Citrus Sinensis ID: 038444

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALDMAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGACLTVIFQFFIPGTR
cccEEEEcccHHHHHHHHHHHHHHHcccEEEEEEEccEEEEEEEEcccccEEEEEEEccccccccEEEEEccccEEEEEEEHHHHHHHHHHcccccccccccccccccEEEEEcccccccccccccEEEEEEcccEEEEEEEcccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHcccccEEEEEEEccccEEEEEEEccEEEEEEEccccccccccccccccccccHHHHHHHHccccccEEEEEEcHHHHHHcccccccccEEEEEEEcccEEEEEEEEEEEcccc
ccEEEEEcHHHHHHHHHHHHHHHHHHccEEEEEEccccEEEEEccccccccEEEEEEHHHHHHHHEEEEcccccEEEEEEcHHHHHHHHHHHHHHHHccccccccHcHEEEEEEccccccccccccEEEEEEcccEEEEEEcccccccccHHHHHHHccccccccccccEEEEcccHHHHHHHHHHHHccccEEEEEEEcccEEEEEEEccEEEEEEEEccccccccccccccccccccHHHHHHHHHcccccEEEEEEHHHHHHHHHHHHcccccEEEEEcccccEEEEEEEEEccccc
mkfkafltdngVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKetlfddyrissqneDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVkklppnctqampfltfetkgyksaviqdvpiskplsraqgLELQTALDmaqdipptlvqvpdlnqLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGekavapsedrnlsaqtrSERAISRGDAQSVQVSVKHFSKSlqchlakpdcaffgiapqgaCLTVIFQFFIPGTR
mkfkafltdngvnlLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALDMAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEkavapsedrnlsaqtrseraisrgdaqSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGACLTVIFQFFIPGTR
MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALDMAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGACLTVIFQFFIPGTR
****AFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALDMAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEK******************************SVKHFSKSLQCHLAKPDCAFFGIAPQGACLTVIFQFFIP***
MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDISLLQRAVRSG***************************NCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALDMAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLV****************************AQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGACLTVIFQFFIPGT*
MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALDMAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVA*********************************KSLQCHLAKPDCAFFGIAPQGACLTVIFQFFIPGTR
MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALDMAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGE*********************SRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGACLTVIFQFFIPG**
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MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALDMAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGACLTVIFQFFIPGTR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query300 2.2.26 [Sep-21-2011]
O60921280 Checkpoint protein HUS1 O yes no 0.913 0.978 0.235 4e-08
Q54NC0271 Checkpoint protein hus1 h yes no 0.76 0.841 0.239 6e-08
Q8K572276 Checkpoint protein HUS1B yes no 0.883 0.960 0.245 1e-05
P78955287 Checkpoint protein hus1 O yes no 0.72 0.752 0.235 0.0003
>sp|O60921|HUS1_HUMAN Checkpoint protein HUS1 OS=Homo sapiens GN=HUS1 PE=1 SV=1 Back     alignment and function desciption
 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 133/302 (44%), Gaps = 28/302 (9%)

Query: 1   MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYF-LHNLLSGEGIQCVAQFHK 59
           MKF+A + D        R    + K+ K C L ++ +K  F L + L+  G+    +  +
Sbjct: 1   MKFRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQ 60

Query: 60  ETLFDDYR---ISSQNEDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKK 116
           E  F++++   +S++N + I   +    L RA+++              A  L+IKL  K
Sbjct: 61  ENFFNEFQMEGVSAENNE-IYLELTSENLSRALKTA-----------QNARALKIKLTNK 108

Query: 117 LPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALDMAQDIPPTLVQVPD 176
             P  T ++  L+  +      V  D+PI K + R    +LQ  +    D+    + +P 
Sbjct: 109 HFPCLTVSVELLSMSSSS--RIVTHDIPI-KVIPRKLWKDLQEPVVPDPDVS---IYLPV 162

Query: 177 LNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDR 236
           L  +++ V +MK++ + L +     G+L+L+I T L+ +   F+ L      + +  EDR
Sbjct: 163 LKTMKSVVEKMKNISNHLVIEANLDGELNLKIETELVCVTTHFKDLGNPPLASESTHEDR 222

Query: 237 NLSAQTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGACLTVIFQFFI 296
           N+         I R   Q +     + +K+L C++       F +  +   L    Q+FI
Sbjct: 223 NVEHMAEVHIDI-RKLLQFLAGQQVNPTKAL-CNIVNNKMVHFDLLHEDVSL----QYFI 276

Query: 297 PG 298
           P 
Sbjct: 277 PA 278
Component of the 9-1-1 cell-cycle checkpoint response complex that plays a major role in DNA repair. The 9-1-1 complex is recruited to DNA lesion upon damage by the RAD17-replication factor C (RFC) clamp loader complex. Acts then as a sliding clamp platform on DNA for several proteins involved in long-patch base excision repair (LP-BER). The 9-1-1 complex stimulates DNA polymerase beta (POLB) activity by increasing its affinity for the 3'-OH end of the primer-template and stabilizes POLB to those sites where LP-BER proceeds; endonuclease FEN1 cleavage activity on substrates with double, nick, or gap flaps of distinct sequences and lengths; and DNA ligase I (LIG1) on long-patch base excision repair substrates. The 9-1-1 complex is necessary for the recruitment of C12orf32/RHINO to sites of double-stranded breaks (DSB) occurring during the S phase.
Homo sapiens (taxid: 9606)
>sp|Q54NC0|HUS1_DICDI Checkpoint protein hus1 homolog OS=Dictyostelium discoideum GN=hus1 PE=3 SV=1 Back     alignment and function description
>sp|Q8K572|HUS1B_MOUSE Checkpoint protein HUS1B OS=Mus musculus GN=Hus1b PE=2 SV=1 Back     alignment and function description
>sp|P78955|HUS1_SCHPO Checkpoint protein hus1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hus1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
255553253320 conserved hypothetical protein [Ricinus 1.0 0.937 0.86 1e-149
449436140319 PREDICTED: uncharacterized protein LOC10 0.996 0.937 0.843 1e-144
225442902323 PREDICTED: uncharacterized protein LOC10 1.0 0.928 0.778 1e-139
297743486330 unnamed protein product [Vitis vinifera] 1.0 0.909 0.778 1e-138
297847640319 hypothetical protein ARALYDRAFT_474377 [ 0.996 0.937 0.79 1e-137
5903067344 F6D8.25 [Arabidopsis thaliana] 0.996 0.869 0.783 1e-137
79364243319 HUS1 checkpoint protein [Arabidopsis tha 0.996 0.937 0.783 1e-137
224128614318 predicted protein [Populus trichocarpa] 0.99 0.933 0.807 1e-135
357441627318 Hus1 protein [Medicago truncatula] gi|35 0.993 0.937 0.75 1e-125
388504714321 unknown [Lotus japonicus] 1.0 0.934 0.750 1e-122
>gi|255553253|ref|XP_002517669.1| conserved hypothetical protein [Ricinus communis] gi|223543301|gb|EEF44833.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 258/300 (86%), Positives = 278/300 (92%)

Query: 1   MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKE 60
           MKFKAFLT+NGV+LLE+RFLPALDKMGKVCHL LTR+ A FLHNLLSG+G+Q +AQF KE
Sbjct: 1   MKFKAFLTENGVSLLERRFLPALDKMGKVCHLLLTRDHAIFLHNLLSGDGVQSIAQFCKE 60

Query: 61  TLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPN 120
            LFDDYRISSQNED IAF+IDISLLQRAVRS VSIC+E GA G AANRLQIKLVKKLPPN
Sbjct: 61  ALFDDYRISSQNEDRIAFSIDISLLQRAVRSSVSICNEFGAGGLAANRLQIKLVKKLPPN 120

Query: 121 CTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALDMAQDIPPTLVQVPDLNQL 180
           CTQ MPFLTFETKGYKSAVIQDVPISKPLSRAQ LELQ ALD AQD+P TLVQVPD NQL
Sbjct: 121 CTQPMPFLTFETKGYKSAVIQDVPISKPLSRAQVLELQMALDNAQDLPQTLVQVPDFNQL 180

Query: 181 QNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSA 240
           QN+V RMKH+GDLLNVSI KYGDLH+QISTTLITLGAEFRKLLVIG+KA AP+ED+N+SA
Sbjct: 181 QNYVDRMKHIGDLLNVSISKYGDLHMQISTTLITLGAEFRKLLVIGDKAQAPAEDQNVSA 240

Query: 241 QTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGACLTVIFQFFIPGTR 300
           QTRSERA+SRGDAQSVQVSV+HFSKSLQCHLAKPDCAF+GI  QGACLTVIFQFFIPGTR
Sbjct: 241 QTRSERAVSRGDAQSVQVSVRHFSKSLQCHLAKPDCAFYGIVAQGACLTVIFQFFIPGTR 300

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449436140|ref|XP_004135852.1| PREDICTED: uncharacterized protein LOC101207808 [Cucumis sativus] gi|449491049|ref|XP_004158784.1| PREDICTED: uncharacterized LOC101207808 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225442902|ref|XP_002263600.1| PREDICTED: uncharacterized protein LOC100266426 [Vitis vinifera] gi|147865235|emb|CAN81953.1| hypothetical protein VITISV_014018 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297743486|emb|CBI36353.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297847640|ref|XP_002891701.1| hypothetical protein ARALYDRAFT_474377 [Arabidopsis lyrata subsp. lyrata] gi|297337543|gb|EFH67960.1| hypothetical protein ARALYDRAFT_474377 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|5903067|gb|AAD55626.1|AC008016_36 F6D8.25 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79364243|ref|NP_175662.2| HUS1 checkpoint protein [Arabidopsis thaliana] gi|46016023|emb|CAE55212.1| Hus1 protein [Arabidopsis thaliana] gi|332194698|gb|AEE32819.1| HUS1 checkpoint protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224128614|ref|XP_002329047.1| predicted protein [Populus trichocarpa] gi|222839718|gb|EEE78041.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357441627|ref|XP_003591091.1| Hus1 protein [Medicago truncatula] gi|355480139|gb|AES61342.1| Hus1 protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|388504714|gb|AFK40423.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
TAIR|locus:2035129319 AT1G52530 "AT1G52530" [Arabido 0.996 0.937 0.783 8.9e-125
UNIPROTKB|O60921280 HUS1 "Checkpoint protein HUS1" 0.92 0.985 0.224 1.1e-07
UNIPROTKB|E1BG06280 LOC786788 "Uncharacterized pro 0.91 0.975 0.222 1.8e-07
UNIPROTKB|F1Q245280 HUS1 "Uncharacterized protein" 0.69 0.739 0.228 3.2e-07
RGD|1591976281 Hus1 "HUS1 checkpoint homolog 0.71 0.758 0.235 7.3e-07
UNIPROTKB|I3LBK1206 HUS1 "Uncharacterized protein" 0.6 0.873 0.244 2.4e-06
MGI|MGI:1277962280 Hus1 "Hus1 homolog (S. pombe)" 0.713 0.764 0.241 2.8e-06
UNIPROTKB|Q7ZTA4282 hus1 "Hus1 protein" [Xenopus l 0.783 0.833 0.211 2.8e-06
UNIPROTKB|B4DFI9259 HUS1 "cDNA FLJ57918, highly si 0.84 0.972 0.222 2.9e-06
ZFIN|ZDB-GENE-070410-106284 zgc:162895 "zgc:162895" [Danio 0.91 0.961 0.222 2.9e-06
TAIR|locus:2035129 AT1G52530 "AT1G52530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
 Identities = 235/300 (78%), Positives = 267/300 (89%)

Query:     1 MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKE 60
             MKFKAFLT+NGVNLLEKRFLPA DKMGK CHL LT+E  +FLHNLL+G+G+QC+AQF K+
Sbjct:     1 MKFKAFLTENGVNLLEKRFLPAFDKMGKNCHLLLTKEHLFFLHNLLNGDGVQCIAQFRKD 60

Query:    61 TLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPN 120
              LFDDYRISSQNED IAF++D++LL RAV+S VSIC+E  + G A+NRLQIKLVKKLPPN
Sbjct:    61 VLFDDYRISSQNEDRIAFSLDVALLYRAVKSSVSICTEF-SGGLASNRLQIKLVKKLPPN 119

Query:   121 CTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALDMAQDIPPTLVQVPDLNQL 180
             CTQ MPFLTFETKGYKSAVIQDVPI+KPLSR+Q +ELQTALD AQD+PPTLVQV D NQL
Sbjct:   120 CTQPMPFLTFETKGYKSAVIQDVPITKPLSRSQVIELQTALDSAQDLPPTLVQVQDSNQL 179

Query:   181 QNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSA 240
             QNFV  M+HVGD+LNV+I K+GDL +Q+STTLI LG EF++L VIGEK+ AP EDRNLSA
Sbjct:   180 QNFVDHMRHVGDVLNVTISKHGDLQVQVSTTLIRLGIEFQRLSVIGEKSQAPVEDRNLSA 239

Query:   241 QTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGACLTVIFQFFIPGTR 300
             Q RSERAI+RGDAQSVQVSVKHFSKSLQCHL KPD  F+GIAPQGACLTVIFQF +PGTR
Sbjct:   240 QARSERAIARGDAQSVQVSVKHFSKSLQCHLTKPDSTFYGIAPQGACLTVIFQFMVPGTR 299
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|O60921 HUS1 "Checkpoint protein HUS1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BG06 LOC786788 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q245 HUS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1591976 Hus1 "HUS1 checkpoint homolog (S. pombe)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LBK1 HUS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1277962 Hus1 "Hus1 homolog (S. pombe)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q7ZTA4 hus1 "Hus1 protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|B4DFI9 HUS1 "cDNA FLJ57918, highly similar to Checkpoint protein HUS1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070410-106 zgc:162895 "zgc:162895" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00000292001
SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_104, whole genome shotgun sequence); (323 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00016955001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (675 aa)
      • 0.483
GSVIVG00022150001
RecName- Full=DNA ligase; EC=6.5.1.1; (783 aa)
      • 0.480
GSVIVG00006793001
RecName- Full=DNA ligase; EC=6.5.1.1; (1165 aa)
      • 0.480
GSVIVG00006288001
RecName- Full=DNA ligase; EC=6.5.1.1; (377 aa)
      • 0.480

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
pfam04005287 pfam04005, Hus1, Hus1-like protein 2e-90
>gnl|CDD|217839 pfam04005, Hus1, Hus1-like protein Back     alignment and domain information 
 Score =  270 bits (692), Expect = 2e-90
 Identities = 94/311 (30%), Positives = 143/311 (45%), Gaps = 35/311 (11%)

Query: 1   MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKE 60
           MKF+A +TD        R L  L K+GK C L LT EK  F+ N  + +G+Q   Q   +
Sbjct: 1   MKFRAKITDI---ETLTRVLSTLSKLGKFCVLRLTPEKLRFIINGSANDGVQVWCQLPVD 57

Query: 61  TLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPN 120
            +FD+Y+I S +E+ I   +D+  L RA++S  +           A+ L+I+L KK    
Sbjct: 58  LIFDEYQIESNSENEINLEVDLDNLLRALKSADN-----------ASSLKIRLTKKDR-- 104

Query: 121 CTQAMPFLTFETKGYKS-----AVIQDVPISKPLSRAQGLELQTALDMAQDIPPTLVQVP 175
                P L  E  G  S      V  D+P+ K L R++  +LQ  L    D+    + +P
Sbjct: 105 ----TPCLALEISGTSSSEGSRVVTHDIPV-KVLPRSEVEDLQEPLVPDPDVS---IYLP 156

Query: 176 DLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSED 235
            L QL+N V RMK++ DL+ +S   +G+L+L + T L+T+   +  L            D
Sbjct: 157 PLKQLKNVVDRMKNLSDLVTISANMHGELNLVVETDLVTVTTHWSGLENPPLDPAELDLD 216

Query: 236 RNLSAQTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGAC------LT 289
             LSA T S+      +  SV+V +K  +K L      P      I  + A         
Sbjct: 217 SELSASTGSDDDRDPDEEASVRVDIKKLAKFLSVGQLSPSKVVACIVHEHALILYVLDED 276

Query: 290 VIFQFFIPGTR 300
           V   ++IP  R
Sbjct: 277 VSLTYYIPAVR 287

Hus1, Rad1, and Rad9 are three evolutionarily conserved proteins required for checkpoint control in fission yeast. These proteins are known to form a stable complex in vivo. Hus1-Rad1-Rad9 complex may form a PCNA-like ring structure, and could function as a sliding clamp during checkpoint control. Length = 287

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 300
PF04005292 Hus1: Hus1-like protein; InterPro: IPR007150 Hus1, 100.0
KOG3999284 consensus Checkpoint 9-1-1 complex, HUS1 component 100.0
PLN00057263 proliferating cell nuclear antigen; Provisional 99.66
TIGR00590259 pcna proliferating cell nuclear antigen (pcna). Al 99.64
PHA03383262 PCNA-like protein; Provisional 99.6
PTZ00113275 proliferating cell nuclear antigen; Provisional 99.59
cd00577248 PCNA Proliferating Cell Nuclear Antigen (PCNA) dom 99.48
PTZ00483264 proliferating cell nuclear antigen; Provisional 99.48
PRK01115247 DNA polymerase sliding clamp; Validated 98.99
KOG1636260 consensus DNA polymerase delta processivity factor 98.95
PF00705127 PCNA_N: Proliferating cell nuclear antigen, N-term 98.9
PF02144275 Rad1: Repair protein Rad1/Rec1/Rad17; InterPro: IP 98.56
PF04139252 Rad9: Rad9; InterPro: IPR007268 Rad9 is required f 98.0
PF02747128 PCNA_C: Proliferating cell nuclear antigen, C-term 96.83
PRK01115247 DNA polymerase sliding clamp; Validated 94.65
cd00140365 beta_clamp Beta clamp domain. The beta subunit (pr 93.93
COG0592364 DnaN DNA polymerase sliding clamp subunit (PCNA ho 93.03
PF02747128 PCNA_C: Proliferating cell nuclear antigen, C-term 92.0
PF02768121 DNA_pol3_beta_3: DNA polymerase III beta subunit, 89.4
TIGR00590259 pcna proliferating cell nuclear antigen (pcna). Al 84.39
PF00712120 DNA_pol3_beta: DNA polymerase III beta subunit, N- 83.15
cd00577248 PCNA Proliferating Cell Nuclear Antigen (PCNA) dom 81.26
>PF04005 Hus1: Hus1-like protein; InterPro: IPR007150 Hus1, Rad1, and Rad9 are three evolutionarily conserved proteins required for checkpoint control in fission yeast Back     alignment and domain information 
Probab=100.00  E-value=3.6e-73  Score=530.95  Aligned_cols=276  Identities=32%  Similarity=0.495  Sum_probs=199.6

Q ss_pred             CeeeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEE
Q 038444            1 MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAI   80 (300)
Q Consensus         1 MkFrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev   80 (300)
                      |||||++.|.   .+|++++++++||+|.|+|||||++++||++..+++|+|+||+++++.+|++|+|||.++|+|+||+
T Consensus         1 MKFka~i~~~---~~~~~~~~~~~kl~k~~vlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~~F~~y~i~s~~~N~I~le~   77 (292)
T PF04005_consen    1 MKFKATISDI---KLFKKFVSTISKLGKRCVLRLTPERLHFISTSDDSDGIQVWCELPQDSLFSEYRIQSASENEIYLEV   77 (292)
T ss_dssp             -EEEEEEE-H---HHHHHHHHHHHHH-SEEEEEE-SSEEEEEEE-SSTT--EEEEEEEGGGT-SEEEEE-SSSS-EEEEE
T ss_pred             CcceEEecCH---HHHHHHHHHHHHhhCEEEEEEeCCEEEEEEecCCCCeEEEEEEEChhhcCcccEEEeCCCCEEEEEE
Confidence            9999999983   5569999999999999999999999999988779999999999999999999999999999999999


Q ss_pred             ehHHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEEC-----ceeEEEEEeecCcccChhhhc
Q 038444           81 DISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKG-----YKSAVIQDVPISKPLSRAQGL  155 (300)
Q Consensus        81 ~~~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g-----~~~~v~hdvPV~~vl~~~~~~  155 (300)
                      ++++|+||||++.+           +.+++|||+||+      +.|||+|++++     .++.|+||||| +++++++|+
T Consensus        78 ~~~~L~raLrs~~~-----------a~~~~ikL~kk~------~~p~L~~~~~~~~~~~~~~~v~hdiPV-~vl~~~~~~  139 (292)
T PF04005_consen   78 NIDSLLRALRSADN-----------ASSVKIKLTKKG------RMPCLSFEITGTSSSGRSRIVVHDIPV-RVLPRREWE  139 (292)
T ss_dssp             EHHHHHHHHCTCSS-----------CSEEEEEEE-S-------SSSEEEEEEEE--SSST-EEEEEEEEB-EE--GGGGG
T ss_pred             cHHHHHHHHHhhcc-----------CceeEEehhhcc------CCcEEEEEEEeeccCCCccEEEEECCe-EecCHHHHH
Confidence            99999999999998           569999999996      48999999984     34699999999 699999999


Q ss_pred             hhhhhhcccCCCCCeEEEcCChhhHHHHHHhhhccCCEEEEEEEcCCeEEEEEeecceEEeEEeccccccccccCCC---
Q 038444          156 ELQTALDMAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAP---  232 (300)
Q Consensus       156 ~l~eP~~~~~~~p~~~i~lP~l~~l~~ivdR~k~~~~~v~i~an~~G~L~l~v~t~~v~v~t~~~~L~~~~~~~~~~---  232 (300)
                      +|+||++   +.|+++|+||+++.|++++||||++|++++|+||++|+|+|.|+++.|+|+|+|+||.++++.+.+.   
T Consensus       140 ~~~eP~~---~~~dv~i~LP~l~~l~~~veR~k~~s~~v~i~an~~G~L~L~v~t~~~~v~t~~~~L~~~~~~~~~~~~~  216 (292)
T PF04005_consen  140 ELQEPMV---PDPDVSIYLPPLKQLRSIVERMKNLSDYVTISANMNGELRLSVETDSVSVETEFRGLENPPLDPAELNTV  216 (292)
T ss_dssp             GGS----------SEEEE-S-HHHHHHHHHHHHTT-SEEEEEE-SSS-EEEEEE-SSEEEEEEE-S--------------
T ss_pred             Hhhhccc---CCCCEEEECCCHHHHHHHHHHHhccCceEEEEEECCCcEEEEEEeCcEEEEEEECCCCCCcccccccccc
Confidence            9999987   7899999999999999999999999999999999999999999999999999999999987633211   


Q ss_pred             -CccccccccchhhhhcCCCCeEEEEEechhHHhhccccccCCcEEEEEEECCCeE-EE------EEEEEEeccCC
Q 038444          233 -SEDRNLSAQTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGAC-LT------VIFQFFIPGTR  300 (300)
Q Consensus       233 -~~~~~~~~~~~~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~v~~~i~~~~~~-~~------~~l~y~ip~~~  300 (300)
                       ..+++..+++..+++.+++++++|+||+|+|++||++++++|++|+|||.|+++| ++      ++|+|||||+|
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~sV~Vd~K~~~~~l~~~~~~p~~vi~~I~~~~~~vl~~~~~~~~~l~yyip~~~  292 (292)
T PF04005_consen  217 DQLPSEDDSDSDQQEERDPEEFASVRVDIKDLAKFLKSHQLSPSRVICCICHNKALVLHVYLDEDVSLTYYIPAVR  292 (292)
T ss_dssp             ----------SSSSS-------EEEEEEHHHHHHHHHH--S--SEEEEEEETTTEEEEEEEE-TTEEEEEEEE---
T ss_pred             ccccccccccccccccCCCCcEEEEEEEHHHHHHhhCccccCCCEEEEEEccCCeEEEEEEEcCCEEEEEEEeccC
Confidence             1111111111222345566899999999999999999999999999999999988 43      56999999997

These proteins are known to form a stable complex in vivo []. Hus1-Rad1-Rad9 complex may form a PCNA-like ring structure, and could function as a sliding clamp during checkpoint control.; PDB: 3A1J_B 3G65_C 3GGR_B.
>KOG3999 consensus Checkpoint 9-1-1 complex, HUS1 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PLN00057 proliferating cell nuclear antigen; Provisional Back     alignment and domain information
>TIGR00590 pcna proliferating cell nuclear antigen (pcna) Back     alignment and domain information
>PHA03383 PCNA-like protein; Provisional Back     alignment and domain information
>PTZ00113 proliferating cell nuclear antigen; Provisional Back     alignment and domain information
>cd00577 PCNA Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea Back     alignment and domain information
>PTZ00483 proliferating cell nuclear antigen; Provisional Back     alignment and domain information
>PRK01115 DNA polymerase sliding clamp; Validated Back     alignment and domain information
>KOG1636 consensus DNA polymerase delta processivity factor (proliferating cell nuclear antigen) [Replication, recombination and repair] Back     alignment and domain information
>PF00705 PCNA_N: Proliferating cell nuclear antigen, N-terminal domain; InterPro: IPR022648 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication [] Back     alignment and domain information
>PF02144 Rad1: Repair protein Rad1/Rec1/Rad17; InterPro: IPR003021 REC1 of Ustilago maydis plays a key role in regulating the genetic system of the fungus Back     alignment and domain information
>PF04139 Rad9: Rad9; InterPro: IPR007268 Rad9 is required for transient cell-cycle arrests and transcriptional induction of DNA repair in response to DNA damage Back     alignment and domain information
>PF02747 PCNA_C: Proliferating cell nuclear antigen, C-terminal domain; InterPro: IPR022649 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication [] Back     alignment and domain information
>PRK01115 DNA polymerase sliding clamp; Validated Back     alignment and domain information
>cd00140 beta_clamp Beta clamp domain Back     alignment and domain information
>COG0592 DnaN DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair] Back     alignment and domain information
>PF02747 PCNA_C: Proliferating cell nuclear antigen, C-terminal domain; InterPro: IPR022649 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication [] Back     alignment and domain information
>PF02768 DNA_pol3_beta_3: DNA polymerase III beta subunit, C-terminal domain; InterPro: IPR022635 This entry describes the C-terminal domain of the beta chain of DNA polymerase III Back     alignment and domain information
>TIGR00590 pcna proliferating cell nuclear antigen (pcna) Back     alignment and domain information
>PF00712 DNA_pol3_beta: DNA polymerase III beta subunit, N-terminal domain; InterPro: IPR022634 This entry describes the N-terminal domain of the beta chain of DNA polymerase III Back     alignment and domain information
>cd00577 PCNA Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
3g65_C280 Crystal Structure Of The Human Rad9-Rad1-Hus1 Dna D 3e-09
3ggr_B286 Crystal Structure Of The Human Rad9-Hus1-Rad1 Compl 1e-08
3a1j_B281 Crystal Structure Of The Human Rad9-Hus1-Rad1 Compl 1e-06
>pdb|3G65|C Chain C, Crystal Structure Of The Human Rad9-Rad1-Hus1 Dna Damage Checkpoint Complex Length = 280 Back     alignment and structure 
Iteration: 1

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 133/302 (44%), Gaps = 28/302 (9%)
Query: 1   MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYF-LHNLLSGEGIQCVAQFHK 59
           MKF+A + D        R    + K+ K C L ++ +K  F L + L+  G+    +  +
Sbjct: 1   MKFRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQ 60
Query: 60  ETLFDDYR---ISSQNEDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKK 116
           E  F++++   +S++N + I   +    L RA+++              A  L+IKL  K
Sbjct: 61  ENFFNEFQMEGVSAENNE-IYLELTSENLSRALKTA-----------QNARALKIKLTNK 108
Query: 117 LPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALDMAQDIPPTLVQVPD 176
             P  T ++  L+  +      V  D+PI K + R    +LQ  +    D+    + +P 
Sbjct: 109 HFPCLTVSVELLSMSSSS--RIVTHDIPI-KVIPRKLWKDLQEPVVPDPDVS---IYLPV 162
Query: 177 LNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDR 236
           L  +++ V +MK++ + L +     G+L+L+I T L+ +   F+ L      + +  EDR
Sbjct: 163 LKTMKSVVEKMKNISNHLVIEANLDGELNLKIETELVCVTTHFKDLGNPPLASESTHEDR 222
Query: 237 NLSAQTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGACLTVIFQFFI 296
           N+         I R   Q +     + +K+L C++       F +  +   L    Q+FI
Sbjct: 223 NVEHMAEVHIDI-RKLLQFLAGQQVNPTKAL-CNIVNNKMVHFDLLHEDVSL----QYFI 276
Query: 297 PG 298
           P 
Sbjct: 277 PA 278
>pdb|3GGR|B Chain B, Crystal Structure Of The Human Rad9-Hus1-Rad1 Complex Length = 286 Back     alignment and structure
>pdb|3A1J|B Chain B, Crystal Structure Of The Human Rad9-Hus1-Rad1 Complex Length = 281 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
3a1j_B281 HHUS1, checkpoint protein HUS1; DNA damage, DNA re 1e-66
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B Length = 281 Back     alignment and structure
 Score =  209 bits (532), Expect = 1e-66
 Identities = 68/307 (22%), Positives = 125/307 (40%), Gaps = 38/307 (12%)

Query: 1   MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYF-LHNLLSGEGIQCVAQFHK 59
           MKF+A + D        R    + K+ K C L ++ +K  F L + L+  G+    +  +
Sbjct: 2   MKFRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQ 61

Query: 60  ETLFDDYRIS--SQNEDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKL 117
           E  F+++++   S   + I   +    L RA+++  +           A  L+IKL  K 
Sbjct: 62  ENFFNEFQMEGVSAENNEIYLELTSENLSRALKTAQN-----------ARALKIKLTNKH 110

Query: 118 PPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALDMAQDIPPTLVQVPDL 177
            P  T ++  L+  +      V  D+PI K + R    +LQ  +    D+    + +P L
Sbjct: 111 FPCLTVSVELLSMSSSS--RIVTHDIPI-KVIPRKLWKDLQEPVVPDPDV---SIYLPVL 164

Query: 178 NQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRN 237
             +++ V +MK++ + L +     G+L+L+I T L+ +   F+ L      + +  EDRN
Sbjct: 165 KTMKSVVEKMKNISNHLVIEANLDGELNLKIETELVCVTTHFKDLGNPPLASESTHEDRN 224

Query: 238 LSAQTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGACL------TVI 291
           +                 V + ++   + L      P  A   I              V 
Sbjct: 225 VEHMA------------EVHIDIRKLLQFLAGQQVNPTKALCNIVNNKMVHFDLLHEDVS 272

Query: 292 FQFFIPG 298
            Q+FIP 
Sbjct: 273 LQYFIPA 279
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
3a1j_B281 HHUS1, checkpoint protein HUS1; DNA damage, DNA re 100.0
1plq_A258 Proliferating cell nuclear antigen (PCNA); DNA-bin 99.82
1u7b_A261 PCNA, cyclin, proliferating cell nuclear antigen; 99.81
2zvv_A276 PCNA 1, proliferating cellular nuclear antigen 1; 99.8
1iz5_A249 Proliferating cell nuclear antigen; DNA, replicati 99.78
3aiz_C246 DNA polymerase sliding clamp C; protein-protein co 99.72
3lx2_A259 DNA polymerase sliding clamp 2; PCNA, DNA processi 99.7
3aiz_A248 DNA polymerase sliding clamp B; protein-protein co 99.68
2ijx_A244 DNA polymerase sliding clamp A; PCNA3 subunit, pro 99.63
1ud9_A245 DNA polymerase sliding clamp A; DNA-binding, DNA r 99.62
1rwz_A245 DNA polymerase sliding clamp; torus, processivity 99.61
3fds_C249 DNA polymerase sliding clamp B; protein-protein co 99.58
3k4x_A 798 PCNA, proliferating cell nuclear antigen; DNA repl 99.51
3p91_A265 Proliferating cell nuclear antigen; DNA binding pr 99.51
3fds_D245 DNA polymerase sliding clamp C; protein-protein co 99.51
3a1j_C263 Cell cycle checkpoint protein RAD1; DNA damage, DN 99.44
3k4x_A798 PCNA, proliferating cell nuclear antigen; DNA repl 99.39
3ifv_A247 PCNA; processivity factor, sliding clamp, halophil 99.35
3a1j_A266 Cell cycle checkpoint control protein RAD9A; DNA d 99.33
3g65_A296 Cell cycle checkpoint control protein RAD9A; PCNA, 98.61
1dml_A319 DNA polymerase processivity factor; herpes simplex 91.44
3a1j_C263 Cell cycle checkpoint protein RAD1; DNA damage, DN 90.66
3fds_C249 DNA polymerase sliding clamp B; protein-protein co 89.08
3lx2_A259 DNA polymerase sliding clamp 2; PCNA, DNA processi 88.42
1u7b_A261 PCNA, cyclin, proliferating cell nuclear antigen; 87.82
3p91_A265 Proliferating cell nuclear antigen; DNA binding pr 87.35
3fds_D245 DNA polymerase sliding clamp C; protein-protein co 86.31
1plq_A258 Proliferating cell nuclear antigen (PCNA); DNA-bin 85.25
2zvv_A276 PCNA 1, proliferating cellular nuclear antigen 1; 83.37
1iz5_A249 Proliferating cell nuclear antigen; DNA, replicati 82.77
3ifv_A247 PCNA; processivity factor, sliding clamp, halophil 82.5
3aiz_A248 DNA polymerase sliding clamp B; protein-protein co 81.3
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B Back     alignment and structure
Probab=100.00  E-value=5.8e-59  Score=431.61  Aligned_cols=265  Identities=24%  Similarity=0.381  Sum_probs=234.6

Q ss_pred             CeeeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeee-cCCCceEEEEEEccCCCcCeeEeeecC--CCeEE
Q 038444            1 MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNL-LSGEGIQCVAQFHKETLFDDYRISSQN--EDCIA   77 (300)
Q Consensus         1 MkFrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~-~~~~g~qvw~~l~~~~lF~ey~ieS~~--~N~I~   77 (300)
                      |||||++.+.++..+|+++++++++|+|.|+++|+|+.++|+..+ ..++|+|+||.+.++.+|++|+|+|.+  +|+|+
T Consensus         2 MkF~a~l~~~~~~~~lkki~~ai~~L~k~~~l~~t~~~l~~~~~d~~~~~~v~l~~~~~~~~~F~~Y~~~s~~~~~n~I~   81 (281)
T 3a1j_B            2 MKFRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQENFFNEFQMEGVSAENNEIY   81 (281)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHHHHHCSEEEEEECSSEEEEEECCCC--CCCEEEEEEEGGGTCSEEEEECSSSTTCCEE
T ss_pred             ceEEEEecCcchHHHHHHHHHHHHHHhCEEEEEEcCCEEEEEECCCCCCCeEEEEEEeehhcCCCCeEEeeccCCCCEEE
Confidence            999999999876777899999999999999999999999999754 245899999999999999999999764  79999


Q ss_pred             EEEehHHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEE-----CceeEEEEEeecCcccChh
Q 038444           78 FAIDISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETK-----GYKSAVIQDVPISKPLSRA  152 (300)
Q Consensus        78 lev~~~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~-----g~~~~v~hdvPV~~vl~~~  152 (300)
                      ||+++++|.||||+|.+           ++.++|||+|++       .|+|+|+++     +.++.++||+|| ++++.+
T Consensus        82 l~v~~~~L~k~Lk~a~n-----------~~~~~ikL~k~~-------~p~L~fe~~~~~~~~~~~~v~~dipv-kll~~~  142 (281)
T 3a1j_B           82 LELTSENLSRALKTAQN-----------ARALKIKLTNKH-------FPCLTVSVELLSMSSSSRIVTHDIPI-KVIPRK  142 (281)
T ss_dssp             EEEEHHHHHHHGGGGGG-----------EEEEEEEEECSS-------SCEEEEEEEECCSSSCCCEEEEEEEC-EECCGG
T ss_pred             EEEeHHHHHHHHHhcCC-----------CCeEEEEeccCC-------CCEEEEEEEcccCCCCceEEEEEeee-EEcCHH
Confidence            99999999999999986           789999999996       799999998     667899999999 799999


Q ss_pred             hhchhhhhhcccCCCCCeEEEcCChhhHHHHHHhhhccCCEEEEEEEcCCeEEEEEeecceEEeEEeccccccccccCCC
Q 038444          153 QGLELQTALDMAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAP  232 (300)
Q Consensus       153 ~~~~l~eP~~~~~~~p~~~i~lP~l~~l~~ivdR~k~~~~~v~i~an~~G~L~l~v~t~~v~v~t~~~~L~~~~~~~~~~  232 (300)
                      +|++|.+|.+   +.|+++|.||++++|++++||||++|+.|+|+||++|+|+|++++|.++++++|++|.++++..  +
T Consensus       143 ~~e~l~~P~~---~~~dv~i~lPsl~~~~~iv~~lk~i~d~v~i~a~~~G~l~f~~~~d~~~~~~~~~~l~~~~~~~--~  217 (281)
T 3a1j_B          143 LWKDLQEPVV---PDPDVSIYLPVLKTMKSVVEKMKNISNHLVIEANLDGELNLKIETELVCVTTHFKDLGNPPLAS--E  217 (281)
T ss_dssp             GGGGGSCCCC---CCCSEEEECCCHHHHHHHHHHHHTTCSEEEEEECTTSCEEEEEECSSEEEEEEECCCCCCCC-----
T ss_pred             HHhhcCCCCC---CCCCeEEECCCHHHHHHHHHHHhccCCeEEEEEECCCeEEEEEEeeeEEEEEEEcCCCCCCCCc--c
Confidence            9999999965   5689999999999999999999999999999999999999999999999999999999765421  1


Q ss_pred             CccccccccchhhhhcCCCCeEEEEEechhHHhhccccccCCcEEEEEEECCCeEE-E-----EEEEEEeccC
Q 038444          233 SEDRNLSAQTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGACL-T-----VIFQFFIPGT  299 (300)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~v~~~i~~~~~~~-~-----~~l~y~ip~~  299 (300)
                      .+    +      +..+++++++|+|++|+|.+|++++++.|+.++|+|.++++++ +     +.|+|||||+
T Consensus       218 ~~----~------~~~~~~~~~sv~~~~k~l~~f~k~~~ls~~v~~~~i~~~~~l~~y~~~~~g~l~yylp~~  280 (281)
T 3a1j_B          218 ST----H------EDRNVEHMAEVHIDIRKLLQFLAGQQVNPTKALCNIVNNKMVHFDLLHEDVSLQYFIPAL  280 (281)
T ss_dssp             -----------------CCCCEEEEEEHHHHHHHHHHCCSCCSEEEEEEETTTEEEEEEESSSCEEEEEEECC
T ss_pred             cc----c------cccCCCccEEEEEEHHHHHHhhCcccCCCcEEEEEEeCCceEEEEEeCCcEEEEEEeeec
Confidence            11    0      1233447999999999999999999999999999999999874 2     4699999996
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B Back     alignment and structure
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A* Back     alignment and structure
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A Back     alignment and structure
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A* Back     alignment and structure
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A* Back     alignment and structure
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis} Back     alignment and structure
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B* Back     alignment and structure
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C* Back     alignment and structure
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2 Back     alignment and structure
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A* Back     alignment and structure
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C* Back     alignment and structure
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae} Back     alignment and structure
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica} Back     alignment and structure
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B* Back     alignment and structure
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C Back     alignment and structure
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae} Back     alignment and structure
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A Back     alignment and structure
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A Back     alignment and structure
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens} Back     alignment and structure
>1dml_A DNA polymerase processivity factor; herpes simplex virus, DNA synthesis, sliding clamps, PCNA, processivity, DNA binding protein/transferase complex; HET: DNA; 2.70A {Human herpesvirus 1} SCOP: d.131.1.2 d.131.1.2 Back     alignment and structure
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C Back     alignment and structure
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C* Back     alignment and structure
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis} Back     alignment and structure
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A* Back     alignment and structure
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica} Back     alignment and structure
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B* Back     alignment and structure
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B Back     alignment and structure
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A Back     alignment and structure
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A* Back     alignment and structure
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A Back     alignment and structure
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
d1u7ba1126 Proliferating cell nuclear antigen (PCNA) {Human ( 98.78
d1plqa1126 Proliferating cell nuclear antigen (PCNA) {Baker's 98.74
d1iz5a1119 Proliferating cell nuclear antigen (PCNA) {Archaeo 98.69
d1rwza1122 Proliferating cell nuclear antigen (PCNA) {Archaeo 98.55
d1ud9a1119 Proliferating cell nuclear antigen (PCNA) {Archaeo 98.49
d1iz5a2121 Proliferating cell nuclear antigen (PCNA) {Archaeo 96.23
d1plqa2132 Proliferating cell nuclear antigen (PCNA) {Baker's 96.15
d1u7ba2129 Proliferating cell nuclear antigen (PCNA) {Human ( 96.01
d1rwza2122 Proliferating cell nuclear antigen (PCNA) {Archaeo 95.72
d1ud9a2119 Proliferating cell nuclear antigen (PCNA) {Archaeo 94.74
d1ud9a2119 Proliferating cell nuclear antigen (PCNA) {Archaeo 93.89
d1u7ba2129 Proliferating cell nuclear antigen (PCNA) {Human ( 93.14
d1iz5a2121 Proliferating cell nuclear antigen (PCNA) {Archaeo 92.83
d1plqa2132 Proliferating cell nuclear antigen (PCNA) {Baker's 91.22
d1rwza2122 Proliferating cell nuclear antigen (PCNA) {Archaeo 86.96
>d1u7ba1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase processivity factor
domain: Proliferating cell nuclear antigen (PCNA)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.3e-07  Score=73.48  Aligned_cols=115  Identities=13%  Similarity=0.194  Sum_probs=95.7

Q ss_pred             eeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEeh
Q 038444            3 FKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDI   82 (300)
Q Consensus         3 FrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~   82 (300)
                      |+|+..+++   .|++++.+++++-.+|.+.++++.+++.. ..++....+-..++.+ .|++|+|+.    .+.+-+++
T Consensus         2 f~~~~~~a~---~fk~i~~~lk~l~~e~~~~~~~~Gi~iq~-mD~shv~Lv~l~L~~~-~F~~Y~~~~----~~~iGv~~   72 (126)
T d1u7ba1           2 FEARLVQGS---ILKKVLEALKDLINEACWDISSSGVNLQS-MDSSHVSLVQLTLRSE-GFDTYRCDR----NLAMGVNL   72 (126)
T ss_dssp             EEEEESCTH---HHHHHHHHHHTTCSEEEEEEETTEEEEEE-ECTTSSEEEEEEEEGG-GSSEEEESS----CEEEEEEH
T ss_pred             eEEEEccHH---HHHHHHHHHHHHhceEEEEEcCCeEEEEE-ECCCcEEEEEEEECHH-HCceeEEcC----CEEEEEEH
Confidence            899998873   46999999999999999999999999975 4566788899999998 999999985    68899999


Q ss_pred             HHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECc--eeEEEEEeec
Q 038444           83 SLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGY--KSAVIQDVPI  145 (300)
Q Consensus        83 ~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~--~~~v~hdvPV  145 (300)
                      +.|.++|+.+.+           .+.++|+.....        -.|.+.+++.  ++.....+|.
T Consensus        73 ~~l~kIlk~~~~-----------~d~l~l~~~~~~--------d~l~i~~~~~~~~~~~~f~l~L  118 (126)
T d1u7ba1          73 TSMSKILKCAGN-----------EDIITLRAEDNA--------DTLALVFEAPNQEKVSDYEMKL  118 (126)
T ss_dssp             HHHHHHHTTSCT-----------TCEEEEEECTTC--------SEEEEEEECTTSSCEEEEEEEC
T ss_pred             HHHHHHHhhcCC-----------CCEEEEEEeCCC--------CEEEEEEEcCCCCEEEEEEEEc
Confidence            999999999987           688888775432        4777877754  3556677776
>d1plqa1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iz5a1 d.131.1.2 (A:2-120) Proliferating cell nuclear antigen (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ud9a1 d.131.1.2 (A:1-119) Proliferating cell nuclear antigen (PCNA) {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1plqa2 d.131.1.2 (A:127-258) Proliferating cell nuclear antigen (PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u7ba2 d.131.1.2 (A:127-255) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwza2 d.131.1.2 (A:123-244) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ud9a2 d.131.1.2 (A:127-245) Proliferating cell nuclear antigen (PCNA) {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1ud9a2 d.131.1.2 (A:127-245) Proliferating cell nuclear antigen (PCNA) {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1u7ba2 d.131.1.2 (A:127-255) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1plqa2 d.131.1.2 (A:127-258) Proliferating cell nuclear antigen (PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rwza2 d.131.1.2 (A:123-244) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure