Citrus Sinensis ID: 038471

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MDWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRGPVNAGMIRDGVSEGQFSHVLLSEMDAIRKGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGEGAGAADAGPGKGAAVRGEAASVRPLPPLSPNIKDVMFFC
Secondary Structure (PSIPRED)
ccccccccEEEEEEEEEccEEEccccccccccccccccccEEEEccEEcccccEEEEEccccEEccccccccEEEEEccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEEEccccEcccccccccccccccccccccEEcccccccccEEEHHHccHEcccccccccEEEEEccccccHHHHHHHHHHHcHEEEHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHcHcHHHcEEEEEc
Coil and Loop (DISEMBL)
MDWPAVTTYRGLVSAQQHREEIIQDLFtvqqdptrgpvnagmirdgvsegqFSHVLLSEMDairkgtsrpvhyhvlfdenkftaDNLQKLTNNLCYTltskfcfqsavppaYYAHLAAFRARYYiegegagaadagpgkgaavrgeaasvrplpplspnikdvmffc
Flexible Loop (DISEMBL)
MDWPAVTTYRGLVSAQQHREEIIQDLftvqqdptrgpVNAGMIRDGVSEGQFSHVLLSEMDAIRKGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGEGAGAADAGPGKGAAVRGEAAsvrplpplspnikdvmffc
Low Complexity Region (SEG)
MDWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRGPVNAGMIRDGVSEGQFSHVLLSEMDAIRKGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEgegagaadagpgkgaaVRGEAASVRPLPPLSPNIKDVMFFC
Disordered region (IsUnstruct)
*****VTTYRGLVSAQQHREEIIQDLFTVQ********NAGMIRDGVSEGQFSHVLLSEMDAIRKGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGE***************************************
Disordered Region (DISOPRED)
MDWPAVTTYRGLVSAQQHREEIIQD************VNAGMIRDGVSEGQFSHVLLSEMDAIRKGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARY******************************PPLSPNIKDVMFFC
Disordered Region (DISEMBL)
MDWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRGPVNAGMIRDGVSEGQFSHVLLSEMDAIRKGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGEGAG****************ASVRPLPPLSPNIKDVMFFC
Disordered Region (DISPRO)
***PAVTTYRGLVSAQQHREEIIQDLF*******RGPVNAGMIRDGVSEGQFSHVLLSEMDAIRKGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEG**********************VRPLPPLSPNIKDVMFFC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRGPVNAGMIRDGVSEGQFSHVLLSEMDAIRKGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGEGAGAADAGPGKGAAVRGEAASVRPLPPLSPNIKDVMFFC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
Q851R2	1058	Protein argonaute MEL1 OS	yes	no	0.994	0.156	0.382	1e-33
Q7Y001	1049	Protein argonaute 12 OS=O	no	no	0.976	0.155	0.363	1e-31
Q7XSA2	1118	Protein argonaute 1B OS=O	no	no	0.988	0.147	0.369	5e-30
Q9SJK3	997	Protein argonaute 5 OS=Ar	yes	no	0.988	0.165	0.344	3e-29
Q6EU14	1082	Protein argonaute 1A OS=O	no	no	0.994	0.153	0.354	7e-29
O04379	1048	Protein argonaute 1 OS=Ar	no	no	0.994	0.158	0.337	3e-28
Q9XGW1	988	Protein argonaute 10 OS=A	no	no	0.988	0.167	0.343	7e-28
Q6Z4F1	1052	Protein argonaute 14 OS=O	no	no	0.610	0.096	0.584	6e-27
Q5Z5B2	1038	Protein argonaute 1D OS=O	no	no	0.994	0.159	0.318	1e-26
Q69VD5	979	Protein argonaute PNH1 OS	no	no	0.976	0.166	0.334	1e-26

>sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/259 (38%), Positives = 118/259 (45%), Gaps = 93/259 (35%)

Query: 1    MDWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRGPVNAGMI----------------- 43
            MDWP +T YRGLVSAQ HR+EII+DLF+V +DP +  VN GMI                 
Sbjct: 801  MDWPEITKYRGLVSAQPHRQEIIEDLFSVGKDPVKV-VNGGMIRELLIAFRKKTGRRPER 859

Query: 44   ----RDGVSEGQFSHVLLSEMDAIRKGTSR-------PV--------HYHVLFDENKFTA 84
                RDGVSEGQFSHVLL EMDAIRK  +        PV        H+  LF E     
Sbjct: 860  IIFYRDGVSEGQFSHVLLHEMDAIRKACASLEEGYLPPVTFVVVQKRHHTRLFPEVHGRR 919

Query: 85   DNLQKLTN---------NLCY--------------------------------------T 97
            D   K  N          +C+                                      +
Sbjct: 920  DMTDKSGNILPGTVVDRQICHPTEFDFYLCSHAGIQGTSRPTHYHVLYDENHFTADALQS 979

Query: 98   LTSKFCFQ--------SAVPPAYYAHLAAFRARYYIEGEGA-GAADAGPGKGAAVRGEAA 148
            LT+  C+         S VPPAYYAHLAAFRARYY+EGE + G +  G    A  R    
Sbjct: 980  LTNNLCYTYARCTRAVSVVPPAYYAHLAAFRARYYVEGESSDGGSTPGSSGQAVAREGPV 1039

Query: 149  SVRPLPPLSPNIKDVMFFC 167
             VR LP +  N+KDVMF+C
Sbjct: 1040 EVRQLPKIKENVKDVMFYC 1058

Essential for the progression of premeiotic mitosis and meiosis during sporogenesis. Regulates the cell division of premeiotic germ cells, the proper modification of meiotic chromosomes, and the faithful progression of meiosis, probably via small RNA-mediated gene silencing. May be involved in histone H3 'Lys-9' demethylation in the pericentromeric region.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/256 (36%), Positives = 110/256 (42%), Gaps = 93/256 (36%)

Query: 1    MDWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRGPVNAGMI----------------- 43
            MDWP VT Y+ LVS Q HREEII +L+T  +DP +G +  GMI                 
Sbjct: 798  MDWPEVTKYKCLVSTQSHREEIISNLYTEVKDPLKGIIRGGMIRELLRSFYQETGQKPSR 857

Query: 44   ----RDGVSEGQFSHVLLSEMDAIRKGTSR-------PV--------HYHVLFDENK--- 81
                RDG+SEGQFS VLL EMDAIRK  +        PV        H+  LF EN+   
Sbjct: 858  IIFYRDGISEGQFSQVLLYEMDAIRKACASLQEGYLPPVTFVVVQKRHHTRLFPENRRDM 917

Query: 82   --------------------------------------------------FTADNLQKLT 91
                                                              F AD LQ LT
Sbjct: 918  MDRSGNILPGTVVDTMICHPSEFDFYLCSHSGIKGTSRPTHYHVLLDENGFKADTLQTLT 977

Query: 92   NNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGEGAGAADAGPGKGAAVRGEAASVR 151
             NL YT        S VPPAYYAHL AFRARYY+E E    +D G       R +  S +
Sbjct: 978  YNLSYTYARCTRAVSIVPPAYYAHLGAFRARYYMEDE---HSDQGSSSSVTTRTD-RSTK 1033

Query: 152  PLPPLSPNIKDVMFFC 167
            PLP +  N+K  MF+C
Sbjct: 1034 PLPEIKENVKRFMFYC 1049

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3

 Score =  130 bits (326), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/268 (36%), Positives = 117/268 (43%), Gaps = 103/268 (38%)

Query: 2    DWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRGPVNAGMI------------------ 43
            DWP VT Y GLVSAQ HR+E+IQDLF V QDP RG V  GMI                  
Sbjct: 852  DWPEVTKYAGLVSAQAHRQELIQDLFKVWQDPHRGTVTGGMIKELLISFKRATGQKPQRI 911

Query: 44   ---RDGVSEGQFSHVLLSEMDAIRKGTSR-------PV--------HYHVLFDENKFTAD 85
               RDGVSEGQF  VLL E+DAIRK  +        PV        H+  LF  N     
Sbjct: 912  IFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHNDQR 971

Query: 86   NLQKLTN---------NLCY--------------------------------------TL 98
             + +  N          +C+                                      TL
Sbjct: 972  TVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTL 1031

Query: 99   TSKFCFQ--------SAVPPAYYAHLAAFRARYYIEGE----GAGAADAGPGKG------ 140
            T+  C+         S VPPAYYAHLAAFRAR+Y+E E    G+ A+ A   +G      
Sbjct: 1032 TNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGAATSRGLPPGVR 1091

Query: 141  -AAVRGEAASVRPLPPLSPNIKDVMFFC 167
             A V G  A VRPLP L  N+K VMF+C
Sbjct: 1092 SARVAGNVA-VRPLPALKENVKRVMFYC 1118

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SJK3|AGO5_ARATH Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2

 Score =  127 bits (319), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/258 (34%), Positives = 110/258 (42%), Gaps = 93/258 (36%)

Query: 1   MDWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRGPVNAGMI----------------- 43
           MDWP +  YRGLVSAQ HREEIIQDL+ + QDP RG V++G+I                 
Sbjct: 742 MDWPEINKYRGLVSAQAHREEIIQDLYKLVQDPQRGLVHSGLIREHFIAFRRATGQIPQR 801

Query: 44  ----RDGVSEGQFSHVLLSEMDAIRKGTS---------------RPVHYHVLFDENKFTA 84
               RDGVSEGQFS VLL EM AIRK  +               +  H+  LF E     
Sbjct: 802 IIFYRDGVSEGQFSQVLLHEMTAIRKACNSLQENYVPRVTFVIVQKRHHTRLFPEQHGNR 861

Query: 85  DNLQKLTN---------NLCY--------------------------------------T 97
           D   K  N          +C+                                       
Sbjct: 862 DMTDKSGNIQPGTVVDTKICHPNEFDFYLNSHAGIQGTSRPAHYHVLLDENGFTADQLQM 921

Query: 98  LTSKFCFQ--------SAVPPAYYAHLAAFRARYYIEGEGAGAADAGPGKGAAVRGEAAS 149
           LT+  C+         S VPPAYYAHLAAFRARYY+E E +    +         G+  S
Sbjct: 922 LTNNLCYTYARCTKSVSIVPPAYYAHLAAFRARYYMESEMSDGGSSRSRSSTTGVGQVIS 981

Query: 150 VRPLPPLSPNIKDVMFFC 167
              LP +  N+K+VMF+C
Sbjct: 982 --QLPAIKDNVKEVMFYC 997

Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Associates with siRNAs of various sizes, from 21-24 nucleotide in length and preferentially recruits small RNAs with a 5' terminal cytosine. Probably involved in antiviral RNA silencing. Associates with siRNAs derived from cucumber mosaic virus (CMV). Targeted by the turnip yellows virus (TuYV) protein P0 (via F-box-like domain) for probable proteasome degradation and thereby inactivating AGO5 function in RNA silencing.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1

 Score =  126 bits (316), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/268 (35%), Positives = 113/268 (42%), Gaps = 102/268 (38%)

Query: 2    DWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRGPVNAGMI------------------ 43
            DWP VT Y GLVSAQ HR+E+IQDLF V +DP RG V+ GMI                  
Sbjct: 815  DWPEVTKYAGLVSAQAHRQELIQDLFKVWKDPQRGTVSGGMIRELLISFKRATGQKPQRI 874

Query: 44   ---RDGVSEGQFSHVLLSEMDAIRKGTSR-------PV--------HYHVLFDENKFTAD 85
               RDGVSEGQF  VL  E+DAIRK  +        PV        H+  LF  N     
Sbjct: 875  IFYRDGVSEGQFYQVLFYELDAIRKACASLEADYQPPVTFVVVQKRHHTRLFANNHKDQR 934

Query: 86   NLQKLTN---------NLCY--------------------------------------TL 98
             + +  N          +C+                                      TL
Sbjct: 935  TVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTL 994

Query: 99   TSKFCFQ--------SAVPPAYYAHLAAFRARYYIE---------GEGAGAADAGPGKGA 141
            T+  C+         S VPPAYYAHLAAFRAR+Y+E           GA     GP  GA
Sbjct: 995  TNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDTSDSGSMASGAHTRGGGPLPGA 1054

Query: 142  AVRGEAA--SVRPLPPLSPNIKDVMFFC 167
                 A   +VRPLP L  N+K VMF+C
Sbjct: 1055 RSTKPAGNVAVRPLPDLKENVKRVMFYC 1082

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1

 Score =  124 bits (311), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 116/267 (43%), Gaps = 101/267 (37%)

Query: 2    DWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRGPVNAGMI------------------ 43
            DWP +T Y GLV AQ HR+E+IQDLF   +DP +G V  GMI                  
Sbjct: 782  DWPEITKYAGLVCAQAHRQELIQDLFKEWKDPQKGVVTGGMIKELLIAFRRSTGHKPLRI 841

Query: 44   ---RDGVSEGQFSHVLLSEMDAIRK-------GTSRPV--------HYHVLFDENKFTAD 85
               RDGVSEGQF  VLL E+DAIRK       G   PV        H+  LF +N     
Sbjct: 842  IFYRDGVSEGQFYQVLLYELDAIRKACASLEAGYQPPVTFVVVQKRHHTRLFAQNHNDRH 901

Query: 86   NLQKLTN---------NLCY--------------------------------------TL 98
            ++ +  N          +C+                                      +L
Sbjct: 902  SVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSL 961

Query: 99   TSKFCFQ--------SAVPPAYYAHLAAFRARYYIEGEGAGAADAGPG---KGAAVRGEA 147
            T+  C+         S VPPAYYAHLAAFRAR+Y+E E + +     G   +G  + G +
Sbjct: 962  TNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGSMARGGGMAGRS 1021

Query: 148  -------ASVRPLPPLSPNIKDVMFFC 167
                   A+VRPLP L  N+K VMF+C
Sbjct: 1022 TRGPNVNAAVRPLPALKENVKRVMFYC 1048

Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Requires DRB1 for directional loading of the small RNA duplex (guide stand and passenger strand) onto RISC for passenger strand degradation. Unlike animal RISC that associates in high molecular weight complex, Arabidopsis RISC is probably composed only of the AGO1 protein and associated RNA without any other proteins. Associates mainly with miRNAs of 21 nucleotide in length and preferentially recruits small RNAs with a 5' terminal uridine. Associates with 22 nucleotide miRNAs to trigger RDR6-dependent secondary siRNAs biogenesis. This pathway amplifies silencing by using the target RNA as substrate to generate secondary siRNAs. Binds to miR168 which targets its own mRNA for repression, establishing a homeostatic regulatory loop. Involved in antiviral RNA silencing by contributing to viral RNA clearance. Is capable of targeting viral RNAs with more compact structures than AGO7 which favors less structured RNA targets. May not associate with 24 nucleotide siRNAs involved in chromatin silencing. Essential for multiple processes in development. Essential for proper development of leaves and floral organs, and formation of axillary meristems. Like AGO10, required for stem cell function and organ polarity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1

 Score =  123 bits (308), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/259 (34%), Positives = 110/259 (42%), Gaps = 94/259 (36%)

Query: 2   DWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRGPVNAGMI------------------ 43
           DWP VT Y GLV AQ HR+E+IQDL+   QDP RG V+ GMI                  
Sbjct: 731 DWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLISFRKATGQKPLRI 790

Query: 44  ---RDGVSEGQFSHVLLSEMDAIRKGTSR-------PV--------HYHVLFDENKFTAD 85
              RDGVSEGQF  VLL E+DAIRK  +        PV        H+  LF  N    +
Sbjct: 791 IFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDKN 850

Query: 86  NLQKLTN---------NLCY--------------------------------------TL 98
           +  +  N          +C+                                      +L
Sbjct: 851 STDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSL 910

Query: 99  TSKFCFQ--------SAVPPAYYAHLAAFRARYYIEGEGAGAADAGPGKGAAVRGEAAS- 149
           T+  C+         S VPPAYYAHLAAFRAR+Y+E E     +  PGK           
Sbjct: 911 TNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYLEPE-IMQDNGSPGKKNTKTTTVGDV 969

Query: 150 -VRPLPPLSPNIKDVMFFC 167
            V+PLP L  N+K VMF+C
Sbjct: 970 GVKPLPALKENVKRVMFYC 988

Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Required for reliable formation of primary and axillary shoot apical meristems. Specifies leaf adaxial identity by repressing the miR165 and miR166 microRNAs in the embryonic shoot apex, in the shoot apical meristem (SAM) and leaf. Represses the microRNA miR398 which targets CCS1 chaperone mRNAs for translational inhibition. Acts as a negative regulator of AGO1 protein level. Like AGO1, is required for stem cell function and organ polarity. Unlike AGO1, is not subjected to small RNA-mediated repression itself. Essential for multiple processes in development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z4F1|AGO14_ORYSJ Protein argonaute 14 OS=Oryza sativa subsp. japonica GN=AGO14 PE=2 SV=1

 Score =  119 bits (299), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 62/106 (58%), Positives = 73/106 (68%), Gaps = 4/106 (3%)

Query: 65   KGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYY 124
            +GTSRP HYHVL DEN+F+AD LQ LT NLCYT        S VPPAYYAHLAAFRARYY
Sbjct: 948  QGTSRPTHYHVLHDENRFSADQLQMLTYNLCYTYARCTRSVSVVPPAYYAHLAAFRARYY 1007

Query: 125  IE---GEGAGAADAGPGKGAAVRGEAASVRPLPPLSPNIKDVMFFC 167
             E    +GA +  +G G  AA  G+  +VR LP +  N+KDVMF+C
Sbjct: 1008 DEPPAMDGASSVGSG-GNQAAAGGQPPAVRRLPQIKENVKDVMFYC 1052

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5Z5B2|AGO1D_ORYSJ Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1

 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 113/264 (42%), Gaps = 98/264 (37%)

Query: 2    DWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRGPVNAGMI------------------ 43
            DWP VT Y GLVSAQ HR+E+I DL+ +  DP RGP+  GM+                  
Sbjct: 775  DWPEVTKYAGLVSAQSHRQELIDDLYNITHDPHRGPICGGMVRELLISFKRSTGQKPQRI 834

Query: 44   ---RDGVSEGQFSHVLLSEMDAIRKGTS---------------RPVHYHVLFDENKFTAD 85
               RDGVSEGQF  VLL E+DAIRK  +               +  H+  LF  N    +
Sbjct: 835  IFYRDGVSEGQFYQVLLHELDAIRKACASLEANYQPQVTFIVVQKRHHTRLFAHNHNDQN 894

Query: 86   NLQKLTN---------NLCY--------------------------------------TL 98
            ++ +  N          +C+                                      TL
Sbjct: 895  SVDRSGNILPGTVVDSKICHPTEFDFFLCSHAGIKGTSRPAHYHVLWDENNFTADALQTL 954

Query: 99   TSKFCFQ--------SAVPPAYYAHLAAFRARYYIEGEGAGAADAGPGKGAAVRGE---- 146
            T+  C+         S VPPAYYAHLAAFRAR+Y+E + + +     G+G          
Sbjct: 955  TNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMESDSSDSGSMASGRGGGSSTSRSTR 1014

Query: 147  ---AASVRPLPPLSPNIKDVMFFC 167
                 +VRPLP L  ++K+VMF+C
Sbjct: 1015 AAGGGAVRPLPALKDSVKNVMFYC 1038

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1

 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/257 (33%), Positives = 107/257 (41%), Gaps = 94/257 (36%)

Query: 2   DWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRGPVNAGMI------------------ 43
           DWP VT Y GLV AQ HR+E+IQDL+    DP RG V  GMI                  
Sbjct: 726 DWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPQRGTVTGGMIRELLISFRKATGQKPLRI 785

Query: 44  ---RDGVSEGQFSHVLLSEMDAIRKGTSR-------PV--------HYHVLFDENKFTAD 85
              RDGVSEGQF  VLL E+DAIRK  +        PV        H+  LF  N     
Sbjct: 786 IFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHKDRS 845

Query: 86  NLQKLTN---------NLCY--------------------------------------TL 98
           +  K  N          +C+                                      TL
Sbjct: 846 STDKSGNILPGTVVDSKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTL 905

Query: 99  TSKFCFQ--------SAVPPAYYAHLAAFRARYYIEGEGAGAADAGPGKGAAVRGEAASV 150
           T+  C+         S VPPAYYAHLAAFRAR+Y+E E    ++      ++      SV
Sbjct: 906 TNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPE---MSENQTTSKSSTGTNGTSV 962

Query: 151 RPLPPLSPNIKDVMFFC 167
           +PLP +   +K VMF+C
Sbjct: 963 KPLPAVKEKVKRVMFYC 979

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them (By similarity). Plays a role in the maintenance of the indeterminate state of the stem cells in the shoot apical meristem (SAM). Regulates leaf formation through vascular development and may be involved in determining the central domain of the leaf founder region.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
413932776	941	putative argonaute superfamily protein [	1.0	0.177	0.518	6e-52
224069720	850	argonaute protein group [Populus trichoc	0.994	0.195	0.404	1e-34
75149521	1058	RecName: Full=Protein argonaute MEL1; Al	0.994	0.156	0.382	5e-32
218193919	1058	hypothetical protein OsI_13926 [Oryza sa	0.994	0.156	0.382	6e-32
242032667	1067	hypothetical protein SORBIDRAFT_01g00492	1.0	0.156	0.380	1e-31
125545278	1009	hypothetical protein OsI_13041 [Oryza sa	0.976	0.161	0.371	3e-31
413923260	397	hypothetical protein ZEAMMB73_893343 [Ze	0.898	0.377	0.393	1e-30
255565533	987	eukaryotic translation initiation factor	0.598	0.101	0.631	2e-30
169788718	1107	argonaute1 [Daucus carota]	0.994	0.149	0.368	4e-30
222625570	794	hypothetical protein OsJ_12126 [Oryza sa	0.976	0.205	0.363	4e-30

>gi|413932776|gb|AFW67327.1| putative argonaute superfamily protein [Zea mays]

 Score =  208 bits (530), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 114/220 (51%), Positives = 126/220 (57%), Gaps = 53/220 (24%)

Query: 1   MDWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRG-PVNAGMIRDGVSEGQFSHVLLSE 59
           MDWP +T YRGLVSAQ HR+EII+DLFTV +DP  G  VN GMIRDGVSEGQFSHVLL E
Sbjct: 722 MDWPEITKYRGLVSAQPHRQEIIEDLFTVSKDPQMGHNVNGGMIRDGVSEGQFSHVLLHE 781

Query: 60  MDAIRK---------------------------------------------------GTS 68
           MDAIRK                                                   GTS
Sbjct: 782 MDAIRKKRHHTRLFPEVHGRRDMTDKSGNILPGTVVDQMICHPTEFDFYLCSHAGIQGTS 841

Query: 69  RPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGE 128
           RP HYHVL+DEN+FTAD LQ LTNNLCYT        S VPPAYYAHLAAFRARYY+EGE
Sbjct: 842 RPTHYHVLYDENEFTADALQSLTNNLCYTYARCTRAVSVVPPAYYAHLAAFRARYYVEGE 901

Query: 129 GA-GAADAGPGKGAAVRGEAASVRPLPPLSPNIKDVMFFC 167
            + G +  G       R     VR LP +  N+KDVMF+C
Sbjct: 902 SSDGGSTPGSSGQTVAREGPVEVRQLPKIKDNVKDVMFYC 941

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069720|ref|XP_002326400.1| argonaute protein group [Populus trichocarpa] gi|222833593|gb|EEE72070.1| argonaute protein group [Populus trichocarpa]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/242 (40%), Positives = 117/242 (48%), Gaps = 76/242 (31%)

Query: 1   MDWPAVTTYRGLVSAQQHREEIIQD--------LFTVQQDPTRGPVNAGMIRDGVSEGQF 52
           MDWP VTTYRGLVSAQ+HR+EIIQD        +   ++   + P      RDGVSEGQF
Sbjct: 610 MDWPEVTTYRGLVSAQKHRQEIIQDCAGMIRELMIAFRRTTNQKPSRIIFYRDGVSEGQF 669

Query: 53  SHVLLSEMDAIRKGTSR-------PV--------HYHVLFDENKFTAD------------ 85
           S VLL EMDAIRK  +        PV        H+  LF  N    D            
Sbjct: 670 SQVLLYEMDAIRKACASLEPNYLPPVTFIVVQKRHHTRLFATNPNQTDKSGNILPGTVVD 729

Query: 86  --------------------------------NLQKLTNNLCYTLTSKFCFQ-------- 105
                                           ++ K T +    LT+  C+         
Sbjct: 730 TKICHPSEHDFYLCSHAGIQGTSRPVHYHVLCDMNKFTADCLQMLTNNLCYTYARCTRSV 789

Query: 106 SAVPPAYYAHLAAFRARYYIEGEGAGAADAGPGKGAAVRGEAASVRPLPPLSPNIKDVMF 165
           S VPPAYYAHLAAFRARYYIEG+ A  +  G G G  VR EAA VRPLP +SPN+K+VMF
Sbjct: 790 SVVPPAYYAHLAAFRARYYIEGDIASDSGGG-GTGPPVRREAAPVRPLPAISPNVKNVMF 848

Query: 166 FC 167
           +C
Sbjct: 849 YC 850

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75149521|sp|Q851R2.1|MEL1_ORYSJ RecName: Full=Protein argonaute MEL1; AltName: Full=Protein MEIOSIS ARRESTED AT LEPTOTENE 1; Short=OsMEL1 gi|28209520|gb|AAO37538.1| putative argonaute protein [Oryza sativa Japonica Group] gi|108711587|gb|ABF99382.1| Argonaute-like protein At2g27880, putative, expressed [Oryza sativa Japonica Group] gi|157279696|dbj|BAF80153.1| ARGONAUTE family protein [Oryza sativa Japonica Group]

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/259 (38%), Positives = 118/259 (45%), Gaps = 93/259 (35%)

Query: 1    MDWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRGPVNAGMI----------------- 43
            MDWP +T YRGLVSAQ HR+EII+DLF+V +DP +  VN GMI                 
Sbjct: 801  MDWPEITKYRGLVSAQPHRQEIIEDLFSVGKDPVKV-VNGGMIRELLIAFRKKTGRRPER 859

Query: 44   ----RDGVSEGQFSHVLLSEMDAIRKGTSR-------PV--------HYHVLFDENKFTA 84
                RDGVSEGQFSHVLL EMDAIRK  +        PV        H+  LF E     
Sbjct: 860  IIFYRDGVSEGQFSHVLLHEMDAIRKACASLEEGYLPPVTFVVVQKRHHTRLFPEVHGRR 919

Query: 85   DNLQKLTN---------NLCY--------------------------------------T 97
            D   K  N          +C+                                      +
Sbjct: 920  DMTDKSGNILPGTVVDRQICHPTEFDFYLCSHAGIQGTSRPTHYHVLYDENHFTADALQS 979

Query: 98   LTSKFCFQ--------SAVPPAYYAHLAAFRARYYIEGEGA-GAADAGPGKGAAVRGEAA 148
            LT+  C+         S VPPAYYAHLAAFRARYY+EGE + G +  G    A  R    
Sbjct: 980  LTNNLCYTYARCTRAVSVVPPAYYAHLAAFRARYYVEGESSDGGSTPGSSGQAVAREGPV 1039

Query: 149  SVRPLPPLSPNIKDVMFFC 167
             VR LP +  N+KDVMF+C
Sbjct: 1040 EVRQLPKIKENVKDVMFYC 1058

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218193919|gb|EEC76346.1| hypothetical protein OsI_13926 [Oryza sativa Indica Group]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 99/259 (38%), Positives = 118/259 (45%), Gaps = 93/259 (35%)

Query: 1    MDWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRGPVNAGMI----------------- 43
            MDWP +T YRGLVSAQ HR+EII+DLF+V +DP +  VN GMI                 
Sbjct: 801  MDWPEITKYRGLVSAQPHRQEIIEDLFSVGKDPVKV-VNGGMIRELLIAFRKKTGRRPER 859

Query: 44   ----RDGVSEGQFSHVLLSEMDAIRKGTSR-------PV--------HYHVLFDENKFTA 84
                RDGVSEGQFSHVLL EMDAIRK  +        PV        H+  LF E     
Sbjct: 860  IIFYRDGVSEGQFSHVLLHEMDAIRKACASLEEGYLPPVTFVVVQKRHHTRLFPEVHGRR 919

Query: 85   DNLQKLTN---------NLCY--------------------------------------T 97
            D   K  N          +C+                                      +
Sbjct: 920  DMTDKSGNILPGTVVDRQICHPTEFDFYLCSHAGIQGTSRPTHYHVLYDENHFTADALQS 979

Query: 98   LTSKFCFQ--------SAVPPAYYAHLAAFRARYYIEGEGA-GAADAGPGKGAAVRGEAA 148
            LT+  C+         S VPPAYYAHLAAFRARYY+EGE + G +  G    A  R    
Sbjct: 980  LTNNLCYTYARCTRAVSVVPPAYYAHLAAFRARYYVEGESSDGGSTPGSSGQAVAREGPV 1039

Query: 149  SVRPLPPLSPNIKDVMFFC 167
             VR LP +  N+KDVMF+C
Sbjct: 1040 EVRQLPKIKENVKDVMFYC 1058

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242032667|ref|XP_002463728.1| hypothetical protein SORBIDRAFT_01g004920 [Sorghum bicolor] gi|241917582|gb|EER90726.1| hypothetical protein SORBIDRAFT_01g004920 [Sorghum bicolor]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/260 (38%), Positives = 117/260 (45%), Gaps = 93/260 (35%)

Query: 1    MDWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRG-PVNAGMI---------------- 43
            MDWP +T YRGLVSAQ HR+EII+DLFTV +D  +G  VN GMI                
Sbjct: 808  MDWPEITKYRGLVSAQPHRQEIIEDLFTVTKDLQKGHSVNGGMIRELLIAFRRKTNRRPE 867

Query: 44   -----RDGVSEGQFSHVLLSEMDAIRKGTSR-------PV--------HYHVLFDENKFT 83
                 RDGVSEGQFSHVLL EMDAIRK  +        PV        H+  LF E    
Sbjct: 868  RIIFYRDGVSEGQFSHVLLHEMDAIRKACASLEEGYLPPVTFVVVQKRHHTRLFPEVHGR 927

Query: 84   ADNLQKLTN---------NLCY-------------------------------------- 96
             D   K  N          +C+                                      
Sbjct: 928  RDMTDKSGNILPGTVVDQQICHPTEFDFYLCSHAGIQGTSRPTHYHVLYDENHFTADALQ 987

Query: 97   TLTSKFCFQ--------SAVPPAYYAHLAAFRARYYIEGEGA-GAADAGPGKGAAVRGEA 147
            +LT+  C+         S VPPAYYAHLAAFRARYY+EGE + G +  G       R   
Sbjct: 988  SLTNNLCYTYARCTRAVSVVPPAYYAHLAAFRARYYVEGESSDGGSTPGSSGQTVAREGP 1047

Query: 148  ASVRPLPPLSPNIKDVMFFC 167
              VR LP +  N+KDVMF+C
Sbjct: 1048 VEVRQLPKIKDNVKDVMFYC 1067

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125545278|gb|EAY91417.1| hypothetical protein OsI_13041 [Oryza sativa Indica Group]

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/256 (37%), Positives = 111/256 (43%), Gaps = 93/256 (36%)

Query: 1    MDWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRGPVNAGMI----------------- 43
            MDWP VT Y+ LVS Q HREEII +L+T  +DP +G +  GMI                 
Sbjct: 758  MDWPEVTKYKCLVSTQSHREEIISNLYTEVKDPLKGIIRGGMIRELLRSFYQETGQKPSR 817

Query: 44   ----RDGVSEGQFSHVLLSEMDAIRKGTSR-------PV--------HYHVLFDENK--- 81
                RDGVSEGQFS VLL EMDAIRK  +        PV        H+  LF EN+   
Sbjct: 818  IIFYRDGVSEGQFSQVLLYEMDAIRKACASLQEGYLPPVTFIVVQKRHHTRLFPENRRDM 877

Query: 82   --------------------------------------------------FTADNLQKLT 91
                                                              F AD LQ LT
Sbjct: 878  MDRSGNILPGTVVDTMICHPSEFDFYLCSHSGIKGTSRPTHYHVLLDENGFKADTLQTLT 937

Query: 92   NNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGEGAGAADAGPGKGAAVRGEAASVR 151
             NLCYT        S VPPAYYAHL AFRARYY+E E    +D G       R +  S +
Sbjct: 938  YNLCYTYARCTRAVSIVPPAYYAHLGAFRARYYMEDE---HSDQGSSSSVTTRTD-RSTK 993

Query: 152  PLPPLSPNIKDVMFFC 167
            PLP +  N+K  MF+C
Sbjct: 994  PLPEIKENVKRFMFYC 1009

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413923260|gb|AFW63192.1| hypothetical protein ZEAMMB73_893343 [Zea mays]

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/239 (39%), Positives = 104/239 (43%), Gaps = 89/239 (37%)

Query: 2   DWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRGPVNAGMI------------------ 43
           DWP VT Y GLV AQ HR+E+IQDLF V QDP RG V+ GMI                  
Sbjct: 124 DWPEVTKYVGLVIAQAHRQELIQDLFKVWQDPKRGTVSGGMIRELLISFWRATGQKPKRI 183

Query: 44  ---RDGVSEGQFSHVLLSEMDAIRK----------------------------------- 65
              RDGVSEGQF  VLL E+DAIRK                                   
Sbjct: 184 IFYRDGVSEGQFYQVLLYELDAIRKKRHHTRLFANNHNDNRAVDKSGNILPGTVVDSKIC 243

Query: 66  ----------------GTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVP 109
                           GTSRP HYHVL+DEN FT D LQ LTNNLCYT     C +S   
Sbjct: 244 HPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTTDGLQTLTNNLCYTYAR--CTRSVS- 300

Query: 110 PAYYAHLAAFRARYYIE---GEGAGAADAGPGKGAAVRGEA----ASVRPLPPLSPNIK 161
                    FRAR+Y+E    +    A  GP  G      A      VRPLP L  N+K
Sbjct: 301 -------IVFRARFYMEPDTSDSGSMASRGPPLGGRHTKAAGVGNVDVRPLPALKENVK 352

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565533|ref|XP_002523757.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223537061|gb|EEF38697.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis]

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/103 (63%), Positives = 74/103 (71%), Gaps = 3/103 (2%)

Query: 65  KGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYY 124
           +GTSRP HYHVL+DEN FTADNLQ LTNNLCYT        S VPPAYYAHLAAFRARYY
Sbjct: 888 QGTSRPTHYHVLYDENHFTADNLQVLTNNLCYTFARCTRSVSIVPPAYYAHLAAFRARYY 947

Query: 125 IEGEGAGAADAGPGKGAAVRGEAASVRPLPPLSPNIKDVMFFC 167
           IEGE    +D G   G +  G +  V+PLP +  N+KDVMF+C
Sbjct: 948 IEGE---MSDGGSTSGKSTTGRSKEVQPLPVIKDNVKDVMFYC 987

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|169788718|dbj|BAG12806.1| argonaute1 [Daucus carota]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/266 (36%), Positives = 118/266 (44%), Gaps = 100/266 (37%)

Query: 2    DWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRGPVNAGMI------------------ 43
            DWP VT Y GLV AQ HR+EIIQDL+T  QDP +GPV+ GMI                  
Sbjct: 842  DWPEVTKYSGLVCAQAHRQEIIQDLYTTWQDPNKGPVHGGMIKELLMSFRRATGQKPQRI 901

Query: 44   ---RDGVSEGQFSHVLLSEMDAIRKGTSR-------PV--------HYHVLFDENKFTAD 85
               RDGVSEGQF  VLL E+DAIRK  +        PV        H+  LF  N    +
Sbjct: 902  IFYRDGVSEGQFYQVLLYELDAIRKACAALEPNYQPPVTFVVVQKRHHTRLFANNHRDRN 961

Query: 86   NLQKLTN---------NLCY--------------------------------------TL 98
             + +  N          +C+                                      +L
Sbjct: 962  QVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFSADGLQSL 1021

Query: 99   TSKFCFQ--------SAVPPAYYAHLAAFRARYYIE------GEGAGAADAGPGKGAAVR 144
            T+  C+         S VPPAYYAHLAAFRAR+Y+E      G  A  A AG G GA   
Sbjct: 1022 TNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDTSDTGSTATGAPAGRGMGAGRS 1081

Query: 145  GEA---ASVRPLPPLSPNIKDVMFFC 167
              A   A+VRPLP L  N+K VMF+C
Sbjct: 1082 TRAPVNAAVRPLPALKENVKRVMFYC 1107

Source: Daucus carota

Species: Daucus carota

Genus: Daucus

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222625570|gb|EEE59702.1| hypothetical protein OsJ_12126 [Oryza sativa Japonica Group]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/256 (36%), Positives = 110/256 (42%), Gaps = 93/256 (36%)

Query: 1   MDWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRGPVNAGMI----------------- 43
           MDWP VT Y+ LVS Q HREEII +L+T  +DP +G +  GMI                 
Sbjct: 543 MDWPEVTKYKCLVSTQSHREEIISNLYTEVKDPLKGIIRGGMIRELLRSFYQETGQKPSR 602

Query: 44  ----RDGVSEGQFSHVLLSEMDAIRKGTSR-------PV--------HYHVLFDENK--- 81
               RDG+SEGQFS VLL EMDAIRK  +        PV        H+  LF EN+   
Sbjct: 603 IIFYRDGISEGQFSQVLLYEMDAIRKACASLQEGYLPPVTFVVVQKRHHTRLFPENRRDM 662

Query: 82  --------------------------------------------------FTADNLQKLT 91
                                                             F AD LQ LT
Sbjct: 663 MDRSGNILPGTVVDTMICHPSEFDFYLCSHSGIKGTSRPTHYHVLLDENGFKADTLQTLT 722

Query: 92  NNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGEGAGAADAGPGKGAAVRGEAASVR 151
            NL YT        S VPPAYYAHL AFRARYY+E E    +D G       R +  S +
Sbjct: 723 YNLSYTYARCTRAVSIVPPAYYAHLGAFRARYYMEDE---HSDQGSSSSVTTRTD-RSTK 778

Query: 152 PLPPLSPNIKDVMFFC 167
           PLP +  N+K  MF+C
Sbjct: 779 PLPEIKENVKRFMFYC 794

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
UNIPROTKB|Q851R2	1058	MEL1 "Protein argonaute MEL1"	0.616	0.097	0.567	7.2e-39
TAIR|locus:2170897	988	AGO10 "ARGONAUTE 10" [Arabidop	0.610	0.103	0.533	2.1e-36
UNIPROTKB|Q69VD5	979	PHN1 "Protein argonaute PNH1"	0.598	0.102	0.524	2.9e-35
UNIPROTKB|Q75HC2	1048	AGO7 "Protein argonaute 7" [Or	0.556	0.088	0.475	5.5e-26
TAIR|locus:2057851	997	AGO5 "ARGONAUTE 5" [Arabidopsi	0.604	0.101	0.543	4.8e-23
UNIPROTKB|F1PQZ7	813	EIF2C2 "Uncharacterized protei	0.353	0.072	0.587	1.4e-22
TAIR|locus:2007111	990	AGO7 "ARGONAUTE7" [Arabidopsis	0.784	0.132	0.435	1.6e-22
UNIPROTKB|O77503	840	EIF2C2 "Protein argonaute-2" [	0.353	0.070	0.587	5.3e-22
UNIPROTKB|F1NL39	856	LOC100858102 "Uncharacterized	0.353	0.068	0.587	5.6e-22
UNIPROTKB|Q9UKV8	859	EIF2C2 "Protein argonaute-2" [	0.353	0.068	0.587	5.6e-22

UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 297 (109.6 bits), Expect = 7.2e-39, Sum P(2) = 7.2e-39
 Identities = 59/104 (56%), Positives = 65/104 (62%)

Query:    65 KGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYY 124
             +GTSRP HYHVL+DEN FTAD LQ LTNNLCYT        S VPPAYYAHLAAFRARYY
Sbjct:   955 QGTSRPTHYHVLYDENHFTADALQSLTNNLCYTYARCTRAVSVVPPAYYAHLAAFRARYY 1014

Query:   125 IEXXXXXXXXXXXXXXXXVRGEA-ASVRPLPPLSPNIKDVMFFC 167
             +E                V  E    VR LP +  N+KDVMF+C
Sbjct:  1015 VEGESSDGGSTPGSSGQAVAREGPVEVRQLPKIKENVKDVMFYC 1058

GO:0005730 "nucleolus" evidence=IMP

GO:0005731 "nucleolus organizer region" evidence=IMP

GO:0005737 "cytoplasm" evidence=RCA

GO:0007140 "male meiosis" evidence=IMP

GO:0007143 "female meiosis" evidence=IMP

GO:0009561 "megagametogenesis" evidence=IMP

GO:0033169 "histone H3-K9 demethylation" evidence=IDA

GO:0035197 "siRNA binding" evidence=ISS

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
 Identities = 56/105 (53%), Positives = 65/105 (61%)

Query:    65 KGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYY 124
             +GTSRP HYHVL+DEN FTAD +Q LTNNLCYT        S VPPAYYAHLAAFRAR+Y
Sbjct:   885 QGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY 944

Query:   125 IEXXXXXXXXX--XXXXXXXVRGEAASVRPLPPLSPNIKDVMFFC 167
             +E                    G+   V+PLP L  N+K VMF+C
Sbjct:   945 LEPEIMQDNGSPGKKNTKTTTVGDVG-VKPLPALKENVKRVMFYC 988

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM;ISS

GO:0035019 "somatic stem cell maintenance" evidence=IMP

GO:0010586 "miRNA metabolic process" evidence=IMP

GO:0035198 "miRNA binding" evidence=IDA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 274 (101.5 bits), Expect = 2.9e-35, Sum P(2) = 2.9e-35
 Identities = 54/103 (52%), Positives = 63/103 (61%)

Query:    65 KGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYY 124
             +GTSRP HYHVL+DEN FTAD +Q LTNNLCYT        S VPPAYYAHLAAFRAR+Y
Sbjct:   880 QGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFY 939

Query:   125 IEXXXXXXXXXXXXXXXXVRGEAASVRPLPPLSPNIKDVMFFC 167
             +E                      SV+PLP +   +K VMF+C
Sbjct:   940 MEPEMSENQTTSKSSTGT---NGTSVKPLPAVKEKVKRVMFYC 979

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0006413 "translational initiation" evidence=ISS

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

UNIPROTKB|Q75HC2 AGO7 "Protein argonaute 7" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 230 (86.0 bits), Expect = 5.5e-26, Sum P(2) = 5.5e-26
 Identities = 49/103 (47%), Positives = 59/103 (57%)

Query:    65 KGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYY 124
             KGTSRP HYHVL+DEN F +D +Q+L +NLCYT        S VPPAYYAHLAA+R R Y
Sbjct:   956 KGTSRPTHYHVLWDENNFRSDEVQQLIHNLCYTFARCTRPVSLVPPAYYAHLAAYRGRLY 1015

Query:   125 IEXXXXXXXXXXXXXXXXVRGEAASVRPLPPLSPNIKDVMFFC 167
             +E                 R       PLP L  N+K +MF+C
Sbjct:  1016 LERSDTTMY----------RVSPLQTVPLPKLRDNVKRLMFYC 1048

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IMP

GO:0016246 "RNA interference" evidence=IMP

TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 56/103 (54%), Positives = 63/103 (61%)

Query:    65 KGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYY 124
             +GTSRP HYHVL DEN FTAD LQ LTNNLCYT        S VPPAYYAHLAAFRARYY
Sbjct:   897 QGTSRPAHYHVLLDENGFTADQLQMLTNNLCYTYARCTKSVSIVPPAYYAHLAAFRARYY 956

Query:   125 IEXXXXXXXXXXXXXXXXVRGEAASVRPLPPLSPNIKDVMFFC 167
             +E                  G+  S   LP +  N+K+VMF+C
Sbjct:   957 MESEMSDGGSSRSRSSTTGVGQVIS--QLPAIKDNVKEVMFYC 997

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|F1PQZ7 EIF2C2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 189 (71.6 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
 Identities = 37/63 (58%), Positives = 49/63 (77%)

Query:    65 KGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQS-AVP-PAYYAHLAAFRAR 122
             +GTSRP HYHVL+D+N+F++D LQ LT  LC+T     C +S ++P PAYYAHL AFRAR
Sbjct:   711 QGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVR--CTRSVSIPAPAYYAHLVAFRAR 768

Query:   123 YYI 125
             Y++
Sbjct:   769 YHL 771

GO:0003676 "nucleic acid binding" evidence=IEA

TAIR|locus:2007111 AGO7 "ARGONAUTE7" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 61/140 (43%), Positives = 78/140 (55%)

Query:    32 DPTRGPVNAGMIRDGV--SEGQFSHVLLSEMDAIRKGTSRPVHYHVLFDENKFTADNLQK 89
             DP    +  G + D V     +F   L S +    KGTSRP HYH+L+DEN+FT+D LQ+
Sbjct:   856 DPDHENIPPGTVVDTVITHPKEFDFYLCSHLGV--KGTSRPTHYHILWDENEFTSDELQR 913

Query:    90 LTNNLCYTLTSKFCFQ--SAVPPAYYAHLAAFRARYYIEXXXXXXXXXXXXXXXXVRGEA 147
             L  NLCYT     C +  S VPPAYYAHLAA+R R YIE                  G  
Sbjct:   914 LVYNLCYTFVR--CTKPISIVPPAYYAHLAAYRGRLYIERSSESNGGSMNPSSVSRVGPP 971

Query:   148 ASVRPLPPLSPNIKDVMFFC 167
              ++ PLP LS N+K++MF+C
Sbjct:   972 KTI-PLPKLSDNVKNLMFYC 990

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0016246 "RNA interference" evidence=IEP

GO:0035195 "gene silencing by miRNA" evidence=TAS

GO:0040034 "regulation of development, heterochronic" evidence=IMP

GO:0010050 "vegetative phase change" evidence=IMP

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=IMP

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=IMP

GO:0010599 "production of lsiRNA involved in RNA interference" evidence=IMP

UNIPROTKB|O77503 EIF2C2 "Protein argonaute-2" [Oryctolagus cuniculus (taxid:9986)]

 Score = 189 (71.6 bits), Expect = 5.3e-22, Sum P(2) = 5.3e-22
 Identities = 37/63 (58%), Positives = 49/63 (77%)

Query:    65 KGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQS-AVP-PAYYAHLAAFRAR 122
             +GTSRP HYHVL+D+N+F++D LQ LT  LC+T     C +S ++P PAYYAHL AFRAR
Sbjct:   738 QGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVR--CTRSVSIPAPAYYAHLVAFRAR 795

Query:   123 YYI 125
             Y++
Sbjct:   796 YHL 798

GO:0000340 "RNA 7-methylguanosine cap binding" evidence=ISS

GO:0005844 "polysome" evidence=ISS

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0016442 "RNA-induced silencing complex" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=ISS

GO:0031054 "pre-miRNA processing" evidence=ISS

GO:0035068 "micro-ribonucleoprotein complex" evidence=ISS

GO:0035197 "siRNA binding" evidence=ISS

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=ISS

GO:0035279 "mRNA cleavage involved in gene silencing by miRNA" evidence=ISS

GO:0045947 "negative regulation of translational initiation" evidence=ISS

GO:0070551 "endoribonuclease activity, cleaving siRNA-paired mRNA" evidence=ISS

UNIPROTKB|F1NL39 LOC100858102 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 189 (71.6 bits), Expect = 5.6e-22, Sum P(2) = 5.6e-22
 Identities = 37/63 (58%), Positives = 49/63 (77%)

Query:    65 KGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQS-AVP-PAYYAHLAAFRAR 122
             +GTSRP HYHVL+D+N+F++D LQ LT  LC+T     C +S ++P PAYYAHL AFRAR
Sbjct:   754 QGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVR--CTRSVSIPAPAYYAHLVAFRAR 811

Query:   123 YYI 125
             Y++
Sbjct:   812 YHL 814

GO:0000340 "RNA 7-methylguanosine cap binding" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0005844 "polysome" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0016442 "RNA-induced silencing complex" evidence=IEA

GO:0031054 "pre-miRNA processing" evidence=IEA

GO:0035068 "micro-ribonucleoprotein complex" evidence=IEA

GO:0035197 "siRNA binding" evidence=IEA

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=IEA

GO:0035279 "mRNA cleavage involved in gene silencing by miRNA" evidence=IEA

GO:0045947 "negative regulation of translational initiation" evidence=IEA

GO:0070551 "endoribonuclease activity, cleaving siRNA-paired mRNA" evidence=IEA

UNIPROTKB|Q9UKV8 EIF2C2 "Protein argonaute-2" [Homo sapiens (taxid:9606)]

 Score = 189 (71.6 bits), Expect = 5.6e-22, Sum P(2) = 5.6e-22
 Identities = 37/63 (58%), Positives = 49/63 (77%)

Query:    65 KGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQS-AVP-PAYYAHLAAFRAR 122
             +GTSRP HYHVL+D+N+F++D LQ LT  LC+T     C +S ++P PAYYAHL AFRAR
Sbjct:   757 QGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVR--CTRSVSIPAPAYYAHLVAFRAR 814

Query:   123 YYI 125
             Y++
Sbjct:   815 YHL 817

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=NAS

GO:0006412 "translation" evidence=NAS

GO:0035279 "mRNA cleavage involved in gene silencing by miRNA" evidence=IDA;IMP

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=IDA;IMP

GO:0005845 "mRNA cap binding complex" evidence=IDA

GO:0045947 "negative regulation of translational initiation" evidence=IDA

GO:0035068 "micro-ribonucleoprotein complex" evidence=IDA

GO:0035197 "siRNA binding" evidence=IDA

GO:0031054 "pre-miRNA processing" evidence=IDA

GO:0070551 "endoribonuclease activity, cleaving siRNA-paired mRNA" evidence=IDA

GO:0000340 "RNA 7-methylguanosine cap binding" evidence=IDA

GO:0016442 "RNA-induced silencing complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005844 "polysome" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004521 "endoribonuclease activity" evidence=EXP

GO:0005829 "cytosol" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0006413 "translational initiation" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027767001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (732 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	167
cd04657	426	cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain	1e-28
PLN03202	900	PLN03202, PLN03202, protein argonaute; Provisional	2e-20
smart00950	301	smart00950, Piwi, This domain is found in the prot	2e-20
pfam02171	296	pfam02171, Piwi, Piwi domain	8e-19
cd04657	426	cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain	1e-13
cd02826	393	cd02826, Piwi-like, Piwi-like: PIWI domain	4e-13
cd04658	448	cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P	3e-10
PLN03202	900	PLN03202, PLN03202, protein argonaute; Provisional	1e-05
pfam02171	296	pfam02171, Piwi, Piwi domain	5e-05
smart00950	301	smart00950, Piwi, This domain is found in the prot	2e-04

>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily

 Score =  108 bits (273), Expect = 1e-28
 Identities = 39/61 (63%), Positives = 43/61 (70%)

Query: 65  KGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYY 124
           +GT+RP HYHVL+DE  FTAD LQ LT NLCYT        S  PPAYYAHLAA RAR Y
Sbjct: 366 QGTARPTHYHVLWDEIGFTADELQTLTYNLCYTYARCTRSVSIPPPAYYAHLAAARARCY 425

Query: 125 I 125
           +
Sbjct: 426 L 426

Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. Length = 426

>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional

 Score = 87.1 bits (216), Expect = 2e-20
 Identities = 40/102 (39%), Positives = 53/102 (51%), Gaps = 2/102 (1%)

Query: 66  GTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYI 125
           GT+RP HYHVL DE  F+AD+LQ+L ++L Y         S V P  YAHLAA +   ++
Sbjct: 801 GTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFM 860

Query: 126 EGEGAGAADAGPGKGAAVRGEAASVRPLPPLSPNIKDVMFFC 167
           + E    ++     G      A  V  LP L  N+   MFFC
Sbjct: 861 KFE--DMSETSSSHGGITSAGAVPVPELPRLHENVASSMFFC 900

Length = 900

>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives

 Score = 85.1 bits (211), Expect = 2e-20
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 62  AIRKGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQS-AVP-PAYYAHLAAF 119
           A  +GT+RP HY VL+DE     D LQ+LT  LC+        +  ++P P YYAHL A 
Sbjct: 237 AGLQGTARPTHYTVLYDEGNLDPDELQRLTYKLCHLYYR--STRPVSLPAPVYYAHLLAK 294

Query: 120 RARYYIE 126
           RAR  + 
Sbjct: 295 RARQLLH 301

The function of this domain is the dsRNA guided hydrolysis of ssRNA. Determination of the crystal structure of Argonaute reveals that PIWI is an RNase H domain, and identifies Argonaute as Slicer, the enzyme that cleaves mRNA in the RNAi RISC complex.. In addition, Mg+2 dependence and production of 3'-OH and 5' phosphate products are shared characteristics of RNaseH and RISC. The PIWI domain core has a tertiary structure belonging to the RNase H family of enzymes. RNase H fold proteins all have a five-stranded mixed beta-sheet surrounded by helices. By analogy to RNase H enzymes which cleave single-stranded RNA guided by the DNA strand in an RNA/DNA hybrid, the PIWI domain can be inferred to cleave single-stranded RNA, for example mRNA, guided by double stranded siRNA. Length = 301

>gnl|CDD|216915 pfam02171, Piwi, Piwi domain

 Score = 80.8 bits (200), Expect = 8e-19
 Identities = 26/63 (41%), Positives = 34/63 (53%)

Query: 64  RKGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARY 123
           R+GT +P  Y VL+DE   + + LQ+LT  LCY     F   S   P YYAH  A R R 
Sbjct: 234 RQGTVKPTKYTVLYDEIGLSPEELQQLTYKLCYMYQRVFRPVSLPAPVYYAHKLAKRGRN 293

Query: 124 YIE 126
            ++
Sbjct: 294 NLK 296

This domain is found in the protein Piwi and its relatives. The function of this domain is the dsRNA guided hydrolysis of ssRNA. Determination of the crystal structure of Argonaute reveals that PIWI is an RNase H domain, and identifies Argonaute as Slicer, the enzyme that cleaves mRNA in the RNAi RISC complex. In addition, Mg+2 dependence and production of 3'-OH and 5' phosphate products are shared characteristics of RNaseH and RISC. The PIWI domain core has a tertiary structure belonging to the RNase H family of enzymes. RNase H fold proteins all have a five-stranded mixed beta-sheet surrounded by helices. By analogy to RNase H enzymes which cleave single-stranded RNA guided by the DNA strand in an RNA/DNA hybrid, the PIWI domain can be inferred to cleave single-stranded RNA, for example mRNA, guided by double stranded siRNA. Length = 296

>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 31/79 (39%), Positives = 37/79 (46%), Gaps = 21/79 (26%)

Query: 1   MDWPAVTTYRGLVSAQQHREEIIQDLF------------TVQQDPTRGPVNAGMI--RDG 46
           +DW     Y   V  Q HR+EII DL                + P R      +I  RDG
Sbjct: 227 VDWHL-AQYPASVRLQSHRQEIIDDLESMVRELLRAFKKATGKLPER------IIYYRDG 279

Query: 47  VSEGQFSHVLLSEMDAIRK 65
           VSEGQF+ VL  E+ AIRK
Sbjct: 280 VSEGQFAQVLNEELPAIRK 298

Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. Length = 426

>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain

 Score = 65.5 bits (160), Expect = 4e-13
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 10/98 (10%)

Query: 32  DPTRGPVN--AGMIRD--GVSEGQFSHVLLSEMDAIRKGTSRPVHYHVLFDENKFTADNL 87
           +   G  N   G + D    S G     L S +   R+GT +P  Y V+F++  ++ + L
Sbjct: 300 EKNGGVQNPEPGTVVDHTITSPGLSEFYLASHV--ARQGTVKPTKYTVVFNDKNWSLNEL 357

Query: 88  QKLTNNLCYTLTSKFCFQS-AVP-PAYYAHLAAFRARY 123
           + LT  LC T   +  +   ++P P YYAH  A R R 
Sbjct: 358 EILTYILCLTH--QNVYSPISLPAPLYYAHKLAKRGRN 393

Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism. Length = 393

>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 63  IRKGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSA--VP-PAYYAHLAAF 119
           +R+GT  P HY+VL+D      D+LQ+LT  LC+     + +  +  VP P  YAH  AF
Sbjct: 388 VRQGTVTPTHYNVLYDTTGLKPDHLQRLTYKLCHLY---YNWSGSIRVPAPCQYAHKLAF 444

This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. Length = 448

>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 36/112 (32%)

Query: 3   WPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTRGPVNAGMI------------------- 43
           WP ++ YR  V  Q  + E+I  LF     P     + G+I                   
Sbjct: 658 WPLISRYRASVRTQSPKVEMIDSLF----KPVGDKDDDGIIRELLLDFYTSSGKRKPEQI 713

Query: 44  ---RDGVSEGQFSHVLLSEMDAIRKGTSRPVHYHVLFDEN---KFTADNLQK 89
              RDGVSE QF+ VL  E+D I +            DE+   KFT    QK
Sbjct: 714 IIFRDGVSESQFNQVLNIELDQIIEACKF-------LDESWSPKFTVIVAQK 758

Length = 900

>gnl|CDD|216915 pfam02171, Piwi, Piwi domain

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 7   TTYRGLVSAQQHREEIIQDLFTVQQDPTRG--------PVNAGMIRDGVSEGQFSHVLLS 58
             Y G V  Q   +E+I+ L  +  +  R         P    + RDGVSEGQF  VL  
Sbjct: 104 QKYAGGVRYQASGQELIEPLKEIILESLRSFYKSRKKKPERIIVYRDGVSEGQFPQVLNY 163

Query: 59  EMDAIRK 65
           E++ I++
Sbjct: 164 EVNQIKE 170

This domain is found in the protein Piwi and its relatives. The function of this domain is the dsRNA guided hydrolysis of ssRNA. Determination of the crystal structure of Argonaute reveals that PIWI is an RNase H domain, and identifies Argonaute as Slicer, the enzyme that cleaves mRNA in the RNAi RISC complex. In addition, Mg+2 dependence and production of 3'-OH and 5' phosphate products are shared characteristics of RNaseH and RISC. The PIWI domain core has a tertiary structure belonging to the RNase H family of enzymes. RNase H fold proteins all have a five-stranded mixed beta-sheet surrounded by helices. By analogy to RNase H enzymes which cleave single-stranded RNA guided by the DNA strand in an RNA/DNA hybrid, the PIWI domain can be inferred to cleave single-stranded RNA, for example mRNA, guided by double stranded siRNA. Length = 296

>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 18/76 (23%)

Query: 1   MDWPAVTTYRGLVSAQQHRE--EIIQDLF------TVQQDPTRGPVNAGMI---RDGVSE 49
            ++ +   Y+  V  Q  R+  EI+++          ++ P R       I   RDGVSE
Sbjct: 108 GNYLSGNFYQAFVREQGSRQLKEILREALKKYYKSNRKRLPDR-------IVVYRDGVSE 160

Query: 50  GQFSHVLLSEMDAIRK 65
           GQF  VL  E+ AI+K
Sbjct: 161 GQFKQVLEYEVKAIKK 176

The function of this domain is the dsRNA guided hydrolysis of ssRNA. Determination of the crystal structure of Argonaute reveals that PIWI is an RNase H domain, and identifies Argonaute as Slicer, the enzyme that cleaves mRNA in the RNAi RISC complex.. In addition, Mg+2 dependence and production of 3'-OH and 5' phosphate products are shared characteristics of RNaseH and RISC. The PIWI domain core has a tertiary structure belonging to the RNase H family of enzymes. RNase H fold proteins all have a five-stranded mixed beta-sheet surrounded by helices. By analogy to RNase H enzymes which cleave single-stranded RNA guided by the DNA strand in an RNA/DNA hybrid, the PIWI domain can be inferred to cleave single-stranded RNA, for example mRNA, guided by double stranded siRNA. Length = 301

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
PLN03202	900	protein argonaute; Provisional	100.0
KOG1041	876	consensus Translation initiation factor 2C (eIF-2C	100.0
cd04657	426	Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut	100.0
PF02171	302	Piwi: Piwi domain; InterPro: IPR003165 This domain	100.0
cd04658	448	Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain	100.0
cd02826	393	Piwi-like Piwi-like: PIWI domain. Domain found in	100.0
KOG1042	845	consensus Germ-line stem cell division protein Hiw	100.0
cd04659	404	Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI	99.6
COG1431	685	Argonaute homolog, implicated in RNA metabolism [T	97.42
PF13032	138	DUF3893: Domain of unknown function (DUF3893)	95.12

>PLN03202 protein argonaute; Provisional

Probab=100.00  E-value=5.9e-47  Score=362.47  Aligned_cols=165  Identities=39%  Similarity=0.624  Sum_probs=137.3

Q ss_pred             CCCCCCceeeeEeeeeCCchhHHHhH---------HHHhhcc-------C--CCCceeeEEecCCChhhHHHHHHHHHHh
Q 038471            1 MDWPAVTTYRGLVSAQQHREEIIQDL---------FTVQQDP-------T--RGPVNAGMIRDGVSEGQFSHVLLSEMDA   62 (167)
Q Consensus         1 ~~~~~~t~Y~s~~~~Q~~r~Eii~~L---------~~~~~~~-------~--~~p~~iiiyRDGVsegq~~~v~~~Ev~~   62 (167)
                      +||+.+++|++.+++|.+++|+|++|         ..|+.++       +  +.|.+|||||||||||||++|+++|+++
T Consensus       656 ~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseGQ~~~Vl~~Ev~~  735 (900)
T PLN03202        656 RQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNIELDQ  735 (900)
T ss_pred             cCcccccceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHHHHHHHHHHHHHH
Confidence            58999999999999999999999885         3343322       2  3499999999999999999999999999


Q ss_pred             hhc--------------------------------------------------------------cCCCceeEEEeeCCC
Q 038471           63 IRK--------------------------------------------------------------GTSRPVHYHVLFDEN   80 (167)
Q Consensus        63 i~~--------------------------------------------------------------GTarPt~Y~Vl~d~~   80 (167)
                      |++                                                              ||+|||||+||+||+
T Consensus       736 i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~  815 (900)
T PLN03202        736 IIEACKFLDESWSPKFTVIVAQKNHHTKFFQAGSPDNVPPGTVVDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEI  815 (900)
T ss_pred             HHHHHHHhCCCCCCcEEEEEEeccceeeeeccCCCCCCCCceEeccccccCCcceEEEecccccccCCcCceEEEEECCC
Confidence            987                                                              999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCccCcccCCCCCCCCCccC
Q 038471           81 KFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGEGAGAADAGPGKGAAVRGEAASVRPLPPLSPNI  160 (167)
Q Consensus        81 ~~~~d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~v~~~~  160 (167)
                      ++++|+||+|||+|||+|+|||++||||+||||||++|+|+|.|++.+...++++++++.  +...+.....+..||+++
T Consensus       816 ~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~  893 (900)
T PLN03202        816 GFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSHGGI--TSAGAVPVPELPRLHENV  893 (900)
T ss_pred             CCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhccccCCcccccccccc--CCCCccccccccccchhh
Confidence            999999999999999999999999999999999999999999999854322222111111  111222245678899999


Q ss_pred             cCCeeeC
Q 038471          161 KDVMFFC  167 (167)
Q Consensus       161 ~~~M~f~  167 (167)
                      +++||||
T Consensus       894 ~~~Mfy~  900 (900)
T PLN03202        894 ASSMFFC  900 (900)
T ss_pred             cCCeeeC
Confidence            9999998

>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.8e-41  Score=323.80  Aligned_cols=165  Identities=35%  Similarity=0.467  Sum_probs=137.4

Q ss_pred             CCCCCCceeeeEeeeeCCchhHHHhHHHHhhccC--------CCCceeeEEecCCChhhHHHHHHHHHHhhhc-------
Q 038471            1 MDWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPT--------RGPVNAGMIRDGVSEGQFSHVLLSEMDAIRK-------   65 (167)
Q Consensus         1 ~~~~~~t~Y~s~~~~Q~~r~Eii~~L~~~~~~~~--------~~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~-------   65 (167)
                      +|| ..++|.+.+++|.+|+|+|+++.+++.+.+        +.|.+|||||||||||||.+|+++|+.+||+       
T Consensus       635 ~~~-~~~~y~g~~~~Q~~r~e~i~~~~~~~~~~l~~f~~~t~~~P~~IIiyRdGvSEgqf~~vl~~E~~~ir~a~~~~~~  713 (876)
T KOG1041|consen  635 LDW-HPQKFAGFVRFQKSRQEVIQDLGEMIRELLRSFRKSTRKLPDRIVIYRDGVSEGQFSMVLEEELRAIKEACKKLQE  713 (876)
T ss_pred             ccc-cchhhcceEEEecCChhhhcchHHHHHHHHHHHHHhccCCCceEEEEecCCccchHHHHHHHHHHHHHHHHHHhCC
Confidence            589 889999999999999999999777665543        3599999999999999999999999999997       


Q ss_pred             --------------------------------------------------------------cCCCceeEEEeeCCCCCC
Q 038471           66 --------------------------------------------------------------GTSRPVHYHVLFDENKFT   83 (167)
Q Consensus        66 --------------------------------------------------------------GTarPt~Y~Vl~d~~~~~   83 (167)
                                                                                    ||+|||||+||+||++++
T Consensus       714 ~y~P~it~Iv~qKrHhtR~F~~~~~~~~~~~~~Nv~pGT~VD~~It~p~~~dFyL~sh~g~qGTsrp~~Y~VL~dd~~~~  793 (876)
T KOG1041|consen  714 GYNPKITVIVAQKRHHTRLFAAELSKDGKAQSQNVPPGTVVDTTITSPGYFDFYLCSHHGLQGTSKPTHYTVLYDDIGFS  793 (876)
T ss_pred             CCCCceEEEEEEcccceeeecccCCCCccCCccCCCCCCEecccccCCCcceEEEeccCcccccccCceEEEEeCCCCCC
Confidence                                                                          999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCccCcccCCCCCCCCCccCcCC
Q 038471           84 ADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGEGAGAADAGPGKGAAVRGEAASVRPLPPLSPNIKDV  163 (167)
Q Consensus        84 ~d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~  163 (167)
                      +|+||+|||+|||+|+||++|||||+|+||||++|+|||.+......+.+...+..+. .............+|.++.+.
T Consensus       794 ~d~lq~lt~~Lc~~~qr~t~pvSiP~P~YyA~~~A~Rgr~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~  872 (876)
T KOG1041|consen  794 KDELQKLTYALCFTHQRCTKPVSLPAPLYYAHEVAKRGRNNYKEHLREKNSSAIYQSI-VDLDALNSEEGYKEKAGLFGT  872 (876)
T ss_pred             HHHHHHHHHHHhhheeeecCCCcCCchHHHHHHHHHHhhhhhhhhccccCCCcccccc-cccchhhhhhHHHhhhcccce
Confidence            9999999999999999999999999999999999999999953321222221111110 122222245678899999999


Q ss_pred             eeeC
Q 038471          164 MFFC  167 (167)
Q Consensus       164 M~f~  167 (167)
                      ||||
T Consensus       873 ~f~a  876 (876)
T KOG1041|consen  873 RFNA  876 (876)
T ss_pred             EEeC
Confidence            9997

>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily

Probab=100.00  E-value=2.2e-40  Score=294.62  Aligned_cols=121  Identities=55%  Similarity=0.776  Sum_probs=114.4

Q ss_pred             CCceeeeEeeeeCCchhHHHhHHHHhhccC-------C-CCceeeEEecCCChhhHHHHHHHHHHhhhc-----------
Q 038471            5 AVTTYRGLVSAQQHREEIIQDLFTVQQDPT-------R-GPVNAGMIRDGVSEGQFSHVLLSEMDAIRK-----------   65 (167)
Q Consensus         5 ~~t~Y~s~~~~Q~~r~Eii~~L~~~~~~~~-------~-~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~-----------   65 (167)
                      ++++|++.+++|++++|+|++|.+++.+++       + .|.+|||||||||||||+.|+++|+++|++           
T Consensus       230 ~~~~y~~~~~~q~~~~e~i~~l~~~~~~~l~~~~~~~~~~P~~IiiyRDGvsegq~~~v~~~E~~~i~~a~~~~~~~~~p  309 (426)
T cd04657         230 HLAQYPASVRLQSHRQEIIDDLESMVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLNEELPAIRKACAKLYPGYKP  309 (426)
T ss_pred             cccccceEEEEeCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEEcCcCHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            568999999999999999999988776653       3 499999999999999999999999999997           


Q ss_pred             ---------------------------------------------------------cCCCceeEEEeeCCCCCCHHHHH
Q 038471           66 ---------------------------------------------------------GTSRPVHYHVLFDENKFTADNLQ   88 (167)
Q Consensus        66 ---------------------------------------------------------GTarPt~Y~Vl~d~~~~~~d~lq   88 (167)
                                                                               ||+|||||+||+||+++++|+||
T Consensus       310 kit~ivv~Krh~~Rff~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTarPt~Y~vl~d~~~~~~d~lq  389 (426)
T cd04657         310 KITFIVVQKRHHTRFFPTDEDDADGKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHYHVLWDEIGFTADELQ  389 (426)
T ss_pred             cEEEEEeccceeeeEeccCcccccccCCCCCCCeEEecccCCCCceeEEEeccccCccCCCCceEEEEECCCCCCHHHHH
Confidence                                                                     99999999999999999999999


Q ss_pred             HHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhh
Q 038471           89 KLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYI  125 (167)
Q Consensus        89 ~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l  125 (167)
                      +|||+|||+|+||+++||+|+|+||||++|+|||.|+
T Consensus       390 ~lt~~lc~~y~~~~~~vsip~p~~yA~~la~r~r~~~  426 (426)
T cd04657         390 TLTYNLCYTYARCTRSVSIPPPAYYAHLAAARARCYL  426 (426)
T ss_pred             HHHHHHhhcccccCCCcccchHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999985

Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.

>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []

Probab=100.00  E-value=3.9e-36  Score=253.69  Aligned_cols=123  Identities=38%  Similarity=0.568  Sum_probs=109.0

Q ss_pred             CCCceeeeEeeeeCCchhHHHhHHHHhhc-------cCC--CCceeeEEecCCChhhHHHHHHHHHHhhhc---------
Q 038471            4 PAVTTYRGLVSAQQHREEIIQDLFTVQQD-------PTR--GPVNAGMIRDGVSEGQFSHVLLSEMDAIRK---------   65 (167)
Q Consensus         4 ~~~t~Y~s~~~~Q~~r~Eii~~L~~~~~~-------~~~--~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~---------   65 (167)
                      ++.++|++.+++|..++|++++|.+++++       .++  .|.+|||||||||||||+.|+++|+++|++         
T Consensus       106 ~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~L~~~~~~~~~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~~~~  185 (302)
T PF02171_consen  106 SDGSKYFSSVRFQDSGQEIIDNLEEIIKEALKEFKKNNGKWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELGEDY  185 (302)
T ss_dssp             TTTCEEEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTTT-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHTHTT
T ss_pred             CccccccceeEEeccchhhhcchhhHHHHHHHHHHHHcCCCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcccCC
Confidence            67899999999999999999987665544       334  499999999999999999999999999996         


Q ss_pred             --------------------------------------------------------cCCCceeEEEeeCCCCCCHHHHHH
Q 038471           66 --------------------------------------------------------GTSRPVHYHVLFDENKFTADNLQK   89 (167)
Q Consensus        66 --------------------------------------------------------GTarPt~Y~Vl~d~~~~~~d~lq~   89 (167)
                                                                              ||+||+||+||+|+.+++.|+||+
T Consensus       186 ~p~~~~i~v~K~~~~R~f~~~~~~~~~N~~~Gtvvd~~i~~~~~~~f~l~s~~~~~Gt~~P~~y~vl~~~~~~~~~~l~~  265 (302)
T PF02171_consen  186 NPKITYIVVQKRHNTRFFPQNGRDGLQNPPPGTVVDTGITSPNYFEFYLVSHTARQGTARPTHYTVLYDDSNLSMDELQQ  265 (302)
T ss_dssp             CTEEEEEEEESSSS--EEESSSEETTTEECTTEEESSEEEECSBEEEEEETSCCCSSSEEEEEEEEEEESSCSCHHHHHH
T ss_pred             CCcEEEEEeeccccceEeecccccccCCCCCCeeeccceeeecceeeeeeecccccccccccEEEEecCcccccHHHHHH
Confidence                                                                    999999999999999999999999


Q ss_pred             HHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhhh
Q 038471           90 LTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIE  126 (167)
Q Consensus        90 lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l~  126 (167)
                      +||.|||+|+||++++|+|+|+||||++|+|++++++
T Consensus       266 ~t~~L~~~~~~~~~~~~lP~p~~yA~~~a~~~~~~~~  302 (302)
T PF02171_consen  266 LTYSLCHLYQNSTGPISLPAPLYYAHKLAKRGRNNLK  302 (302)
T ss_dssp             HHHHHTTGGTTSSS--SS-HHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhcccCCCCccCHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999874

It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....

>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes

Probab=100.00  E-value=7.1e-36  Score=266.51  Aligned_cols=119  Identities=31%  Similarity=0.421  Sum_probs=110.9

Q ss_pred             CCCceeeeEeeeeCCchhH-HHhHHHHhhccC--------CCCceeeEEecCCChhhHHHHHHHHHHhhhc---------
Q 038471            4 PAVTTYRGLVSAQQHREEI-IQDLFTVQQDPT--------RGPVNAGMIRDGVSEGQFSHVLLSEMDAIRK---------   65 (167)
Q Consensus         4 ~~~t~Y~s~~~~Q~~r~Ei-i~~L~~~~~~~~--------~~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~---------   65 (167)
                      +++++|++.++.|..++|+ +++|.+++.+++        +.|.+|||||||||||||..|+++|+++|++         
T Consensus       256 ~~~~~~~~~~~~q~~~~e~~~~~l~~~~~~~l~~y~~~~~~~P~~IiiyRdGvsegq~~~v~~~E~~~i~~a~~~~~~~~  335 (448)
T cd04658         256 KSITKWFSKYISQVRGQEEIIDSLGKSMKKALKAYKKENKKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENY  335 (448)
T ss_pred             CCCceEeeEEEEeCCCceeeHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            4579999999999999998 888888766543        3499999999999999999999999999987         


Q ss_pred             -------------------------------------------------------cCCCceeEEEeeCCCCCCHHHHHHH
Q 038471           66 -------------------------------------------------------GTSRPVHYHVLFDENKFTADNLQKL   90 (167)
Q Consensus        66 -------------------------------------------------------GTarPt~Y~Vl~d~~~~~~d~lq~l   90 (167)
                                                                             ||+||+||+||+||+++++|+||+|
T Consensus       336 ~p~it~ivv~Kr~~~Rff~~~~~~~~N~~~GTvVd~~it~p~~~dFyL~s~~~~qGtarP~~Y~Vl~d~~~~~~~~lq~l  415 (448)
T cd04658         336 SPKLAYIVVNKRINTRFFNQGGNNFSNPPPGTVVDSEITKPEWYDFFLVSQSVRQGTVTPTHYNVLYDTTGLKPDHLQRL  415 (448)
T ss_pred             CCCEEEEEEeccccceeecCCCCCCCCCCCCcEecccccCCCcccEEEeccccCccCCCCceEEEEECCCCCCHHHHHHH
Confidence                                                                   9999999999999999999999999


Q ss_pred             HHHHHhhhhccCCCCcccchHHHHHHHHHHHH
Q 038471           91 TNNLCYTLTSKFCFQSAVPPAYYAHLAAFRAR  122 (167)
Q Consensus        91 t~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r  122 (167)
                      ||+|||+|+||+++||+|+|+||||++|+|++
T Consensus       416 t~~lc~~y~~~~~~vs~P~p~~yA~~~a~~~g  447 (448)
T cd04658         416 TYKLCHLYYNWSGSIRVPAPCQYAHKLAFLVG  447 (448)
T ss_pred             HHHhhhcccCCCCCCccCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999975

This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.

>cd02826 Piwi-like Piwi-like: PIWI domain

Probab=100.00  E-value=2.4e-34  Score=253.31  Aligned_cols=115  Identities=35%  Similarity=0.509  Sum_probs=104.1

Q ss_pred             eeeEeeeeCCchhHHHhHHHHhhccC--------C-CCceeeEEecCCChhhHHHHHHHHHHhhhc--------------
Q 038471            9 YRGLVSAQQHREEIIQDLFTVQQDPT--------R-GPVNAGMIRDGVSEGQFSHVLLSEMDAIRK--------------   65 (167)
Q Consensus         9 Y~s~~~~Q~~r~Eii~~L~~~~~~~~--------~-~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~--------------   65 (167)
                      +...++.|..++|++++|.+++++.+        + .|.+|+|||||||||||+.|+++|+++|++              
T Consensus       206 ~g~~~~~~~~~~~~~~~l~~~~~~~L~~y~~~~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~~~~~~~~p~it~  285 (393)
T cd02826         206 LGGFLYVQPSREVKLQDLGEVIKKCLDGFKKSTGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEACEIEESYRPKLVI  285 (393)
T ss_pred             cceEEEEecCccchHHHHHHHHHHHHHHHHHHcCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence            34557788888898888877665443        3 589999999999999999999999999963              


Q ss_pred             --------------------------------------------------cCCCceeEEEeeCCCCCCHHHHHHHHHHHH
Q 038471           66 --------------------------------------------------GTSRPVHYHVLFDENKFTADNLQKLTNNLC   95 (167)
Q Consensus        66 --------------------------------------------------GTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc   95 (167)
                                                                        ||+||+||+||+||+++++|+||+|||.||
T Consensus       286 Ivv~Krh~~Rff~~~~~~~~~Np~~GTvVd~~it~p~~~dFyL~sh~~~qGT~rP~~Y~Vl~d~~~~~~d~lq~lty~lc  365 (393)
T cd02826         286 IVVQKRHNTRFFPNEKNGGVQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFNDKNWSLNELEILTYILC  365 (393)
T ss_pred             EEEeccccceeccCCCCCCCCCCCCceEeccccccCCcceEEEeccccCcCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence                                                              999999999999999999999999999999


Q ss_pred             hhhhccCCCCcccchHHHHHHHHHHHHh
Q 038471           96 YTLTSKFCFQSAVPPAYYAHLAAFRARY  123 (167)
Q Consensus        96 ~~y~~~~~~vs~p~P~~yA~~~a~r~r~  123 (167)
                      |+|+||+++||+|+|+||||++|+|||+
T Consensus       366 ~~y~~~~~~vslP~p~~yA~~~a~r~rn  393 (393)
T cd02826         366 LTHQNVYSPISLPAPLYYAHKLAKRGRN  393 (393)
T ss_pred             hcccccCCCcccChHHHHHHHHHHhhcC
Confidence            9999999999999999999999999984

Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.

>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.3e-35  Score=267.76  Aligned_cols=127  Identities=27%  Similarity=0.398  Sum_probs=118.2

Q ss_pred             CCCCCCceeeeEeeeeCCchhHHHhHHHHhhccCC-------C-CceeeEEecCCChhhHHHHHHHHHH----hhhc---
Q 038471            1 MDWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPTR-------G-PVNAGMIRDGVSEGQFSHVLLSEMD----AIRK---   65 (167)
Q Consensus         1 ~~~~~~t~Y~s~~~~Q~~r~Eii~~L~~~~~~~~~-------~-p~~iiiyRDGVsegq~~~v~~~Ev~----~i~~---   65 (167)
                      || +++|+|||+|..|...+|+.++|+-++.++|+       . |.+||+||||||+||++.+.++||+    ++..   
T Consensus       631 ~n-~~~tr~fS~v~~~~~~qel~d~L~~~~~~ALr~y~~~n~~LPsRIi~YRDGVgDGQLk~l~n~EV~~~~dql~~~~a  709 (845)
T KOG1042|consen  631 MN-NDFTRWFSRVIEQENGQELADNLKVFLAKALRQYYEVNRTLPSRIIVYRDGVGDGQLKTLVNYEVPLVCDQLLDCYA  709 (845)
T ss_pred             ec-cchhhhhhheecccCHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEecCCCCcccceeeeeccchHHHHHHHHHH
Confidence            45 78899999999999999999999888877664       2 9999999999999999999999999    4443   


Q ss_pred             -------------------------------------------------------------cCCCceeEEEeeCCCCCCH
Q 038471           66 -------------------------------------------------------------GTSRPVHYHVLFDENKFTA   84 (167)
Q Consensus        66 -------------------------------------------------------------GTarPt~Y~Vl~d~~~~~~   84 (167)
                                                                                   ||..||||+||+|++++++
T Consensus       710 ~~~~~~~~rl~~iVV~KrvntR~f~~~~~~~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPTsYnvi~d~~gL~P  789 (845)
T KOG1042|consen  710 ELSNKEKPRLAVIVVTKRVNTRFFLQGSSNAQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTVSPTSYNVIYDDMGLSP  789 (845)
T ss_pred             HhcCCCCCcEEEEEEEeeccHHHHhhCCccccCCCCCceecceecccceeeeEeehhhhhcCCcCCceEEEEecCCCCCH
Confidence                                                                         9999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhhhcc
Q 038471           85 DNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGE  128 (167)
Q Consensus        85 d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l~~~  128 (167)
                      |.+|+|||.|||+|+||++.|++||||+||||||+..+..++.+
T Consensus       790 DkmQrLtfKlCHlYyNW~GtiRVPApCqYAHKLAfLv~qslH~e  833 (845)
T KOG1042|consen  790 DKMQRLTFKLCHLYYNWPGTIRVPAPCQYAHKLAFLVAQSLHRE  833 (845)
T ss_pred             HHHHHHHHHHhheeecCCcceeccchhHHHHHHHHHHHhhhhhc
Confidence            99999999999999999999999999999999999999999875

>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria

Probab=99.60  E-value=1.8e-15  Score=133.60  Aligned_cols=56  Identities=18%  Similarity=0.125  Sum_probs=52.8

Q ss_pred             cCCCceeEEEeeCCCCCCHHHHHHHHHHHHhhhhccCC-CCcccchHHHHHHHHHHHHh
Q 038471           66 GTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFC-FQSAVPPAYYAHLAAFRARY  123 (167)
Q Consensus        66 GTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~-~vs~p~P~~yA~~~a~r~r~  123 (167)
                      ||++|+|  |++|+.+.+.|+|++++|.||++|+|++. ++++|+||+|||++|+..+.
T Consensus       346 gtp~Pl~--v~~~~~~~~~~~l~~~~~~Lt~~~~n~~~~~~~lP~ti~YA~~~a~~~~~  402 (404)
T cd04659         346 GTPRPLL--LRRHSGNTDLEQLASQILGLTKLNWNSFQFYSRLPVTIHYADRVAKLLKR  402 (404)
T ss_pred             CCCCcEE--EEEccCCCCHHHHHHHHHHHhhcCcCCCCCCCCcceEEeHHHHHHHHHhc
Confidence            8999999  88899889999999999999999999999 99999999999999987654

RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.

>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]

Probab=97.42  E-value=0.00046  Score=64.58  Aligned_cols=59  Identities=27%  Similarity=0.225  Sum_probs=46.3

Q ss_pred             cCCCceeEEEeeCCCCCCHHHHHHHHHHHHhhhhccCCC--CcccchHHHHHHHHHHHHhhhhc
Q 038471           66 GTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCF--QSAVPPAYYAHLAAFRARYYIEG  127 (167)
Q Consensus        66 GTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~--vs~p~P~~yA~~~a~r~r~~l~~  127 (167)
                      ||-+|..   +.+.-+.-..++-.|.|.|+-|.+.....  ++||||++|||++.+.++....-
T Consensus       612 gT~~pi~---~r~~~g~l~~e~i~lv~dLT~mNys~~~g~~~rlPApvhYaDk~~kl~~~~~~I  672 (685)
T COG1431         612 GTPRPIA---LRRRDGKLDGELIGLVHDLTAMNYSNPSGTWSRLPAPVHYADKASKLARYGVSI  672 (685)
T ss_pred             CCCcccc---cccccCccchhhHHHHHHhhhhccCCCCCceecCCcchhhhHHHHHHHhccCCc
Confidence            8877765   34444444555555999999999999888  99999999999999988876543

>PF13032 DUF3893: Domain of unknown function (DUF3893)

Probab=95.12  E-value=0.071  Score=41.41  Aligned_cols=54  Identities=17%  Similarity=-0.044  Sum_probs=46.2

Q ss_pred             cCCCceeEEEeeCCCCCCHHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHH
Q 038471           66 GTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAF  119 (167)
Q Consensus        66 GTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~  119 (167)
                      +.....=.+|+.=...-.+++|-.||+.||..+.-+...+.+|.|+++|.++.+
T Consensus        65 ~~~~ilEI~V~~~~~~d~~~~lA~~vh~LR~~~~~~~~~l~lP~PLHlak~~~e  118 (138)
T PF13032_consen   65 QNPQILEITVLGCQPEDDPEALAKLVHYLRRSPPLYDENLALPLPLHLAKQAKE  118 (138)
T ss_pred             cCCCceEEEEeccCCCCCHHHHHHHHHHHHhCcccccccccCcccHHHHHHHHH
Confidence            466677778888766789999999999999999999999999999998877543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	167
4f3t_A	861	Human Argonaute-2 - Mir-20a Complex Length = 861		1e-14
4ei1_A	859	Crystal Structure Of Human Argonaute2 Length = 859		1e-14
2yha_A	388	Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi		2e-09
4f1n_A	1046	Crystal Structure Of Kluyveromyces Polysporus Argon		2e-08
2yhb_A	437	Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi		2e-07

>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 49/63 (77%), Gaps = 4/63 (6%)
Query: 65  KGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQS-AVP-PAYYAHLAAFRAR 122
           +GTSRP HYHVL+D+N+F++D LQ LT  LC+T     C +S ++P PAYYAHL AFRAR
Sbjct: 759 QGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVR--CTRSVSIPAPAYYAHLVAFRAR 816
Query: 123 YYI 125
           Y++
Sbjct: 817 YHL 819

>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 49/63 (77%), Gaps = 4/63 (6%)
Query: 65  KGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQS-AVP-PAYYAHLAAFRAR 122
           +GTSRP HYHVL+D+N+F++D LQ LT  LC+T     C +S ++P PAYYAHL AFRAR
Sbjct: 757 QGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVR--CTRSVSIPAPAYYAHLVAFRAR 814
Query: 123 YYI 125
           Y++
Sbjct: 815 YHL 817

>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 66/161 (40%), Gaps = 46/161 (28%)
Query: 3   WPAVTTYRGLVSAQQHREEIIQDLFT---------VQQDPTRG---PVNAGMIRDGVSEG 50
           WPA      +V    H +E + + FT          + +P      P N  + RDGVSEG
Sbjct: 196 WPA------MVWNNPHGQESMTEQFTDKFKTRLELWRSNPANNRSLPENILIFRDGVSEG 249
Query: 51  QFSHVLLSEMDAIRKGT--------------------SRPVHYHVLFDE-------NKFT 83
           QF  V+  E+  +R                       S   HY VL DE       NK  
Sbjct: 250 QFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKGSGSAHYTVLVDEIFRADYGNK-A 308
Query: 84  ADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYY 124
           AD L++LT+++CY         S  PPAYYA L   RAR +
Sbjct: 309 ADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIH 349

>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Query: 65   KGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYY 124
            KGT  P HY  L+DEN+ T+D LQ++ NNLCY             P YYA L   RA  +
Sbjct: 943  KGTGVPCHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCF 1002
Query: 125  IEXXXXXXXXXXXXXXXXVRGEAASVRP-LPPLSPNIKDVMFF 166
             +                      S    LP ++ NIK VM++
Sbjct: 1003 FKAGFELNMAQAPKEKGSKDQPTVSKNVLLPQVNDNIKSVMYY 1045

>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 34  TRGPVNAGMIRDGVSEGQFSHVLLSEMDAIRKGTSRPVHYHVLFDE-------NKFTADN 86
           ++ P    ++  GV+  ++    L +  A  +GT+R  HY VL DE       NK  AD 
Sbjct: 303 SKSPKEGTVVDRGVTNVRYWDFFL-QAHASLQGTARSAHYTVLVDEIFRADYGNK-AADT 360
Query: 87  LQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYY 124
           L++LT+++CY         S  PPAYYA L   RAR +
Sbjct: 361 LEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIH 398

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	167
2yha_A	388	Post-transcriptional gene silencing protein QDE-2;	9e-35
4f3t_A	861	Protein argonaute-2; hydrolase/gene regulation, RN	2e-31
4f1n_A	1046	Kpago; argonaute, RNAI, RNAse H, RNA binding prote	7e-31
4f1n_A	1046	Kpago; argonaute, RNAI, RNAse H, RNA binding prote	1e-05
2yhb_A	437	QDE-2, post-transcriptional gene silencing protein	9e-29
2yhb_A	437	QDE-2, post-transcriptional gene silencing protein	3e-06
1yvu_A	706	Hypothetical protein AQ_1447; RNAse H fold, RNA bi	2e-17
3ho1_A	685	Argonaute; argonaute, protein-DNA-RNA complex, nuc	9e-11
2w42_A	427	PIWI, putative uncharacterized protein; RNAI, RISC	7e-08
1u04_A	771	Argonaute, hypothetical protein PF0537; RNAI, sile	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388

 Score =  124 bits (311), Expect = 9e-35
 Identities = 48/202 (23%), Positives = 74/202 (36%), Gaps = 42/202 (20%)

Query: 3   WPAVTTYRGLVSAQQHREEIIQDLFTV------------QQDPTRGPVNAGMIRDGVSEG 50
              +  +  +V    H +E + + FT               +    P N  + RDGVSEG
Sbjct: 190 DQHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWRSNPANNRSLPENILIFRDGVSEG 249

Query: 51  QFSHVLLSEMDAIRK--------------------GTSRPVHYHVL------FDENKFTA 84
           QF  V+  E+  +R                       S   HY VL       D     A
Sbjct: 250 QFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKGSGSAHYTVLVDEIFRADYGNKAA 309

Query: 85  DNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGEGAGAADAGPGKGAAVR 144
           D L++LT+++CY         S  PPAYYA L   RAR + +       +    K     
Sbjct: 310 DTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQKELFDALDENDSVKT---- 365

Query: 145 GEAASVRPLPPLSPNIKDVMFF 166
            + A       + PN+++ M++
Sbjct: 366 DDFARWGNSGAVHPNLRNSMYY 387

>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861

 Score =  117 bits (295), Expect = 2e-31
 Identities = 39/104 (37%), Positives = 58/104 (55%)

Query: 63  IRKGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRAR 122
             +GTSRP HYHVL+D+N+F++D LQ LT  LC+T        S   PAYYAHL AFRAR
Sbjct: 757 GIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRAR 816

Query: 123 YYIEGEGAGAADAGPGKGAAVRGEAASVRPLPPLSPNIKDVMFF 166
           Y++  +   +A+     G +   +  ++     +  +    M+F
Sbjct: 817 YHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYF 860

>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046

 Score =  116 bits (290), Expect = 7e-31
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 62   AIRKGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRA 121
               KGT  P HY  L+DEN+ T+D LQ++ NNLCY             P YYA L   RA
Sbjct: 940  QALKGTGVPCHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRA 999

Query: 122  RYYIEGEGAGAADAGPGK-GAAVRGEAASVRPLPPLSPNIKDVMFF 166
              + +          P + G+  +   +    LP ++ NIK VM++
Sbjct: 1000 TCFFKAGFELNMAQAPKEKGSKDQPTVSKNVLLPQVNDNIKSVMYY 1045

>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046

 Score = 43.5 bits (101), Expect = 1e-05
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 11/75 (14%)

Query: 1   MDWPAVTTYRGLVSAQQ-HREEIIQDLFTV---------QQDPTRGPVNAGMIRDGVSEG 50
            D    T + G    Q    EEII ++ ++         + +  + P      RDGVS  
Sbjct: 788 YDDKF-TQFPGDYMLQDGPGEEIITNVGSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVD 846

Query: 51  QFSHVLLSEMDAIRK 65
           QFS V+  E+ +I++
Sbjct: 847 QFSQVVKIEVKSIKE 861

>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437

 Score =  108 bits (271), Expect = 9e-29
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 22/117 (18%)

Query: 62  AIRKGTSRPVHYHVLFDE------NKFTADNLQKLTNNLCYTLTSKFCFQ------SAVP 109
           A  +GT+R  HY VL DE          AD L++LT+++CY       F       S  P
Sbjct: 330 ASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYL------FGRATKAVSICP 383

Query: 110 PAYYAHLAAFRARYYIEGEGAGAADAGPGKGAAVRGEAASVRPLPPLSPNIKDVMFF 166
           PAYYA L   RAR + +       +    K      + A       + PN+++ M++
Sbjct: 384 PAYYADLVCDRARIHQKELFDALDENDSVKT----DDFARWGNSGAVHPNLRNSMYY 436

>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437

 Score = 45.1 bits (106), Expect = 3e-06
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 12/75 (16%)

Query: 3   WPAVTTYRGLVSAQQHREEIIQDLFTVQQDPT------------RGPVNAGMIRDGVSEG 50
              +  +  +V    H +E + + FT +                  P N  + RDGVSEG
Sbjct: 190 DQHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWRSNPANNRSLPENILIFRDGVSEG 249

Query: 51  QFSHVLLSEMDAIRK 65
           QF  V+  E+  +R 
Sbjct: 250 QFQMVIKDELPLVRA 264

>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706

 Score = 77.5 bits (190), Expect = 2e-17
 Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 3/105 (2%)

Query: 25  DLFTVQQD-PTRGPVNAGMIRDGVSEGQFSHVLLSEMDAIRKGTSRPVHYHVLFDENKFT 83
           +L  + +    R   N   I+    +     V+L+  + + +GT +P+    ++ E    
Sbjct: 594 ELLEIIKRNNPRFFSNEKFIKGYFYKLSEDSVILATYNQVYEGTHQPIKVRKVYGELPV- 652

Query: 84  ADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGE 128
            + L     +L     S F         +Y+          IE  
Sbjct: 653 -EVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPI 696

>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685

 Score = 58.5 bits (141), Expect = 9e-11
 Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 8/105 (7%)

Query: 33  PTRGPVNAGMIRDGVSEGQFSHVLLSEMDAIRKGTSRPVHYHVLFDENKFTADNLQKLTN 92
           P +G +  G+      +     +L        +GT RP+       +     + L     
Sbjct: 583 PVQGRLADGLYVPLEDKTFL--LLTVH--RDFRGTPRPLKLVHEAGDT--PLEALAHQIF 636

Query: 93  NLCYTLTSKFCFQSAVP-PAYYAH-LAAFRARYYIEGEGAGAADA 135
           +L     +       +P P + A  L     R  I        + 
Sbjct: 637 HLTRLYPASGFAFPRLPAPLHLADRLVKEVGRLGIRHLKEVDREK 681

>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427

 Score = 49.7 bits (118), Expect = 7e-08
 Identities = 8/69 (11%), Positives = 15/69 (21%), Gaps = 5/69 (7%)

Query: 66  GTSRPVHYHVLFDENKF-----TADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFR 120
              +P+   ++ D             +      L       F  ++      Y  L A  
Sbjct: 341 TPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGI 400

Query: 121 ARYYIEGEG 129
                   G
Sbjct: 401 IANVNRYGG 409

>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771

 Score = 44.1 bits (103), Expect = 8e-06
 Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 2/65 (3%)

Query: 65  KGTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVP-PAYYAHLAAFRARY 123
           K   + +  +   ++   T  ++  +   L             +P P +YAH  A   R 
Sbjct: 696 KLAKKRIIKNGKVEKQSITRQDVLDIFI-LTRLNYGSISADMRLPAPVHYAHKFANAIRN 754

Query: 124 YIEGE 128
             + +
Sbjct: 755 EWKIK 759

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 5e-05
 Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 25/102 (24%)

Query: 62  AIRKGTSRPVHYHVLFDENKFTADNLQKLTNNL--CYTLTSKFCFQSAVPPA---Y-YAH 115
             ++     +    ++ E K   +N   L  ++   Y +   F     +PP    Y Y+H
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 116 LA-------------AFRARY----YIEG--EGAGAADAGPG 138
           +               FR  +    ++E        A    G
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
4f3t_A	861	Protein argonaute-2; hydrolase/gene regulation, RN	100.0
2yha_A	388	Post-transcriptional gene silencing protein QDE-2;	100.0
2yhb_A	437	QDE-2, post-transcriptional gene silencing protein	100.0
4f1n_A	1046	Kpago; argonaute, RNAI, RNAse H, RNA binding prote	100.0
1yvu_A	706	Hypothetical protein AQ_1447; RNAse H fold, RNA bi	99.94
3ho1_A	685	Argonaute; argonaute, protein-DNA-RNA complex, nuc	99.9
1u04_A	771	Argonaute, hypothetical protein PF0537; RNAI, sile	99.89
2w42_A	427	PIWI, putative uncharacterized protein; RNAI, RISC	99.73

>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A

Probab=100.00  E-value=7.6e-48  Score=365.86  Aligned_cols=166  Identities=42%  Similarity=0.605  Sum_probs=133.3

Q ss_pred             CCCCCCceeeeEeeeeCCchhHHHhHHHHhhccC--------CCCceeeEEecCCChhhHHHHHHHHHHhhhc-------
Q 038471            1 MDWPAVTTYRGLVSAQQHREEIIQDLFTVQQDPT--------RGPVNAGMIRDGVSEGQFSHVLLSEMDAIRK-------   65 (167)
Q Consensus         1 ~~~~~~t~Y~s~~~~Q~~r~Eii~~L~~~~~~~~--------~~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~-------   65 (167)
                      +||. +++|++.+++|.+++|+|++|.+++.+++        ..|.+|||||||||||||++|+++|+++|++       
T Consensus       620 ~d~~-~~~y~~~~~~Q~~~~E~i~~l~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~~~  698 (861)
T 4f3t_A          620 MDAH-PNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEK  698 (861)
T ss_dssp             CSSS-SCCEEEEEEEESTTCCSCTTHHHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHHCT
T ss_pred             cCCC-cceEEEEEEEcCCCccHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4664 79999999999999999999988766543        3499999999999999999999999999986       


Q ss_pred             -------------------------------------------------------------cCCCceeEEEeeCCCCCCH
Q 038471           66 -------------------------------------------------------------GTSRPVHYHVLFDENKFTA   84 (167)
Q Consensus        66 -------------------------------------------------------------GTarPt~Y~Vl~d~~~~~~   84 (167)
                                                                                   ||+|||||+||+||+++++
T Consensus       699 ~~~P~it~Ivv~Krh~tRff~~~~~~~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~~~~~~  778 (861)
T 4f3t_A          699 DYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSS  778 (861)
T ss_dssp             TCCCEEEEEEEECCSCCCEEESSGGGCBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEETTCCCH
T ss_pred             CCCCcEEEEEEEccccceeeecCCcccccccCCCCCceeccCccccCCCCEEEEEEEecccccccCceEEEEeCCCCCCH
Confidence                                                                         9999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCccCcccCCCCCCCCCccCcCCe
Q 038471           85 DNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGEGAGAADAGPGKGAAVRGEAASVRPLPPLSPNIKDVM  164 (167)
Q Consensus        85 d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~M  164 (167)
                      |+||+|||+|||+|+||+++||||+||||||++|+|||.|+....++++++++.++.+.............||++++++|
T Consensus       779 d~lq~lty~Lc~~y~~~t~~vsvpaP~yYA~~~a~R~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~~~~~M  858 (861)
T 4f3t_A          779 DELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTM  858 (861)
T ss_dssp             HHHHHHHHHHTTCCTTSSBCCSSCHHHHHHHHHHHHHHHHHCCC----------------CCSTTHHHHTCCCHHHHTTT
T ss_pred             HHHHHHHHHHhhhhhccCCCCCCchHHHHHHHHHHHHHHhhccccccCCccccccCCCcccchhhhhhhhhhhhhhccCc
Confidence            99999999999999999999999999999999999999999865433333222222111111111223357999999999


Q ss_pred             eeC
Q 038471          165 FFC  167 (167)
Q Consensus       165 ~f~  167 (167)
                      ||+
T Consensus       859 ~y~  861 (861)
T 4f3t_A          859 YFA  861 (861)
T ss_dssp             TTC
T ss_pred             eeC
Confidence            996

>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A

Probab=100.00  E-value=6.5e-47  Score=332.45  Aligned_cols=160  Identities=29%  Similarity=0.403  Sum_probs=118.8

Q ss_pred             CCCceeeeEeeeeC-CchhHHHhHHHHh-------hc---cC-CCCceeeEEecCCChhhHHHHHHHHHHhhhc------
Q 038471            4 PAVTTYRGLVSAQQ-HREEIIQDLFTVQ-------QD---PT-RGPVNAGMIRDGVSEGQFSHVLLSEMDAIRK------   65 (167)
Q Consensus         4 ~~~t~Y~s~~~~Q~-~r~Eii~~L~~~~-------~~---~~-~~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~------   65 (167)
                      +.+++|.+.+++|. +++|+|++|.+++       ++   .+ +.|.+|||||||||||||++|+++|+++|++      
T Consensus       191 ~~~~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGQf~~V~~~El~~i~~a~~~~~  270 (388)
T 2yha_A          191 QHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVY  270 (388)
T ss_dssp             TTCCCCCEEEEEETTTHHHHHHHHHHHHHHHHHHHHHSGGGTTCCCSEEEEEEESCCGGGHHHHHHHTHHHHHHHHHHHS
T ss_pred             CCCCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHHHhhhhcCCCCceEEEEecCcChhHHHHHHHHHHHHHHHHHHHhh
Confidence            56899999999999 9999999987765       33   22 2499999999999999999999999999997      


Q ss_pred             -cC-------------CCceeEEEeeCCC------CCCHHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhh
Q 038471           66 -GT-------------SRPVHYHVLFDEN------KFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYI  125 (167)
Q Consensus        66 -GT-------------arPt~Y~Vl~d~~------~~~~d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l  125 (167)
                       +.             +|||||+||+||+      ++++|+||+|||+|||+|+||+++||||+|+||||++|+|||.||
T Consensus       271 ~~~~~P~it~Ivv~KrarPthY~Vl~De~f~~~~~~~~~d~lq~lty~Lc~~y~r~t~sVsipaP~yYAh~~a~R~r~~l  350 (388)
T 2yha_A          271 PAGKLPRITLIVSVKGSGSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQ  350 (388)
T ss_dssp             CTTCCCEEEEEEEC------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHC
T ss_pred             cccCCCcEEEEEeccccCCceEEEEeCCccccccCCCCHHHHHHHHHHHHHHhhcccCCCCcCcHHHHHHHHHHHHHHHh
Confidence             33             9999999999998      999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCCCCCCCCCccCcccCCCCCCCCCccCcCCeeeC
Q 038471          126 EGEGAGAADAGPGKGAAVRGEAASVRPLPPLSPNIKDVMFFC  167 (167)
Q Consensus       126 ~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~M~f~  167 (167)
                      .+..++..++++.++ +..   .....+..+|++++++||||
T Consensus       351 ~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~l~~~mfyl  388 (388)
T 2yha_A          351 KELFDALDENDSVKT-DDF---ARWGNSGAVHPNLRNSMYYI  388 (388)
T ss_dssp             HHHHHHHTTCSCCCH-HHH---HHHHHHTCCCGGGTTSCTTC
T ss_pred             hhhccCCCcccccCC-Ccc---cccccccccCHHhcCCceeC
Confidence            864332222222111 110   11123568999999999997

>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}

Probab=100.00  E-value=8.3e-47  Score=336.36  Aligned_cols=160  Identities=30%  Similarity=0.438  Sum_probs=117.1

Q ss_pred             CCCceeeeEeeeeC-CchhHHHhHHHHhh-------c---cCC-CCceeeEEecCCChhhHHHHHHHHHHhhhc------
Q 038471            4 PAVTTYRGLVSAQQ-HREEIIQDLFTVQQ-------D---PTR-GPVNAGMIRDGVSEGQFSHVLLSEMDAIRK------   65 (167)
Q Consensus         4 ~~~t~Y~s~~~~Q~-~r~Eii~~L~~~~~-------~---~~~-~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~------   65 (167)
                      +.+++|.+.+++|. +++|+|++|.+++.       +   .++ .|.+|||||||||||||++|+++|+++|++      
T Consensus       191 ~~~~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~  270 (437)
T 2yhb_A          191 QHLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVY  270 (437)
T ss_dssp             TTCCCCCEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCGGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHS
T ss_pred             CCcCeeeeEEEEcCCcchhHHHHHHHHHHHHHHHHHhhhhhcCCCCceEEEEeCCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence            46899999999999 99999999877653       3   222 399999999999999999999999999975      


Q ss_pred             ---------------------------------------------------------------cCCCceeEEEeeCCC--
Q 038471           66 ---------------------------------------------------------------GTSRPVHYHVLFDEN--   80 (167)
Q Consensus        66 ---------------------------------------------------------------GTarPt~Y~Vl~d~~--   80 (167)
                                                                                     ||+|||||+||+||+  
T Consensus       271 ~~~~~p~it~Ivv~Krh~tRff~~~~~~~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~f~  350 (437)
T 2yhb_A          271 PAGKLPRITLIVSVKRHQTRFFPTDPKHIHFKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFR  350 (437)
T ss_dssp             CTTCCCEEEEEEEC-------------------------------------------------------CEEEEEESSHH
T ss_pred             cccCCCCEEEEEEEecccceeccCCccccccccCCCCCceEecccccCCCCceEEEEecccccccCCceEEEEEeCCccc
Confidence                                                                           999999999999998  


Q ss_pred             ----CCCHHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCccCcccCCCCCCCC
Q 038471           81 ----KFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGEGAGAADAGPGKGAAVRGEAASVRPLPPL  156 (167)
Q Consensus        81 ----~~~~d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~v  156 (167)
                          ++++|+||+|||+|||+|+||+++||||+|+||||++|+|||.||....++..++++. +++..   .....+..+
T Consensus       351 ~~~~~~~~d~lq~lTy~Lc~~y~r~t~sVsipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~-~~~~~---~~~~~~~~~  426 (437)
T 2yhb_A          351 ADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQKELFDALDENDSV-KTDDF---ARWGNSGAV  426 (437)
T ss_dssp             HHHGGGHHHHHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHCHHHHHHHHHTSCC-CHHHH---HHHHHHTSC
T ss_pred             cccCCCCHHHHHHHHHHHHHhhccccCCCCcCCHHHHHHHHHHHHHHHhhhhccCCCCCCcc-CCCCc---ccccccccc
Confidence                9999999999999999999999999999999999999999999998643221111111 11111   111235689


Q ss_pred             CccCcCCeeeC
Q 038471          157 SPNIKDVMFFC  167 (167)
Q Consensus       157 ~~~~~~~M~f~  167 (167)
                      |++++++||||
T Consensus       427 ~~~l~~~mfyl  437 (437)
T 2yhb_A          427 HPNLRNSMYYI  437 (437)
T ss_dssp             CGGGTTSCTTC
T ss_pred             CHhhcCCceeC
Confidence            99999999997

>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}

Probab=100.00  E-value=3.2e-46  Score=359.64  Aligned_cols=166  Identities=33%  Similarity=0.471  Sum_probs=136.6

Q ss_pred             CCCCCCceeeeEeeeeCC-chhHHHhHHHHhhc-------cCC--CCceeeEEecCCChhhHHHHHHHHHHhhhc-----
Q 038471            1 MDWPAVTTYRGLVSAQQH-REEIIQDLFTVQQD-------PTR--GPVNAGMIRDGVSEGQFSHVLLSEMDAIRK-----   65 (167)
Q Consensus         1 ~~~~~~t~Y~s~~~~Q~~-r~Eii~~L~~~~~~-------~~~--~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~-----   65 (167)
                      +|| ++++|++.+++|.. ++|+|++|.+|+.+       .++  .|.+|||||||||||||++|+++|+++|++     
T Consensus       788 ~d~-~~t~y~s~~~~Q~~~~~Eii~~L~~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev~~Ik~a~~~~  866 (1046)
T 4f1n_A          788 YDD-KFTQFPGDYMLQDGPGEEIITNVGSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVKSIKESVRKF  866 (1046)
T ss_dssp             CSS-SCCCCCEEEEEEEEETCCSCTTGGGGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHHHHHHHHHHHH
T ss_pred             ECC-CcCeEeeEEEEecCCCccHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCCchHHHHHHHHHHHHHHHHHHHHh
Confidence            476 57999999999998 99999987665543       322  399999999999999999999999999863     


Q ss_pred             -----------------------------------------------------------------------------cCC
Q 038471           66 -----------------------------------------------------------------------------GTS   68 (167)
Q Consensus        66 -----------------------------------------------------------------------------GTa   68 (167)
                                                                                                   ||+
T Consensus       867 ~~~~~~~~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTa  946 (1046)
T 4f1n_A          867 GPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSHQALKGTG  946 (1046)
T ss_dssp             THHHHTSCCCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSBEEEEEECSCCCSSSC
T ss_pred             hhhcccccCCCCCEEEEEEecCccceeeeccccccccccccccccccCCCCCCcEeeccccccCcceEEEEccccCCCcc
Confidence                                                                                         999


Q ss_pred             CceeEEEeeCCCCCCHHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhhhccCCCCC-CCCCCCCCCccCcc
Q 038471           69 RPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGEGAGAA-DAGPGKGAAVRGEA  147 (167)
Q Consensus        69 rPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l~~~~~~~s-~~~s~~~~~~~~~~  147 (167)
                      |||||+||+||+++++|+||+|||+|||+|+||+++||||+||||||++|+|||.|+...+++.+ +.++.+++.+....
T Consensus       947 rPthY~VL~De~~~~~d~lQ~LTy~LC~~y~r~t~sVsvPaP~yYAhlla~R~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 1026 (1046)
T 4f1n_A          947 VPCHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQAPKEKGSKDQPTV 1026 (1046)
T ss_dssp             CCEEEEEEEESSCCCHHHHHHHHHHTTSCCTTSSBCCSSCHHHHHHHHHHHHHHHHHHHTSHHHHHCC----------CC
T ss_pred             cCcEEEEEeCCCCCCHHHHHHHHHHHhhhhcccCCCccccHHHHHHHHHHHHHHHHHHhhhhccccccccccCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999997654322 22332222122123


Q ss_pred             cCCCCCCCCCccCcCCeeeC
Q 038471          148 ASVRPLPPLSPNIKDVMFFC  167 (167)
Q Consensus       148 ~~~~~~~~v~~~~~~~M~f~  167 (167)
                      ...++++.||++++++||||
T Consensus      1027 ~~~~~~~~~~~~~~~~mf~i 1046 (1046)
T 4f1n_A         1027 SKNVLLPQVNDNIKSVMYYI 1046 (1046)
T ss_dssp             CHHHHSCCCCGGGTTSCTTC
T ss_pred             CcccccchhhhhhccceeeC
Confidence            33477899999999999997

>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A

Probab=99.94  E-value=1.7e-26  Score=215.89  Aligned_cols=113  Identities=17%  Similarity=0.107  Sum_probs=95.6

Q ss_pred             CCceeeeEeeeeCCchhHHHhHHHH----hhccC-CCCceeeEEecCCChhhHHHHHHHHHHhhhc--------------
Q 038471            5 AVTTYRGLVSAQQHREEIIQDLFTV----QQDPT-RGPVNAGMIRDGVSEGQFSHVLLSEMDAIRK--------------   65 (167)
Q Consensus         5 ~~t~Y~s~~~~Q~~r~Eii~~L~~~----~~~~~-~~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~--------------   65 (167)
                      .+++|.++.+.| .++|++++|...    +++.+ ..|.+||||||||||       ++|+++|++              
T Consensus       527 ~~~~~~~~~~~q-~~~ei~~~l~~~~l~~~~~~~~~~P~rIIiyRDGVse-------~~El~~Ik~A~~~~~pkit~IvV  598 (706)
T 1yvu_A          527 ELVRYYLTSYPA-FGEKLTEKAIGDVFSLLEKLGFKKGSKIVVHRDGRLY-------RDEVAAFKKYGELYGYSLELLEI  598 (706)
T ss_dssp             CEEEEEEEEECS-CTTHHHHHHHHHHHHHHHHTTCCTTCEEEEEESSCCC-------HHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CEEEEEEEeccc-ccchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCc-------HHHHHHHHHHHHHcCCcEEEEEE
Confidence            467888887655 478898885443    33333 349999999999999       889999876              


Q ss_pred             -------------------------------------cCCCceeEEEeeCCCCCCHHHHHHHHHHHHhhhhccCCCCccc
Q 038471           66 -------------------------------------GTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAV  108 (167)
Q Consensus        66 -------------------------------------GTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vs~p  108 (167)
                                                           ||+||+||+|+.+|.  ++|+||++||+|||+|+||+++||+|
T Consensus       599 ~Krh~tRfF~~~np~pGTvVD~~~~~ffL~ss~~~~qGT~rPthY~vv~~D~--~~d~Lq~lty~Lc~ly~r~t~svslP  676 (706)
T 1yvu_A          599 IKRNNPRFFSNEKFIKGYFYKLSEDSVILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLP  676 (706)
T ss_dssp             ECSSCCCEECSCSCCTTEEEEBSSSEEEECCSCCCSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGGGCCSSSCCCSC
T ss_pred             EeccCeeEECCCCCCCeEEEEcCCCeEEEEecCCccCCCCCCEEEEEEeCCC--CHHHHHHHHHHHHHhccccCCCcccC
Confidence                                                 999999999444444  99999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHhhhhc
Q 038471          109 PPAYYAHLAAFRARYYIEG  127 (167)
Q Consensus       109 ~P~~yA~~~a~r~r~~l~~  127 (167)
                      +||||||++|+|++.+++.
T Consensus       677 aPiyYAhllA~r~~~~~~p  695 (706)
T 1yvu_A          677 ATVHYSDKITKLMLRGIEP  695 (706)
T ss_dssp             TTTTTHHHHHHHHHTCSSC
T ss_pred             hHHHHHHHHHHHHHhcCCc
Confidence            9999999999999998874

>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A

Probab=99.90  E-value=4.1e-24  Score=198.91  Aligned_cols=114  Identities=16%  Similarity=0.169  Sum_probs=90.8

Q ss_pred             CceeeeEeeeeCCchhHHHhHHHHhhccC--------CCCceeeEEecCC-ChhhHHHHHHHHHHhhhc-----------
Q 038471            6 VTTYRGLVSAQQHREEIIQDLFTVQQDPT--------RGPVNAGMIRDGV-SEGQFSHVLLSEMDAIRK-----------   65 (167)
Q Consensus         6 ~t~Y~s~~~~Q~~r~Eii~~L~~~~~~~~--------~~p~~iiiyRDGV-segq~~~v~~~Ev~~i~~-----------   65 (167)
                      .++| +.++.|...++.+++|..++.+++        ..|.+|||||||| +|||++.|++ .+..+.-           
T Consensus       500 ~~~~-~~~~~Q~~e~l~~~~L~~~l~eaL~~Y~k~ng~lP~RIIIyRDGV~se~E~~~I~e-Al~~~~~~~t~IvVqKRh  577 (685)
T 3ho1_A          500 HLLW-TLPEAQAGERIPQEVVWDLLEETLWAFRRKAGRLPSRVLLLRNGRVPQDEFALALE-ALAREGIAYDLVSVRKSG  577 (685)
T ss_dssp             CCEE-ECCCCCCSCCCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEEECSSSCSGGGHHHHH-HHHHTTCEEEEEEEESSC
T ss_pred             EEEe-EEEEccCCcEecHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCHHHHHHHHH-HHHhcCCCEEEEEEEecC
Confidence            3443 445677665556677777655443        3499999999999 8999999863 3433211           


Q ss_pred             ----------------------------------cCCCceeEEEeeCCCCCCHHHHHHHHHHHHhhhhccC-CCCcccch
Q 038471           66 ----------------------------------GTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKF-CFQSAVPP  110 (167)
Q Consensus        66 ----------------------------------GTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~-~~vs~p~P  110 (167)
                                                        ||++|+||+  +|++++++|+||++||+|||+|+||+ ++||+|+|
T Consensus       578 ~tRfF~~n~pp~~Gt~v~~e~d~flL~s~gsv~qGT~rPthy~--~D~~~~s~D~LQ~ltY~Lchmy~nst~~svsvPAP  655 (685)
T 3ho1_A          578 GGRVYPVQGRLADGLYVPLEDKTFLLLTVHRDFRGTPRPLKLV--HEAGDTPLEALAHQIFHLTRLYPASGFAFPRLPAP  655 (685)
T ss_dssp             CCCEEESSSCCCSSEEEECSTTEEEEECCCCCSSSCCCCEEEE--EEEECSCHHHHHHHHHHGGGCCSSCSSSCCSSCHH
T ss_pred             CceEecCCCCCCCeEEEeCCCCEEEEEecCCCCccCCceEEEE--ECCCCCCHHHHHHHHHHHHHhhccCCCCCCCcChH
Confidence                                              999999998  89999999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHh
Q 038471          111 AYYAHLAAFRARY  123 (167)
Q Consensus       111 ~~yA~~~a~r~r~  123 (167)
                      |||||++|++...
T Consensus       656 ~~YAhklAk~~~r  668 (685)
T 3ho1_A          656 LHLADRLVKEVGR  668 (685)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999954443

>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A

Probab=99.89  E-value=6.1e-24  Score=200.04  Aligned_cols=117  Identities=15%  Similarity=0.129  Sum_probs=92.6

Q ss_pred             CCceeeeEeeeeCCchhH-----HHhHHHHhhccC-C-CCceeeEEecCCChhhHHHHHHHHHHhhhc------------
Q 038471            5 AVTTYRGLVSAQQHREEI-----IQDLFTVQQDPT-R-GPVNAGMIRDGVSEGQFSHVLLSEMDAIRK------------   65 (167)
Q Consensus         5 ~~t~Y~s~~~~Q~~r~Ei-----i~~L~~~~~~~~-~-~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~------------   65 (167)
                      ...+|.+.+..|.+++++     +..+...|++.+ + .|.+|||||||+       |+++|+++|++            
T Consensus       582 ~~~~~~s~~~~~~~~E~i~l~~~l~~~L~~y~~~n~~~lP~RIIiyRDG~-------v~~~El~~i~ea~~~~~p~itfI  654 (771)
T 1u04_A          582 YIRKIVPIKIGEQRGESVDMNEFFKEMVDKFKEFNIKLDNKKILLLRDGR-------ITNNEEEGLKYISEMFDIEVVTM  654 (771)
T ss_dssp             CEEEEEEEECCCCSSSSCCHHHHHHHHHHHHHHTTCCCTTCEEEEECSBC-------CCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             CEEEEEEEEeecCCccEEcHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCC-------CCHHHHHHHHHHHHhcCCCEEEE
Confidence            345777766656565543     222333445553 3 499999999995       44555555542            


Q ss_pred             -----------------------------------cCCCceeE--EEeeCCCCCC----HHHHHHHHHHHHhhhhccCC-
Q 038471           66 -----------------------------------GTSRPVHY--HVLFDENKFT----ADNLQKLTNNLCYTLTSKFC-  103 (167)
Q Consensus        66 -----------------------------------GTarPt~Y--~Vl~d~~~~~----~d~lq~lt~~Lc~~y~~~~~-  103 (167)
                                                         ||++|+||  +|++|+++++    +|+||++||+|||+|+||++ 
T Consensus       655 vV~Krh~tRfF~~~~pGTVV~~DFyL~Sh~v~~~qGTprPthY~~~Vi~D~~~~~~~~~~D~lq~lty~Lchlyyn~~~~  734 (771)
T 1u04_A          655 DVIKNHPVRAFANMKMYFNLGGAIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGSISA  734 (771)
T ss_dssp             EEESCCCCCBSSCSCEEEEETTEEEEECSCCSSSCSCCCCEEEEEEEEEETTEEEECCCCHHHHHHHHHHHTCCTTCSSC
T ss_pred             EEEecCceeeecCCCCeeEEeCCEEEEeccccCCCCCCCCEEEEEEEEecCCCCCCCCCHHHHHHHHHHhhhhcccCCCC
Confidence                                               99999999  9999999999    99999999999999999999 


Q ss_pred             CCcccchHHHHHHHHHHHHhhhhcc
Q 038471          104 FQSAVPPAYYAHLAAFRARYYIEGE  128 (167)
Q Consensus       104 ~vs~p~P~~yA~~~a~r~r~~l~~~  128 (167)
                      +||+||||||||++|++++.+++.+
T Consensus       735 svrvPAP~~YAhklA~lvgq~~~~~  759 (771)
T 1u04_A          735 DMRLPAPVHYAHKFANAIRNEWKIK  759 (771)
T ss_dssp             CCCSCHHHHHHHHHHHHHHTTCCCC
T ss_pred             CccCCchHHHHHHHHHHHHhhhccC
Confidence            9999999999999999999988753

>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A

Probab=99.73  E-value=3.3e-18  Score=151.66  Aligned_cols=113  Identities=12%  Similarity=0.020  Sum_probs=89.1

Q ss_pred             eeEeeeeCCchhHHHhHHHHhhc--------cCCC-Cce--eeEEecCCChhhHHHHHHHHHHhhhc-------------
Q 038471           10 RGLVSAQQHREEIIQDLFTVQQD--------PTRG-PVN--AGMIRDGVSEGQFSHVLLSEMDAIRK-------------   65 (167)
Q Consensus        10 ~s~~~~Q~~r~Eii~~L~~~~~~--------~~~~-p~~--iiiyRDGVsegq~~~v~~~Ev~~i~~-------------   65 (167)
                      ...++.|.+++|++++|..++.+        .++. |.+  ||||      ||+..|.++|+++|++             
T Consensus       210 ~~~~~~~~~~~E~~~~l~~~l~~aL~~y~~~~~~~~P~~~rIii~------gq~~~v~~~Ei~~i~~a~~~~~~~~~~~~  283 (427)
T 2w42_A          210 WNEISPIVTSSEYLTYLKSTIKKVVYGFKKSNPDWDVEKLTLHVS------GKRPKMKDGETKILKETVEELKKQEMVSR  283 (427)
T ss_dssp             EEEECCCEEGGGHHHHHHHHHHHHHHHHHHHCTTCCCSEEEEEEE------SSCCSCHHHHHHHHHHHHHHHHHTTSSCT
T ss_pred             EEEEEecCChhHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEE------eecccccHHHHHHHHHHHHHhccccccCC
Confidence            34455566789999998776543        3332 664  4776      8888888999888762             


Q ss_pred             ------------------------------------------------c------CCC---ceeEEEeeC----CCCC-C
Q 038471           66 ------------------------------------------------G------TSR---PVHYHVLFD----ENKF-T   83 (167)
Q Consensus        66 ------------------------------------------------G------Tar---Pt~Y~Vl~d----~~~~-~   83 (167)
                                                                      +      +.+   ||||+|++|    ++++ +
T Consensus       284 ~~~l~~IvV~Kr~~~~r~f~~~~~~nP~~GTvVd~~~~~~l~~~~g~q~~~~~~~~~~~~~Pt~y~vi~d~~~~~~~~~~  363 (427)
T 2w42_A          284 DVKYAILHLNETHPFWVMGDPNNRFHPYEGTKVKLSSKRYLLTLLQPYLKRNGLEMVTPIKPLSVEIVSDNWTSEEYYHN  363 (427)
T ss_dssp             TCEEEEEEEEECCCEEEEC--------CCSEEEESSSSEEEEEEEC---------CEEEEEEEEEEEEEECCCTTTHHHH
T ss_pred             CCCEEEEEEEccccceeeecCCCCCCCCCceEEEcCCCeEEEEEEeeeccccccccccCCCCEEEEEEecCCcCcccCCC
Confidence                                                            3      433   999999995    4444 5


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhhhcc
Q 038471           84 ADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGE  128 (167)
Q Consensus        84 ~d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l~~~  128 (167)
                      +|+||++||+|||++.|++.++++|+||||||++|++++...+-+
T Consensus       364 ~d~lq~lty~L~~~nw~~t~~v~vPap~~YAhklA~l~~~~~~~~  408 (427)
T 2w42_A          364 VHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNRYG  408 (427)
T ss_dssp             HHHHHHHHHHHHTCCTTSSSCCSSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhCcccCCCCCCCcCcchHhHHHHHHHHhhhhhcC
Confidence            899999999999999999999999999999999999999977654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	167
d1yvua2	392	c.55.3.10 (A:315-706) Argonaute homologue Aq_1447	3e-21
d1u04a2	447	c.55.3.10 (A:324-770) Argonaute homologue PF0537 {	2e-11
d1w9ha1	316	c.55.3.10 (A:93-408) Hypothetical protein AF1318 {	2e-09
d1w9ha1	316	c.55.3.10 (A:93-408) Hypothetical protein AF1318 {	5e-04

>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

 Score = 86.5 bits (214), Expect = 3e-21
 Identities = 20/177 (11%), Positives = 42/177 (23%), Gaps = 52/177 (29%)

Query: 1   MDWPAVTTYRGLVSAQQHREEIIQDLFT-----VQQDPTRGPVNAGMIRDGVSEGQ---- 51
                +  Y  L S     E++ +         +++   +      + RDG         
Sbjct: 209 NSKGELVRYY-LTSYPAFGEKLTEKAIGDVFSLLEKLGFKKGSKIVVHRDGRLYRDEVAA 267

Query: 52  ----------------------------------------FSHVLLSEMDAIRKGTSRPV 71
                                                      V+L+  + + +GT +P+
Sbjct: 268 FKKYGELYGYSLELLEIIKRNNPRFFSNEKFIKGYFYKLSEDSVILATYNQVYEGTHQPI 327

Query: 72  HYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIEGE 128
               ++ E     + L     +L     S F         +Y+          IE  
Sbjct: 328 KVRKVYGELPV--EVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPI 382

>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue PF0537
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 58.8 bits (142), Expect = 2e-11
 Identities = 18/142 (12%), Positives = 34/142 (23%), Gaps = 25/142 (17%)

Query: 6   VTTYRGLVSAQQHREEIIQ---------DLFTVQQ-DPTRGPVNAGMIRDGVSEGQFSHV 55
           +   R         E +               V +  P R   N  M  +       +  
Sbjct: 300 ILLLRDGRITNNEEEGLKYISEMFDIEVVTMDVIKNHPVRAFANMKMYFNL----GGAIY 355

Query: 56  LLSEMDAIRKGTSRPVHYHVLFD--------ENKFTADNLQKLTNNLCYTLTSKFCFQSA 107
           L+     +++    P+   +           E +            L             
Sbjct: 356 LIPH--KLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGSISADMR 413

Query: 108 VP-PAYYAHLAAFRARYYIEGE 128
           +P P +YAH  A   R   + +
Sbjct: 414 LPAPVHYAHKFANAIRNEWKIK 435

>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Hypothetical protein AF1318
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 52.7 bits (126), Expect = 2e-09
 Identities = 7/59 (11%), Positives = 14/59 (23%), Gaps = 5/59 (8%)

Query: 66  GTSRPVHYHVLFDEN-----KFTADNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAF 119
              +P+   ++ D             +      L       F  ++      Y  L A 
Sbjct: 249 TPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAG 307

>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Hypothetical protein AF1318
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.3 bits (86), Expect = 5e-04
 Identities = 6/68 (8%), Positives = 15/68 (22%), Gaps = 9/68 (13%)

Query: 7   TTYRGLVSAQQHREEIIQDLFTV---------QQDPTRGPVNAGMIRDGVSEGQFSHVLL 57
           T     +S      E +  L +          + +P        +   G           
Sbjct: 115 TMLWNEISPIVTSSEYLTYLKSTIKKVVYGFKKSNPDWDVEKLTLHVSGKRPKMKDGETK 174

Query: 58  SEMDAIRK 65
              + + +
Sbjct: 175 ILKETVEE 182

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	167
d1yvua2	392	Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax	99.93
d1w9ha1	316	Hypothetical protein AF1318 {Archaeoglobus fulgidu	99.91
d1u04a2	447	Argonaute homologue PF0537 {Pyrococcus furiosus [T	99.9

>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.93  E-value=3.3e-26  Score=199.06  Aligned_cols=115  Identities=17%  Similarity=0.095  Sum_probs=95.1

Q ss_pred             CCCCceeeeEeeeeCCchhHHHhHHH----HhhccC-CCCceeeEEecCCChhhHHHHHHHHHHhhhc------------
Q 038471            3 WPAVTTYRGLVSAQQHREEIIQDLFT----VQQDPT-RGPVNAGMIRDGVSEGQFSHVLLSEMDAIRK------------   65 (167)
Q Consensus         3 ~~~~t~Y~s~~~~Q~~r~Eii~~L~~----~~~~~~-~~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~------------   65 (167)
                      |.. ..++.....|..++|++.+|..    .+++.+ +.|.+|||||||+..+       +|+++|++            
T Consensus       211 ~g~-~~~~~~~~~~~~~ee~~~~~~~~~l~~~~~~~~~~P~rIIi~RdG~~~~-------~El~~i~~a~~~~~pki~~I  282 (392)
T d1yvua2         211 KGE-LVRYYLTSYPAFGEKLTEKAIGDVFSLLEKLGFKKGSKIVVHRDGRLYR-------DEVAAFKKYGELYGYSLELL  282 (392)
T ss_dssp             TSC-EEEEEEEEECSCTTHHHHHHHHHHHHHHHHTTCCTTCEEEEEESSCCCH-------HHHHHHHHHHHHHTCEEEEE
T ss_pred             CCC-EEEEEEEecCCccHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCcH-------HHHHHHHHHHHhcCCcEEEE
Confidence            444 4455667778888888777533    344444 3499999999998654       57888776            


Q ss_pred             ---------------------------------------cCCCceeEEEeeCCCCCCHHHHHHHHHHHHhhhhccCCCCc
Q 038471           66 ---------------------------------------GTSRPVHYHVLFDENKFTADNLQKLTNNLCYTLTSKFCFQS  106 (167)
Q Consensus        66 ---------------------------------------GTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vs  106 (167)
                                                             ||++|+||+|++|++  +.|+||++||.|||+|+||+++||
T Consensus       283 vV~Krh~~Rff~~~~~~~Gt~v~~~~~~~~~~~s~~~~qGT~rP~~Y~vl~d~~--~~d~l~~lt~~Lc~l~~~~t~svs  360 (392)
T d1yvua2         283 EIIKRNNPRFFSNEKFIKGYFYKLSEDSVILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSSFQPIK  360 (392)
T ss_dssp             EEECSSCCCEECSCSCCTTEEEEBSSSEEEECCSCCCSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGGGCCSSSCCC
T ss_pred             EEEecCCeeecCCCCCCCCCEEeCCCCeEEEEEcCCcCCCCCCCcEEEEECCCC--CHHHHHHHHHHHHhhccCcCCCCe
Confidence                                                   999999999999986  569999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHhhhhc
Q 038471          107 AVPPAYYAHLAAFRARYYIEG  127 (167)
Q Consensus       107 ~p~P~~yA~~~a~r~r~~l~~  127 (167)
                      +|+|+||||++|+|+|.+++.
T Consensus       361 lPapi~YA~~lA~~~r~~~~p  381 (392)
T d1yvua2         361 LPATVHYSDKITKLMLRGIEP  381 (392)
T ss_dssp             SCTTTTTHHHHHHHHHTCSSC
T ss_pred             eCHHHHHHHHHHHHHhhcCCc
Confidence            999999999999999998864

>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Hypothetical protein AF1318
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.91  E-value=2.6e-25  Score=186.09  Aligned_cols=122  Identities=10%  Similarity=-0.031  Sum_probs=106.1

Q ss_pred             CCceeeeEeeeeCCchhHHHhHHHHhhcc-------CCC--CceeeEEecCCChhhHHHHHHHHHHhhhc----------
Q 038471            5 AVTTYRGLVSAQQHREEIIQDLFTVQQDP-------TRG--PVNAGMIRDGVSEGQFSHVLLSEMDAIRK----------   65 (167)
Q Consensus         5 ~~t~Y~s~~~~Q~~r~Eii~~L~~~~~~~-------~~~--p~~iiiyRDGVsegq~~~v~~~Ev~~i~~----------   65 (167)
                      +.++|++.+..|..++|+++.|.+++.+.       +++  |..|++||||+++|+++..++.|..+|++          
T Consensus       113 ~~~~~~~~~~~~~~~~e~~~~l~~~~~~~l~~~~~~~~~~~p~~Ii~~r~g~~~~~~~~e~~~~~~ai~~~~~~~~~~~~  192 (316)
T d1w9ha1         113 DGTMLWNEISPIVTSSEYLTYLKSTIKKVVYGFKKSNPDWDVEKLTLHVSGKRPKMKDGETKILKETVEELKKQEMVSRD  192 (316)
T ss_dssp             TSCEEEEEECCCEEGGGHHHHHHHHHHHHHHHHHHHCTTCCCCEEEEEEESSCCCCHHHHHHHHHHHHHHHHHTTSSCTT
T ss_pred             CCCEEEEEEEEecCCCchHHHHHHHHHHHHHHHHHHhCCCCCcceEEEECCcccchHHHHHHHHHHHHHHHHHhhccCCC
Confidence            46889999999999999999988766543       233  67888999999999999988888888865          


Q ss_pred             --------------------------------------------------------cCCCceeEEEeeCCCCCC-----H
Q 038471           66 --------------------------------------------------------GTSRPVHYHVLFDENKFT-----A   84 (167)
Q Consensus        66 --------------------------------------------------------GTarPt~Y~Vl~d~~~~~-----~   84 (167)
                                                                              |+++|+||.|++|++..+     .
T Consensus       193 pk~~~I~V~Kr~~~R~f~~~~~~~np~~GTvVd~~~~~~~~~~~~~~~~~q~~~~~~~~~P~~y~v~~d~~~~~~~~~~~  272 (316)
T d1w9ha1         193 VKYAILHLNETHPFWVMGDPNNRFHPYEGTKVKLSSKRYLLTLLQPYLKRNGLEMVTPIKPLSVEIVSDNWTSEEYYHNV  272 (316)
T ss_dssp             CEEEEEEEEECCCEEEC-------CCSSSCEEESSSSEEEECCBCTTC-------CEEECCEEEEEEEECCCTTTHHHHH
T ss_pred             ccEEEEEEEeecccccccccccCcCCCCCCEEecCCCeeeeEecceeEeeeccCCCCCCcceEEEEEECCCCCCccccCH
Confidence                                                                    348999999999998753     5


Q ss_pred             HHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHhhhh
Q 038471           85 DNLQKLTNNLCYTLTSKFCFQSAVPPAYYAHLAAFRARYYIE  126 (167)
Q Consensus        85 d~lq~lt~~Lc~~y~~~~~~vs~p~P~~yA~~~a~r~r~~l~  126 (167)
                      |.||++||+|||+|+|++++||+|+||||||++|++++...+
T Consensus       273 ~~l~~~~y~L~~~~~~~t~~v~~Papi~YA~~lA~lvg~~~r  314 (316)
T d1w9ha1         273 HEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNR  314 (316)
T ss_dssp             HHHHHHHHHHTTCCTTSSSCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccCCCCCcCccchhhHHHHHHHHHHHHHhh
Confidence            899999999999999999999999999999999999988653

>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue PF0537
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.90  E-value=8.7e-25  Score=193.10  Aligned_cols=117  Identities=13%  Similarity=0.023  Sum_probs=95.2

Q ss_pred             CCceeeeEeeeeCCchhHHHhH------HHHhhccC-C-CCceeeEEecCCChhhHHHHHHHHHHhhhc-----------
Q 038471            5 AVTTYRGLVSAQQHREEIIQDL------FTVQQDPT-R-GPVNAGMIRDGVSEGQFSHVLLSEMDAIRK-----------   65 (167)
Q Consensus         5 ~~t~Y~s~~~~Q~~r~Eii~~L------~~~~~~~~-~-~p~~iiiyRDGVsegq~~~v~~~Ev~~i~~-----------   65 (167)
                      +.++|++.+..|.+++|+++..      ...+.+.+ + .|.+|+|||||+       |.++|+++|++           
T Consensus       257 g~~~~~s~v~~q~~~~E~idl~~~i~~aL~~~~~~n~~~~P~rIIIyRDG~-------v~~~Ei~~ike~~~~~~pki~f  329 (447)
T d1u04a2         257 GYIRKIVPIKIGEQRGESVDMNEFFKEMVDKFKEFNIKLDNKKILLLRDGR-------ITNNEEEGLKYISEMFDIEVVT  329 (447)
T ss_dssp             SCEEEEEEEECCCCSSSSCCHHHHHHHHHHHHHHTTCCCTTCEEEEECSBC-------CCHHHHHHHHHHHHHHTCEEEE
T ss_pred             CceEEEEEEEccCCCCceecHHHHHHHHHHHHHHHhCCCCCceEEEEECCe-------ecHHHHHHHHHHHHhcCCcEEE
Confidence            4688999999999998877521      11223333 3 388999999996       34456666665           


Q ss_pred             ----------------------------------cCCCceeEEEeeC--------CCCCCHHHHHHHHHHHHhhhhcc-C
Q 038471           66 ----------------------------------GTSRPVHYHVLFD--------ENKFTADNLQKLTNNLCYTLTSK-F  102 (167)
Q Consensus        66 ----------------------------------GTarPt~Y~Vl~d--------~~~~~~d~lq~lt~~Lc~~y~~~-~  102 (167)
                                                        ||++|+||.|+.|        +.++++|++|++||.|||+|++| +
T Consensus       330 IvVqKr~~tR~F~d~~it~p~~~dfyLvsq~~~qgt~tPt~y~Vl~~~~~~~~~~~~~~~~dqlq~lTYkLchLyyn~~~  409 (447)
T d1u04a2         330 MDVIKNHPVRAFANMKMYFNLGGAIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGSIS  409 (447)
T ss_dssp             EEEESCCCCCBSSCSCEEEEETTEEEEECSCCSSSCSCCCCEEEEEEEEEETTEEEECCCCHHHHHHHHHHHTCCTTCSS
T ss_pred             EEEEecCCCcEEECCceeccCCCCeEEEeeccccceEecceEEEEEeccccccCCCCCcCHHHHHHHHHHhhhhcccCCC
Confidence                                              9999999999987        56799999999999999998876 5


Q ss_pred             CCCcccchHHHHHHHHHHHHhhhhcc
Q 038471          103 CFQSAVPPAYYAHLAAFRARYYIEGE  128 (167)
Q Consensus       103 ~~vs~p~P~~yA~~~a~r~r~~l~~~  128 (167)
                      ++|++||||||||+||++.+..++.+
T Consensus       410 gtvRvPAP~~YAHKLA~lvgq~l~~~  435 (447)
T d1u04a2         410 ADMRLPAPVHYAHKFANAIRNEWKIK  435 (447)
T ss_dssp             CCCCSCHHHHHHHHHHHHHHTTCCCC
T ss_pred             CCeeeChHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999998763