCCEEECCCC-cCCccccc--cCCCCEEECcCCc-CCCCC
Confidence 367999999999999999864 689999999988 67788742 45 9999999865 77763
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.47 E-value=9.2e-14 Score=131.08 Aligned_cols=54 Identities=28% Similarity=0.244 Sum_probs=36.4
Q ss_pred CCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccc
Q 038430 554 PLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCH 609 (677)
Q Consensus 554 ~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~ 609 (677)
+++|+.+++++|.+..+++ +..+++|+.|++++| .++.+|.+..++ |++|+|++
T Consensus 155 l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 155 LTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFS 209 (210)
T ss_dssp CTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEE
T ss_pred ccccccccccccccccccc-ccCCCCCCEEECCCC-CCCCChhhcCCCCCCEEEccC
Confidence 4566667776766666553 567777777777776 566677677777 77777753
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.46 E-value=3.7e-14 Score=135.79 Aligned_cols=189 Identities=20% Similarity=0.220 Sum_probs=129.1
Q ss_pred cCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCc
Q 038430 350 VGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRT 429 (677)
Q Consensus 350 ~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 429 (677)
+..+.+|++|++.+|.|+.+ +.+..+++|++|++++|. +..+++ +..+++|+++++++|. .+.++ .+.+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~-i~~~~~-l~~l~~l~~l~~~~n~-~~~i~-~l~~l~---- 107 (227)
T d1h6ua2 37 QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQ---- 107 (227)
T ss_dssp HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCT----
T ss_pred HHHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCce-eecccc-cccccccccccccccc-ccccc-cccccc----
Confidence 35567778888888877777 357778888888888776 555554 6777777777777763 33332 233333
Q ss_pred cCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCccccccccccc
Q 038430 430 LDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENED 509 (677)
Q Consensus 430 L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 509 (677)
+|+.+.+..+..... ..+...+.+..+.++.+....
T Consensus 108 -------------------------~L~~l~l~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~------------- 143 (227)
T d1h6ua2 108 -------------------------SIKTLDLTSTQITDV------TPLAGLSNLQVLYLDLNQITN------------- 143 (227)
T ss_dssp -------------------------TCCEEECTTSCCCCC------GGGTTCTTCCEEECCSSCCCC-------------
T ss_pred -------------------------ccccccccccccccc------chhccccchhhhhchhhhhch-------------
Confidence 344444443322111 124445677777776551111
Q ss_pred CCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCC
Q 038430 510 EGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCE 589 (677)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~ 589 (677)
...+..+++|+.|++.+|.+...+ .++++++|+.|++++|
T Consensus 144 --------------------------------------~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n- 183 (227)
T d1h6ua2 144 --------------------------------------ISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDN- 183 (227)
T ss_dssp --------------------------------------CGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-
T ss_pred --------------------------------------hhhhccccccccccccccccccch-hhcccccceecccCCC-
Confidence 112345678999999999877665 4789999999999999
Q ss_pred CCCcCCCCCCcc-cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeecc
Q 038430 590 NCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKE 652 (677)
Q Consensus 590 ~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 652 (677)
.++.++.++.+| |++|++++| +++.++. ...+++|+.|++++
T Consensus 184 ~l~~l~~l~~l~~L~~L~Ls~N-~lt~i~~--------------------l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 184 KISDISPLASLPNLIEVHLKNN-QISDVSP--------------------LANTSNLFIVTLTN 226 (227)
T ss_dssp CCCCCGGGGGCTTCCEEECTTS-CCCBCGG--------------------GTTCTTCCEEEEEE
T ss_pred ccCCChhhcCCCCCCEEECcCC-cCCCCcc--------------------cccCCCCCEEEeeC
Confidence 788899899999 999999996 5777642 26789999999875
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.44 E-value=3.1e-13 Score=126.27 Aligned_cols=52 Identities=27% Similarity=0.266 Sum_probs=33.7
Q ss_pred CCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-ccee
Q 038430 552 QPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKL 605 (677)
Q Consensus 552 ~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L 605 (677)
..+++|+.|++.+|.+..++. ++.+++|++|++++| .++.++.+++++ |+.|
T Consensus 147 ~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N-~i~~i~~l~~L~~L~~L 199 (199)
T d2omxa2 147 SGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSN-KVSDISVLAKLTNLESL 199 (199)
T ss_dssp TTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEE
T ss_pred cccccccccccccccccCCcc-ccCCCCCCEEECCCC-CCCCCccccCCCCCCcC
Confidence 345666667776666666553 567777777777777 466666666666 6654
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=8.4e-13 Score=127.45 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=44.2
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccc-cch-hhccCCCcCEEE
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIER-LPK-TLCELYNLQKLD 383 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~-lp~-~i~~l~~L~~L~ 383 (677)
.+...+.++.++|..+. +++++|++++ +.+..+|. .|.++++|++|++++|.+.. +|. .+.++++++++.
T Consensus 12 ~i~c~~~~l~~iP~~l~--~~l~~L~Ls~-----n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~ 84 (242)
T d1xwdc1 12 VFLCQESKVTEIPSDLP--RNAIELRFVL-----TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 84 (242)
T ss_dssp EEEEESCSCSSCCSCSC--SCCSEEEEES-----CCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEE
T ss_pred EEEEeCCCCCCcCCCCC--CCCCEEECcC-----CcCCccChhHhhccchhhhhhhccccccceeecccccccccccccc
Confidence 34444444445553332 3455555552 23344443 24455555555555555432 222 244555555555
Q ss_pred ecCCCCccccC-cccccccccceeecCcc
Q 038430 384 IRGCRNLRELP-TGIGKLKNMRSLLNGLT 411 (677)
Q Consensus 384 L~~~~~l~~lp-~~i~~l~~L~~L~l~~~ 411 (677)
+..+..+..++ ..+..+++|++|++++|
T Consensus 85 ~~~~n~l~~~~~~~~~~l~~L~~l~l~~~ 113 (242)
T d1xwdc1 85 IEKANNLLYINPEAFQNLPNLQYLLISNT 113 (242)
T ss_dssp EECCTTCCEECTTSEECCTTCCEEEEESC
T ss_pred ccccccccccccccccccccccccccchh
Confidence 54433333332 23445555555555554
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.2e-13 Score=136.76 Aligned_cols=203 Identities=14% Similarity=0.082 Sum_probs=116.5
Q ss_pred cCEEEecCccccccchhhccCCCcCEEEecCCCCc-cccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCcee
Q 038430 356 LKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNL-RELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFA 434 (677)
Q Consensus 356 L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 434 (677)
+..+.++.+.+...........+|++||+++|... ..++..+..+++|++|++++|......+..++++++|++|++.+
T Consensus 25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~ 104 (284)
T d2astb2 25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 104 (284)
T ss_dssp CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence 45556665554433233445668899999988632 22455577888999999998854444555677778888888776
Q ss_pred eCCCcCCCCcccccc-cccCCcCCcccccCccCCCChhHHHHhhc-cCCcccCceEEEeecCCCCCcccccccccccCCC
Q 038430 435 VGGGVDGGSTCRLEC-LKNFQLIRKCGIEGLSNVSHLDEAERLEL-KNMENLLHLYLWFEVVDREDEDWEDEEENEDEGG 512 (677)
Q Consensus 435 ~~~~~~~~~~~~~~~-L~~l~~L~~L~i~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 512 (677)
+...+ ...+.. ...+++|+.|+++++..+... .....+ ..+++|+.|+++++.
T Consensus 105 c~~it----d~~l~~l~~~~~~L~~L~ls~c~~~~~~--~~~~~~~~~~~~L~~L~l~~~~------------------- 159 (284)
T d2astb2 105 CSGFS----EFALQTLLSSCSRLDELNLSWCFDFTEK--HVQVAVAHVSETITQLNLSGYR------------------- 159 (284)
T ss_dssp CBSCC----HHHHHHHHHHCTTCCEEECCCCTTCCHH--HHHHHHHHSCTTCCEEECCSCG-------------------
T ss_pred ccccc----ccccchhhHHHHhccccccccccccccc--cchhhhcccccccchhhhcccc-------------------
Confidence 53322 222222 345677777777776544321 111112 224667777776540
Q ss_pred CCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCC--CCChhHhhccCCCeEEEeCCCC
Q 038430 513 EDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGN--ILPKWLTSLTNLSDLKLVFCEN 590 (677)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~c~~ 590 (677)
.......+......+++|++|++++|... ..+..+..+++|++|++++|..
T Consensus 160 ---------------------------~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~ 212 (284)
T d2astb2 160 ---------------------------KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 212 (284)
T ss_dssp ---------------------------GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred ---------------------------cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCC
Confidence 00112222222233567777777765432 2344556677777777777765
Q ss_pred CC--cCCCCCCcc-cceeecccc
Q 038430 591 CE--QLPPLGKLP-LEKLELCHL 610 (677)
Q Consensus 591 ~~--~l~~l~~l~-L~~L~l~~~ 610 (677)
+. .+..++++| |+.|++.+|
T Consensus 213 i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 213 IIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS
T ss_pred CChHHHHHHhcCCCCCEEeeeCC
Confidence 53 233456677 777777765
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.35 E-value=1.4e-11 Score=125.48 Aligned_cols=134 Identities=20% Similarity=0.189 Sum_probs=94.6
Q ss_pred CceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEE
Q 038430 303 GKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKL 382 (677)
Q Consensus 303 ~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L 382 (677)
.++++|+++++++.++|.. .++|++|+++ ++.+..+|+.+ .+|+.|++++|.++.++.- .+.|++|
T Consensus 38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls-----~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L 103 (353)
T d1jl5a_ 38 RQAHELELNNLGLSSLPEL---PPHLESLVAS-----CNSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYL 103 (353)
T ss_dssp HTCSEEECTTSCCSCCCSC---CTTCSEEECC-----SSCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEE
T ss_pred cCCCEEEeCCCCCCCCCCC---CCCCCEEECC-----CCCCcccccch---hhhhhhhhhhcccchhhhh---ccccccc
Confidence 3577899999999999853 5689999998 45677888654 5789999999998877531 2469999
Q ss_pred EecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccccc
Q 038430 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIE 462 (677)
Q Consensus 383 ~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~ 462 (677)
++++|. +..+|. ++.+++|++|++++|. ....|.....+ ..+.+..... .....+..+..++.+.+.
T Consensus 104 ~L~~n~-l~~lp~-~~~l~~L~~L~l~~~~-~~~~~~~~~~l---~~l~~~~~~~-------~~~~~l~~l~~l~~L~l~ 170 (353)
T d1jl5a_ 104 GVSNNQ-LEKLPE-LQNSSFLKIIDVDNNS-LKKLPDLPPSL---EFIAAGNNQL-------EELPELQNLPFLTAIYAD 170 (353)
T ss_dssp ECCSSC-CSSCCC-CTTCTTCCEEECCSSC-CSCCCCCCTTC---CEEECCSSCC-------SSCCCCTTCTTCCEEECC
T ss_pred cccccc-cccccc-hhhhccceeecccccc-ccccccccccc---cchhhccccc-------cccccccccccceecccc
Confidence 999998 888986 7889999999999884 45555544333 3333322221 123345556666666655
Q ss_pred C
Q 038430 463 G 463 (677)
Q Consensus 463 ~ 463 (677)
+
T Consensus 171 ~ 171 (353)
T d1jl5a_ 171 N 171 (353)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.32 E-value=3.9e-12 Score=119.67 Aligned_cols=164 Identities=21% Similarity=0.245 Sum_probs=130.4
Q ss_pred CceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEE
Q 038430 303 GKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKL 382 (677)
Q Consensus 303 ~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L 382 (677)
..++.|.+.++.+..++ .+..+++|++|++++ +.+..++ .++.+++|++|++++|.++.+| .+.++++|+.|
T Consensus 46 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~-----n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L 117 (210)
T d1h6ta2 46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNG-----NKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSL 117 (210)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCS-----SCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEE
T ss_pred cCccEEECcCCCCCCch-hHhhCCCCCEEeCCC-----ccccCcc-ccccCccccccccccccccccc-ccccccccccc
Confidence 36788899999888776 478899999999996 3455565 4788999999999999999887 58899999999
Q ss_pred EecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccccc
Q 038430 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIE 462 (677)
Q Consensus 383 ~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~ 462 (677)
++++|. ...++. +..+++|+.+++++|. +... ..+.++++|+++++.++... .+..+.++++|+.|+++
T Consensus 118 ~l~~~~-~~~~~~-l~~l~~l~~l~~~~n~-l~~~-~~~~~l~~L~~l~l~~n~l~-------~i~~l~~l~~L~~L~Ls 186 (210)
T d1h6ta2 118 SLEHNG-ISDING-LVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQIS-------DIVPLAGLTKLQNLYLS 186 (210)
T ss_dssp ECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCC-------CCGGGTTCTTCCEEECC
T ss_pred cccccc-cccccc-cccccccccccccccc-cccc-cccccccccccccccccccc-------ccccccCCCCCCEEECC
Confidence 999988 666654 8889999999999984 4443 34678889999988877654 34458889999999998
Q ss_pred CccCCCChhHHHHhhccCCcccCceEEEe
Q 038430 463 GLSNVSHLDEAERLELKNMENLLHLYLWF 491 (677)
Q Consensus 463 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 491 (677)
+.. +..+ ..+.++++|+.|+|+.
T Consensus 187 ~N~-i~~l-----~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 187 KNH-ISDL-----RALAGLKNLDVLELFS 209 (210)
T ss_dssp SSC-CCBC-----GGGTTCTTCSEEEEEE
T ss_pred CCC-CCCC-----hhhcCCCCCCEEEccC
Confidence 753 3332 2478899999999974
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.31 E-value=6e-12 Score=117.28 Aligned_cols=161 Identities=22% Similarity=0.267 Sum_probs=125.5
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+++.|++.++++.++. .+..+++|++|++++ +.+..++. ++++++|++|++++|.+..+| .++++++|+.
T Consensus 39 l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~-----N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~ 110 (199)
T d2omxa2 39 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSN-----NQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTG 110 (199)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCS-----SCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred hcCCCEEECCCCCCCCcc-ccccCCCcCcCcccc-----ccccCccc-ccCCccccccccccccccccc-cccccccccc
Confidence 357889999999988875 578899999999996 34555554 889999999999999988886 4889999999
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++++|. ...++ .+..+++|+.|++++|. +..+| .+..+.+|+.|++.++... .+..++++++|+.|.+
T Consensus 111 L~l~~~~-~~~~~-~~~~l~~L~~L~l~~n~-l~~~~-~l~~~~~L~~L~l~~n~l~-------~l~~l~~l~~L~~L~l 179 (199)
T d2omxa2 111 LTLFNNQ-ITDID-PLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLNFSSNQVT-------DLKPLANLTTLERLDI 179 (199)
T ss_dssp EECCSSC-CCCCG-GGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSCCC-------CCGGGTTCTTCCEEEC
T ss_pred ccccccc-ccccc-ccchhhhhHHhhhhhhh-hcccc-ccccccccccccccccccc-------CCccccCCCCCCEEEC
Confidence 9999887 55554 38889999999999984 55554 5788899999998877654 3456888899999999
Q ss_pred cCccCCCChhHHHHhhccCCcccCce
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHL 487 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L 487 (677)
++.. +..++ .+.++++|+.|
T Consensus 180 s~N~-i~~i~-----~l~~L~~L~~L 199 (199)
T d2omxa2 180 SSNK-VSDIS-----VLAKLTNLESL 199 (199)
T ss_dssp CSSC-CCCCG-----GGGGCTTCSEE
T ss_pred CCCC-CCCCc-----cccCCCCCCcC
Confidence 8853 34332 25667777765
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.9e-12 Score=127.99 Aligned_cols=186 Identities=16% Similarity=0.081 Sum_probs=125.4
Q ss_pred cCCCCCcCEEEecCcccc--ccchhhccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcc--cCCcCCCCC
Q 038430 350 VGKLMHLKYLNLSELHIE--RLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKY--MPIGISKLT 425 (677)
Q Consensus 350 ~~~l~~L~~L~Ls~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~--~p~~i~~l~ 425 (677)
......|++||+++|.++ .++..+..+++|++|++++|......+..++++++|++|++++|..++. +..-...++
T Consensus 42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~ 121 (284)
T d2astb2 42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121 (284)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence 345568999999998876 3555678889999999999874445666788889999999999865543 122234678
Q ss_pred CCCccCceeeCCCcCCCCccccccccc-CCcCCcccccCccC-CCChhHHHHhhccCCcccCceEEEeecCCCCCccccc
Q 038430 426 SLRTLDKFAVGGGVDGGSTCRLECLKN-FQLIRKCGIEGLSN-VSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWED 503 (677)
Q Consensus 426 ~L~~L~l~~~~~~~~~~~~~~~~~L~~-l~~L~~L~i~~~~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 503 (677)
+|++|++.++..... ......+.. .++|+.|.+.++.. +.. .........+++|++|+++.|...+
T Consensus 122 ~L~~L~ls~c~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~i~~--~~l~~l~~~~~~L~~L~L~~~~~it------- 189 (284)
T d2astb2 122 RLDELNLSWCFDFTE---KHVQVAVAHVSETITQLNLSGYRKNLQK--SDLSTLVRRCPNLVHLDLSDSVMLK------- 189 (284)
T ss_dssp TCCEEECCCCTTCCH---HHHHHHHHHSCTTCCEEECCSCGGGSCH--HHHHHHHHHCTTCSEEECTTCTTCC-------
T ss_pred hcccccccccccccc---ccchhhhcccccccchhhhccccccccc--ccccccccccccccccccccccCCC-------
Confidence 899998877643220 111122333 35788898887532 222 2223334668999999998762111
Q ss_pred ccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCC--CCChhHhhccCCC
Q 038430 504 EEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGN--ILPKWLTSLTNLS 581 (677)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~lp~~~~~l~~L~ 581 (677)
+..+..+..+++|++|++++|... .-...++.+++|+
T Consensus 190 -----------------------------------------d~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~ 228 (284)
T d2astb2 190 -----------------------------------------NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 228 (284)
T ss_dssp -----------------------------------------GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred -----------------------------------------chhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCC
Confidence 223445566889999999997532 1233466899999
Q ss_pred eEEEeCC
Q 038430 582 DLKLVFC 588 (677)
Q Consensus 582 ~L~l~~c 588 (677)
.|++.+|
T Consensus 229 ~L~l~~~ 235 (284)
T d2astb2 229 TLQVFGI 235 (284)
T ss_dssp EEECTTS
T ss_pred EEeeeCC
Confidence 9999998
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=8.2e-12 Score=120.30 Aligned_cols=216 Identities=16% Similarity=0.155 Sum_probs=135.9
Q ss_pred cEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccch-hhccCCCcCEEEecCCCCccccCc-cccccccccee
Q 038430 329 RTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELPT-GIGKLKNMRSL 406 (677)
Q Consensus 329 ~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L 406 (677)
++++.+ +..+..+|..+. .++++|++++|.|+.+|. .|.++++|++|++++|.....+|. .+..+++++++
T Consensus 11 ~~i~c~-----~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l 83 (242)
T d1xwdc1 11 RVFLCQ-----ESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 83 (242)
T ss_dssp SEEEEE-----SCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEE
T ss_pred CEEEEe-----CCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccc
Confidence 566665 345667887653 579999999999998877 488999999999999985565554 57889999999
Q ss_pred ecCccCCCcccC-CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCC-ccc
Q 038430 407 LNGLTCSLKYMP-IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNM-ENL 484 (677)
Q Consensus 407 ~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~-~~L 484 (677)
.+..+..+..++ ..+..+++|+.|++.++.... ......+..+..+..+.... ..+. ......+.++ ..+
T Consensus 84 ~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~----~~~~~~~~~l~~l~~~~~~n-~~l~---~i~~~~~~~~~~~l 155 (242)
T d1xwdc1 84 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH----LPDVHKIHSLQKVLLDIQDN-INIH---TIERNSFVGLSFES 155 (242)
T ss_dssp EEECCTTCCEECTTSEECCTTCCEEEEESCCCCS----CCCCTTTCBSSCEEEEEESC-TTCC---EECTTSSTTSBSSC
T ss_pred cccccccccccccccccccccccccccchhhhcc----cccccccccccccccccccc-cccc---cccccccccccccc
Confidence 887654555554 457889999999988776543 11222233333333222221 1111 1111223333 356
Q ss_pred CceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEE-Ee
Q 038430 485 LHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLW-IL 563 (677)
Q Consensus 485 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~-l~ 563 (677)
..|++..+... .+.......++++++. +.
T Consensus 156 ~~L~l~~n~l~--------------------------------------------------~i~~~~~~~~~l~~~~~l~ 185 (242)
T d1xwdc1 156 VILWLNKNGIQ--------------------------------------------------EIHNCAFNGTQLDELNLSD 185 (242)
T ss_dssp EEEECCSSCCC--------------------------------------------------EECTTTTTTCCEEEEECTT
T ss_pred eeeeccccccc--------------------------------------------------ccccccccchhhhcccccc
Confidence 66666554110 0111122234555554 56
Q ss_pred cCCCCCCChh-HhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeecccc
Q 038430 564 FNGGNILPKW-LTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHL 610 (677)
Q Consensus 564 ~~~~~~lp~~-~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~ 610 (677)
+|.+..+|.+ +..+++|++|+|++| .++.+|. +..++ |+.|++.++
T Consensus 186 ~n~l~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~l~~~~l 235 (242)
T d1xwdc1 186 NNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNL 235 (242)
T ss_dssp CTTCCCCCTTTTTTSCCCSEEECTTS-CCCCCCSSSCTTCCEEESSSEESS
T ss_pred ccccccccHHHhcCCCCCCEEECCCC-cCCccCHHHHcCCcccccCcCCCC
Confidence 6778888876 568999999999988 5777775 66777 777776653
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=1.1e-11 Score=110.95 Aligned_cols=125 Identities=21% Similarity=0.132 Sum_probs=87.7
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchh-hccCCCcC
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKT-LCELYNLQ 380 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~L~ 380 (677)
+.+++.|++++|.+..++..+..+++|++|++++ +.+..++ .+..+++|++|++++|.++.+|+. +..+++|+
T Consensus 17 ~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~-----N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSD-----NEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCS-----SCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCcCcEEECCCCCCCccCccccccccCCEEECCC-----CCCCccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence 4467888888888887776667778888888885 3455553 467788888888888888877665 45688888
Q ss_pred EEEecCCCCccccCc--ccccccccceeecCccCCCcccCC----cCCCCCCCCccCcee
Q 038430 381 KLDIRGCRNLRELPT--GIGKLKNMRSLLNGLTCSLKYMPI----GISKLTSLRTLDKFA 434 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~l~~ 434 (677)
+|++++|. +..++. .+..+++|++|++++|. +...|. .+..+++|+.|+...
T Consensus 91 ~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~~ 148 (162)
T d1a9na_ 91 ELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQK 148 (162)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred cceecccc-ccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCCC
Confidence 88888877 666653 46777888888888873 444443 255566666666543
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.19 E-value=1.6e-11 Score=104.43 Aligned_cols=98 Identities=19% Similarity=0.170 Sum_probs=62.4
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecC
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRG 386 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~ 386 (677)
.|++++|.+..++ .+..+++|++|++++ +.+..+|+.++.+++|+.|++++|.|+.+| +++++++|++|++++
T Consensus 2 ~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~-----N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~ 74 (124)
T d1dcea3 2 VLHLAHKDLTVLC-HLEQLLLVTHLDLSH-----NRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 74 (124)
T ss_dssp EEECTTSCCSSCC-CGGGGTTCCEEECCS-----SCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred EEEcCCCCCCCCc-ccccCCCCCEEECCC-----CccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCC
Confidence 4666666666665 356666677777663 445556666666677777777777766664 366667777777776
Q ss_pred CCCccccCc--ccccccccceeecCccC
Q 038430 387 CRNLRELPT--GIGKLKNMRSLLNGLTC 412 (677)
Q Consensus 387 ~~~l~~lp~--~i~~l~~L~~L~l~~~~ 412 (677)
|+ +..+|. .++.+++|++|++++|.
T Consensus 75 N~-i~~~~~~~~l~~~~~L~~L~l~~N~ 101 (124)
T d1dcea3 75 NR-LQQSAAIQPLVSCPRLVLLNLQGNS 101 (124)
T ss_dssp SC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred Cc-cCCCCCchhhcCCCCCCEEECCCCc
Confidence 66 555542 45666667777776663
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.17 E-value=2.3e-11 Score=103.39 Aligned_cols=101 Identities=20% Similarity=0.226 Sum_probs=80.5
Q ss_pred cEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccceeec
Q 038430 329 RTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLN 408 (677)
Q Consensus 329 ~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l 408 (677)
|+|++++ +.+..++ .++.+.+|++|++++|.++.+|+.++.+++|++|++++|. +..+|. ++.+++|++|++
T Consensus 1 R~L~Ls~-----n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~~-~~~l~~L~~L~l 72 (124)
T d1dcea3 1 RVLHLAH-----KDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVDG-VANLPRLQELLL 72 (124)
T ss_dssp SEEECTT-----SCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEEC
T ss_pred CEEEcCC-----CCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccc-ccccCc-cccccccCeEEC
Confidence 5788885 4556665 4788999999999999999998889999999999999988 888875 889999999999
Q ss_pred CccCCCcccC--CcCCCCCCCCccCceeeCCC
Q 038430 409 GLTCSLKYMP--IGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 409 ~~~~~~~~~p--~~i~~l~~L~~L~l~~~~~~ 438 (677)
++| .+..+| ..++.+++|++|++.++...
T Consensus 73 ~~N-~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 73 CNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CSS-CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCC-ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 998 455555 34677778888877665543
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=3.9e-11 Score=107.23 Aligned_cols=109 Identities=18% Similarity=0.143 Sum_probs=72.7
Q ss_pred cccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcc-ccc
Q 038430 321 SIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTG-IGK 399 (677)
Q Consensus 321 ~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~ 399 (677)
.+.++.++|.|++++ +.+..+|..+..+.+|++|++++|.|+.++ .+..+++|++|++++|. +..+|.. +..
T Consensus 13 ~~~n~~~lr~L~L~~-----n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~ 85 (162)
T d1a9na_ 13 QYTNAVRDRELDLRG-----YKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQA 85 (162)
T ss_dssp EEECTTSCEEEECTT-----SCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSC-CCEECSCHHHH
T ss_pred hccCcCcCcEEECCC-----CCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccccc-ccCCCcccccc
Confidence 455667788888874 455666654566778888888888877774 47777888888888877 6666654 356
Q ss_pred ccccceeecCccCCCcccCC--cCCCCCCCCccCceeeCC
Q 038430 400 LKNMRSLLNGLTCSLKYMPI--GISKLTSLRTLDKFAVGG 437 (677)
Q Consensus 400 l~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~l~~~~~ 437 (677)
+++|++|++++|. +..++. .+..+++|++|++.++..
T Consensus 86 l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i 124 (162)
T d1a9na_ 86 LPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV 124 (162)
T ss_dssp CTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred ccccccceecccc-ccccccccccccccccchhhcCCCcc
Confidence 7788888888773 444432 355556666666555443
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.96 E-value=1e-09 Score=101.09 Aligned_cols=122 Identities=18% Similarity=0.196 Sum_probs=84.1
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCc-cC-CcccCCCCCcCEEEecCccccccc-hhhccCCCcCEEE
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLD-KI-PENVGKLMHLKYLNLSELHIERLP-KTLCELYNLQKLD 383 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~-~l-p~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~ 383 (677)
.++.+++++.++|..+. +++++|++++ +.+. .+ +..|+.+++|+.|++++|.+..++ ..+..+++|++|+
T Consensus 12 ~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~-----N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~ 84 (192)
T d1w8aa_ 12 TVDCTGRGLKEIPRDIP--LHTTELLLND-----NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCS-----CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred EEEEeCCCcCccCCCCC--CCCCEEEeCC-----CCCcccccccccCCCceEeeeeccccccccccccccccccccceee
Confidence 45666667777776553 5788888885 3332 23 234677888888888888877554 4577788888888
Q ss_pred ecCCCCccccCc-ccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeCC
Q 038430 384 IRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGG 437 (677)
Q Consensus 384 L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~ 437 (677)
|++|+ +..+|+ .|.++++|++|++++|. +..+| ..+..+.+|++|++.++..
T Consensus 85 Ls~N~-l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~ 138 (192)
T d1w8aa_ 85 LGENK-IKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCSCC-CCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCB
T ss_pred ecccc-ccccCHHHHhCCCcccccccCCcc-ccccCHHHhcCCccccccccccccc
Confidence 88887 666654 46778888888888884 55554 4467777888877766544
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.91 E-value=2.5e-11 Score=112.50 Aligned_cols=112 Identities=19% Similarity=0.210 Sum_probs=58.4
Q ss_pred CCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccC
Q 038430 315 GASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELP 394 (677)
Q Consensus 315 ~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp 394 (677)
+..++.++..+++|++|++++ +.+..++ .+..+++|++|++++|.|+.+|.....+++|++|++++|. +..++
T Consensus 37 i~~l~~sl~~L~~L~~L~Ls~-----n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~-i~~l~ 109 (198)
T d1m9la_ 37 IEKMDATLSTLKACKHLALST-----NNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS 109 (198)
T ss_dssp CCCCHHHHHHTTTCCEEECSE-----EEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEE-CCCHH
T ss_pred hhhhhhHHhcccccceeECcc-----cCCCCcc-cccCCccccChhhccccccccccccccccccccccccccc-ccccc
Confidence 344445555566666666653 2333443 3555566666666666665555444444556666666554 44443
Q ss_pred cccccccccceeecCccCCCcccC--CcCCCCCCCCccCceee
Q 038430 395 TGIGKLKNMRSLLNGLTCSLKYMP--IGISKLTSLRTLDKFAV 435 (677)
Q Consensus 395 ~~i~~l~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~l~~~ 435 (677)
. +..+++|++|++++| .+..++ ..+..+++|+.|++.++
T Consensus 110 ~-~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N 150 (198)
T d1m9la_ 110 G-IEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp H-HHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred c-ccccccccccccccc-hhccccccccccCCCccceeecCCC
Confidence 2 555566666666655 233332 23445555555554443
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.90 E-value=1.6e-09 Score=99.78 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=91.1
Q ss_pred cCCCceEEEEEEecCCCc-c-cccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccch-hhccC
Q 038430 300 AFGGKVRHLGLKFKGGAS-F-PMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPK-TLCEL 376 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~-~-p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l 376 (677)
.++..+++|++++|.+.. + +..|..+++|+.|++++ +......+..+..+++|++|+|++|+++.+|+ .|.++
T Consensus 26 ~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~----N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l 101 (192)
T d1w8aa_ 26 DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR----NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL 101 (192)
T ss_dssp CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS----SCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTC
T ss_pred CCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccc----cccccccccccccccccceeeeccccccccCHHHHhCC
Confidence 346789999999999965 4 36778999999999996 33333345668899999999999999998866 48999
Q ss_pred CCcCEEEecCCCCccccCc-ccccccccceeecCccCC
Q 038430 377 YNLQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCS 413 (677)
Q Consensus 377 ~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 413 (677)
++|++|+|++|. +..+|+ .+..+++|++|++++|..
T Consensus 102 ~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~ 138 (192)
T d1w8aa_ 102 HQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CcccccccCCcc-ccccCHHHhcCCccccccccccccc
Confidence 999999999998 777765 578999999999999953
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.86 E-value=8.1e-12 Score=115.92 Aligned_cols=140 Identities=19% Similarity=0.186 Sum_probs=104.9
Q ss_pred CCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcC
Q 038430 342 SLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGI 421 (677)
Q Consensus 342 ~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i 421 (677)
.+..+|.++..+++|++|+|++|.|+.++ .+.++++|++|++++|. +..+|.....+++|++|++++| .+..++ .+
T Consensus 36 ~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N-~i~~l~-~~ 111 (198)
T d1m9la_ 36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASLS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEE-ECCCHH-HH
T ss_pred chhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccc-cccccccccccccccccccccc-cccccc-cc
Confidence 45667778889999999999999999885 58899999999999997 8888876667788999999998 455554 47
Q ss_pred CCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccC------CCChhHHHHhhccCCcccCceEE
Q 038430 422 SKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSN------VSHLDEAERLELKNMENLLHLYL 489 (677)
Q Consensus 422 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~------~~~~~~~~~~~l~~~~~L~~L~l 489 (677)
..+++|++|++.++.... ...+..++.+++|+.|.+++..- ...........+..+++|+.|+-
T Consensus 112 ~~l~~L~~L~L~~N~i~~----~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~ 181 (198)
T d1m9la_ 112 EKLVNLRVLYMSNNKITN----WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HHHHHSSEEEESEEECCC----HHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESS
T ss_pred cccccccccccccchhcc----ccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCC
Confidence 788899999998887653 23456788899999999887421 11111112223566788888763
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=1.4e-08 Score=89.61 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=71.7
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccch-hhccCCCcCEEEe
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDI 384 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L 384 (677)
.+...+++...+|..+..+++|+.|++.+ ++.+..++. .|.++++|+.|++++|+|+.+++ .|..+++|++|+|
T Consensus 12 ~l~c~~~~~~~~p~~l~~l~~l~~L~l~~----n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 87 (156)
T d2ifga3 12 GLRCTRDGALDSLHHLPGAENLTELYIEN----QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (156)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCS----CSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred eEEecCCCCccCcccccCccccCeeecCC----CccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence 35556666666777777777888888765 445666653 46778888888888888877644 4777888888888
Q ss_pred cCCCCccccCcccccccccceeecCccC
Q 038430 385 RGCRNLRELPTGIGKLKNMRSLLNGLTC 412 (677)
Q Consensus 385 ~~~~~l~~lp~~i~~l~~L~~L~l~~~~ 412 (677)
++|+ ++.+|..+....+|++|++++|.
T Consensus 88 s~N~-l~~l~~~~~~~~~l~~L~L~~Np 114 (156)
T d2ifga3 88 SFNA-LESLSWKTVQGLSLQELVLSGNP 114 (156)
T ss_dssp CSSC-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred cCCC-CcccChhhhccccccccccCCCc
Confidence 8877 77777765555577888887774
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.64 E-value=1e-09 Score=111.24 Aligned_cols=86 Identities=16% Similarity=0.072 Sum_probs=44.0
Q ss_pred CceEEEEEEecCCC-----cccccccCCCcccEEEeCCCCCCCCC------CccCCcccCCCCCcCEEEecCccccc---
Q 038430 303 GKVRHLGLKFKGGA-----SFPMSIHGLNRLRTLLIDDESPPNSS------LDKIPENVGKLMHLKYLNLSELHIER--- 368 (677)
Q Consensus 303 ~~l~~L~l~~~~~~-----~~p~~~~~l~~L~~L~l~~~~l~~~~------~~~lp~~~~~l~~L~~L~Ls~~~i~~--- 368 (677)
..++.|++++|.+. .+...+...++|+.|.++++...... ...+...+..+++|+.|+|++|.+..
T Consensus 31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 110 (344)
T d2ca6a1 31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 110 (344)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence 44556666665442 12234555666777766643210000 00122234455667777777666542
Q ss_pred --cchhhccCCCcCEEEecCCC
Q 038430 369 --LPKTLCELYNLQKLDIRGCR 388 (677)
Q Consensus 369 --lp~~i~~l~~L~~L~L~~~~ 388 (677)
+...+...++|+.|++++|.
T Consensus 111 ~~l~~~l~~~~~L~~L~l~~n~ 132 (344)
T d2ca6a1 111 EPLIDFLSKHTPLEHLYLHNNG 132 (344)
T ss_dssp HHHHHHHHHCTTCCEEECCSSC
T ss_pred cchhhhhcccccchheeccccc
Confidence 33444556667777776665
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=2.8e-10 Score=120.01 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=8.7
Q ss_pred ccCCcccCceEEEee
Q 038430 478 LKNMENLLHLYLWFE 492 (677)
Q Consensus 478 l~~~~~L~~L~l~~~ 492 (677)
......++.|+++.|
T Consensus 251 ~~~~~~l~~l~l~~n 265 (460)
T d1z7xw1 251 LHPSSRLRTLWIWEC 265 (460)
T ss_dssp TSTTCCCCEEECTTS
T ss_pred ccccccccccccccc
Confidence 334556666666655
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=9.5e-08 Score=84.07 Aligned_cols=106 Identities=15% Similarity=0.043 Sum_probs=84.1
Q ss_pred CCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcc-ccccch-hhccCCCcCEEEecCCCCccccC-ccccccc
Q 038430 325 LNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELH-IERLPK-TLCELYNLQKLDIRGCRNLRELP-TGIGKLK 401 (677)
Q Consensus 325 l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~-i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~i~~l~ 401 (677)
+.....+... +......|..+..+++|+.|+++++. ++.++. .|.++++|+.|++++|. +..++ ..+..++
T Consensus 7 c~~~~~l~c~-----~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~ 80 (156)
T d2ifga3 7 PHGSSGLRCT-----RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTP 80 (156)
T ss_dssp CSSSSCEECC-----SSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCS
T ss_pred cCCCCeEEec-----CCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCcccccccccc
Confidence 3344556666 44556678888889999999998765 888865 58999999999999998 88875 4689999
Q ss_pred ccceeecCccCCCcccCCcCCCCCCCCccCceeeCC
Q 038430 402 NMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGG 437 (677)
Q Consensus 402 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~ 437 (677)
+|++|++++| .+..+|..+....+|+.|++.++..
T Consensus 81 ~L~~L~Ls~N-~l~~l~~~~~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 81 RLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGNPL 115 (156)
T ss_dssp CCCEEECCSS-CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred cccceeccCC-CCcccChhhhccccccccccCCCcc
Confidence 9999999999 5778887765555788888877654
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.57 E-value=1.4e-09 Score=110.25 Aligned_cols=94 Identities=12% Similarity=0.136 Sum_probs=57.4
Q ss_pred ccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccc-----------cchhhccCCCcCEEEecC
Q 038430 318 FPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIER-----------LPKTLCELYNLQKLDIRG 386 (677)
Q Consensus 318 ~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~-----------lp~~i~~l~~L~~L~L~~ 386 (677)
+...+.....|+.|++++|.+.......+-..+...++|+.|+++++.... +...+...++|+.|+|++
T Consensus 23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~ 102 (344)
T d2ca6a1 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 102 (344)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence 344566677788888876432222223344445667788888887765331 223345677888888887
Q ss_pred CCCccc-----cCcccccccccceeecCccC
Q 038430 387 CRNLRE-----LPTGIGKLKNMRSLLNGLTC 412 (677)
Q Consensus 387 ~~~l~~-----lp~~i~~l~~L~~L~l~~~~ 412 (677)
|. +.. +...+...++|++|++++|.
T Consensus 103 n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 132 (344)
T d2ca6a1 103 NA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG 132 (344)
T ss_dssp CC-CCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred cc-cccccccchhhhhcccccchheeccccc
Confidence 76 322 33345566778888888774
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=7e-08 Score=101.05 Aligned_cols=167 Identities=18% Similarity=0.067 Sum_probs=92.5
Q ss_pred CCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHH----HHhhc-cCCcccCceEEEeecCCCCC
Q 038430 424 LTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEA----ERLEL-KNMENLLHLYLWFEVVDRED 498 (677)
Q Consensus 424 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~----~~~~l-~~~~~L~~L~l~~~~~~~~~ 498 (677)
...++.|++.++...... .......+.....+..+.+++. .+... ....+ .....|+.++++++...
T Consensus 254 ~~~l~~l~l~~n~i~~~~-~~~~~~~l~~~~~l~~l~l~~n----~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~--- 325 (460)
T d1z7xw1 254 SSRLRTLWIWECGITAKG-CGDLCRVLRAKESLKELSLAGN----ELGDEGARLLCETLLEPGCQLESLWVKSCSFT--- 325 (460)
T ss_dssp TCCCCEEECTTSCCCHHH-HHHHHHHHHHCTTCCEEECTTC----CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB---
T ss_pred cccccccccccccccccc-cccccccccccccccccccccc----cccccccchhhccccccccccccccccccchh---
Confidence 456777777665543200 0112334566777777777663 22221 11122 23467899988876211
Q ss_pred cccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCC-----CChh
Q 038430 499 EDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNI-----LPKW 573 (677)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----lp~~ 573 (677)
......+...+...++|++|+|++|.+.. ++.+
T Consensus 326 ------------------------------------------~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 363 (460)
T d1z7xw1 326 ------------------------------------------AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363 (460)
T ss_dssp ------------------------------------------GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHH
T ss_pred ------------------------------------------hhhhhhcccccccccchhhhheeeecccCcccchhhhh
Confidence 11222333344456789999999988642 3334
Q ss_pred Hh-hccCCCeEEEeCCCCCCc-----CC-CCCCcc-cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCcc
Q 038430 574 LT-SLTNLSDLKLVFCENCEQ-----LP-PLGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKV 645 (677)
Q Consensus 574 ~~-~l~~L~~L~l~~c~~~~~-----l~-~l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 645 (677)
+. ..+.|++|+|++| .+.. ++ .+...+ |++|+|++ +.++.-+...+...- .....+|
T Consensus 364 l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~-N~i~~~g~~~l~~~l-------------~~~~~~L 428 (460)
T d1z7xw1 364 LGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSN-NCLGDAGILQLVESV-------------RQPGCLL 428 (460)
T ss_dssp HTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCS-SSCCHHHHHHHHHHH-------------TSTTCCC
T ss_pred hhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECCC-CcCCHHHHHHHHHHH-------------HhCCCcc
Confidence 43 4567999999999 4543 21 144568 99999997 455432211110000 0123479
Q ss_pred ceeeeccccc
Q 038430 646 KSLEIKELEE 655 (677)
Q Consensus 646 ~~L~l~~~~~ 655 (677)
+.|.+.++.-
T Consensus 429 ~~l~l~~~~~ 438 (460)
T d1z7xw1 429 EQLVLYDIYW 438 (460)
T ss_dssp CEEECTTCCC
T ss_pred CEEECCCCCC
Confidence 9999988765
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=5.5e-05 Score=66.26 Aligned_cols=83 Identities=20% Similarity=0.145 Sum_probs=50.5
Q ss_pred CCCCCcCEEEecCcccccc---chhhccCCCcCEEEecCCCCccccCc-ccccccccceeecCccCCCcccCCc------
Q 038430 351 GKLMHLKYLNLSELHIERL---PKTLCELYNLQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMPIG------ 420 (677)
Q Consensus 351 ~~l~~L~~L~Ls~~~i~~l---p~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~------ 420 (677)
..+++|++|+|++|+|+.+ +..+..+++|+.|+|++|. +..++. ......+|+.|++++|.........
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~ 140 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA 140 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence 4567777777777777654 3345677777777777777 666654 2223346777777777533322211
Q ss_pred -CCCCCCCCccCcee
Q 038430 421 -ISKLTSLRTLDKFA 434 (677)
Q Consensus 421 -i~~l~~L~~L~l~~ 434 (677)
+..+++|+.|+...
T Consensus 141 i~~~~P~L~~LDg~~ 155 (162)
T d1koha1 141 IRERFPKLLRLDGHE 155 (162)
T ss_dssp HHTTSTTCCEETTEE
T ss_pred HHHHCCCCCEECcCC
Confidence 34566677666443
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.00011 Score=64.26 Aligned_cols=86 Identities=19% Similarity=0.141 Sum_probs=60.0
Q ss_pred cccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccch-hhccCCCcCEEEecCCCCccccCc----
Q 038430 321 SIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELPT---- 395 (677)
Q Consensus 321 ~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~---- 395 (677)
.+..+++|++|++++|.+.. +..++..+..+++|++|++++|.|+.++. ...+..+|+.|++++|+.......
T Consensus 60 ~~~~~~~L~~L~Ls~N~i~~--l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y 137 (162)
T d1koha1 60 IEENIPELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137 (162)
T ss_dssp HHHHCTTCCCCCCCSSCCCC--CSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred HHHhCCCCCEeeCCCccccC--CchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence 34568889999999643221 22233446788999999999999998865 234556799999999983333221
Q ss_pred ---ccccccccceeec
Q 038430 396 ---GIGKLKNMRSLLN 408 (677)
Q Consensus 396 ---~i~~l~~L~~L~l 408 (677)
.+..+++|+.||-
T Consensus 138 ~~~i~~~~P~L~~LDg 153 (162)
T d1koha1 138 ISAIRERFPKLLRLDG 153 (162)
T ss_dssp HHHHHTTSTTCCEETT
T ss_pred HHHHHHHCCCCCEECc
Confidence 2567899998863
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.89 E-value=0.00055 Score=59.91 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=45.1
Q ss_pred CCcccEEEeCCC-CCCCCCCccCCcccCCCCCcCEEEecCcccc-----ccchhhccCCCcCEEEecCCCCccc-----c
Q 038430 325 LNRLRTLLIDDE-SPPNSSLDKIPENVGKLMHLKYLNLSELHIE-----RLPKTLCELYNLQKLDIRGCRNLRE-----L 393 (677)
Q Consensus 325 l~~L~~L~l~~~-~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~-----~lp~~i~~l~~L~~L~L~~~~~l~~-----l 393 (677)
.++|+.|+++++ .+....+..+-..+...++|+.|+|++|.+. .+...+...+.|++|+|++|. +.. +
T Consensus 14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~~l 92 (167)
T d1pgva_ 14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLARL 92 (167)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh-cchHHHHHH
Confidence 456666666641 1111111122233455566777777776654 233345556667777777765 322 1
Q ss_pred CcccccccccceeecCcc
Q 038430 394 PTGIGKLKNMRSLLNGLT 411 (677)
Q Consensus 394 p~~i~~l~~L~~L~l~~~ 411 (677)
-..+...+.|++|++++|
T Consensus 93 ~~aL~~n~sL~~L~l~~n 110 (167)
T d1pgva_ 93 LRSTLVTQSIVEFKADNQ 110 (167)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHHhCCcCCEEECCCC
Confidence 223445566777777665
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.28 E-value=0.0018 Score=56.42 Aligned_cols=45 Identities=11% Similarity=0.055 Sum_probs=28.3
Q ss_pred HHHHhhhcCCCCCCcEEEEecCCCCCCC--------hhHhhccCCCeEEEeCC
Q 038430 544 DEQLLEALQPPLNVEKLWILFNGGNILP--------KWLTSLTNLSDLKLVFC 588 (677)
Q Consensus 544 ~~~~~~~l~~~~~L~~L~l~~~~~~~lp--------~~~~~l~~L~~L~l~~c 588 (677)
...+...+...++|++|++++|.+..+. ..+..-++|+.|+++++
T Consensus 89 ~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 89 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 3456667777788888888877654442 11224567777777654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=94.31 E-value=0.003 Score=54.86 Aligned_cols=111 Identities=14% Similarity=0.078 Sum_probs=56.9
Q ss_pred cCCCcccEEEeCCC-CCCCCCCccCCcccCCCCCcCEEEecCcccc-----ccchhhccCCCcCEEEecCCCCc----cc
Q 038430 323 HGLNRLRTLLIDDE-SPPNSSLDKIPENVGKLMHLKYLNLSELHIE-----RLPKTLCELYNLQKLDIRGCRNL----RE 392 (677)
Q Consensus 323 ~~l~~L~~L~l~~~-~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~-----~lp~~i~~l~~L~~L~L~~~~~l----~~ 392 (677)
.+.+.|+.|.+++. .+....+..+-..+...++|+.|++++|.++ .+-..+...+.|+.+++++|... ..
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~ 93 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 93 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence 34566777777641 1111111223334456677777777777665 23334556677777777776522 12
Q ss_pred cCcccccccccceeecCccC-CCc-----ccCCcCCCCCCCCccCce
Q 038430 393 LPTGIGKLKNMRSLLNGLTC-SLK-----YMPIGISKLTSLRTLDKF 433 (677)
Q Consensus 393 lp~~i~~l~~L~~L~l~~~~-~~~-----~~p~~i~~l~~L~~L~l~ 433 (677)
+-..+...++|+.++++.+. .++ .+...+...+.|++|++.
T Consensus 94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~ 140 (166)
T d1io0a_ 94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 140 (166)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCc
Confidence 22345566667665554321 111 122234455666666654
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.49 E-value=0.22 Score=45.97 Aligned_cols=117 Identities=10% Similarity=0.108 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHcCCccEEEEEECCcCC----CccchhhhhhhhcCCCCCcEEEEEcCchHHHHhcC------------CC
Q 038430 32 FQSLMSHIHRSIEGKKNFLILNDVWDG----DYNKWAPFFLCLNHGLHGSKILVTTRNELVARMMG------------ST 95 (677)
Q Consensus 32 ~~~~~~~i~~~L~~kr~LlVlDdvw~~----~~~~~~~l~~~~~~~~~gS~IiiTTR~~~v~~~~~------------~~ 95 (677)
..+..+.+. ...++++++|+|++... ...-+..+....... .....+++.+......... ..
T Consensus 123 ~~~~l~~l~-~~~~~~~~i~id~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (283)
T d2fnaa2 123 FANLLESFE-QASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAF 200 (283)
T ss_dssp HHHHHHHHH-HTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCC
T ss_pred HHHHHHHHH-hhcccccccccchhhhhcccchHHHHHHHHHHHHhh-hhhhhhhccccchHHHHHHHhhhhcchhcccce
Confidence 333443332 35578999999998431 111222233333222 2344555555444333221 12
Q ss_pred CeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHHhccC
Q 038430 96 NIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSK 156 (677)
Q Consensus 96 ~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~ 156 (677)
..+.+.+++.+++.+++.+.+-.... . .++ ..++.+.++|.|.+|..+|..+...
T Consensus 201 ~~i~L~~l~~~e~~~~l~~~~~~~~~-~-~~~----~~~i~~~~~G~P~~L~~~~~~~~~~ 255 (283)
T d2fnaa2 201 STVELKPFSREEAIEFLRRGFQEADI-D-FKD----YEVVYEKIGGIPGWLTYFGFIYLDN 255 (283)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTC-C-CCC----HHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred eEEeeCCCCHHHHHHHHHhhhhhcCC-C-HHH----HHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 35789999999999999875422111 1 122 4689999999999999998766544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=92.88 E-value=0.018 Score=49.60 Aligned_cols=82 Identities=20% Similarity=0.130 Sum_probs=53.9
Q ss_pred CCCCCcCEEEecCc-ccc-----ccchhhccCCCcCEEEecCCCCccc-----cCcccccccccceeecCccCCCc----
Q 038430 351 GKLMHLKYLNLSEL-HIE-----RLPKTLCELYNLQKLDIRGCRNLRE-----LPTGIGKLKNMRSLLNGLTCSLK---- 415 (677)
Q Consensus 351 ~~l~~L~~L~Ls~~-~i~-----~lp~~i~~l~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~---- 415 (677)
.+.+.|++|+++++ .++ .+-..+...++|++|++++|. +.. +-..+...+.++.+++++|....
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~ 92 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 92 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence 56688999999874 465 244556688899999999986 432 22345566889999998874321
Q ss_pred ccCCcCCCCCCCCccCce
Q 038430 416 YMPIGISKLTSLRTLDKF 433 (677)
Q Consensus 416 ~~p~~i~~l~~L~~L~l~ 433 (677)
.+...+...++|+.+++.
T Consensus 93 ~l~~~l~~~~~L~~l~L~ 110 (166)
T d1io0a_ 93 ALVEALQSNTSLIELRID 110 (166)
T ss_dssp HHHHGGGGCSSCCEEECC
T ss_pred HHHHHHHhCccccEEeec
Confidence 122445666777765443
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.14 E-value=0.27 Score=43.56 Aligned_cols=93 Identities=13% Similarity=0.073 Sum_probs=68.2
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchH-HHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNEL-VARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+||++..+......+...+.......++|+||++.+ +.... .-...+.+.+++.++..+.+....
T Consensus 107 ~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i~~~~~~~~~~~~~L~~~~------ 180 (207)
T d1a5ta2 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV------ 180 (207)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC------
T ss_pred CccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeEEEecCCCCHHHHHHHHHHcC------
Confidence 4566899999998877778889888988777888888777653 44433 224589999999999988886643
Q ss_pred CCCcchhHHHHHHHHHhcCCchHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAA 146 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal 146 (677)
. -.++....+++.++|.|-..
T Consensus 181 ~---~~~~~~~~i~~~s~Gs~r~a 201 (207)
T d1a5ta2 181 T---MSQDALLAALRLSAGSPGAA 201 (207)
T ss_dssp C---CCHHHHHHHHHHTTTCHHHH
T ss_pred C---CCHHHHHHHHHHcCCCHHHH
Confidence 1 12345677888888887543
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.23 E-value=1 Score=40.51 Aligned_cols=99 Identities=13% Similarity=0.113 Sum_probs=65.1
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchH-HHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNEL-VARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|+++..+...-..+...+......+++|+||.+.. +.... .-...+.+.+++.++-.+...+.+-....
T Consensus 114 ~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~~i~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~- 192 (239)
T d1njfa_ 114 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI- 192 (239)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCccccChhHhhhhcccccccCcHHHhhhHHHHHHhhhcc-
Confidence 3556899999988765555567777777666778888776543 22222 22458999999999988877776532211
Q ss_pred CCCcchhHHHHHHHHHhcCCch-HHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPI-AAK 147 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPL-al~ 147 (677)
. --.+....++..++|-+- ||.
T Consensus 193 ~---~~~~~l~~i~~~s~Gd~R~ain 215 (239)
T d1njfa_ 193 A---HEPRALQLLARAAEGSLRDALS 215 (239)
T ss_dssp C---BCHHHHHHHHHHTTTCHHHHHH
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 1 123456778889988774 443
|