Citrus Sinensis ID: 038468
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 458 | ||||||
| 225440328 | 502 | PREDICTED: uncharacterized protein LOC10 | 0.960 | 0.876 | 0.889 | 0.0 | |
| 255573625 | 502 | conserved hypothetical protein [Ricinus | 0.960 | 0.876 | 0.882 | 0.0 | |
| 356548131 | 503 | PREDICTED: uncharacterized protein LOC10 | 0.960 | 0.874 | 0.853 | 0.0 | |
| 356537299 | 513 | PREDICTED: uncharacterized protein LOC10 | 0.960 | 0.857 | 0.832 | 0.0 | |
| 449448641 | 502 | PREDICTED: uncharacterized protein LOC10 | 0.958 | 0.874 | 0.864 | 0.0 | |
| 356572331 | 497 | PREDICTED: uncharacterized protein LOC10 | 0.947 | 0.873 | 0.812 | 0.0 | |
| 312283465 | 504 | unnamed protein product [Thellungiella h | 0.956 | 0.869 | 0.809 | 0.0 | |
| 297827267 | 494 | sodium-and lithium-tolerant 1 [Arabidops | 0.932 | 0.864 | 0.821 | 0.0 | |
| 18404463 | 494 | protein sodium-and lithium-tolerant 1 [A | 0.932 | 0.864 | 0.814 | 0.0 | |
| 11611667 | 501 | SLT1 protein [Nicotiana tabacum] | 0.947 | 0.866 | 0.804 | 0.0 |
| >gi|225440328|ref|XP_002263786.1| PREDICTED: uncharacterized protein LOC100254432 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/442 (88%), Positives = 412/442 (93%), Gaps = 2/442 (0%)
Query: 1 MGDSFLTALSMENHHPSTLLSMDSSASSHDELDLEMNRQVILPRPPDINLPLSAERSPPP 60
MGDS LTALSMENHHPSTLLSMDSSASSH++LDLEMNRQ+IL RPPDINLPLSAERSPPP
Sbjct: 1 MGDSLLTALSMENHHPSTLLSMDSSASSHEDLDLEMNRQIILTRPPDINLPLSAERSPPP 60
Query: 61 QSWNLDTCDILDVGLSSQGYEPESYLNIPKVGRKCAKRVDSIWGAWFFFSFYFKPALNEK 120
WN D CDIL+VGL+ Q YE ES+L IPK GRKCAKRVD IWGAWFFFSFYFKPALNEK
Sbjct: 61 PPWNSDQCDILEVGLAPQIYETESFLTIPKAGRKCAKRVDCIWGAWFFFSFYFKPALNEK 120
Query: 121 SKAKIIRDSNGVSGFDKSDLKLDVFMVQHDMENIYMWVFKERPENALGKMQLRSYMNGHS 180
SKAKIIRDSNGVSGFDKSDLKL+VFMVQHDMEN+YMWVFKERPENALGKMQLRSYMNGHS
Sbjct: 121 SKAKIIRDSNGVSGFDKSDLKLEVFMVQHDMENMYMWVFKERPENALGKMQLRSYMNGHS 180
Query: 181 RQGERPFPFSVDKGFVRSHRMQRKHYRGLSNPQCVHGIEVVSSPNLMVLDEEERKRWMEL 240
RQGER FPFSVDKGFVRSHRMQRKHYRGLSNPQCVHGIEVV SPNL+ +DEEERKRWMEL
Sbjct: 181 RQGERLFPFSVDKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNLIGVDEEERKRWMEL 240
Query: 241 TGRDLNFTIPPEASDFSSWRNLPNTDFELERPPPPIKSASNSQSKKLLNGSGLNLSTQPS 300
TGRD+NF+IPPEASDFSSWRNLPNTDFELERPPPP+KS SNS SKKLLNGSGLNLSTQPS
Sbjct: 241 TGRDMNFSIPPEASDFSSWRNLPNTDFELERPPPPVKSNSNSHSKKLLNGSGLNLSTQPS 300
Query: 301 SHSNGVAMDLSP-SSKRKKDFFPHGNDDECYLAVNQPSDRIADMEIHPYEPPHWLNDFSG 359
+HSNG MDLSP SSKR+KDFFPHGNDD+CYLAVN PSDR+ DMEIHP EPP WLNDFSG
Sbjct: 301 NHSNGDGMDLSPVSSKRRKDFFPHGNDDDCYLAVNPPSDRVQDMEIHPNEPP-WLNDFSG 359
Query: 360 VMKNVYGPSTAAKAIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTSGMP 419
VM+NVYGP TAAK IYED EGYLIIISLPFVDLQRVKVSWRNTLT GIIKVSCVSTS P
Sbjct: 360 VMRNVYGPVTAAKTIYEDVEGYLIIISLPFVDLQRVKVSWRNTLTHGIIKVSCVSTSRRP 419
Query: 420 FIKRHDRTFKLTDPASEHCPPG 441
FIKRHDRTFKLTDP+SEHCPPG
Sbjct: 420 FIKRHDRTFKLTDPSSEHCPPG 441
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255573625|ref|XP_002527735.1| conserved hypothetical protein [Ricinus communis] gi|223532876|gb|EEF34648.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356548131|ref|XP_003542457.1| PREDICTED: uncharacterized protein LOC100804386 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356537299|ref|XP_003537166.1| PREDICTED: uncharacterized protein LOC100787547 isoform 1 [Glycine max] gi|356537301|ref|XP_003537167.1| PREDICTED: uncharacterized protein LOC100787547 isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449448641|ref|XP_004142074.1| PREDICTED: uncharacterized protein LOC101215206 isoform 1 [Cucumis sativus] gi|449448643|ref|XP_004142075.1| PREDICTED: uncharacterized protein LOC101215206 isoform 2 [Cucumis sativus] gi|449502560|ref|XP_004161677.1| PREDICTED: uncharacterized LOC101215206 isoform 1 [Cucumis sativus] gi|449502564|ref|XP_004161678.1| PREDICTED: uncharacterized LOC101215206 isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356572331|ref|XP_003554322.1| PREDICTED: uncharacterized protein LOC100778843 [Glycine max] | Back alignment and taxonomy information |
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| >gi|312283465|dbj|BAJ34598.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
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| >gi|297827267|ref|XP_002881516.1| sodium-and lithium-tolerant 1 [Arabidopsis lyrata subsp. lyrata] gi|297327355|gb|EFH57775.1| sodium-and lithium-tolerant 1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|18404463|ref|NP_565864.1| protein sodium-and lithium-tolerant 1 [Arabidopsis thaliana] gi|3236240|gb|AAC23628.1| expressed protein [Arabidopsis thaliana] gi|11611669|gb|AAG39003.1| SLT1 protein [Arabidopsis thaliana] gi|15451174|gb|AAK96858.1| Unknown protein [Arabidopsis thaliana] gi|20148359|gb|AAM10070.1| unknown protein [Arabidopsis thaliana] gi|330254325|gb|AEC09419.1| protein sodium-and lithium-tolerant 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|11611667|gb|AAG39002.1|AF213399_1 SLT1 protein [Nicotiana tabacum] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 458 | ||||||
| TAIR|locus:2040721 | 494 | SLT1 "AT2G37570" [Arabidopsis | 0.934 | 0.866 | 0.786 | 2.1e-187 | |
| TAIR|locus:2101227 | 489 | FYD [Arabidopsis thaliana (tax | 0.945 | 0.885 | 0.656 | 9.9e-158 | |
| TAIR|locus:2181803 | 508 | AT5G02480 "AT5G02480" [Arabido | 0.943 | 0.850 | 0.644 | 1.8e-156 |
| TAIR|locus:2040721 SLT1 "AT2G37570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1817 (644.7 bits), Expect = 2.1e-187, P = 2.1e-187
Identities = 343/436 (78%), Positives = 373/436 (85%)
Query: 11 MENHHPXXXXXXXXXXXXHDELDLEMN--RQVILPRPPDINLPLSAERSPPPQSWNLDTC 68
MENHHP H+ELDLEMN RQ +L PPDINLPLSAERSPPP WNLD C
Sbjct: 1 MENHHPSTLLSMDSSASSHEELDLEMNNNRQSLLSGPPDINLPLSAERSPPPPPWNLDAC 60
Query: 69 DILDVGLSSQGYEPESYLNI-PKVGRKCAKRVDSIWGAWFFFSFYFKPALNEKSKAKIIR 127
DILDVGL SQ YE E+Y+++ PKVGRKCAKRVDSIWGAWFFFSFYFKPALNEKSKAKI+R
Sbjct: 61 DILDVGLGSQAYETENYMSVVPKVGRKCAKRVDSIWGAWFFFSFYFKPALNEKSKAKIVR 120
Query: 128 DSNGVSGFDKSDLKLDVFMVQHDMENIYMWVFKERPENALGKMQLRSYMNGHSRQGERPF 187
DSNG+SGFDKSDLKLDVF+VQHDMEN+YMWVFKERPENALGKMQLRSYMNGHSRQG+R F
Sbjct: 121 DSNGISGFDKSDLKLDVFLVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRQGDRLF 180
Query: 188 PFSVDKGFVRSHRMQRKHYRGLSNPQCVHGIEVVSSPNLMVLDEEERKRWMELTGRDLNF 247
PFSV+KGFVRSHRMQRKHYRGLSNPQCVHGIE+V PNL LDEEERKRWMELTGRDLNF
Sbjct: 181 PFSVEKGFVRSHRMQRKHYRGLSNPQCVHGIELVPLPNLTCLDEEERKRWMELTGRDLNF 240
Query: 248 TIPPEASDFSSWRNLPNTDFELERPPPPIKSASNSQSKKLLNGSGLNLSTQPSSHSNGVA 307
TIPPEASDF SWRNLPNTDFELERP P +K+ + + SKKLLNGSGLNLSTQPS+HSNG A
Sbjct: 241 TIPPEASDFGSWRNLPNTDFELERPTPSLKNPTANHSKKLLNGSGLNLSTQPSNHSNGEA 300
Query: 308 MDLSPSS-KRKKDFFPHG-NDDECYLAVNQPSDRIADMEIHPYEPPHWLNDFSGVMKNVY 365
DLSPSS K++KD F +G +++EC L VN P + +E H E P W N+F+G MKNVY
Sbjct: 301 TDLSPSSHKKRKDLFSNGIHEEECCLTVN-PQPPV--IEAHQNELPTWSNEFTGAMKNVY 357
Query: 366 GPSTAAKAIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTSGMPFIKRHD 425
GP TAAK IYEDEEGYLIIISLPFVDL VKVSWRNTLT GIIKVSC+STS +PFIKRHD
Sbjct: 358 GPVTAAKTIYEDEEGYLIIISLPFVDLNSVKVSWRNTLTHGIIKVSCLSTSRVPFIKRHD 417
Query: 426 RTFKLTDPASEHCPPG 441
RTFKLTD ASEHCPPG
Sbjct: 418 RTFKLTDSASEHCPPG 433
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| TAIR|locus:2101227 FYD [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2181803 AT5G02480 "AT5G02480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00021302001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (497 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 458 | |||
| cd06470 | 90 | ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun | 98.68 | |
| PRK11597 | 142 | heat shock chaperone IbpB; Provisional | 98.59 | |
| cd06471 | 93 | ACD_LpsHSP_like Group of bacterial proteins contai | 98.57 | |
| COG0071 | 146 | IbpA Molecular chaperone (small heat shock protein | 98.57 | |
| PRK10743 | 137 | heat shock protein IbpA; Provisional | 98.56 | |
| cd06475 | 86 | ACD_HspB1_like Alpha crystallin domain (ACD) found | 98.54 | |
| cd06472 | 92 | ACD_ScHsp26_like Alpha crystallin domain (ACD) fou | 98.52 | |
| cd06479 | 81 | ACD_HspB7_like Alpha crystallin domain (ACD) found | 98.45 | |
| cd06497 | 86 | ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai | 98.29 | |
| PF00011 | 102 | HSP20: Hsp20/alpha crystallin family This prints e | 98.25 | |
| cd06464 | 88 | ACD_sHsps-like Alpha-crystallin domain (ACD) of al | 98.21 | |
| cd06477 | 83 | ACD_HspB3_Like Alpha crystallin domain (ACD) found | 98.13 | |
| cd06478 | 83 | ACD_HspB4-5-6 Alpha-crystallin domain found in alp | 98.07 | |
| cd06482 | 87 | ACD_HspB10 Alpha crystallin domain (ACD) found in | 97.94 | |
| cd06498 | 84 | ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai | 97.9 | |
| cd06476 | 83 | ACD_HspB2_like Alpha crystallin domain (ACD) found | 97.73 | |
| cd06526 | 83 | metazoan_ACD Alpha-crystallin domain (ACD) of meta | 97.73 | |
| cd06481 | 87 | ACD_HspB9_like Alpha crystallin domain (ACD) found | 97.57 | |
| cd00298 | 80 | ACD_sHsps_p23-like This domain family includes the | 96.88 | |
| KOG0710 | 196 | consensus Molecular chaperone (small heat-shock pr | 96.25 | |
| cd06480 | 91 | ACD_HspB8_like Alpha-crystallin domain (ACD) found | 96.16 | |
| cd06469 | 78 | p23_DYX1C1_like p23_like domain found in proteins | 94.35 | |
| PF05455 | 177 | GvpH: GvpH; InterPro: IPR008633 This family consis | 92.85 | |
| cd06463 | 84 | p23_like Proteins containing this p23_like domain | 90.69 | |
| cd06466 | 84 | p23_CS_SGT1_like p23_like domain similar to the C- | 87.79 | |
| KOG3591 | 173 | consensus Alpha crystallins [Posttranslational mod | 80.45 |
| >cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins | Back alignment and domain information |
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Probab=98.68 E-value=3.8e-08 Score=80.93 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=48.0
Q ss_pred cceeeEEc-CceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEccCCC----------ceeecCceeeec
Q 038468 370 AAKAIYED-EEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTSGMP----------FIKRHDRTFKLT 431 (458)
Q Consensus 370 paVDI~Ed-EdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGesttg~~----------~ikr~~r~Fkm~ 431 (458)
|++||+|+ +++|.+.|+|||+++++++|+++ ++.|+|+|+++.... ...+..|+|.|-
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~----~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP 69 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVE----NNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLA 69 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECC
Confidence 57999997 59999999999999999999999 999999999975542 134456666665
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IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6 |
| >PRK11597 heat shock chaperone IbpB; Provisional | Back alignment and domain information |
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| >cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 | Back alignment and domain information |
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| >COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >PRK10743 heat shock protein IbpA; Provisional | Back alignment and domain information |
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| >cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins | Back alignment and domain information |
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| >cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins | Back alignment and domain information |
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| >cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins | Back alignment and domain information |
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| >cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) | Back alignment and domain information |
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| >PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry | Back alignment and domain information |
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| >cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) | Back alignment and domain information |
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| >cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins | Back alignment and domain information |
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| >cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 | Back alignment and domain information |
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| >cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins | Back alignment and domain information |
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| >cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) | Back alignment and domain information |
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| >cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins | Back alignment and domain information |
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| >cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) | Back alignment and domain information |
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| >cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins | Back alignment and domain information |
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| >cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins | Back alignment and domain information |
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| >KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21 | Back alignment and domain information |
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| >cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1 | Back alignment and domain information |
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| >PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [] | Back alignment and domain information |
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| >cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 | Back alignment and domain information |
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| >cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) | Back alignment and domain information |
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| >KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 458 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Score = 54.9 bits (131), Expect = 4e-08
Identities = 54/334 (16%), Positives = 94/334 (28%), Gaps = 113/334 (33%)
Query: 99 VDSIWGAWFFFSFYF----KPALNEKSKAKIIRDSNGVS-----GFDKSDLKLDV---FM 146
D ++ F+ Y +P L + +R + V G K+ + LDV +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 147 VQHDMEN-IYMWV---FKERPENALGKMQLRSYM---NGHSR--QGER-PFPFSVDKGFV 196
VQ M+ I+ W+ PE L +Q Y N SR + +
Sbjct: 176 VQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 197 RSHRMQRKHYRGL------SNP--------QC-----------------VHGIEVVSSPN 225
R + + L N C + +
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 226 LMVLDEEERK----RWMELTGRDLNFTIPPEASDFS---------SWRNLPNT-DFELER 271
M L +E K ++++ +DL P E + S R+ T D
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDL----PREVLTTNPRRLSIIAESIRDGLATWDN---- 346
Query: 272 PPPPIKSASNSQSKKLLNGSGLNLSTQPSSHSNGVAMDLSPSSKRK--KDF--FPHGNDD 327
K + + ++ S LN L P+ RK FP
Sbjct: 347 ----WKHVNCDKLTTIIESS-LN--------------VLEPAEYRKMFDRLSVFP---PS 384
Query: 328 ECYLAVNQPSDRIA----DMEIHPYEPPHWLNDF 357
+ P+ ++ D+ + +N
Sbjct: 385 -----AHIPTILLSLIWFDVI--KSDVMVVVNKL 411
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| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 458 | |||
| 4fei_A | 102 | Heat shock protein-related protein; stress respons | 98.94 | |
| 3gla_A | 100 | Low molecular weight heat shock protein; HSPA, SHP | 98.93 | |
| 2wj5_A | 101 | Heat shock protein beta-6; chaperone, disulfide bo | 98.69 | |
| 3aab_A | 123 | Putative uncharacterized protein ST1653; alpha-cry | 98.57 | |
| 4eld_A | 161 | MJ16.5-P1, small heat shock protein HSP16.5; chape | 98.57 | |
| 3l1e_A | 106 | Alpha-crystallin A chain; lens transparency, polyd | 98.55 | |
| 1gme_A | 151 | Heat shock protein 16.9B; small heat shock protein | 98.5 | |
| 3q9p_A | 85 | Heat shock protein beta-1; alpha-crystallin domain | 98.35 | |
| 2klr_A | 175 | Alpha-crystallin B chain; protein, dimer, oligomer | 98.25 | |
| 2bol_A | 314 | TSP36, small heat shock protein; A-crystallin, mol | 98.22 | |
| 2y1y_A | 90 | Alpha-crystallin B chain,; small heat shock protei | 98.06 | |
| 2bol_A | 314 | TSP36, small heat shock protein; A-crystallin, mol | 97.34 | |
| 2xcm_C | 92 | SGT1-like protein, cytosolic heat shock protein 90 | 93.41 | |
| 1rl1_A | 114 | Suppressor of G2 allele of SKP1 homolog; beta sand | 93.27 |
| >4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} | Back alignment and structure |
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Probab=98.94 E-value=1.3e-09 Score=89.63 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=52.6
Q ss_pred CCcccceeeEEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEccCCCcee------ecCceeeec
Q 038468 366 GPSTAAKAIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTSGMPFIK------RHDRTFKLT 431 (458)
Q Consensus 366 Gp~~paVDI~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGesttg~~~ik------r~~r~Fkm~ 431 (458)
|.+.|++||+|++++|.|.+.|||+++++++|+++ ++.|+|+|+++....+.. +..|+|.|-
T Consensus 3 g~~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~----~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP 70 (102)
T 4fei_A 3 GPWTPAADWRDAGTHLDLLLDVPGVDAGTLALAED----GGQLTVSGERPGTEHLLRSERPSGRFVRELAFP 70 (102)
T ss_dssp EECCCCEEEEEETTEEEEEEECTTCCGGGCEEEEE----TTEEEEEEEECCCSSCSSCCSEEEEEEEEEECS
T ss_pred CcccCcEEEEEcCCEEEEEEECCCCchHhEEEEEE----CCEEEEEEEEecCCCEEEEEEeccEEEEEEECC
Confidence 78899999999999999999999999999999999 999999999975444332 455666654
|
| >3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A | Back alignment and structure |
|---|
| >2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A | Back alignment and structure |
|---|
| >4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A | Back alignment and structure |
|---|
| >3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A | Back alignment and structure |
|---|
| >1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A | Back alignment and structure |
|---|
| >3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A | Back alignment and structure |
|---|
| >2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A | Back alignment and structure |
|---|
| >2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} | Back alignment and structure |
|---|
| >2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A | Back alignment and structure |
|---|
| >2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} | Back alignment and structure |
|---|
| >2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* | Back alignment and structure |
|---|
| >1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 458 | |||
| d1shsa_ | 115 | Small heat shock protein {Archaeon Methanococcus j | 98.53 | |
| d1gmea_ | 150 | Small heat shock protein {Wheat (Triticum aestivum | 98.31 |
| >d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: HSP20-like chaperones superfamily: HSP20-like chaperones family: HSP20 domain: Small heat shock protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.53 E-value=7.2e-08 Score=78.18 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=40.8
Q ss_pred ccceeeEEcCceEEEEEecCCccCCceeEEEEEecCCCeEEEEEEEcc
Q 038468 369 TAAKAIYEDEEGYLIIISLPFVDLQRVKVSWRNTLTQGIIKVSCVSTS 416 (458)
Q Consensus 369 ~paVDI~EdEdaYlfrVSLPGVd~d~vkVS~eni~~dG~V~IsGestt 416 (458)
.+++||+|++++|.|.|+|||+++++++|+++ ++.|+|+|+++.
T Consensus 10 ~~pvdi~e~~~~~~i~~~lPG~~~edi~v~v~----~~~l~I~~~~~~ 53 (115)
T d1shsa_ 10 FMPISIIEGDQHIKVIAWLPGVNKEDIILNAV----GDTLEIRAKRSP 53 (115)
T ss_dssp CCCEEEEECSSEEEEEEECTTCCGGGEEEEEE----TTEEEEEEECCC
T ss_pred cCceEEEEcCCEEEEEEECCCCCHHHEEEEEE----CCEEEEEEEecc
Confidence 45599999999999999999999999999999 999999998763
|
| >d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} | Back information, alignment and structure |
|---|