Citrus Sinensis ID: 038474

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------
Protein Sequence
VYIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYRGEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAAAWPMNSSKNTQAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDNSTCSKGSEKTSPKDLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFDGSHIVRSPIVF
Secondary Structure (PSIPRED)
cEEEEcccccccccccHHHHHHHHHHHcccccccccEEEEEccEEEEEEEEccHHHHHHHHccccEEEEEccccccccccccccccccccccccccccccccEEEEcccEEcccccccccccccccccccEEEcccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccHHHHHHHHHHHccccEEEEEccccccccccccHHHHHHHHHHHcccEEEEcccccccccccEEEccccEEEEEcccccccEEEEEEEcccEEEEEEEEEEcccccccEEEEEEccccccccccccccccccccEEEEccccccHHHEEcccEEEEEEEcccccccccccccccEEEEccccccHHHHHHHHHHHHHHcccccccEEEEEcEEEEccccccEEEEcccccccccccccccccccccccEEEEEccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccEEEccccccccccccccccccccccccEEEEccccccEEEEEEEEEEEccccccEEEEEEEccccEEEEEEEcEEEEEEcccEEEEEEEEEEEccccccEEEEEEEEEcccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccccHHHHHHHHHHHccccccccHEEEEEcccEcEEEEEccHHHHHHHHccccEEEEcccccEEEcccccHHHccccccccccccccccEEEEEEccccccccccccccccccccccccEEEccccccccccEEEEEHHEccccHHccccccccccccccHccccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHccEEEEEEccccccccccEcccccEEEEEEccccccccccEEEEccccEEEEEEEcccccccccEEEEEEcccccccHHcccccccccccEEEEEEcccccHHEHHcccEEEEEEcccccccccccccccccccccccHEccHHHHHHHHHHHHcccccccEEEEEcccEcccccccEEEEEcccccccccHHHccccccccccEEEEEcccccccccccccccEEEEEEEccHHHHHHHHHcccHHHHcccccccccccccccHHHcccccEEEEccHHHHHHHHHHccccHHHHHHHccccccccccccccccccccccEEEEEccccccEEEEEEEEEEEccccccEEEEEEEccccEEEEEEccEEEEEEcccEEEEEEEEEEEccccccEEEEEEEEEcccEEEEccEEc
Coil and Loop (DISEMBL)
vyivymgslpegeylpsshhQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMkgvvsvfpsrtlqlhttrswdfmgfnesitqrrtvESDLIVGVidtgiwpqsesfsdegfgpapkkwkgacdggknftcnnkiigaryysfrddgngsaideeghgsntastaagnkvkdasflgigqgmarggvpsariSAYRGEKILAAFDDAIADGVDIITislgdtsavdlAHDVIAIGAFHAMTKGILTvnsagnngpkagftssiaPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINafthkgkmfpllygkgvtnsssctedYANLVKgnivlcdefsgyhVAREAGaaglilkdnrlynvslilpfpastvtpdkfnSIIHQFYQVIMNFLRSSiilnpqaeilktsvikdsdapivasfssrgpnkyvpdilkpdisapgvnilaaysplapisrdiederHVKYniisgtsmacphaaawpmnsskntqaefaygsghinpvkatnpglvyEAFKQDYINMLCSmgydvdklrtisgdnstcskgsektspkdlnypsmaaqvssgesftikfprtvtniglpnstykARILqnskisvnvvpevlsfrslnekkSFIVTVTGKGLASGSIVSAALVWfdgshivrspivf
Flexible Loop (DISEMBL)
VYIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQlhttrswdfmgfnesitqrrtvesDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHgsntastaagnkVKDASFLGIGQGMARGGVPSARISAYRGEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEILKtsvikdsdapivasfssrgpnkyvPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAAAWPMNSSKNTQAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGdnstcskgsektspkdlnypSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLsfrslnekkSFIVTVTGKGLASGSIVSAALVwfdgshivrspivf
Low Complexity Region (SEG)
VYIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYRGEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAAAWPMNSSKNTQAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDNSTCSKGSEKTSPKDLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFDGSHIVRSPIVF
Disordered region (IsUnstruct)
**IVYMG******************EVVE**SAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQS*******FGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR*****************************SFLGIGQGMARGGVPSARISAYRGEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAAAWPM******QAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTI*********************************FTIKFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFDGSHIVRS****
Disordered Region (DISOPRED)
VYIVYM*S*****************************VRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQLHTTRSWDFMGFNE***********LIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYRGEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAP******DERHVKYNIISGTSMACPHAAAWPMNSSKNTQAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDNSTCSKGSEKTSPKDLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFDGSHIVRSPIVF
Disordered Region (DISEMBL)
VYIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYRGEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAAAWPMNSSKNTQAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDN************KDLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFDGSHIVRSPIVF
Disordered Region (DISPRO)
VYIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNG*******HGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYRGEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAAAWPMNSSKNTQAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDNSTCSKGSEKTSPKDLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFDGSHIVRSPIVF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VYIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYRGEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAAAWPMNSSKNTQAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDNSTCSKGSEKTSPKDLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFDGSHIVRSPIVF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	667	2.2.26 [Sep-21-2011]
Q39547	731	Cucumisin OS=Cucumis melo	N/A	no	0.964	0.879	0.462	1e-165
Q9LLL8	749	Xylem serine proteinase 1	no	no	0.974	0.867	0.404	1e-125
O65351	757	Subtilisin-like protease	no	no	0.968	0.853	0.373	1e-118
O64495	775	Subtilisin-like protease	no	no	0.941	0.810	0.344	3e-94
P29141	806	Minor extracellular prote	yes	no	0.589	0.487	0.253	1e-14
Q02470	1902	PII-type proteinase OS=La	N/A	no	0.661	0.231	0.237	7e-08
P16271	1902	PI-type proteinase OS=Lac	N/A	no	0.658	0.230	0.234	8e-08
P15293	1902	PII-type proteinase OS=La	N/A	no	0.661	0.231	0.233	3e-07
P15292	1962	PIII-type proteinase OS=L	yes	no	0.661	0.224	0.231	5e-07
P0DD35	1169	C5a peptidase OS=Streptoc	yes	no	0.517	0.295	0.244	3e-06

>sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1

 Score =  581 bits (1498), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 331/715 (46%), Positives = 440/715 (61%), Gaps = 72/715 (10%)

Query: 1   VYIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKL 60
           +YIVYMG   E       HH+++LE+VV  + A   ++ +YKRSFNGFA KLT+ E +K+
Sbjct: 33  IYIVYMGRKLEDPDSAHLHHRAMLEQVVGSTFAPESVLHTYKRSFNGFAVKLTEEEAEKI 92

Query: 61  AGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSD 120
           A M+GVVSVF +   +LHTTRSWDF+GF  ++ +R  VES+++VGV+DTGIWP+S SF D
Sbjct: 93  ASMEGVVSVFLNEMNELHTTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDD 152

Query: 121 EGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSF-----RDDGNGSAIDEEGHGSNTAST 175
           EGF P P KWKG C+   NF CN KIIGAR Y         D NG   D  GHG++TAST
Sbjct: 153 EGFSPPPPKWKGTCETSNNFRCNRKIIGARSYHIGRPISPGDVNGPR-DTNGHGTHTAST 211

Query: 176 AAGNKVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIADGVDIIT 227
           AAG  V  A+  G+G G ARGGVP ARI+AY+           ILAA+DDAIADGVDII+
Sbjct: 212 AAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIIS 271

Query: 228 ISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTD 287
           +S+G  +      D IAIG+FHA+ +GILT NSAGN GP    T+S++PWL+SVAAST D
Sbjct: 272 LSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMD 331

Query: 288 RLFVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTN-------SSSCTEDYA--N 338
           R FV +V +GNG++     SIN F +  + +PL+ G+ + N       S  CT+     N
Sbjct: 332 RKFVTQVQIGNGQSF-QGVSINTFDN--QYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPN 388

Query: 339 LVKGNIVLCDEFSGYHVAREA--GAAGLILKDN-RLYNVSLILPFPASTVTPDKFNSIIH 395
           L+KG IV+C+   G H   ++  GAAG+++  N R Y  S   P P+S + P+   + + 
Sbjct: 389 LLKGKIVVCEASFGPHEFFKSLDGAAGVLMTSNTRDYADS--YPLPSSVLDPNDLLATLR 446

Query: 396 QFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPG 455
             Y           I +P A I K++ I ++ AP+V SFSSRGPN+   D++KPDIS PG
Sbjct: 447 YIYS----------IRSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPG 496

Query: 456 VNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPH----------------------- 492
           V ILAA+  +AP+       R+  +NIISGTSM+CPH                       
Sbjct: 497 VEILAAWPSVAPVG---GIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSA 553

Query: 493 --AAAWPMNSSKNTQAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRT 550
               A PMN+  N QAEFAYGSGH+NP+KA  PGLVY+A + DY+  LC  GY+   +R 
Sbjct: 554 LMTTASPMNARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRR 613

Query: 551 ISGDNSTCSKGSEKTSPKDLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQN 610
           I+GD S C+ G+      DLNYPS    VS  ++F   F RT+T++    STY+A I   
Sbjct: 614 ITGDYSACTSGNTGRV-WDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAP 672

Query: 611 SKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFDGSHIVRSPI 665
             ++++V P VLSF  L ++KSF +TV  +G   G +VSA+LVW DG H VRSPI
Sbjct: 673 QGLTISVNPNVLSFNGLGDRKSFTLTV--RGSIKGFVVSASLVWSDGVHYVRSPI 725

Cucumis melo (taxid: 3656)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 2EC: 5

>sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1

 Score =  450 bits (1158), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 292/722 (40%), Positives = 403/722 (55%), Gaps = 72/722 (9%)

Query: 2   YIVYMGSLPEGEYLPSSHHQSILEEV-VEGSSAENILVRSYKRSFNGFAAKLTDHEIQKL 60
           YI+Y+G  P+        H ++L  + +    A+   V SY ++FN FAAKL+ HE +K+
Sbjct: 38  YIIYLGDRPDNTEETIKTHINLLSSLNISQEEAKERKVYSYTKAFNAFAAKLSPHEAKKM 97

Query: 61  AGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSD 120
             M+ VVSV  ++  +LHTT+SWDF+G   +  +    E D+I+GV+DTGI P SESF D
Sbjct: 98  MEMEEVVSVSRNQYRKLHTTKSWDFVGLPLTAKRHLKAERDVIIGVLDTGITPDSESFLD 157

Query: 121 EGFGPAPKKWKGACDGGKNFT-CNNKIIGARYYSFRDDGN------GSAIDEEGHGSNTA 173
            G GP P KWKG+C   KNFT CNNKIIGA+Y  F+ DGN       S ID +GHG++T+
Sbjct: 158 HGLGPPPAKWKGSCGPYKNFTGCNNKIIGAKY--FKHDGNVPAGEVRSPIDIDGHGTHTS 215

Query: 174 STAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVD 224
           ST AG  V +AS  GI  G ARG VPSAR++ Y+            ILA F+ AI DGV+
Sbjct: 216 STVAGVLVANASLYGIANGTARGAVPSARLAMYKVCWARSGCADMDILAGFEAAIHDGVE 275

Query: 225 IITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAAS 284
           II+IS+G   A D + D I++G+FHAM KGILTV SAGN+GP +G  ++  PW+++VAAS
Sbjct: 276 IISISIGGPIA-DYSSDSISVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAAS 334

Query: 285 TTDRLFVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSS-------CTEDYA 337
             DR F  K+ LGNGK+      I+ F+ K K +PL+ G     ++        C  D  
Sbjct: 335 GIDRTFKSKIDLGNGKSF-SGMGISMFSPKAKSYPLVSGVDAAKNTDDKYLARYCFSDSL 393

Query: 338 NL--VKGNIVLCDEFSG---YHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNS 392
           +   VKG +++C    G     +    GA  +I+ D  L N  + +  PA++V       
Sbjct: 394 DRKKVKGKVMVCRMGGGGVESTIKSYGGAGAIIVSDQYLDNAQIFMA-PATSVN-SSVGD 451

Query: 393 IIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDIS 452
           II+++    +N  RS+      A I KT  +    AP VASFSSRGPN     +LKPDI+
Sbjct: 452 IIYRY----INSTRSA-----SAVIQKTRQVT-IPAPFVASFSSRGPNPGSIRLLKPDIA 501

Query: 453 APGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA------------------ 494
           APG++ILAA++    ++    D +  K+ I+SGTSMACPH A                  
Sbjct: 502 APGIDILAAFTLKRSLTGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAI 561

Query: 495 -------AWPMNSSKNTQAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDK 547
                  A P++   N  AEFAYG G INP +A +PGLVY+     Y+  LC  GY+   
Sbjct: 562 KSAIITSAKPISRRVNKDAEFAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATT 621

Query: 548 LRTISGDNS-TCSKGSEKTSPKDLNYPSMAAQVSSGESFTIK-FPRTVTNIGLPNSTYKA 605
           L  + G  S +CS          LNYP++   + S ++ T+  F R VTN+G P+S Y A
Sbjct: 622 LAPLVGTRSVSCSSIVPGLGHDSLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTA 681

Query: 606 RILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFDGSHIVRSPI 665
            +     + + V P+ LSF   ++K+SF V V  K +  G IVS  LVW    H VRSPI
Sbjct: 682 TVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSPI 741

Query: 666 VF 667
           V 
Sbjct: 742 VI 743

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1

 Score =  427 bits (1097), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 276/739 (37%), Positives = 396/739 (53%), Gaps = 93/739 (12%)

Query: 2   YIVYMG--SLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQK 59
           YIV+M    +P    L S+ + S L  + +  SAE  L+ +Y+ + +GF+ +LT  E   
Sbjct: 32  YIVHMAKSQMPSSFDLHSNWYDSSLRSISD--SAE--LLYTYENAIHGFSTRLTQEEADS 87

Query: 60  LAGMKGVVSVFPSRTLQLHTTRSWDFMGFNE---SITQRRTVESDLIVGVIDTGIWPQSE 116
           L    GV+SV P    +LHTTR+  F+G +E    +       SD++VGV+DTG+WP+S+
Sbjct: 88  LMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTADLFPEAGSYSDVVVGVLDTGVWPESK 147

Query: 117 SFSDEGFGPAPKKWKGACDGGKNFT---CNNKIIGARYYSFRDDGNGSAIDE-------- 165
           S+SDEGFGP P  WKG C+ G NFT   CN K+IGAR+++   +     IDE        
Sbjct: 148 SYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLIGARFFARGYESTMGPIDESKESRSPR 207

Query: 166 --EGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAF 215
             +GHG++T+STAAG+ V+ AS LG   G ARG  P AR++ Y+           ILAA 
Sbjct: 208 DDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRARVAVYKVCWLGGCFSSDILAAI 267

Query: 216 DDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIA 275
           D AIAD V+++++SLG   + D   D +AIGAF AM +GIL   SAGN GP +   S++A
Sbjct: 268 DKAIADNVNVLSMSLGGGMS-DYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVA 326

Query: 276 PWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSS---C 332
           PW+ +V A T DR F    +LGNGK               K+ P +Y    +N+++   C
Sbjct: 327 PWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEALPDKLLPFIYAGNASNATNGNLC 386

Query: 333 TED--YANLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYNVSLILP---FPA 382
                    VKG IV+CD           V + AG  G+IL +       L+      PA
Sbjct: 387 MTGTLIPEKVKGKIVMCDRGINARVQKGDVVKAAGGVGMILANTAANGEELVADAHLLPA 446

Query: 383 STVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKY 442
           +TV  +K   II  +     N   S  IL         +V+    +P+VA+FSSRGPN  
Sbjct: 447 TTVG-EKAGDIIRHYVTTDPNPTASISILG--------TVVGVKPSPVVAAFSSRGPNSI 497

Query: 443 VPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAAA------- 495
            P+ILKPD+ APGVNILAA++  A  +    D R V++NIISGTSM+CPH +        
Sbjct: 498 TPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALLKS 557

Query: 496 ----WP--------MNSSKNTQAE---------------FAYGSGHINPVKATNPGLVYE 528
               W         M ++  T  +               F +G+GH++P  ATNPGL+Y+
Sbjct: 558 VHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYD 617

Query: 529 AFKQDYINMLCSMGYDVDKLRTISGDNSTCSKGSEKTSPKDLNYPSMAAQVSSGESFTIK 588
              +DY+  LC++ Y   ++R++S  N TC   S+  S  DLNYPS A  V    ++  K
Sbjct: 618 LTTEDYLGFLCALNYTSPQIRSVSRRNYTCDP-SKSYSVADLNYPSFAVNVDGVGAY--K 674

Query: 589 FPRTVTNIGLPNSTYKARIL-QNSKISVNVVPEVLSFRSLNEKKSFIVTVT-GKGLASGS 646
           + RTVT++G    TY  ++  + + + ++V P VL+F+  NEKKS+ VT T      SGS
Sbjct: 675 YTRTVTSVG-GAGTYSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGS 733

Query: 647 IVSAALVWFDGSHIVRSPI 665
               ++ W DG H+V SP+
Sbjct: 734 NSFGSIEWSDGKHVVGSPV 752

Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1

 Score =  346 bits (888), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 254/738 (34%), Positives = 363/738 (49%), Gaps = 110/738 (14%)

Query: 20  HQSILEEVVEG-----SSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRT 74
           H S L+E V G         + L+ SY  +  GFAA+LT+ E + L     VV+V P   
Sbjct: 49  HLSFLQEAVLGVEEEEEEPSSRLLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHV 108

Query: 75  LQLHTTRSWDFMGF----NESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKW 130
           LQ+ TT S+ F+G     N  +  +       I+GV+DTG+WP+S SF D G    P+KW
Sbjct: 109 LQVQTTYSYKFLGLDGFGNSGVWSKSRFGQGTIIGVLDTGVWPESPSFDDTGMPSIPRKW 168

Query: 131 KGACDGGKNFT---CNNKIIGARYY--------SFRDDGNG-----SAIDEEGHGSNTAS 174
           KG C  G++F+   CN K+IGAR++        S  +  N      SA D  GHG++TAS
Sbjct: 169 KGICQEGESFSSSSCNRKLIGARFFIRGHRVANSPEESPNMPREYISARDSTGHGTHTAS 228

Query: 175 TAAGNKVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIADGVDII 226
           T  G+ V  A+ LG G G+ARG  P A I+ Y+           ILAA D AI D VD++
Sbjct: 229 TVGGSSVSMANVLGNGAGVARGMAPGAHIAVYKVCWFNGCYSSDILAAIDVAIQDKVDVL 288

Query: 227 TISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTT 286
           ++SLG    + L  D IAIG F AM +GI  + +AGNNGP     ++ APW+ ++ A T 
Sbjct: 289 SLSLGGF-PIPLYDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTL 347

Query: 287 DRLFVDKVVLGNGKTIVVR--YSINAFTHKGKMFPLLYGKGVTNSSS-CTEDY--ANLVK 341
           DR F   V L NGK +     Y      + G+   ++Y  G    S  C         ++
Sbjct: 348 DRRFPAVVRLANGKLLYGESLYPGKGIKNAGREVEVIYVTGGDKGSEFCLRGSLPREEIR 407

Query: 342 GNIVLCDE-FSGY----HVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSI-IH 395
           G +V+CD   +G        +EAG   +IL               A+T    + +SI +H
Sbjct: 408 GKMVICDRGVNGRSEKGEAVKEAGGVAMIL---------------ANTEINQEEDSIDVH 452

Query: 396 QFYQVIMNFLRSSII-------LNPQAEIL-KTSVIKDSDAPIVASFSSRGPNKYVPDIL 447
                ++ +  S ++       + P+A I+   +VI  S AP VA FS+RGP+   P IL
Sbjct: 453 LLPATLIGYTESVLLKAYVNATVKPKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSIL 512

Query: 448 KPDISAPGVNILAAYSP-LAPISRDIEDERHVKYNIISGTSMACPHAA--------AWP- 497
           KPD+ APGVNI+AA+   L P      D R V + ++SGTSM+CPH +        A+P 
Sbjct: 513 KPDMIAPGVNIIAAWPQNLGPTGLPY-DSRRVNFTVMSGTSMSCPHVSGITALIRSAYPN 571

Query: 498 -----MNSSKNTQAE------------------FAYGSGHINPVKATNPGLVYEAFKQDY 534
                + S+  T A+                  FA G+GH+NP KA NPGLVY     DY
Sbjct: 572 WSPAAIKSALMTTADLYDRQGKAIKDGNKPAGVFAIGAGHVNPQKAINPGLVYNIQPVDY 631

Query: 535 INMLCSMGYDVDKLRTISGDNSTCSKGSEKTSPKDLNYPSMAAQVSSGESFTIKFPRTVT 594
           I  LC++G+    +  I+  N +C+    K     LNYPS+A     G++ T    R VT
Sbjct: 632 ITYLCTLGFTRSDILAITHKNVSCNGILRKNPGFSLNYPSIAVIFKRGKT-TEMITRRVT 690

Query: 595 NIGLPNSTYKARILQNSKISVNVVPEVLSFRSLNEKKS----FIVTVTGKGLASGSIVSA 650
           N+G PNS Y   +     I V V P+ L F+ +++  S    F++    +G    S    
Sbjct: 691 NVGSPNSIYSVNVKAPEGIKVIVNPKRLVFKHVDQTLSYRVWFVLKKKNRGGKVASFAQG 750

Query: 651 ALVWFDGSHI---VRSPI 665
            L W +  ++   VRSPI
Sbjct: 751 QLTWVNSHNLMQRVRSPI 768

Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE).

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1

 Score = 82.0 bits (201), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 127/501 (25%), Positives = 212/501 (42%), Gaps = 108/501 (21%)

Query: 39  RSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQLHTTRSWD-------------- 84
           R Y++ F+GF+ KL  +EI KL  +K V +V+P+ T +    +  D              
Sbjct: 104 REYEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYKTDNMKDKDVTISEDAVSPQMDD 163

Query: 85  ---FMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFT 141
              ++G N++     T +  + V +IDTG+         E   P  KK  G    G +F 
Sbjct: 164 SAPYIGANDAWDLGYTGKG-IKVAIIDTGV---------EYNHPDLKKNFGQYK-GYDFV 212

Query: 142 CNNKIIGARYYSFRD----DGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGG 197
            N+       Y  ++    D  G A D   HG++ A T A N            G  +G 
Sbjct: 213 DND-------YDPKETPTGDPRGEATD---HGTHVAGTVAAN------------GTIKGV 250

Query: 198 VPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAF 248
            P A + AYR          E ++A  + A+ DG D++ +SLG++  ++      +    
Sbjct: 251 APDATLLAYRVLGPGGSGTTENVIAGVERAVQDGADVMNLSLGNS--LNNPDWATSTALD 308

Query: 249 HAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKVVLGNG---KTIVVR 305
            AM++G++ V S GN+GP      S      +++   T +L +++  +  G      V+ 
Sbjct: 309 WAMSEGVVAVTSNGNSGPNGWTVGSPGTSREAISVGAT-QLPLNEYAVTFGSYSSAKVMG 367

Query: 306 YS----INAFTHKGKMFPLLYGKGVTNS---SSCTEDYANLVKGNIVLCDEFSGYHVARE 358
           Y+    + A  +K ++  +  G G          T   A + +G+I   D+      A++
Sbjct: 368 YNKEDDVKALNNK-EVELVEAGIGEAKDFEGKDLTGKVAVVKRGSIAFVDKADN---AKK 423

Query: 359 AGAAGLILKDNRLYNVSLILP---FPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQA 415
           AGA G+++ +N    +   +P    P   ++ +    ++            S++      
Sbjct: 424 AGAIGMVVYNNLSGEIEANVPGMSVPTIKLSLEDGEKLV------------SALKAGETK 471

Query: 416 EILKTSVIKDSDAPIVASFSSRGPNKYVPD--ILKPDISAPGVNILAAYSPLAPISRDIE 473
              K +V K +    VA FSSRGP   V D  ++KPDISAPGVNI++      P      
Sbjct: 472 TTFKLTVSK-ALGEQVADFSSRGP---VMDTWMIKPDISAPGVNIVSTIPTHDP------ 521

Query: 474 DERHVKYNIISGTSMACPHAA 494
            +    Y    GTSMA PH A
Sbjct: 522 -DHPYGYGSKQGTSMASPHIA 541

Not required for growth or sporulation.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q02470|P2P_LACPA PII-type proteinase OS=Lactobacillus paracasei GN=prtP PE=1 SV=1

 Score = 59.7 bits (143), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 125/526 (23%), Positives = 203/526 (38%), Gaps = 85/526 (16%)

Query: 21  QSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQLHTT 80
           ++ +E+V + ++ E     SY    NGF+ K+   +I KL  + GV +V  ++       
Sbjct: 135 KAAVEQVTQQTAGE-----SYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTLAKVYYPTDA 189

Query: 81  RSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSES--FSDEGFGPAPK----KWKGAC 134
           ++          +  +      +V VIDTGI P  +    SD+      K    K+    
Sbjct: 190 KANSMANVQAVWSNYKYKGEGTVVSVIDTGIDPTHKDMRLSDDKDVKLTKYDVEKFTDTA 249

Query: 135 DGGKNFTCNNKI-IGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKVKD---ASFLGIG 190
             G+ FT   K+  G  Y    D      +DE+ HG + A     N   D    S +G+ 
Sbjct: 250 KHGRYFTS--KVPYGFNYADNNDTITDDTVDEQ-HGMHVAGIIGANGTGDDPTKSVVGVA 306

Query: 191 ---QGMARGGVPSARISAYRGEKIL-AAFDDAIADGVDIITISLGDTSAVDLAHDVIAIG 246
              Q +A     ++  SA  G   L +A +D+   G D++ +SLG  S      D     
Sbjct: 307 PEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPEIAA 366

Query: 247 AFHAMTKGILTVNSAGNNGPKAGFTSSI------------------APWLMSVAASTTDR 288
             +A   G   V SAGN+G     T  +                  +    +VA++    
Sbjct: 367 VQNANESGTAAVISAGNSGTSGSATQGVNKDYYGLQDNEMVGTPGTSRGATTVASAENTD 426

Query: 289 LFVDKVVLGNGKTI-----VVRYSINAFT--HKGKMFPLLYGKGVTNSSSCTEDYANLVK 341
           +    V + +GK +      ++ S N FT     K F ++       S     DY    K
Sbjct: 427 VISQAVTITDGKDLQLGPETIQLSSNDFTGSFDQKKFYVVKDASGDLSKGAAADYTADAK 486

Query: 342 GNIVLCDE----FSGYH-VAREAGAAGLILKDNR-----LYNVSLILPFPA---STVTPD 388
           G I +       F+     A+ AGAAGLI+ +N      L ++ L   FP    S+ T  
Sbjct: 487 GKIAIVKRGELNFADKQKYAQAAGAAGLIIVNNDGTATPLTSIRLTTTFPTFGLSSKTGQ 546

Query: 389 KFNSIIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILK 448
           K    +       +  ++ ++ L P  +  +           ++ F+S GP   +    K
Sbjct: 547 KLVDWVTAHPDDSLG-VKIALTLLPNQKYTEDK---------MSDFTSYGPVSNLS--FK 594

Query: 449 PDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA 494
           PDI+APG NI +              + +  Y  +SGTSMA P  A
Sbjct: 595 PDITAPGGNIWST-------------QNNNGYTNMSGTSMASPFIA 627

Protease which breaks down milk proteins during the growth of the bacteria on milk.

Lactobacillus paracasei (taxid: 1597)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 6

>sp|P16271|P1P_LACLC PI-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prtP PE=3 SV=1

 Score = 59.7 bits (143), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 124/528 (23%), Positives = 206/528 (39%), Gaps = 89/528 (16%)

Query: 21  QSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQLHTT 80
           ++ +E+V + ++ E     SY    NGF+ K+   +I KL  + GV +V  ++       
Sbjct: 135 KAAVEQVTQQTAGE-----SYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTLAKVYYPTDA 189

Query: 81  RSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSES--FSDEGFGPAPK----KWKGAC 134
           ++          +  +      +V VID+GI P  +    SD+      K    K+    
Sbjct: 190 KANSMANVQAVWSNYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEKFTDTA 249

Query: 135 DGGKNFTCNNKI-IGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKVKD---ASFLGIG 190
             G+ F  N+K+  G  Y    D      +DE+ HG + A     N   D    S +G+ 
Sbjct: 250 KHGRYF--NSKVPYGFNYADNNDTITDDTVDEQ-HGMHVAGIIGANGTGDDPAKSVVGVA 306

Query: 191 ---QGMARGGVPSARISAYRGEKIL-AAFDDAIADGVDIITISLGDTSAVDLAHDVIAIG 246
              Q +A     ++  SA  G   L +A +D+   G D++ +SLG  S      D     
Sbjct: 307 PEAQLLAMKVFTNSDTSATTGSSTLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPELAA 366

Query: 247 AFHAMTKGILTVNSAGNNGPKAGFTSSI------------------APWLMSVAASTTDR 288
             +A   G   V SAGN+G     T  +                  +    +VA++    
Sbjct: 367 VQNANESGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMVGTPGTSRGATTVASAENTD 426

Query: 289 LFVDKVVLGNGKTI-----VVRYSINAFT--HKGKMFPLLYGKGVTNSSSCTEDYANLVK 341
           +    V + +G  +      ++ S N FT     K F ++       S     DY    K
Sbjct: 427 VITQAVTITDGTGLQLGPGTIQLSSNDFTGSFDQKKFYVVKDASGNLSKGALADYTADAK 486

Query: 342 GNIVLC-------DEFSGYHVAREAGAAGLILKDNR-----LYNVSLILPFPA---STVT 386
           G I +        D+   Y  A+ AGAAGLI+ +N      + +++L   FP    S+VT
Sbjct: 487 GKIAIVKRGELSFDDKQKY--AQAAGAAGLIIVNNDGTATPVTSMALTTTFPTFGLSSVT 544

Query: 387 PDKFNSIIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDI 446
             K    +       +  ++ ++ L P  +  +           ++ F+S GP   +   
Sbjct: 545 GQKLVDWVTAHPDDSLG-VKIALTLVPNQKYTEDK---------MSDFTSYGPVSNLS-- 592

Query: 447 LKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA 494
            KPDI+APG NI +              + +  Y  +SGTSMA P  A
Sbjct: 593 FKPDITAPGGNIWST-------------QNNNGYTNMSGTSMASPFIA 627

Protease which breaks down milk proteins during the growth of the bacteria on milk.

Lactococcus lactis subsp. cremoris (taxid: 1359)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P15293|P2P_LACLC PII-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prt PE=3 SV=1

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 123/526 (23%), Positives = 205/526 (38%), Gaps = 85/526 (16%)

Query: 21  QSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQLHTT 80
           ++ +E+V + ++ E     SY    NGF+ K+   +I KL  + GV +V  ++       
Sbjct: 135 KAAVEQVTQQTAGE-----SYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTLAKVYYPTDA 189

Query: 81  RSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSES--FSDEGFGPAPK----KWKGAC 134
           ++          +  +      +V VID+GI P  +    SD+      K    K+    
Sbjct: 190 KANSMANVQAVWSNYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEKFTDTA 249

Query: 135 DGGKNFTCNNKI-IGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKVKD---ASFLGIG 190
             G+ F  N+K+  G  Y    D      +DE+ HG + A     N   D    S +G+ 
Sbjct: 250 KHGRYF--NSKVPYGFNYADNNDTITDDTVDEQ-HGMHVAGIIGANGTGDDPAKSVVGVA 306

Query: 191 ---QGMARGGVPSARISAYRGEKIL-AAFDDAIADGVDIITISLGDTSAVDLAHDVIAIG 246
              Q +A     ++  SA  G   L +A +D+   G D++ +SLG  S      D     
Sbjct: 307 PEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPELAA 366

Query: 247 AFHAMTKGILTVNSAGNNGPKAGFTSSI------------------APWLMSVAASTTDR 288
             +A   G   V SAGN+G     T  +                  +    +VA++    
Sbjct: 367 VQNANESGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMVGTPGTSRGATTVASAENTD 426

Query: 289 LFVDKVVLGNGKTI-----VVRYSINAFT--HKGKMFPLLYGKGVTNSSSCTEDYANLVK 341
           +    V + +G  +      ++ S N FT     K F ++       S     DY    K
Sbjct: 427 VITQAVTITDGTGLQLGPETIQLSSNDFTGSFDQKKFYVVKDASGNLSKGKVADYTADAK 486

Query: 342 GNIVLCDE----FSGYH-VAREAGAAGLILKDNR-----LYNVSLILPFPA---STVTPD 388
           G I +       F+     A+ AGAAGLI+ +N      + +++L   FP    S+VT  
Sbjct: 487 GKIAIVKRGELTFADKQKYAQAAGAAGLIIVNNDGTATPVTSMALTTTFPTFGLSSVTGQ 546

Query: 389 KFNSIIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILK 448
           K    +       +  ++ ++ L P  +  +           ++ F+S GP   +    K
Sbjct: 547 KLVDWVAAHPDDSLG-VKIALTLVPNQKYTEDK---------MSDFTSYGPVSNLS--FK 594

Query: 449 PDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA 494
           PDI+APG NI +              + +  Y  +SGTSMA P  A
Sbjct: 595 PDITAPGGNIWST-------------QNNNGYTNMSGTSMASPFIA 627

Protease which breaks down milk proteins during the growth of the bacteria on milk.

Lactococcus lactis subsp. cremoris (taxid: 1359)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 6

>sp|P15292|P3P_LACLS PIII-type proteinase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=prtP PE=1 SV=2

 Score = 57.0 bits (136), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 122/526 (23%), Positives = 205/526 (38%), Gaps = 85/526 (16%)

Query: 21  QSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQLHTT 80
           ++ +E+V + ++ E     SY    NGF+ K+   +I KL  + GV +V  ++       
Sbjct: 135 KAAVEQVTQQTAGE-----SYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTLAKVYYPTDA 189

Query: 81  RSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSES--FSDEGFGPAPK----KWKGAC 134
           ++          +  +      +V VID+GI P  +    SD+      K    K+    
Sbjct: 190 KANSMANVQAVWSNYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEKFTDTA 249

Query: 135 DGGKNFTCNNKI-IGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKVKD---ASFLGIG 190
             G+ F  N+K+  G  Y    D      +DE+ HG + A     N   D    S +G+ 
Sbjct: 250 KHGRYF--NSKVPYGFNYADNNDTITDDTVDEQ-HGMHVAGIIGANGTGDDPAKSVVGVA 306

Query: 191 ---QGMARGGVPSARISAYRGEKIL-AAFDDAIADGVDIITISLGDTSAVDLAHDVIAIG 246
              Q +A     ++  SA  G   L +A +D+   G D++ +SLG  S      D     
Sbjct: 307 PEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPELAA 366

Query: 247 AFHAMTKGILTVNSAGNNGPKAGFTSSI------------------APWLMSVAASTTDR 288
             +A   G   V SAGN+G     T  +                  +    +VA++    
Sbjct: 367 VQNANESGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMVGSPGTSRGATTVASAENTD 426

Query: 289 LFVDKVVLGNGKTI-----VVRYSINAFT--HKGKMFPLLYGKGVTNSSSCTEDYANLVK 341
           +    V + +G  +      ++ S + FT     K F ++       S     DY    K
Sbjct: 427 VITQAVTITDGTGLQLGPETIQLSSHDFTGSFDQKKFYIVKDASGNLSKGALADYTADAK 486

Query: 342 GNIVLCD--EFS---GYHVAREAGAAGLILKDNR-----LYNVSLILPFPA---STVTPD 388
           G I +    EFS       A+ AGAAGLI+ +       + +++L   FP    S+VT  
Sbjct: 487 GKIAIVKRGEFSFDDKQKYAQAAGAAGLIIVNTDGTATPMTSIALTTTFPTFGLSSVTGQ 546

Query: 389 KFNSIIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILK 448
           K    +       +  ++ ++ + P  +  +           ++ F+S GP   +    K
Sbjct: 547 KLVDWVTAHPDDSLG-VKITLAMLPNQKYTEDK---------MSDFTSYGPVSNLS--FK 594

Query: 449 PDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA 494
           PDI+APG NI +              + +  Y  +SGTSMA P  A
Sbjct: 595 PDITAPGGNIWST-------------QNNNGYTNMSGTSMASPFIA 627

Protease which breaks down milk proteins during the growth of the bacteria on milk.

Lactococcus lactis subsp. cremoris (strain SK11) (taxid: 272622)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 6

>sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=scpA PE=3 SV=1

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 108/442 (24%), Positives = 188/442 (42%), Gaps = 97/442 (21%)

Query: 103 IVGVIDTGIWPQSESF-----SDEGFGPAPKKWKGACDGGKNFT--CNNKIIGARYYSFR 155
           +V VID G     E++     S   +       K   D G  +    N+K+  A Y+ + 
Sbjct: 127 VVAVIDAGFDKNHEAWRLTDKSKARYQSKEDLEKAKKDHGITYGEWVNDKV--AYYHDYS 184

Query: 156 DDGNGSAIDEEGHGSNTASTAAGN---KVKDASFLGIGQGMARGGVPSARISAYRGEKI- 211
            DG  +A+D+E HG++ +   +GN   + K+   L        G +P A++   R E + 
Sbjct: 185 KDGK-TAVDQE-HGTHVSGILSGNAPSETKEPYRL-------EGAMPEAQLLLMRVEIVN 235

Query: 212 ---------LAAFDDAIADGVDIITISLGDTSAVDLAH--DVIAIGAFHAMTKGILTVNS 260
                      A  DA+  G  +I +S G+ +A+  A+  D       +A +KG+  V S
Sbjct: 236 GLADYARNYAQAIRDAVNLGAKVINMSFGN-AALAYANLPDETKKAFDYAKSKGVSIVTS 294

Query: 261 AGNNG-------------PKAGF--TSSIAPWLMSVAASTTDRLFVD----KVVLGNGKT 301
           AGN+              P  G   T + A   ++VA+ + D+   +    K      K 
Sbjct: 295 AGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKE 354

Query: 302 IVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCD----EFSGYHV-A 356
           + V  S N F    K +   Y     N  +  +D+ + VKG I L +    +F      A
Sbjct: 355 MPV-LSTNRF-EPNKAYDYAYA----NRGTKEDDFKD-VKGKIALIERGDIDFKDKIANA 407

Query: 357 REAGAAGLILKDNRLYNVSLILP----FPASTVTPDKFNSIIHQFYQVIMNFLRSSIILN 412
           ++AGA G+++ DN+     + LP     PA+ ++  + + ++      + +  + +I  N
Sbjct: 408 KKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFIS--RKDGLL------LKDNSKKTITFN 459

Query: 413 PQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDI 472
              ++L T+         ++ FSS G        +KPDI+APG +IL++ +         
Sbjct: 460 ATPKVLPTAS-----GTKLSRFSSWGLT--ADGNIKPDIAAPGQDILSSVA--------- 503

Query: 473 EDERHVKYNIISGTSMACPHAA 494
               + KY  +SGTSM+ P  A
Sbjct: 504 ----NNKYAKLSGTSMSAPLVA 521

This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant.

Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 1

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	667
224106379	710	predicted protein [Populus trichocarpa]	0.968	0.909	0.591	0.0
359478595	717	PREDICTED: cucumisin-like [Vitis vinifer	0.976	0.907	0.569	0.0
297745991	705	unnamed protein product [Vitis vinifera]	0.976	0.923	0.569	0.0
255558936	2072	peptidase, putative [Ricinus communis] g	0.970	0.312	0.558	0.0
224106385	745	predicted protein [Populus trichocarpa]	0.959	0.859	0.538	0.0
296083990	741	unnamed protein product [Vitis vinifera]	0.971	0.874	0.552	0.0
359479070	744	PREDICTED: cucumisin-like [Vitis vinifer	0.971	0.870	0.552	0.0
297745988	1472	unnamed protein product [Vitis vinifera]	0.976	0.442	0.545	0.0
225434782	737	PREDICTED: cucumisin-like [Vitis vinifer	0.973	0.880	0.542	0.0
359478633	740	PREDICTED: cucumisin [Vitis vinifera]	0.979	0.882	0.547	0.0

>gi|224106379|ref|XP_002314147.1| predicted protein [Populus trichocarpa] gi|222850555|gb|EEE88102.1| predicted protein [Populus trichocarpa]

 Score =  816 bits (2109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/708 (59%), Positives = 511/708 (72%), Gaps = 62/708 (8%)

Query: 2   YIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLA 61
           YIVYMGSLPEGEY PSSHH S+L+EVV+ SS+EN+LVRSYKRSFNGF+AKLT  E QKL 
Sbjct: 7   YIVYMGSLPEGEYSPSSHHLSLLQEVVKDSSSENVLVRSYKRSFNGFSAKLTSEEAQKLV 66

Query: 62  GMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDE 121
             K VVS+FPS TLQL TTRSWDFMGFN + + +R   SD+IVGVIDTGIWP+SESF+D+
Sbjct: 67  SKKEVVSIFPSTTLQLQTTRSWDFMGFNVTASGKRGTHSDIIVGVIDTGIWPESESFNDD 126

Query: 122 GFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKV 181
           GFGP P+KW+GAC+GG+NFTCNNKIIGAR+YSF      SA D+ GHGS+TASTAAGN V
Sbjct: 127 GFGPPPRKWRGACEGGENFTCNNKIIGARHYSF-----SSARDDLGHGSHTASTAAGNIV 181

Query: 182 KDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIADGVDIITISLGDT 233
           K ASF G+ QG ARGGVPSARISAY+           IL+AFDDAIADGVDIITIS+G  
Sbjct: 182 KKASFYGLAQGTARGGVPSARISAYKVCGPGSCQSSDILSAFDDAIADGVDIITISIGGN 241

Query: 234 SAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDK 293
            A +   DVIAIG FH+M KGILT+ SAGN+GP +G  +S+APW+ +VAAS+TDR  +DK
Sbjct: 242 QAQEFDTDVIAIGGFHSMAKGILTLQSAGNDGPVSGSVASVAPWIFTVAASSTDRRIIDK 301

Query: 294 VVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNS----------SSCTEDYANLVKGN 343
           VVLGNGKT+V   S+N+F+ KGK FPL+YGKG +            S C +    LVKG 
Sbjct: 302 VVLGNGKTLVGN-SVNSFSLKGKKFPLVYGKGASRECKHLEASLCYSGCLDR--TLVKGK 358

Query: 344 IVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMN 403
           IVLCD+ +G   A+ AGA G IL  +   ++S ILP P  ++T DK N+        + +
Sbjct: 359 IVLCDDVNGRTEAKRAGALGAILPIS-FEDISFILPLPGLSLTEDKLNA--------VKS 409

Query: 404 FLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYS 463
           +L S+    P A ILK+  IKD+ AP VASFSSRGPN  + DILKPD SAPGV+ILAA+ 
Sbjct: 410 YLNST--KKPSANILKSEAIKDNAAPEVASFSSRGPNPIISDILKPDASAPGVDILAAFP 467

Query: 464 PLAPISRDIEDERHVKYNIISGTSMACPHAA-------------------------AWPM 498
           P+   + D  D+RHVKY+++SGTSMACPHAA                         AWPM
Sbjct: 468 PVLSPTDDTADKRHVKYSVMSGTSMACPHAAGVAAHVKAAHPDWSASAIKSAIMTTAWPM 527

Query: 499 NSSKNTQAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDNSTC 558
           N ++ ++ EFA+GSGH+NPV A +PGLVYE  K DYI + C +GY  +K+R ISGDNS+C
Sbjct: 528 NVTERSEGEFAFGSGHVNPVTAIHPGLVYETQKSDYIQLFCGLGYTAEKIRQISGDNSSC 587

Query: 559 SKGSEKTSPKDLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQNSKISVNVV 618
           SK +  T P+DLNYPSMAA+V+  ESFTIKF RTVTN+G  NSTYKA+I   S + + VV
Sbjct: 588 SKAARNTLPRDLNYPSMAAKVAVEESFTIKFHRTVTNVGNANSTYKAKIFSRSSLKIKVV 647

Query: 619 PEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFDGSHIVRSPIV 666
           PE LSF+SL EKKSF VT+ G+ L   SI+SA+LVW DGSH VRSPIV
Sbjct: 648 PEALSFKSLKEKKSFAVTIVGRDLTYNSILSASLVWSDGSHSVRSPIV 695

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478595|ref|XP_002280372.2| PREDICTED: cucumisin-like [Vitis vinifera]

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/710 (56%), Positives = 500/710 (70%), Gaps = 59/710 (8%)

Query: 1   VYIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKL 60
           VYIVY+GSLP+GE+ P S H +ILE+V+EGSS+ + LVRSYKRSFNGFAAKLT+ E +KL
Sbjct: 15  VYIVYLGSLPQGEFSPLSQHLNILEDVLEGSSSRDSLVRSYKRSFNGFAAKLTEKEREKL 74

Query: 61  AGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSD 120
               GVVS+FPS  LQL TTRSWDFMG +E+I ++  VESD+IVGVIDTGIWP+S SFSD
Sbjct: 75  CNKDGVVSIFPSNLLQLQTTRSWDFMGLSETIERKPAVESDVIVGVIDTGIWPESPSFSD 134

Query: 121 EGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNK 180
           EGFGP PKKWKG C GGKNFTCN K+IGA+ Y+  +D + S  D +GHGS+TASTAAGNK
Sbjct: 135 EGFGPPPKKWKGVCSGGKNFTCNKKVIGAQLYNSLNDPDDSVRDRDGHGSHTASTAAGNK 194

Query: 181 VKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIADGVDIITISLGD 232
           +K ASF G+ +G ARGGVPSARI+ Y+           ILAAFDDAI+DGVDII++SLG 
Sbjct: 195 IKGASFYGVAEGSARGGVPSARIAVYKVCFQSGCADADILAAFDDAISDGVDIISVSLGK 254

Query: 233 TSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVD 292
            SA +L  D +AIG+FHAM KGILT+NSAGN GP      S+APW++SVAASTTDR  + 
Sbjct: 255 RSAPNLNEDSLAIGSFHAMAKGILTLNSAGNGGPNTYSVGSVAPWMVSVAASTTDRQIIT 314

Query: 293 KVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSS------CTEDY--ANLVKGNI 344
           KVVLGNG T+    SIN F   G  FPL+YGK  T +        C+ D    +LV+G I
Sbjct: 315 KVVLGNGTTL-AGSSINTFVLNGTEFPLVYGKDATRTCDEYEAQLCSGDCLERSLVEGKI 373

Query: 345 VLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNF 404
           +LC   +G   A EAGA G I ++   ++V  I+PFP ST+  ++F  +I  +Y      
Sbjct: 374 ILCRSITGDRDAHEAGAVGSISQE---FDVPSIVPFPISTLNEEEFR-MIETYYISTK-- 427

Query: 405 LRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSP 464
                  NP+A ILK+   KDS AP+VASFSSRGPN  +P+ILKPDI+APGV+ILAAYSP
Sbjct: 428 -------NPKANILKSESTKDSSAPVVASFSSRGPNTIIPEILKPDITAPGVDILAAYSP 480

Query: 465 LAPISRDIEDERHVKYNIISGTSMACPHAA-------------------------AWPMN 499
           +AP++ + ED+R VKY I+SGTSM+CPH A                         AWPMN
Sbjct: 481 VAPVTDEAEDKRSVKYTILSGTSMSCPHVAGIAAYIKTFHPDWSPSAIQSALITTAWPMN 540

Query: 500 SSKNTQAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDNSTCS 559
            +     E A+GSGH++PVKA +PGLVYEA K DYINM+CSMGYD   +R +SGDNS+C 
Sbjct: 541 GTTYDDGELAFGSGHVDPVKAVSPGLVYEALKADYINMMCSMGYDTKTVRLVSGDNSSCP 600

Query: 560 KGSEKTSPKDLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQ-NSKISVNVV 618
           K + K SPKDLNYPSMA +V   +SF ++FPRTVTN G  NSTYKA ++  NS I V V 
Sbjct: 601 KDT-KGSPKDLNYPSMAVKVEETKSFKVEFPRTVTNFGSANSTYKATVINTNSHIKVQVN 659

Query: 619 PEVLSFRSLNEKKSFIVTVTGKGLAS--GSIVSAALVWFDGSHIVRSPIV 666
           P++LSF+   EKKSF+VTV G+GL S    I +A+LVW DG+H VRSPIV
Sbjct: 660 PDILSFKLEKEKKSFVVTVVGQGLDSIEAPIAAASLVWSDGTHSVRSPIV 709

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745991|emb|CBI16047.3| unnamed protein product [Vitis vinifera]

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/710 (56%), Positives = 500/710 (70%), Gaps = 59/710 (8%)

Query: 1   VYIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKL 60
           VYIVY+GSLP+GE+ P S H +ILE+V+EGSS+ + LVRSYKRSFNGFAAKLT+ E +KL
Sbjct: 3   VYIVYLGSLPQGEFSPLSQHLNILEDVLEGSSSRDSLVRSYKRSFNGFAAKLTEKEREKL 62

Query: 61  AGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSD 120
               GVVS+FPS  LQL TTRSWDFMG +E+I ++  VESD+IVGVIDTGIWP+S SFSD
Sbjct: 63  CNKDGVVSIFPSNLLQLQTTRSWDFMGLSETIERKPAVESDVIVGVIDTGIWPESPSFSD 122

Query: 121 EGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNK 180
           EGFGP PKKWKG C GGKNFTCN K+IGA+ Y+  +D + S  D +GHGS+TASTAAGNK
Sbjct: 123 EGFGPPPKKWKGVCSGGKNFTCNKKVIGAQLYNSLNDPDDSVRDRDGHGSHTASTAAGNK 182

Query: 181 VKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIADGVDIITISLGD 232
           +K ASF G+ +G ARGGVPSARI+ Y+           ILAAFDDAI+DGVDII++SLG 
Sbjct: 183 IKGASFYGVAEGSARGGVPSARIAVYKVCFQSGCADADILAAFDDAISDGVDIISVSLGK 242

Query: 233 TSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVD 292
            SA +L  D +AIG+FHAM KGILT+NSAGN GP      S+APW++SVAASTTDR  + 
Sbjct: 243 RSAPNLNEDSLAIGSFHAMAKGILTLNSAGNGGPNTYSVGSVAPWMVSVAASTTDRQIIT 302

Query: 293 KVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSS------CTEDY--ANLVKGNI 344
           KVVLGNG T+    SIN F   G  FPL+YGK  T +        C+ D    +LV+G I
Sbjct: 303 KVVLGNGTTL-AGSSINTFVLNGTEFPLVYGKDATRTCDEYEAQLCSGDCLERSLVEGKI 361

Query: 345 VLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNF 404
           +LC   +G   A EAGA G I ++   ++V  I+PFP ST+  ++F  +I  +Y      
Sbjct: 362 ILCRSITGDRDAHEAGAVGSISQE---FDVPSIVPFPISTLNEEEFR-MIETYYISTK-- 415

Query: 405 LRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSP 464
                  NP+A ILK+   KDS AP+VASFSSRGPN  +P+ILKPDI+APGV+ILAAYSP
Sbjct: 416 -------NPKANILKSESTKDSSAPVVASFSSRGPNTIIPEILKPDITAPGVDILAAYSP 468

Query: 465 LAPISRDIEDERHVKYNIISGTSMACPHAA-------------------------AWPMN 499
           +AP++ + ED+R VKY I+SGTSM+CPH A                         AWPMN
Sbjct: 469 VAPVTDEAEDKRSVKYTILSGTSMSCPHVAGIAAYIKTFHPDWSPSAIQSALITTAWPMN 528

Query: 500 SSKNTQAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDNSTCS 559
            +     E A+GSGH++PVKA +PGLVYEA K DYINM+CSMGYD   +R +SGDNS+C 
Sbjct: 529 GTTYDDGELAFGSGHVDPVKAVSPGLVYEALKADYINMMCSMGYDTKTVRLVSGDNSSCP 588

Query: 560 KGSEKTSPKDLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQ-NSKISVNVV 618
           K + K SPKDLNYPSMA +V   +SF ++FPRTVTN G  NSTYKA ++  NS I V V 
Sbjct: 589 KDT-KGSPKDLNYPSMAVKVEETKSFKVEFPRTVTNFGSANSTYKATVINTNSHIKVQVN 647

Query: 619 PEVLSFRSLNEKKSFIVTVTGKGLAS--GSIVSAALVWFDGSHIVRSPIV 666
           P++LSF+   EKKSF+VTV G+GL S    I +A+LVW DG+H VRSPIV
Sbjct: 648 PDILSFKLEKEKKSFVVTVVGQGLDSIEAPIAAASLVWSDGTHSVRSPIV 697

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558936|ref|XP_002520491.1| peptidase, putative [Ricinus communis] gi|223540333|gb|EEF41904.1| peptidase, putative [Ricinus communis]

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/705 (55%), Positives = 492/705 (69%), Gaps = 58/705 (8%)

Query: 1   VYIVYMGSLPEGEYLPSSHHQSILEEVVEGSSA-ENILVRSYKRSFNGFAAKLTDHEIQK 59
           ++IVYMGSLP+ EY P SHH S+L+EV E SS+ EN+LV SY+RSFNGFAAKL+D E QK
Sbjct: 6   LHIVYMGSLPKVEYSPLSHHLSLLQEVTESSSSIENLLVTSYRRSFNGFAAKLSDFEAQK 65

Query: 60  LAGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFS 119
           LA MK VVSVFPSR L L TTRSW FMG +E   +    ES++IVGV+DTGIWP+SESFS
Sbjct: 66  LASMKEVVSVFPSRILDLQTTRSWSFMGLDEGARRNPIAESNVIVGVMDTGIWPESESFS 125

Query: 120 DEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGN 179
           D+GF P PK WKG+C+GG NFTCNNKIIGARYY+       SA D+ GHG++TASTAAGN
Sbjct: 126 DKGFSPPPKNWKGSCNGGLNFTCNNKIIGARYYNSTQLRIISARDDVGHGTHTASTAAGN 185

Query: 180 KVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIADGVDIITISLG 231
           KV DASF GI +G ARGGVPSARISAYR        G ++LAAFDDAIADGVDIITIS+G
Sbjct: 186 KVMDASFFGIARGTARGGVPSARISAYRVCSVEGCSGAEVLAAFDDAIADGVDIITISVG 245

Query: 232 DTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFV 291
            + A++   D IAIGAFHAM KGI    SAGNNG + G  SS+APW+++VAAS+ DR  +
Sbjct: 246 PSYALNYYEDPIAIGAFHAMEKGIFVSQSAGNNGVQIGSVSSVAPWILTVAASSKDRRII 305

Query: 292 DKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDY----------ANLVK 341
           DKVVLGNGKT+    SIN+F  KG+ FPL+YG G   S++CT ++          A+LVK
Sbjct: 306 DKVVLGNGKTL-TGTSINSFALKGENFPLIYGIGA--SATCTPEFARVCQLGCLDASLVK 362

Query: 342 GNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVI 401
           G IVLCD+  G+      GA G IL  N + +V+ +   P  ++  D   +        +
Sbjct: 363 GKIVLCDDSRGHFEIERVGAVGSILASNGIEDVAFVASSPFLSLNDDNIAA--------V 414

Query: 402 MNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAA 461
            +++ S+    P A ILK+  I DS AP+VASFSSRGPN    D+LKPDISAPG+ ILAA
Sbjct: 415 KSYINSTS--QPVANILKSEAINDSSAPVVASFSSRGPNLIALDLLKPDISAPGIEILAA 472

Query: 462 YSPLAPISRDIEDERHVKYNIISGTSMACPHAA-------------------------AW 496
           +    P +  + D R VK+NI+SGTSM+CPHAA                         A 
Sbjct: 473 FPTNIPPTESLHDNRQVKFNIVSGTSMSCPHAAGVAAYVKSFHPEWSPSAIKSAIMTTAS 532

Query: 497 PMNSSKNTQAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSM-GYDVDKLRTISGDN 555
           PMN++ ++ AE AYGSGH+NP KA +PGLVYEA  +DYI  LCS+ GY  D +R ISG+N
Sbjct: 533 PMNATTSSDAELAYGSGHLNPSKAIDPGLVYEASNEDYIKFLCSVSGYTEDMVRRISGEN 592

Query: 556 STCSKGSEKTSPKDLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQNSKISV 615
           +TC +G+ K  P+DLNYPSM A +++ ESFTI F RTVTN+GLPNSTYKA++   SK+ +
Sbjct: 593 TTCPEGANKALPRDLNYPSMTAAIAANESFTISFYRTVTNVGLPNSTYKAKVFTGSKLKI 652

Query: 616 NVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFDGSHI 660
            VVPEVLSF+++NEKKSF V+V G+ L S  + SA+LVW DGSHI
Sbjct: 653 KVVPEVLSFKAINEKKSFNVSVDGRYLVSKEMTSASLVWSDGSHI 697

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106385|ref|XP_002314148.1| predicted protein [Populus trichocarpa] gi|222850556|gb|EEE88103.1| predicted protein [Populus trichocarpa]

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/730 (53%), Positives = 495/730 (67%), Gaps = 90/730 (12%)

Query: 1   VYIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKL 60
           VYIVYMGSLP GEY P+SHH S+LEE+VEG SA+  LVRSY RSFN FAA+L+  E++++
Sbjct: 34  VYIVYMGSLPTGEYSPTSHHLSLLEEIVEGRSADGALVRSYNRSFNAFAARLSHAEVERI 93

Query: 61  AGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSD 120
           +G+K VVSVFPSR  QL TTRSWDFMGF E++ +  TVES++I+GVID+GIWP+SESF+D
Sbjct: 94  SGLKEVVSVFPSRRSQLLTTRSWDFMGFPENVKRNPTVESNIIIGVIDSGIWPESESFAD 153

Query: 121 EGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNK 180
           +GFGP P KWKG C GGKNFTCNNKIIGAR   F      +A D EGHGS+TASTAAGN 
Sbjct: 154 KGFGPPPAKWKGTCAGGKNFTCNNKIIGAR-VEFTSGAEATARDTEGHGSHTASTAAGNT 212

Query: 181 VKDASFLGIGQGMARGGVPSARISAYRG-------EKILAAFDDAIADGVDIITISLGDT 233
           V  A+F G+ QG ARG VPSARI+ Y          KILAAFDDAIADGVDIITIS+   
Sbjct: 213 VSGANFYGLAQGNARGAVPSARIAVYMACEEFCDDHKILAAFDDAIADGVDIITISIAKD 272

Query: 234 SAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDK 293
                 +D IAIGAFHAM KGILTV +AGN+GP     SS APW++SVAAS+TDR  +DK
Sbjct: 273 VPFPYENDTIAIGAFHAMEKGILTVQAAGNSGPDPFTVSSHAPWIISVAASSTDRRIIDK 332

Query: 294 VVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYA----------NLVKGN 343
            VLGNG+T  V  S+N+F   G   PL+YGK VT  S+CTED A          +LVKG 
Sbjct: 333 TVLGNGQTF-VGSSVNSFALNGTKIPLIYGKAVT--SNCTEDDAWSCWNNCMNSSLVKGK 389

Query: 344 IVLCD--EFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVI 401
           IV+CD  + S    A  A A G I+ ++   +VS ++P PAS++ P   +        ++
Sbjct: 390 IVICDMTDASVTDEAFRARALGSIMLNDTFEDVSNVVPLPASSLNPHDSD--------LV 441

Query: 402 MNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAA 461
           M++L+S+   NPQA ILK+ + + + AP+VASFSSRGPN  VP+ILKPDISAPGV ILAA
Sbjct: 442 MSYLKST--KNPQATILKSEITEHNTAPVVASFSSRGPNNIVPEILKPDISAPGVEILAA 499

Query: 462 YSPLAPISRDIEDERHVKYNIISGTSMACPHAA--------------------------- 494
           YSP+A  S + +D+R VKYN++SGTSM+CPH A                           
Sbjct: 500 YSPVASPSVNADDKRSVKYNVVSGTSMSCPHVAGAAAYVKSFHPNWSPSAITSALMTTGI 559

Query: 495 ----------------AWPMNSSKNTQAEFAYGSGHINPVKATNPGLVYEAFKQDYINML 538
                           A PMN++K+  AEF YG+GHINP+KA +PGLVYEA + DYI ML
Sbjct: 560 IHFSSYLDPLFTLPCTALPMNTAKHADAEFGYGAGHINPIKAVDPGLVYEATRDDYIRML 619

Query: 539 CSMGYDVDKLRTISGDNSTCSKGSE--KTSPKDLNYPSMAAQVSSGESFTIKFPRTVTNI 596
           CSM            +N+  SK  +  + SPKDLNYPSMA +V    +FT+KFPRTV N+
Sbjct: 620 CSM------------NNTLFSKCPQHIEGSPKDLNYPSMAVRVEENRAFTVKFPRTVRNV 667

Query: 597 GLPNSTYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFD 656
           GL  S+YK+ I   S+I+V V P +LS +S++E++SF+VTV GKGL + S+VS++LVW D
Sbjct: 668 GLAKSSYKSNITTGSQINVMVEPSILSLKSVDERQSFVVTVAGKGLPANSMVSSSLVWND 727

Query: 657 GSHIVRSPIV 666
           G+H VRSPIV
Sbjct: 728 GTHSVRSPIV 737

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083990|emb|CBI24378.3| unnamed protein product [Vitis vinifera]

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/713 (55%), Positives = 496/713 (69%), Gaps = 65/713 (9%)

Query: 1   VYIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKL 60
           VYIVY+GSL EGE+ P S H SIL+ V++GSS+++ LVRSYKRSFNGFAA LTD +I+K+
Sbjct: 38  VYIVYLGSLREGEFSPLSQHLSILDTVLDGSSSKDSLVRSYKRSFNGFAAHLTDKQIEKV 97

Query: 61  AGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSD 120
           A M+GVVS+FP+R LQLHTTRSWDFMGF+E++ +  TVESD I+GVID+GIWP+ +SFSD
Sbjct: 98  ASMEGVVSIFPNRLLQLHTTRSWDFMGFSETVKRNPTVESDTIIGVIDSGIWPELQSFSD 157

Query: 121 EGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNK 180
           EGF   PKKWKG C GGKNFTCN K+IGAR Y+  D  + SA D  GHG++TASTAAGN 
Sbjct: 158 EGFSSIPKKWKGVCQGGKNFTCNKKVIGARAYNSIDKNDDSARDTVGHGTHTASTAAGNI 217

Query: 181 VKDASFLGIGQGMARGGVPSARISAYRG--------EKILAAFDDAIADGVDIITISLGD 232
           V+DASF G+  G ARGGVPSARI+ Y+           ILA FDDAI+DGVDIIT+SLG 
Sbjct: 218 VEDASFFGVASGNARGGVPSARIAVYKVCTADGCTIADILAGFDDAISDGVDIITVSLGS 277

Query: 233 TS-AVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFV 291
            + A  L  D IAIG+FHAM KGILT+NSAGNNGP  G   SIAPW++SVAASTTDR  +
Sbjct: 278 VAGAFFLDKDPIAIGSFHAMVKGILTLNSAGNNGPSPGSVLSIAPWMVSVAASTTDREII 337

Query: 292 DKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGK--GVTNSSSCTEDYANL---------- 339
            KVVLG+GK I+  +SIN+F   G  FPL+ GK  G+TN+S C   Y  L          
Sbjct: 338 TKVVLGDGK-IINGHSINSFVLNGTKFPLVDGKKAGLTNNSDCVT-YPTLDCEIDCLVES 395

Query: 340 -VKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFY 398
              GNI+LC    G  V  + GA G+I  D        I P PAS +          Q +
Sbjct: 396 KTTGNILLC-RGPGLDVPLKFGAVGIIRPDLGRS----IYPLPASDLE--------EQEF 442

Query: 399 QVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNI 458
            ++  ++ S+    P+A+IL++  IK+  AP++ASFS RGP+  + +I+KPDISAPGV+I
Sbjct: 443 AMVEAYINST--KKPEADILRSDSIKNVSAPMLASFSGRGPSSLLAEIIKPDISAPGVDI 500

Query: 459 LAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA------------------------ 494
           LAA+SP+API+  ++D+R  KY+IISGTSM+CPHAA                        
Sbjct: 501 LAAFSPVAPITESLDDKRRAKYSIISGTSMSCPHAAGAAAYVKTFHPDWSPSAIRSALMT 560

Query: 495 -AWPMNSSKNTQAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISG 553
            AWPMN++ N  AEF YGSGHINPVKA NPGLVYEAFK DYI M+C +G+D +K+R ISG
Sbjct: 561 TAWPMNATANPAAEFGYGSGHINPVKAINPGLVYEAFKDDYIKMMCGLGFDAEKVRLISG 620

Query: 554 DN-STCSKGSEKTSPKDLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQNSK 612
           DN +TC+ G  + + +DLNYPSMA+     + F I+FPRTVTN+G  NSTY+A+I  +  
Sbjct: 621 DNTTTCTTGVTQGAVRDLNYPSMASTADQHKPFNIRFPRTVTNVGQANSTYQAKITADPL 680

Query: 613 ISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFDGSHIVRSPI 665
           + V V P VLSF SLNEKK+F+VTV+G+ L     VSA+LVW DG+H VRSPI
Sbjct: 681 MKVQVNPNVLSFTSLNEKKTFVVTVSGEALDKQPNVSASLVWTDGTHSVRSPI 733

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479070|ref|XP_002271624.2| PREDICTED: cucumisin-like [Vitis vinifera]

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/713 (55%), Positives = 496/713 (69%), Gaps = 65/713 (9%)

Query: 1   VYIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKL 60
           VYIVY+GSL EGE+ P S H SIL+ V++GSS+++ LVRSYKRSFNGFAA LTD +I+K+
Sbjct: 41  VYIVYLGSLREGEFSPLSQHLSILDTVLDGSSSKDSLVRSYKRSFNGFAAHLTDKQIEKV 100

Query: 61  AGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSD 120
           A M+GVVS+FP+R LQLHTTRSWDFMGF+E++ +  TVESD I+GVID+GIWP+ +SFSD
Sbjct: 101 ASMEGVVSIFPNRLLQLHTTRSWDFMGFSETVKRNPTVESDTIIGVIDSGIWPELQSFSD 160

Query: 121 EGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNK 180
           EGF   PKKWKG C GGKNFTCN K+IGAR Y+  D  + SA D  GHG++TASTAAGN 
Sbjct: 161 EGFSSIPKKWKGVCQGGKNFTCNKKVIGARAYNSIDKNDDSARDTVGHGTHTASTAAGNI 220

Query: 181 VKDASFLGIGQGMARGGVPSARISAYRG--------EKILAAFDDAIADGVDIITISLGD 232
           V+DASF G+  G ARGGVPSARI+ Y+           ILA FDDAI+DGVDIIT+SLG 
Sbjct: 221 VEDASFFGVASGNARGGVPSARIAVYKVCTADGCTIADILAGFDDAISDGVDIITVSLGS 280

Query: 233 TS-AVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFV 291
            + A  L  D IAIG+FHAM KGILT+NSAGNNGP  G   SIAPW++SVAASTTDR  +
Sbjct: 281 VAGAFFLDKDPIAIGSFHAMVKGILTLNSAGNNGPSPGSVLSIAPWMVSVAASTTDREII 340

Query: 292 DKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGK--GVTNSSSCTEDYANL---------- 339
            KVVLG+GK I+  +SIN+F   G  FPL+ GK  G+TN+S C   Y  L          
Sbjct: 341 TKVVLGDGK-IINGHSINSFVLNGTKFPLVDGKKAGLTNNSDCVT-YPTLDCEIDCLVES 398

Query: 340 -VKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFY 398
              GNI+LC    G  V  + GA G+I  D        I P PAS +          Q +
Sbjct: 399 KTTGNILLC-RGPGLDVPLKFGAVGIIRPDLGRS----IYPLPASDLE--------EQEF 445

Query: 399 QVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNI 458
            ++  ++ S+    P+A+IL++  IK+  AP++ASFS RGP+  + +I+KPDISAPGV+I
Sbjct: 446 AMVEAYINST--KKPEADILRSDSIKNVSAPMLASFSGRGPSSLLAEIIKPDISAPGVDI 503

Query: 459 LAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA------------------------ 494
           LAA+SP+API+  ++D+R  KY+IISGTSM+CPHAA                        
Sbjct: 504 LAAFSPVAPITESLDDKRRAKYSIISGTSMSCPHAAGAAAYVKTFHPDWSPSAIRSALMT 563

Query: 495 -AWPMNSSKNTQAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISG 553
            AWPMN++ N  AEF YGSGHINPVKA NPGLVYEAFK DYI M+C +G+D +K+R ISG
Sbjct: 564 TAWPMNATANPAAEFGYGSGHINPVKAINPGLVYEAFKDDYIKMMCGLGFDAEKVRLISG 623

Query: 554 DN-STCSKGSEKTSPKDLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQNSK 612
           DN +TC+ G  + + +DLNYPSMA+     + F I+FPRTVTN+G  NSTY+A+I  +  
Sbjct: 624 DNTTTCTTGVTQGAVRDLNYPSMASTADQHKPFNIRFPRTVTNVGQANSTYQAKITADPL 683

Query: 613 ISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFDGSHIVRSPI 665
           + V V P VLSF SLNEKK+F+VTV+G+ L     VSA+LVW DG+H VRSPI
Sbjct: 684 MKVQVNPNVLSFTSLNEKKTFVVTVSGEALDKQPNVSASLVWTDGTHSVRSPI 736

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745988|emb|CBI16044.3| unnamed protein product [Vitis vinifera]

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/708 (54%), Positives = 485/708 (68%), Gaps = 57/708 (8%)

Query: 1    VYIVYMGSLPEGE-YLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQK 59
            VY+VY+G LPE + Y P     SIL  V+E SS     VRSY++SFNGFAA+LTD E ++
Sbjct: 770  VYVVYLGHLPENQAYSPMGQQYSILGSVLETSSISQAFVRSYRKSFNGFAARLTDREKER 829

Query: 60   LAGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFS 119
            LA M+ VVS+FPS+TLQ  T+RSWDFMGF ESI +R  VESD+I+GV DTGIWP+SESFS
Sbjct: 830  LANMEDVVSIFPSKTLQPQTSRSWDFMGFTESIRRRPFVESDVIIGVFDTGIWPESESFS 889

Query: 120  DEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGN 179
            D+GFGP P+KW+G C GGKNFTCNNK+IGAR Y+ +   +    D +GHG++TASTAAGN
Sbjct: 890  DKGFGPIPRKWRGVCQGGKNFTCNNKLIGARNYNAKKAPDNYVRDIDGHGTHTASTAAGN 949

Query: 180  KVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIADGVDIITISLG 231
             V  ASF G+ +G ARGGVPSARI+AY+           I+AAFDDAIADGVDIITISLG
Sbjct: 950  PVT-ASFFGVAKGTARGGVPSARIAAYKVCHPSGCEEADIMAAFDDAIADGVDIITISLG 1008

Query: 232  DTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFV 291
               AVD   D IAIGAFHAM KGILTVNSAGNNGPK      +APWL+SVAAS+TDR  +
Sbjct: 1009 LGGAVDFTIDSIAIGAFHAMQKGILTVNSAGNNGPKRATAVGVAPWLLSVAASSTDRRII 1068

Query: 292  DKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTN-----SSSCTEDY--ANLVKGNI 344
             KV+LG+G T +   +IN+F  +G+ FPL+YGK  T+     S+ C      + LVKG I
Sbjct: 1069 SKVILGDG-TRLTGAAINSFQLRGEKFPLVYGKDATSKCDAFSAQCISKCLDSKLVKGKI 1127

Query: 345  VLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNF 404
            V+C  F G   A +AGA G IL ++   +VS I+P PAS + P +FN         ++++
Sbjct: 1128 VVCQAFWGLQEAFKAGAVGAILLNDFQTDVSFIVPLPASALRPKRFNK--------LLSY 1179

Query: 405  LRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSP 464
            + S+   +P+A IL++   KD+ AP+VA FSSRGPN  +P+ILKPDISAPGV+ILAA+SP
Sbjct: 1180 INST--KSPEATILRSVSRKDASAPVVAQFSSRGPNIILPEILKPDISAPGVDILAAFSP 1237

Query: 465  LAPISRDIEDERHVKYNIISGTSMACPHAA-------------------------AWPMN 499
            LA  S    D+R  +YNIISGTSMACPH A                         AW MN
Sbjct: 1238 LASPSEISGDKRAARYNIISGTSMACPHVAGVAAYVKTFHPNWSPSAIQSALMTTAWRMN 1297

Query: 500  SSKNTQAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDNSTCS 559
            +++    E AYGSGH+NPVKA +PGL+Y A KQDY+NMLC MGYD   +R I+G+NS C 
Sbjct: 1298 ATRTPDGELAYGSGHVNPVKAISPGLIYHAHKQDYVNMLCGMGYDSKNMRLITGENSQCP 1357

Query: 560  KGSEKTSPKDLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQNS-KISVNVV 618
            K S   S KDLNYPSMA +V   + F ++FPR V N+G   S YKA +   S ++ V V+
Sbjct: 1358 KNST-FSAKDLNYPSMAVKVPPNKPFKVEFPRRVKNVGPAPSIYKAEVTTTSPRLKVRVI 1416

Query: 619  PEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFDGSHIVRSPIV 666
            P VLSFRSL E+K F+V+V GKGL    + SA+LVW DG H+V+SPIV
Sbjct: 1417 PNVLSFRSLYEEKHFVVSVVGKGLE--LMESASLVWSDGRHLVKSPIV 1462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434782|ref|XP_002280283.1| PREDICTED: cucumisin-like [Vitis vinifera]

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/711 (54%), Positives = 485/711 (68%), Gaps = 62/711 (8%)

Query: 1   VYIVYMGSLPEGE-YLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQK 59
           VY+VY+G LPE + Y P     SIL  V+E SS     VRSY++SFNGFAA+LTD E ++
Sbjct: 34  VYVVYLGHLPENQAYSPMGQQYSILGSVLETSSISQAFVRSYRKSFNGFAARLTDREKER 93

Query: 60  LAGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFS 119
           LA M+ VVS+FPS+TLQ  T+RSWDFMGF ESI +R  VESD+I+GV DTGIWP+SESFS
Sbjct: 94  LANMEDVVSIFPSKTLQPQTSRSWDFMGFTESIRRRPFVESDVIIGVFDTGIWPESESFS 153

Query: 120 DEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGN 179
           D+GFGP P+KW+G C GGKNFTCNNK+IGAR Y+ +   +    D +GHG++TASTAAGN
Sbjct: 154 DKGFGPIPRKWRGVCQGGKNFTCNNKLIGARNYNAKKAPDNYVRDIDGHGTHTASTAAGN 213

Query: 180 KVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIADGVDIITISLG 231
            V  ASF G+ +G ARGGVPSARI+AY+           I+AAFDDAIADGVDIITISLG
Sbjct: 214 PVT-ASFFGVAKGTARGGVPSARIAAYKVCHPSGCEEADIMAAFDDAIADGVDIITISLG 272

Query: 232 DTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFV 291
              AVD   D IAIGAFHAM KGILTVNSAGNNGPK      +APWL+SVAAS+TDR  +
Sbjct: 273 LGGAVDFTIDSIAIGAFHAMQKGILTVNSAGNNGPKRATAVGVAPWLLSVAASSTDRRII 332

Query: 292 DKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNS----------SSCTEDYANLVK 341
            KV+LG+G T +   +IN+F  +G+ FPL+YGK  T+           S C +  + LVK
Sbjct: 333 SKVILGDG-TRLTGAAINSFQLRGEKFPLVYGKDATSKCDAFSAQRCISKCLD--SKLVK 389

Query: 342 GNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVI 401
           G IV+C  F G   A +AGA G IL ++   +VS I+P PAS + P +FN         +
Sbjct: 390 GKIVVCQAFWGLQEAFKAGAVGAILLNDFQTDVSFIVPLPASALRPKRFNK--------L 441

Query: 402 MNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAA 461
           ++++ S+   +P+A IL++   KD+ AP+VA FSSRGPN  +P+ILKPDISAPGV+ILAA
Sbjct: 442 LSYINST--KSPEATILRSVSRKDASAPVVAQFSSRGPNIILPEILKPDISAPGVDILAA 499

Query: 462 YSPLAPISRDIEDERHVKYNIISGTSMACPHAA-------------------------AW 496
           +SPLA  S    D+R  +YNIISGTSMACPH A                         AW
Sbjct: 500 FSPLASPSEISGDKRAARYNIISGTSMACPHVAGVAAYVKTFHPNWSPSAIQSALMTTAW 559

Query: 497 PMNSSKNTQAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDNS 556
            MN+++    E AYGSGH+NPVKA +PGL+Y A KQDY+NMLC MGYD   +R I+G+NS
Sbjct: 560 RMNATRTPDGELAYGSGHVNPVKAISPGLIYHAHKQDYVNMLCGMGYDSKNMRLITGENS 619

Query: 557 TCSKGSEKTSPKDLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQNS-KISV 615
            C K S   S KDLNYPSMA +V   + F ++FPR V N+G   S YKA +   S ++ V
Sbjct: 620 QCPKNST-FSAKDLNYPSMAVKVPPNKPFKVEFPRRVKNVGPAPSIYKAEVTTTSPRLKV 678

Query: 616 NVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFDGSHIVRSPIV 666
            V+P VLSFRSL E+K F+V+V GKGL    + SA+LVW DG H+V+SPIV
Sbjct: 679 RVIPNVLSFRSLYEEKHFVVSVVGKGLE--LMESASLVWSDGRHLVKSPIV 727

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478633|ref|XP_002280951.2| PREDICTED: cucumisin [Vitis vinifera]

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/709 (54%), Positives = 484/709 (68%), Gaps = 56/709 (7%)

Query: 2   YIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLA 61
           YIVYMG+LP+ ++ P S H SILE+ + GSS E+ LVRSY RSFNGFAAKLT+ E +KLA
Sbjct: 34  YIVYMGALPQQQFSPLSQHLSILEDALGGSSPEDSLVRSYGRSFNGFAAKLTEQEREKLA 93

Query: 62  GMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDE 121
             + VVSVFPS  LQLHTTRSWDFMGF +++ +  ++ESD+I+GV+DTGIWP+S+SFSDE
Sbjct: 94  SKEEVVSVFPSGILQLHTTRSWDFMGFPQTVKRVPSIESDIIIGVLDTGIWPESKSFSDE 153

Query: 122 GFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKV 181
           G GP PKKWKG+C GG+NFTCN KIIGAR Y+     + +A D EGHG++TASTAAG+ V
Sbjct: 154 GLGPVPKKWKGSCKGGQNFTCNKKIIGARVYNSMISPDNTARDSEGHGTHTASTAAGSVV 213

Query: 182 KDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIADGVDIITISLGDT 233
           K ASF G+G+G ARGGVPSARI+ Y+           ++AAFDDAI+DGVDIIT+SLG  
Sbjct: 214 KGASFYGVGKGDARGGVPSARIAVYKVCYETGCTVADVMAAFDDAISDGVDIITVSLGAA 273

Query: 234 SAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDK 293
           +A+ L  D I IGAFHAM KGILT+NSAGNNGP     SS+APW++SVAASTTDR  + +
Sbjct: 274 AALPLDSDSIGIGAFHAMAKGILTLNSAGNNGPVPVSVSSVAPWMVSVAASTTDRRIIGE 333

Query: 294 VVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVT-----NSSSCTEDYAN--LVKGNIVL 346
           VVLGNG T V   +IN+F   G   P++YGK  +     N+  C     N  L KG IVL
Sbjct: 334 VVLGNGVT-VEGIAINSFELNGTNHPIVYGKTASTCDKQNAEICRPSCLNEDLSKGKIVL 392

Query: 347 CDEFSGYHV-AREAGAAGLI-LKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNF 404
           C      +V A   GA G I L       V  I+P P +T+T   F  +     +  +N 
Sbjct: 393 CKNNPQIYVEASRVGALGTITLAQEYQEKVPFIVPVPMTTLTRPDFEKV-----EAYINS 447

Query: 405 LRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSP 464
            +      P+A ILK+  + D+ AP+VA FSSRGPN+ VPD LKPDI+APGV+ILAA+SP
Sbjct: 448 TK-----KPKANILKSESLNDTSAPVVAFFSSRGPNRIVPDFLKPDITAPGVDILAAFSP 502

Query: 465 LAPISRDIEDERHVKYNIISGTSMACPHAAA-----------WP--------------MN 499
           +APIS   ED+R V YN +SGTSM+CPHAAA           W               ++
Sbjct: 503 IAPISDTDEDDRRVNYNFLSGTSMSCPHAAAVAAYVKSFHPTWSPSAIKSAIMTTAQRLD 562

Query: 500 SSKNTQAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDNSTCS 559
            S N   E AYGSGHI+PVKA +PGLVY+A K+DYI M+C+MGYD +++R ISGDNST  
Sbjct: 563 PSNNPDGELAYGSGHIDPVKARSPGLVYDASKEDYIKMMCTMGYDTNQVRLISGDNSTSC 622

Query: 560 KGSEKTSPKDLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARI-LQNSKISVNVV 618
               K SP+DLNYPSMAA+V   + F +KFPRTVTN+G  NSTYKA+I +++  I V V 
Sbjct: 623 PKDGKGSPRDLNYPSMAAKVDPKKPFAVKFPRTVTNVGFANSTYKAKIRIRSRHIKVQVN 682

Query: 619 PEVLSFRSLNEKKSFIVTVTGKGL--ASGSIVSAALVWFDGSHIVRSPI 665
           P  LSF+SLNE KSF+VTVTG GL        SA+L W DG+H VRSPI
Sbjct: 683 PSTLSFKSLNETKSFLVTVTGDGLNFEKDPTASASLAWSDGNHHVRSPI 731

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	667
TAIR|locus:2168524	693	AT5G59190 "AT5G59190" [Arabido	0.710	0.683	0.546	6.7e-186
TAIR|locus:2154528	713	AT5G58840 "AT5G58840" [Arabido	0.968	0.906	0.484	8.4e-145
TAIR|locus:2154503	703	AT5G58820 "AT5G58820" [Arabido	0.949	0.900	0.471	4.2e-143
TAIR|locus:2168434	732	SBT4.13 "AT5G59120" [Arabidops	0.856	0.780	0.485	2.4e-138
TAIR|locus:2154513	701	AT5G58830 "AT5G58830" [Arabido	0.940	0.894	0.467	2.2e-137
TAIR|locus:2153291	736	SBT4.12 "AT5G59090" [Arabidops	0.710	0.644	0.553	1.6e-134
TAIR|locus:2153296	741	AT5G59100 "AT5G59100" [Arabido	0.721	0.649	0.541	1.1e-133
TAIR|locus:2102807	736	AT3G46850 "AT3G46850" [Arabido	0.719	0.652	0.536	9.1e-132
TAIR|locus:2102792	738	AT3G46840 "AT3G46840" [Arabido	0.716	0.647	0.549	3.9e-131
TAIR|locus:2168444	732	AT5G59130 "AT5G59130" [Arabido	0.701	0.639	0.543	2.3e-126

TAIR|locus:2168524 AT5G59190 "AT5G59190" [Arabidopsis thaliana (taxid:3702)]

 Score = 1327 (472.2 bits), Expect = 6.7e-186, Sum P(2) = 6.7e-186
 Identities = 277/507 (54%), Positives = 361/507 (71%)

Query:     6 MGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKG 65
             MG+LPE +Y P SHH SIL+++V   +A ++LVRSYKRSFNGFAA L+  E QKL  MK 
Sbjct:     1 MGTLPEIKYSPPSHHLSILQKLVGTIAASHLLVRSYKRSFNGFAANLSQAESQKLQNMKE 60

Query:    66 VVSVFPSRTLQLHTTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGP 125
             VVSVFPS++ +L TTRSWDF+GF E   +    ESD+IVGVID+GIWP+SESF DEGFGP
Sbjct:    61 VVSVFPSKSHELTTTRSWDFVGFGEKARRESVKESDVIVGVIDSGIWPESESFDDEGFGP 120

Query:   126 APKKWKGACDGGKNFTCNNKIIGARYYS-FRDDGNGSAIDEEGHGSNTASTAAGNKVKDA 184
              PKKWKG+C GG  F CNNK+IGAR+Y+ F D    SA DEEGHG++TASTAAGN V+ A
Sbjct:   121 PPKKWKGSCKGGLKFACNNKLIGARFYNKFAD----SARDEEGHGTHTASTAAGNAVQAA 176

Query:   185 SFLGIGQGMARGGVPSARISAYR-------GEKILAAFDDAIADGVDIITISLGDTSAVD 237
             SF G+ QG ARGGVPSARI+AY+          ILAAFDDAIADGVD+I+IS+      +
Sbjct:   177 SFYGLAQGTARGGVPSARIAAYKVCFNRCNDVDILAAFDDAIADGVDVISISISADYVSN 236

Query:   238 LAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKVVLG 297
             L +  +AIG+FHAM +GI+T  SAGNNGP  G  ++++PW+++VAAS TDR F+D+VVLG
Sbjct:   237 LLNASVAIGSFHAMMRGIITAGSAGNNGPDQGSVANVSPWMITVAASGTDRQFIDRVVLG 296

Query:   298 NGKTIVVRYSINAFTHKGKMFPLLYGKGVT-NSSSCTEDYAN-------LVKGNIVLCDE 349
             NGK +    S+N F   G  FP++YG+ V+ N S     Y +       LVKG IVLCD+
Sbjct:   297 NGKALT-GISVNTFNLNGTKFPIVYGQNVSRNCSQAQAGYCSSGCVDSELVKGKIVLCDD 355

Query:   350 FSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSI 409
             F GY  A  AGA G+I+++  L + + ++PFPAS        S+  + Y+ I +++ S+ 
Sbjct:   356 FLGYREAYLAGAIGVIVQNTLLPDSAFVVPFPAS--------SLGFEDYKSIKSYIESAE 407

Query:   410 ILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPIS 469
                PQAEIL+T  I D +AP V SFSSRGP+  + ++LKPD+SAPG+ ILAA+SP+A  S
Sbjct:   408 --PPQAEILRTEEIVDREAPYVPSFSSRGPSFVIQNLLKPDVSAPGLEILAAFSPVASPS 465

Query:   470 RDI--EDERHVKYNIISGTSMACPHAA 494
               +  ED+R V+Y+++SGTSMACPH A
Sbjct:   466 SFLNPEDKRSVRYSVMSGTSMACPHVA 492

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

TAIR|locus:2154528 AT5G58840 "AT5G58840" [Arabidopsis thaliana (taxid:3702)]

 Score = 1415 (503.2 bits), Expect = 8.4e-145, P = 8.4e-145
 Identities = 335/692 (48%), Positives = 428/692 (61%)

Query:     1 VYIVYMGSLPEG--EYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQ 58
             VY+VYMGSLP    EY P SHH SIL+EV   SS E  LVRSYKRSFNGFAA+LT+ E +
Sbjct:    34 VYVVYMGSLPSSRLEYTPMSHHMSILQEVTGESSVEGRLVRSYKRSFNGFAARLTESERE 93

Query:    59 KLAGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRT--VESDLIVGVIDTGIWPQSE 116
             ++A M+GVVSVFP    +L TT SWDF+G  E    +R   +ESD I+G ID+GIWP+SE
Sbjct:    94 RVAEMEGVVSVFPDINYKLQTTASWDFLGLKEGKNTKRNLAIESDTIIGFIDSGIWPESE 153

Query:   117 SFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTA 176
             SFSD+GFGP PKKWKG C  GKNFTCNNK+IGAR Y+     N    D EGHG++TASTA
Sbjct:   154 SFSDKGFGPPPKKWKGVCSAGKNFTCNNKLIGARDYT-----NEGTRDIEGHGTHTASTA 208

Query:   177 AGNKVKDASFLGIGQGMARGGVPSARISAYRG--------EKILAAFDDAIADGVDIITI 228
             AGN VK+ SF GIG G ARGGVP++RI+AY+         E +L+AFDDAIADGVD+I+I
Sbjct:   209 AGNAVKNTSFYGIGNGTARGGVPASRIAAYKACSEMGCTTESVLSAFDDAIADGVDLISI 268

Query:   229 SLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDR 288
             SLG         D IAIGAFHAM KGILTV SAGN GP  G   S+APW+++VAAS T+R
Sbjct:   269 SLGANLVRTYETDPIAIGAFHAMVKGILTVQSAGNGGPNPGSVMSVAPWILTVAASNTNR 328

Query:   289 LFVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYA---NLVKGNIV 345
              FV KVVLGNGKT V + S+NAF  KGK +PL YG G T+            + V   IV
Sbjct:   329 GFVTKVVLGNGKTFVGK-SLNAFDLKGKNYPL-YG-GSTDGPLLRGKILVSEDKVSSEIV 385

Query:   346 LCDEFSGYHVAREAGA--AGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMN 403
             + +    YH         +  + KD+    +S +    +   T  K  +I +Q    +  
Sbjct:   386 VANINENYHDYAYVSILPSSALSKDDFDSVISYVNSTKSPHGTVLKSEAIFNQAAPKVAG 445

Query:   404 FLRSSIILNPQA-EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAY 462
             F  SS   N  A +ILK  V       I+A+FS    N    D  K D      ++L+  
Sbjct:   446 F--SSRGPNTIAVDILKPDVTAPG-VEILAAFSPL--NSPAQD--KRDNRHVKYSVLSGT 498

Query:   463 SPLAPISRDIEDERHVK-YNIISGTSM--ACPHAAAWPMNSSKNTQA--EFAYGSGHINP 517
             S   P    +    ++K ++     SM  +     AWPMN++    A  EFAYG+GH++P
Sbjct:   499 SMSCPHVAGVA--AYIKTFHPEWSPSMIQSAIMTTAWPMNATGTAVASTEFAYGAGHVDP 556

Query:   518 VKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDNSTCSKGSEKTSPKDLNYPSMAA 577
             + A NPGLVYE  K D+I  LC + Y+   L+ I+G+  TC+ G  KT P++LNYPSM+A
Sbjct:   557 IAAINPGLVYEIGKSDHIAFLCGLNYNATSLKLIAGEAVTCT-G--KTLPRNLNYPSMSA 613

Query:   578 QVSSGES-FTIKFPRTVTNIGLPNSTYKARILQN--SKISVNVVPEVLSFRSLNEKKSFI 634
             ++   ES F + F RTVTN+G PNSTYK++I+ N  S + V V P VLS +S+ EK+SF 
Sbjct:   614 KLPKSESSFIVTFNRTVTNVGTPNSTYKSKIVLNHGSNLKVEVSPSVLSMKSVKEKQSFT 673

Query:   635 VTVTGKGLASGSIVSAALVWFDGSHIVRSPIV 666
             VTV+G  +      SA L+W DG+H VRSPIV
Sbjct:   674 VTVSGSNIDPKLPSSANLIWSDGTHNVRSPIV 705

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

TAIR|locus:2154503 AT5G58820 "AT5G58820" [Arabidopsis thaliana (taxid:3702)]

 Score = 1399 (497.5 bits), Expect = 4.2e-143, P = 4.2e-143
 Identities = 332/704 (47%), Positives = 438/704 (62%)

Query:     1 VYIVYMGSLPEG-EYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQK 59
             VY+VYMGSLP   EY P SHH SIL+EV   SS E  LVRSYKRSFNGFAA+LT+ E  +
Sbjct:    29 VYVVYMGSLPSLLEYTPLSHHMSILQEVTGDSSVEGRLVRSYKRSFNGFAARLTESERIR 88

Query:    60 LAGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRT--VESDLIVGVIDTGIWPQSES 117
             +A M+GVVSVFP+   +L TT SWDF+G  E    +R   +ESD I+G ID+GIWP+SES
Sbjct:    89 VAEMEGVVSVFPNINYKLQTTASWDFLGLKEGKNTKRNLAIESDTIIGFIDSGIWPESES 148

Query:   118 FSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAA 177
             FSD+GFGP PKKWKG C GGKNFTCNNK+IGAR Y+      G+  D +GHG++TASTAA
Sbjct:   149 FSDKGFGPPPKKWKGVCSGGKNFTCNNKLIGARDYT----SEGTR-DLQGHGTHTASTAA 203

Query:   178 GNKVKDASFLGIGQGMARGGVPSARISAYR--GEK------ILAAFDDAIADGVDIITIS 229
             GN V DASF GIG G ARGGVP++RI+AY+   EK      +L+AFDDAIADGVD+I+IS
Sbjct:   204 GNAVADASFFGIGNGTARGGVPASRIAAYKVCSEKDCTAASLLSAFDDAIADGVDLISIS 263

Query:   230 LGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRL 289
             L          D IAIGAFHA  KGILTVNSAGN+G     T+S+APW++SVAAS T+R 
Sbjct:   264 LASEFPQKYYKDAIAIGAFHANVKGILTVNSAGNSGSFPSTTASVAPWILSVAASNTNRG 323

Query:   290 FVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDE 349
             F  KVVLGNGKT+V R S+N+F  KGK +PL+YG     S         LV+G I++   
Sbjct:   324 FFTKVVLGNGKTLVGR-SVNSFDLKGKKYPLVYGDNFNES---------LVQGKILV--- 370

Query:   350 FSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIM---NFLR 406
              S +  + +     +++ D + Y  +L+   P S + PD F+S++            FL+
Sbjct:   371 -SKFPTSSKVAVGSILIDDYQHY--ALLSSKPFSLLPPDDFDSLVSYINSTRSPQGTFLK 427

Query:   407 SSIILNPQA-----------EILKTSVIK-DSDAP---IVASFSSRG-PNKYVPDILKPD 450
             +    N  A             +   ++K D  AP   I+A++S  G P++   D  +  
Sbjct:   428 TEAFFNQTAPTVASFSSRGPNFIAVDLLKPDISAPGVEILAAYSPLGSPSEEESDKRRVK 487

Query:   451 ISA-PGVNILAAYSPLAPISRDIEDERHVKYN--IISGTSMACPHAAAWPMNSSKN--TQ 505
              S   G ++   +  +A ++  I    H K++  +I    M      AWPM  ++     
Sbjct:   488 YSVMSGTSMSCPH--VAGVAAYIRTF-HPKWSPSVIQSAIMT----TAWPMKPNRPGFAS 540

Query:   506 AEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDNSTCSKGSEKT 565
              EFAYG+GH++ + A NPGLVYE  K D+I  LC + Y    L  I+G+  TCS G+  T
Sbjct:   541 TEFAYGAGHVDQIAAINPGLVYELDKADHIAFLCGLNYTSKTLHLIAGEAVTCS-GN--T 597

Query:   566 SPKDLNYPSMAAQVSS-GESFTIKFPRTVTNIGLPNSTYKARILQN--SKISVNVVPEVL 622
              P++LNYPSM+A++     SFT+ F RTVTN+G PNSTYK++I+ N  +K+ V V P VL
Sbjct:   598 LPRNLNYPSMSAKIDGYNSSFTVTFKRTVTNLGTPNSTYKSKIVLNHGAKL-VKVSPSVL 656

Query:   623 SFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFDGSHIVRSPIV 666
             SF+ +NEK+SF VT +G  L      SA L+W DG+H VRS IV
Sbjct:   657 SFKRVNEKQSFTVTFSGN-LNLNLPTSANLIWSDGTHNVRSVIV 699

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

TAIR|locus:2168434 SBT4.13 "AT5G59120" [Arabidopsis thaliana (taxid:3702)]

 Score = 1354 (481.7 bits), Expect = 2.4e-138, P = 2.4e-138
 Identities = 310/638 (48%), Positives = 408/638 (63%)

Query:     1 VYIVYMGSLPE-GEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQK 59
             VYIVYMGSL    +Y P+S H +IL+EV   SS E  LVRSYKRSFNGFAA+LT+ E ++
Sbjct:    31 VYIVYMGSLSSRADYTPTSDHMNILQEVTGESSIEGRLVRSYKRSFNGFAARLTESERER 90

Query:    60 LAGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRR--TVESDLIVGVIDTGIWPQSES 117
             +A M GVVSVFP++ LQL TT SWDFMG  E I  +R  TVESD I+GVID+GI P+S+S
Sbjct:    91 VAKMVGVVSVFPNKKLQLQTTTSWDFMGLKEGIKTKRNPTVESDTIIGVIDSGITPESQS 150

Query:   118 FSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAA 177
             FSD+GFGP P+KWKG C GGKNFTCNNK+IGAR Y+      G+  D +GHG++TASTAA
Sbjct:   151 FSDKGFGPPPQKWKGVCSGGKNFTCNNKLIGARDYT----SEGTR-DMDGHGTHTASTAA 205

Query:   178 GNKVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIADGVDIITIS 229
             GN V DASF GIG G  RGGVP++R++AY+         E +L+AFDDAIADGVD+ITIS
Sbjct:   206 GNAVVDASFFGIGNGTVRGGVPASRVAAYKVCTPTGCSSEALLSAFDDAIADGVDLITIS 265

Query:   230 LGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRL 289
             +GD +A    +D IAIGAFHAM KG+LTVNSAGN+GPK    S +APW+++VAASTT+R 
Sbjct:   266 IGDKTASMFQNDPIAIGAFHAMAKGVLTVNSAGNSGPKPISVSGVAPWILTVAASTTNRG 325

Query:   290 FVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYANL---------- 339
             FV KVVLGNGKT+V + S+NA+  KGK +PL+YGK    SS+C  + A L          
Sbjct:   326 FVTKVVLGNGKTLVGK-SVNAYEMKGKDYPLVYGKSAA-SSACDAESAGLCELSCVDKSR 383

Query:   340 VKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQ 399
             VKG I++C    G  +    GA GLI +  +  +V+ I P PA+ +  + F S++     
Sbjct:   384 VKGKILVCGGPGGLKIVESVGAVGLIYRTPKP-DVAFIHPLPAAGLLTEDFESLV----- 437

Query:   400 VIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNIL 459
                ++L S+   +PQA +LKT  I +  +P++ASFSSRGPN    DILKPDI+APGV IL
Sbjct:   438 ---SYLESTD--SPQAIVLKTEAIFNRTSPVIASFSSRGPNTIAVDILKPDITAPGVEIL 492

Query:   460 AAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA---AWPMNSSKNTQAEFAYGSGHIN 516
             AAYSP    S+D  D RHVKY+++SGTSM+CPH A   A+    +          +    
Sbjct:   493 AAYSPAGEPSQD--DTRHVKYSVLSGTSMSCPHVAGVAAYVKTFNPKWSPSMIQSAIMTT 550

Query:   517 --PVKATNPGLVYE--AFKQDYINMLCSMG----YDVDKLRTISGDNSTCSKGSEKTSPK 568
               PV AT  G+     A+   +++ + +      Y++DK   I+     C          
Sbjct:   551 AWPVNATGTGIASTEFAYGSGHVDPIAASNPGLVYELDKSDHIA---FLCG--------- 598

Query:   569 DLNYPSMAAQVSSGESFTIKFPRTVT--NIGLPNSTYK 604
              +NY S   +V SGE+ T    + +   N+  P+ + K
Sbjct:   599 -MNYTSQVLKVISGETVTCSEAKKILPRNLNYPSMSAK 635

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2154513 AT5G58830 "AT5G58830" [Arabidopsis thaliana (taxid:3702)]

 Score = 1345 (478.5 bits), Expect = 2.2e-137, P = 2.2e-137
 Identities = 328/702 (46%), Positives = 424/702 (60%)

Query:     1 VYIVYMGSLP-EGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQK 59
             VY+VYMGSLP +  Y P S+H +IL+EV  G S        YKRSFNGF+A LT+ E + 
Sbjct:    33 VYVVYMGSLPSQPNYTPMSNHINILQEVT-GES--------YKRSFNGFSALLTESEREG 83

Query:    60 LAGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRT--VESDLIVGVIDTGIWPQSES 117
             +A M+GVVSVF S+  +L TT SWDFMG  E    +R   VESD I+G ID+GIWP+SES
Sbjct:    84 VAEMEGVVSVFRSKNYKLQTTASWDFMGMKEGKNTKRNFAVESDTIIGFIDSGIWPESES 143

Query:   118 FSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAA 177
             FSD+GFGP PKKWKG C GGKNFTCNNK+IGAR Y+      G+  D +GHG++T STAA
Sbjct:   144 FSDKGFGPPPKKWKGVCKGGKNFTCNNKLIGARDYT----SEGTR-DLQGHGTHTTSTAA 198

Query:   178 GNKVKDASFLGIGQGMARGGVPSARISAYR-----G---EKILAAFDDAIADGVDIITIS 229
             GN V D SF GIG G ARGGVP++R++AY+     G   + +L+AFDDAIADGVD+I++S
Sbjct:   199 GNAVADTSFFGIGNGTARGGVPASRVAAYKVCTITGCSDDNVLSAFDDAIADGVDLISVS 258

Query:   230 LGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRL 289
             LG       A D IAIGAFHAM KGILTV+SAGN GP      S+APW+++VAA+TT+R 
Sbjct:   259 LGGDYPSLYAEDTIAIGAFHAMAKGILTVHSAGNAGPNPTTVVSVAPWMLTVAATTTNRR 318

Query:   290 FVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYAN--LVKGNIVLC 347
             F+ KVVLGNGKT+V + S+NAF  KGK +PL YG           DY N  LVKG I++ 
Sbjct:   319 FLTKVVLGNGKTLVGK-SVNAFDLKGKKYPLEYG-----------DYLNESLVKGKILVS 366

Query:   348 DEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTP-DKFNSIIHQFYQVIMNFLR 406
                SG  VA        I  DN+ Y      P    +    D   S I+       + L+
Sbjct:   367 RYLSGSEVA-----VSFITTDNKDYASISSRPLSVLSQDDFDSLVSYINSTRSPQGSVLK 421

Query:   407 SSIILN---PQA--------EILKTSVIK-DSDAPIVASFSSRGPNKYVPDILKPDISAP 454
             +  I N   P+           +   ++K D  AP V   ++  P   +P   + D    
Sbjct:   422 TEAIFNQLSPKVASFSSRGPNTIAVDILKPDISAPGVEILAAYSPLS-LPSEDRRDKRRV 480

Query:   455 GVNILAAYSPLAPISRDIE---DERHVKYN--IISGTSMACPHAAAWPMNSSKN--TQAE 507
               ++L+  S   P    +       H  ++  +I    M      AW MN++       E
Sbjct:   481 KYSVLSGTSMACPHVTGVAAYIKTFHPDWSPSVIQSAIMT----TAWQMNATGTGAESTE 536

Query:   508 FAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDNSTCSKGSEKTSP 567
             FAYG+GH++P+ A NPGLVYE  K D+I+ LC M Y    L+ ISGD   CS G  KT  
Sbjct:   537 FAYGAGHVDPIAAINPGLVYELNKTDHISFLCGMNYTSKTLKLISGDAVICS-G--KTLQ 593

Query:   568 KDLNYPSMAAQVS-SGESFTIKFPRTVTNIGLPNSTYKARILQN--SKISVNVVPEVLSF 624
             ++LNYPSM+A++S S  SFT+ F RTVTN+G  NSTYK++I+ N  SK++V V P VLS 
Sbjct:   594 RNLNYPSMSAKLSESNSSFTVTFKRTVTNLGTANSTYKSKIVLNHGSKLNVKVSPSVLSM 653

Query:   625 RSLNEKKSFIVTVTGKGLASGSIVSAALVWFDGSHIVRSPIV 666
             +SL EK+SF VTV+G  +      SA L+W DG+H VRSPIV
Sbjct:   654 KSLKEKQSFTVTVSGSNIDPKLPSSANLIWSDGTHNVRSPIV 695

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

TAIR|locus:2153291 SBT4.12 "AT5G59090" [Arabidopsis thaliana (taxid:3702)]

 Score = 1318 (469.0 bits), Expect = 1.6e-134, P = 1.6e-134
 Identities = 285/515 (55%), Positives = 352/515 (68%)

Query:     1 VYIVYMGSLPE-GEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQK 59
             VYIVYMGSL    +Y+P+S H SIL++V   SS E  LVRSYKRSFNGFAA+LT+ E   
Sbjct:    32 VYIVYMGSLSSRADYIPTSDHMSILQQVTGESSIEGRLVRSYKRSFNGFAARLTESERTL 91

Query:    60 LAGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRT--VESDLIVGVIDTGIWPQSES 117
             +A ++GVVSVFP++ LQLHTT SWDFMG  E    +R   +ESD I+GVIDTGIWP+S+S
Sbjct:    92 IAEIEGVVSVFPNKILQLHTTTSWDFMGVKEGKNTKRNLAIESDTIIGVIDTGIWPESKS 151

Query:   118 FSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAA 177
             FSD+GFGP PKKWKG C GGKNFTCNNK+IGAR Y+      G+  D  GHG++TASTAA
Sbjct:   152 FSDKGFGPPPKKWKGVCSGGKNFTCNNKLIGARDYT----SEGTR-DTSGHGTHTASTAA 206

Query:   178 GNKVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIADGVDIITIS 229
             GN VKD SF GIG G  RGGVP++RI+AY+         E +L++FDDAIADGVD+ITIS
Sbjct:   207 GNAVKDTSFFGIGNGTVRGGVPASRIAAYKVCTDSGCSSEALLSSFDDAIADGVDLITIS 266

Query:   230 LGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRL 289
             +G         D IAIGAFHAM KGILTV+SAGN+GPK    S +APW+ +VAASTT+R 
Sbjct:   267 IGFQFPSIFEDDPIAIGAFHAMAKGILTVSSAGNSGPKPTTVSHVAPWIFTVAASTTNRG 326

Query:   290 FVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYANL---------- 339
             F+ KVVLGNGKT+  R S+NAF  KGK +PL+YGK    SS+C    A L          
Sbjct:   327 FITKVVLGNGKTLAGR-SVNAFDMKGKKYPLVYGKSAA-SSACDAKTAALCAPACLNKSR 384

Query:   340 VKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQ 399
             VKG I++C   SGY +A+  GA  +I K  R  +V+     PAS +    F S++     
Sbjct:   385 VKGKILVCGGPSGYKIAKSVGAIAIIDKSPRP-DVAFTHHLPASGLKAKDFKSLV----- 438

Query:   400 VIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNIL 459
                +++ S    +PQA +LKT  I +  +P++ASFSSRGPN    DILKPDI+APGV IL
Sbjct:   439 ---SYIESQD--SPQAAVLKTETIFNRTSPVIASFSSRGPNTIAVDILKPDITAPGVEIL 493

Query:   460 AAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA 494
             AA+SP    S D  D R VKY++ SGTSMACPH A
Sbjct:   494 AAFSPNGEPSED--DTRRVKYSVFSGTSMACPHVA 526

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0048046 "apoplast" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2153296 AT5G59100 "AT5G59100" [Arabidopsis thaliana (taxid:3702)]

 Score = 1310 (466.2 bits), Expect = 1.1e-133, P = 1.1e-133
 Identities = 279/515 (54%), Positives = 356/515 (69%)

Query:     1 VYIVYMGSLPEGE-YLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQK 59
             VYIVY+GSLP  E Y P S H SIL+E+   S  EN LVRSYK+SFNGFAA+LT+ E ++
Sbjct:    34 VYIVYLGSLPSREEYTPMSDHMSILQEITGESLIENRLVRSYKKSFNGFAARLTESERKR 93

Query:    60 LAGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRT--VESDLIVGVIDTGIWPQSES 117
             LAGM+ VVSVFPSR L+L TT SW+FMG  E I  +RT  +ESD I+GVID+GI+P+S+S
Sbjct:    94 LAGMERVVSVFPSRKLKLQTTSSWNFMGLKEGIKTKRTRSIESDTIIGVIDSGIYPESDS 153

Query:   118 FSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAA 177
             FSD+GFGP PKKWKG C GGKNFTCNNK+IGAR Y+ +   N +A D  GHG++TAS AA
Sbjct:   154 FSDQGFGPPPKKWKGTCAGGKNFTCNNKVIGARDYTAKSKANQTARDYSGHGTHTASIAA 213

Query:   178 GNKVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIADGVDIITIS 229
             GN V +++F G+G G ARGGVP+ARI+ Y+        GE +++AFDDAIADGVD+I+IS
Sbjct:   214 GNAVANSNFYGLGNGTARGGVPAARIAVYKVCDNEGCDGEAMMSAFDDAIADGVDVISIS 273

Query:   230 LGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRL 289
             +   +      D IAIGAFHAM  G+LTVN+AGNNGPK    +S APW+ SVAAS T+R 
Sbjct:   274 IVLDNIPPFEEDPIAIGAFHAMAVGVLTVNAAGNNGPKISTVTSTAPWVFSVAASVTNRA 333

Query:   290 FVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYANL---------- 339
             F+ KVVLG+GK ++ R S+N +   G  +PL+YGK     S+C+ D A L          
Sbjct:   334 FMAKVVLGDGKILIGR-SVNTYDMNGTNYPLVYGKSAA-LSTCSVDKARLCEPKCLDGKL 391

Query:   340 VKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQ 399
             VKG IVLCD   G   A++ GA G I+K N   + + I  FP S ++ D + S++   Y 
Sbjct:   392 VKGKIVLCDSTKGLIEAQKLGAVGSIVK-NPEPDRAFIRSFPVSFLSNDDYKSLVS--Y- 447

Query:   400 VIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNIL 459
               MN  +     NP+A +LK+  I +  AP+VASFSSRGP+  V DILKPDI+APGV IL
Sbjct:   448 --MNSTK-----NPKATVLKSEEISNQRAPLVASFSSRGPSSIVSDILKPDITAPGVEIL 500

Query:   460 AAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA 494
             AAYSP +  +    D R VKY+++SGTSMACPH A
Sbjct:   501 AAYSPDSSPTESEFDTRRVKYSVLSGTSMACPHVA 535

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

TAIR|locus:2102807 AT3G46850 "AT3G46850" [Arabidopsis thaliana (taxid:3702)]

 Score = 1292 (459.9 bits), Expect = 9.1e-132, P = 9.1e-132
 Identities = 277/516 (53%), Positives = 351/516 (68%)

Query:     1 VYIVYMGSLPEG-EYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQK 59
             VYIVYMG+LP   +Y+P SHH SIL++V   SS ++ LVR+YKRSFNGFAA+LT+ E + 
Sbjct:    33 VYIVYMGALPSRVDYMPMSHHTSILQDVTGESSIQDRLVRNYKRSFNGFAARLTESEREI 92

Query:    60 LAGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRRT--VESDLIVGVIDTGIWPQSES 117
             LA M  VVSVFPS+ L L TT SW+FMG  E    +R   +ESD I+GVID+GI+P+S+S
Sbjct:    93 LASMDEVVSVFPSKNLNLQTTTSWNFMGLKEGKRTKRNPLIESDTIIGVIDSGIYPESDS 152

Query:   118 FSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDG-NGSAIDEEGHGSNTASTA 176
             FS +GFGP PKKWKG C GG NFTCNNK+IGARYY+ + +G   SA D  GHGS+TAS A
Sbjct:   153 FSGKGFGPPPKKWKGVCKGGTNFTCNNKLIGARYYTPKLEGFPESARDNTGHGSHTASIA 212

Query:   177 AGNKVKDASFLGIGQGMARGGVPSARISAYR----------GEKILAAFDDAIADGVDII 226
             AGN VK  SF G+G G  RGGVP+ARI+ Y+           + ILAAFDDAIAD VDII
Sbjct:   213 AGNAVKHVSFYGLGNGTVRGGVPAARIAVYKVCDPGVIRCTSDGILAAFDDAIADKVDII 272

Query:   227 TISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTT 286
             T+SLG  +      D +AIGAFHAM KGILTVN AGNNGP+     S+APWL +VAAS  
Sbjct:   273 TVSLGADAVGTFEEDTLAIGAFHAMAKGILTVNGAGNNGPERRTIVSMAPWLFTVAASNM 332

Query:   287 DRLFVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTN----SSS--CTEDY--AN 338
             +R F+ KVVLGNGKTIV R S+N+F   GK +PL+YGK  ++    SS+  C+     + 
Sbjct:   333 NRAFITKVVLGNGKTIVGR-SVNSFDLNGKKYPLVYGKSASSRCDASSAGFCSPGCLDSK 391

Query:   339 LVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFY 398
              VKG IVLCD       A+  GA   I++ N   + + +  FP S ++ D +N       
Sbjct:   392 RVKGKIVLCDTQRNPGEAQAMGAVASIVR-NPYEDAASVFSFPVSVLSEDDYN------- 443

Query:   399 QVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNI 458
              ++++++ S+   NP+A +LK+  I +  AP+VAS+SSRGPN  + DILKPDI+APG  I
Sbjct:   444 -IVLSYVNST--KNPKAAVLKSETIFNQKAPVVASYSSRGPNPLIHDILKPDITAPGSEI 500

Query:   459 LAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA 494
             LAAYSP  P S    D RHVKY +ISGTSM+CPH A
Sbjct:   501 LAAYSPYVPPSES--DTRHVKYTVISGTSMSCPHVA 534

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

TAIR|locus:2102792 AT3G46840 "AT3G46840" [Arabidopsis thaliana (taxid:3702)]

 Score = 1286 (457.8 bits), Expect = 3.9e-131, P = 3.9e-131
 Identities = 283/515 (54%), Positives = 356/515 (69%)

Query:     2 YIVYMGSLPEG-EYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKL 60
             YIVYMG+LP   +Y+P SHH SIL++V   SS E+ LVR+YKRSFNGFAA+LT  E + L
Sbjct:    35 YIVYMGALPARVDYMPMSHHTSILQDVTGESSIEDRLVRNYKRSFNGFAARLTKSEREIL 94

Query:    61 AGMKGVVSVFPSRTLQLHTTRSWDFMGFNESI-TQRRTV-ESDLIVGVIDTGIWPQSESF 118
             A M  VVSVFP++ L+L TT SW+FMG  ES  T+R T+ ESD I+GVID+GI+P+S+SF
Sbjct:    95 ASMDEVVSVFPNKKLKLQTTTSWNFMGLKESKRTKRNTIIESDTIIGVIDSGIYPESDSF 154

Query:   119 SDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDG-NGSAIDEEGHGSNTASTAA 177
             S +GFGP PKKWKG C GGKNFT NNK+IGARYY+ + +G   SA D  GHGS+TASTAA
Sbjct:   155 SGKGFGPPPKKWKGVCKGGKNFTWNNKLIGARYYTPKLEGFPESARDYMGHGSHTASTAA 214

Query:   178 GNKVKDASFLGIGQGMARGGVPSARISAYR----G------EKILAAFDDAIADGVDIIT 227
             GN VK  SF G+G G ARGGVP+ARI+ Y+    G      + ILAAFDDAIAD VDIIT
Sbjct:   215 GNAVKHVSFYGLGNGTARGGVPAARIAVYKVCDPGVDGCTTDGILAAFDDAIADKVDIIT 274

Query:   228 ISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTD 287
             IS+G  ++     D IAIGAFHAM KGIL VNSAGN+GP+    +SIAPW+ +VAAS T+
Sbjct:   275 ISIGGDNSSPFEEDPIAIGAFHAMAKGILIVNSAGNSGPEPSTVASIAPWMFTVAASNTN 334

Query:   288 RLFVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGK------GVTNSSSCTEDY--ANL 339
             R FV KVVLGNGKT  V  S+N+F   GK +PL+YGK      G  ++  C+     +  
Sbjct:   335 RAFVTKVVLGNGKT--VGRSVNSFDLNGKKYPLVYGKSASSSCGAASAGFCSPGCLDSKR 392

Query:   340 VKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQ 399
             VKG IVLCD       A+  GA   I++ +R  +V+ I  FP S +  D +N+++   Y 
Sbjct:   393 VKGKIVLCDSPQNPDEAQAMGAIASIVRSHRT-DVASIFSFPVSVLLEDDYNTVLS--Y- 448

Query:   400 VIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNIL 459
               MN  +     NP+A +LK+  I +  AP+VAS+ SRGPN  +PDILKPDI+APG  I+
Sbjct:   449 --MNSTK-----NPKAAVLKSETIFNQRAPVVASYFSRGPNTIIPDILKPDITAPGSEIV 501

Query:   460 AAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA 494
             AAYSP AP S  I D R VKY++ +GTSM+CPH A
Sbjct:   502 AAYSPDAPPS--ISDTRRVKYSVDTGTSMSCPHVA 534

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

TAIR|locus:2168444 AT5G59130 "AT5G59130" [Arabidopsis thaliana (taxid:3702)]

 Score = 1241 (441.9 bits), Expect = 2.3e-126, P = 2.3e-126
 Identities = 279/513 (54%), Positives = 342/513 (66%)

Query:     1 VYIVYMGSLPE-GEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQK 59
             VYIVYMGSLP   +Y P SHH +IL+EV   SS E  LVRSYKRSFNGF A+LT+ E ++
Sbjct:    35 VYIVYMGSLPSRADYTPMSHHMNILQEVARESSIEGRLVRSYKRSFNGFVARLTESERER 94

Query:    60 LAGMKGVVSVFPSRTLQLHTTRSWDFMGFNESITQRR--TVESDLIVGVIDTGIWPQSES 117
             +A    VVSVFP++ L+L T+ SWDFMG  E    +R  +VESD I+GV D GIWP+SES
Sbjct:    95 VA----VVSVFPNKKLKLQTSASWDFMGLKEGKGTKRNPSVESDTIIGVFDGGIWPESES 150

Query:   118 FSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAA 177
             FSD+GFGP PKKWKG C GGKNFTCNNK+IGAR+YS      G A D  GHG++TAS AA
Sbjct:   151 FSDKGFGPPPKKWKGICAGGKNFTCNNKLIGARHYS-----PGDARDSTGHGTHTASIAA 205

Query:   178 GNKVKDASFLGIGQGMARGGVPSARISAYR---GE----KILAAFDDAIADGVDIITISL 230
             GN V + SF GIG G  RG VP++RI+ YR   GE     IL+AFDDAI+DGVDIITIS+
Sbjct:   206 GNAVANTSFFGIGNGTVRGAVPASRIAVYRVCAGECRDDAILSAFDDAISDGVDIITISI 265

Query:   231 GDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLF 290
             GD +      D IAIGAFHAM+KGILTVN+AGN GP     +S+APWL++VAAST +R F
Sbjct:   266 GDINVYPFEKDPIAIGAFHAMSKGILTVNAAGNTGPDTASITSLAPWLLTVAASTANREF 325

Query:   291 VDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSS---CTEDY------ANLVK 341
             V KVVLG+GKT+V + S+N F  KGK FPL+YGK    S S   C ED       A+LVK
Sbjct:   326 VSKVVLGDGKTLVGK-SVNGFDLKGKKFPLVYGKSAALSLSQAKCAEDCTPECLDASLVK 384

Query:   342 GNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVI 401
             G I++C+ F  Y VA    A   I +D   +  + I   P S +  D F S++  F    
Sbjct:   385 GKILVCNRFLPY-VAYTKRAVAAIFEDGSDW--AQINGLPVSGLQKDDFESVLSYF---- 437

Query:   402 MNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAA 461
                 +S    +P+A +LK+  I    AP + SFSSRGPN  V DILKPDI+APG+ ILAA
Sbjct:   438 ----KSE--KSPEAAVLKSESIFYQTAPKILSFSSRGPNIIVADILKPDITAPGLEILAA 491

Query:   462 YSPLAPISRDIEDERHVKYNIISGTSMACPHAA 494
              S  A       D  +VKY++ SGTSM+CPHAA
Sbjct:   492 NSLRAS---PFYDTAYVKYSVESGTSMSCPHAA 521

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.IX.4016.1 hypothetical protein (687 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	667
cd04852	307	cd04852, Peptidases_S8_3, Peptidase S8 family doma	4e-86
cd07474	295	cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid	1e-24
pfam05922	76	pfam05922, Inhibitor_I9, Peptidase inhibitor I9	3e-17
cd04852	307	cd04852, Peptidases_S8_3, Peptidase S8 family doma	6e-15
cd07475	346	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8	2e-14
cd00306	241	cd00306, Peptidases_S8_S53, Peptidase domain in th	4e-13
cd07474	295	cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid	4e-10
cd07478	455	cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam	5e-10
cd04842	293	cd04842, Peptidases_S8_Kp43_protease, Peptidase S8	5e-10
cd07487	264	cd07487, Peptidases_S8_1, Peptidase S8 family doma	1e-09
cd07489	312	cd07489, Peptidases_S8_5, Peptidase S8 family doma	2e-09
cd07477	229	cd07477, Peptidases_S8_Subtilisin_subset, Peptidas	3e-09
cd04848	267	cd04848, Peptidases_S8_Autotransporter_serine_prot	5e-09
cd02120	126	cd02120, PA_subtilisin_like, PA_subtilisin_like: P	1e-08
cd07487	264	cd07487, Peptidases_S8_1, Peptidase S8 family doma	2e-08
cd07481	264	cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep	2e-08
cd07475	346	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8	5e-08
cd07489	312	cd07489, Peptidases_S8_5, Peptidase S8 family doma	1e-07
cd07484	260	cd07484, Peptidases_S8_Thermitase_like, Peptidase	1e-07
cd07493	261	cd07493, Peptidases_S8_9, Peptidase S8 family doma	2e-07
cd07477	229	cd07477, Peptidases_S8_Subtilisin_subset, Peptidas	1e-06
pfam00082	277	pfam00082, Peptidase_S8, Subtilase family	1e-06
cd07473	259	cd07473, Peptidases_S8_Subtilisin_like, Peptidase	2e-06
cd07490	254	cd07490, Peptidases_S8_6, Peptidase S8 family doma	5e-06
cd07480	297	cd07480, Peptidases_S8_12, Peptidase S8 family dom	1e-05
TIGR03921	350	TIGR03921, T7SS_mycosin, type VII secretion-associ	2e-05
cd07482	294	cd07482, Peptidases_S8_Lantibiotic_specific_protea	3e-05
pfam00082	277	pfam00082, Peptidase_S8, Subtilase family	5e-05
cd07490	254	cd07490, Peptidases_S8_6, Peptidase S8 family doma	7e-05
cd04077	255	cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep	7e-05
cd04842	293	cd04842, Peptidases_S8_Kp43_protease, Peptidase S8	4e-04
cd05561	239	cd05561, Peptidases_S8_4, Peptidase S8 family doma	4e-04
cd07473	259	cd07473, Peptidases_S8_Subtilisin_like, Peptidase	7e-04
pfam02225	96	pfam02225, PA, PA domain	8e-04
cd00306	241	cd00306, Peptidases_S8_S53, Peptidase domain in th	0.001
cd04857	412	cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_	0.001
cd07484	260	cd07484, Peptidases_S8_Thermitase_like, Peptidase	0.003

>gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3

 Score =  272 bits (697), Expect = 4e-86
 Identities = 107/236 (45%), Positives = 136/236 (57%), Gaps = 26/236 (11%)

Query: 75  LQLHTTRSWDFMGFNESITQRRTVES----DLIVGVIDTGIWPQSESFSDEGFGPAPKKW 130
            QLHTTRS DF+G   +        +     +I+GV+DTGIWP+  SF+D G GP P  W
Sbjct: 1   YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTW 60

Query: 131 KGACDGGKNFT---CNNKIIGARYYS--FRDDGNG-------SAIDEEGHGSNTASTAAG 178
            G C  G++F    CNNK+IGARY+S  +   G         S  D +GHG++TASTAAG
Sbjct: 61  PGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAG 120

Query: 179 NKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITIS 229
           N V +AS  G   G A G  P ARI+ Y+         G  ILAA D AIADGVD+I+ S
Sbjct: 121 NVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYS 180

Query: 230 LGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAAST 285
           +G   + D   D IAI   HA+  GI    SAGN+GP A    ++APW+ +VAAST
Sbjct: 181 IG-GGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST 235

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307

>gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins

 Score =  104 bits (262), Expect = 1e-24
 Identities = 62/198 (31%), Positives = 92/198 (46%), Gaps = 27/198 (13%)

Query: 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGN 159
             + V VIDTGI          GF     K      GG +F  ++             G+
Sbjct: 2   KGVKVAVIDTGIDYTHPDLGGPGFPNDKVK------GGYDFVDDDYDPMDTRPYPSPLGD 55

Query: 160 GSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEK 210
            SA D  GHG++ A   AGN V      G  +G+A    P A + AY+          + 
Sbjct: 56  ASAGDATGHGTHVAGIIAGNGVNV----GTIKGVA----PKADLYAYKVLGPGGSGTTDV 107

Query: 211 ILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGF 270
           I+AA + A+ DG+D+I +SLG  S+V+   D  AI   +A+  G++ V +AGN+GP    
Sbjct: 108 IIAAIEQAVDDGMDVINLSLG--SSVNGPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYT 165

Query: 271 --TSSIAPWLMSVAASTT 286
             + + AP  ++V AST 
Sbjct: 166 IGSPATAPSAITVGASTV 183

The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295

>gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9

 Score = 76.2 bits (188), Expect = 3e-17
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 1  VYIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKL 60
           YIV          + SSH         +  +A   ++ SYK  FNGFAAKLT+ E +KL
Sbjct: 1  TYIVKFKDGVSKAAVFSSHKSWHAS--SKEEAAGASILYSYKHGFNGFAAKLTEEEAEKL 58

Query: 61 AGMKGVVSVFPSRTLQLH 78
               V  V P + ++LH
Sbjct: 59 RKHPDVEYVEPDQVVELH 76

This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76

>gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3

 Score = 75.7 bits (187), Expect = 6e-15
 Identities = 27/48 (56%), Positives = 32/48 (66%), Gaps = 3/48 (6%)

Query: 447 LKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA 494
           LKPDI+APGV+ILAA++P      D  D R   +  ISGTSMA PH A
Sbjct: 236 LKPDIAAPGVDILAAWTP---EGADPGDARGEDFAFISGTSMASPHVA 280

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307

>gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases

 Score = 75.0 bits (185), Expect = 2e-14
 Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 21/187 (11%)

Query: 103 IVGVIDTGIWPQSESF-----SDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDD 157
           +V VID+G+ P  ++F     S   +    +  K     G     N K+  A  Y+  +D
Sbjct: 14  VVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNND 73

Query: 158 GNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------- 207
                 D   HG + A   AGN  ++ +  GI +G+A    P A++ A +          
Sbjct: 74  DILDEDDGSSHGMHVAGIVAGNGDEEDNGEGI-KGVA----PEAQLLAMKVFSNPEGGST 128

Query: 208 -GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGP 266
             +    A +DA+  G D+I +SLG T+      D        A   G++ V +AGN+G 
Sbjct: 129 YDDAYAKAIEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGN 188

Query: 267 KAGFTSS 273
               TS 
Sbjct: 189 SGSGTSK 195

Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346

>gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families

 Score = 69.2 bits (169), Expect = 4e-13
 Identities = 52/198 (26%), Positives = 72/198 (36%), Gaps = 44/198 (22%)

Query: 103 IVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSA 162
            V VIDTG+ P          G          DGG +   N             +G    
Sbjct: 2   TVAVIDTGVDPDHPDLDGLFGG---------GDGGNDDDDNE------------NGPTDP 40

Query: 163 IDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYRG---------EKILA 213
            D  GHG++ A   A +            G   G  P A++   +            I A
Sbjct: 41  DDGNGHGTHVAGIIAAS---------ANNGGGVGVAPGAKLIPVKVLDGDGSGSSSDIAA 91

Query: 214 AFDDAIAD-GVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTS 272
           A D A AD G D+I +SLG   +   +    AI    A   G+L V +AGN+GP  G   
Sbjct: 92  AIDYAAADQGADVINLSLGGPGSPPSSALSEAIDYALAK-LGVLVVAAAGNDGPDGGTNI 150

Query: 273 SI---APWLMSVAASTTD 287
                +P +++V A   D
Sbjct: 151 GYPAASPNVIAVGAVDRD 168

Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241

>gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 38/127 (29%)

Query: 420 TSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVK 479
           ++V   ++A  V   SSRGP       +KPDI APGV+I++                   
Sbjct: 181 STVADVAEADTVGPSSSRGPPTS-DSAIKPDIVAPGVDIMSTAPGSG-----------TG 228

Query: 480 YNIISGTSMACPHAA--------AWP-----------MNSSKNTQAE-------FAYGSG 513
           Y  +SGTSMA PH A        A P           MN++K               G+G
Sbjct: 229 YARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAG 288

Query: 514 HINPVKA 520
            ++ ++A
Sbjct: 289 RVDALRA 295

The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295

>gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins

 Score = 61.9 bits (151), Expect = 5e-10
 Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 15/64 (23%)

Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMAC 490
           +A FS RGP +     +KPDI+APGVNIL A                  Y   SGTS+A 
Sbjct: 359 IAIFSGRGPTR--DGRIKPDIAAPGVNILTASP-------------GGGYTTRSGTSVAA 403

Query: 491 PHAA 494
              A
Sbjct: 404 AIVA 407

GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455

>gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 412 NPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRD 471
           NP     +  + +  ++  VASFSSRGP       +KPD+ APG  IL+A S    I   
Sbjct: 182 NPSVSNGEGGLGQSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGGIGDT 239

Query: 472 IEDERHVKYNIISGTSMACPHAAA 495
            +      Y   SGTSMA P  A 
Sbjct: 240 SDS----AYTSKSGTSMATPLVAG 259

Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293

>gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1

 Score = 59.5 bits (145), Expect = 1e-09
 Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 8/64 (12%)

Query: 430 IVASFSSRGPNKYVPD-ILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSM 488
            ++ FSSRGP     D  +KPD+ APG NI++  SP       +       Y  +SGTSM
Sbjct: 179 GISYFSSRGPT---GDGRIKPDVVAPGENIVSCRSPGGNPGAGVGSG----YFEMSGTSM 231

Query: 489 ACPH 492
           A PH
Sbjct: 232 ATPH 235

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264

>gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 58/198 (29%), Positives = 82/198 (41%), Gaps = 54/198 (27%)

Query: 104 VGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSA- 162
           V V+DTGI     +     FGP  K       GG +F      +G       DD +G+  
Sbjct: 17  VAVVDTGIDYTHPALG-GCFGPGCK-----VAGGYDF------VG-------DDYDGTNP 57

Query: 163 -------IDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYRG------- 208
                  +D +GHG++ A   A N     +  G   G+A    P A + AYR        
Sbjct: 58  PVPDDDPMDCQGHGTHVAGIIAANP----NAYGF-TGVA----PEATLGAYRVFGCSGST 108

Query: 209 --EKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGP 266
             + I+AAF  A  DG D+IT SLG  S    + D  A+ A   +  G++   +AGN+G 
Sbjct: 109 TEDTIIAAFLRAYEDGADVITASLGGPSG--WSEDPWAVVASRIVDAGVVVTIAAGNDG- 165

Query: 267 KAGFTSSIAPWLMSVAAS 284
                    P+  S  AS
Sbjct: 166 ------ERGPFYASSPAS 177

gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312

>gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 54/196 (27%), Positives = 75/196 (38%), Gaps = 50/196 (25%)

Query: 104 VGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAI 163
           V VIDTGI                 K      GG NFT               D N    
Sbjct: 4   VAVIDTGIDSSHPDL----------KLNIV--GGANFT--------------GDDNNDYQ 37

Query: 164 DEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR--GEK-------ILAA 214
           D  GHG++ A   A     D     +  G+A    P A + A +   +        I+A 
Sbjct: 38  DGNGHGTHVAGIIAA---LDNGVGVV--GVA----PEADLYAVKVLNDDGSGTYSDIIAG 88

Query: 215 FDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSI 274
            + AI +G+DII +SLG  S      +  AI   +A   GIL V +AGN+G         
Sbjct: 89  IEWAIENGMDIINMSLGGPSDSPALRE--AIKKAYA--AGILVVAAAGNSGNGDSSYDYP 144

Query: 275 A--PWLMSVAASTTDR 288
           A  P +++V A  ++ 
Sbjct: 145 AKYPSVIAVGAVDSNN 160

This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229

>gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 50/186 (26%), Positives = 66/186 (35%), Gaps = 59/186 (31%)

Query: 104 VGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSF-RDDGNGSA 162
           VGVID+GI      F+                         ++  A YY    D G  S 
Sbjct: 7   VGVIDSGIDLSHPEFAG------------------------RVSEASYYVAVNDAGYASN 42

Query: 163 IDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGV-PSARISAYRG----------EKI 211
            D + HG++ A   A  +         G GM   GV P A + + R             I
Sbjct: 43  GDGDSHGTHVAGVIAAAR--------DGGGM--HGVAPDATLYSARASASAGSTFSDADI 92

Query: 212 LAAFDDAIADGVDIITISLGDT------------SAVDLAHDVIAIGAFHAMTKGILTVN 259
            AA+D   A GV II  S G              SA    + ++A  A  A   G L V 
Sbjct: 93  AAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALAR-AANAGGLFVF 151

Query: 260 SAGNNG 265
           +AGN+G
Sbjct: 152 AAGNDG 157

Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267

>gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 36/109 (33%), Positives = 47/109 (43%), Gaps = 17/109 (15%)

Query: 294 VVLGNGKTIVVRYSINAFTHKGKMFPLLYGK---GVTNSSSCTEDY--ANLVKGNIVLCD 348
           V LGNGKTIV   S+     K   +PL+Y     G  ++S C       + VKG IVLCD
Sbjct: 2   VTLGNGKTIV-GQSLYPGNLK--TYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCD 58

Query: 349 EFSGY------HVAREAGAAGLIL---KDNRLYNVSLILPFPASTVTPD 388
                         + AG AG+IL     + L  V+     PA  V  +
Sbjct: 59  RGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYE 107

This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126

>gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 43/203 (21%), Positives = 74/203 (36%), Gaps = 46/203 (22%)

Query: 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGN 159
             + V V+DTGI      F             G      +F                +G 
Sbjct: 2   KGITVAVLDTGIDAPHPDFD------------GRIIRFADFVN------------TVNGR 37

Query: 160 GSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-----GE----K 210
            +  D+ GHG++ A   AG+     +  G  +G+A    P A +   +     G      
Sbjct: 38  TTPYDDNGHGTHVAGIIAGS---GRASNGKYKGVA----PGANLVGVKVLDDSGSGSESD 90

Query: 211 ILAAFDDAIAD----GVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGP 266
           I+A  D  + +     + ++ +SLG         D +          GI+ V +AGN+GP
Sbjct: 91  IIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGP 150

Query: 267 KAGFTSS--IAPWLMSVAASTTD 287
             G  +S   +P +++V A   +
Sbjct: 151 GPGTITSPGNSPKVITVGAVDDN 173

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264

>gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 15/66 (22%)

Query: 430 IVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMA 489
           ++A FSSRGP+ Y    +KPDISAPGVNI +A                  Y   SGTSMA
Sbjct: 186 VLADFSSRGPSTY--GRIKPDISAPGVNIRSAVP-------------GGGYGSSSGTSMA 230

Query: 490 CPHAAA 495
            PH A 
Sbjct: 231 APHVAG 236

Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264

>gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases

 Score = 55.0 bits (133), Expect = 5e-08
 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 17/77 (22%)

Query: 420 TSVIKDSDAPIVASFSSRGPNKYVPDI-LKPDISAPGVNILAAYSPLAPISRDIEDERHV 478
              + + +   ++ FSS GP    PD+ LKPDI+APG NI +           + D    
Sbjct: 223 NKKVPNPNGGQMSGFSSWGP---TPDLDLKPDITAPGGNIYST----------VNDN--- 266

Query: 479 KYNIISGTSMACPHAAA 495
            Y  +SGTSMA PH A 
Sbjct: 267 TYGYMSGTSMASPHVAG 283

Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346

>gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 13/64 (20%)

Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
           + FSS GP   +   LKPD++APG NIL+ Y PLA             Y ++SGTSMA P
Sbjct: 189 SYFSSWGPTNEL--YLKPDVAAPGGNILSTY-PLAGGG----------YAVLSGTSMATP 235

Query: 492 HAAA 495
           + A 
Sbjct: 236 YVAG 239

gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312

>gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 51/198 (25%), Positives = 76/198 (38%), Gaps = 47/198 (23%)

Query: 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGN 159
           S + V V+DTG+ P             P   K     G +F                D +
Sbjct: 28  SGVTVAVVDTGVDPTH-----------PDLLKVKFVLGYDFV---------------DND 61

Query: 160 GSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-----GEKILAA 214
             A+D+ GHG++ A   A            G G+A G  P A+I   +     G   LA 
Sbjct: 62  SDAMDDNGHGTHVAGIIAAA-------TNNGTGVA-GVAPKAKIMPVKVLDANGSGSLAD 113

Query: 215 FDDAI---AD-GVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGF 270
             + I   AD G  +I +SLG         + I     +A  KG++ V +AGN G  +  
Sbjct: 114 IANGIRYAADKGAKVINLSLGGGLGSTALQEAIN----YAWNKGVVVVAAAGNEGVSSVS 169

Query: 271 TSSIAPWLMSVAASTTDR 288
             +  P  ++VAA+  D 
Sbjct: 170 YPAAYPGAIAVAATDQDD 187

Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260

>gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 30/146 (20%)

Query: 143 NNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNK-------VKDASFLGIGQGMAR 195
           N +I+G   Y F D+ N +   ++ HG+   ST AG           +AS+      +AR
Sbjct: 26  NLRILGE--YDFVDNSNNTNYTDDDHGTAVLSTMAGYTPGVMVGTAPNASYY-----LAR 78

Query: 196 GGVPSARISAYRGEKI--LAAFDDAIADGVDIITISLG----DTSAVDLAHD-------V 242
               +   S    E+   +AA + A + GVDII+ SLG    D       +         
Sbjct: 79  TEDVA---SETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKTSF 135

Query: 243 IAIGAFHAMTKGILTVNSAGNNGPKA 268
           I+  A  A +KG+L VNSAGN G   
Sbjct: 136 ISRAANIAASKGMLVVNSAGNEGSTQ 161

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261

>gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 21/63 (33%)

Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
           ASFSS GP          +++APGV+IL+ Y    P +          Y  +SGTSMA P
Sbjct: 163 ASFSSTGPE--------VELAAPGVDILSTY----PNND---------YAYLSGTSMATP 201

Query: 492 HAA 494
           H A
Sbjct: 202 HVA 204

This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229

>gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 36/178 (20%), Positives = 59/178 (33%), Gaps = 39/178 (21%)

Query: 103 IVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSA 162
            VGV+DTGI       S                    +       G  +    D      
Sbjct: 1   TVGVLDTGIDVNHPDLSG------------------RYIGLAYRNGYDFVD-NDPDPTPD 41

Query: 163 IDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAA 214
            D  GHG++ A   A      +  +G+         P+A++ + +          ++  A
Sbjct: 42  DDNNGHGTHVAGIIAAGDNNGSGGVGV--------APNAKLESVKVLPGSGGTDSELAGA 93

Query: 215 FDDAI--ADGVDIITISLGDTSAVDLAHDVIAI-GAFH-AMTKGILTVNSAGNNGPKA 268
            + A    + + +I +SLG       +        A + A  KG L V +AGN G  A
Sbjct: 94  IEWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLFVVAAGNGGDYA 151

Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277

>gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 57/226 (25%), Positives = 79/226 (34%), Gaps = 74/226 (32%)

Query: 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGN 159
            D++V VIDTG+      ++          W             N I         DDGN
Sbjct: 2   GDVVVAVIDTGV-----DYNHPDL--KDNMWVNP-----GEIPGNGI--------DDDGN 41

Query: 160 G---------------SAIDEEGHGSNTAST--AAGNKVKDASFLGIGQGMARGGVPSAR 202
           G                 +D+ GHG++ A    A GN          G G+A G   + +
Sbjct: 42  GYVDDIYGWNFVNNDNDPMDDNGHGTHVAGIIGAVGNN---------GIGIA-GVAWNVK 91

Query: 203 I-------SAYRG--EKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTK 253
           I       +   G     + A D A+  G  II  S G         D IA     A+  
Sbjct: 92  IMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGPSQALRDAIA----RAIDA 147

Query: 254 GILTVNSAGNNG---------PKAGFTSSIAPWLMSVAAST-TDRL 289
           GIL V +AGN+G         P A +       ++SVAA+   D L
Sbjct: 148 GILFVAAAGNDGTNNDKTPTYP-ASYDL---DNIISVAATDSNDAL 189

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259

>gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 46/192 (23%), Positives = 70/192 (36%), Gaps = 42/192 (21%)

Query: 104 VGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAI 163
           V V+DTG+       +         +W        +F  N +I          D  G   
Sbjct: 4   VAVLDTGVDADHPDLAGR-----VAQWA-------DFDENRRISATEV----FDAGG--- 44

Query: 164 DEEGHGSNTASTAAGNKVKDASFLGIGQGMA------RGGVPSARISAYRGEKILAAFDD 217
               HG++ + T  G   K     G+  G+A       G V      +     I+A  + 
Sbjct: 45  ----HGTHVSGTIGGGGAK-----GVYIGVAPEADLLHGKVLDDGGGSLSQ--IIAGMEW 93

Query: 218 AIADGVDIITISLG-DTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAP 276
           A+    D++++SLG    + D   +  A+ A    T G L V SAGN G     +   A 
Sbjct: 94  AVEKDADVVSMSLGGTYYSEDPLEE--AVEALSNQT-GALFVVSAGNEGHGTSGSPGSAY 150

Query: 277 WLMSVAASTTDR 288
             +SV A   DR
Sbjct: 151 AALSVGA--VDR 160

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254

>gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 13/46 (28%)

Query: 449 PDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA 494
            DI+APGV+I++A                  Y  +SGTSMA PH A
Sbjct: 213 VDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVA 245

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297

>gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 50/198 (25%), Positives = 69/198 (34%), Gaps = 41/198 (20%)

Query: 104 VGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAI 163
           V VIDTG+               P+   G    G +F                 G+G+  
Sbjct: 17  VAVIDTGV------------DDHPR-LPGLVLPGGDFV--------------GSGDGTD- 48

Query: 164 DEEGHGSNTASTAAGNKVKDASFLG---------IGQGMARGGVPSARISAYRGEKILAA 214
           D +GHG+  A   AG   +   F G         I Q  A                +  A
Sbjct: 49  DCDGHGTLVAGIIAGRPGEGDGFSGVAPDARILPIRQTSAAFEPDEGTSGVGDLGTLAKA 108

Query: 215 FDDAIADGVDIITISLGDTSAVDLAHDVIAIGAF--HAMTKGILTVNSAGNNGPKAGFTS 272
              A   G D+I ISL          D   +GA   +A+ KG++ V +AGN G     T+
Sbjct: 109 IRRAADLGADVINISLVACLPAGSGADDPELGAAVRYALDKGVVVVAAAGNTGGDGQKTT 168

Query: 273 SIAP-WLMSV-AASTTDR 288
            + P W   V A  + DR
Sbjct: 169 VVYPAWYPGVLAVGSIDR 186

Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350

>gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 48/183 (26%), Positives = 66/183 (36%), Gaps = 51/183 (27%)

Query: 104 VGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAI 163
           V VID+GI P      +                 KN        G       + G+ + I
Sbjct: 4   VAVIDSGIDPDHPDLKNS-----------ISSYSKNLVPKG---GYDGKEAGETGDINDI 49

Query: 164 -DEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR--GEK-------ILA 213
            D+ GHG+  A   A N            G  +G  P   I +YR  G         I+ 
Sbjct: 50  VDKLGHGTAVAGQIAAN------------GNIKGVAPGIGIVSYRVFGSCGSAESSWIIK 97

Query: 214 AFDDAIADGVDIITISLG-----------DTSAVDLAHDVIAIGAFHAMTKGILTVNSAG 262
           A  DA  DGVD+I +SLG           D    +     I     +A +KG + V +AG
Sbjct: 98  AIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAIN----YAKSKGSIVVAAAG 153

Query: 263 NNG 265
           N+G
Sbjct: 154 NDG 156

Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294

>gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 13/65 (20%)

Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMAC 490
           +A FS+ G      D +KPDI APG NIL++                  Y+  SGTSMA 
Sbjct: 177 IADFSNYGG---PVDGIKPDIVAPGGNILSSGP----------GGDLGGYDSHSGTSMAA 223

Query: 491 PHAAA 495
           P  A 
Sbjct: 224 PLVAG 228

Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277

>gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 18/72 (25%)

Query: 432 ASFSSRG---------PNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNI 482
           A FSS G         P+    +  KPD++APGV++ +A                 +Y  
Sbjct: 165 AWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSARQGANGDG---------QYTR 215

Query: 483 ISGTSMACPHAA 494
           +SGTSMA PH A
Sbjct: 216 LSGTSMAAPHVA 227

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254

>gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins

 Score = 44.8 bits (107), Expect = 7e-05
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 11/45 (24%)

Query: 450 DISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA 494
           DI APGV+IL+A+                    +SGTSMA PH A
Sbjct: 194 DIFAPGVDILSAWI-----------GSDTATATLSGTSMAAPHVA 227

The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255

>gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 51/214 (23%), Positives = 75/214 (35%), Gaps = 61/214 (28%)

Query: 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNN--KIIGARYYSFRDD 157
              IVGV DTG+      F D  F               N T     KI+  RY S  D 
Sbjct: 7   KGQIVGVADTGLDTNHCFFYDPNF---------------NKTNLFHRKIV--RYDSLSDT 49

Query: 158 GNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------- 207
            +    D +GHG++ A   AG    D+S + + +G+A    P A++              
Sbjct: 50  KD----DVDGHGTHVAGIIAGKGN-DSSSISLYKGVA----PKAKLYFQDIGDTSGNLSS 100

Query: 208 ---GEKILAAFDDAIAD------GVDIITISLGDTSAVD-LAHDVIAIGAFHAMTKGILT 257
                K+ +   DA A       G  +         A D  A++             IL 
Sbjct: 101 PPDLNKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYN----------NPDILF 150

Query: 258 VNSAGNNGPKA---GFTSSIAPWLMSVAASTTDR 288
           V SAGN+G        + + A  +++V AS    
Sbjct: 151 VFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPS 184

Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293

>gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 41/170 (24%), Positives = 58/170 (34%), Gaps = 43/170 (25%)

Query: 104 VGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAI 163
           VG+IDTGI     + S                                      G G+  
Sbjct: 3   VGMIDTGIDTAHPALS----------------------------AVVIARLFFAGPGAPA 34

Query: 164 DEEGHGSNTASTAAGNKVKDASFLG----IGQGMARGGVPSARISAYRGEKILAAFDDAI 219
               HG+  AS  AG   +    L      G  +          SA     +  A D   
Sbjct: 35  PSA-HGTAVASLLAGAGAQRPGLLPGADLYGADVFGRAGGGEGASA---LALARALDWLA 90

Query: 220 ADGVDIITISL-GDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKA 268
             GV ++ ISL G  +A+ LA   +A     A  +G++ V +AGN+GP A
Sbjct: 91  EQGVRVVNISLAGPPNAL-LA-AAVAA----AAARGMVLVAAAGNDGPAA 134

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239

>gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins

 Score = 41.4 bits (98), Expect = 7e-04
 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 25/79 (31%)

Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
           ASFS+ G    V      D++APGV+I    S                Y  +SGTSMA P
Sbjct: 190 ASFSNYGKKT-V------DLAAPGVDI---LSTSPGGG----------YGYMSGTSMATP 229

Query: 492 H---AAA--WPMNSSKNTQ 505
           H   AAA    +N +    
Sbjct: 230 HVAGAAALLLSLNPNLTAA 248

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259

>gnl|CDD|216938 pfam02225, PA, PA domain

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 13/96 (13%)

Query: 311 FTHKGKMFPLLYGKGVTNSSSCT--EDYANLVKGNIVLCD-----EFSGYHVAREAGAAG 363
                   PL+Y     ++  C   +   + VKG IVL              A+ AGAAG
Sbjct: 1   SPGGTGTGPLVYVGNGDDAGGCCPEDLADSDVKGKIVLVRRGGCSFVEKAENAQRAGAAG 60

Query: 364 LILKDNRLYNVSL------ILPFPASTVTPDKFNSI 393
           +I+ +N    +         +  P   ++ +   ++
Sbjct: 61  VIIYNNDTGGLGGTVGDPSDVTIPVVFISYEDGEAL 96

The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96

>gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 19/71 (26%)

Query: 425 DSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIIS 484
           D D    +  S+ G           DI+APG +IL++ +                Y  +S
Sbjct: 166 DRDGTPASPSSNGGA--------GVDIAAPGGDILSSPTTG-----------GGGYATLS 206

Query: 485 GTSMACPHAAA 495
           GTSMA P  A 
Sbjct: 207 GTSMAAPIVAG 217

Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241

>gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 39/138 (28%)

Query: 152 YSFR--DDGNGSAI--DEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGV-PSARISAY 206
           YS    DDGN  +I  D   HG++ A  AA +  ++           R GV P A+I + 
Sbjct: 167 YSVNIYDDGNLLSIVTDSGAHGTHVAGIAAAHFPEEP---------ERNGVAPGAQIVSI 217

Query: 207 R-----------GEKILAAFDDAIADGVDIITISLGDTSA-------VDLAHDVIAIGAF 248
           +           G  ++ A   AI    D+I +S G+ +        ++L ++ +     
Sbjct: 218 KIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYGEATHWPNSGRIIELMNEAVN---- 273

Query: 249 HAMTKGILTVNSAGNNGP 266
                G++ V+SAGNNGP
Sbjct: 274 ---KHGVIFVSSAGNNGP 288

Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412

>gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 21/64 (32%)

Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
           ASFS+ G  K+V      D+SAPG  IL+          D        Y  +SGTSMA P
Sbjct: 190 ASFSNYG--KWV------DVSAPGGGILSTT-----PDGD--------YAYMSGTSMATP 228

Query: 492 HAAA 495
           H A 
Sbjct: 229 HVAG 232

Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	667
cd04852	307	Peptidases_S8_3 Peptidase S8 family domain, unchar	100.0
cd07478	455	Peptidases_S8_CspA-like Peptidase S8 family domain	100.0
cd07475	346	Peptidases_S8_C5a_Peptidase Peptidase S8 family do	100.0
cd07497	311	Peptidases_S8_14 Peptidase S8 family domain, uncha	100.0
cd05562	275	Peptidases_S53_like Peptidase domain in the S53 fa	100.0
cd07479	255	Peptidases_S8_SKI-1_like Peptidase S8 family domai	100.0
PTZ00262	639	subtilisin-like protease; Provisional	100.0
cd07489	312	Peptidases_S8_5 Peptidase S8 family domain, unchar	100.0
cd07476	267	Peptidases_S8_thiazoline_oxidase_subtilisin-like_p	100.0
cd07474	295	Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam	100.0
cd04857	412	Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid	100.0
cd07493	261	Peptidases_S8_9 Peptidase S8 family domain, unchar	100.0
cd07483	291	Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa	100.0
KOG1153	501	consensus Subtilisin-related protease/Vacuolar pro	100.0
cd07481	264	Peptidases_S8_BacillopeptidaseF-like Peptidase S8	100.0
cd07487	264	Peptidases_S8_1 Peptidase S8 family domain, unchar	100.0
cd07491	247	Peptidases_S8_7 Peptidase S8 family domain, unchar	100.0
cd07485	273	Peptidases_S8_Fervidolysin_like Peptidase S8 famil	100.0
cd05561	239	Peptidases_S8_4 Peptidase S8 family domain, unchar	100.0
cd04842	293	Peptidases_S8_Kp43_protease Peptidase S8 family do	100.0
cd07484	260	Peptidases_S8_Thermitase_like Peptidase S8 family	100.0
cd04847	291	Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil	100.0
cd07494	298	Peptidases_S8_10 Peptidase S8 family domain, uncha	100.0
cd07480	297	Peptidases_S8_12 Peptidase S8 family domain, uncha	100.0
cd04843	277	Peptidases_S8_11 Peptidase S8 family domain, uncha	100.0
cd07490	254	Peptidases_S8_6 Peptidase S8 family domain, unchar	100.0
cd07496	285	Peptidases_S8_13 Peptidase S8 family domain, uncha	100.0
cd04077	255	Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8	100.0
cd07498	242	Peptidases_S8_15 Peptidase S8 family domain, uncha	100.0
cd07477	229	Peptidases_S8_Subtilisin_subset Peptidase S8 famil	99.98
PF00082	282	Peptidase_S8: Subtilase family This is family S8 i	99.98
cd07473	259	Peptidases_S8_Subtilisin_like Peptidase S8 family	99.98
KOG4266	1033	consensus Subtilisin kexin isozyme-1/site 1 protea	99.97
cd07482	294	Peptidases_S8_Lantibiotic_specific_protease Peptid	99.97
cd04059	297	Peptidases_S8_Protein_convertases_Kexins_Furin-lik	99.97
cd07492	222	Peptidases_S8_8 Peptidase S8 family domain, unchar	99.97
cd04848	267	Peptidases_S8_Autotransporter_serine_protease_like	99.96
cd07488	247	Peptidases_S8_2 Peptidase S8 family domain, unchar	99.95
KOG1114	1304	consensus Tripeptidyl peptidase II [Posttranslatio	99.95
cd00306	241	Peptidases_S8_S53 Peptidase domain in the S8 and S	99.91
COG1404	508	AprE Subtilisin-like serine proteases [Posttransla	99.8
cd04056	361	Peptidases_S53 Peptidase domain in the S53 family.	99.58
KOG3526	629	consensus Subtilisin-like proprotein convertase [P	99.38
cd02133	143	PA_C5a_like PA_C5a_like: Protease-associated domai	99.15
cd02120	126	PA_subtilisin_like PA_subtilisin_like: Protease-as	99.12
PF05922	82	Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP	98.9
PF02225	101	PA: PA domain; InterPro: IPR003137 The PA (Proteas	98.4
cd04818	118	PA_subtilisin_1 PA_subtilisin_1: Protease-associat	98.28
cd04816	122	PA_SaNapH_like PA_SaNapH_like: Protease-associated	98.28
cd02130	122	PA_ScAPY_like PA_ScAPY_like: Protease-associated d	98.21
PF06280	112	DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0	98.2
cd02129	120	PA_hSPPL_like PA_hSPPL_like: Protease-associated d	98.12
cd02127	118	PA_hPAP21_like PA_hPAP21_like: Protease-associated	98.08
cd02122	138	PA_GRAIL_like PA _GRAIL_like: Protease-associated	98.0
cd00538	126	PA PA: Protease-associated (PA) domain. The PA dom	97.99
cd02132	139	PA_GO-like PA_GO-like: Protease-associated domain	97.96
cd02126	126	PA_EDEM3_like PA_EDEM3_like: protease associated d	97.94
cd04813	117	PA_1 PA_1: Protease-associated (PA) domain subgrou	97.89
cd02125	127	PA_VSR PA_VSR: Protease-associated (PA) domain-con	97.84
cd02124	129	PA_PoS1_like PA_PoS1_like: Protease-associated (PA	97.79
cd04817	139	PA_VapT_like PA_VapT_like: Protease-associated dom	97.74
COG4934	1174	Predicted protease [Posttranslational modification	97.63
cd04819	127	PA_2 PA_2: Protease-associated (PA) domain subgrou	97.61
cd02123	153	PA_C_RZF_like PA_C-RZF_ like: Protease-associated	97.43
KOG3525	431	consensus Subtilisin-like proprotein convertase [P	96.64
cd04822	151	PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do	96.41
PF14874	102	PapD-like: Flagellar-associated PapD-like	96.35
cd04815	134	PA_M28_2 PA_M28_2: Protease-associated (PA) domain	96.3
cd02128	183	PA_TfR PA_TfR: Protease-associated domain containi	96.28
cd04820	137	PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do	95.93
cd04814	142	PA_M28_1 PA_M28_1: Protease-associated (PA) domain	95.87
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	94.54
cd02131	153	PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso	93.6
cd02121	220	PA_GCPII_like PA_GCPII_like: Protease-associated d	92.38
KOG2442	541	consensus Uncharacterized conserved protein, conta	91.83
PF11614	118	FixG_C: IG-like fold at C-terminal of FixG, putati	91.55
cd04821	157	PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do	87.4
COG1470	513	Predicted membrane protein [Function unknown]	83.09
KOG1114	1304	consensus Tripeptidyl peptidase II [Posttranslatio	83.05
PF06030	121	DUF916: Bacterial protein of unknown function (DUF	82.73
PF00345	122	PapD_N: Pili and flagellar-assembly chaperone, Pap	81.05

>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3

Probab=100.00  E-value=5.4e-43  Score=370.81  Aligned_cols=207  Identities=51%  Similarity=0.830  Sum_probs=180.5

Q ss_pred             cccCCCCCccccCCChhhhcc-----CCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCc---cCCcee
Q 038474           75 LQLHTTRSWDFMGFNESITQR-----RTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNF---TCNNKI  146 (667)
Q Consensus        75 ~~~~~~~s~~~ig~~~~~w~~-----~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f---~~n~ki  146 (667)
                      ++|+++++++|++++ .+|+.     +++|+||+|||||||||++||+|.+....+.+..|.+.|..+..+   .|++|+
T Consensus         1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki   79 (307)
T cd04852           1 YQLHTTRSPDFLGLP-GAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKL   79 (307)
T ss_pred             CCccccCCHHHcCCC-CCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeE
Confidence            478999999999999 66664     899999999999999999999999988888899999999988777   499999


Q ss_pred             EeeeeccCC---------CCCCCCCCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------c
Q 038474          147 IGARYYSFR---------DDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------G  208 (667)
Q Consensus       147 ig~~~~~~~---------~~~~~~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~  208 (667)
                      ++.++|..+         ..+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|         .
T Consensus        80 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~  159 (307)
T cd04852          80 IGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFG  159 (307)
T ss_pred             EEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccH
Confidence            999999642         2235667889999999999999998766666666667789999999999999         4


Q ss_pred             hhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEcc
Q 038474          209 EKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAA  283 (667)
Q Consensus       209 ~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA  283 (667)
                      +++++|+++|+++|++|||||||.... ....+.+..+++.+.++|++||+||||+|+...+.++.+||+++|||
T Consensus       160 ~~~~~ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga  233 (307)
T cd04852         160 SDILAAIDQAIADGVDVISYSIGGGSP-DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAA  233 (307)
T ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCC-CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEe
Confidence            579999999999999999999998732 44567888888899999999999999999887788888999999976

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins

Probab=100.00  E-value=4.2e-41  Score=371.93  Aligned_cols=348  Identities=23%  Similarity=0.248  Sum_probs=215.0

Q ss_pred             CCCCCcEEEEEcCCCCCCCcCCCC-CCCCCCCCCccccccCCCCccCCceeEeeeecc----------CCCCCCCCCCCC
Q 038474           97 TVESDLIVGVIDTGIWPQSESFSD-EGFGPAPKKWKGACDGGKNFTCNNKIIGARYYS----------FRDDGNGSAIDE  165 (667)
Q Consensus        97 ~~G~gv~VgViDtGid~~Hp~f~d-~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~----------~~~~~~~~~~D~  165 (667)
                      ++|+||+|||||||||+.||+|.+ .+.+++...|++....+...   ....+...+.          .++.+.....|+
T Consensus         1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~   77 (455)
T cd07478           1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP---GGYYGGGEYTEEIINAALASDNPYDIVPSRDE   77 (455)
T ss_pred             CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC---ccccCceEEeHHHHHHHHhcCCccccCcCCCC
Confidence            479999999999999999999985 45677788898876654221   1111221111          112233456789


Q ss_pred             CCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe-----c--------------hhHHHHHHHHHHC-----
Q 038474          166 EGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-----G--------------EKILAAFDDAIAD-----  221 (667)
Q Consensus       166 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-----~--------------~~i~~a~~~a~~~-----  221 (667)
                      .||||||||||||+..++.        .+.||||+|+|+++|     .              .+++.|++|+++.     
T Consensus        78 ~GHGThvAGIiag~~~~~~--------~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~  149 (455)
T cd07478          78 NGHGTHVAGIAAGNGDNNP--------DFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELN  149 (455)
T ss_pred             CCchHHHHHHHhcCCCCCC--------CccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999864322        238999999999999     1              3799999999874     


Q ss_pred             CCcEEEeCcCCCCCCCChhhHHHHHHHHhhcC-CeEEEEecCCCCCCCCCcCCCCCceEEEccccCCcceeeeEEeCCCe
Q 038474          222 GVDIITISLGDTSAVDLAHDVIAIGAFHAMTK-GILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKVVLGNGK  300 (667)
Q Consensus       222 g~dVin~SlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~  300 (667)
                      .+.|||||||...+++...++++.++..+.++ |++||+||||+|....++....    ...    ...-...+.++.++
T Consensus       150 ~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~----~~~----~~~~~ie~~v~~~~  221 (455)
T cd07478         150 KPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGI----VPN----GETKTVELNVGEGE  221 (455)
T ss_pred             CCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeee----ccC----CceEEEEEEECCCC
Confidence            47899999999866777788999999888776 9999999999997544433210    000    00000112222222


Q ss_pred             EEEEEEeeeccCCCCceeeEEEccCCCCCC------CCCccccccccccEEEEee-----------chhhHHHHhcCceE
Q 038474          301 TIVVRYSINAFTHKGKMFPLLYGKGVTNSS------SCTEDYANLVKGNIVLCDE-----------FSGYHVAREAGAAG  363 (667)
Q Consensus       301 ~~~g~~s~~~~~~~~~~~~lv~~~~~~~~~------~C~~~~~~~~~gkIvl~~~-----------~~~~~~~~~~Ga~g  363 (667)
                      .... ..++......-.+.|+.+.......      ......+.....+|.+..+           .-+. .-...|.+-
T Consensus       222 ~~~~-~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~-~~~~~GiW~  299 (455)
T cd07478         222 KGFN-LEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRF-KNIKPGIWK  299 (455)
T ss_pred             cceE-EEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEEc-cCCCccceE
Confidence            1111 1122111111112222222111000      0000000111112222211           0011 224457788


Q ss_pred             EEEecCCCCCcccccccceEEeChhhHHHHHHhhhhchhhhhcccCCCCceEEEee-----eeeec-CCCCCcccccCCC
Q 038474          364 LILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEILK-----TSVIK-DSDAPIVASFSSR  437 (667)
Q Consensus       364 ~i~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~-----~t~~~-~~~~~~~a~FSSr  437 (667)
                      +.+.........+..+||.-.+..++..            |+.+.  ...+.+++.     .++-. +.....++.||||
T Consensus       300 i~~~~~~~~~g~~~~Wlp~~~~~~~~t~------------f~~~~--~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~  365 (455)
T cd07478         300 IRLTGVSITDGRFDAWLPSRGLLSENTR------------FLEPD--PYTTLTIPGTARSVITVGAYNQNNNSIAIFSGR  365 (455)
T ss_pred             EEEEeccCCCceEEEEecCcCcCCCCCE------------eecCC--CCceEecCCCCCCcEEEEEEeCCCCcccCccCC
Confidence            8888776666666677776655544333            45444  444444421     11222 2234569999999


Q ss_pred             CCCCCCCCCCCCceeeCCccEEeeeCCCCCCCCCcCCccceeeEEEcccCCchhhhh
Q 038474          438 GPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA  494 (667)
Q Consensus       438 GPt~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~SGTSMAaPhVA  494 (667)
                      ||+.  ++++||||+|||++|+++++.+             .|..+|||||||||||
T Consensus       366 G~~~--~~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~va  407 (455)
T cd07478         366 GPTR--DGRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVA  407 (455)
T ss_pred             CcCC--CCCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHH
Confidence            9998  8999999999999999998864             6999999999999999

GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure

>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases

Probab=100.00  E-value=4.1e-41  Score=362.38  Aligned_cols=173  Identities=25%  Similarity=0.308  Sum_probs=132.2

Q ss_pred             hhhccCC-CCCCcEEEEEcCCCCCCCcCCCCCCCCCCCC-----CccccccCCCCccCCceeEeeeeccCCCCCCCCCCC
Q 038474           91 SITQRRT-VESDLIVGVIDTGIWPQSESFSDEGFGPAPK-----KWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAID  164 (667)
Q Consensus        91 ~~w~~~~-~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~-----~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D  164 (667)
                      .+|+++. +|+||+|||||||||++||+|.+....+...     .+...+..+...+++.+++..++|..+........|
T Consensus         1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (346)
T cd07475           1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILDEDD   80 (346)
T ss_pred             ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCCCCC
Confidence            3799887 9999999999999999999998654332111     223333344444678899999988754333333557


Q ss_pred             CCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe-----------chhHHHHHHHHHHCCCcEEEeCcCCC
Q 038474          165 EEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-----------GEKILAAFDDAIADGVDIITISLGDT  233 (667)
Q Consensus       165 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-----------~~~i~~a~~~a~~~g~dVin~SlG~~  233 (667)
                      ..+|||||||||+|...+..+     ...+.||||+|+|+.+|           ...++++++++++.|++|||||||..
T Consensus        81 ~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~  155 (346)
T cd07475          81 GSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGST  155 (346)
T ss_pred             CCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence            899999999999998643211     12349999999999998           34589999999999999999999987


Q ss_pred             CCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCC
Q 038474          234 SAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKA  268 (667)
Q Consensus       234 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~  268 (667)
                      .........+..++.++.++|++||+||||+|...
T Consensus       156 ~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~  190 (346)
T cd07475         156 AGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSG  190 (346)
T ss_pred             CCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccC
Confidence            43334556778888899999999999999998654

Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr

>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14

Probab=100.00  E-value=6.4e-41  Score=353.34  Aligned_cols=253  Identities=26%  Similarity=0.247  Sum_probs=162.2

Q ss_pred             CCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhcc
Q 038474           99 ESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAG  178 (667)
Q Consensus        99 G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag  178 (667)
                      |+||+|||||||||.+||||.+....    .|+.      .|.+...+....++.++  ....+.|++||||||||||||
T Consensus         1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~------~~d~~~~~~~g~d~~~~--~~~~~~D~~gHGThvAGiiag   68 (311)
T cd07497           1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKL------KFDYKAYLLPGMDKWGG--FYVIMYDFFSHGTSCASVAAG   68 (311)
T ss_pred             CCCeEEEEEeCCcCCCChhHhcccCC----Cccc------ccCcCCCccCCcCCCCC--ccCCCCCccccchhHHHHHhc
Confidence            89999999999999999999743110    1110      01111122222222211  113467899999999999999


Q ss_pred             ccCCCCccccc-cccceeecccCcEEEEEe---c------hhHHH-------HHHHH--HHCCCcEEEeCcCCCCCCC--
Q 038474          179 NKVKDASFLGI-GQGMARGGVPSARISAYR---G------EKILA-------AFDDA--IADGVDIITISLGDTSAVD--  237 (667)
Q Consensus       179 ~~~~~~~~~G~-~~g~~~GvAP~A~l~~~k---~------~~i~~-------a~~~a--~~~g~dVin~SlG~~~~~~--  237 (667)
                      ......+.+++ ....+.||||+|+|+.+|   .      ..+++       +++|.  .+++++|||||||......  
T Consensus        69 ~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~  148 (311)
T cd07497          69 RGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTG  148 (311)
T ss_pred             cCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCccc
Confidence            86432222211 112358999999999999   1      11233       23333  3679999999999852111  


Q ss_pred             --ChhhHHHHHHHHh-hcCCeEEEEecCCCCCCCC--CcCCCCCceEEEccccCCcceeeeEEeCCCeEEEEEEeeeccC
Q 038474          238 --LAHDVIAIGAFHA-MTKGILTVNSAGNNGPKAG--FTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFT  312 (667)
Q Consensus       238 --~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~s~~~~~  312 (667)
                        ...+..+..+..+ .++|++||+||||+|+...  +.|..++++|+|||++.....                ..+.  
T Consensus       149 ~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~----------------~~~~--  210 (311)
T cd07497         149 YAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYR----------------PFYL--  210 (311)
T ss_pred             cccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCccc----------------chhh--
Confidence              0112233333332 3899999999999998644  456678999999998632100                0000  


Q ss_pred             CCCceeeEEEccCCCCCCCCCccccccccccEEEEeechhhHHHHhcCceEEEEecCCCCCcccccccceEEeChhhHHH
Q 038474          313 HKGKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNS  392 (667)
Q Consensus       313 ~~~~~~~lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~iP~~~i~~~~g~~  392 (667)
                                                                                                      
T Consensus       211 --------------------------------------------------------------------------------  210 (311)
T cd07497         211 --------------------------------------------------------------------------------  210 (311)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhhhchhhhhcccCCCCceEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceeeCCccEEeeeCCCCCCCCCc
Q 038474          393 IIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDI  472 (667)
Q Consensus       393 l~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~a~FSSrGPt~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~  472 (667)
                                 +...                 ....+.++.||||||+.  ++++||||+|||++|+++.+......   
T Consensus       211 -----------~~~~-----------------~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~---  257 (311)
T cd07497         211 -----------FGYL-----------------PGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGG---  257 (311)
T ss_pred             -----------hccc-----------------cCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCc---
Confidence                       0000                 01135689999999998  89999999999999999976542100   


Q ss_pred             CCccceeeEEEcccCCchhhhh
Q 038474          473 EDERHVKYNIISGTSMACPHAA  494 (667)
Q Consensus       473 ~~~~~~~y~~~SGTSMAaPhVA  494 (667)
                      .......|..+|||||||||||
T Consensus       258 ~~~~~~~y~~~sGTSmAaP~Va  279 (311)
T cd07497         258 ALDGNEAFDLFGGTSMATPMTA  279 (311)
T ss_pred             ccCCCcceeeecchhhhhHHHH
Confidence            0112347999999999999999

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd05562 Peptidases_S53_like Peptidase domain in the S53 family

Probab=100.00  E-value=2.6e-40  Score=343.55  Aligned_cols=151  Identities=21%  Similarity=0.224  Sum_probs=116.0

Q ss_pred             CCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhh
Q 038474           96 RTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTAST  175 (667)
Q Consensus        96 ~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgi  175 (667)
                      +++|+||+|||||||||.+||+|.+-..+..+..+                    .+..+   .....|..+||||||||
T Consensus         1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~--------------------~~~~~---~~~~~d~~gHGT~vAgi   57 (275)
T cd05562           1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNV--------------------NVLGD---LDGGSGGGDEGRAMLEI   57 (275)
T ss_pred             CCCCCceEEEEEeCCccccccccccccCCCCCcce--------------------eeccc---cCCCCCCCchHHHHHHH
Confidence            57899999999999999999865432111111111                    11100   12356788999999999


Q ss_pred             hccccCCCCccccccccceeecccCcEEEEEe----chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhhHHHHHHHHhh
Q 038474          176 AAGNKVKDASFLGIGQGMARGGVPSARISAYR----GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAM  251 (667)
Q Consensus       176 iag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k----~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~a~~~a~  251 (667)
                      |+                  ||||+|+|+.++    .+++++||+|+++.|++|||||||......+....+..++.++.
T Consensus        58 i~------------------GvAP~a~l~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~ai~~a~  119 (275)
T cd05562          58 IH------------------DIAPGAELAFHTAGGGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVDEVV  119 (275)
T ss_pred             Hh------------------ccCCCCEEEEEecCCCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHHHHHHH
Confidence            84                  889999999999    66799999999999999999999986333234456788888888


Q ss_pred             cC-CeEEEEecCCCCCCCC-CcCCCCCceEEEccccCC
Q 038474          252 TK-GILTVNSAGNNGPKAG-FTSSIAPWLMSVAASTTD  287 (667)
Q Consensus       252 ~~-Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~d  287 (667)
                      ++ |++||+||||+|.... ..++..|++|+|||++.+
T Consensus       120 ~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~  157 (275)
T cd05562         120 ASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYG  157 (275)
T ss_pred             HcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccC
Confidence            87 9999999999998543 457788999999998644

Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi

>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins

Probab=100.00  E-value=7.9e-40  Score=337.10  Aligned_cols=150  Identities=23%  Similarity=0.313  Sum_probs=119.0

Q ss_pred             hccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchh
Q 038474           93 TQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNT  172 (667)
Q Consensus        93 w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThV  172 (667)
                      |+++++|+||+|||||||||.+||+|.+.                         +...+|..    .....|..||||||
T Consensus         1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~-------------------------~~~~~~~~----~~~~~d~~gHGT~V   51 (255)
T cd07479           1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV-------------------------KERTNWTN----EKTLDDGLGHGTFV   51 (255)
T ss_pred             CCCCCCCCCCEEEEEeCCCCCCCcchhcc-------------------------ccccccCC----CCCCCCCCCcHHHH
Confidence            89999999999999999999999999731                         00111211    12456788999999


Q ss_pred             hhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhhHH
Q 038474          173 ASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVI  243 (667)
Q Consensus       173 Agiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~  243 (667)
                      ||||+|+..           .+.||||+|+|+.+|         .+.++++++||+++++||||||||...   +...++
T Consensus        52 AGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~---~~~~~~  117 (255)
T cd07479          52 AGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD---FMDKPF  117 (255)
T ss_pred             HHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC---CCCcHH
Confidence            999998741           138999999999999         345889999999999999999999862   234566


Q ss_pred             HHHHHHhhcCCeEEEEecCCCCCCCCC--cCCCCCceEEEcccc
Q 038474          244 AIGAFHAMTKGILTVNSAGNNGPKAGF--TSSIAPWLMSVAAST  285 (667)
Q Consensus       244 ~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~~p~vitVgA~~  285 (667)
                      ..++.++.++|++||+||||+|+...+  .+...+++|+|||.+
T Consensus       118 ~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~  161 (255)
T cd07479         118 VDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID  161 (255)
T ss_pred             HHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec
Confidence            667788889999999999999975443  456678899998754

SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem

>PTZ00262 subtilisin-like protease; Provisional

Probab=100.00  E-value=3.9e-40  Score=365.15  Aligned_cols=163  Identities=18%  Similarity=0.195  Sum_probs=116.7

Q ss_pred             cCCChhhhc--cCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCcee--EeeeeccCCCCCCCC
Q 038474           86 MGFNESITQ--RRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKI--IGARYYSFRDDGNGS  161 (667)
Q Consensus        86 ig~~~~~w~--~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~ki--ig~~~~~~~~~~~~~  161 (667)
                      ++++ ++|+  .+.+|+||+|||||||||++||||.+.- ...+....|.  .+.+-..|+.+  +.+++|..+   ..+
T Consensus       301 i~~~-~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni-~~n~~el~Gr--dgiDdD~nG~vdd~~G~nfVd~---~~~  373 (639)
T PTZ00262        301 TRLD-ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNI-DVNVKELHGR--KGIDDDNNGNVDDEYGANFVNN---DGG  373 (639)
T ss_pred             hCch-HHHHHhhccCCCCcEEEEEccCCCCCChhhhhhc-ccccccccCc--cccccccCCcccccccccccCC---CCC
Confidence            4566 6776  3568999999999999999999998531 1000101110  00000001111  223444322   345


Q ss_pred             CCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCC
Q 038474          162 AIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGD  232 (667)
Q Consensus       162 ~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~  232 (667)
                      |.|..||||||||||||...++.   |     +.||||+|+|+.+|         .+++++||+||++.|++|||||||+
T Consensus       374 P~D~~GHGTHVAGIIAA~gnN~~---G-----i~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSlG~  445 (639)
T PTZ00262        374 PMDDNYHGTHVSGIISAIGNNNI---G-----IVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSFSF  445 (639)
T ss_pred             CCCCCCcchHHHHHHhccccCCC---c-----eeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEecccc
Confidence            78999999999999999753321   2     38999999999999         5679999999999999999999997


Q ss_pred             CCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCC
Q 038474          233 TSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPK  267 (667)
Q Consensus       233 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~  267 (667)
                      .    .....+..++.+|.++|++||+||||+|+.
T Consensus       446 ~----~~s~~l~~AV~~A~~kGILVVAAAGN~g~~  476 (639)
T PTZ00262        446 D----EYSGIFNESVKYLEEKGILFVVSASNCSHT  476 (639)
T ss_pred             C----CccHHHHHHHHHHHHCCCEEEEeCCCCCCC
Confidence            6    123567788899999999999999999864

>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5

Probab=100.00  E-value=1.2e-38  Score=338.42  Aligned_cols=167  Identities=29%  Similarity=0.440  Sum_probs=127.9

Q ss_pred             CCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCC-------CCCC
Q 038474           87 GFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR-------DDGN  159 (667)
Q Consensus        87 g~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~-------~~~~  159 (667)
                      +++ .+|+.+++|+||+|||||+|||++||+|.+. +.+                 +.++.+.++|.++       ..+.
T Consensus         1 ~v~-~~~~~g~tG~gv~VaViDsGid~~hp~l~~~-~~~-----------------~~~~~~~~d~~~~~~~~~~~~~~~   61 (312)
T cd07489           1 GVD-KLHAEGITGKGVKVAVVDTGIDYTHPALGGC-FGP-----------------GCKVAGGYDFVGDDYDGTNPPVPD   61 (312)
T ss_pred             Chh-hHHhCCCCCCCCEEEEEECCCCCCChhhhcC-CCC-----------------CceeccccccCCcccccccCCCCC
Confidence            355 8999999999999999999999999999853 111                 1122333333221       2234


Q ss_pred             CCCCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCc
Q 038474          160 GSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISL  230 (667)
Q Consensus       160 ~~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~Sl  230 (667)
                      ..+.|..||||||||||+|...+    .|     +.||||+|+|+.+|         ...+++++++|++++++||||||
T Consensus        62 ~~~~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~  132 (312)
T cd07489          62 DDPMDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASL  132 (312)
T ss_pred             CCCCCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCC
Confidence            56678899999999999998642    23     38999999999999         44589999999999999999999


Q ss_pred             CCCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCC---CcCCCCCceEEEcc
Q 038474          231 GDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAG---FTSSIAPWLMSVAA  283 (667)
Q Consensus       231 G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA  283 (667)
                      |..  ..+..+.+...+.++.++|+++|+||||+|....   ..+...|++|+||+
T Consensus       133 g~~--~~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga  186 (312)
T cd07489         133 GGP--SGWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVAS  186 (312)
T ss_pred             CcC--CCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEE
Confidence            987  3344577788888899999999999999986532   33455677777765

gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases

Probab=100.00  E-value=1.2e-37  Score=322.63  Aligned_cols=158  Identities=20%  Similarity=0.234  Sum_probs=126.7

Q ss_pred             hhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcch
Q 038474           92 ITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSN  171 (667)
Q Consensus        92 ~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGTh  171 (667)
                      +|..+++|+||+|||||+|||.+||+|.+..+.+..                       .+..   ......|..+||||
T Consensus         2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~-----------------------~~~~---~~~~~~~~~gHGT~   55 (267)
T cd07476           2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLF-----------------------TYAA---AACQDGGASAHGTH   55 (267)
T ss_pred             ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccccc-----------------------Cccc---cCCCCCCCCCcHHH
Confidence            799999999999999999999999999853221110                       0000   11234567899999


Q ss_pred             hhhhhccccCCCCccccccccceeecccCcEEEEEe----------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhh
Q 038474          172 TASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR----------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHD  241 (667)
Q Consensus       172 VAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k----------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~  241 (667)
                      |||+|+|....          .+.||||+|+|+.++          ..++++||+||++.|+||||||||..........
T Consensus        56 VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~  125 (267)
T cd07476          56 VASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADP  125 (267)
T ss_pred             HHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCH
Confidence            99999987421          238999999999988          2468999999999999999999997633334456


Q ss_pred             HHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEcccc
Q 038474          242 VIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAAST  285 (667)
Q Consensus       242 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~  285 (667)
                      .+..++.+|.++|++||+||||+|.....+|+..|++|+|||++
T Consensus       126 ~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~  169 (267)
T cd07476         126 ILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMD  169 (267)
T ss_pred             HHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeec
Confidence            78888899999999999999999987777888899999999854

Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).

>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins

Probab=100.00  E-value=1.3e-36  Score=320.17  Aligned_cols=159  Identities=36%  Similarity=0.509  Sum_probs=123.3

Q ss_pred             CCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCC------------CCCCCCCC
Q 038474           99 ESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDG------------NGSAIDEE  166 (667)
Q Consensus        99 G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~------------~~~~~D~~  166 (667)
                      |+||+|||||+||+++||+|.+..                  ..++++...++|..+...            .....|..
T Consensus         1 G~gV~VaViDsGi~~~hp~l~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (295)
T cd07474           1 GKGVKVAVIDTGIDYTHPDLGGPG------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDAT   62 (295)
T ss_pred             CCCCEEEEEECCcCCCCcccccCC------------------CCCCceeeeeECccCCCCcccccccccccccCCCCCCC
Confidence            899999999999999999998532                  123445555555432111            11244688


Q ss_pred             CCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCCCC
Q 038474          167 GHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSAVD  237 (667)
Q Consensus       167 gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~  237 (667)
                      +|||||||+|+|...+.        ..+.|+||+|+|+.+|         ..+++++|+|+++++++|||||||...  .
T Consensus        63 ~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~--~  132 (295)
T cd07474          63 GHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV--N  132 (295)
T ss_pred             CcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC--C
Confidence            99999999999986431        2238999999999998         556899999999999999999999872  2


Q ss_pred             ChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCc--CCCCCceEEEcccc
Q 038474          238 LAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFT--SSIAPWLMSVAAST  285 (667)
Q Consensus       238 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~  285 (667)
                      ...+.+..++.++.++|+++|+||||+|......  +...+++|+|||+.
T Consensus       133 ~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~  182 (295)
T cd07474         133 GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGAST  182 (295)
T ss_pred             CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeee
Confidence            2456778888899999999999999998765544  56779999999864

The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II

Probab=100.00  E-value=1.8e-36  Score=326.14  Aligned_cols=114  Identities=26%  Similarity=0.361  Sum_probs=87.4

Q ss_pred             CCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe-----------chhHHHHHHHHHHCCCcEEEeCcC
Q 038474          163 IDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-----------GEKILAAFDDAIADGVDIITISLG  231 (667)
Q Consensus       163 ~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-----------~~~i~~a~~~a~~~g~dVin~SlG  231 (667)
                      .|+.+|||||||||||+..++        ..+.||||+|+|+.+|           ..++++|+++|++.|++|||||||
T Consensus       182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG  253 (412)
T cd04857         182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG  253 (412)
T ss_pred             CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence            467899999999999985322        2248999999999999           135889999999999999999999


Q ss_pred             CCCCCCChhhHHHHHHHH-hhcCCeEEEEecCCCCCCCCCcCC---CCCceEEEcccc
Q 038474          232 DTSAVDLAHDVIAIGAFH-AMTKGILTVNSAGNNGPKAGFTSS---IAPWLMSVAAST  285 (667)
Q Consensus       232 ~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~~---~~p~vitVgA~~  285 (667)
                      ........ ..+..++.+ +.++|+++|+||||+|+..+++..   .++++|+|||+.
T Consensus       254 ~~~~~~~~-~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~  310 (412)
T cd04857         254 EATHWPNS-GRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYV  310 (412)
T ss_pred             cCCCCccc-hHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEccee
Confidence            87321111 233344444 346899999999999987766543   468999999964

Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.

>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9

Probab=100.00  E-value=2.6e-36  Score=312.41  Aligned_cols=156  Identities=31%  Similarity=0.359  Sum_probs=120.6

Q ss_pred             CcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhcccc
Q 038474          101 DLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNK  180 (667)
Q Consensus       101 gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~  180 (667)
                      ||+||||||||+++||+|.....                 ..+.++++.++|..+...  ...|..+|||||||+|+|..
T Consensus         1 Gv~VaviDsGi~~~h~~~~~~~~-----------------~~~~~i~~~~~~~~~~~~--~~~~~~~HGT~vagiia~~~   61 (261)
T cd07493           1 GITIAVIDAGFPKVHEAFAFKHL-----------------FKNLRILGEYDFVDNSNN--TNYTDDDHGTAVLSTMAGYT   61 (261)
T ss_pred             CCEEEEEccCCCccCcchhhhcc-----------------ccCCceeeeecCccCCCC--CCCCCCCchhhhheeeeeCC
Confidence            79999999999999999952211                 124567777877643211  13678899999999999974


Q ss_pred             CCCCccccccccceeecccCcEEEEEe-----------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCC-----------
Q 038474          181 VKDASFLGIGQGMARGGVPSARISAYR-----------GEKILAAFDDAIADGVDIITISLGDTSAVDL-----------  238 (667)
Q Consensus       181 ~~~~~~~G~~~g~~~GvAP~A~l~~~k-----------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~-----------  238 (667)
                      .          +...||||+|+|+.+|           ..+++.+++++.+.|++|||||||.......           
T Consensus        62 ~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~  131 (261)
T cd07493          62 P----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDG  131 (261)
T ss_pred             C----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccccccc
Confidence            2          2348999999999998           3357899999999999999999998632111           


Q ss_pred             hhhHHHHHHHHhhcCCeEEEEecCCCCCC---CCCcCCCCCceEEEcccc
Q 038474          239 AHDVIAIGAFHAMTKGILTVNSAGNNGPK---AGFTSSIAPWLMSVAAST  285 (667)
Q Consensus       239 ~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~---~~~~~~~~p~vitVgA~~  285 (667)
                      ....+..++..+.++|++||+||||+|..   ...+|...+++|+|||.+
T Consensus       132 ~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~  181 (261)
T cd07493         132 KTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD  181 (261)
T ss_pred             cchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec
Confidence            12457778888999999999999999976   345677789999998853

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins

Probab=100.00  E-value=4.8e-36  Score=314.96  Aligned_cols=158  Identities=25%  Similarity=0.390  Sum_probs=106.3

Q ss_pred             CCcEEEEEcCCCCCCCcCCCCCCCCC-CCCCccccccC---------CCCcc---CCceeEeeeeccCC-----CCCCCC
Q 038474          100 SDLIVGVIDTGIWPQSESFSDEGFGP-APKKWKGACDG---------GKNFT---CNNKIIGARYYSFR-----DDGNGS  161 (667)
Q Consensus       100 ~gv~VgViDtGid~~Hp~f~d~~~~~-~~~~~~g~~~~---------g~~f~---~n~kiig~~~~~~~-----~~~~~~  161 (667)
                      ++|+|||||||||++||+|++.-... .....++....         |.+|.   ..+++++...+...     ..+...
T Consensus         1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   80 (291)
T cd07483           1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDVNG   80 (291)
T ss_pred             CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccccccccCC
Confidence            68999999999999999998531100 00001111111         11220   11112221111100     111234


Q ss_pred             CCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe--------chhHHHHHHHHHHCCCcEEEeCcCCC
Q 038474          162 AIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIADGVDIITISLGDT  233 (667)
Q Consensus       162 ~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k--------~~~i~~a~~~a~~~g~dVin~SlG~~  233 (667)
                      +.|..+|||||||||+|...++   .|     +.||||+|+|+.+|        ..++++||+||++.|++|||||||..
T Consensus        81 ~~~~~gHGT~VAGiIaa~~~n~---~g-----~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~  152 (291)
T cd07483          81 PISDADHGTHVAGIIAAVRDNG---IG-----IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFGKS  152 (291)
T ss_pred             CCCCCCcHHHHHHHHhCcCCCC---Cc-----eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence            5568999999999999986432   12     38999999999999        46789999999999999999999976


Q ss_pred             CCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCC
Q 038474          234 SAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPK  267 (667)
Q Consensus       234 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~  267 (667)
                      .  ......+..++..|.++|+++|+||||+|..
T Consensus       153 ~--~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~  184 (291)
T cd07483         153 F--SPNKEWVDDAIKYAESKGVLIVHAAGNDGLD  184 (291)
T ss_pred             C--CCccHHHHHHHHHHHhCCeEEEEeCCCCCCC
Confidence            2  2233567778888999999999999999864

Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat

>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-36  Score=315.12  Aligned_cols=237  Identities=16%  Similarity=0.227  Sum_probs=175.0

Q ss_pred             CEEEEeCCCCCCCCCchhHHHHHHHHHhcC------CCCcc------------cEEEEec---ceeeEEEEEeCHHHHHH
Q 038474            1 VYIVYMGSLPEGEYLPSSHHQSILEEVVEG------SSAEN------------ILVRSYK---RSFNGFAAKLTDHEIQK   59 (667)
Q Consensus         1 ~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------------~v~~~y~---~~~ng~s~~l~~~~~~~   59 (667)
                      .|||.++.... -.....|++|+.+..+..      +++-.            .+.+.|.   .+|+|..-..+.+-+..
T Consensus        82 ~YiV~f~~~~~-q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~v~~  160 (501)
T KOG1153|consen   82 RYIVVFKPDAS-QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGESVCS  160 (501)
T ss_pred             ceEEEeCCCcc-HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccceeee
Confidence            39999995442 233455555554433321      11101            1344443   38888999999999999


Q ss_pred             HHcCCCeeEEEcCccccc--------CCCCCccccCCCh------hhhcc----CCCCCCcEEEEEcCCCCCCCcCCCCC
Q 038474           60 LAGMKGVVSVFPSRTLQL--------HTTRSWDFMGFNE------SITQR----RTVESDLIVGVIDTGIWPQSESFSDE  121 (667)
Q Consensus        60 L~~~p~V~~v~~~~~~~~--------~~~~s~~~ig~~~------~~w~~----~~~G~gv~VgViDtGid~~Hp~f~d~  121 (667)
                      +++.|-++.++++...+.        +....|.+-.+..      .-|-.    -..|+||...|+||||+.+||+|.++
T Consensus       161 i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dFegR  240 (501)
T KOG1153|consen  161 IRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDFEGR  240 (501)
T ss_pred             eccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccccccccc
Confidence            999999999998877654        3344555544432      12221    24899999999999999999999864


Q ss_pred             CCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhccccCCCCccccccccceeecccCc
Q 038474          122 GFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSA  201 (667)
Q Consensus       122 ~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A  201 (667)
                            +.|-. |..                     +.....|++||||||||+|++..              .|+|.++
T Consensus       241 ------a~wGa-~i~---------------------~~~~~~D~nGHGTH~AG~I~sKt--------------~GvAK~s  278 (501)
T KOG1153|consen  241 ------AIWGA-TIP---------------------PKDGDEDCNGHGTHVAGLIGSKT--------------FGVAKNS  278 (501)
T ss_pred             ------eeccc-ccC---------------------CCCcccccCCCcceeeeeeeccc--------------ccccccc
Confidence                  33311 110                     01235689999999999999885              7999999


Q ss_pred             EEEEEe---------chhHHHHHHHHHHC---------CCcEEEeCcCCCCCCCChhhHHHHHHHHhhcCCeEEEEecCC
Q 038474          202 RISAYR---------GEKILAAFDDAIAD---------GVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGN  263 (667)
Q Consensus       202 ~l~~~k---------~~~i~~a~~~a~~~---------g~dVin~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN  263 (667)
                      +|+.+|         .+++++++|++++.         +..|.|||+|+.     ..-.+..|+.+|.+.||++++||||
T Consensus       279 ~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~-----~S~aLn~AV~~A~~~Gi~fa~AAGN  353 (501)
T KOG1153|consen  279 NLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGF-----RSAALNMAVNAASERGIHFAVAAGN  353 (501)
T ss_pred             ceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCc-----ccHHHHHHHHHHhhcCeEEEEcCCC
Confidence            999999         78999999999886         478999999997     3457889999999999999999999


Q ss_pred             CCCCCC-CcCCCCCceEEEcccc
Q 038474          264 NGPKAG-FTSSIAPWLMSVAAST  285 (667)
Q Consensus       264 ~G~~~~-~~~~~~p~vitVgA~~  285 (667)
                      +..+.+ +.|+.+..+|||||++
T Consensus       354 e~eDAC~~SPass~~aITVGAst  376 (501)
T KOG1153|consen  354 EHEDACNSSPASSKKAITVGAST  376 (501)
T ss_pred             cchhhhccCcccccccEEecccc
Confidence            987765 5567889999999975

>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins

Probab=100.00  E-value=1.2e-35  Score=308.04  Aligned_cols=213  Identities=32%  Similarity=0.428  Sum_probs=161.0

Q ss_pred             CCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhcc
Q 038474           99 ESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAG  178 (667)
Q Consensus        99 G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag  178 (667)
                      |+||+||||||||+++||+|.+.        |++....        .+...+.+.........+.|..+|||||||||+|
T Consensus         1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~--------~~~~~~~~~d~~~~~~~~~d~~~HGT~vagii~g   64 (264)
T cd07481           1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGG--------SADHDYNWFDPVGNTPLPYDDNGHGTHTMGTMVG   64 (264)
T ss_pred             CCCcEEEEEeCCCCCCChhHhhc--------ccccCCC--------CcccccccccCCCCCCCCCCCCCchhhhhhheee
Confidence            89999999999999999999864        1111000        0000011110111134567889999999999998


Q ss_pred             ccCCCCccccccccceeecccCcEEEEEe--------chhHHHHHHHHHH------------CCCcEEEeCcCCCCCCCC
Q 038474          179 NKVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIA------------DGVDIITISLGDTSAVDL  238 (667)
Q Consensus       179 ~~~~~~~~~G~~~g~~~GvAP~A~l~~~k--------~~~i~~a~~~a~~------------~g~dVin~SlG~~~~~~~  238 (667)
                      ....         +...||||+|+|+.+|        ..+++++++++++            .|++|||||||....   
T Consensus        65 ~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~---  132 (264)
T cd07481          65 NDGD---------GQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG---  132 (264)
T ss_pred             cCCC---------CCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC---
Confidence            7532         1127999999999999        4568999999875            789999999998722   


Q ss_pred             hhhHHHHHHHHhhcCCeEEEEecCCCCCCCCC---cCCCCCceEEEccccCCcceeeeEEeCCCeEEEEEEeeeccCCCC
Q 038474          239 AHDVIAIGAFHAMTKGILTVNSAGNNGPKAGF---TSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKG  315 (667)
Q Consensus       239 ~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~s~~~~~~~~  315 (667)
                      ....+..++..+.++|++||+||||+|.....   ++...|++|+|||.+.+                            
T Consensus       133 ~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~----------------------------  184 (264)
T cd07481         133 DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN----------------------------  184 (264)
T ss_pred             CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC----------------------------
Confidence            23455666777888999999999999865432   56778899999875421                            


Q ss_pred             ceeeEEEccCCCCCCCCCccccccccccEEEEeechhhHHHHhcCceEEEEecCCCCCcccccccceEEeChhhHHHHHH
Q 038474          316 KMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIH  395 (667)
Q Consensus       316 ~~~~lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~  395 (667)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (264)
T cd07481         185 --------------------------------------------------------------------------------  184 (264)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhchhhhhcccCCCCceEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceeeCCccEEeeeCCCCCCCCCcCCc
Q 038474          396 QFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDE  475 (667)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~a~FSSrGPt~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~  475 (667)
                                                       ..++.||++||..  .+++||||+|||.+|+++++..          
T Consensus       185 ---------------------------------~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~~----------  219 (264)
T cd07481         185 ---------------------------------DVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPGG----------  219 (264)
T ss_pred             ---------------------------------CCCccccCCCCCC--CCCcCceEEECCCCeEEecCCC----------
Confidence                                             3456899999998  7999999999999999998763          


Q ss_pred             cceeeEEEcccCCchhhhhc
Q 038474          476 RHVKYNIISGTSMACPHAAA  495 (667)
Q Consensus       476 ~~~~y~~~SGTSMAaPhVAa  495 (667)
                         .|..++|||||||+||+
T Consensus       220 ---~~~~~~GTS~AaP~vaG  236 (264)
T cd07481         220 ---GYGSSSGTSMAAPHVAG  236 (264)
T ss_pred             ---ceEeeCcHHHHHHHHHH
Confidence               68999999999999993

Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.

>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1

Probab=100.00  E-value=3.2e-35  Score=304.30  Aligned_cols=222  Identities=28%  Similarity=0.444  Sum_probs=171.8

Q ss_pred             CCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhcc
Q 038474           99 ESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAG  178 (667)
Q Consensus        99 G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag  178 (667)
                      |+||+|+|||+||+++||+|.+....                        .+.+...........|..+|||||||+|+|
T Consensus         1 G~gv~VaviDsGv~~~h~~l~~~~~~------------------------~~~~~~~~~~~~~~~d~~~HGT~vAgiiag   56 (264)
T cd07487           1 GKGITVAVLDTGIDAPHPDFDGRIIR------------------------FADFVNTVNGRTTPYDDNGHGTHVAGIIAG   56 (264)
T ss_pred             CCCcEEEEEeCCCCCCCccccccccc------------------------cccccccccCCCCCCCCCCchHHHHHHHhc
Confidence            89999999999999999999853111                        011110001234566788999999999999


Q ss_pred             ccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHC----CCcEEEeCcCCCCCCCChhhHHHH
Q 038474          179 NKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIAD----GVDIITISLGDTSAVDLAHDVIAI  245 (667)
Q Consensus       179 ~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~----g~dVin~SlG~~~~~~~~~~~~~~  245 (667)
                      ...+.       .+...||||+|+|+.+|         ..+++++++|+++.    +++|||||||.........+.+..
T Consensus        57 ~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~~  129 (264)
T cd07487          57 SGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQ  129 (264)
T ss_pred             CCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHHH
Confidence            86431       22348999999999999         46689999999998    999999999988443556778889


Q ss_pred             HHHHhhcCCeEEEEecCCCCCCCC--CcCCCCCceEEEccccCCcceeeeEEeCCCeEEEEEEeeeccCCCCceeeEEEc
Q 038474          246 GAFHAMTKGILTVNSAGNNGPKAG--FTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYG  323 (667)
Q Consensus       246 a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~s~~~~~~~~~~~~lv~~  323 (667)
                      ++.++.++|++||+||||+|....  ..+...+++|+|||.+.+..                                  
T Consensus       130 ~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~----------------------------------  175 (264)
T cd07487         130 AVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP----------------------------------  175 (264)
T ss_pred             HHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC----------------------------------
Confidence            999999999999999999998765  55667899999998653210                                  


Q ss_pred             cCCCCCCCCCccccccccccEEEEeechhhHHHHhcCceEEEEecCCCCCcccccccceEEeChhhHHHHHHhhhhchhh
Q 038474          324 KGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMN  403 (667)
Q Consensus       324 ~~~~~~~~C~~~~~~~~~gkIvl~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~~~~~~~~~  403 (667)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (264)
T cd07487         176 --------------------------------------------------------------------------------  175 (264)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhcccCCCCceEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceeeCCccEEeeeCCCCCCCCCcCCccceeeEEE
Q 038474          404 FLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNII  483 (667)
Q Consensus       404 ~~~~~~~~~~~~~i~~~t~~~~~~~~~~a~FSSrGPt~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~  483 (667)
                                             ....++.||++||+.  ++++||||+|||.+|+++.+.....    .......|..+
T Consensus       176 -----------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~----~~~~~~~~~~~  226 (264)
T cd07487         176 -----------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNP----GAGVGSGYFEM  226 (264)
T ss_pred             -----------------------CCccccccccCCCCC--CCCcCCCEEccccceEecccccccc----CCCCCCceEec
Confidence                                   002357899999998  8999999999999999987653111    11223579999


Q ss_pred             cccCCchhhhh
Q 038474          484 SGTSMACPHAA  494 (667)
Q Consensus       484 SGTSMAaPhVA  494 (667)
                      +|||||||+||
T Consensus       227 ~GTS~Aap~va  237 (264)
T cd07487         227 SGTSMATPHVS  237 (264)
T ss_pred             cccchHHHHHH
Confidence            99999999999

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7

Probab=100.00  E-value=1.2e-35  Score=304.04  Aligned_cols=145  Identities=22%  Similarity=0.312  Sum_probs=111.4

Q ss_pred             CCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCC----CCCCCCCCCCCCcchhhh
Q 038474           99 ESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRD----DGNGSAIDEEGHGSNTAS  174 (667)
Q Consensus        99 G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~----~~~~~~~D~~gHGThVAg  174 (667)
                      +++|+|||||||||++||+|.+.                        ++..+.|....    .......|..||||||||
T Consensus         2 ~~~V~VaVIDsGvd~~hpdl~~~------------------------i~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAg   57 (247)
T cd07491           2 LKRIKVALIDDGVDILDSDLQGK------------------------IIGGKSFSPYEGDGNKVSPYYVSADGHGTAMAR   57 (247)
T ss_pred             CCCCEEEEECCCcCCCchhhccc------------------------cccCCCCCCCCCCcccCCCCCCCCCCcHHHHHH
Confidence            78999999999999999999742                        11122222110    001123468899999999


Q ss_pred             hhccccCCCCccccccccceeecccCcEEEEEe-----c----------hhHHHHHHHHHHCCCcEEEeCcCCCCCC--C
Q 038474          175 TAAGNKVKDASFLGIGQGMARGGVPSARISAYR-----G----------EKILAAFDDAIADGVDIITISLGDTSAV--D  237 (667)
Q Consensus       175 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-----~----------~~i~~a~~~a~~~g~dVin~SlG~~~~~--~  237 (667)
                      ||+                  |+||+|+|+.+|     .          ..+++||+||+++|+||||||||.....  .
T Consensus        58 iI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~  119 (247)
T cd07491          58 MIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDND  119 (247)
T ss_pred             HHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccc
Confidence            995                  689999999999     1          2589999999999999999999987211  1


Q ss_pred             ChhhHHHHHHHHhhcCCeEEEEecCCCCCCCC-Cc--CCCCCceEEEcccc
Q 038474          238 LAHDVIAIGAFHAMTKGILTVNSAGNNGPKAG-FT--SSIAPWLMSVAAST  285 (667)
Q Consensus       238 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~--~~~~p~vitVgA~~  285 (667)
                      .....+..++.+|.++|++||+||||+|.... .+  +...|++|+|||++
T Consensus       120 ~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~  170 (247)
T cd07491         120 NDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD  170 (247)
T ss_pred             cchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence            13567888899999999999999999998654 33  45678999999865

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin

Probab=100.00  E-value=3.3e-35  Score=306.19  Aligned_cols=176  Identities=23%  Similarity=0.242  Sum_probs=128.2

Q ss_pred             hhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCC-CCCCCCCCCCCCCc
Q 038474           91 SITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR-DDGNGSAIDEEGHG  169 (667)
Q Consensus        91 ~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~-~~~~~~~~D~~gHG  169 (667)
                      ++|..+++|+||+|||||||||++||+|.+......   +        .     .....+.+..+ ........|..|||
T Consensus         1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~---~--------~-----~~~~~~~~~~~~~~~~~~~~~~~gHG   64 (273)
T cd07485           1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDG---Y--------D-----PAVNGYNFVPNVGDIDNDVSVGGGHG   64 (273)
T ss_pred             CccccccCCCCcEEEEEeCCCCCCChhhccCCCCCC---c--------c-----cccCCcccccccCCcCCCCCCCCCCH
Confidence            479999999999999999999999999986511110   0        0     00000011000 01123455678999


Q ss_pred             chhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChh
Q 038474          170 SNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSAVDLAH  240 (667)
Q Consensus       170 ThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~  240 (667)
                      |||||||+|...+.....|++  .+.|+||+|+|+.+|         ..+++++|+++++.|++|||||||... ...+.
T Consensus        65 T~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~-~~~~~  141 (273)
T cd07485          65 THVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTG-GGIYS  141 (273)
T ss_pred             HHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCC-ccccC
Confidence            999999999764332222222  236799999999999         456899999999999999999999872 22344


Q ss_pred             hHHHHHHHHhhcC-------CeEEEEecCCCCCCCCCcCCCCCceEEEcccc
Q 038474          241 DVIAIGAFHAMTK-------GILTVNSAGNNGPKAGFTSSIAPWLMSVAAST  285 (667)
Q Consensus       241 ~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~  285 (667)
                      ..+..++..+.++       |++||+||||+|.....+++..|++|+||+++
T Consensus       142 ~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~  193 (273)
T cd07485         142 PLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALD  193 (273)
T ss_pred             HHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEecc
Confidence            5667777777777       99999999999988777788889999998854

Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev

>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4

Probab=100.00  E-value=1.3e-35  Score=302.95  Aligned_cols=139  Identities=28%  Similarity=0.421  Sum_probs=110.9

Q ss_pred             cEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhccccC
Q 038474          102 LIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKV  181 (667)
Q Consensus       102 v~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~~  181 (667)
                      |+|||||||||.+||+|.+.                        ++..+++.     .....|..+|||||||||+|...
T Consensus         1 V~VavIDsGvd~~hp~l~~~------------------------~~~~~~~~-----~~~~~~~~~HGT~vAgiia~~~~   51 (239)
T cd05561           1 VRVGMIDTGIDTAHPALSAV------------------------VIARLFFA-----GPGAPAPSAHGTAVASLLAGAGA   51 (239)
T ss_pred             CEEEEEeCCCCCCCcccccC------------------------ccccccCC-----CCCCCCCCCCHHHHHHHHhCCCC
Confidence            78999999999999999742                        11111111     11356788999999999999752


Q ss_pred             CCCccccccccceeecccCcEEEEEe------------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhhHHHHHHHH
Q 038474          182 KDASFLGIGQGMARGGVPSARISAYR------------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFH  249 (667)
Q Consensus       182 ~~~~~~G~~~g~~~GvAP~A~l~~~k------------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~a~~~  249 (667)
                      .          . .|+||+|+|+.+|            ..++++||+||++.|++|||||||+.     ....++.++.+
T Consensus        52 ~----------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~-----~~~~l~~ai~~  115 (239)
T cd05561          52 Q----------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGP-----PNALLAAAVAA  115 (239)
T ss_pred             C----------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC-----CCHHHHHHHHH
Confidence            1          1 6999999999998            24589999999999999999999975     23567788889


Q ss_pred             hhcCCeEEEEecCCCCCCC-CCcCCCCCceEEEcccc
Q 038474          250 AMTKGILTVNSAGNNGPKA-GFTSSIAPWLMSVAAST  285 (667)
Q Consensus       250 a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~  285 (667)
                      +.++|++||+||||+|+.. ..+|+..|++|+|+|++
T Consensus       116 a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~  152 (239)
T cd05561         116 AAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVD  152 (239)
T ss_pred             HHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeec
Confidence            9999999999999999753 46777889999998754

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases

Probab=100.00  E-value=9.2e-35  Score=305.67  Aligned_cols=242  Identities=30%  Similarity=0.335  Sum_probs=171.3

Q ss_pred             cCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhh
Q 038474           95 RRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTAS  174 (667)
Q Consensus        95 ~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAg  174 (667)
                      ++++|+||+|||||||||++||+|.+...            .+.+ ..++++.....+..      ...|..+|||||||
T Consensus         2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~-~~~~~~~~~~~~~~------~~~d~~~HGT~vAg   62 (293)
T cd04842           2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN-LFHRKIVRYDSLSD------TKDDVDGHGTHVAG   62 (293)
T ss_pred             CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc-cCcccEEEeeccCC------CCCCCCCCcchhhe
Confidence            57899999999999999999999975422            0111 13445554444422      22278999999999


Q ss_pred             hhccccCCCCccccccccceeecccCcEEEEEe----------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhhHHH
Q 038474          175 TAAGNKVKDASFLGIGQGMARGGVPSARISAYR----------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIA  244 (667)
Q Consensus       175 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k----------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~  244 (667)
                      ||+|...+....     ..+.|+||+|+|+.+|          ..++..+++++.+.+++|||||||......+  ....
T Consensus        63 iia~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~~~--~~~~  135 (293)
T cd04842          63 IIAGKGNDSSSI-----SLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNGY--TLLA  135 (293)
T ss_pred             eeccCCcCCCcc-----cccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCcccc--chHH
Confidence            999986443211     1238999999999999          1238899999999999999999998732112  2233


Q ss_pred             HHHHHhh-c-CCeEEEEecCCCCCCCC---CcCCCCCceEEEccccCCcceeeeEEeCCCeEEEEEEeeeccCCCCceee
Q 038474          245 IGAFHAM-T-KGILTVNSAGNNGPKAG---FTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKGKMFP  319 (667)
Q Consensus       245 ~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~s~~~~~~~~~~~~  319 (667)
                      .++.++. + +|++||+||||+|....   ..+...+++|+|||++.+....            .   .           
T Consensus       136 ~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~------------~---~-----------  189 (293)
T cd04842         136 RAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN------------G---E-----------  189 (293)
T ss_pred             HHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc------------c---c-----------
Confidence            3333332 3 89999999999997664   5677889999999976442100            0   0           


Q ss_pred             EEEccCCCCCCCCCccccccccccEEEEeechhhHHHHhcCceEEEEecCCCCCcccccccceEEeChhhHHHHHHhhhh
Q 038474          320 LLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQ  399 (667)
Q Consensus       320 lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~~~~~  399 (667)
                                 .|.                                                                  
T Consensus       190 -----------~~~------------------------------------------------------------------  192 (293)
T cd04842         190 -----------GGL------------------------------------------------------------------  192 (293)
T ss_pred             -----------ccc------------------------------------------------------------------
Confidence                       000                                                                  


Q ss_pred             chhhhhcccCCCCceEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceeeCCccEEeeeCCCCCCCCCcCCcccee
Q 038474          400 VIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVK  479 (667)
Q Consensus       400 ~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~a~FSSrGPt~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~  479 (667)
                          +.                   ......++.||++||+.  ++++||||+|||++|+++++....    ........
T Consensus       193 ----~~-------------------~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~~----~~~~~~~~  243 (293)
T cd04842         193 ----GQ-------------------SDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGG----IGDTSDSA  243 (293)
T ss_pred             ----cc-------------------cCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCCC----CCCCChhh
Confidence                00                   01125678999999998  899999999999999999755310    01112347


Q ss_pred             eEEEcccCCchhhhh
Q 038474          480 YNIISGTSMACPHAA  494 (667)
Q Consensus       480 y~~~SGTSMAaPhVA  494 (667)
                      |...+||||||||||
T Consensus       244 ~~~~~GTS~AaP~Va  258 (293)
T cd04842         244 YTSKSGTSMATPLVA  258 (293)
T ss_pred             eeecCcHHHHHHHHH
Confidence            999999999999999

Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases

>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins

Probab=100.00  E-value=1.1e-33  Score=292.48  Aligned_cols=163  Identities=25%  Similarity=0.336  Sum_probs=131.3

Q ss_pred             ccccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCC
Q 038474           83 WDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSA  162 (667)
Q Consensus        83 ~~~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~  162 (667)
                      +..++++ .+|..+ +|+||+|||||+||+++||+|...                       ++...+.+..+   ...+
T Consensus        13 ~~~~~~~-~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~-----------------------~~~~~~~~~~~---~~~~   64 (260)
T cd07484          13 LDQIGAP-KAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV-----------------------KFVLGYDFVDN---DSDA   64 (260)
T ss_pred             ccccChH-HHHhhc-CCCCCEEEEEeCCCCCCCcccccC-----------------------CcccceeccCC---CCCC
Confidence            3456777 899998 999999999999999999998421                       22233333221   2336


Q ss_pred             CCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCC
Q 038474          163 IDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDT  233 (667)
Q Consensus       163 ~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~  233 (667)
                      .|..+|||||||||++...+..   +     +.|+||+|+|+.+|         ..+++++++++++.|++|||||||..
T Consensus        65 ~d~~~HGT~vagii~~~~~~~~---~-----~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~  136 (260)
T cd07484          65 MDDNGHGTHVAGIIAAATNNGT---G-----VAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGG  136 (260)
T ss_pred             CCCCCcHHHHHHHHhCccCCCC---c-----eEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCC
Confidence            6788999999999998753211   2     38999999999998         45688999999999999999999987


Q ss_pred             CCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEcccc
Q 038474          234 SAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAAST  285 (667)
Q Consensus       234 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~  285 (667)
                      .    ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+
T Consensus       137 ~----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~  184 (260)
T cd07484         137 L----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATD  184 (260)
T ss_pred             C----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeC
Confidence            2    34567778888889999999999999998888999999999998854

Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid

>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins

Probab=100.00  E-value=2.6e-34  Score=302.16  Aligned_cols=150  Identities=26%  Similarity=0.270  Sum_probs=107.1

Q ss_pred             EEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhccccCC
Q 038474          103 IVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKVK  182 (667)
Q Consensus       103 ~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~~~  182 (667)
                      +|||||||||.+||+|.+.                        +.....+...   ...+.|..||||||||||++....
T Consensus         2 ~VaviDtGi~~~hp~l~~~------------------------~~~~~~~~~~---~~~~~d~~gHGT~vAgiia~~~~~   54 (291)
T cd04847           2 IVCVLDSGINRGHPLLAPA------------------------LAEDDLDSDE---PGWTADDLGHGTAVAGLALYGDLT   54 (291)
T ss_pred             EEEEecCCCCCCChhhhhh------------------------hccccccccC---CCCcCCCCCChHHHHHHHHcCccc
Confidence            7999999999999999742                        1111111110   011578999999999999976432


Q ss_pred             CCccccccccceeecccCcEEEEEe-------------chhHHHHHHHHHHCC---CcEEEeCcCCCCCCCCh-hhHHHH
Q 038474          183 DASFLGIGQGMARGGVPSARISAYR-------------GEKILAAFDDAIADG---VDIITISLGDTSAVDLA-HDVIAI  245 (667)
Q Consensus       183 ~~~~~G~~~g~~~GvAP~A~l~~~k-------------~~~i~~a~~~a~~~g---~dVin~SlG~~~~~~~~-~~~~~~  245 (667)
                      .        ....|+||+++|+.+|             ..+++++|+|+++.+   ++|||||||........ ...+..
T Consensus        55 ~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~~  126 (291)
T cd04847          55 L--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWAA  126 (291)
T ss_pred             C--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHHH
Confidence            1        1237999999999999             234789999999853   49999999987322111 124555


Q ss_pred             HHHH-hhcCCeEEEEecCCCCCCCCC------------cCCCCCceEEEccccCC
Q 038474          246 GAFH-AMTKGILTVNSAGNNGPKAGF------------TSSIAPWLMSVAASTTD  287 (667)
Q Consensus       246 a~~~-a~~~Gi~vV~AAGN~G~~~~~------------~~~~~p~vitVgA~~~d  287 (667)
                      ++.+ +.++|++||+||||+|.....            .|..++++|+|||++.+
T Consensus       127 ~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~  181 (291)
T cd04847         127 ALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSD  181 (291)
T ss_pred             HHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecC
Confidence            5544 568999999999999986543            24567899999997744

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10

Probab=100.00  E-value=1.1e-33  Score=297.40  Aligned_cols=155  Identities=24%  Similarity=0.319  Sum_probs=121.1

Q ss_pred             cccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCC
Q 038474           84 DFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAI  163 (667)
Q Consensus        84 ~~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~  163 (667)
                      +.++++ .+|+.+++|+||+||||||||+..|| |...++.       +            +.    .+..+  ......
T Consensus         6 ~~l~~~-~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~------------~~----~~~~~--~~~~~~   58 (298)
T cd07494           6 ALLNAT-RVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V------------RV----VLAPG--ATDPAC   58 (298)
T ss_pred             hhcChh-HHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c------------ee----ecCCC--CCCCCC
Confidence            456777 99999999999999999999999998 7533211       0            00    01000  123456


Q ss_pred             CCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe-----chhHHHHHHHHHHCCCcEEEeCcCCCCCCC-
Q 038474          164 DEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-----GEKILAAFDDAIADGVDIITISLGDTSAVD-  237 (667)
Q Consensus       164 D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-----~~~i~~a~~~a~~~g~dVin~SlG~~~~~~-  237 (667)
                      |+.|||||||+++                  .||||+|+|+.+|     ..+++++|+||+++|++|||||||...... 
T Consensus        59 D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~  120 (298)
T cd07494          59 DENGHGTGESANL------------------FAIAPGAQFIGVKLGGPDLVNSVGAFKKAISLSPDIISNSWGYDLRSPG  120 (298)
T ss_pred             CCCCcchheeece------------------eEeCCCCeEEEEEccCCCcHHHHHHHHHHHhcCCCEEEeecccCCCCcc
Confidence            7889999998753                  5899999999999     457899999999999999999999863211 


Q ss_pred             --------ChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEccccC
Q 038474          238 --------LAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTT  286 (667)
Q Consensus       238 --------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~  286 (667)
                              .....+..++.+|.++|++||+||||++.   .+|+..|++|+|||++.
T Consensus       121 ~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~  174 (298)
T cd07494         121 TSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFV  174 (298)
T ss_pred             cccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEec
Confidence                    12345788888899999999999999975   57889999999999753

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12

Probab=100.00  E-value=1.2e-33  Score=297.86  Aligned_cols=138  Identities=28%  Similarity=0.356  Sum_probs=102.6

Q ss_pred             ccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhh
Q 038474           94 QRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTA  173 (667)
Q Consensus        94 ~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVA  173 (667)
                      +.+++|+||+|||||||||.+||+|.+..                        +....|..    ...+.|..|||||||
T Consensus         2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~------------------------~~~~~~~~----~~~~~d~~gHGT~VA   53 (297)
T cd07480           2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD------------------------ITTKSFVG----GEDVQDGHGHGTHCA   53 (297)
T ss_pred             CCCCCCCCCEEEEEcCCCCCCChhhcCCc------------------------ccCcccCC----CCCCCCCCCcHHHHH
Confidence            35789999999999999999999997531                        11122221    122567899999999


Q ss_pred             hhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCC---------
Q 038474          174 STAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSA---------  235 (667)
Q Consensus       174 giiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~---------  235 (667)
                      |||+|+..+         +...||||+|+|+.+|         ..+++++++||++.|++|||||||....         
T Consensus        54 giiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~  124 (297)
T cd07480          54 GTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPP  124 (297)
T ss_pred             HHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCC
Confidence            999998633         2236999999999998         4569999999999999999999998631         


Q ss_pred             CCChhhHHHHHHHHh---------------hcCCeEEEEecCCCCCCC
Q 038474          236 VDLAHDVIAIGAFHA---------------MTKGILTVNSAGNNGPKA  268 (667)
Q Consensus       236 ~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~  268 (667)
                      .......++.....+               .++|++||+||||+|...
T Consensus       125 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~  172 (297)
T cd07480         125 GLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRP  172 (297)
T ss_pred             CchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCC
Confidence            111122333333333               679999999999998654

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11

Probab=100.00  E-value=2e-33  Score=292.29  Aligned_cols=141  Identities=16%  Similarity=0.128  Sum_probs=106.5

Q ss_pred             cCCChhhhccC-CCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCC
Q 038474           86 MGFNESITQRR-TVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAID  164 (667)
Q Consensus        86 ig~~~~~w~~~-~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D  164 (667)
                      |+++ ++|+.. ..|+||+|+|||+|||.+||+|.+.....                        ..       ...+.|
T Consensus         2 i~~~-~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~------------------------~~-------~~~~~d   49 (277)
T cd04843           2 INAR-YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITL------------------------IS-------GLTDQA   49 (277)
T ss_pred             CChH-HHHHhcCCCCCcEEEEEecCCCCCCChhhccccccc------------------------cC-------CCCCCC
Confidence            3455 899884 45899999999999999999998531110                        00       012567


Q ss_pred             CCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---chhHHHHHHHHHH----CCCcEEEeCcCCCCCCC
Q 038474          165 EEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---GEKILAAFDDAIA----DGVDIITISLGDTSAVD  237 (667)
Q Consensus       165 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---~~~i~~a~~~a~~----~g~dVin~SlG~~~~~~  237 (667)
                      +.+|||||||||+|..    +-.|     ..||||+|+|+.+|   .++++++|.+|++    .++.+||||||......
T Consensus        50 ~~gHGT~VAGiIaa~~----n~~G-----~~GvAp~a~l~~i~v~~~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~~~  120 (277)
T cd04843          50 DSDHGTAVLGIIVAKD----NGIG-----VTGIAHGAQAAVVSSTRVSNTADAILDAADYLSPGDVILLEMQTGGPNNGY  120 (277)
T ss_pred             CCCCcchhheeeeeec----CCCc-----eeeeccCCEEEEEEecCCCCHHHHHHHHHhccCCCCEEEEEccccCCCcCc
Confidence            8899999999999963    1123     28999999999999   3678999999988    34678999999862211


Q ss_pred             -----ChhhHHHHHHHHhhcCCeEEEEecCCCCCC
Q 038474          238 -----LAHDVIAIGAFHAMTKGILTVNSAGNNGPK  267 (667)
Q Consensus       238 -----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~  267 (667)
                           .....+..++.+|.++|++||+||||++..
T Consensus       121 ~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~  155 (277)
T cd04843         121 PPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQD  155 (277)
T ss_pred             ccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCcc
Confidence                 123455667888889999999999999865

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6

Probab=100.00  E-value=2.6e-33  Score=288.63  Aligned_cols=150  Identities=24%  Similarity=0.307  Sum_probs=115.8

Q ss_pred             CcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCC-CCCCCCCCCCCCCcchhhhhhccc
Q 038474          101 DLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR-DDGNGSAIDEEGHGSNTASTAAGN  179 (667)
Q Consensus       101 gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~-~~~~~~~~D~~gHGThVAgiiag~  179 (667)
                      ||+|||||||||++||+|.+.                        +...+.|..+ ........|..+|||||||||+|.
T Consensus         1 GV~VaviDsGv~~~hp~l~~~------------------------~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~   56 (254)
T cd07490           1 GVTVAVLDTGVDADHPDLAGR------------------------VAQWADFDENRRISATEVFDAGGHGTHVSGTIGGG   56 (254)
T ss_pred             CCEEEEEeCCCCCCCcchhcc------------------------cCCceeccCCCCCCCCCCCCCCCcHHHHHHHHhcC
Confidence            799999999999999999753                        1111122111 112334567889999999999998


Q ss_pred             cCCCCccccccccceeecccCcEEEEEe--------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhhHHHHHHHHhh
Q 038474          180 KVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAM  251 (667)
Q Consensus       180 ~~~~~~~~G~~~g~~~GvAP~A~l~~~k--------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~a~~~a~  251 (667)
                      ..         .+...||||+|+|+.+|        ..+++++|+|+++.+++|||||||.....   .+++..++....
T Consensus        57 ~~---------~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~---~~~~~~~~~~~~  124 (254)
T cd07490          57 GA---------KGVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS---EDPLEEAVEALS  124 (254)
T ss_pred             CC---------CCCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---CcHHHHHHHHHH
Confidence            63         12347999999999999        46789999999999999999999987321   455665555555


Q ss_pred             c-CCeEEEEecCCCCCCCCCcCCCCCceEEEccccC
Q 038474          252 T-KGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTT  286 (667)
Q Consensus       252 ~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~  286 (667)
                      + +|++||+||||+|.....++...+++|+|||++.
T Consensus       125 ~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~  160 (254)
T cd07490         125 NQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDR  160 (254)
T ss_pred             HcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccc
Confidence            4 6999999999999887778888999999999764

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13

Probab=100.00  E-value=7.6e-33  Score=290.20  Aligned_cols=162  Identities=22%  Similarity=0.268  Sum_probs=115.9

Q ss_pred             CcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCc-----------eeEeeeec-cC-----CCCCCCCCC
Q 038474          101 DLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNN-----------KIIGARYY-SF-----RDDGNGSAI  163 (667)
Q Consensus       101 gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~-----------kiig~~~~-~~-----~~~~~~~~~  163 (667)
                      ||+|||||||||++||+|.+.-..            |.+|..+.           +...-.+| .+     .........
T Consensus         1 gV~VaviDtGi~~~Hp~l~~~~~~------------g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   68 (285)
T cd07496           1 GVVVAVLDTGVLFHHPDLAGVLLP------------GYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVS   68 (285)
T ss_pred             CCEEEEecCCCCCCCcchhhcccc------------CcccccCcccccCCCCCCCCCCCcccccccccccccccccCCCC
Confidence            799999999999999999864211            11110000           00000000 00     011123345


Q ss_pred             CCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe--------chhHHHHHHHHH----------HCCCcE
Q 038474          164 DEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAI----------ADGVDI  225 (667)
Q Consensus       164 D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k--------~~~i~~a~~~a~----------~~g~dV  225 (667)
                      |..+|||||||||+|...++   .|+     .||||+|+|+.+|        .+++++|++|++          .++++|
T Consensus        69 ~~~~HGT~vAgiiaa~~~~~---~~~-----~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~I  140 (285)
T cd07496          69 PSSWHGTHVAGTIAAVTNNG---VGV-----AGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKV  140 (285)
T ss_pred             CCCCCHHHHHHHHhCcCCCC---CCc-----eeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeE
Confidence            67899999999999986422   222     8999999999999        467999999998          467899


Q ss_pred             EEeCcCCCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCC-CCcCCCCCceEEEcccc
Q 038474          226 ITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKA-GFTSSIAPWLMSVAAST  285 (667)
Q Consensus       226 in~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~  285 (667)
                      ||||||....   ....+..++..+.++|++||+||||+|... ..++...+++|+|||++
T Consensus       141 in~S~G~~~~---~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~  198 (285)
T cd07496         141 INLSLGGDGA---CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATD  198 (285)
T ss_pred             EEeCCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccC
Confidence            9999998721   145677888899999999999999999875 56778889999998854

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins

Probab=100.00  E-value=9.2e-33  Score=284.90  Aligned_cols=147  Identities=24%  Similarity=0.327  Sum_probs=120.1

Q ss_pred             hhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcch
Q 038474           92 ITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSN  171 (667)
Q Consensus        92 ~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGTh  171 (667)
                      .|..+++|+||+|||||+||+.+||+|.+.                        +...+.|..+    ....|..+||||
T Consensus        17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~------------------------~~~~~~~~~~----~~~~d~~~HGT~   68 (255)
T cd04077          17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR------------------------AIWGADFVGG----DPDSDCNGHGTH   68 (255)
T ss_pred             eEecCCCCCCcEEEEEcCCCCCCChhhhCC------------------------eeeeeecCCC----CCCCCCCccHHH
Confidence            677789999999999999999999999742                        2222333211    125678899999


Q ss_pred             hhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHC-----CCcEEEeCcCCCCCCC
Q 038474          172 TASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIAD-----GVDIITISLGDTSAVD  237 (667)
Q Consensus       172 VAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~-----g~dVin~SlG~~~~~~  237 (667)
                      |||||++..              .||||+|+|+.+|         .++++++++++++.     +++|||||||...   
T Consensus        69 vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~---  131 (255)
T cd04077          69 VAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA---  131 (255)
T ss_pred             HHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC---
Confidence            999999863              6999999999999         36789999999987     4899999999872   


Q ss_pred             ChhhHHHHHHHHhhcCCeEEEEecCCCCCCC-CCcCCCCCceEEEcccc
Q 038474          238 LAHDVIAIGAFHAMTKGILTVNSAGNNGPKA-GFTSSIAPWLMSVAAST  285 (667)
Q Consensus       238 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~  285 (667)
                        ...+..++..+.++|+++|+||||+|... ...+...|++|+|||.+
T Consensus       132 --~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~  178 (255)
T cd04077         132 --STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATD  178 (255)
T ss_pred             --CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccC
Confidence              45677788889999999999999999765 45677889999998864

The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti

>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15

Probab=100.00  E-value=8.4e-33  Score=282.85  Aligned_cols=151  Identities=26%  Similarity=0.334  Sum_probs=118.1

Q ss_pred             cEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhccccC
Q 038474          102 LIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKV  181 (667)
Q Consensus       102 v~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~~  181 (667)
                      |+|||||+||+++||+|.+.                      .+++..+.+..+   ...+.|..+|||||||||+|+..
T Consensus         1 V~VaviDsGi~~~hp~l~~~----------------------~~~~~~~~~~~~---~~~~~~~~~HGT~vAgiiag~~~   55 (242)
T cd07498           1 VVVAIIDTGVDLNHPDLSGK----------------------PKLVPGWNFVSN---NDPTSDIDGHGTACAGVAAAVGN   55 (242)
T ss_pred             CEEEEecCCCCCCChhhccC----------------------cCccCCccccCC---CCCCCCCCCCHHHHHHHHHhccC
Confidence            78999999999999999852                      001111111111   12456789999999999999753


Q ss_pred             CCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhhHHHHHHHHhhc
Q 038474          182 KDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMT  252 (667)
Q Consensus       182 ~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~a~~~a~~  252 (667)
                      +.        ..+.|+||+|+|+.+|         ..++.++++++++.+++|||||||...........+..++..+.+
T Consensus        56 ~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~  127 (242)
T cd07498          56 NG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRN  127 (242)
T ss_pred             CC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhh
Confidence            21        1238999999999999         456889999999999999999999874434456778888888888


Q ss_pred             -CCeEEEEecCCCCCCCCCcCCCCCceEEEcccc
Q 038474          253 -KGILTVNSAGNNGPKAGFTSSIAPWLMSVAAST  285 (667)
Q Consensus       253 -~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~  285 (667)
                       +|++||+||||+|......++..+++|+|||.+
T Consensus       128 ~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~  161 (242)
T cd07498         128 GKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATD  161 (242)
T ss_pred             cCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeC
Confidence             999999999999987767788899999999864

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins

Probab=99.98  E-value=5.1e-32  Score=274.49  Aligned_cols=146  Identities=31%  Similarity=0.394  Sum_probs=115.1

Q ss_pred             CcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhcccc
Q 038474          101 DLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNK  180 (667)
Q Consensus       101 gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~  180 (667)
                      ||+|||||+||+.+||+|.+.                        ++..+.|..+.  .....|..+|||||||+|++..
T Consensus         1 gv~V~iiDsGv~~~h~~l~~~------------------------~~~~~~~~~~~--~~~~~~~~~HGT~vA~ii~~~~   54 (229)
T cd07477           1 GVKVAVIDTGIDSSHPDLKLN------------------------IVGGANFTGDD--NNDYQDGNGHGTHVAGIIAALD   54 (229)
T ss_pred             CCEEEEEcCCCCCCChhHhcc------------------------ccCcccccCCC--CCCCCCCCCCHHHHHHHHhccc
Confidence            799999999999999999743                        11222222110  0345678899999999999975


Q ss_pred             CCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhhHHHHHHHHhh
Q 038474          181 VKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAM  251 (667)
Q Consensus       181 ~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~a~~~a~  251 (667)
                      ...         .+.|+||+|+|+.+|         ..+++++++++++.|++|||||||...    ....+..++..+.
T Consensus        55 ~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~----~~~~~~~~~~~a~  121 (229)
T cd07477          55 NGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS----DSPALREAIKKAY  121 (229)
T ss_pred             CCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC----CCHHHHHHHHHHH
Confidence            321         238999999999999         357899999999999999999999872    2345667777888


Q ss_pred             cCCeEEEEecCCCCCCCCCc--CCCCCceEEEcccc
Q 038474          252 TKGILTVNSAGNNGPKAGFT--SSIAPWLMSVAAST  285 (667)
Q Consensus       252 ~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~  285 (667)
                      ++|+++|+||||+|......  ++..+++|+||+++
T Consensus       122 ~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~  157 (229)
T cd07477         122 AAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVD  157 (229)
T ss_pred             HCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeec
Confidence            99999999999999876654  88889999998864

This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug

>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification

Probab=99.98  E-value=1.2e-32  Score=287.46  Aligned_cols=158  Identities=32%  Similarity=0.483  Sum_probs=114.7

Q ss_pred             EEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhccccCC
Q 038474          103 IVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKVK  182 (667)
Q Consensus       103 ~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~~~  182 (667)
                      +|||||||||++||+|....+                  ...++.+.+.|..+........|..+|||||||+|+|.. .
T Consensus         1 ~V~viDtGid~~h~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~va~ii~~~~-~   61 (282)
T PF00082_consen    1 KVAVIDTGIDPNHPDFSSGNF------------------IWSKVPGGYNFVDGNPNPSPSDDDNGHGTHVAGIIAGNG-G   61 (282)
T ss_dssp             EEEEEESBBTTTSTTTTCTTE------------------EEEEEEEEEETTTTBSTTTSSSTSSSHHHHHHHHHHHTT-S
T ss_pred             CEEEEcCCcCCCChhHccCCc------------------ccccccceeeccCCCCCcCccccCCCccchhhhhccccc-c
Confidence            699999999999999972111                  112334455555432234556778999999999999986 2


Q ss_pred             CCccccccccceeecccCcEEEEEe--------chhHHHHHHHHH-HCCCcEEEeCcCC--CCCCCChhhHHHHHHHHhh
Q 038474          183 DASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAI-ADGVDIITISLGD--TSAVDLAHDVIAIGAFHAM  251 (667)
Q Consensus       183 ~~~~~G~~~g~~~GvAP~A~l~~~k--------~~~i~~a~~~a~-~~g~dVin~SlG~--~~~~~~~~~~~~~a~~~a~  251 (667)
                       .+..+     ..|+||+|+|+.+|        ..++++++++++ +.+++|||||||.  ..........+..++..+.
T Consensus        62 -~~~~~-----~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~  135 (282)
T PF00082_consen   62 -NNGPG-----INGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDYAE  135 (282)
T ss_dssp             -SSSSS-----ETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHHHH
T ss_pred             -ccccc-----cccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccccccccccccccccccc
Confidence             22212     38999999999999        446899999999 8999999999998  3112233445666777888


Q ss_pred             cCCeEEEEecCCCCCCCCC---cCCCCCceEEEcccc
Q 038474          252 TKGILTVNSAGNNGPKAGF---TSSIAPWLMSVAAST  285 (667)
Q Consensus       252 ~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgA~~  285 (667)
                      ++|+++|+||||+|.....   .+...+++|+||+.+
T Consensus       136 ~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~  172 (282)
T PF00082_consen  136 KKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVD  172 (282)
T ss_dssp             HTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEE
T ss_pred             ccCcceeeccccccccccccccccccccccccccccc
Confidence            9999999999999876543   555668889998753

; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....

>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins

Probab=99.98  E-value=1.1e-31  Score=277.41  Aligned_cols=164  Identities=24%  Similarity=0.322  Sum_probs=117.7

Q ss_pred             CCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccc---cccCCCCccCCceeE--eeeeccCCCCCCCCCCCCCCCcchhhh
Q 038474          100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKG---ACDGGKNFTCNNKII--GARYYSFRDDGNGSAIDEEGHGSNTAS  174 (667)
Q Consensus       100 ~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g---~~~~g~~f~~n~kii--g~~~~~~~~~~~~~~~D~~gHGThVAg  174 (667)
                      +||+|||||||||++||+|.+.       .|..   .+..+.+...+..+.  ..+.|.   ....++.|..+|||||||
T Consensus         2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~~HGT~va~   71 (259)
T cd07473           2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDDGNGYVDDIYGWNFV---NNDNDPMDDNGHGTHVAG   71 (259)
T ss_pred             CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccCCCCcccCCCccccc---CCCCCCCCCCCcHHHHHH
Confidence            6999999999999999999863       2321   111111111111111  011111   123456788999999999


Q ss_pred             hhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhhHHHH
Q 038474          175 TAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAI  245 (667)
Q Consensus       175 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~  245 (667)
                      ||+|...++.        .+.|+||+|+|+.+|         ..+++++++++++.+++|||+|||....    ...+..
T Consensus        72 ii~~~~~~~~--------~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~----~~~~~~  139 (259)
T cd07473          72 IIGAVGNNGI--------GIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP----SQALRD  139 (259)
T ss_pred             HHHCcCCCCC--------ceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC----CHHHHH
Confidence            9999864322        138999999999999         4568999999999999999999998722    567778


Q ss_pred             HHHHhhcCCeEEEEecCCCCCCC---CCcCC--CCCceEEEcccc
Q 038474          246 GAFHAMTKGILTVNSAGNNGPKA---GFTSS--IAPWLMSVAAST  285 (667)
Q Consensus       246 a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~~p~vitVgA~~  285 (667)
                      ++.++.++|++||+||||+|...   ..++.  ..+++|+||+.+
T Consensus       140 ~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~  184 (259)
T cd07473         140 AIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATD  184 (259)
T ss_pred             HHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecC
Confidence            88889999999999999998762   24444  347888887754

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.5e-31  Score=280.71  Aligned_cols=268  Identities=25%  Similarity=0.398  Sum_probs=205.0

Q ss_pred             HHHHHHcCCCeeEEEcCcccccCCC---------------------------------CCcc------------ccCCCh
Q 038474           56 EIQKLAGMKGVVSVFPSRTLQLHTT---------------------------------RSWD------------FMGFNE   90 (667)
Q Consensus        56 ~~~~L~~~p~V~~v~~~~~~~~~~~---------------------------------~s~~------------~ig~~~   90 (667)
                      ++++|..+|.|+.|.|.+.+.+-..                                 ..|.            .++++ 
T Consensus       113 ~ierLe~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad-  191 (1033)
T KOG4266|consen  113 EIERLEMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGAD-  191 (1033)
T ss_pred             eeeehhcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchh-
Confidence            5889999999999999877643110                                 0010            13344 


Q ss_pred             hhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcc
Q 038474           91 SITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGS  170 (667)
Q Consensus        91 ~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGT  170 (667)
                      -+|+.|++|++|+|||+|||+..+||.|+.-.-   ..+|.           |               .....|..||||
T Consensus       192 ~LWk~GyTGa~VkvAiFDTGl~~~HPHFrnvKE---RTNWT-----------N---------------E~tLdD~lgHGT  242 (1033)
T KOG4266|consen  192 HLWKKGYTGAKVKVAIFDTGLRADHPHFRNVKE---RTNWT-----------N---------------EDTLDDNLGHGT  242 (1033)
T ss_pred             hHHhccccCCceEEEEeecccccCCccccchhh---hcCCc-----------C---------------ccccccCcccce
Confidence            799999999999999999999999999973200   01121           1               234556789999


Q ss_pred             hhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhh
Q 038474          171 NTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHD  241 (667)
Q Consensus       171 hVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~  241 (667)
                      .|||+|||..            ...|.||+++|++++         ++..+.||.+|+....||+|+|.|++   ++.+.
T Consensus       243 FVAGvia~~~------------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP---DfmD~  307 (1033)
T KOG4266|consen  243 FVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP---DFMDL  307 (1033)
T ss_pred             eEeeeeccch------------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc---ccccc
Confidence            9999999874            237999999999999         77899999999999999999999997   57778


Q ss_pred             HHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCC--ceEEEccccCCcceeeeEEeCCCeEEEEEEeeeccCCCCceee
Q 038474          242 VIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAP--WLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKGKMFP  319 (667)
Q Consensus       242 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p--~vitVgA~~~d~~~~~~~~~~~~~~~~g~~s~~~~~~~~~~~~  319 (667)
                      |+-.-+......++++|.|+||+||-.+|..+++.  .||.||..                                   
T Consensus       308 PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI-----------------------------------  352 (1033)
T KOG4266|consen  308 PFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI-----------------------------------  352 (1033)
T ss_pred             hHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc-----------------------------------
Confidence            88777788888999999999999998888776653  33333321                                   


Q ss_pred             EEEccCCCCCCCCCccccccccccEEEEeechhhHHHHhcCceEEEEecCCCCCcccccccceEEeChhhHHHHHHhhhh
Q 038474          320 LLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQ  399 (667)
Q Consensus       320 lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~~~~~  399 (667)
                                                                                                      
T Consensus       353 --------------------------------------------------------------------------------  352 (1033)
T KOG4266|consen  353 --------------------------------------------------------------------------------  352 (1033)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhhcccCCCCceEEEeeeeeecCCCCCcccccCCCCCCC----CCCCCCCCceeeCCccEEeeeCCCCCCCCCcCCc
Q 038474          400 VIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNK----YVPDILKPDISAPGVNILAAYSPLAPISRDIEDE  475 (667)
Q Consensus       400 ~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~a~FSSrGPt~----~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~  475 (667)
                                                ...+.+|.|||||-+.    ...||+||||++-|.+|....-.           
T Consensus       353 --------------------------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~-----------  395 (1033)
T KOG4266|consen  353 --------------------------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS-----------  395 (1033)
T ss_pred             --------------------------cccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-----------
Confidence                                      1136889999999765    25899999999999998866443           


Q ss_pred             cceeeEEEcccCCchhhhhcC-----------------------CCcCCCC-C-CCcCcccccccCccCCCC
Q 038474          476 RHVKYNIISGTSMACPHAAAW-----------------------PMNSSKN-T-QAEFAYGSGHINPVKATN  522 (667)
Q Consensus       476 ~~~~y~~~SGTSMAaPhVAa~-----------------------~i~~~~~-~-~~~~~~GaG~in~~~A~~  522 (667)
                        .+...+||||.|+|.||+.                       +|..+.. + ...|.||+|++|..++++
T Consensus       396 --~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~NMfEQGaGkldLL~syq  465 (1033)
T KOG4266|consen  396 --TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGPNMFEQGAGKLDLLESYQ  465 (1033)
T ss_pred             --ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCCchhhccCcchhHHHHHH
Confidence              3577899999999999931                       1111122 3 367899999999988866

>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases

Probab=99.97  E-value=5.4e-31  Score=277.08  Aligned_cols=139  Identities=29%  Similarity=0.405  Sum_probs=98.8

Q ss_pred             CcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccC----CCCCCCCCCCCCCCcchhhhhh
Q 038474          101 DLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSF----RDDGNGSAIDEEGHGSNTASTA  176 (667)
Q Consensus       101 gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~----~~~~~~~~~D~~gHGThVAgii  176 (667)
                      .|+|||||||||++||+|.+.-...    .+.             +.....+..    .........|..||||||||+|
T Consensus         1 ~V~VaviDtGi~~~hp~l~~~~~~~----~~~-------------~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgii   63 (294)
T cd07482           1 KVTVAVIDSGIDPDHPDLKNSISSY----SKN-------------LVPKGGYDGKEAGETGDINDIVDKLGHGTAVAGQI   63 (294)
T ss_pred             CcEEEEEeCCCCCCChhHhhccccc----ccc-------------cccCCCcCCccccccCCCCcCCCCCCcHhHHHHHH
Confidence            3899999999999999998521100    000             000000000    0111234567899999999999


Q ss_pred             ccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCCCC-------Chh
Q 038474          177 AGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSAVD-------LAH  240 (667)
Q Consensus       177 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~-------~~~  240 (667)
                      +|...            ..||||+|+|+.+|         ..+++++|++|++.+++|||||||......       ...
T Consensus        64 a~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~  131 (294)
T cd07482          64 AANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEY  131 (294)
T ss_pred             hcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhh
Confidence            98642            15999999999999         446899999999999999999999752211       112


Q ss_pred             hHHHHHHHHhhcCCeEEEEecCCCCCCC
Q 038474          241 DVIAIGAFHAMTKGILTVNSAGNNGPKA  268 (667)
Q Consensus       241 ~~~~~a~~~a~~~Gi~vV~AAGN~G~~~  268 (667)
                      ..+..++..+.++|++||+||||+|...
T Consensus       132 ~~~~~~i~~a~~~g~lvv~AAGN~g~~~  159 (294)
T cd07482         132 NAYKKAINYAKSKGSIVVAAAGNDGLDV  159 (294)
T ss_pred             HHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence            4566777788899999999999999653

Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h

>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases

Probab=99.97  E-value=6.5e-31  Score=277.13  Aligned_cols=168  Identities=19%  Similarity=0.175  Sum_probs=111.0

Q ss_pred             ccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCC--
Q 038474           85 FMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSA--  162 (667)
Q Consensus        85 ~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~--  162 (667)
                      -+++. .+|+.+++|+||+|+|||||||++||+|.+.....                      ..+.|..... ...+  
T Consensus        25 ~~~~~-~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~~----------------------~~~~~~~~~~-~~~~~~   80 (297)
T cd04059          25 DLNVT-PAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPE----------------------ASYDFNDNDP-DPTPRY   80 (297)
T ss_pred             CcccH-HHHhCCCCCcceEEEEEeCCcccCCHhHhhccccc----------------------ccccccCCCC-CCCCcc
Confidence            35566 89999999999999999999999999997531110                      1112211100 1122  


Q ss_pred             CCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe-------chhHHHHHHHHHHCCCcEEEeCcCCCCC
Q 038474          163 IDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-------GEKILAAFDDAIADGVDIITISLGDTSA  235 (667)
Q Consensus       163 ~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-------~~~i~~a~~~a~~~g~dVin~SlG~~~~  235 (667)
                      .|..||||||||||+|......   |     ..||||+|+|+.+|       ......++.++. +.++|||||||....
T Consensus        81 ~~~~gHGT~vAgiiag~~~~~~---~-----~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~Vin~S~g~~~~  151 (297)
T cd04059          81 DDDNSHGTRCAGEIAAVGNNGI---C-----GVGVAPGAKLGGIRMLDGDVTDVVEAESLGLNP-DYIDIYSNSWGPDDD  151 (297)
T ss_pred             ccccccCcceeeEEEeecCCCc---c-----cccccccceEeEEEecCCccccHHHHHHHhccc-CCceEEECCCCCCCC
Confidence            2788999999999999853211   2     28999999999999       122344444443 356999999997632


Q ss_pred             CC---ChhhHHHHHHHHhhc-----CCeEEEEecCCCCCCCCC----cCCCCCceEEEcccc
Q 038474          236 VD---LAHDVIAIGAFHAMT-----KGILTVNSAGNNGPKAGF----TSSIAPWLMSVAAST  285 (667)
Q Consensus       236 ~~---~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVgA~~  285 (667)
                      ..   .....+..++.++..     +|++||+||||+|.....    .....|++|+|||++
T Consensus       152 ~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~  213 (297)
T cd04059         152 GKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVT  213 (297)
T ss_pred             CCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeC
Confidence            21   112233334444332     799999999999973221    223567889998754

Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.

>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8

Probab=99.97  E-value=1.1e-29  Score=256.50  Aligned_cols=142  Identities=20%  Similarity=0.247  Sum_probs=107.4

Q ss_pred             CcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhcccc
Q 038474          101 DLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNK  180 (667)
Q Consensus       101 gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~  180 (667)
                      ||+|||||||||++||+|.+.-..            +..+.+      . .+   ........|..||||||||||++. 
T Consensus         1 gV~VaViDsGi~~~h~~l~~~~~~------------~~~~~~------~-~~---~~~~~~~~d~~gHGT~vAgiia~~-   57 (222)
T cd07492           1 GVRVAVIDSGVDTDHPDLGNLALD------------GEVTID------L-EI---IVVSAEGGDKDGHGTACAGIIKKY-   57 (222)
T ss_pred             CCEEEEEeCCCCCCChhhhccccc------------cccccc------c-cc---ccCCCCCCCCCCcHHHHHHHHHcc-
Confidence            799999999999999999853111            000100      0 00   111344567899999999999853 


Q ss_pred             CCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhhHHHHHHHHhh
Q 038474          181 VKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAM  251 (667)
Q Consensus       181 ~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~a~~~a~  251 (667)
                                       +|+++|+.+|         ..++++|++|++++|++|||||||...  ......+..++.++.
T Consensus        58 -----------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~--~~~~~~~~~~~~~a~  118 (222)
T cd07492          58 -----------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPG--DRDFPLLKELLEYAY  118 (222)
T ss_pred             -----------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--CCcCHHHHHHHHHHH
Confidence                             4999999998         456899999999999999999999872  223356777888888


Q ss_pred             cCCeEEEEecCCCCCCCCCcCCCCCceEEEcccc
Q 038474          252 TKGILTVNSAGNNGPKAGFTSSIAPWLMSVAAST  285 (667)
Q Consensus       252 ~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~  285 (667)
                      ++|+++|+||||++... .+|+..+.+|+|++.+
T Consensus       119 ~~g~l~V~aagN~~~~~-~~Pa~~~~vi~V~~~~  151 (222)
T cd07492         119 KAGGIIVAAAPNNNDIG-TPPASFPNVIGVKSDT  151 (222)
T ss_pred             HCCCEEEEECCCCCCCC-CCCccCCceEEEEecC
Confidence            89999999999998754 3477788999998754

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases

Probab=99.96  E-value=6.7e-29  Score=256.80  Aligned_cols=155  Identities=30%  Similarity=0.364  Sum_probs=115.0

Q ss_pred             CCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCC-CCCCCCCCCCCCCcchhhhhh
Q 038474           98 VESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR-DDGNGSAIDEEGHGSNTASTA  176 (667)
Q Consensus        98 ~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~-~~~~~~~~D~~gHGThVAgii  176 (667)
                      +|+||+|+|||+||+.+||+|.+......                        .+... ........|..+|||||||+|
T Consensus         1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~HGT~vagii   56 (267)
T cd04848           1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS------------------------YYVAVNDAGYASNGDGDSHGTHVAGVI   56 (267)
T ss_pred             CCCceEEEEEeCCCCCCCccccCcccccc------------------------cccccccccCCCCCCCCChHHHHHHHH
Confidence            69999999999999999999985422110                        00000 000134556889999999999


Q ss_pred             ccccCCCCccccccccceeecccCcEEEEEe----------chhHHHHHHHHHHCCCcEEEeCcCCCCCCC---------
Q 038474          177 AGNKVKDASFLGIGQGMARGGVPSARISAYR----------GEKILAAFDDAIADGVDIITISLGDTSAVD---------  237 (667)
Q Consensus       177 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k----------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~---------  237 (667)
                      +|...+         ....|+||+|+|+.+|          ...+.++++++++.+++|||||||......         
T Consensus        57 ag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~  127 (267)
T cd04848          57 AAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGS  127 (267)
T ss_pred             hcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhh
Confidence            998633         2338999999999999          146788999999999999999999873221         


Q ss_pred             --ChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCc---------CCCCCceEEEcccc
Q 038474          238 --LAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFT---------SSIAPWLMSVAAST  285 (667)
Q Consensus       238 --~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---------~~~~p~vitVgA~~  285 (667)
                        .....+...+..+.++|+++|+||||++......         +...+++|+||+.+
T Consensus       128 ~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~  186 (267)
T cd04848         128 AATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVD  186 (267)
T ss_pred             ccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEec
Confidence              1445667777888899999999999998654332         23457888888765

Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.

>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2

Probab=99.95  E-value=3.6e-28  Score=248.32  Aligned_cols=110  Identities=20%  Similarity=0.238  Sum_probs=85.1

Q ss_pred             CCCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe-----chhHHHHHHHH--HHCCCcEEEeCcCCC
Q 038474          161 SAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-----GEKILAAFDDA--IADGVDIITISLGDT  233 (667)
Q Consensus       161 ~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-----~~~i~~a~~~a--~~~g~dVin~SlG~~  233 (667)
                      ...|.+||||||||||||.               .|++|+++|+..+     ...+.++++|+  .+.+++|||||||..
T Consensus        32 ~~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~~~~~~~~~i~~~~~~~~gv~VINmS~G~~   96 (247)
T cd07488          32 RNNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIKSNNGQWQECLEAQQNGNNVKIINHSYGEG   96 (247)
T ss_pred             CCCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCCCCCccHHHHHHHHHhcCCceEEEeCCccC
Confidence            3567899999999999987               3667999998755     35688888888  668999999999987


Q ss_pred             CCCC-----ChhhHHHHHHHHhhcC-CeEEEEecCCCCCCCC-----CcCCCCCceEEEcccc
Q 038474          234 SAVD-----LAHDVIAIGAFHAMTK-GILTVNSAGNNGPKAG-----FTSSIAPWLMSVAAST  285 (667)
Q Consensus       234 ~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-----~~~~~~p~vitVgA~~  285 (667)
                      ....     +..+.+..++..+.++ |+++|+||||+|....     ..+..++++|+|||++
T Consensus        97 ~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d  159 (247)
T cd07488          97 LKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTD  159 (247)
T ss_pred             CCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEec
Confidence            3332     1234566777777665 9999999999998532     2345678899999875

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.3e-27  Score=264.58  Aligned_cols=112  Identities=29%  Similarity=0.406  Sum_probs=86.6

Q ss_pred             CCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe-----------chhHHHHHHHHHHCCCcEEEeCcCCC
Q 038474          165 EEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-----------GEKILAAFDDAIADGVDIITISLGDT  233 (667)
Q Consensus       165 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-----------~~~i~~a~~~a~~~g~dVin~SlG~~  233 (667)
                      ..-|||||||||+|+.....        ...|+||+|+|+.++           ...+.+||..++++.+||||||||-.
T Consensus       309 Sg~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~  380 (1304)
T KOG1114|consen  309 SGPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED  380 (1304)
T ss_pred             CCCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence            35699999999999974432        237999999999999           44588999999999999999999987


Q ss_pred             CCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCC---CCceEEEccc
Q 038474          234 SAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSI---APWLMSVAAS  284 (667)
Q Consensus       234 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~---~p~vitVgA~  284 (667)
                      ...+.....++..-..+.+.|+++|+||||+||.-.|++++   ...+|.|||.
T Consensus       381 a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAY  434 (1304)
T KOG1114|consen  381 AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAY  434 (1304)
T ss_pred             CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeee
Confidence            43333334444443334478999999999999988777653   4577888773

>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families

Probab=99.91  E-value=6.4e-24  Score=214.63  Aligned_cols=152  Identities=30%  Similarity=0.458  Sum_probs=112.2

Q ss_pred             cEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhccccC
Q 038474          102 LIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKV  181 (667)
Q Consensus       102 v~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~~  181 (667)
                      |+|+|||+|++++||+|...         .....            ....+...........|..+||||||++|++...
T Consensus         1 v~VaiiD~G~~~~~~~~~~~---------~~~~~------------~~~~~~~~~~~~~~~~~~~~HGt~va~~i~~~~~   59 (241)
T cd00306           1 VTVAVIDTGVDPDHPDLDGL---------FGGGD------------GGNDDDDNENGPTDPDDGNGHGTHVAGIIAASAN   59 (241)
T ss_pred             CEEEEEeCCCCCCCcchhcc---------ccCcc------------cccccccCcCCCCCCCCCCCcHHHHHHHHhcCCC
Confidence            68999999999999987210         00000            0001110000112455788999999999999863


Q ss_pred             CCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHH-HCCCcEEEeCcCCCCCCCChhhHHHHHHHHhh
Q 038474          182 KDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAI-ADGVDIITISLGDTSAVDLAHDVIAIGAFHAM  251 (667)
Q Consensus       182 ~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~-~~g~dVin~SlG~~~~~~~~~~~~~~a~~~a~  251 (667)
                      ...         ..|+||+++|+.+|         ...+++++++++ +.+++|||||||.....  ....+...+..+.
T Consensus        60 ~~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~--~~~~~~~~~~~~~  128 (241)
T cd00306          60 NGG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP--PSSALSEAIDYAL  128 (241)
T ss_pred             CCC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC--CCHHHHHHHHHHH
Confidence            211         17999999999999         245899999999 89999999999987221  3456677777888


Q ss_pred             cC-CeEEEEecCCCCCCCC---CcCCCCCceEEEcccc
Q 038474          252 TK-GILTVNSAGNNGPKAG---FTSSIAPWLMSVAAST  285 (667)
Q Consensus       252 ~~-Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~  285 (667)
                      ++ |+++|+||||.+....   ..++..+++|+||+.+
T Consensus       129 ~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~  166 (241)
T cd00306         129 AKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVD  166 (241)
T ss_pred             HhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecC
Confidence            77 9999999999998765   4777889999999865

Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav

>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=5.3e-19  Score=197.80  Aligned_cols=144  Identities=23%  Similarity=0.345  Sum_probs=108.6

Q ss_pred             hhhcc--CCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCC-CCCCCCC
Q 038474           91 SITQR--RTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNG-SAIDEEG  167 (667)
Q Consensus        91 ~~w~~--~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~-~~~D~~g  167 (667)
                      ..|..  +++|+|++|+|||+||+..||+|.+....                        .++|..+  ... ...|..+
T Consensus       131 ~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~------------------------~~~~~~~--~~~~~~~d~~~  184 (508)
T COG1404         131 ALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA------------------------GGDFVDG--DPEPPFLDDNG  184 (508)
T ss_pred             cccccccCCCCCCeEEEEeccCCCCCChhhhccccc------------------------ccccccC--CCCCCCCCCCC
Confidence            68887  89999999999999999999999853110                        0122111  011 2568899


Q ss_pred             CcchhhhhhccccCCCCccccccccceeecccCcEEEEEe----------chhHHHHHHHHHHCC--CcEEEeCcCCCCC
Q 038474          168 HGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR----------GEKILAAFDDAIADG--VDIITISLGDTSA  235 (667)
Q Consensus       168 HGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k----------~~~i~~a~~~a~~~g--~dVin~SlG~~~~  235 (667)
                      |||||+|++++....  +     .....|+||+++++.++          ..+++++++++++.+  +++||||+|.. .
T Consensus       185 hGt~vag~ia~~~~~--~-----~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~-~  256 (508)
T COG1404         185 HGTHVAGTIAAVIFD--N-----GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGS-L  256 (508)
T ss_pred             Ccceeeeeeeeeccc--C-----CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCC-c
Confidence            999999999985211  1     11238999999999998          455789999999999  99999999985 2


Q ss_pred             CCChhhHHHHHHHHhhcCC-eEEEEecCCCCCCC
Q 038474          236 VDLAHDVIAIGAFHAMTKG-ILTVNSAGNNGPKA  268 (667)
Q Consensus       236 ~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~  268 (667)
                      .......+..++..++..| +++|+|+||.|...
T Consensus       257 ~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~  290 (508)
T COG1404         257 SDSASPALGDALAAAANAGGVVIVAAAGNDGSNA  290 (508)
T ss_pred             cccccHHHHHHHHHHHHcCCEEEEEecccCCCCC
Confidence            3344556677777887766 99999999999764

>cd04056 Peptidases_S53 Peptidase domain in the S53 family

Probab=99.58  E-value=1.7e-14  Score=156.24  Aligned_cols=97  Identities=23%  Similarity=0.259  Sum_probs=79.7

Q ss_pred             cceeecccCcEEEEEe-----chhHHHHHHHHHHC---CCcEEEeCcCCCCCCC--ChhhHHHHHHHHhhcCCeEEEEec
Q 038474          192 GMARGGVPSARISAYR-----GEKILAAFDDAIAD---GVDIITISLGDTSAVD--LAHDVIAIGAFHAMTKGILTVNSA  261 (667)
Q Consensus       192 g~~~GvAP~A~l~~~k-----~~~i~~a~~~a~~~---g~dVin~SlG~~~~~~--~~~~~~~~a~~~a~~~Gi~vV~AA  261 (667)
                      ..+.||||+|+|++|+     ..+++.++.+++.+   +++|||+|||......  .+...+..++.+|..+||+||+|+
T Consensus        81 ~~~~gvAP~a~i~~~~~~~~~~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~GitvvaAs  160 (361)
T cd04056          81 EYAGAIAPGANITLYFAPGTVTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLAAS  160 (361)
T ss_pred             HHHHhccCCCeEEEEEECCcCccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEEeC
Confidence            4458999999999999     26789999999988   9999999999873221  234667888888999999999999


Q ss_pred             CCCCCCCC-----------CcCCCCCceEEEccccCCc
Q 038474          262 GNNGPKAG-----------FTSSIAPWLMSVAASTTDR  288 (667)
Q Consensus       262 GN~G~~~~-----------~~~~~~p~vitVgA~~~d~  288 (667)
                      ||+|....           .+++.+|||++||+++...
T Consensus       161 Gd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~  198 (361)
T cd04056         161 GDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT  198 (361)
T ss_pred             CCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence            99997653           3567889999999987654

Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-

>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=1.9e-12  Score=132.65  Aligned_cols=163  Identities=13%  Similarity=0.189  Sum_probs=106.5

Q ss_pred             hhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCC-CCCCCCCCC--CCC
Q 038474           91 SITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR-DDGNGSAID--EEG  167 (667)
Q Consensus        91 ~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~-~~~~~~~~D--~~g  167 (667)
                      .+|..+++|++|++||+|.||||-|||+..+                      ..--.+++|..+ +.++..-.|  .+.
T Consensus       152 ~awa~g~tgknvttaimddgvdymhpdlk~n----------------------ynaeasydfssndpfpyprytddwfns  209 (629)
T KOG3526|consen  152 EAWALGYTGKNVTTAIMDDGVDYMHPDLKSN----------------------YNAEASYDFSSNDPFPYPRYTDDWFNS  209 (629)
T ss_pred             HHHhhcccCCCceEEeecCCchhcCcchhcc----------------------cCceeecccccCCCCCCCcccchhhhc
Confidence            8999999999999999999999999999732                      122344555443 333333333  679


Q ss_pred             CcchhhhhhccccCCCCccccccccceeecccCcEEEEEe--chhHHHHHHHHHH-----CCCcEEEeCcCCCCCCCC--
Q 038474          168 HGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR--GEKILAAFDDAIA-----DGVDIITISLGDTSAVDL--  238 (667)
Q Consensus       168 HGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k--~~~i~~a~~~a~~-----~g~dVin~SlG~~~~~~~--  238 (667)
                      |||.|||-+++...+  ++.|      .|||.+.++..+|  +.-.+.-+..|-.     ..++|.+.|||.......  
T Consensus       210 hgtrcagev~aardn--gicg------vgvaydskvagirmldqpymtdlieansmghep~kihiysaswgptddgktvd  281 (629)
T KOG3526|consen  210 HGTRCAGEVVAARDN--GICG------VGVAYDSKVAGIRMLDQPYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVD  281 (629)
T ss_pred             cCccccceeeeeccC--Ccee------eeeeeccccceeeecCCchhhhhhhhcccCCCCceEEEEecccCcCCCCcccC
Confidence            999999998887644  3444      5999999999999  2223333333333     347899999998732211  


Q ss_pred             -hhhHHHHHHHHhhc-----CCeEEEEecCCCCCCCCC-cC--CCCCceEEEcc
Q 038474          239 -AHDVIAIGAFHAMT-----KGILTVNSAGNNGPKAGF-TS--SIAPWLMSVAA  283 (667)
Q Consensus       239 -~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~-~~--~~~p~vitVgA  283 (667)
                       ..+...+|+.+-++     .|-+.|+|.|..|..... ..  +.+-|.|++-+
T Consensus       282 gprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisins  335 (629)
T KOG3526|consen  282 GPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINS  335 (629)
T ss_pred             CchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeeh
Confidence             22333334433333     467999999998864322 21  23457776643

>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase

Probab=99.15  E-value=2.3e-10  Score=107.60  Aligned_cols=107  Identities=26%  Similarity=0.297  Sum_probs=82.6

Q ss_pred             CCceeeEEEccCCCCCCCCCcccc--ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCCccc----ccccce
Q 038474          314 KGKMFPLLYGKGVTNSSSCTEDYA--NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYNVSL----ILPFPA  382 (667)
Q Consensus       314 ~~~~~~lv~~~~~~~~~~C~~~~~--~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~~----~~~iP~  382 (667)
                      .....++++.+.      |....+  .+++||||||+|     .+|..+++++||.++|++++.......    ...+|+
T Consensus        24 ~~~~~~lv~~g~------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~   97 (143)
T cd02133          24 LGKTYELVDAGL------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPV   97 (143)
T ss_pred             CCcEEEEEEccC------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeE
Confidence            346678888754      333333  579999999997     578999999999999999987653222    235899


Q ss_pred             EEeChhhHHHHHHhhhhchhhhhcccCCCCceEEE-eeeeeecCCCCCcccccCCCCCCC
Q 038474          383 STVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEI-LKTSVIKDSDAPIVASFSSRGPNK  441 (667)
Q Consensus       383 ~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~i-~~~t~~~~~~~~~~a~FSSrGPt~  441 (667)
                      +.|+.++|++|++        |+++      +++| +..+.. ..+++.++.||||||+.
T Consensus        98 v~Is~~dG~~L~~--------~l~~------~~~i~~~~~~~-~~~~p~va~fSsrgp~g  142 (143)
T cd02133          98 VFISKEDGEALKA--------ALES------SKKLTFNTKKE-KATNPDLADFSSRGPWG  142 (143)
T ss_pred             EEecHHHHHHHHH--------HHhC------CCeEEEEeccc-cccCCccccccCcCCCC
Confidence            9999999999999        7753      4566 555555 56789999999999974

This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin

>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases

Probab=99.12  E-value=5.1e-10  Score=102.72  Aligned_cols=111  Identities=35%  Similarity=0.544  Sum_probs=86.8

Q ss_pred             EEeCCCeEEEEEEeeeccCCCCceeeEEEccCCC---CCCCCCcccc--ccccccEEEEee------chhhHHHHhcCce
Q 038474          294 VVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVT---NSSSCTEDYA--NLVKGNIVLCDE------FSGYHVAREAGAA  362 (667)
Q Consensus       294 ~~~~~~~~~~g~~s~~~~~~~~~~~~lv~~~~~~---~~~~C~~~~~--~~~~gkIvl~~~------~~~~~~~~~~Ga~  362 (667)
                      ++|+||+.+.| +++++...  ..+++++.....   ....|....+  .+++||||||+|      .++..+++++||.
T Consensus         2 i~LGng~~i~G-~sl~~~~~--~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~   78 (126)
T cd02120           2 VTLGNGKTIVG-QSLYPGNL--KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGA   78 (126)
T ss_pred             EEeCCCCEEEE-EEccCCCC--CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCc
Confidence            67899999999 99997554  456777643321   2248988777  679999999987      3578899999999


Q ss_pred             EEEEecCCCCCccc---ccccceEEeChhhHHHHHHhhhhchhhhhcccCCCCceEEE
Q 038474          363 GLILKDNRLYNVSL---ILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEI  417 (667)
Q Consensus       363 g~i~~~~~~~~~~~---~~~iP~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~i  417 (667)
                      |+|++++.......   ...+|++.|+.++++.|++        |++++  ++++++|
T Consensus        79 gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~--------y~~~~--~~~~~~i  126 (126)
T cd02120          79 GMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILS--------YINST--SNPTATI  126 (126)
T ss_pred             EEEEEecCCCCceecccccccceEEECHHHHHHHHH--------HHHcC--CCcceeC
Confidence            99999987654322   2569999999999999999        99987  6666653

This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu

>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=98.90  E-value=1.7e-09  Score=91.32  Aligned_cols=78  Identities=36%  Similarity=0.444  Sum_probs=55.6

Q ss_pred             CEEEEeCCCCCCCCCchhHHHHHHHHHhc---C-CCCcccEEEEecceeeEEEEEeCHHHHHHHHcCCCeeEEEcCcccc
Q 038474            1 VYIVYMGSLPEGEYLPSSHHQSILEEVVE---G-SSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQ   76 (667)
Q Consensus         1 ~yiv~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~v~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~v~~~~~~~   76 (667)
                      +|||.|++..........+.+++.+.+.+   . ...+.++++.|+..||||+++++++++++|+++|+|++|+||..++
T Consensus         1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~   80 (82)
T PF05922_consen    1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS   80 (82)
T ss_dssp             EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred             CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence            59999999875222244555555433322   1 3457799999988999999999999999999999999999999887


Q ss_pred             cC
Q 038474           77 LH   78 (667)
Q Consensus        77 ~~   78 (667)
                      ++
T Consensus        81 l~   82 (82)
T PF05922_consen   81 LH   82 (82)
T ss_dssp             E-
T ss_pred             cC
Confidence            64

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....

>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []

Probab=98.40  E-value=2.9e-07  Score=80.77  Aligned_cols=79  Identities=20%  Similarity=0.250  Sum_probs=55.9

Q ss_pred             eeeEEEccCCCCCCCCCcccc--ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCC-------Ccccccccce
Q 038474          317 MFPLLYGKGVTNSSSCTEDYA--NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLY-------NVSLILPFPA  382 (667)
Q Consensus       317 ~~~lv~~~~~~~~~~C~~~~~--~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~-------~~~~~~~iP~  382 (667)
                      ..+|+..........|.....  .+++||||||+|     .+|..+++++||.|+|+++....       .......||+
T Consensus         7 ~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~   86 (101)
T PF02225_consen    7 TGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPV   86 (101)
T ss_dssp             EEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEE
T ss_pred             EEEEEEecCCCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEE
Confidence            346663333222234554444  889999999988     68999999999999999992211       1233456999


Q ss_pred             EEeChhhHHHHHH
Q 038474          383 STVTPDKFNSIIH  395 (667)
Q Consensus       383 ~~i~~~~g~~l~~  395 (667)
                      +.|+..+|++|++
T Consensus        87 v~I~~~~g~~L~~   99 (101)
T PF02225_consen   87 VFISYEDGEALLA   99 (101)
T ss_dssp             EEE-HHHHHHHHH
T ss_pred             EEeCHHHHhhhhc
Confidence            9999999999998

The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....

>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1

Probab=98.28  E-value=3.2e-06  Score=76.69  Aligned_cols=71  Identities=21%  Similarity=0.239  Sum_probs=59.3

Q ss_pred             CCCCcccc-ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCCcc-------cccccceEEeChhhHHHHHHh
Q 038474          330 SSCTEDYA-NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYNVS-------LILPFPASTVTPDKFNSIIHQ  396 (667)
Q Consensus       330 ~~C~~~~~-~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~-------~~~~iP~~~i~~~~g~~l~~~  396 (667)
                      +.|.+..+ .+++||||||+|     .+|..+++++||+++|++++......       ....+|++.|+.++++.|++ 
T Consensus        28 ~~C~~~~~~~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~~-  106 (118)
T cd04818          28 DGCTAFTNAAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALKA-  106 (118)
T ss_pred             cccCCCCcCCCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHHH-
Confidence            38998887 789999999987     47899999999999999988764221       12459999999999999999 


Q ss_pred             hhhchhhhhccc
Q 038474          397 FYQVIMNFLRSS  408 (667)
Q Consensus       397 ~~~~~~~~~~~~  408 (667)
                             |++..
T Consensus       107 -------~l~~g  111 (118)
T cd04818         107 -------ALAAG  111 (118)
T ss_pred             -------HHhcC
Confidence                   88754

A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.

>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH)

Probab=98.28  E-value=3.7e-06  Score=76.77  Aligned_cols=78  Identities=24%  Similarity=0.242  Sum_probs=60.8

Q ss_pred             eeeEEEccCCCCCCCCCcccc--ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCCc-----c---cccccc
Q 038474          317 MFPLLYGKGVTNSSSCTEDYA--NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYNV-----S---LILPFP  381 (667)
Q Consensus       317 ~~~lv~~~~~~~~~~C~~~~~--~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~-----~---~~~~iP  381 (667)
                      ..+|++... ...+.|.+..+  .+++||||||+|     .+|..+++++||+++|++|+.....     .   ....+|
T Consensus        18 ~~~lv~~~~-~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP   96 (122)
T cd04816          18 TAPLVPLDP-ERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVP   96 (122)
T ss_pred             EEEEEEcCC-CCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeee
Confidence            346666432 22358988766  689999999998     5789999999999999999876311     0   223499


Q ss_pred             eEEeChhhHHHHHH
Q 038474          382 ASTVTPDKFNSIIH  395 (667)
Q Consensus       382 ~~~i~~~~g~~l~~  395 (667)
                      ++.|+..+|++|++
T Consensus        97 ~~~Is~~~G~~l~~  110 (122)
T cd04816          97 VGVITKAAGAALRR  110 (122)
T ss_pred             EEEEcHHHHHHHHH
Confidence            99999999999999

This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY)

Probab=98.21  E-value=1.2e-05  Score=73.31  Aligned_cols=75  Identities=23%  Similarity=0.217  Sum_probs=59.3

Q ss_pred             eeeEEEccCCCCCCCCCcccc-ccccccEEEEee-----chhhHHHHhcCceEEEEecCC-CCCcc------cccccceE
Q 038474          317 MFPLLYGKGVTNSSSCTEDYA-NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNR-LYNVS------LILPFPAS  383 (667)
Q Consensus       317 ~~~lv~~~~~~~~~~C~~~~~-~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~-~~~~~------~~~~iP~~  383 (667)
                      .-++++..    ...|.+..+ .+++|||||++|     .+|..+++++||.++|++|+. .....      ....+|++
T Consensus        23 ~g~lv~~~----~~gC~~~~~~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v   98 (122)
T cd02130          23 TGPLVVVP----NLGCDAADYPASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTV   98 (122)
T ss_pred             EEEEEEeC----CCCCCcccCCcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEE
Confidence            45677653    236887666 679999999998     689999999999999999987 32211      12359999


Q ss_pred             EeChhhHHHHHH
Q 038474          384 TVTPDKFNSIIH  395 (667)
Q Consensus       384 ~i~~~~g~~l~~  395 (667)
                      .|+.++|+.|++
T Consensus        99 ~Is~~~G~~L~~  110 (122)
T cd02130          99 GISQEDGKALVA  110 (122)
T ss_pred             EecHHHHHHHHH
Confidence            999999999999

This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab

>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.20  E-value=2.2e-05  Score=70.48  Aligned_cols=80  Identities=19%  Similarity=0.312  Sum_probs=57.1

Q ss_pred             eEEEEEEEEecCCCCeeEEEEEec--------CCc----------e-EEEEEcCEEEEeeCCcEEEEEEEEEeec---CC
Q 038474          586 TIKFPRTVTNIGLPNSTYKARILQ--------NSK----------I-SVNVVPEVLSFRSLNEKKSFIVTVTGKG---LA  643 (667)
Q Consensus       586 ~~~~~rtvtNvg~~~~tY~~~v~~--------p~g----------~-~v~v~P~~l~f~~~g~~~~~~Vt~~~~~---~~  643 (667)
                      ..+++-|++|.|+...+|+++...        ..|          . .+...|.+|++ ++|++++++|+|+.+.   ..
T Consensus         9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~~~   87 (112)
T PF06280_consen    9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLDAS   87 (112)
T ss_dssp             EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHHT
T ss_pred             ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCCcc
Confidence            578899999999999999998751        011          1 67888999999 9999999999999954   23


Q ss_pred             CCCeEEEEEEEEc-CCe-EEEeeEE
Q 038474          644 SGSIVSAALVWFD-GSH-IVRSPIV  666 (667)
Q Consensus       644 ~~~~~~G~l~w~~-~~h-~vr~P~~  666 (667)
                      +..+++|+|.+++ ..+ .+++|+.
T Consensus        88 ~~~~~eG~I~~~~~~~~~~lsIPy~  112 (112)
T PF06280_consen   88 NGPFYEGFITFKSSDGEPDLSIPYM  112 (112)
T ss_dssp             T-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred             cCCEEEEEEEEEcCCCCEEEEeeeC
Confidence            4689999999997 444 8999984

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.

>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like

Probab=98.12  E-value=9.9e-06  Score=73.20  Aligned_cols=77  Identities=17%  Similarity=0.257  Sum_probs=62.0

Q ss_pred             ceeeEEEccCCCCCCCCCcccc--ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCCc-------ccccccc
Q 038474          316 KMFPLLYGKGVTNSSSCTEDYA--NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYNV-------SLILPFP  381 (667)
Q Consensus       316 ~~~~lv~~~~~~~~~~C~~~~~--~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~-------~~~~~iP  381 (667)
                      ..+||+.....   ..|.+...  .+++|||+|++|     .+|..+++++||.++|++|+.....       .....||
T Consensus        20 ~~~~~~~~~~~---~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP   96 (120)
T cd02129          20 TLLPLRNLTSS---VLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIP   96 (120)
T ss_pred             cceeeecCCCc---CCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCccc
Confidence            44666665543   38998776  689999999999     7899999999999999999976311       1234589


Q ss_pred             eEEeChhhHHHHHH
Q 038474          382 ASTVTPDKFNSIIH  395 (667)
Q Consensus       382 ~~~i~~~~g~~l~~  395 (667)
                      +++|+..+|++|++
T Consensus        97 ~v~Is~~dG~~i~~  110 (120)
T cd02129          97 VALLSYKDMLDIQQ  110 (120)
T ss_pred             EEEEeHHHHHHHHH
Confidence            99999999999998

This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa)

Probab=98.08  E-value=2.3e-05  Score=71.05  Aligned_cols=66  Identities=24%  Similarity=0.245  Sum_probs=54.7

Q ss_pred             CCCCcccc-ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCC-c----------ccccccceEEeChhhHHH
Q 038474          330 SSCTEDYA-NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYN-V----------SLILPFPASTVTPDKFNS  392 (667)
Q Consensus       330 ~~C~~~~~-~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~-~----------~~~~~iP~~~i~~~~g~~  392 (667)
                      +.|.+... .+++|||+|++|     .+|..+++++||.++|++|+.... .          .....||++.|+..+|+.
T Consensus        22 ~gC~~~~~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG~~  101 (118)
T cd02127          22 EACEELRNIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNGYM  101 (118)
T ss_pred             ccCCCCCCccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHHHH
Confidence            47987555 689999999999     789999999999999999976531 1          122359999999999999


Q ss_pred             HHH
Q 038474          393 IIH  395 (667)
Q Consensus       393 l~~  395 (667)
                      |++
T Consensus       102 L~~  104 (118)
T cd02127         102 IRK  104 (118)
T ss_pred             HHH
Confidence            999

This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like

Probab=98.00  E-value=2.5e-05  Score=72.72  Aligned_cols=72  Identities=18%  Similarity=0.107  Sum_probs=57.0

Q ss_pred             cCCCCCCCCCcccc----ccccccEEEEee-----chhhHHHHhcCceEEEEecCCC-CCccc------ccccceEEeCh
Q 038474          324 KGVTNSSSCTEDYA----NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRL-YNVSL------ILPFPASTVTP  387 (667)
Q Consensus       324 ~~~~~~~~C~~~~~----~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~-~~~~~------~~~iP~~~i~~  387 (667)
                      ......+.|.+...    .+++|+|+|++|     .+|..+++++||.++|++|+.. ....+      ...+|.++|+.
T Consensus        39 ~~~~~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~  118 (138)
T cd02122          39 DPPNDHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITN  118 (138)
T ss_pred             CCCCCcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcH
Confidence            33334458987553    678999999999     6899999999999999999986 21111      12589999999


Q ss_pred             hhHHHHHH
Q 038474          388 DKFNSIIH  395 (667)
Q Consensus       388 ~~g~~l~~  395 (667)
                      .+|++|++
T Consensus       119 ~~G~~l~~  126 (138)
T cd02122         119 PKGMEILE  126 (138)
T ss_pred             HHHHHHHH
Confidence            99999999

This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase

>cd00538 PA PA: Protease-associated (PA) domain

Probab=97.99  E-value=1.6e-05  Score=72.54  Aligned_cols=70  Identities=23%  Similarity=0.258  Sum_probs=57.2

Q ss_pred             CCCccc--c--ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCC--c--c-----cccccceEEeChhhHHH
Q 038474          331 SCTEDY--A--NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYN--V--S-----LILPFPASTVTPDKFNS  392 (667)
Q Consensus       331 ~C~~~~--~--~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~--~--~-----~~~~iP~~~i~~~~g~~  392 (667)
                      .|.+..  +  .+++||||||+|     .+|..+++++||+|+|++++....  .  .     ....+|++.|+..+|++
T Consensus        32 ~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g~~  111 (126)
T cd00538          32 GCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGEA  111 (126)
T ss_pred             EEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHHHH
Confidence            687765  3  779999999987     578999999999999999987632  1  1     22469999999999999


Q ss_pred             HHHhhhhchhhhhccc
Q 038474          393 IIHQFYQVIMNFLRSS  408 (667)
Q Consensus       393 l~~~~~~~~~~~~~~~  408 (667)
                      |++        |+.+.
T Consensus       112 l~~--------~~~~~  119 (126)
T cd00538         112 LLS--------LLEAG  119 (126)
T ss_pred             HHH--------HHhcC
Confidence            999        87654

The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g

>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10

Probab=97.96  E-value=3.5e-05  Score=72.05  Aligned_cols=75  Identities=12%  Similarity=0.238  Sum_probs=58.8

Q ss_pred             eeeEEEccCCCCCCCCCccccccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCCccc---------ccccce
Q 038474          317 MFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYNVSL---------ILPFPA  382 (667)
Q Consensus       317 ~~~lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~~---------~~~iP~  382 (667)
                      ..+++....   .+.|.+.. .+++|||+|++|     .+|..+++++||.++|++|+......+         ...||+
T Consensus        39 ~~~lv~~~~---~~gC~~~~-~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~  114 (139)
T cd02132          39 KTRAVLANP---LDCCSPST-SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPV  114 (139)
T ss_pred             EEEEEECCc---ccccCCCC-cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeE
Confidence            445555432   34798654 589999999999     689999999999999999887532111         246999


Q ss_pred             EEeChhhHHHHHH
Q 038474          383 STVTPDKFNSIIH  395 (667)
Q Consensus       383 ~~i~~~~g~~l~~  395 (667)
                      +.|+..+|++|++
T Consensus       115 v~Is~~~G~~L~~  127 (139)
T cd02132         115 VMIPQSAGDALNK  127 (139)
T ss_pred             EEecHHHHHHHHH
Confidence            9999999999999

This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins

Probab=97.94  E-value=2.1e-05  Score=72.22  Aligned_cols=66  Identities=21%  Similarity=0.282  Sum_probs=54.8

Q ss_pred             CCCCcccc-ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCC------c---------ccccccceEEeChh
Q 038474          330 SSCTEDYA-NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYN------V---------SLILPFPASTVTPD  388 (667)
Q Consensus       330 ~~C~~~~~-~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~------~---------~~~~~iP~~~i~~~  388 (667)
                      +.|.+... .+++|||+|++|     .+|..+++++||.++|++|+.+..      .         .....||+++|+..
T Consensus        28 ~gC~~~~~~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~~~  107 (126)
T cd02126          28 RACSEITNAEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLFSK  107 (126)
T ss_pred             hcccCCCCccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEEHH
Confidence            47987666 679999999999     689999999999999999876531      0         01345999999999


Q ss_pred             hHHHHHH
Q 038474          389 KFNSIIH  395 (667)
Q Consensus       389 ~g~~l~~  395 (667)
                      +|+.|++
T Consensus       108 dG~~L~~  114 (126)
T cd02126         108 EGSKLLA  114 (126)
T ss_pred             HHHHHHH
Confidence            9999999

This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr

>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1

Probab=97.89  E-value=3.4e-05  Score=69.81  Aligned_cols=66  Identities=15%  Similarity=0.250  Sum_probs=55.2

Q ss_pred             CCCCccccccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCC-c--------ccccccceEEeChhhHHHHHH
Q 038474          330 SSCTEDYANLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYN-V--------SLILPFPASTVTPDKFNSIIH  395 (667)
Q Consensus       330 ~~C~~~~~~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~-~--------~~~~~iP~~~i~~~~g~~l~~  395 (667)
                      +.|.+....+++|||||++|     .+|..+++++||+++|++|+.... .        .....+|++.|+.+++++|++
T Consensus        28 ~gC~~~~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~~L~~  107 (117)
T cd04813          28 DACSLQEHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYHLLSS  107 (117)
T ss_pred             CCCCCCCcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHHHHHH
Confidence            48987755889999999999     789999999999999999877642 1        122359999999999999988

A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid

>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR)

Probab=97.84  E-value=9.7e-05  Score=67.85  Aligned_cols=66  Identities=21%  Similarity=0.179  Sum_probs=53.3

Q ss_pred             CCCCcccc---c-----cccccEEEEee-----chhhHHHHhcCceEEEEecCCCCC-c-------------ccccccce
Q 038474          330 SSCTEDYA---N-----LVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYN-V-------------SLILPFPA  382 (667)
Q Consensus       330 ~~C~~~~~---~-----~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~-~-------------~~~~~iP~  382 (667)
                      +.|.+...   .     ...+||+|++|     .+|..+|+++||+++|++|+.+.. .             .....||+
T Consensus        23 ~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP~  102 (127)
T cd02125          23 TGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIPS  102 (127)
T ss_pred             ccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEeE
Confidence            47876544   1     37889999999     689999999999999999986542 1             11235899


Q ss_pred             EEeChhhHHHHHH
Q 038474          383 STVTPDKFNSIIH  395 (667)
Q Consensus       383 ~~i~~~~g~~l~~  395 (667)
                      ++|+..+|+.|++
T Consensus       103 v~Is~~~G~~L~~  115 (127)
T cd02125         103 ALITKAFGEKLKK  115 (127)
T ss_pred             EEECHHHHHHHHH
Confidence            9999999999999

This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic

>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like

Probab=97.79  E-value=0.00011  Score=67.62  Aligned_cols=77  Identities=19%  Similarity=0.119  Sum_probs=56.9

Q ss_pred             eeEEEccCCC--CCCCCCcccc--ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCCcc----cccccceEE
Q 038474          318 FPLLYGKGVT--NSSSCTEDYA--NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYNVS----LILPFPAST  384 (667)
Q Consensus       318 ~~lv~~~~~~--~~~~C~~~~~--~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~----~~~~iP~~~  384 (667)
                      +|++...-..  ..+.|.+...  .+++|||+|++|     .+|..+++++||+++|++|+.+....    ....+|.+.
T Consensus        28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~  107 (129)
T cd02124          28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAV  107 (129)
T ss_pred             ceEEEeecccCCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEE
Confidence            5655543322  2348986543  679999999999     68999999999999999998764321    122366666


Q ss_pred             eChhhHHHHHH
Q 038474          385 VTPDKFNSIIH  395 (667)
Q Consensus       385 i~~~~g~~l~~  395 (667)
                      + .++|++|++
T Consensus       108 ~-~~~G~~l~~  117 (129)
T cd02124         108 T-PEDGEAWID  117 (129)
T ss_pred             e-HHHHHHHHH
Confidence            6 999999999

This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530

Probab=97.74  E-value=7.2e-05  Score=69.53  Aligned_cols=58  Identities=17%  Similarity=0.164  Sum_probs=48.5

Q ss_pred             ccccccEEEEee---c-------hhhHHHHhcCceEEEEecCC--CCCc-----c--cccccceEEeChhhHHHHHH
Q 038474          338 NLVKGNIVLCDE---F-------SGYHVAREAGAAGLILKDNR--LYNV-----S--LILPFPASTVTPDKFNSIIH  395 (667)
Q Consensus       338 ~~~~gkIvl~~~---~-------~~~~~~~~~Ga~g~i~~~~~--~~~~-----~--~~~~iP~~~i~~~~g~~l~~  395 (667)
                      .+++|||+|++|   .       +|..+|+++||+++|+||+.  +...     .  ....||++.|++.+|++|++
T Consensus        53 ~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~  129 (139)
T cd04817          53 GGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA  129 (139)
T ss_pred             CCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence            579999999998   2       67899999999999999998  4321     1  13469999999999999999

This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.0003  Score=83.86  Aligned_cols=158  Identities=17%  Similarity=0.177  Sum_probs=88.5

Q ss_pred             hhhccCCCCCCcEEEEEc-CCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCc
Q 038474           91 SITQRRTVESDLIVGVID-TGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHG  169 (667)
Q Consensus        91 ~~w~~~~~G~gv~VgViD-tGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHG  169 (667)
                      .+.+.+.+|+|++||||| =|-.+...++.        .-|+..   |.......++.    +.+         -..+|+
T Consensus       219 ~l~~~g~tGkG~tIaIid~yG~p~~~~dl~--------~Fd~~~---Gip~~~~~~V~----~ig---------~g~~~~  274 (1174)
T COG4934         219 ALYESGATGKGETIAIIDAYGDPYNNQDLY--------SFDQQY---GIPNPILSRVT----YIG---------PGIGSG  274 (1174)
T ss_pred             ecccCCCCCCCcEEEEEeccCCcccHHHHH--------HHHHhh---CCCCCCceEEE----EeC---------CCCCCC
Confidence            455667899999999999 55444433332        111110   00000011111    110         235677


Q ss_pred             chhhhhhccccCCCCccccccccceeecccCcEEEEEe-chhHHHHHHHHHH----CCC-cEEEeCcCCCC--CCCC--h
Q 038474          170 SNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-GEKILAAFDDAIA----DGV-DIITISLGDTS--AVDL--A  239 (667)
Q Consensus       170 ThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-~~~i~~a~~~a~~----~g~-dVin~SlG~~~--~~~~--~  239 (667)
                      ||=+.-+           -+......-+||+|+|..+- ....+-|++-|+.    .-+ -++-.||+...  ...+  .
T Consensus       275 ~~g~~E~-----------sLDVE~s~A~AP~A~I~lvvap~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~  343 (1174)
T COG4934         275 TGGAEET-----------SLDVEWSHAMAPKANIDLVVAPNPLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGY  343 (1174)
T ss_pred             CCccccc-----------eeehhhhhccCccCceEEEEcCCCceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHH
Confidence            7754311           12334457899999999988 3333334443332    111 33335665431  1222  3


Q ss_pred             hhHHHHHHHHhhcCCeEEEEecCCCCCCCCC--------cCCCCCceEEEcc
Q 038474          240 HDVIAIGAFHAMTKGILTVNSAGNNGPKAGF--------TSSIAPWLMSVAA  283 (667)
Q Consensus       240 ~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------~~~~~p~vitVgA  283 (667)
                      -+.+..-...|..+||.+++|+|-+|....+        .++.+|+|++||-
T Consensus       344 ~~~~d~l~~qasaeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG  395 (1174)
T COG4934         344 ADLMDLLYEQASAEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG  395 (1174)
T ss_pred             HHHHHHHHHHhhccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence            3445555567778999999999999866543        4567899999987

>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2

Probab=97.61  E-value=0.00042  Score=63.70  Aligned_cols=78  Identities=15%  Similarity=0.053  Sum_probs=57.5

Q ss_pred             CceeeEEEccCCCCCCCCCccccccccccEEEEee--c-----hhhHHHHhcCceEEEEecCCCCCcc----------cc
Q 038474          315 GKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDE--F-----SGYHVAREAGAAGLILKDNRLYNVS----------LI  377 (667)
Q Consensus       315 ~~~~~lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~--~-----~~~~~~~~~Ga~g~i~~~~~~~~~~----------~~  377 (667)
                      ....++++.+.....+.+    -.+++|||||+++  .     +|..+++++||+|+|++++......          ..
T Consensus        22 ~~~~~lV~~g~G~~~d~~----~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~   97 (127)
T cd04819          22 EAKGEPVDAGYGLPKDFD----GLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPP   97 (127)
T ss_pred             CeeEEEEEeCCCCHHHcC----CCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCC
Confidence            346788887643211111    1569999999998  2     4789999999999999987665321          12


Q ss_pred             cccceEEeChhhHHHHHHh
Q 038474          378 LPFPASTVTPDKFNSIIHQ  396 (667)
Q Consensus       378 ~~iP~~~i~~~~g~~l~~~  396 (667)
                      ..+|++.|+.+++++|+++
T Consensus        98 ~~IP~v~Is~edg~~L~~~  116 (127)
T cd04819          98 SPIPAASVSGEDGLRLARV  116 (127)
T ss_pred             CCCCEEEEeHHHHHHHHHH
Confidence            3599999999999999993

A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola

>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like

Probab=97.43  E-value=0.00029  Score=66.92  Aligned_cols=66  Identities=18%  Similarity=0.156  Sum_probs=54.9

Q ss_pred             CCCCcccc-----ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCCc-c--------cccccceEEeChhhH
Q 038474          330 SSCTEDYA-----NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYNV-S--------LILPFPASTVTPDKF  390 (667)
Q Consensus       330 ~~C~~~~~-----~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~-~--------~~~~iP~~~i~~~~g  390 (667)
                      +.|.+...     ..+.|||+|++|     .+|..+|+++||.++|++|+..... .        ....||+++|+..+|
T Consensus        51 ~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~dg  130 (153)
T cd02123          51 NACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKSTG  130 (153)
T ss_pred             ccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHHH
Confidence            47886553     678999999999     7899999999999999999865421 1        134699999999999


Q ss_pred             HHHHH
Q 038474          391 NSIIH  395 (667)
Q Consensus       391 ~~l~~  395 (667)
                      +.|+.
T Consensus       131 ~~L~~  135 (153)
T cd02123         131 EILKK  135 (153)
T ss_pred             HHHHH
Confidence            99999

This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce

>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.0042  Score=68.67  Aligned_cols=153  Identities=16%  Similarity=0.156  Sum_probs=97.3

Q ss_pred             CCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCC---CCCCCCCC
Q 038474           87 GFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR---DDGNGSAI  163 (667)
Q Consensus        87 g~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~---~~~~~~~~  163 (667)
                      .+. ..|..+++|.++.|+|+|+|+...||+..+. +                     ...+..++..+   ..+-.+..
T Consensus        21 ~v~-~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-~---------------------~~~~s~d~~~~~~~p~~~~~~~   77 (431)
T KOG3525|consen   21 NVQ-NAWCKGYTGTRVSVTILDDGLECSHPDLRNN-Y---------------------DPLGSYDVNRHDNDPEPRCDGT   77 (431)
T ss_pred             eee-eccccCCCCCceEEEEeeccccccCcccccc-c---------------------CcceeEeeecCCCCcccccCCC
Confidence            344 7899999999999999999999999999742 1                     22333333322   11122233


Q ss_pred             CCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe--ch---hHHHHHHHHHH-CCCcEEEeCcCCCCCCC
Q 038474          164 DEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR--GE---KILAAFDDAIA-DGVDIITISLGDTSAVD  237 (667)
Q Consensus       164 D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k--~~---~i~~a~~~a~~-~g~dVin~SlG~~~~~~  237 (667)
                      ....|||-|++-.+....+..        -..|+++++++..++  ..   +...+...... .-+++-+.|||......
T Consensus        78 ~~~~~g~~Ca~~~a~~~~~~~--------C~vg~~~~~~~~g~~~l~~~v~~~~~~~~~~~~~~~~di~scsw~pddd~~  149 (431)
T KOG3525|consen   78 NENKHGTRCAGCVAARANNLT--------CGVGVAYNATIGGIRMLAGCVSDAVEAPSLGFGPCHIDIYSCSWGPDDDGK  149 (431)
T ss_pred             CccccCCCCCcccccccCCCc--------CCCCcccCccccceeeeeeecccceecccccCCCCCceeecCcCCcccCCC
Confidence            458899999999998862211        126999999999888  22   22222222222 34789999999763221


Q ss_pred             ---ChhhHHHHHHHHhh-----cCCeEEEEecCCCCCCCCC
Q 038474          238 ---LAHDVIAIGAFHAM-----TKGILTVNSAGNNGPKAGF  270 (667)
Q Consensus       238 ---~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~G~~~~~  270 (667)
                         ........+...+.     .+|-+.|+|.||.|.....
T Consensus       150 t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d~  190 (431)
T KOG3525|consen  150 TCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGDS  190 (431)
T ss_pred             cCCCCcchhhhhhhccccccccCCCCeeEEEecCccccccc
Confidence               11222333333333     4788999999999865544

>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3

Probab=96.41  E-value=0.015  Score=54.93  Aligned_cols=80  Identities=20%  Similarity=0.120  Sum_probs=56.3

Q ss_pred             ceeeEEEccCCCCCCCCCcccc--ccccccEEEEeec-----------------------hhhHHHHhcCceEEEEecCC
Q 038474          316 KMFPLLYGKGVTNSSSCTEDYA--NLVKGNIVLCDEF-----------------------SGYHVAREAGAAGLILKDNR  370 (667)
Q Consensus       316 ~~~~lv~~~~~~~~~~C~~~~~--~~~~gkIvl~~~~-----------------------~~~~~~~~~Ga~g~i~~~~~  370 (667)
                      ...++|+.+.......|.....  .+++|||||+.+.                       .|..+++++||+|+|++++.
T Consensus        20 vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~   99 (151)
T cd04822          20 VTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGP   99 (151)
T ss_pred             ceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCC
Confidence            3568888876655557776665  7899999999652                       47899999999999999987


Q ss_pred             CCCcccccccc------eEEeChhhHHHHHH
Q 038474          371 LYNVSLILPFP------ASTVTPDKFNSIIH  395 (667)
Q Consensus       371 ~~~~~~~~~iP------~~~i~~~~g~~l~~  395 (667)
                      .........+|      ++.++....+.++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (151)
T cd04822         100 NSHSGDADRLPRFGGTAPQRVDIAAADPWFT  130 (151)
T ss_pred             cccCcccccccccCccceEEechHHHHHHhh
Confidence            65322111122      56677666666665

A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=96.35  E-value=0.059  Score=47.17  Aligned_cols=90  Identities=17%  Similarity=0.104  Sum_probs=64.9

Q ss_pred             CCCCCCcEEEeecCCCceeEEEEEEEEecCCCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCe
Q 038474          568 KDLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSI  647 (667)
Q Consensus       568 ~~lNypsi~~~~~~~~~~~~~~~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~  647 (667)
                      ..|++..+.+..      ..+.+-+++|.|..+..|++.......-.++|+|..-.+ ++|++.+++|+|.....  .+.
T Consensus         9 ~~ldFG~v~~g~------~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~~--~g~   79 (102)
T PF14874_consen    9 KELDFGNVFVGQ------TYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTKP--LGD   79 (102)
T ss_pred             CEEEeeEEccCC------EEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCCC--Cce
Confidence            355555554422      556677889999999999987654334557778877656 89999999999995432  345


Q ss_pred             EEEEEEEEcCCeEEEeeEE
Q 038474          648 VSAALVWFDGSHIVRSPIV  666 (667)
Q Consensus       648 ~~G~l~w~~~~h~vr~P~~  666 (667)
                      +.+.|...-.+..+.+|+-
T Consensus        80 ~~~~l~i~~e~~~~~i~v~   98 (102)
T PF14874_consen   80 YEGSLVITTEGGSFEIPVK   98 (102)
T ss_pred             EEEEEEEEECCeEEEEEEE
Confidence            7899988776677877763

>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2

Probab=96.30  E-value=0.011  Score=54.83  Aligned_cols=59  Identities=17%  Similarity=0.227  Sum_probs=45.3

Q ss_pred             ccccccEEEEeec-----------hh-------hHHHHhcCceEEEEecCCCC------Cc-----ccccccceEEeChh
Q 038474          338 NLVKGNIVLCDEF-----------SG-------YHVAREAGAAGLILKDNRLY------NV-----SLILPFPASTVTPD  388 (667)
Q Consensus       338 ~~~~gkIvl~~~~-----------~~-------~~~~~~~Ga~g~i~~~~~~~------~~-----~~~~~iP~~~i~~~  388 (667)
                      .+++|||||+++.           .|       ...++++||.++|++|....      ..     .....+|++.|+.+
T Consensus        36 ~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~e  115 (134)
T cd04815          36 GAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISVE  115 (134)
T ss_pred             hhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEechh
Confidence            5799999999871           22       58899999999999986421      11     11234999999999


Q ss_pred             hHHHHHHh
Q 038474          389 KFNSIIHQ  396 (667)
Q Consensus       389 ~g~~l~~~  396 (667)
                      ++..|.++
T Consensus       116 d~~~L~r~  123 (134)
T cd04815         116 DADMLERL  123 (134)
T ss_pred             cHHHHHHH
Confidence            99999983

A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a

>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR)

Probab=96.28  E-value=0.0067  Score=58.95  Aligned_cols=58  Identities=19%  Similarity=0.232  Sum_probs=46.8

Q ss_pred             ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCCcc-------------------------------------
Q 038474          338 NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYNVS-------------------------------------  375 (667)
Q Consensus       338 ~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~-------------------------------------  375 (667)
                      .+++|||||+++     .+|..+|+++||+|+|+|++......                                     
T Consensus        52 v~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~  131 (183)
T cd02128          52 VSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQSS  131 (183)
T ss_pred             CCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCccccc
Confidence            479999999997     67999999999999999988421000                                     


Q ss_pred             cccccceEEeChhhHHHHHH
Q 038474          376 LILPFPASTVTPDKFNSIIH  395 (667)
Q Consensus       376 ~~~~iP~~~i~~~~g~~l~~  395 (667)
                      ....||++-|+..++..|++
T Consensus       132 ~lP~IPs~PIS~~da~~lL~  151 (183)
T cd02128         132 GLPNIPAQTISAAAAAKLLS  151 (183)
T ss_pred             CCCCCCEeccCHHHHHHHHH
Confidence            01238999999999999999

This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra

>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1

Probab=95.93  E-value=0.016  Score=53.72  Aligned_cols=57  Identities=25%  Similarity=0.127  Sum_probs=45.7

Q ss_pred             ceeeEEEccCCCCCCCCCcccc--ccccccEEEEee-----------------chhhHHHHhcCceEEEEecCCCC
Q 038474          316 KMFPLLYGKGVTNSSSCTEDYA--NLVKGNIVLCDE-----------------FSGYHVAREAGAAGLILKDNRLY  372 (667)
Q Consensus       316 ~~~~lv~~~~~~~~~~C~~~~~--~~~~gkIvl~~~-----------------~~~~~~~~~~Ga~g~i~~~~~~~  372 (667)
                      ...++|+.+.......|....+  .+++|||||+.+                 ..|..++.++||+|+|++++...
T Consensus        22 v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~   97 (137)
T cd04820          22 VEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS   97 (137)
T ss_pred             ceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence            4567888876655557886665  799999999986                 14889999999999999998653

A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt

>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1

Probab=95.87  E-value=0.021  Score=53.38  Aligned_cols=58  Identities=24%  Similarity=0.176  Sum_probs=45.9

Q ss_pred             CceeeEEEccCCCCCCCCCcccc--ccccccEEEEee-----------------------chhhHHHHhcCceEEEEecC
Q 038474          315 GKMFPLLYGKGVTNSSSCTEDYA--NLVKGNIVLCDE-----------------------FSGYHVAREAGAAGLILKDN  369 (667)
Q Consensus       315 ~~~~~lv~~~~~~~~~~C~~~~~--~~~~gkIvl~~~-----------------------~~~~~~~~~~Ga~g~i~~~~  369 (667)
                      ....++|+.+.......|....+  .+++|||||+.+                       ..|..+++++||+|+|++++
T Consensus        19 ~~~aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~   98 (142)
T cd04814          19 IKDAPLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHE   98 (142)
T ss_pred             ccceeeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeC
Confidence            34578888876554457887666  699999999964                       24889999999999999998


Q ss_pred             CCC
Q 038474          370 RLY  372 (667)
Q Consensus       370 ~~~  372 (667)
                      ...
T Consensus        99 ~~~  101 (142)
T cd04814          99 LAP  101 (142)
T ss_pred             CCc
Confidence            763

A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=94.54  E-value=0.14  Score=42.56  Aligned_cols=57  Identities=21%  Similarity=0.157  Sum_probs=38.0

Q ss_pred             eeEEEEEEEEecCCCC-eeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeec
Q 038474          585 FTIKFPRTVTNIGLPN-STYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKG  641 (667)
Q Consensus       585 ~~~~~~rtvtNvg~~~-~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~  641 (667)
                      .+.+++-+|+|-|... ...++++..|.|-++...|.++.--++|++++++++|+++.
T Consensus         5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~   62 (78)
T PF10633_consen    5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA   62 (78)
T ss_dssp             EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred             CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence            3688999999999765 55888999999999888998876449999999999999875

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2)

Probab=93.60  E-value=0.072  Score=49.92  Aligned_cols=34  Identities=24%  Similarity=0.240  Sum_probs=31.0

Q ss_pred             ccccccEEEEee-----chhhHHHHhcCceEEEEecCCC
Q 038474          338 NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRL  371 (667)
Q Consensus       338 ~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~  371 (667)
                      -+++|||||++.     ..|..+|++.||+|+|||.+..
T Consensus        37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~   75 (153)
T cd02131          37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC   75 (153)
T ss_pred             CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence            579999999986     7899999999999999999865

This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like

Probab=92.38  E-value=0.15  Score=51.36  Aligned_cols=51  Identities=25%  Similarity=0.196  Sum_probs=39.2

Q ss_pred             ceeeEEEccCCCCCCCCCcccc-------ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCC
Q 038474          316 KMFPLLYGKGVTNSSSCTEDYA-------NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLY  372 (667)
Q Consensus       316 ~~~~lv~~~~~~~~~~C~~~~~-------~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~  372 (667)
                      ...++||...      |....+       .+++|||||+++     .+|..+|+++||+|+|++++...
T Consensus        45 v~g~lVyvny------G~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d  107 (220)
T cd02121          45 VTAELVYANY------GSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPAD  107 (220)
T ss_pred             ceEEEEEcCC------CcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence            3567887763      433221       579999999986     46899999999999999998653

This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower

>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]

Probab=91.83  E-value=0.45  Score=52.11  Aligned_cols=58  Identities=19%  Similarity=0.264  Sum_probs=49.4

Q ss_pred             ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCC---------cccccccceEEeChhhHHHHHH
Q 038474          338 NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYN---------VSLILPFPASTVTPDKFNSIIH  395 (667)
Q Consensus       338 ~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~---------~~~~~~iP~~~i~~~~g~~l~~  395 (667)
                      .++++|++++.|     .+|+..++++||.++++.|+....         ......||+++|++++++.+..
T Consensus        92 ~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~  163 (541)
T KOG2442|consen   92 SKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNK  163 (541)
T ss_pred             ccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHh
Confidence            779999999998     899999999999999999995421         1233459999999999999986

>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A

Probab=91.55  E-value=1.7  Score=39.15  Aligned_cols=54  Identities=15%  Similarity=0.100  Sum_probs=39.3

Q ss_pred             EEEEEEEecCCCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecC
Q 038474          588 KFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGL  642 (667)
Q Consensus       588 ~~~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~  642 (667)
                      .++-+++|....+.+|++++..++|+++......+++ ++|++..+.|.+.++..
T Consensus        34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~   87 (118)
T PF11614_consen   34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPD   87 (118)
T ss_dssp             EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred             EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence            4777899999999999999999999999665588998 89999999999999763

>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2

Probab=87.40  E-value=1.3  Score=42.23  Aligned_cols=34  Identities=29%  Similarity=0.263  Sum_probs=29.2

Q ss_pred             ccccccEEEEee------------------------chhhHHHHhcCceEEEEecCCC
Q 038474          338 NLVKGNIVLCDE------------------------FSGYHVAREAGAAGLILKDNRL  371 (667)
Q Consensus       338 ~~~~gkIvl~~~------------------------~~~~~~~~~~Ga~g~i~~~~~~  371 (667)
                      .+++||||++..                        ..|...+.+.||.|+|++.+..
T Consensus        46 ~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~  103 (157)
T cd04821          46 LDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE  103 (157)
T ss_pred             CCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence            789999999984                        1388999999999999997754

A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt

>COG1470 Predicted membrane protein [Function unknown]

Probab=83.09  E-value=5.7  Score=43.78  Aligned_cols=68  Identities=15%  Similarity=0.062  Sum_probs=54.0

Q ss_pred             eEEEEEEEEecCCCCee-EEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEE
Q 038474          586 TIKFPRTVTNIGLPNST-YKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALV  653 (667)
Q Consensus       586 ~~~~~rtvtNvg~~~~t-Y~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~G~l~  653 (667)
                      ..++.-.+.|.|+.+-| -++++..|.|-++.|+|.++---++|+.+++.+|++++.....+-++=.|+
T Consensus       398 e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~  466 (513)
T COG1470         398 EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITIT  466 (513)
T ss_pred             cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEE
Confidence            57788889999987644 789999999999999999877669999999999999976433333444443

>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]

Probab=83.05  E-value=0.8  Score=53.93  Aligned_cols=82  Identities=30%  Similarity=0.364  Sum_probs=61.2

Q ss_pred             CCcccccCCCCCCCCCCCCCCCceeeCCccEEeeeCCCCCCCCCcCCccceeeEEEcccCCchhhhhcC-----------
Q 038474          428 APIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAAAW-----------  496 (667)
Q Consensus       428 ~~~~a~FSSrGPt~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~SGTSMAaPhVAa~-----------  496 (667)
                      ...+..+|||||+.  ||-+--.|.|||+.|-|. |...          ...-..|.|||||+|++++.           
T Consensus       451 p~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~t----------lq~~qLMNGTSMsSP~acG~IAllLSgLKa~  517 (1304)
T KOG1114|consen  451 PSNPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQYT----------LQNSQLMNGTSMSSPSACGAIALLLSGLKAQ  517 (1304)
T ss_pred             CCCccccccCCCCc--CCCcceEEecCCccccCC-chhh----------hhhhhhhCCcccCCccccchHHHHHHHHHhc
Confidence            34578999999999  999999999999988764 2211          12467899999999999921           


Q ss_pred             ------------CCcCCCC-C-CCcCcccccccCccCCCC
Q 038474          497 ------------PMNSSKN-T-QAEFAYGSGHINPVKATN  522 (667)
Q Consensus       497 ------------~i~~~~~-~-~~~~~~GaG~in~~~A~~  522 (667)
                                  ++.++.. . -.+|.||.|+|++.+|.+
T Consensus       518 ni~ytpysVrrAlenTa~~l~~id~faqG~GmlqVdkAyE  557 (1304)
T KOG1114|consen  518 NIPYTPYSVRRALENTATKLGDIDSFAQGQGMLQVDKAYE  557 (1304)
T ss_pred             CCCCcHHHHHHHHHhcccccCccchhccCcceeehhHHHH
Confidence                        1111222 1 277999999999999954

>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function

Probab=82.73  E-value=31  Score=31.30  Aligned_cols=68  Identities=18%  Similarity=0.194  Sum_probs=50.2

Q ss_pred             eEEEEEEEEecCCCCeeEEEEEec----CCce--------------------EEEEEcCEEEEeeCCcEEEEEEEEEeec
Q 038474          586 TIKFPRTVTNIGLPNSTYKARILQ----NSKI--------------------SVNVVPEVLSFRSLNEKKSFIVTVTGKG  641 (667)
Q Consensus       586 ~~~~~rtvtNvg~~~~tY~~~v~~----p~g~--------------------~v~v~P~~l~f~~~g~~~~~~Vt~~~~~  641 (667)
                      +.++.-+|+|.++...+|.+++..    ..|+                    -|++ |..+++ +++|++.++++++.+.
T Consensus        28 ~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~P~  105 (121)
T PF06030_consen   28 KQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKMPK  105 (121)
T ss_pred             EEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEcCC
Confidence            788999999999999999987632    1111                    1222 566888 8999999999999877


Q ss_pred             CCCCCeEEEEEEEE
Q 038474          642 LASGSIVSAALVWF  655 (667)
Q Consensus       642 ~~~~~~~~G~l~w~  655 (667)
                      ..-.+.+-|-|.+.
T Consensus       106 ~~f~G~ilGGi~~~  119 (121)
T PF06030_consen  106 KAFDGIILGGIYFS  119 (121)
T ss_pred             CCcCCEEEeeEEEE
Confidence            55556777777765

>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors

Probab=81.05  E-value=16  Score=32.76  Aligned_cols=67  Identities=16%  Similarity=0.088  Sum_probs=43.8

Q ss_pred             EEEEEEEEecCCCCeeEEEEEec---CC----ceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEE
Q 038474          587 IKFPRTVTNIGLPNSTYKARILQ---NS----KISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWF  655 (667)
Q Consensus       587 ~~~~rtvtNvg~~~~tY~~~v~~---p~----g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~G~l~w~  655 (667)
                      .+.+.+|+|-|+.+..+.+.+..   ..    .-.+.|+|..+.+ ++|+++.++| +.....+.+.-..=+|.+.
T Consensus        16 ~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~   89 (122)
T PF00345_consen   16 RSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR   89 (122)
T ss_dssp             SEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred             CEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence            45667888998877777777664   11    1247799999999 8999999999 6643323333233344443

Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	667
3vta_A	621	Crystal Structure Of Cucumisin, A Subtilisin-Like E		1e-143
3i6s_A	649	Crystal Structure Of The Plant Subtilisin-Like Prot		2e-84
3eif_A	936	1.9 Angstrom Crystal Structure Of The Active Form O		3e-08
1wmd_A	434	Crystal Structure Of Alkaline Serine Protease Kp-43		9e-06
1wmf_A	434	Crystal Structure Of Alkaline Serine Protease Kp-43		1e-04
3afg_A	539	Crystal Structure Of Pron-Tk-Sp From Thermococcus K		2e-04

>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621

Iteration: 1
 Score =  506 bits (1304), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 293/637 (45%), Positives = 387/637 (60%), Gaps = 72/637 (11%)
Query: 79  TTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGK 138
           TTRSWDF+GF  ++ +R  VES+++VGV+DTGIWP+S SF DEGF P P KWKG C+   
Sbjct: 1   TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSN 60
Query: 139 NFTCNNKIIGARYYSF-----RDDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGM 193
           NF CN KIIGAR Y         D NG   D  GHG++TASTAAG  V  A+  G+G G 
Sbjct: 61  NFRCNRKIIGARSYHIGRPISPGDVNGPR-DTNGHGTHTASTAAGGLVSQANLYGLGLGT 119
Query: 194 ARGGVPSARISAYR--------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAI 245
           ARGGVP ARI+AY+           ILAA+DDAIADGVDII++S+G  +      D IAI
Sbjct: 120 ARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAI 179
Query: 246 GAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVR 305
           G+FHA+ +GILT NSAGN GP    T+S++PWL+SVAAST DR FV +V +GNG++    
Sbjct: 180 GSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSF-QG 238
Query: 306 YSINAFTHKGKMFPLLYGKGVTN-------SSSCTEDYA--NLVKGNIVLCDEFSGYHVA 356
            SIN F +  + +PL+ G+ + N       S  CT+     NL+KG IV+C+   G H  
Sbjct: 239 VSINTFDN--QYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEF 296
Query: 357 REA--GAAGLILKDN-RLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNP 413
            ++  GAAG+++  N R Y  S   P P+S + P+   + +   Y           I +P
Sbjct: 297 FKSLDGAAGVLMTSNTRDYADS--YPLPSSVLDPNDLLATLRYIYS----------IRSP 344
Query: 414 QAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIE 473
            A I K++ I ++ AP+V SFSSRGPN+   D++KPDIS PGV ILAA+  +AP+     
Sbjct: 345 GATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVG---G 401
Query: 474 DERHVKYNIISGTSMACPH-------------------------AAAWPMNSSKNTQAEF 508
             R+  +NIISGTSM+CPH                           A PMN+  N QAEF
Sbjct: 402 IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEF 461
Query: 509 AYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDNSTCSKGSEKTSPK 568
           AYGSGH+NP+KA  PGLVY+A + DY+  LC  GY+   +R I+GD S C+ G+      
Sbjct: 462 AYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRV-W 520
Query: 569 DLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLSFRSLN 628
           DLNYPS    VS  ++F   F RT+T++    STY+A I     ++++V P VLSF  L 
Sbjct: 521 DLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLG 580
Query: 629 EKKSFIVTVTGKGLASGSIVSAALVWFDGSHIVRSPI 665
           ++KSF +TV  +G   G +VSA+LVW DG H VRSPI
Sbjct: 581 DRKSFTLTV--RGSIKGFVVSASLVWSDGVHYVRSPI 615

>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649

Iteration: 1
 Score =  310 bits (794), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 231/662 (34%), Positives = 341/662 (51%), Gaps = 95/662 (14%)
Query: 79  TTRSWDFMGFNES--ITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDG 136
           TT + DF+  N S  +     +  D+IV V+D+GIWP+S SF D+G    PK+WKG C  
Sbjct: 1   TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 137 GKNFT---CNNKIIGARYYS---FRDDGN-----GSAIDEEGHGSNTASTAAGNKVKDAS 185
           G  F    CN K+IGA Y++     +D        SA D +GHG++ AS  AGN  K  S
Sbjct: 61  GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVS 120
Query: 186 FLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIADGVDIITISLGDTSAVD 237
             G   G ARG  P AR++ Y+           ++AA D A+ADGVD+I+IS G    + 
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYG-YRFIP 179
Query: 238 LAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKVVLG 297
           L  D I+I +F AM KG+L   SAGN GP  G  ++ +PW++ VA+  TDR F   + LG
Sbjct: 180 LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLG 239
Query: 298 NGKTIV--VRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYANLV---KGNIVLCDEFSG 352
           NG  I     +   AF       P++Y K +++ SS  E+  + V   +  IV+CD+   
Sbjct: 240 NGLKIRGWSLFPARAFVRDS---PVIYNKTLSDCSS--EELLSQVENPENTIVICDDNGD 294
Query: 353 YH-----VAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNFLRS 407
           +      + R    A + + ++     S   P P   V   +   +I        N++++
Sbjct: 295 FSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVI--------NYVKN 346
Query: 408 SIILNPQAEI-LKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSP-L 465
           S+   P A I  + + +    AP+VA+ S+RGP++    I KPDI APGV ILAAY P +
Sbjct: 347 SV--TPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNV 404
Query: 466 APISRDIEDERHVKYNIISGTSMACPHAAA-----------W------------------ 496
              S          Y + SGTSMA PHAA            W                  
Sbjct: 405 FATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDN 464
Query: 497 ---PMNSSKNTQA--EFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTI 551
              P+  S N +A      G+GH++P +A +PGLVY+A  QDY+N+LCS+ +  ++ +TI
Sbjct: 465 TRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTI 524
Query: 552 SGDNST--CSKGSEKTSPKDLNYPSMAAQVSSGESFTI---KFPRTVTNIGLPNSTYKAR 606
           +  +++  CS  S      DLNYPS  A  S   +FT+   KF RTVTN+G   +TYKA+
Sbjct: 525 ARSSASHNCSNPSA-----DLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAK 579
Query: 607 ILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFD--GSHIVRSP 664
           +      +++V P++L F++ NEK+S+ +T+   G    S    ++ W +  G+H VRSP
Sbjct: 580 LKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSP 639
Query: 665 IV 666
           IV
Sbjct: 640 IV 641

>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 169/398 (42%), Gaps = 94/398 (23%)
Query: 142 CNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGN---KVKDASFLGIGQGMARGGV 198
            N+K+  A Y+ +  DG  +A+D+E HG++ +   +GN   + K+   L        G +
Sbjct: 75  VNDKV--AYYHDYSKDGK-TAVDQE-HGTHVSGILSGNAPSETKEPYRL-------EGAM 123
Query: 199 PSARISAYRGEKI----------LAAFDDAIADGVDIITISLGDTSAVDLAH--DVIAIG 246
           P A++   R E +            A  DA+  G  +I +S G+ +A+  A+  D     
Sbjct: 124 PEAQLLLMRVEIVNGLADYARNYAQAIRDAVNLGAKVINMSFGN-AALAYANLPDETKKA 182
Query: 247 AFHAMTKGILTVNSAGNNG-------------PKAGF--TSSIAPWLMSVAASTTDRLFV 291
             +A +KG+  V SAGN+              P  G   T + A   ++VA+ + D+   
Sbjct: 183 FDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLT 242
Query: 292 DKVVLGNGKTIVVRYSINAFTHKGKMFPLL----------YGKGVTNSSSCTEDYANLVK 341
           +              ++    H+ K  P+L          Y     N     +D+ + VK
Sbjct: 243 ETA------------TVKTDDHQAKEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKD-VK 289
Query: 342 GNIVLCD----EFSGYHV-AREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQ 396
           G I L +    +F      A++AGA G+++ DN+  +    +  P     P  F  I  +
Sbjct: 290 GKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQ--DKGFPIELPNVDQMPAAF--ISRK 345
Query: 397 FYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGV 456
              ++ +  + +I  N   ++L T+    SD  + + FSS G        +KPDI+APG 
Sbjct: 346 DGLLLKDNSKKTITFNATPKVLPTA----SDTKL-SRFSSWGLT--ADGNIKPDIAAPGQ 398
Query: 457 NILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA 494
           +IL++ +             + KY  +SGTSM+ P  A
Sbjct: 399 DILSSVA-------------NNKYAKLSGTSMSAPLVA 423

>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K) Length = 434

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMAC 490
           VA FSSRGP K     +KPD+ APG  IL+A S LAP S         KY  + GTSMA 
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDS-SFWANHDSKYAYMGGTSMAT 258
Query: 491 P 491
           P
Sbjct: 259 P 259

>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom) Length = 434

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMAC 490
           VA FSSRGP K     +KPD+ APG  IL+A S LAP S         KY    GTS A 
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDS-SFWANHDSKYAYXGGTSXAT 258
Query: 491 P 491
           P
Sbjct: 259 P 259

>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 29/114 (25%)
Query: 430 IVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMA 489
           ++  FSSRGP     + LKP++ APG  I+AA +    + + I D     Y    GT+MA
Sbjct: 308 VITDFSSRGPT--ADNRLKPEVVAPGNWIIAARASGTSMGQPINDY----YTAAPGTAMA 361
Query: 490 CPHAA-----------AWPMNSSK------------NTQAEFAYGSGHINPVKA 520
            PH A           +W  +  K            +  A+ AYG+G +N  KA
Sbjct: 362 TPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPDEIADIAYGAGRVNAYKA 415

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	667
3vta_A	621	Cucumisin; subtilisin-like fold, serine protease,	0.0
3i6s_A	649	Subtilisin-like protease; PA-domain, FN3-domain, h	1e-178
1xf1_A	926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	1e-109
1dbi_A	280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	1e-14
1dbi_A	280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	2e-07
1thm_A	279	Thermitase; hydrolase(serine protease); 1.37A {The	1e-14
1thm_A	279	Thermitase; hydrolase(serine protease); 1.37A {The	8e-08
3afg_A	539	Subtilisin-like serine protease; propeptide, therm	1e-13
3afg_A	539	Subtilisin-like serine protease; propeptide, therm	2e-13
4aks_A	360	PATG, thiazoline oxidase/subtilisin-like protease;	2e-13
4aks_A	360	PATG, thiazoline oxidase/subtilisin-like protease;	2e-08
3lxu_X	1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	2e-13
3lxu_X	1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	8e-13
1to2_E	281	Subtilisin BPN'; serine protease, hydrolase; HET:	2e-13
1to2_E	281	Subtilisin BPN'; serine protease, hydrolase; HET:	2e-11
1r0r_E	274	Subtilisin carlsberg; high resolution, serine prot	3e-13
1r0r_E	274	Subtilisin carlsberg; high resolution, serine prot	2e-11
1wmd_A	434	Protease; alpha-beta hydrolase fold, jelly-roll be	7e-13
1wmd_A	434	Protease; alpha-beta hydrolase fold, jelly-roll be	4e-11
2z2z_A	395	TK-subtilisin precursor; thermococcus kodakaraensi	1e-12
2z2z_A	395	TK-subtilisin precursor; thermococcus kodakaraensi	6e-08
1r6v_A	671	Subtilisin-like serine protease; sandwich domain,	2e-12
1r6v_A	671	Subtilisin-like serine protease; sandwich domain,	5e-08
2ixt_A	310	36KDA protease; serine protease, sphericase, subti	8e-12
2ixt_A	310	36KDA protease; serine protease, sphericase, subti	5e-11
1y9z_A	441	Alkaline serine protease; subtilisin-like alpha/be	1e-11
1y9z_A	441	Alkaline serine protease; subtilisin-like alpha/be	3e-05
1gci_A	269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	2e-11
1gci_A	269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	1e-10
2x8j_A	327	Intracellular subtilisin protease; hydrolase, seri	3e-11
2x8j_A	327	Intracellular subtilisin protease; hydrolase, seri	3e-09
2p4e_P	692	Proprotein convertase subtilisin/kexin type 9; pro	2e-10
2p4e_P	692	Proprotein convertase subtilisin/kexin type 9; pro	2e-06
2iy9_A	347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	5e-10
2iy9_A	347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	4e-06
2z30_A	320	TK-subtilisin; thermococcus kodakaraensis, hydrola	7e-09
2z30_A	320	TK-subtilisin; thermococcus kodakaraensis, hydrola	7e-08
3t41_A	471	Epidermin leader peptide processing serine protea;	7e-09
3t41_A	471	Epidermin leader peptide processing serine protea;	4e-07
3lpc_A	340	APRB2; protease, subtilase, virulence factor, hydr	1e-07
3lpc_A	340	APRB2; protease, subtilase, virulence factor, hydr	5e-07
1sh7_A	284	Extracellular subtilisin-like serine proteinase; c	6e-07
1sh7_A	284	Extracellular subtilisin-like serine proteinase; c	3e-06
2b6n_A	278	Proteinase K; S binding, substrate specificity, pr	7e-07
2b6n_A	278	Proteinase K; S binding, substrate specificity, pr	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3f7m_A	279	Alkaline serine protease VER112; verticillium psal	1e-06
3f7m_A	279	Alkaline serine protease VER112; verticillium psal	2e-04
2pwa_A	279	Proteinase K; structure, alanine boronic acid, hyd	2e-06
2pwa_A	279	Proteinase K; structure, alanine boronic acid, hyd	7e-04
2qtw_B	546	Proprotein convertase subtilisin/kexin type 9; cor	2e-06
2qtw_B	546	Proprotein convertase subtilisin/kexin type 9; cor	2e-05
4dzt_A	276	Aqualysin-1, aqualysin-I; serine protease, calcium	2e-06
4dzt_A	276	Aqualysin-1, aqualysin-I; serine protease, calcium	5e-05

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621

 Score =  563 bits (1452), Expect = 0.0
 Identities = 278/636 (43%), Positives = 375/636 (58%), Gaps = 66/636 (10%)

Query: 79  TTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGK 138
           TTRSWDF+GF  ++ +R  VES+++VGV+DTGIWP+S SF DEGF P P KWKG C+   
Sbjct: 1   TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSN 60

Query: 139 NFTCNNKIIGARYYS----FRDDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMA 194
           NF CN KIIGAR Y               D  GHG++TASTAAG  V  A+  G+G G A
Sbjct: 61  NFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTA 120

Query: 195 RGGVPSARISAYR--------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIG 246
           RGGVP ARI+AY+           ILAA+DDAIADGVDII++S+G  +      D IAIG
Sbjct: 121 RGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIG 180

Query: 247 AFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRY 306
           +FHA+ +GILT NSAGN GP    T+S++PWL+SVAAST DR FV +V +GNG++     
Sbjct: 181 SFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQG-- 238

Query: 307 SINAFTHKGKMFPLLYGK-------GVTNSSSCTED--YANLVKGNIVLCD-EFSGYHVA 356
            ++  T   + +PL+ G+         + S  CT+     NL+KG IV+C+  F  +   
Sbjct: 239 -VSINTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFF 297

Query: 357 REAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAE 416
           +    A  +L  +   + +   P P+S + P+   + +         ++ S    +P A 
Sbjct: 298 KSLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLATL--------RYIYSI--RSPGAT 347

Query: 417 ILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDER 476
           I K++ I ++ AP+V SFSSRGPN+   D++KPDIS PGV ILAA+  +AP+       R
Sbjct: 348 IFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVG---GIRR 404

Query: 477 HVKYNIISGTSMACPHAA-------------------------AWPMNSSKNTQAEFAYG 511
           +  +NIISGTSM+CPH                           A PMN+  N QAEFAYG
Sbjct: 405 NTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYG 464

Query: 512 SGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDNSTCSKGSEKTSPKDLN 571
           SGH+NP+KA  PGLVY+A + DY+  LC  GY+   +R I+GD S C+ G+      DLN
Sbjct: 465 SGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGN-TGRVWDLN 523

Query: 572 YPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLSFRSLNEKK 631
           YPS    VS  ++F   F RT+T++    STY+A I     ++++V P VLSF  L ++K
Sbjct: 524 YPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRK 583

Query: 632 SFIVTVTGKGLASGSIVSAALVWFDGSHIVRSPIVF 667
           SF +TV G     G +VSA+LVW DG H VRSPI  
Sbjct: 584 SFTLTVRGS--IKGFVVSASLVWSDGVHYVRSPITI 617

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649

 Score =  520 bits (1339), Expect = e-178
 Identities = 219/656 (33%), Positives = 329/656 (50%), Gaps = 83/656 (12%)

Query: 79  TTRSWDFMGFNES--ITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDG 136
           TT + DF+  N S  +     +  D+IV V+D+GIWP+S SF D+G    PK+WKG C  
Sbjct: 1   TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60

Query: 137 GKNFT---CNNKIIGARYYS--------FRDDGNGSAIDEEGHGSNTASTAAGNKVKDAS 185
           G  F    CN K+IGA Y++          +    SA D +GHG++ AS  AGN  K  S
Sbjct: 61  GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVS 120

Query: 186 FLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIADGVDIITISLGDTSAVD 237
             G   G ARG  P AR++ Y+           ++AA D A+ADGVD+I+IS G    + 
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGY-RFIP 179

Query: 238 LAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKVVLG 297
           L  D I+I +F AM KG+L   SAGN GP  G  ++ +PW++ VA+  TDR F   + LG
Sbjct: 180 LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLG 239

Query: 298 NGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDY-ANLVKGNIVLCDEFSGYHV- 355
           NG  I   +S+       +  P++Y K +++ SS          +  IV+CD+   +   
Sbjct: 240 NGLKIRG-WSLFPARAFVRDSPVIYNKTLSDCSSEELLSQVENPENTIVICDDNGDFSDQ 298

Query: 356 ---AREAGAAGLILKDNRLYNV-SLILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIIL 411
                 A     I          S   P P   V   +           ++N++++S  +
Sbjct: 299 MRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQ--------VINYVKNS--V 348

Query: 412 NPQAEILKTS-VIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISR 470
            P A I      +    AP+VA+ S+RGP++    I KPDI APGV ILAAY P    + 
Sbjct: 349 TPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATS 408

Query: 471 DIEDE-RHVKYNIISGTSMACPHAA-------------------------AWPMNSSKNT 504
              +      Y + SGTSMA PHAA                         A P+++++  
Sbjct: 409 IGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKP 468

Query: 505 QAE---------FAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDN 555
             +            G+GH++P +A +PGLVY+A  QDY+N+LCS+ +  ++ +TI+  +
Sbjct: 469 IKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSS 528

Query: 556 STCSKGSEKTSPKDLNYPSMAAQVSSGESFTI---KFPRTVTNIGLPNSTYKARILQNSK 612
           ++ +         DLNYPS  A  S   +FT+   KF RTVTN+G   +TYKA++     
Sbjct: 529 ASHNC---SNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKN 585

Query: 613 ISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWF--DGSHIVRSPIV 666
            +++V P++L F++ NEK+S+ +T+   G    S    ++ W   +G+H VRSPIV
Sbjct: 586 STISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIV 641

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926

 Score =  350 bits (898), Expect = e-109
 Identities = 113/600 (18%), Positives = 190/600 (31%), Gaps = 124/600 (20%)

Query: 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFT-------CNNKIIGARYY 152
           +  +V VID G     E++       A  + K   +  K           N+K+     Y
Sbjct: 17  AGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDY 76

Query: 153 SFRDDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR----- 207
           S     +G    ++ HG++ +   +GN    A           G +P A++   R     
Sbjct: 77  S----KDGKTAVDQEHGTHVSGILSGN----APSETKEPYRLEGAMPEAQLLLMRVEIVN 128

Query: 208 -----GEKILAAFDDAIADGVDIITISLG-DTSAVDLAHDVIAIGAFHAMTKGILTVNSA 261
                      A  DAI  G  +I +S G    A     D       +A +KG+  V SA
Sbjct: 129 GLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSA 188

Query: 262 GNNGPKAGFTSS---IAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKGKMF 318
           GN+    G T       P    V         +        K +     +     + K  
Sbjct: 189 GNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDKEM 248

Query: 319 PLLYGKGVTNSSS---------CTEDYANLVKGNIVLCDEFSGYHV-----AREAGAAGL 364
           P+L       + +           ED    VKG I L +            A++AGA G+
Sbjct: 249 PVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIAKAKKAGAVGV 308

Query: 365 ILKDNRLYNVSLILP----FPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEILKT 420
           ++ DN+     + LP     PA+ ++         +   ++ +  + +I  N        
Sbjct: 309 LIYDNQDKGFPIELPNVDQMPAAFIS--------RKDGLLLKDNPQKTITFNA-----TP 355

Query: 421 SVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKY 480
            V+  +    ++ FSS G        +KPDI+APG +IL++ +               KY
Sbjct: 356 KVLPTASGTKLSRFSSWGLT--ADGNIKPDIAAPGQDILSSVAN-------------NKY 400

Query: 481 NIISGTSMACPHAA---------------------------------AWPMNSSKNTQAE 507
             +SGTSM+ P  A                                 A  +         
Sbjct: 401 AKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYF 460

Query: 508 --FAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLR-TISGDNSTCSKGSEK 564
                G+G ++  KA+   +      +D  +    +    DK   T++  N +       
Sbjct: 461 SPRQQGAGAVDAKKASAATMYVTD--KDNTSSKVHLNNVSDKFEVTVNVHNKS------- 511

Query: 565 TSPKDLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLSF 624
             P++L Y +                     +    S  K  I  NS   V V  +   F
Sbjct: 512 DKPQELYYQATVQTDKVDGKHF----ALAPKVLYETSWQKITIPANSSKQVTVPIDASRF 567

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280

 Score = 74.1 bits (183), Expect = 1e-14
 Identities = 44/198 (22%), Positives = 66/198 (33%), Gaps = 50/198 (25%)

Query: 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGN 159
           S   + VIDTG+                    G    G +F                D +
Sbjct: 31  SGQEIAVIDTGVDYTHPDL------------DGKVIKGYDFV---------------DND 63

Query: 160 GSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGV-PSARISAYR---------GE 209
              +D   HG++ A  AA              G+A  G+ P+ RI A R           
Sbjct: 64  YDPMDLNNHGTHVAGIAAAET-------NNATGIA--GMAPNTRILAVRALDRNGSGTLS 114

Query: 210 KILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAG 269
            I  A   A   G ++I +SLG         + +     +A  KG + V +AGNNG    
Sbjct: 115 DIADAIIYAADSGAEVINLSLGCDCHTTTLENAVN----YAWNKGSVVVAAAGNNGSSTT 170

Query: 270 FTSSIAPWLMSVAASTTD 287
           F  +    +++V A    
Sbjct: 171 FEPASYENVIAVGAVDQY 188

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 39/108 (36%)

Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMAC 490
           +ASFS+ G           D+ APGV+I++  +               +Y  +SGTSMA 
Sbjct: 191 LASFSNYGT--------WVDVVAPGVDIVSTIT-------------GNRYAYMSGTSMAS 229

Query: 491 PHAA--------AWP---------MNSSKNTQAE-FAYGSGHINPVKA 520
           PH A                      ++         +  G IN   A
Sbjct: 230 PHVAGLAALLASQGRNNIEIRQAIEQTADKISGTGTYFKYGRINSYNA 277

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279

 Score = 73.3 bits (181), Expect = 1e-14
 Identities = 41/198 (20%), Positives = 66/198 (33%), Gaps = 50/198 (25%)

Query: 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGN 159
           S   + ++DTG+                    G   GG +F                D +
Sbjct: 30  SGAKIAIVDTGVQSNHPDL------------AGKVVGGWDFV---------------DND 62

Query: 160 GSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGV-PSARISAYR---------GE 209
            +  +  GHG++ A  AA              G+A  G  P A I A R           
Sbjct: 63  STPQNGNGHGTHCAGIAAAVT-------NNSTGIA--GTAPKASILAVRVLDNSGSGTWT 113

Query: 210 KILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAG 269
            +      A   G  +I++SLG T         +     +A  KG + V +AGN G  A 
Sbjct: 114 AVANGITYAADQGAKVISLSLGGTVGNSGLQQAVN----YAWNKGSVVVAAAGNAGNTAP 169

Query: 270 FTSSIAPWLMSVAASTTD 287
              +     ++VA++  +
Sbjct: 170 NYPAYYSNAIAVASTDQN 187

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279

 Score = 53.3 bits (129), Expect = 8e-08
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 21/65 (32%)

Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMAC 490
            +SFS+ G   +V      D++APG +I + Y                 Y  +SGTSMA 
Sbjct: 190 KSSFSTYGS--WV------DVAAPGSSIYSTY-------------PTSTYASLSGTSMAT 228

Query: 491 PHAAA 495
           PH A 
Sbjct: 229 PHVAG 233

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539

 Score = 73.4 bits (180), Expect = 1e-13
 Identities = 59/311 (18%), Positives = 105/311 (33%), Gaps = 73/311 (23%)

Query: 11  EGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMK------ 64
           E   +    +Q+  E+ VE        ++         A K+   ++  +AG+       
Sbjct: 35  EVSTIIMFDNQADKEKAVEILDFLGAKIKYNYHIIPALAVKIKVKDLLIIAGLMDTGYFG 94

Query: 65  -----GVVSVFPSRTLQLHTT-----RSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQ 114
                GV  +     +++         S   +             S + +G+IDTGI   
Sbjct: 95  NAQLSGVQFIQEDYVVKVAVETEGLDESAAQVMATNMWNLGYD-GSGITIGIIDTGIDAS 153

Query: 115 SESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTAS 174
                           +G   G  +F                +G  +  D+ GHG++ AS
Sbjct: 154 HPDL------------QGKVIGWVDFV---------------NGKTTPYDDNGHGTHVAS 186

Query: 175 TAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILA----AFDDAIAD 221
            AAG     A+  G  +GMA    P A++   +            I+     A  +    
Sbjct: 187 IAAGT---GAASNGKYKGMA----PGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKY 239

Query: 222 GVDIITISLG---DTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSS--IAP 276
           G+ +I +SLG    +   D     +     +A   G++ V +AGN+GP      S   A 
Sbjct: 240 GIKVINLSLGSSQSSDGTDSLSQAVN----NAWDAGLVVVVAAGNSGPNKYTVGSPAAAS 295

Query: 277 WLMSVAASTTD 287
            +++V A    
Sbjct: 296 KVITVGAVDKY 306

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539

 Score = 72.2 bits (177), Expect = 2e-13
 Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 29/127 (22%)

Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMAC 490
           +  FSSRGP     + LKP++ APG  I+AA          +    +  Y    GT+MA 
Sbjct: 309 ITDFSSRGP--TADNRLKPEVVAPGNWIIAAR----ASGTSMGQPINDYYTAAPGTAMAT 362

Query: 491 PHAA--------AWP-----------MNSSKN----TQAEFAYGSGHINPVKATNPGLVY 527
           PH A        A P           + ++        A+ AYG+G +N  KA       
Sbjct: 363 PHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPDEIADIAYGAGRVNAYKAAYYDNYA 422

Query: 528 EAFKQDY 534
           +     Y
Sbjct: 423 KLTFTGY 429

>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 33/211 (15%), Positives = 66/211 (31%), Gaps = 26/211 (12%)

Query: 97  TVESDLIVGVIDTGI-----------WPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNK 145
             +  + + +ID                +   +  E   P   +   A    ++     K
Sbjct: 46  LGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGK 105

Query: 146 IIGARYYSFRDDGNGSAIDEEGHGSNTASTAAG---NKV----KDASFLGIGQGMARGGV 198
                  +   D     I    H  +  ST  G   + V     +   + + Q     G 
Sbjct: 106 EKEEALEAVIPDTKD-RIVLNDHACHVTSTIVGQEHSPVFGIAPNCRVINMPQDAVIRGN 164

Query: 199 PSARISAYRGEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVI--AIGAFHAMTKGIL 256
               +S      +  A D A+  G +II  +    +      +++  AI         +L
Sbjct: 165 YDDVMSPLN---LARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIKK--CQDNNVL 219

Query: 257 TVNSAGNNGPKAGFTSSIAPWLMSVAASTTD 287
            V+  GNN  ++    ++ P  ++V A+  D
Sbjct: 220 IVSPTGNNSNESWCLPAVLPGTLAVGAAKVD 250

>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 17/65 (26%)

Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMAC 490
              FS+ G N       K  I APG  IL A     P +         +   ++GTSMA 
Sbjct: 253 PCHFSNWGGNNT-----KEGILAPGEEILGAQ----PCTE--------EPVRLTGTSMAA 295

Query: 491 PHAAA 495
           P    
Sbjct: 296 PVMTG 300

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354

 Score = 73.3 bits (179), Expect = 2e-13
 Identities = 36/210 (17%), Positives = 73/210 (34%), Gaps = 42/210 (20%)

Query: 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGN 159
           +D  + ++DT      +     G      + +   D             +   +  D+GN
Sbjct: 213 ADGWLTIVDTTEQGDLDQALRIGEYSRTHETRNVDDFL-----------SISVNVHDEGN 261

Query: 160 GSAI--DEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------- 207
              +      HG++ +S A+GN           + +  G  P+A+I +            
Sbjct: 262 VLEVVGMSSPHGTHVSSIASGN--------HSSRDVD-GVAPNAKIVSMTIGDGRLGSME 312

Query: 208 -GEKILAAFDDAI-----ADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSA 261
            G  ++ A    +        +D+I +S G+ +    +  +  +        G++ V SA
Sbjct: 313 TGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASA 372

Query: 262 GNNGPKAGFTSS----IAPWLMSVAASTTD 287
           GN+GP      +      P L+ V A  + 
Sbjct: 373 GNHGPALCTVGTPPDISQPSLIGVGAYVSP 402

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354

 Score = 71.0 bits (173), Expect = 8e-13
 Identities = 40/261 (15%), Positives = 68/261 (26%), Gaps = 60/261 (22%)

Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMAC 490
           V +++SR P           + APG  I +                  K  +++GTSMA 
Sbjct: 419 VYTWTSRDPCID--GGQGVTVCAPGGAIASVPQFTMS-----------KSQLMNGTSMAA 465

Query: 491 PHAA--------AWPMNSSKNTQAE-----------------FAYGSGHINPVKATNPGL 525
           PH A             + + +                    FA G G +N  KA     
Sbjct: 466 PHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVDPFAQGHGLLNVEKAFEHLT 525

Query: 526 VYEAFKQDYINMLCSMGYDVDKLRTISGDNSTCSKGSEKTSPKDLNYPSMAAQVSSGESF 585
            +   K + +     +G + D  + I           +                      
Sbjct: 526 EHRQSKDNMLRFSVRVGNNAD--KGIHLRQGVQRNSIDYN-----------------VYI 566

Query: 586 TIKFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASG 645
              F             +  R+   +          L        +S  V V   GL  G
Sbjct: 567 EPIFYNDKEADPKDKFNFNVRLNLIASQPWVQCGAFLD--LSYGTRSIAVRVDPTGLQPG 624

Query: 646 SIVSAALVWFDGSHIVRSPIV 666
              SA +  +D   + +  + 
Sbjct: 625 VH-SAVIRAYDTDCVQKGSLF 644

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281

 Score = 70.3 bits (173), Expect = 2e-13
 Identities = 44/202 (21%), Positives = 70/202 (34%), Gaps = 56/202 (27%)

Query: 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGN 159
           S++ V VID+GI                                 K+ G    S      
Sbjct: 24  SNVKVAVIDSGIDSSHPDL--------------------------KVAGG--ASMVPSET 55

Query: 160 GSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGV-PSARISAYR---------GE 209
               D   HG++ A T A         L    G+   GV PSA + A +           
Sbjct: 56  NPFQDNNSHGTHVAGTVAA--------LNNSIGVL--GVAPSASLYAVKVLGADGSGQYS 105

Query: 210 KILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAG 269
            I+   + AIA+ +D+I +SLG  S        +      A+  G++ V +AGN G    
Sbjct: 106 WIINGIEWAIANNMDVINMSLGGPSGSAALKAAVD----KAVASGVVVVAAAGNEGTSGS 161

Query: 270 FTS----SIAPWLMSVAASTTD 287
            ++       P +++V A  + 
Sbjct: 162 SSTVGYPGKYPSVIAVGAVDSS 183

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 32/109 (29%), Positives = 39/109 (35%), Gaps = 40/109 (36%)

Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMAC 490
            ASFSS GP        + D+ APGV+I +                  KY   +GTSMA 
Sbjct: 186 RASFSSVGP--------ELDVMAPGVSIQSTL-------------PGNKYGAYNGTSMAS 224

Query: 491 PHAA--------AWP-----------MNSSKNTQAEFAYGSGHINPVKA 520
           PH A          P            N++      F YG G IN   A
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLINVQAA 273

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274

 Score = 69.5 bits (171), Expect = 3e-13
 Identities = 42/202 (20%), Positives = 73/202 (36%), Gaps = 57/202 (28%)

Query: 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGN 159
           +++ V V+DTGI       +                GG +F                 G 
Sbjct: 24  ANVKVAVLDTGIQASHPDLNV--------------VGGASFV---------------AGE 54

Query: 160 GSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGV-PSARISAYR---------GE 209
               D  GHG++ A T A         L    G+   GV PS  + A +           
Sbjct: 55  AYNTDGNGHGTHVAGTVAA--------LDNTTGVL--GVAPSVSLYAVKVLNSSGSGSYS 104

Query: 210 KILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAG 269
            I++  + A  +G+D+I +SLG  S        +     +A  +G++ V +AGN+G    
Sbjct: 105 GIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVD----NAYARGVVVVAAAGNSGNSGS 160

Query: 270 FTSSI----APWLMSVAASTTD 287
             +         +++V A  ++
Sbjct: 161 TNTIGYPAKYDSVIAVGAVDSN 182

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 40/109 (36%)

Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMAC 490
            ASFSS G         + ++ APG  + + Y    P +          Y  ++GTSMA 
Sbjct: 185 RASFSSVGA--------ELEVMAPGAGVYSTY----PTNT---------YATLNGTSMAS 223

Query: 491 PHAA--------AWP-----------MNSSKNTQAEFAYGSGHINPVKA 520
           PH A          P            +++    + F YG G IN   A
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSFYYGKGLINVEAA 272

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434

 Score = 70.0 bits (171), Expect = 7e-13
 Identities = 56/291 (19%), Positives = 87/291 (29%), Gaps = 67/291 (23%)

Query: 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGN 159
              IV V DTG+                    G  D   +     KI         ++ N
Sbjct: 22  QGQIVAVADTGLDT------------------GRNDSSMHEAFRGKITALYALGRTNNAN 63

Query: 160 GSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-----GEK---- 210
               D  GHG++ A +  GN           +GMA    P A +         G      
Sbjct: 64  ----DTNGHGTHVAGSVLGNGST-------NKGMA----PQANLVFQSIMDSGGGLGGLP 108

Query: 211 --ILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKA 268
             +   F  A + G  I T S G         D   +  +      +  + +AGN GP  
Sbjct: 109 SNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDY-VRKNDMTILFAAGNEGPNG 167

Query: 269 GFTSS--IAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGV 326
           G  S+   A   ++V A+   R              V ++S    T  G++ P +   G 
Sbjct: 168 GTISAPGTAKNAITVGATENLRPSFGSYADNINH--VAQFSSRGPTKDGRIKPDVMAPGT 225

Query: 327 TNSSSCTEDYANLVKGNIVLCDEFSGY-----------HVAREAGAAGLIL 366
              S+     ++L   +    +  S Y            V   AG    + 
Sbjct: 226 FILSA----RSSLAPDSSFWANHDSKYAYMGGTSMATPIV---AGNVAQLR 269

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434

 Score = 64.6 bits (157), Expect = 4e-11
 Identities = 39/125 (31%), Positives = 47/125 (37%), Gaps = 30/125 (24%)

Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMAC 490
           VA FSSRGP K     +KPD+ APG  IL+A S LAP S         KY  + GTSMA 
Sbjct: 202 VAQFSSRGPTKD--GRIKPDVMAPGTFILSARSSLAPDS-SFWANHDSKYAYMGGTSMAT 258

Query: 491 PHAA--------AWPMNSSKNTQAE-------------------FAYGSGHINPVKATNP 523
           P  A         +  N     +                        G G +   K+ N 
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGYPNGNQGWGRVTLDKSLNV 318

Query: 524 GLVYE 528
             V E
Sbjct: 319 AYVNE 323

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 50/304 (16%), Positives = 83/304 (27%), Gaps = 65/304 (21%)

Query: 20  HQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQLHT 79
                   V G      +V  +K         +  + + KL  M GV  V       L  
Sbjct: 11  KAKFNPHEVLGIGGH--IVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLG 67

Query: 80  TRSWDFMGFNESITQR----------------RTVESDLIVGVIDTGIWPQSESFSDEGF 123
             SW   G  +                         S + V V+DTG+            
Sbjct: 68  KPSWLGGGSTQPAQTIPWGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDL----- 122

Query: 124 GPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGN---- 179
                          +                        D+ GHG++   T A      
Sbjct: 123 -------AANIAWCVSTLRGK----------VSTKLRDCADQNGHGTHVIGTIAALNNDI 165

Query: 180 --------------KVKDASFLGIGQGMARGG--VPSARISAYRGEKILAAFDDAIADGV 223
                         +V DA   G    +A G              +       D   D  
Sbjct: 166 GVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAA 225

Query: 224 DIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAA 283
           ++I++SLG  +     +D+I      A   GI+ V ++GN G  +    +  P +++V A
Sbjct: 226 EVISMSLGGPADDSYLYDMII----QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 281

Query: 284 STTD 287
             ++
Sbjct: 282 IDSN 285

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395

 Score = 54.4 bits (131), Expect = 6e-08
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 23/64 (35%)

Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMAC 490
           +ASFS+R P          ++SAPGV+IL+ Y    P            Y  + GT+MA 
Sbjct: 288 IASFSNRQP----------EVSAPGVDILSTY----PDD---------SYETLMGTAMAT 324

Query: 491 PHAA 494
           PH +
Sbjct: 325 PHVS 328

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671

 Score = 69.7 bits (170), Expect = 2e-12
 Identities = 36/202 (17%), Positives = 61/202 (30%), Gaps = 51/202 (25%)

Query: 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGN 159
           +++IV V+DTG+                   +G    G     +                
Sbjct: 154 TNIIVAVVDTGVDGTHPDL------------EGQVIAGYRPAFDE----------ELPAG 191

Query: 160 GSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR------------ 207
             +      G++ A T A            G+G+  G  P A+I                
Sbjct: 192 TDSSYGGSAGTHVAGTIAAK--------KDGKGIV-GVAPGAKIMPIVIFDDPALVGGNG 242

Query: 208 ---GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNN 264
               + + A    A   G  ++  S G         +       +AM  G++ V SAGNN
Sbjct: 243 YVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFD----YAMEHGVVMVVSAGNN 298

Query: 265 GPKAGFTS-SIAPWLMSVAAST 285
              +     +  P ++ VAA  
Sbjct: 299 TSDSHHQYPAGYPGVIQVAALD 320

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671

 Score = 55.1 bits (132), Expect = 5e-08
 Identities = 27/127 (21%), Positives = 39/127 (30%), Gaps = 35/127 (27%)

Query: 421 SVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHV-- 478
           ++        VA FSSR             + APGV IL+       I  +  +E     
Sbjct: 318 ALDYYGGTFRVAGFSSRSD--------GVSVGAPGVTILSTVPGEDSIGYEGHNENVPAT 369

Query: 479 ---KYNIISGTSMACPHAA--------AWP-----------MNSSKNTQAE---FAYGSG 513
               Y+   GTSMA PH           +P            N++ +          G G
Sbjct: 370 NGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWDHDTGYG 429

Query: 514 HINPVKA 520
            +    A
Sbjct: 430 LVKLDAA 436

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310

 Score = 65.8 bits (161), Expect = 8e-12
 Identities = 49/205 (23%), Positives = 74/205 (36%), Gaps = 52/205 (25%)

Query: 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGN 159
           S + + V+DTG+                       +  K+FT                 N
Sbjct: 26  SGINIAVLDTGVNTSHPDL------------VNNVEQCKDFTGAT-----------TPIN 62

Query: 160 GSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGV-PSARISAYR---------GE 209
            S  D  GHG++ A TA  +   D        G+   GV P A + AY+          +
Sbjct: 63  NSCTDRNGHGTHVAGTALADGGSD------QAGIY--GVAPDADLWAYKVLLDSGSGYSD 114

Query: 210 KILAAFDDAIADGV-----DIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNN 264
            I AA   A           II++SLG ++   L    +     +A +KG+L V +AGN+
Sbjct: 115 DIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVN----YAYSKGVLIVAAAGNS 170

Query: 265 GPKAGFTSS--IAPWLMSVAASTTD 287
           G   G        P  ++VAA    
Sbjct: 171 GYSQGTIGYPGALPNAIAVAALENV 195

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 17/68 (25%)

Query: 431 VASFSSRGP----NKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGT 486
           VA +SSRG       YV      +ISAPG ++ + +                 YN ISGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYN-------------GGYNTISGT 249

Query: 487 SMACPHAA 494
           SMA PH +
Sbjct: 250 SMATPHVS 257

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 61/425 (14%), Positives = 114/425 (26%), Gaps = 98/425 (23%)

Query: 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGN 159
            +  + +ID+G                          G N +                GN
Sbjct: 22  GNRTICIIDSGYDRSHNDL------------NANNVTGTNNS--------------GTGN 55

Query: 160 GS-AIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGV---PSARISAYR-------- 207
                +   HG++ A T A             +G+   GV    +A I   +        
Sbjct: 56  WYQPGNNNAHGTHVAGTIAAI--------ANNEGVV--GVMPNQNANIHIVKVFNEAGWG 105

Query: 208 -GEKILAAFDDAI-ADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNG 265
               ++AA D  + + G +++T+SLG + +     + +          G+L + +AGN G
Sbjct: 106 YSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALN----THYNNGVLLIAAAGNAG 161

Query: 266 PKAGFTSSIAPWLMSVAAST-TDRL--------FVDKVVLGNGKTIVVRYSINAFTHKGK 316
             +    +    +MSVAA                V+    G      V            
Sbjct: 162 DSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADITI 221

Query: 317 MFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSL 376
                +  GV   +  T    +     I      +         +       N++  V  
Sbjct: 222 GGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVER 281

Query: 377 ILPFPASTVTPDKFNSIIHQFYQVIM------NFLRSSIILNPQAEILKTSVIKDSDAPI 430
           +    +S    +   +      + I+           +  L      +    +    A  
Sbjct: 282 VGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATG 341

Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMAC 490
           +A  +  G +          +S  G                        Y   +GTSMA 
Sbjct: 342 LALKAKLGQS--------TTVSNQGNQ---------------------DYEYYNGTSMAT 372

Query: 491 PHAAA 495
           PH + 
Sbjct: 373 PHVSG 377

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 17/85 (20%), Positives = 22/85 (25%), Gaps = 17/85 (20%)

Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMAC 490
            A+FS       V      +IS PG  IL         S     E  +    I G S   
Sbjct: 186 HAAFSQYTD--QV------EISGPGEAIL---------STVTVGEGRLADITIGGQSYFS 228

Query: 491 PHAAAWPMNSSKNTQAEFAYGSGHI 515
                    +   T    A  +   
Sbjct: 229 NGVVPHNRLTPSGTSYAPAPINASA 253

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 44/198 (22%), Positives = 70/198 (35%), Gaps = 54/198 (27%)

Query: 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGN 159
           S + V V+DTGI    +                   GG +F                 G 
Sbjct: 24  SGVKVAVLDTGISTHPD-------------LNIR--GGASFV---------------PGE 53

Query: 160 GSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGV-PSARISAYR---------GE 209
            S  D  GHG++ A T A         L    G+   GV PSA + A +           
Sbjct: 54  PSTQDGNGHGTHVAGTIAA--------LNNSIGVL--GVAPSAELYAVKVLGASGSGSVS 103

Query: 210 KILAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAG 269
            I    + A  +G+ +  +SLG  S        +      A ++G+L V ++GN+G  + 
Sbjct: 104 SIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASGNSGAGSI 159

Query: 270 FTSSIAPWLMSVAASTTD 287
              +     M+V A+  +
Sbjct: 160 SYPARYANAMAVGATDQN 177

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 30/109 (27%), Positives = 39/109 (35%), Gaps = 40/109 (36%)

Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMAC 490
            ASFS  G           DI APGVN+ + Y                 Y  ++GTSMA 
Sbjct: 180 RASFSQYGA--------GLDIVAPGVNVQSTY-------------PGSTYASLNGTSMAT 218

Query: 491 PHAA--------AWP-----------MNSSKNTQAEFAYGSGHINPVKA 520
           PH A          P            N++ +  +   YGSG +N   A
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVNAEAA 267

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 44/208 (21%), Positives = 69/208 (33%), Gaps = 56/208 (26%)

Query: 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGN 159
           +  I+GVIDTG                         GG N T +                
Sbjct: 41  AGQIIGVIDTGCQVDHPDL------------AERIIGGVNLTTDY-----------GGDE 77

Query: 160 GSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEK 210
            +  D  GHG++ A T A            G G+  G  P A +   +            
Sbjct: 78  TNFSDNNGHGTHVAGTVAAA--------ETGSGVV-GVAPKADLFIIKALSGDGSGEMGW 128

Query: 211 ILAAFDDAI------ADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNN 264
           I  A   A+       + + IIT+SLG  +  +  HD +     +A++  +  V +AGN 
Sbjct: 129 IAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVSVVCAAGNE 184

Query: 265 GPKAGFTSSI-----APWLMSVAASTTD 287
           G     T+          +++V A   D
Sbjct: 185 GDGREDTNEFAYPAAYNEVIAVGAVDFD 212

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 21/64 (32%)

Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMAC 490
           ++ F++           + DI APGV I + Y                 Y  +SGT+MA 
Sbjct: 215 LSDFTNTNE--------EIDIVAPGVGIKSTY-------------LDSGYAELSGTAMAA 253

Query: 491 PHAA 494
           PH A
Sbjct: 254 PHVA 257

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692

 Score = 63.1 bits (153), Expect = 2e-10
 Identities = 37/292 (12%), Positives = 78/292 (26%), Gaps = 62/292 (21%)

Query: 17  SSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQ 76
               + +  +         IL   +     GF  K++   ++    +  V  +    ++ 
Sbjct: 92  ERTARRLQAQAARRGYLTKIL-HVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVF 150

Query: 77  LHTTRSW--DFMGFNESITQRRTVESD---LIVGVIDTGIWPQSESFSDEGFGPAPKKWK 131
             +   W  + +                  + V ++DT I            G       
Sbjct: 151 AQSI-PWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIE----GRVMVTDF 205

Query: 132 GACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKV---KDASFLG 188
                                      +  A   + HG++ A   +G      K AS   
Sbjct: 206 ENVPEEDG----------------TRFHRQASKCDSHGTHLAGVVSGRDAGVAKGASMRS 249

Query: 189 I----GQGMARGGVPSARISAYRGEKILAAFDDAIADGVD------IITISLG--DTSAV 236
           +     QG          +S       L   +      +       ++ + L    +  +
Sbjct: 250 LRVLNCQG-------KGTVSG-----TLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVL 297

Query: 237 DLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTS-SIAPWLMSVAASTTD 287
           + A              G++ V +AGN    A   S + AP +++V A+   
Sbjct: 298 NAA--CQR-----LARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQ 342

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 15/63 (23%)

Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
            +  + G N +   +   D+ APG +I+ A                  +   SGTS A  
Sbjct: 346 VTLGTLGTN-FGRCV---DLFAPGEDIIGAS----SDCST-------CFVSQSGTSQAAA 390

Query: 492 HAA 494
           H A
Sbjct: 391 HVA 393

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 31/192 (16%), Positives = 51/192 (26%), Gaps = 54/192 (28%)

Query: 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGN 159
           + ++V V+D+G+                     +     +FT +                
Sbjct: 44  TPVVVSVVDSGV----AFIGG---------LSDSEFAKFSFTQDGS----------PFPV 80

Query: 160 GSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR------------ 207
             +     HG+  AS  A              G+  G  P A IS+ R            
Sbjct: 81  KKSEALYIHGTAMASLIASRY-----------GIY-GVYPHALISSRRVIPDGVQDSWIR 128

Query: 208 GEKILAAFDDAIADGVDIITISLG---DTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNN 264
             + + +          II IS G     SA      +             L V + GN+
Sbjct: 129 AIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSR----MGRNNDRLIVAAVGND 184

Query: 265 GPKAGFTSSIAP 276
           G      S+   
Sbjct: 185 GADIRKLSAQQR 196

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 20/65 (30%)

Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMAC 490
             + S  G N         DI+APG NI        P +         K    SGTS A 
Sbjct: 236 GITGSRFGNNW-------VDIAAPGQNITFLR----PDA---------KTGTGSGTSEAT 275

Query: 491 PHAAA 495
              + 
Sbjct: 276 AIVSG 280

>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 36/213 (16%), Positives = 63/213 (29%), Gaps = 64/213 (30%)

Query: 104 VGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAI 163
           V V+DTG+                           +                        
Sbjct: 33  VAVLDTGVDYDHPDL------------AANIAWCVSTLRGK----------VSTKLRDCA 70

Query: 164 DEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAA 214
           D+ GHG++   T A         L    G+  G  P  +I + R            I   
Sbjct: 71  DQNGHGTHVIGTIAA--------LNNDIGVV-GVAPGVQIYSVRVLDARGSGSYSDIAIG 121

Query: 215 FDDAIAD--------------------GVDIITISLGDTSAVDLAHDVIAIGAFHAMTKG 254
            + AI                        ++I++SLG  +     +D+I      A   G
Sbjct: 122 IEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMII----QAYNAG 177

Query: 255 ILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTD 287
           I+ V ++GN G  +    +  P +++V A  ++
Sbjct: 178 IVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN 210

>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 23/65 (35%)

Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMAC 490
           +ASFS+R P          ++SAPGV+IL+ Y                 Y  + GT+MA 
Sbjct: 213 IASFSNRQP----------EVSAPGVDILSTY-------------PDDSYETLMGTAMAT 249

Query: 491 PHAAA 495
           PH + 
Sbjct: 250 PHVSG 254

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471

 Score = 57.6 bits (139), Expect = 7e-09
 Identities = 36/207 (17%), Positives = 60/207 (28%), Gaps = 45/207 (21%)

Query: 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGN 159
           ++  + +IDTG+    +                     KN    N   G        D +
Sbjct: 146 ANTKIAIIDTGVMKNHDDL-------KNNFST----DSKNLVPLNGFRGTE-PEETGDVH 193

Query: 160 GSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR--------GEKI 211
               D +GHG+  +   + N        G   G+A    P+ + + YR           +
Sbjct: 194 D-VNDRKGHGTMVSGQTSAN--------GKLIGVA----PNNKFTMYRVFGSKKTELLWV 240

Query: 212 LAAFDDAIADGVDIITISLGDTSAVDLAHDVIAIGAF------------HAMTKGILTVN 259
             A   A  DG  +I IS+G    +D                       +A  K  + V 
Sbjct: 241 SKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVA 300

Query: 260 SAGNNGPKAGFTSSIAPWLMSVAASTT 286
           +AGN+G        +            
Sbjct: 301 AAGNDGIDVNDKQKLKLQREYQGNGEV 327

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 16/74 (21%)

Query: 431 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHV---------KYN 481
           ++ FS+ G N         DI+APG +             +                +Y 
Sbjct: 349 LSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYI 401

Query: 482 IISGTSMACPHAAA 495
             +GT++A P  + 
Sbjct: 402 YQAGTALATPKVSG 415

>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 40/204 (19%), Positives = 62/204 (30%), Gaps = 20/204 (9%)

Query: 100 SDLIVGVIDTGIWP----QSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR 155
            +++V V+DTGI       +       F    +          +               R
Sbjct: 32  QNVVVAVVDTGILHHRDLNANVLPGYDFISNSQISLDGDGRDADPFDEGDWFDNWACGGR 91

Query: 156 DDGNGSAIDEEGHGSNTASTAAG---NKV------KDASFLGIGQGMARGGVPSARISAY 206
            D      D   HGS+ A T A    N++        A  + +      GG  S      
Sbjct: 92  PDPRKERSDSSWHGSHVAGTIAAVTNNRIGVAGVAYGAKVVPVRALGRCGGYDSDISDGL 151

Query: 207 R-GEKILAAFDDAIADGVDIITISLGDTSAVDLA-HDVIAIGAFHAMTKGILTVNSAGNN 264
                   A      +   +I +SLG           +I      A   G L V +AGN 
Sbjct: 152 YWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQTMID----RATRLGALVVVAAGNE 207

Query: 265 GPKAGFTS-SIAPWLMSVAASTTD 287
              A  T  +    ++SV A+T+ 
Sbjct: 208 NQNASNTWPTSCNNVLSVGATTSR 231

>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 14/64 (21%)

Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
           ASFS+ G +         D++APG +IL+                   Y+ ++GTSMA P
Sbjct: 235 ASFSNYGVD--------VDLAAPGQDILSTVDSGTRRPVSD------AYSFMAGTSMATP 280

Query: 492 HAAA 495
           H + 
Sbjct: 281 HVSG 284

>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 21/63 (33%)

Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
           +SFS+ G    V      D+ APG  I +A+                 Y  ISGTSMA P
Sbjct: 186 SSFSNWGS--CV------DLFAPGSQIKSAWY-------------DGGYKTISGTSMATP 224

Query: 492 HAA 494
           H A
Sbjct: 225 HVA 227

>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 58/196 (29%)

Query: 104 VGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAI 163
             VIDTG+    E F             G    G +F                D +  + 
Sbjct: 33  AYVIDTGVNNNHEEFG------------GRSVSGYDFV---------------DNDADSS 65

Query: 164 DEEGHGSNTASTAAGNKV---KDASFLGI----GQGMARGGVPSARISAYRGEKILAAFD 216
           D  GHG++ A T  G++    K+ + +G+      G       S   S      +++  D
Sbjct: 66  DCNGHGTHVAGTIGGSQYGVAKNVNIVGVRVLSCSG-------SGTTSG-----VISGVD 113

Query: 217 DAIADGV--DIITISLG--DTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTS 272
               +     +  +SLG   ++A+D A  V       A+  G+  + +AGN+   A  TS
Sbjct: 114 WVAQNASGPSVANMSLGGGQSTALDSA--VQG-----AIQSGVSFMLAAGNSNADACNTS 166

Query: 273 -SIAPWLMSVAASTTD 287
            +  P  ++V ++T+ 
Sbjct: 167 PARVPSGVTVGSTTSS 182

>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278

 Score = 50.3 bits (121), Expect = 7e-07
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 19/63 (30%)

Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
           +SFS+ G    +      DI APG +I +++      + +         N ISGTSMA P
Sbjct: 188 SSFSNYGT--CL------DIYAPGSSITSSW-----YTSN------SATNTISGTSMASP 228

Query: 492 HAA 494
           H A
Sbjct: 229 HVA 231

>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 42/194 (21%), Positives = 70/194 (36%), Gaps = 58/194 (29%)

Query: 106 VIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDE 165
           VIDTG+      F             G    G +F                D +  A D 
Sbjct: 37  VIDTGVLNTHNEFG------------GRASSGYDFI---------------DNDYDATDC 69

Query: 166 EGHGSNTASTAAGNKV---KDASFLGI----GQGMARGGVPSARISAYRGEKILAAFDDA 218
            GHG++ A T  G+     K+ + +G+      G       S   S      ++A  +  
Sbjct: 70  NGHGTHVAGTIGGSTYGVAKNVNVVGVRVLNCSG-------SGSNSG-----VIAGINWV 117

Query: 219 IADGV--DIITISLG--DTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTS-S 273
             +     +  +SLG   + A D A +        A+  GI  V +AGN+   A   S +
Sbjct: 118 KNNASGPAVANMSLGGGASQATDDAVN-------AAVAAGITFVVAAGNDNSNACNYSPA 170

Query: 274 IAPWLMSVAASTTD 287
            A   ++V ++T++
Sbjct: 171 RAADAITVGSTTSN 184

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 9e-07
 Identities = 68/506 (13%), Positives = 145/506 (28%), Gaps = 167/506 (33%)

Query: 206 YRGEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIA-------IGAFHAMTKG---I 255
           Y+ + IL+ F+DA  D  D   +        D+   +++       I +  A++      
Sbjct: 16  YQYKDILSVFEDAFVDNFDCKDVQ-------DMPKSILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 256 LTVNSAGNNGPKAGFTSSIAP---WLMS------VAASTTDRLFVDKV-VLGNGKTIVVR 305
            T+ S      +      +     +LMS         S   R+++++   L N   +  +
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 306 YSINAFTHKGKMFPLLY----------------GKGVTNSSSCTEDYANLVKGNIVLCDE 349
           Y+++      K+   L                 GK       C   Y       +    +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC-LSYK------VQCKMD 181

Query: 350 FSGY--HVAREAGAAGLILKDNRLYNV----SLILPFPASTVTPDKFNSIIHQFYQVIMN 403
           F  +  ++        ++    +L              +S +   + +SI  +  +++ +
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRLLKS 240

Query: 404 --FLRSSIIL------------NPQAEILKTSVIKDSDAPIVASFSSRGPNKYVP--DIL 447
             +    ++L            N   +IL T+  +      V  F S     ++      
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTT--RFKQ---VTDFLSAATTTHISLDHHS 295

Query: 448 KPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAAAWPMNSSKNTQAE 507
                    ++L  Y     +    +D                P                
Sbjct: 296 MTLTPDEVKSLLLKY-----LDCRPQDL---------------PREV------------- 322

Query: 508 FAYGSGHINPVKATNP---GLVYEAFKQ-----DYINMLCSMGYDVDKLRTISGDNSTCS 559
                        TNP    ++ E+ +      D          + DKL TI        
Sbjct: 323 -----------LTTNPRRLSIIAESIRDGLATWDNWKH-----VNCDKLTTI-------I 359

Query: 560 KGS-EKTSPKDL--NYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKARILQNSKISVN 616
           + S     P +    +          +  ++ FP +  +I  P       ++    I  +
Sbjct: 360 ESSLNVLEPAEYRKMF----------DRLSV-FPPSA-HI--PTILLS--LIWFDVIK-S 402

Query: 617 VVPEVLSF---RSLNEK--KSFIVTV 637
            V  V++     SL EK  K   +++
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISI 428

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 44/301 (14%), Positives = 84/301 (27%), Gaps = 116/301 (38%)

Query: 416 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGV-NILAAYSPLAPISRDIED 474
            + + + + + D             K V D+ K  +S   + +I+        +S+D   
Sbjct: 23  SVFEDAFVDNFDC------------KDVQDMPKSILSKEEIDHII--------MSKD-AV 61

Query: 475 ERHVKYNIISGTSMACPHAAAWPMNSSKNTQAEFAYGSGH-------INPVKATN--PGL 525
                  +             W + S +    +              ++P+K     P +
Sbjct: 62  SG--TLRLF------------WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107

Query: 526 VYEAFKQDYINMLCSMG-----YDV------DKLR------------TISGDNSTCSKGS 562
           +   +  +  + L +       Y+V       KLR             I G       GS
Sbjct: 108 MTRMY-IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV-----LGS 161

Query: 563 EKTSPKDLNYPSMAAQVSSGESFTIKFPRTV--TNIGL-------------------PNS 601
            KT         +A  V        K    +   N+                     PN 
Sbjct: 162 GKTW--------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 602 TYKARILQNSKISVNVVPEVLS--FRSLNEKKSFIVTVTGKGLASGSIVSAALVW--FDG 657
           T ++    N K+ ++ +   L    +S   +   +V      L +   V  A  W  F+ 
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV------LLN---VQNAKAWNAFNL 264

Query: 658 S 658
           S
Sbjct: 265 S 265

>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 21/63 (33%)

Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
           ++FS+ G    V      DI APG +I + +                + N ISGTSMA P
Sbjct: 191 STFSNYGRV--V------DIFAPGTSITSTWI-------------GGRTNTISGTSMATP 229

Query: 492 HAA 494
           H A
Sbjct: 230 HIA 232

>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 32/149 (21%)

Query: 152 YSFRDDGNGSAIDEEGHGSNTASTAAGNKV---KDASFLGIGQGMARGGVPSARISAYRG 208
            S+         D  GHG++ A T         K  S  G+      G   S  +S    
Sbjct: 58  KSYASTAR----DGHGHGTHCAGTIGSKTWGVAKKVSIFGVKVLDDSG---SGSLSN--- 107

Query: 209 EKILAAFDDAIADGVD-------IITISLG--DTSAVDLAHDVIAIGAFHAMTKGILTVN 259
             I+A  D   +D          + ++SLG   ++A++ A       A    + G+    
Sbjct: 108 --IIAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALNQA-------AARLQSSGVFVAV 158

Query: 260 SAGNNGPKAGFTS-SIAPWLMSVAASTTD 287
           +AGN+   A  TS +  P + +V A+ ++
Sbjct: 159 AAGNDNRDAANTSPASEPTVCTVGATDSN 187

>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 21/63 (33%)

Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
           +SFS+ G    +      DI  PG +IL+ +                    ISGTSMA P
Sbjct: 190 SSFSNYGSV--L------DIFGPGTDILSTWI-------------GGSTRSISGTSMATP 228

Query: 492 HAA 494
           H A
Sbjct: 229 HVA 231

>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 45/195 (23%), Positives = 69/195 (35%), Gaps = 58/195 (29%)

Query: 106 VIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDE 165
           VIDTGI      F     G A  +        K +  ++            DGN      
Sbjct: 37  VIDTGIEASHPEFE----GRA--QM------VKTYYYSS-----------RDGN------ 67

Query: 166 EGHGSNTASTAAGNKV---KDASFLGIGQGMARGGVPSARISAYRGEKILAAFDDAIADG 222
            GHG++ A T         K     G+      G   S + S      I+A  D   +D 
Sbjct: 68  -GHGTHCAGTVGSRTYGVAKKTQLFGVKVLDDNG---SGQYST-----IIAGMDFVASDK 118

Query: 223 VD-------IITISLG--DTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTS- 272
            +       + ++SLG   +S+V+ A       A    + G++   +AGNN   A   S 
Sbjct: 119 NNRNCPKGVVASLSLGGGYSSSVNSA-------AARLQSSGVMVAVAAGNNNADARNYSP 171

Query: 273 SIAPWLMSVAASTTD 287
           +  P + +V AS   
Sbjct: 172 ASEPSVCTVGASDRY 186

>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 15/63 (23%)

Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
            +  + G N +   +   D+ APG +I+ A                  +   SGTS A  
Sbjct: 194 VTLGTLGTN-FGRCV---DLFAPGEDIIGAS----SDCST-------CFVSQSGTSQAAA 238

Query: 492 HAA 494
           H A
Sbjct: 239 HVA 241

>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 30/198 (15%), Positives = 54/198 (27%), Gaps = 55/198 (27%)

Query: 106 VIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDE 165
           ++DT I            G                                  +  A   
Sbjct: 32  LLDTSIQSDHREIE----GRVMVTDFENVPEEDG----------------TRFHRQASKC 71

Query: 166 EGHGSNTASTAAGNKV---KDASFLGI----GQGMARGGVPSARISAYRGEKILAAFDDA 218
           + HG++ A   +G      K AS   +     QG          +S       L   +  
Sbjct: 72  DSHGTHLAGVVSGRDAGVAKGASMRSLRVLNCQG-------KGTVSG-----TLIGLEFI 119

Query: 219 IAD------GVDIITISLG--DTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGF 270
                    G  ++ + L    +  ++ A              G++ V +AGN    A  
Sbjct: 120 RKSQLVQPVGPLVVLLPLAGGYSRVLNAACQ-------RLARAGVVLVTAAGNFRDDACL 172

Query: 271 TS-SIAPWLMSVAASTTD 287
            S + AP +++V A+   
Sbjct: 173 YSPASAPEVITVGATNAQ 190

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 19/63 (30%)

Query: 432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACP 491
           ASFS+ G    V      D+ APG +I +A+      + D           ++GTSMA P
Sbjct: 186 ASFSNYGS--CV------DLFAPGASIPSAW-----YTSD------TATQTLNGTSMATP 226

Query: 492 HAA 494
           H A
Sbjct: 227 HVA 229

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276

 Score = 44.5 bits (106), Expect = 5e-05
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 34/148 (22%)

Query: 152 YSFRDDGNGSAIDEEGHGSNTASTAAGNKV---KDASFLGI----GQGMARGGVPSARIS 204
           Y           D  GHG++ A T  G      K  +   +      G       S   S
Sbjct: 57  YDALGGNGQ---DCNGHGTHVAGTIGGVTYGVAKAVNLYAVRVLDCNG-------SGSTS 106

Query: 205 AYRGEKILAAFDDAIADGVD--IITISLG--DTSAVDLAHDVIAIGAFHAMTKGILTVNS 260
                 ++A  D    +     +  +SLG   ++A+D A         +++  G++   +
Sbjct: 107 G-----VIAGVDWVTRNHRRPAVANMSLGGGVSTALDNAVK-------NSIAAGVVYAVA 154

Query: 261 AGNNGPKAGFTS-SIAPWLMSVAASTTD 287
           AGN+   A   S +     ++V A+T+ 
Sbjct: 155 AGNDNANACNYSPARVAEALTVGATTSS 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	667
3i6s_A	649	Subtilisin-like protease; PA-domain, FN3-domain, h	100.0
3vta_A	621	Cucumisin; subtilisin-like fold, serine protease,	100.0
1xf1_A	926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	100.0
3afg_A	539	Subtilisin-like serine protease; propeptide, therm	100.0
2z2z_A	395	TK-subtilisin precursor; thermococcus kodakaraensi	100.0
3t41_A	471	Epidermin leader peptide processing serine protea;	100.0
2p4e_P	692	Proprotein convertase subtilisin/kexin type 9; pro	100.0
1r6v_A	671	Subtilisin-like serine protease; sandwich domain,	100.0
1y9z_A	441	Alkaline serine protease; subtilisin-like alpha/be	100.0
4h6x_A	357	Thiazoline oxidase/subtilisin-like protease; hydro	100.0
1dbi_A	280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	100.0
1thm_A	279	Thermitase; hydrolase(serine protease); 1.37A {The	100.0
1r0r_E	274	Subtilisin carlsberg; high resolution, serine prot	100.0
1gci_A	269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	100.0
1to2_E	281	Subtilisin BPN'; serine protease, hydrolase; HET:	100.0
2x8j_A	327	Intracellular subtilisin protease; hydrolase, seri	100.0
1wmd_A	434	Protease; alpha-beta hydrolase fold, jelly-roll be	100.0
3lxu_X	1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	100.0
2iy9_A	347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	100.0
3zxy_A	282	Subtilisin-like protein; hydrolase; 1.58A {Prochlo	100.0
2ixt_A	310	36KDA protease; serine protease, sphericase, subti	100.0
4h6w_A	306	N-terminal cyanobactin protease; hydrolase; 2.45A	100.0
2z30_A	320	TK-subtilisin; thermococcus kodakaraensis, hydrola	100.0
3lpc_A	340	APRB2; protease, subtilase, virulence factor, hydr	100.0
1sh7_A	284	Extracellular subtilisin-like serine proteinase; c	100.0
2oxa_A	600	Extracellular serine protease; kexin, hydrolase; 1	100.0
2b6n_A	278	Proteinase K; S binding, substrate specificity, pr	100.0
4dzt_A	276	Aqualysin-1, aqualysin-I; serine protease, calcium	100.0
2pwa_A	279	Proteinase K; structure, alanine boronic acid, hyd	100.0
1p8j_A	471	Furin precursor; prohormone convertase, SPC1, PACE	100.0
3f7m_A	279	Alkaline serine protease VER112; verticillium psal	100.0
2qtw_B	546	Proprotein convertase subtilisin/kexin type 9; cor	100.0
2id4_A	503	Kexin; KEX2, kexin, furin, proprotein, prohormone,	100.0
3hjr_A	600	Extracellular serine protease; kexin, hydrolase; 1	100.0
1t1e_A	552	Kumamolisin; proenzyme, prosubtilase, activation m	99.82
1ga6_A	372	Serine-carboxyl proteinase; serine-carboxyl protei	99.68
2w2n_P	114	Proprotein convertase subtilisin/kexin type 9; hyd	99.0
3cnq_P	80	Subtilisin BPN'; uncleaved, proenzyme, substrate c	98.8
2qtw_A	124	Proprotein convertase subtilisin/kexin type 9 Pro;	98.56
3edy_A	544	Tripeptidyl-peptidase 1; protease, TPP1, sedolisin	98.48
1v5i_B	76	POIA1, IA-1=serine proteinase inhibitor; protease-	98.33
3icu_A	194	E3 ubiquitin-protein ligase RNF128; E3 ligase, ene	97.83
2z30_B	65	TK-subtilisin; thermococcus kodakaraensis, hydrola	97.2
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	95.75
2ek8_A	421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	94.5
3iib_A	444	Peptidase M28; YP_926796.1, structural genomics, J	93.79
3kas_A	640	Transferrin receptor protein 1; transferrin recept	92.96
3fed_A	707	Glutamate carboxypeptidase III; metallopeptidase,	92.74
3lxu_X	1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	90.44
1y9z_A	441	Alkaline serine protease; subtilisin-like alpha/be	88.23
2e6j_A	112	Hydin protein; PAPD, structural genomics, NPPSFA,	85.52
2r39_A	118	FIXG-related protein; structural GE PSI-2, protein	81.85
3qbt_B	140	Inositol polyphosphate 5-phosphatase OCRL-1; prote	81.04

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*

Probab=100.00  E-value=1.2e-118  Score=1027.61  Aligned_cols=569  Identities=39%  Similarity=0.655  Sum_probs=505.0

Q ss_pred             CCCCccccCCCh--hhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCc---cCCceeEeeeecc
Q 038474           79 TTRSWDFMGFNE--SITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNF---TCNNKIIGARYYS  153 (667)
Q Consensus        79 ~~~s~~~ig~~~--~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f---~~n~kiig~~~~~  153 (667)
                      |+++|+|+|++.  .+|..+++|+||+|||||||||++||+|.+.+++|+|.+|+|.|+.|.+|   .||+|++++++|.
T Consensus         1 Tt~s~~flgl~~~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig~~~f~   80 (649)
T 3i6s_A            1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFN   80 (649)
T ss_dssp             CCSHHHHTTCCSSSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEEEEECC
T ss_pred             CCCChHHcCCCCchhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceeeeEecc
Confidence            579999999973  59999999999999999999999999999999999999999999999988   6999999999996


Q ss_pred             CC--------CCCCCCCCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe--------chhHHHHHHH
Q 038474          154 FR--------DDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDD  217 (667)
Q Consensus       154 ~~--------~~~~~~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k--------~~~i~~a~~~  217 (667)
                      .+        ..+..+++|.+||||||||||||+.+++.+++|++.|.+.||||+|+|++||        .+++++||+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~Ai~~  160 (649)
T 3i6s_A           81 KGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQ  160 (649)
T ss_dssp             HHHHHHCTTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTEECHHHHHHHHHH
T ss_pred             CcccccccccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCCCCHHHHHHHHHH
Confidence            21        2345678999999999999999999888888999999999999999999999        5789999999


Q ss_pred             HHHCCCcEEEeCcCCCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEccccCCcceeeeEEeC
Q 038474          218 AIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKVVLG  297 (667)
Q Consensus       218 a~~~g~dVin~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~  297 (667)
                      |+++|+||||||||+. ...+..+++++++++|+++|++||+||||+|+...++++.+||+|+|||++.||.|...+.++
T Consensus       161 A~~~gvdVIn~SlG~~-~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~~~lg  239 (649)
T 3i6s_A          161 AVADGVDMISISYGYR-FIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLG  239 (649)
T ss_dssp             HHHTTCSEEEECCCCC-SCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEEEEET
T ss_pred             HHHcCCCEEEeCCccC-CcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceeeEEEeC
Confidence            9999999999999987 466788999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEeeeccCCCCceeeEEEccCCCCCCCCCcccc--ccc--cccEEEEee-----chhhHHHHhcCceEEEEec
Q 038474          298 NGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYA--NLV--KGNIVLCDE-----FSGYHVAREAGAAGLILKD  368 (667)
Q Consensus       298 ~~~~~~g~~s~~~~~~~~~~~~lv~~~~~~~~~~C~~~~~--~~~--~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~  368 (667)
                      +++.+.| .+++........+||++..   ....|.+..+  .++  +||||+|+|     .+|..+++++|+.|||++|
T Consensus       240 ng~~~~g-~sl~~~~~~~~~~plv~~~---~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n  315 (649)
T 3i6s_A          240 NGLKIRG-WSLFPARAFVRDSPVIYNK---TLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISE  315 (649)
T ss_dssp             TSCEEEE-ECCCSSCBCEEEEEEECCT---TTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECC
T ss_pred             CCcEEee-eecccCcccCcceeeEecc---cccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEec
Confidence            9999999 9998776667789999977   3348998887  555  999999998     6789999999999999999


Q ss_pred             CCCCCcccccccceEEeChhhHHHHHHhhhhchhhhhcccCCCCceEEE-eeeeeecCCCCCcccccCCCCCCCCCCCCC
Q 038474          369 NRLYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEI-LKTSVIKDSDAPIVASFSSRGPNKYVPDIL  447 (667)
Q Consensus       369 ~~~~~~~~~~~iP~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~i-~~~t~~~~~~~~~~a~FSSrGPt~~~~~~l  447 (667)
                      +........+.+|+++|+..++++|++        |++++  ++++++| +..+..+..+++.++.||||||+...+++|
T Consensus       316 ~~~~~~~~~~~~P~~~v~~~~g~~i~~--------yi~s~--~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~il  385 (649)
T 3i6s_A          316 DPGVFRSATFPNPGVVVNKKEGKQVIN--------YVKNS--VTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGIS  385 (649)
T ss_dssp             CGGGGGCCCCCSCEEEECHHHHHHHHH--------HHHTC--SSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSC
T ss_pred             CccccccccCcCCEEEEcHHHHHHHHH--------HHhcC--CCceEEEeecceeeccCCCCcccccCCCCCCCCCCCcc
Confidence            985445556779999999999999999        99999  9999999 888888888899999999999999778999


Q ss_pred             CCceeeCCccEEeeeCCCCCCCCCcCCc-cceeeEEEcccCCchhhhh-------------------------cCC----
Q 038474          448 KPDISAPGVNILAAYSPLAPISRDIEDE-RHVKYNIISGTSMACPHAA-------------------------AWP----  497 (667)
Q Consensus       448 KPDI~APG~~I~Sa~~~~~~~~~~~~~~-~~~~y~~~SGTSMAaPhVA-------------------------a~~----  497 (667)
                      ||||+|||++|+|+|+....++....+. +...|.+||||||||||||                         |.+    
T Consensus       386 KPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~  465 (649)
T 3i6s_A          386 KPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNT  465 (649)
T ss_dssp             SCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTT
T ss_pred             CCeEEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCC
Confidence            9999999999999999876554443333 4468999999999999999                         122    


Q ss_pred             ---CcCCC-C-CCCcCcccccccCccCCCCCCceeccChhhHHHhhhcCCCCccceeeecCCCCc--ccCCCCCCCCCCC
Q 038474          498 ---MNSSK-N-TQAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDNST--CSKGSEKTSPKDL  570 (667)
Q Consensus       498 ---i~~~~-~-~~~~~~~GaG~in~~~A~~pgLvyd~~~~dy~~flc~~~~~~~~i~~~~~~~~~--c~~~~~~~~~~~l  570 (667)
                         +.+.. . ++++|+||+|+|||.+|++||||||++.+||++|||++||+.++|+.|++++..  |++     .+.||
T Consensus       466 g~~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~~-----~~~~l  540 (649)
T 3i6s_A          466 RKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSN-----PSADL  540 (649)
T ss_dssp             SSBCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CCC-----CCCCC
T ss_pred             CCcccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCCcCCCCC-----chhhc
Confidence               22211 1 468999999999999999999999999999999999999999999999998888  975     36799


Q ss_pred             CCCcEEEee-cCCCcee--EEEEEEEEecCCCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCe
Q 038474          571 NYPSMAAQV-SSGESFT--IKFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSI  647 (667)
Q Consensus       571 Nypsi~~~~-~~~~~~~--~~~~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~  647 (667)
                      |||||++.+ +.+....  ++|+|||||||+.+++|+++++.|+|++|+|+|++|+|++.|||++|+|||+........|
T Consensus       541 NyPs~~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~~~~  620 (649)
T 3i6s_A          541 NYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSR  620 (649)
T ss_dssp             CCSSEEEEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC---CC
T ss_pred             CCCcEEeecccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEecccCCCce
Confidence            999999987 4431012  8999999999999999999999999999999999999988999999999999876555678


Q ss_pred             EEEEEEEEc--CCeEEEeeEEc
Q 038474          648 VSAALVWFD--GSHIVRSPIVF  667 (667)
Q Consensus       648 ~~G~l~w~~--~~h~vr~P~~v  667 (667)
                      .||+|+|+|  ++|.|||||+|
T Consensus       621 ~fg~l~w~~~~~~h~vrsPi~v  642 (649)
T 3i6s_A          621 NVGSITWVEQNGNHSVRSPIVT  642 (649)
T ss_dssp             CEEEEEEEETTSCCEEEEEEEE
T ss_pred             EEEEEEEEcCCCCeEEEEeEEE
Confidence            999999999  99999999986

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}

Probab=100.00  E-value=6.5e-112  Score=973.50  Aligned_cols=569  Identities=50%  Similarity=0.862  Sum_probs=477.6

Q ss_pred             CCCCccccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCC---
Q 038474           79 TTRSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR---  155 (667)
Q Consensus        79 ~~~s~~~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~---  155 (667)
                      |+++|+|+|+++.+|.++.+|+||+|||||||||++||+|.|.++++++.+|+|.|+.+.+|.||+|++++++|...   
T Consensus         1 tt~s~~flGl~~~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~~~n~k~ig~~~~~~~~~~   80 (621)
T 3vta_A            1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFRCNRKIIGARSYHIGRPI   80 (621)
T ss_dssp             CCSHHHHTTCCTTCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSCCCCSSEEEEEECCCSSSC
T ss_pred             CCCChhHcCCCccccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCcccCcceeeeeecccCCcc
Confidence            68999999998788999999999999999999999999999999999999999999999999999999999999642   


Q ss_pred             -CCCCCCCCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe--------chhHHHHHHHHHHCCCcEE
Q 038474          156 -DDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIADGVDII  226 (667)
Q Consensus       156 -~~~~~~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k--------~~~i~~a~~~a~~~g~dVi  226 (667)
                       ..+..+++|++||||||||||||+.+.+.+..|++.+.++||||+|+|++||        .+++++||++|+++|+|||
T Consensus        81 ~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~di~~a~~~a~~~g~dVi  160 (621)
T 3vta_A           81 SPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDII  160 (621)
T ss_dssp             CTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTEECHHHHHHHHHHHHHHTCSEE
T ss_pred             CCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCCCCHHHHHHHHHHHHHhCCCEE
Confidence             3455678999999999999999998888888888889999999999999999        6789999999999999999


Q ss_pred             EeCcCCCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEccccCCcceeeeEEeCCCeEEEEEE
Q 038474          227 TISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRY  306 (667)
Q Consensus       227 n~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~  306 (667)
                      |||||+.....+..+++++++++|+++||+||+||||+|+...++++.+||+++|++++.||.|...+.++++..+.+ .
T Consensus       161 n~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~~~~~~~~~~~~~-~  239 (621)
T 3vta_A          161 SLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQG-V  239 (621)
T ss_dssp             EECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEEEEEETTSCEEEE-B
T ss_pred             EecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccccceeeEEeccCceeee-e
Confidence            999998855667788999999999999999999999999999999999999999999999999999999999999988 7


Q ss_pred             eeeccCCCCceeeEEEccCCCCCC-------CCCcccc--ccccccEEEEee--chhhHHHHhcCceEEEEecCCCCCcc
Q 038474          307 SINAFTHKGKMFPLLYGKGVTNSS-------SCTEDYA--NLVKGNIVLCDE--FSGYHVAREAGAAGLILKDNRLYNVS  375 (667)
Q Consensus       307 s~~~~~~~~~~~~lv~~~~~~~~~-------~C~~~~~--~~~~gkIvl~~~--~~~~~~~~~~Ga~g~i~~~~~~~~~~  375 (667)
                      ++...  ....++++.........       .|.+..+  .+++|||++|++  ..+..+.+.+|+.++|++++... ..
T Consensus       240 s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~~~~~~~~~~~~Ga~gvi~~~~~~~-~~  316 (621)
T 3vta_A          240 SINTF--DNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLDGAAGVLMTSNTRD-YA  316 (621)
T ss_dssp             CCCCS--CCEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSCCCHHHHHHHHTTCSEEEEECSCCS-SC
T ss_pred             ecccC--CCcccccccccccccccccccccccccccccccccccceEEEEecCCChhHHhhhhcceeEEEEEecCCC-cc
Confidence            76543  35667787776554322       6888777  889999999998  66778888999999999987654 34


Q ss_pred             cccccceEEeChhhHHHHHHhhhhchhhhhcccCCCCceEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceeeCC
Q 038474          376 LILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPG  455 (667)
Q Consensus       376 ~~~~iP~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~a~FSSrGPt~~~~~~lKPDI~APG  455 (667)
                      ..+.+|.+.++..++..++.        |+..+  ..+.++++..+.......+.++.||||||+...+++|||||+|||
T Consensus       317 ~~~~lP~~~v~~~~g~~i~~--------~~~~~--~~~~a~~~~~~~~~~~~~~~va~FSSrGP~~~~~~ilKPDI~APG  386 (621)
T 3vta_A          317 DSYPLPSSVLDPNDLLATLR--------YIYSI--RSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPG  386 (621)
T ss_dssp             CCCSSSEEEECHHHHHHHHH--------HHHHH--SSCCEEECCCEEEECTTCCCBCTTSCCCSCTTCTTSCSCCEEEEC
T ss_pred             cccccceEEECHHHHHHHHH--------HHhcc--CCcceEEecceEeccCCCCceeeecCCCCCCCCCCeeccccccCC
Confidence            55679999999999999999        99888  888888855555556778999999999999878999999999999


Q ss_pred             ccEEeeeCCCCCCCCCcCCccceeeEEEcccCCchhhhh-------------------------cCCCcCCCCCCCcCcc
Q 038474          456 VNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAA-------------------------AWPMNSSKNTQAEFAY  510 (667)
Q Consensus       456 ~~I~Sa~~~~~~~~~~~~~~~~~~y~~~SGTSMAaPhVA-------------------------a~~i~~~~~~~~~~~~  510 (667)
                      ++|+|+|+.......   ..+...|.+||||||||||||                         |.++.....++++|+|
T Consensus       387 ~~Ilsa~~~~~~~~~---~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~~~~~~~~~~~~  463 (621)
T 3vta_A          387 VEILAAWPSVAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAY  463 (621)
T ss_dssp             SSEEEECCSSSCBTT---BCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTTTCTTTHHHH
T ss_pred             cceEeecCccccccC---cCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCcccccCCCCCchhc
Confidence            999999987543322   334568999999999999999                         2333333347789999


Q ss_pred             cccccCccCCCCCCceeccChhhHHHhhhcCCCCccceeeecCCCCcccCCCCCCCCCCCCCCcEEEeecCCCceeEEEE
Q 038474          511 GSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDNSTCSKGSEKTSPKDLNYPSMAAQVSSGESFTIKFP  590 (667)
Q Consensus       511 GaG~in~~~A~~pgLvyd~~~~dy~~flc~~~~~~~~i~~~~~~~~~c~~~~~~~~~~~lNypsi~~~~~~~~~~~~~~~  590 (667)
                      |+|+|||.+|++||||||++.+||+.|||++||+..+|+.++++...|+.. ......|||||||++........+++|+
T Consensus       464 GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lN~pS~~v~~~~~~~~~~t~~  542 (621)
T 3vta_A          464 GSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSG-NTGRVWDLNYPSFGLSVSPSQTFNQYFN  542 (621)
T ss_dssp             TTCBCCHHHHSCCSEECCCCGGGCC------------------------------CGGGSCCSSEEEECCSSCCEEEEEE
T ss_pred             CCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccccccCCC-CcCcccccccccEEEEccCCCceEEEEE
Confidence            999999999999999999999999999999999999999999998889764 3455789999999997654334689999


Q ss_pred             EEEEecCCCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEEcCCeEEEeeEEc
Q 038474          591 RTVTNIGLPNSTYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFDGSHIVRSPIVF  667 (667)
Q Consensus       591 rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~G~l~w~~~~h~vr~P~~v  667 (667)
                      |||||||...+||+++++.|+|++|+|+|++|+|++.|||++|+|||+..  ....++||+|+|+||+|.|||||+|
T Consensus       543 rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~--~~~~~~~g~l~w~d~~h~Vr~Pi~v  617 (621)
T 3vta_A          543 RTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS--IKGFVVSASLVWSDGVHYVRSPITI  617 (621)
T ss_dssp             EEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEEC--CCSSEEEEEEEEECSSCCCEEEEEE
T ss_pred             EEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEec--CCCceEEEEEEEEcCCEEEEeCEEE
Confidence            99999999999999999999999999999999999899999999999875  3578999999999999999999997

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*

Probab=100.00  E-value=2.3e-77  Score=713.45  Aligned_cols=493  Identities=21%  Similarity=0.257  Sum_probs=383.7

Q ss_pred             cccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCC-----------CC--ccCCceeEeee
Q 038474           84 DFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGG-----------KN--FTCNNKIIGAR  150 (667)
Q Consensus        84 ~~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g-----------~~--f~~n~kiig~~  150 (667)
                      ++++++ .+|+++++|+||+|||||||||++||+|.+      +..|++.|..+           ..  .+||+|+++++
T Consensus         2 d~i~~~-~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~------~~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~   74 (926)
T 1xf1_A            2 DPSQVK-TLQEKAGKGAGTVVAVIDAGFDKNHEAWRL------TDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYH   74 (926)
T ss_dssp             CTTCCH-HHHHHHCSCTTCEEEEEESCCTTCCCCCSC------CSCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEE
T ss_pred             CccccH-HHHhccCCCCCcEEEEEecCCCCCCHhHcC------CCCCcccccchhhhcccccccCcccccccCcccceee
Confidence            467888 899999999999999999999999999984      35676666432           11  26999999999


Q ss_pred             eccCCCCCCCCCCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe----------chhHHHHHHHHHH
Q 038474          151 YYSFRDDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR----------GEKILAAFDDAIA  220 (667)
Q Consensus       151 ~~~~~~~~~~~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k----------~~~i~~a~~~a~~  220 (667)
                      +|..+    ....|..||||||||||||+...+.+.    .+.+.||||+|+|++||          ..++++||++|++
T Consensus        75 ~~~~~----~~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~~~~~~~i~~Ai~~Ai~  146 (926)
T 1xf1_A           75 DYSKD----GKTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAIN  146 (926)
T ss_dssp             ESCCC----SCCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCHHHHHHHHHHHHHHHHH
T ss_pred             ccccC----CCCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCCCCcHHHHHHHHHHHHH
Confidence            99643    122289999999999999987544322    13458999999999999          2478999999999


Q ss_pred             CCCcEEEeCcCCCCC-CCChhhHHHHHHHHhhcCCeEEEEecCCCCCC-------------CCCc--CCCCCceEEEccc
Q 038474          221 DGVDIITISLGDTSA-VDLAHDVIAIGAFHAMTKGILTVNSAGNNGPK-------------AGFT--SSIAPWLMSVAAS  284 (667)
Q Consensus       221 ~g~dVin~SlG~~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~-------------~~~~--~~~~p~vitVgA~  284 (667)
                      +|+||||||||+... .....++++.++++|.++|++||+||||+|+.             ..++  ++.+||+|+|||+
T Consensus       147 ~gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vitVgA~  226 (926)
T 1xf1_A          147 LGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASY  226 (926)
T ss_dssp             TTCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSEEEEEE
T ss_pred             hCCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceEEEecc
Confidence            999999999998632 33456788999999999999999999999963             2223  3348999999999


Q ss_pred             cCCcceeeeEEe-CCCeEEEEEEeeecc-CC-CCceeeEEEccCCCCCCCCCccccccccccEEEEee-----chhhHHH
Q 038474          285 TTDRLFVDKVVL-GNGKTIVVRYSINAF-TH-KGKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDE-----FSGYHVA  356 (667)
Q Consensus       285 ~~d~~~~~~~~~-~~~~~~~g~~s~~~~-~~-~~~~~~lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~-----~~~~~~~  356 (667)
                      +.++.|...+.+ +++....+ .++... .+ ....+++++...     .|.+..+.+++||||||+|     .+|..++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lv~~~~-----g~~~~~~~~v~Gkivl~~rg~~~~~~k~~~~  300 (926)
T 1xf1_A          227 SPDKQLTETVRVKTADQQDKE-MPVLSTNRFEPNKAYDYAYANR-----GTKEDDFKDVKGKIALIERGDIDFKDKIAKA  300 (926)
T ss_dssp             BCSEEEEEEEEEECTTSCEEE-EEEEEESCCCTTCCEEEEECTT-----SCSTTTTTTCTTSEEEEECCSSCHHHHHHHH
T ss_pred             ccccccccceEEEcCCCccee-eEEEecCCCCCCceEEEEECCC-----CCCccchhhcCCeEEEEECCCCCHHHHHHHH
Confidence            999999988887 55544444 444322 12 356799998765     4776666899999999998     6788999


Q ss_pred             HhcCceEEEEecCCCCCc----ccccccceEEeChhhHHHHHHhhhhchhhhhcccCCCCceEEE-eeeeeecCCCCCcc
Q 038474          357 REAGAAGLILKDNRLYNV----SLILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEI-LKTSVIKDSDAPIV  431 (667)
Q Consensus       357 ~~~Ga~g~i~~~~~~~~~----~~~~~iP~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~i-~~~t~~~~~~~~~~  431 (667)
                      +++||+|+|++++.....    .....+|++.|+..++.+|++            .  ...++++ .....+.....+.+
T Consensus       301 ~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~------------~--~~~ti~~~~~~~~~~~~~~~~~  366 (926)
T 1xf1_A          301 KKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD------------N--PQKTITFNATPKVLPTASGTKL  366 (926)
T ss_dssp             HHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH------------C--SSCEEEECSSCEEEECSSCSBC
T ss_pred             HhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh------------C--CceEEEecccceecccCCccee
Confidence            999999999999875432    234569999999999998776            1  2333333 12233555668899


Q ss_pred             cccCCCCCCCCCCCCCCCceeeCCccEEeeeCCCCCCCCCcCCccceeeEEEcccCCchhhhhc--CC------------
Q 038474          432 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAAA--WP------------  497 (667)
Q Consensus       432 a~FSSrGPt~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~SGTSMAaPhVAa--~~------------  497 (667)
                      +.||||||+.  ++++||||+|||++|+|+|+..             .|..||||||||||||+  .+            
T Consensus       367 a~FSSrGp~~--~~~lKPDI~APG~~I~sa~~~~-------------~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~  431 (926)
T 1xf1_A          367 SRFSSWGLTA--DGNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDM  431 (926)
T ss_dssp             CTTSCCCBCT--TSCBSCCEEEECCCEEESSSCS-------------SSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred             ccccCCCCCC--CCccCceEECCCCCEEeeccCC-------------cceecCccchhHHHHHHHHHHHHHHHhccCCCC
Confidence            9999999997  9999999999999999999763             69999999999999991  11            


Q ss_pred             --------Cc-----CCCC--------CCCcCcccccccCccCCCCCCceeccChhhHHHhhhcCCCCccceeeecCCCC
Q 038474          498 --------MN-----SSKN--------TQAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYDVDKLRTISGDNS  556 (667)
Q Consensus       498 --------i~-----~~~~--------~~~~~~~GaG~in~~~A~~pgLvyd~~~~dy~~flc~~~~~~~~i~~~~~~~~  556 (667)
                              |+     ++..        .+++++||+|+||+.+|++|++           |||..+++..          
T Consensus       432 sp~~~~~~Iks~L~~TA~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~----------  490 (926)
T 1xf1_A          432 TPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSS----------  490 (926)
T ss_dssp             HHHHHHHHHHHHHHHHSBCCEEGGGTEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCS----------
T ss_pred             CHHHHHHHHHHHHHhcCCCcccCCCCccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcc----------
Confidence                    11     1111        2467899999999999999965           6788765432          


Q ss_pred             cccCCCCCCCCCCCCCCcEEEeecCCCceeEEEEEEEEecCCC--CeeEEEEEec--CCceEEEEEcCEEEEeeC-----
Q 038474          557 TCSKGSEKTSPKDLNYPSMAAQVSSGESFTIKFPRTVTNIGLP--NSTYKARILQ--NSKISVNVVPEVLSFRSL-----  627 (667)
Q Consensus       557 ~c~~~~~~~~~~~lNypsi~~~~~~~~~~~~~~~rtvtNvg~~--~~tY~~~v~~--p~g~~v~v~P~~l~f~~~-----  627 (667)
                                       +|.+..+.   .+.+++|||||+|+.  ..+|++++..  |++..++|.|..|.|..+     
T Consensus       491 -----------------~i~l~~~~---~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv  550 (926)
T 1xf1_A          491 -----------------KVHLNNVS---DKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITI  550 (926)
T ss_dssp             -----------------CEEEEEEC---SEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEE
T ss_pred             -----------------eeeccccC---ccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEE
Confidence                             23333333   268899999999985  4678888875  779999999988877655     


Q ss_pred             --CcEEEEEEEEEeec--------CCCCCeEEEEEEEE--cCCeE-EEeeEEc
Q 038474          628 --NEKKSFIVTVTGKG--------LASGSIVSAALVWF--DGSHI-VRSPIVF  667 (667)
Q Consensus       628 --g~~~~~~Vt~~~~~--------~~~~~~~~G~l~w~--~~~h~-vr~P~~v  667 (667)
                        ||+++|+|||++..        +++..|+||+|+|+  ++.|. ||+||++
T Consensus       551 ~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~  603 (926)
T 1xf1_A          551 PANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIG  603 (926)
T ss_dssp             CTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEE
T ss_pred             CCCCEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEE
Confidence              99999999999751        34556899999999  56665 9999984

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}

Probab=100.00  E-value=1.1e-52  Score=473.71  Aligned_cols=328  Identities=26%  Similarity=0.392  Sum_probs=253.4

Q ss_pred             EEEEeCCCCCCCCCchhHHHHHHHHHhcCCCCcccEEEEecceeeEEEEEeCHHHHHHH-----------HcCCCeeEEE
Q 038474            2 YIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKL-----------AGMKGVVSVF   70 (667)
Q Consensus         2 yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~~~~L-----------~~~p~V~~v~   70 (667)
                      |||.|++...     ......+++.+      +.+++|+| ..|+||+++++.+++++|           +++|+|++|+
T Consensus        38 ~iV~~~~~~~-----~~~~~~~~~~~------g~~v~~~~-~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~  105 (539)
T 3afg_A           38 TIIMFDNQAD-----KEKAVEILDFL------GAKIKYNY-HIIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQ  105 (539)
T ss_dssp             EEEEESSHHH-----HHHHHHHHHHH------TCEEEEEC-SSSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEE
T ss_pred             EEEEECCCCC-----HHHHHHHHHhc------CCeEEEEe-eeeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEE
Confidence            8899876432     11222233333      35799999 479999999999999999           8999999999


Q ss_pred             cCcccccCCC-----CCccccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCce
Q 038474           71 PSRTLQLHTT-----RSWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNK  145 (667)
Q Consensus        71 ~~~~~~~~~~-----~s~~~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~k  145 (667)
                      ++..+++...     .....++++ .+|+.+++|+||+|||||||||++||+|.+                        +
T Consensus       106 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~G~gv~VaViDtGid~~Hpdl~~------------------------~  160 (539)
T 3afg_A          106 EDYVVKVAVETEGLDESAAQVMAT-NMWNLGYDGSGITIGIIDTGIDASHPDLQG------------------------K  160 (539)
T ss_dssp             ECCEEECC-----------CCBCS-CCBCCSCCCTTCEEEEEESBCCTTSGGGTT------------------------T
T ss_pred             ecccccccCccccCCccccccCcH-hHHhcCCCCCCcEEEEEecCCCCCChHHhC------------------------C
Confidence            9999887532     233456777 899999999999999999999999999963                        4


Q ss_pred             eEeeeeccCCCCCCCCCCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHH
Q 038474          146 IIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFD  216 (667)
Q Consensus       146 iig~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~  216 (667)
                      +++.++|..+   ...+.|++||||||||||+|....       ..|.+.||||+|+|+.+|         .++++++|+
T Consensus       161 i~~~~d~~~~---~~~~~D~~gHGThVAgiiag~~~~-------~~g~~~GvAp~A~l~~~kv~~~~g~~~~~~i~~ai~  230 (539)
T 3afg_A          161 VIGWVDFVNG---KTTPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVD  230 (539)
T ss_dssp             EEEEEETTTC---CSSCCBSSSHHHHHHHHHHCCCGG-------GTTTTCCSCTTCEEEEEECSCTTSEEEHHHHHHHHH
T ss_pred             EeeeEECCCC---CCCCCCCCCCHHHHHHHHhCcCcc-------CCCCEEEECCCCEEEEEEeecCCCCcCHHHHHHHHH
Confidence            5666777533   245778999999999999987422       123458999999999999         467999999


Q ss_pred             HHHHC----CCcEEEeCcCCCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCC--CcCCCCCceEEEccccCCcce
Q 038474          217 DAIAD----GVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAG--FTSSIAPWLMSVAASTTDRLF  290 (667)
Q Consensus       217 ~a~~~----g~dVin~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgA~~~d~~~  290 (667)
                      ||+++    |++|||||||... .....+.+..++.+++++|++||+||||+|+...  ..++.++++|+|||++.    
T Consensus       231 ~a~~~~~~~g~~Vin~SlG~~~-~~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~----  305 (539)
T 3afg_A          231 WAVQNKDKYGIKVINLSLGSSQ-SSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDK----  305 (539)
T ss_dssp             HHHHTHHHHTEEEEEECCCCCS-CCCSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEECT----
T ss_pred             HHHhhhhhcCCcEEEeCCCCCC-CCccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEeeecC----
Confidence            99986    8999999999873 2345678899999999999999999999998644  45677899999988541    


Q ss_pred             eeeEEeCCCeEEEEEEeeeccCCCCceeeEEEccCCCCCCCCCccccccccccEEEEeechhhHHHHhcCceEEEEecCC
Q 038474          291 VDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNR  370 (667)
Q Consensus       291 ~~~~~~~~~~~~~g~~s~~~~~~~~~~~~lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~~~~~~~~~~~Ga~g~i~~~~~  370 (667)
                                                                                                      
T Consensus       306 --------------------------------------------------------------------------------  305 (539)
T 3afg_A          306 --------------------------------------------------------------------------------  305 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcccccccceEEeChhhHHHHHHhhhhchhhhhcccCCCCceEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCc
Q 038474          371 LYNVSLILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPD  450 (667)
Q Consensus       371 ~~~~~~~~~iP~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~a~FSSrGPt~~~~~~lKPD  450 (667)
                                                                               .+.++.||||||+.  ++++|||
T Consensus       306 ---------------------------------------------------------~~~~a~fSs~Gp~~--~~~~kpd  326 (539)
T 3afg_A          306 ---------------------------------------------------------YDVITDFSSRGPTA--DNRLKPE  326 (539)
T ss_dssp             ---------------------------------------------------------TSCBCSSSCCCCCT--TCBCCCS
T ss_pred             ---------------------------------------------------------CcccccccCCCCCC--CCCCccc
Confidence                                                                     13567899999998  8999999


Q ss_pred             eeeCCccEEeeeCCCCCCCCCcCCccceeeEEEcccCCchhhhhc-------------------CCCcCCCC-C---CCc
Q 038474          451 ISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAAA-------------------WPMNSSKN-T---QAE  507 (667)
Q Consensus       451 I~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~SGTSMAaPhVAa-------------------~~i~~~~~-~---~~~  507 (667)
                      |+|||++|+++++.....    .+.....|..+|||||||||||+                   .++..+.. .   ...
T Consensus       327 i~APG~~I~s~~~~~~~~----~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~vk~~L~~tA~~~~~~~~~~  402 (539)
T 3afg_A          327 VVAPGNWIIAARASGTSM----GQPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPDEIAD  402 (539)
T ss_dssp             EEEECSSEEEECCTTCCC----SEECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSBCSSGGGCSB
T ss_pred             EecCcCCEEeeccCCCCC----CCCCcccccccCchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCCc
Confidence            999999999999764211    11112369999999999999992                   11111221 1   356


Q ss_pred             CcccccccCccCCCCCC
Q 038474          508 FAYGSGHINPVKATNPG  524 (667)
Q Consensus       508 ~~~GaG~in~~~A~~pg  524 (667)
                      +.||+|+||+.+|++..
T Consensus       403 ~~~G~G~vn~~~Al~~~  419 (539)
T 3afg_A          403 IAYGAGRVNAYKAAYYD  419 (539)
T ss_dssp             TTTBTCBCCHHHHHTGG
T ss_pred             cCccCCccCHHHHhhhc
Confidence            78999999999998853

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A

Probab=100.00  E-value=4.7e-48  Score=421.73  Aligned_cols=230  Identities=21%  Similarity=0.232  Sum_probs=181.8

Q ss_pred             EEEEeCCCCCCCCCchhHHHHHHHHHhcCCCCcccEEEEecceeeEEEEEeCHHHHHHHHcCCCeeEEEcCcccccCCC-
Q 038474            2 YIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQLHTT-   80 (667)
Q Consensus         2 yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~v~~~~~~~~~~~-   80 (667)
                      |||.|++...  .      +.+++.      .+.+++++|. .+++|+++++++++++|+++|+|++|+++..++++.. 
T Consensus         5 ~iV~~~~~~~--~------~~~~~~------~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~   69 (395)
T 2z2z_A            5 VIVSVDKAKF--N------PHEVLG------IGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKP   69 (395)
T ss_dssp             EEEEECTTTC--C------HHHHHH------TTCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECCEE
T ss_pred             EEEEECCCcc--H------HHHHHH------cCCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeecccCCC
Confidence            9999988642  1      122222      2457999995 5999999999999999999999999999998876432 


Q ss_pred             -------------CCc--cccCCChhhhccCCCCCC--cEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCC
Q 038474           81 -------------RSW--DFMGFNESITQRRTVESD--LIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCN  143 (667)
Q Consensus        81 -------------~s~--~~ig~~~~~w~~~~~G~g--v~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n  143 (667)
                                   ..|  +.++++ .+|+.+ +|+|  |+|||||||||++||+|.+                       
T Consensus        70 ~~~~~~~~~~~~~~~w~~~~i~~~-~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~-----------------------  124 (395)
T 2z2z_A           70 SWLGGGSTQPAQTIPWGIERVKAP-SVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAA-----------------------  124 (395)
T ss_dssp             CC------CCSCCCCHHHHHTTCG-GGGGTC-SSCCTTCEEEEEESCBCTTCTTTGG-----------------------
T ss_pred             CcccccccCccccCCcchhhcCHH-HHHhhc-CCCCCcEEEEEEcCCCCCCChhHhh-----------------------
Confidence                         223  235666 899998 9999  9999999999999999973                       


Q ss_pred             ceeEeeeeccCCCC--CCCCCCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHH
Q 038474          144 NKIIGARYYSFRDD--GNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKIL  212 (667)
Q Consensus       144 ~kiig~~~~~~~~~--~~~~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~  212 (667)
                       +++..++|..+..  ...++.|+.||||||||||+|.. +   ..|     +.||||+|+|+.+|         .++++
T Consensus       125 -~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~-n---~~g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~  194 (395)
T 2z2z_A          125 -NIAWCVSTLRGKVSTKLRDCADQNGHGTHVIGTIAALN-N---DIG-----VVGVAPGVQIYSVRVLDARGSGSYSDIA  194 (395)
T ss_dssp             -GEEEEEECGGGCCBCCHHHHBCSSSHHHHHHHHHHCCC-S---SSS-----CCCSSTTCEEEEEECSCTTSEEEHHHHH
T ss_pred             -ccccCccccCCcccCCCCCCCCCCCCHHHHHHHHHeec-C---CCc-----eEEECCCCEEEEEEEecCCCCccHHHHH
Confidence             2334444432110  01125688999999999999973 1   112     38999999999999         45799


Q ss_pred             HHHHHHHHC--------------------CCcEEEeCcCCCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcC
Q 038474          213 AAFDDAIAD--------------------GVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTS  272 (667)
Q Consensus       213 ~a~~~a~~~--------------------g~dVin~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~  272 (667)
                      ++|+||+++                    +++|||||||+..    ....+..++.++.++|++||+||||+|.....+|
T Consensus       195 ~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~P  270 (395)
T 2z2z_A          195 IGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA----DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYP  270 (395)
T ss_dssp             HHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBT
T ss_pred             HHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCC----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCc
Confidence            999999998                    9999999999872    2356777888899999999999999998877889


Q ss_pred             CCCCceEEEcccc
Q 038474          273 SIAPWLMSVAAST  285 (667)
Q Consensus       273 ~~~p~vitVgA~~  285 (667)
                      +..|++|+|||++
T Consensus       271 a~~~~vi~Vga~~  283 (395)
T 2z2z_A          271 AAYPEVIAVGAID  283 (395)
T ss_dssp             TTSTTEEEEEEEC
T ss_pred             cCCCCEEEEEEec
Confidence            9999999999864

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A

Probab=100.00  E-value=2.6e-47  Score=425.58  Aligned_cols=222  Identities=17%  Similarity=0.241  Sum_probs=170.6

Q ss_pred             cccEEEEecceeeEEEEEeCHHHHHHHHc-CCCeeEEEcCcccccCCCC-------------CccccCCCh--hhhccCC
Q 038474           34 ENILVRSYKRSFNGFAAKLTDHEIQKLAG-MKGVVSVFPSRTLQLHTTR-------------SWDFMGFNE--SITQRRT   97 (667)
Q Consensus        34 ~~~v~~~y~~~~ng~s~~l~~~~~~~L~~-~p~V~~v~~~~~~~~~~~~-------------s~~~ig~~~--~~w~~~~   97 (667)
                      +.++++.| ..|++|+++++++++++|++ +|+|++|+++..+++....             .|.+..+..  .+|+.++
T Consensus        65 g~~v~~~~-~~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~~~  143 (471)
T 3t41_A           65 SLNVVYNI-PELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDDLP  143 (471)
T ss_dssp             TCEEEEEE-GGGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGGCC
T ss_pred             CCEEEEec-CCccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccCcHHHHhccC
Confidence            45788898 55999999999999999999 9999999999988775432             344433322  6899999


Q ss_pred             CCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCC----CCCCCCCCCCCCCcchhh
Q 038474           98 VESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR----DDGNGSAIDEEGHGSNTA  173 (667)
Q Consensus        98 ~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~----~~~~~~~~D~~gHGThVA  173 (667)
                      +|+||+|||||||||++||+|.+.-       |.+.          ..++....|.+.    ..+...+.|..|||||||
T Consensus       144 ~G~gv~VaViDtGid~~Hp~~~~~~-------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vA  206 (471)
T 3t41_A          144 KHANTKIAIIDTGVMKNHDDLKNNF-------STDS----------KNLVPLNGFRGTEPEETGDVHDVNDRKGHGTMVS  206 (471)
T ss_dssp             SSCCCCEEEEESCCCTTCTTTTTTB-------CTTC----------EECCCTTCGGGCCTTCCCCTTCCCCSSSHHHHHH
T ss_pred             CCCCcEEEEEeCCCCCCChhHhcCc-------ccCC----------cccccCCCccCCCcccCCCCCCCcCCCCccchhh
Confidence            9999999999999999999998531       1110          011111112111    112345778999999999


Q ss_pred             hhhccccCCCCccccccccceeecccCcEEEEEe--------chhHHHHHHHHHHCCCcEEEeCcCCCCCCC--------
Q 038474          174 STAAGNKVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIADGVDIITISLGDTSAVD--------  237 (667)
Q Consensus       174 giiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k--------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~--------  237 (667)
                      |||+|+.            ...||||+|+|+.+|        ..++++||+||+++|++|||||||......        
T Consensus       207 giiaa~g------------~~~GvAp~a~l~~~kv~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~  274 (471)
T 3t41_A          207 GQTSANG------------KLIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFR  274 (471)
T ss_dssp             HHHHCBS------------SSBCSSTTSCEEEEECCSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEEEECTTCCCSEE
T ss_pred             heeecCC------------ceeEECCCCeEEEEEeccCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCccccccccc
Confidence            9999863            138999999999999        567999999999999999999999731111        


Q ss_pred             ----ChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCC------------------cCCCCCceEEEcccc
Q 038474          238 ----LAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGF------------------TSSIAPWLMSVAAST  285 (667)
Q Consensus       238 ----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~------------------~~~~~p~vitVgA~~  285 (667)
                          ...+.+..++..+.++|++||+||||+|.....                  +|+.+|++|+|||++
T Consensus       275 ~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~  344 (471)
T 3t41_A          275 KDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTD  344 (471)
T ss_dssp             SSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEEEEEEC
T ss_pred             cccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCeEEEEeeC
Confidence                234678888899999999999999999976532                  567788899998854

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}

Probab=100.00  E-value=1.2e-47  Score=435.87  Aligned_cols=241  Identities=15%  Similarity=0.194  Sum_probs=58.2

Q ss_pred             CEEEEeCCCCCCCCCchhHHHHHHHHHhcCCCCcccEEEEecceeeEEEEEeCHHHHHHHHcCCCeeEEEcCcccccCCC
Q 038474            1 VYIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQLHTT   80 (667)
Q Consensus         1 ~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~v~~~~~~~~~~~   80 (667)
                      .|||+|++... ......+++++...+.+ .....++++.|+++|+||+++++++++++|+++|+|++|+++..++.+ .
T Consensus        77 ~YIV~lk~~~~-~~~~~~~~~~l~a~~~~-~g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~~-~  153 (692)
T 2p4e_P           77 TYVVVLKEETH-LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFAQ-S  153 (692)
T ss_dssp             EEEEEECTTCC-HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEEC--
T ss_pred             cEEEEECCCCC-HHHHHHHHHHHHHHHhh-cccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccccC-C
Confidence            49999998774 22233444555444432 223468999999999999999999999999999999999999987653 3


Q ss_pred             CCccccCCCh-----hhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccC-
Q 038474           81 RSWDFMGFNE-----SITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSF-  154 (667)
Q Consensus        81 ~s~~~ig~~~-----~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~-  154 (667)
                      ..|.+-.+..     ..|..+.+|+||+|+|||||||++||+|.+...      |.+       |         ..+.. 
T Consensus       154 ~pWgL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~~-------~---------~~~~d~  211 (692)
T 2p4e_P          154 IPWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VTD-------F---------ENVPEE  211 (692)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcchhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCceE------ecc-------c---------ccccCC
Confidence            3565543321     468888999999999999999999999985311      100       0         00000 


Q ss_pred             C-CCCCCCCCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHC---
Q 038474          155 R-DDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIAD---  221 (667)
Q Consensus       155 ~-~~~~~~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~---  221 (667)
                      + ......+.|.+||||||||||+|..              .||||+|+|+.+|         .++++++|+|++++   
T Consensus       212 dg~~~~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI~~a~~~~~~  277 (692)
T 2p4e_P          212 DGTRFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLV  277 (692)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCcccCCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhhhhc
Confidence            0 0001356789999999999999873              6999999999999         56789999999986   


Q ss_pred             ---CCcEEEeCcCCCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCC-CcCCCCCceEEEcccc
Q 038474          222 ---GVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAG-FTSSIAPWLMSVAAST  285 (667)
Q Consensus       222 ---g~dVin~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~  285 (667)
                         |++|||||||+.     ....+..++.++.++|++||+||||+|.... ..|+.+|++|+|||++
T Consensus       278 ~~~g~~VINmSlGg~-----~s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d  340 (692)
T 2p4e_P          278 QPVGPLVVLLPLAGG-----YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATN  340 (692)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             ccCCceEEEecCCCC-----CcHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEc
Confidence               899999999976     2356677788889999999999999997654 3477889999999976

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1

Probab=100.00  E-value=1.1e-44  Score=414.03  Aligned_cols=315  Identities=24%  Similarity=0.271  Sum_probs=227.4

Q ss_pred             ccEEEEecceeeEEEEEeCH----HHHHHHHc--CCCeeEEEcCcccccCCC----------------------------
Q 038474           35 NILVRSYKRSFNGFAAKLTD----HEIQKLAG--MKGVVSVFPSRTLQLHTT----------------------------   80 (667)
Q Consensus        35 ~~v~~~y~~~~ng~s~~l~~----~~~~~L~~--~p~V~~v~~~~~~~~~~~----------------------------   80 (667)
                      .++++.+ ..+++++++++.    +.+++|++  +|+|++|+|+..+++...                            
T Consensus        53 ~~v~~~~-~~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (671)
T 1r6v_A           53 GKVVLEL-PQIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEEL  131 (671)
T ss_dssp             CEEEEEE-GGGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTT
T ss_pred             CeEEEEc-CCCcEEEEEeCCcCHHHHHHHHHhccCCCceEEecCeEEEeccccccCcccccccccccccccccccccccc
Confidence            4677888 678999999965    33566764  899999999977654310                            


Q ss_pred             --CCc--cccCCChhh-hccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCC
Q 038474           81 --RSW--DFMGFNESI-TQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR  155 (667)
Q Consensus        81 --~s~--~~ig~~~~~-w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~  155 (667)
                        ..|  +.++++ .+ |+. ++|+||+|||||||||++||+|.+.-       +.                +...+.++
T Consensus       132 ~~~~W~l~~I~~~-~a~w~~-~tG~gV~VAVIDTGVd~~HpdL~~~~-------~~----------------g~~~~~~~  186 (671)
T 1r6v_A          132 SNELWGLEAIGVT-QQLWEE-ASGTNIIVAVVDTGVDGTHPDLEGQV-------IA----------------GYRPAFDE  186 (671)
T ss_dssp             GGGCHHHHHTTCC-HHHHHH-CSCTTCEEEEEESCCBTTSGGGTTTB-------CC----------------EEEGGGTE
T ss_pred             cccCCchhccCCc-hhhhhc-cCCCCCEEEEEeCCCCCCCccccccE-------Ee----------------cccccCCC
Confidence              112  125666 66 988 89999999999999999999998531       11                11111110


Q ss_pred             -CCCCCCCCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---c------------hhHHHHHHHHH
Q 038474          156 -DDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---G------------EKILAAFDDAI  219 (667)
Q Consensus       156 -~~~~~~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---~------------~~i~~a~~~a~  219 (667)
                       .....+..|.+||||||||||||.. ++   .|     +.||||+|+|+.+|   .            ..+++||+||+
T Consensus       187 ~~p~~~d~~d~~gHGThVAGiIAa~~-ng---~g-----v~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~  257 (671)
T 1r6v_A          187 ELPAGTDSSYGGSAGTHVAGTIAAKK-DG---KG-----IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWAT  257 (671)
T ss_dssp             EECTTCBCCTTCSHHHHHHHHHHCCC-SS---SS-----CCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHH
T ss_pred             cCCCCCCCccCCCcchhhhhhhhccC-CC---Cc-----eEEECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHH
Confidence             0011234567899999999999973 11   12     38999999999999   2            23789999999


Q ss_pred             HCCCcEEEeCcCCCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCC-CCcCCCCCceEEEccccCCcceeeeEEeCC
Q 038474          220 ADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKA-GFTSSIAPWLMSVAASTTDRLFVDKVVLGN  298 (667)
Q Consensus       220 ~~g~dVin~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~d~~~~~~~~~~~  298 (667)
                      ++|++|||||||+..    ....+..++.+|.++|++||+||||+|... ..+|+..|++|+|||++.+..         
T Consensus       258 ~~gadVIN~SlG~~~----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g~---------  324 (671)
T 1r6v_A          258 DHGAKVMNHSWGGWG----YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG---------  324 (671)
T ss_dssp             HTTCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT---------
T ss_pred             HcCCCEEEeCCCCCC----CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCCC---------
Confidence            999999999999862    235778888899999999999999999765 567888999999999652100         


Q ss_pred             CeEEEEEEeeeccCCCCceeeEEEccCCCCCCCCCccccccccccEEEEeechhhHHHHhcCceEEEEecCCCCCccccc
Q 038474          299 GKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLIL  378 (667)
Q Consensus       299 ~~~~~g~~s~~~~~~~~~~~~lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~  378 (667)
                                                                                                      
T Consensus       325 --------------------------------------------------------------------------------  324 (671)
T 1r6v_A          325 --------------------------------------------------------------------------------  324 (671)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccceEEeChhhHHHHHHhhhhchhhhhcccCCCCceEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceeeCCccE
Q 038474          379 PFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNI  458 (667)
Q Consensus       379 ~iP~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~a~FSSrGPt~~~~~~lKPDI~APG~~I  458 (667)
                                                                       ...++.||++||..        ||+|||++|
T Consensus       325 -------------------------------------------------~~~~a~fSn~G~~v--------dv~APG~~I  347 (671)
T 1r6v_A          325 -------------------------------------------------TFRVAGFSSRSDGV--------SVGAPGVTI  347 (671)
T ss_dssp             -------------------------------------------------EEEECSSSCCCTTE--------EEEEECSSE
T ss_pred             -------------------------------------------------ceeeccccCCCCCe--------eEEecCCCE
Confidence                                                             01357899999975        999999999


Q ss_pred             EeeeCCCCCCCC-----CcCCccceeeEEEcccCCchhhhhc--------CC-----------CcCCCC---CCCcCccc
Q 038474          459 LAAYSPLAPISR-----DIEDERHVKYNIISGTSMACPHAAA--------WP-----------MNSSKN---TQAEFAYG  511 (667)
Q Consensus       459 ~Sa~~~~~~~~~-----~~~~~~~~~y~~~SGTSMAaPhVAa--------~~-----------i~~~~~---~~~~~~~G  511 (667)
                      +|+++.......     .........|..+|||||||||||+        .|           +..+..   +.....||
T Consensus       348 ~St~p~~~~~g~~~~~~~~~~~~~~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g~d~~~G  427 (671)
T 1r6v_A          348 LSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWDHDTG  427 (671)
T ss_dssp             EEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSSCBTTTB
T ss_pred             EeecCCCCccccccccccccccCCCceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCCCCCCcc
Confidence            999876421100     0001123479999999999999992        11           111111   23457899


Q ss_pred             ccccCccCCCCCCceeccChhhH
Q 038474          512 SGHINPVKATNPGLVYEAFKQDY  534 (667)
Q Consensus       512 aG~in~~~A~~pgLvyd~~~~dy  534 (667)
                      +|+||+.+|++..|.++....||
T Consensus       428 ~G~vna~~Al~~~l~~~~~~~~~  450 (671)
T 1r6v_A          428 YGLVKLDAALQGPLPTQGGVEEF  450 (671)
T ss_dssp             TCBCCHHHHHHCCCCSSSEEEEE
T ss_pred             cceeCHHHHhhhhcCCCCCccce
Confidence            99999999999888777655454

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*

Probab=100.00  E-value=1.6e-44  Score=399.40  Aligned_cols=338  Identities=21%  Similarity=0.288  Sum_probs=233.8

Q ss_pred             ccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCC
Q 038474           85 FMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAID  164 (667)
Q Consensus        85 ~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D  164 (667)
                      .++++ .+|+.+  |+||+|||||||||++||+|.+.                        ++..+++.++ .....+.|
T Consensus        10 ~i~~~-~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~------------------------~~~~~~~~~~-~~~~~~~d   61 (441)
T 1y9z_A           10 FVGAT-VLSDSQ--AGNRTICIIDSGYDRSHNDLNAN------------------------NVTGTNNSGT-GNWYQPGN   61 (441)
T ss_dssp             HTTCS-SSCCTT--GGGCEEEEEESCCCTTSTTTTTS------------------------EEEECCCTTS-CCTTCCCS
T ss_pred             hcChh-hhhhcC--CCCcEEEEEcCCCCCCChhHhcC------------------------cccCcccCCC-CCCCCCCC
Confidence            46777 899875  77999999999999999999742                        1111222211 11235678


Q ss_pred             CCCCcchhhhhhccccCCCCccccccccceeecccCc--EEEEEe---------chhHHHHHHHHHHC-CCcEEEeCcCC
Q 038474          165 EEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSA--RISAYR---------GEKILAAFDDAIAD-GVDIITISLGD  232 (667)
Q Consensus       165 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A--~l~~~k---------~~~i~~a~~~a~~~-g~dVin~SlG~  232 (667)
                      ..||||||||||+|....    .|     +.||||+|  +|+.+|         .+++++||+||+++ |+||||||||.
T Consensus        62 ~~gHGT~vAgiia~~~~~----~g-----~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~g~~Vin~S~G~  132 (441)
T 1y9z_A           62 NNAHGTHVAGTIAAIANN----EG-----VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGG  132 (441)
T ss_dssp             SCCHHHHHHHHHHCCCSS----SB-----CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCCB
T ss_pred             CCCcHHHHHHHHhcccCC----CC-----ceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHhcCCcEEEeCCCC
Confidence            899999999999997521    22     38999995  999999         56799999999999 99999999998


Q ss_pred             CCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEccccCCcceeeeE------------------
Q 038474          233 TSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKV------------------  294 (667)
Q Consensus       233 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~d~~~~~~~------------------  294 (667)
                      ..    ....+..++.+|.++|++||+||||+|.....+|+..|++|+|||++.+.....+-                  
T Consensus       133 ~~----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~ApG~~i~s~  208 (441)
T 1y9z_A          133 SG----STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILST  208 (441)
T ss_dssp             SC----CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEEECSSEEEE
T ss_pred             CC----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEeccCCeecc
Confidence            72    12456778888999999999999999988788899999999999998764321110                  


Q ss_pred             -EeCCCe----EEEEEEeeeccCC-CC-ceee--EEEccCCC------CCCCCCcc--cc--ccccccEEEEeec-----
Q 038474          295 -VLGNGK----TIVVRYSINAFTH-KG-KMFP--LLYGKGVT------NSSSCTED--YA--NLVKGNIVLCDEF-----  350 (667)
Q Consensus       295 -~~~~~~----~~~g~~s~~~~~~-~~-~~~~--lv~~~~~~------~~~~C~~~--~~--~~~~gkIvl~~~~-----  350 (667)
                       ..++++    .+.| .+++.... +. ..++  +.+.....      ....|...  .+  .+++|||++|+|.     
T Consensus       209 ~~~g~g~~~~~~~~G-~s~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~C~~~~~~~~~~~~~gkivl~~rg~~~~~  287 (441)
T 1y9z_A          209 VTVGEGRLADITIGG-QSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGS  287 (441)
T ss_dssp             CSTTCEEEEEEEETT-EECGGGCCEECEEEEEETTEEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECCSCSSS
T ss_pred             ccCCCcccceeeccc-ccccccccCcccccccCCccccccccccccccchhccccccccccCCCccccEEEEeccccCcc
Confidence             111221    1222 22221110 00 0000  11111100      01147643  33  7899999999882     


Q ss_pred             -----hhhHHHHhcCceEEEEecCCCCCc---------ccccccceEEeChhhHHHHHHhhhhchhhhhcccCCCCceEE
Q 038474          351 -----SGYHVAREAGAAGLILKDNRLYNV---------SLILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAE  416 (667)
Q Consensus       351 -----~~~~~~~~~Ga~g~i~~~~~~~~~---------~~~~~iP~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~  416 (667)
                           +|..+++++|+.++|++++.....         .....+|.+.++..+|++|++        |+.++      .+
T Consensus       288 ~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~--------~~~~~------~t  353 (441)
T 1y9z_A          288 SYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKA--------KLGQS------TT  353 (441)
T ss_dssp             SCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHT--------TTTSE------EE
T ss_pred             cccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHH--------HhcCC------cc
Confidence                 578999999999999998865321         123469999999999999998        66432      00


Q ss_pred             EeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceeeCCccEEeeeCCCCCCCCCcCCccceeeEEEcccCCchhhhhc-
Q 038474          417 ILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVKYNIISGTSMACPHAAA-  495 (667)
Q Consensus       417 i~~~t~~~~~~~~~~a~FSSrGPt~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~SGTSMAaPhVAa-  495 (667)
                                                        +        ++..             ...|..+|||||||||||+ 
T Consensus       354 ----------------------------------~--------~~~~-------------~~~y~~~sGTSmAaP~VAG~  378 (441)
T 1y9z_A          354 ----------------------------------V--------SNQG-------------NQDYEYYNGTSMATPHVSGV  378 (441)
T ss_dssp             ----------------------------------E--------EEEE-------------EESEEEECSHHHHHHHHHHH
T ss_pred             ----------------------------------c--------cccc-------------CCCceeecccccCCcccchH
Confidence                                              0        1111             1479999999999999991 


Q ss_pred             ------------------CCCcCCCC---CCCcCcccccccCccCCCCCCceeccChhhHHHhhhcCCCC
Q 038474          496 ------------------WPMNSSKN---TQAEFAYGSGHINPVKATNPGLVYEAFKQDYINMLCSMGYD  544 (667)
Q Consensus       496 ------------------~~i~~~~~---~~~~~~~GaG~in~~~A~~pgLvyd~~~~dy~~flc~~~~~  544 (667)
                                        .+|.++..   ...+..||+|+||+.+|           .||+.|||++++.
T Consensus       379 aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~G~G~vn~~~A-----------~~~~~~lc~~~~~  437 (441)
T 1y9z_A          379 ATLVWSYHPECSASQVRAALNATADDLSVAGRDNQTGYGMINAVAA-----------KAYLDESCTGPTD  437 (441)
T ss_dssp             HHHHHHHCTTSCHHHHHHHHHHHSBCCSSSSCBTTTBTCBCCHHHH-----------HHHHHHCTTCC--
T ss_pred             HHHHHHHCCCCCHHHHHHHHHhhchhhccCCCcccccccccCHHHH-----------HHHHHhhhcCCCC
Confidence                              11222221   23567899999999999           4899999999864

>4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A

Probab=100.00  E-value=2.1e-45  Score=395.45  Aligned_cols=190  Identities=15%  Similarity=0.177  Sum_probs=123.0

Q ss_pred             ccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCc--cCCceeE----eeeec-cC--C
Q 038474           85 FMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNF--TCNNKII----GARYY-SF--R  155 (667)
Q Consensus        85 ~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f--~~n~kii----g~~~~-~~--~  155 (667)
                      ..+++ ++|+++..|++|+|||||||||++||+|++....+....|+..++.....  ..+..+.    ..+.+ ..  .
T Consensus        17 ipG~~-~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (357)
T 4h6x_A           17 IPGLA-DLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEKEEALEA   95 (357)
T ss_dssp             STTHH-HHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred             ccCHH-HHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCcccccccccccCcccccccccccccc
Confidence            44677 99999999999999999999999999999876666666776655432211  0000000    00000 00  0


Q ss_pred             -CCCCCCCCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe--------------chhHHHHHHHHHH
Q 038474          156 -DDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR--------------GEKILAAFDDAIA  220 (667)
Q Consensus       156 -~~~~~~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k--------------~~~i~~a~~~a~~  220 (667)
                       ..+..++.|.+||||||||||+|+...     |     +.||||+|+|+.+|              ..+++++++||++
T Consensus        96 ~~~~~~~~~D~~gHGThVAGiiag~~~~-----g-----~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~  165 (357)
T 4h6x_A           96 VIPDTKDRIVLNDHACHVTSTIVGQEHS-----P-----VFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALE  165 (357)
T ss_dssp             HCTTTHHHHHHHHHHHHHHHHHHCCTTS-----S-----CCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHH
T ss_pred             ccCCCCCCcCCCCcHHHHHHHHhccCCC-----C-----ceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHH
Confidence             112334567889999999999997421     2     38999999999998              3457899999999


Q ss_pred             CCCcEEEeCcCCCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEcccc
Q 038474          221 DGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAAST  285 (667)
Q Consensus       221 ~g~dVin~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~  285 (667)
                      .|++|||||||.........+.+..++.++.++|++||+||||+|.....+|+..|++|+|||++
T Consensus       166 ~g~~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~  230 (357)
T 4h6x_A          166 LGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAK  230 (357)
T ss_dssp             TTCSEEEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEEC
T ss_pred             cCCCEEeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEec
Confidence            99999999999874444556788889999999999999999999988888888999999999864

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1

Probab=100.00  E-value=1.4e-43  Score=368.66  Aligned_cols=161  Identities=25%  Similarity=0.282  Sum_probs=126.4

Q ss_pred             ccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCC
Q 038474           85 FMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAID  164 (667)
Q Consensus        85 ~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D  164 (667)
                      .++++ .+|+.+..|+||+|||||||||++||+|.+                        +++..++|..+   ..++.|
T Consensus        17 ~i~~~-~aw~~~~g~~gv~VaViDtGvd~~hp~l~~------------------------~~~~~~~~~~~---~~~~~d   68 (280)
T 1dbi_A           17 NTYTD-YAWDVTKGSSGQEIAVIDTGVDYTHPDLDG------------------------KVIKGYDFVDN---DYDPMD   68 (280)
T ss_dssp             GGTHH-HHTTTCCCCTTCEEEEEESCCCTTSTTTTT------------------------TEEEEEETTTT---BSCCCC
T ss_pred             hcCcH-HHHhhcCCCCCCEEEEEeCCcCCCChhhcc------------------------CcccceeccCC---CCCCCC
Confidence            35666 899999888899999999999999999973                        24455666532   234678


Q ss_pred             CCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCC
Q 038474          165 EEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSA  235 (667)
Q Consensus       165 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~  235 (667)
                      ..||||||||||+|...++.   |     +.||||+|+|+.+|         .++++++|+||++.|++|||||||... 
T Consensus        69 ~~gHGT~vAgiia~~~~~~~---g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~-  139 (280)
T 1dbi_A           69 LNNHGTHVAGIAAAETNNAT---G-----IAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC-  139 (280)
T ss_dssp             SSSHHHHHHHHHHCCCSSSS---S-----CCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC-
T ss_pred             CCCcHHHHHHHHhCcCCCCC---c-----ceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-
Confidence            89999999999999853322   2     28999999999999         357899999999999999999999872 


Q ss_pred             CCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEcccc
Q 038474          236 VDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAAST  285 (667)
Q Consensus       236 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~  285 (667)
                         ....+..++.++.++|++||+||||+|.....+|+..+++|+|||++
T Consensus       140 ---~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~  186 (280)
T 1dbi_A          140 ---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD  186 (280)
T ss_dssp             ---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEEC
T ss_pred             ---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeC
Confidence               23577888889999999999999999987777888899999999864

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E

Probab=100.00  E-value=5.7e-43  Score=364.08  Aligned_cols=160  Identities=23%  Similarity=0.308  Sum_probs=133.1

Q ss_pred             ccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCC
Q 038474           85 FMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAID  164 (667)
Q Consensus        85 ~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D  164 (667)
                      .++++ .+|+.. +|+||+|||||||||++||+|.+                        +++..++|..+   ...+.|
T Consensus        17 ~i~~~-~aw~~~-~G~gv~VaViDtGvd~~h~~l~~------------------------~~~~~~~~~~~---~~~~~d   67 (279)
T 1thm_A           17 KIQAP-QAWDIA-EGSGAKIAIVDTGVQSNHPDLAG------------------------KVVGGWDFVDN---DSTPQN   67 (279)
T ss_dssp             HTTHH-HHHTTC-CCTTCEEEEEESCCCTTCTTTTT------------------------TEEEEEETTTT---BSCCCC
T ss_pred             hCChH-HHHhcC-CCCCCEEEEEccCCCCCCcchhc------------------------CccccccccCC---CCCCCC
Confidence            36666 899987 79999999999999999999973                        34555666432   234678


Q ss_pred             CCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCC
Q 038474          165 EEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSA  235 (667)
Q Consensus       165 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~  235 (667)
                      ..||||||||||+|...++.   |     +.||||+|+|+.+|         ..+++++|+||+++|++|||||||... 
T Consensus        68 ~~gHGT~vAgiia~~~~n~~---g-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~-  138 (279)
T 1thm_A           68 GNGHGTHCAGIAAAVTNNST---G-----IAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTV-  138 (279)
T ss_dssp             SSSHHHHHHHHHHCCCSSSS---S-----CCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS-
T ss_pred             CCCcHHHHHHHHhCccCCCC---c-----cEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHHCCCCEEEEecCCCC-
Confidence            89999999999999864322   2     28999999999999         356899999999999999999999872 


Q ss_pred             CCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEcccc
Q 038474          236 VDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAAST  285 (667)
Q Consensus       236 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~  285 (667)
                         ....+..++.++.++|++||+||||+|.....+|+..+++|+|||++
T Consensus       139 ---~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~  185 (279)
T 1thm_A          139 ---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTD  185 (279)
T ss_dssp             ---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEEC
T ss_pred             ---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeC
Confidence               23577888889999999999999999988778888899999999864

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...

Probab=100.00  E-value=1.2e-42  Score=360.62  Aligned_cols=158  Identities=23%  Similarity=0.357  Sum_probs=127.8

Q ss_pred             ccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCC
Q 038474           85 FMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAID  164 (667)
Q Consensus        85 ~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D  164 (667)
                      .++++ .+|+.+++|+||+|||||||||++||+|+                          +...+.|..+   ...+.|
T Consensus        10 ~i~~~-~~~~~g~~G~gv~VaViDtGid~~h~~l~--------------------------~~~g~~~~~~---~~~~~d   59 (274)
T 1r0r_E           10 LIKAD-KVQAQGFKGANVKVAVLDTGIQASHPDLN--------------------------VVGGASFVAG---EAYNTD   59 (274)
T ss_dssp             HTTHH-HHHHHTCSCTTCEEEEEESCCCTTCTTCC--------------------------EEEEEECSTT---CCTTCC
T ss_pred             hcCCH-HHHhcCCCCCCCEEEEEcCCCCCCCHhHc--------------------------CCCCccccCC---CCCCCC
Confidence            36666 89999999999999999999999999994                          1233344322   123567


Q ss_pred             CCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCC
Q 038474          165 EEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSA  235 (667)
Q Consensus       165 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~  235 (667)
                      ..||||||||||+|...    ..|     +.||||+|+|+.+|         .++++++|+||++++++|||||||... 
T Consensus        60 ~~gHGT~vAgiia~~~~----~~g-----~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~-  129 (274)
T 1r0r_E           60 GNGHGTHVAGTVAALDN----TTG-----VLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS-  129 (274)
T ss_dssp             SSSHHHHHHHHHHCCSS----SSB-----CCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSS-
T ss_pred             CCCCHHHHHHHHHccCC----CCc-----eEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCC-
Confidence            89999999999999731    112     38999999999999         356899999999999999999999872 


Q ss_pred             CCChhhHHHHHHHHhhcCCeEEEEecCCCCCCC----CCcCCCCCceEEEcccc
Q 038474          236 VDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKA----GFTSSIAPWLMSVAAST  285 (667)
Q Consensus       236 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~~~~~~p~vitVgA~~  285 (667)
                         ....+..++.++.++|++||+||||+|...    ..+|+..|++|+|||++
T Consensus       130 ---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~  180 (274)
T 1r0r_E          130 ---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVD  180 (274)
T ss_dssp             ---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEEC
T ss_pred             ---CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEec
Confidence               235778888899999999999999999753    35677789999998854

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A*

Probab=100.00  E-value=1.7e-42  Score=358.42  Aligned_cols=157  Identities=26%  Similarity=0.342  Sum_probs=129.4

Q ss_pred             ccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCC
Q 038474           85 FMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAID  164 (667)
Q Consensus        85 ~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D  164 (667)
                      .++++ .+|+.+++|+||+|+|||||| .+||+|+                          +...++|..+   ...+.|
T Consensus        10 ~i~~~-~a~~~g~~G~gv~VaViDtGi-~~h~~l~--------------------------~~~~~~~~~~---~~~~~d   58 (269)
T 1gci_A           10 RVQAP-AAHNRGLTGSGVKVAVLDTGI-STHPDLN--------------------------IRGGASFVPG---EPSTQD   58 (269)
T ss_dssp             HTTHH-HHHHTTCSCTTCEEEEEESCC-CCCTTCC--------------------------EEEEEECSTT---CCSCSC
T ss_pred             hcCcH-HHHhcCCCCCCCEEEEECCCC-CCCHhhc--------------------------ccCCcccCCC---CCCCCC
Confidence            35666 899999999999999999999 8999994                          1233444322   223578


Q ss_pred             CCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCC
Q 038474          165 EEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSA  235 (667)
Q Consensus       165 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~  235 (667)
                      ..||||||||||+|..    +..|     +.||||+|+|+.+|         .++++++|+|+++++++|||||||... 
T Consensus        59 ~~gHGT~vAgiia~~~----~~~~-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~Vin~S~G~~~-  128 (269)
T 1gci_A           59 GNGHGTHVAGTIAALN----NSIG-----VLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS-  128 (269)
T ss_dssp             SSSHHHHHHHHHHCCC----SSSB-----CCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSS-
T ss_pred             CCCChHHHHHHHhcCc----CCCC-----cEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC-
Confidence            8999999999999973    1112     38999999999999         357899999999999999999999872 


Q ss_pred             CCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEcccc
Q 038474          236 VDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAAST  285 (667)
Q Consensus       236 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~  285 (667)
                         ....+..++.++.++|++||+||||+|.....+|+..+++|+|||++
T Consensus       129 ---~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~  175 (269)
T 1gci_A          129 ---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATD  175 (269)
T ss_dssp             ---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC
T ss_pred             ---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeec
Confidence               23567888888999999999999999988778888999999999864

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...

Probab=100.00  E-value=3.3e-42  Score=358.57  Aligned_cols=235  Identities=30%  Similarity=0.398  Sum_probs=186.1

Q ss_pred             ccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCC
Q 038474           85 FMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAID  164 (667)
Q Consensus        85 ~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D  164 (667)
                      .++++ .+|..+++|+||+|||||||||++||+|+.                          ...+.|..+  +.....|
T Consensus        10 ~i~~~-~~~~~g~~G~gv~VaViDtGid~~h~~l~~--------------------------~~g~~~~~~--~~~~~~d   60 (281)
T 1to2_E           10 QIKAP-ALHSQGYTGSNVKVAVIDSGIDSSHPDLKV--------------------------AGGASMVPS--ETNPFQD   60 (281)
T ss_dssp             HTTHH-HHHHHTCSCTTCEEEEEESCCCTTCTTCCE--------------------------EEEEECCTT--CCCTTCC
T ss_pred             hcChH-HHHhcCCCCCCCEEEEEcCCCCCCCHHHcC--------------------------cCCccccCC--CCCCCCC
Confidence            36666 899999999999999999999999999951                          223334321  1122367


Q ss_pred             CCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCCC
Q 038474          165 EEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTSA  235 (667)
Q Consensus       165 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~~  235 (667)
                      ..||||||||||+|...    ..|     +.||||+|+|+.+|         .++++++|+|+++++++|||||||... 
T Consensus        61 ~~gHGT~vAgiia~~~~----~~g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~-  130 (281)
T 1to2_E           61 NNSHGTHVAGTVAALNN----SIG-----VLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS-  130 (281)
T ss_dssp             SSSHHHHHHHHHHCCSS----SSS-----BCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSC-
T ss_pred             CCCcHHHHHHHHhccCC----CCc-----ceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCCcEEEECCcCCC-
Confidence            89999999999999731    112     38999999999999         356899999999999999999999872 


Q ss_pred             CCChhhHHHHHHHHhhcCCeEEEEecCCCCCCC----CCcCCCCCceEEEccccCCcceeeeEEeCCCeEEEEEEeeecc
Q 038474          236 VDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKA----GFTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAF  311 (667)
Q Consensus       236 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~s~~~~  311 (667)
                         ....+..++.++.++|++||+||||+|...    ..+|+..|++|+|||++.                         
T Consensus       131 ---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~-------------------------  182 (281)
T 1to2_E          131 ---GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS-------------------------  182 (281)
T ss_dssp             ---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT-------------------------
T ss_pred             ---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecC-------------------------
Confidence               236778888889999999999999999763    356777899999988541                         


Q ss_pred             CCCCceeeEEEccCCCCCCCCCccccccccccEEEEeechhhHHHHhcCceEEEEecCCCCCcccccccceEEeChhhHH
Q 038474          312 THKGKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFN  391 (667)
Q Consensus       312 ~~~~~~~~lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~iP~~~i~~~~g~  391 (667)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (281)
T 1to2_E          183 --------------------------------------------------------------------------------  182 (281)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhhhchhhhhcccCCCCceEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceeeCCccEEeeeCCCCCCCCC
Q 038474          392 SIIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRD  471 (667)
Q Consensus       392 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~a~FSSrGPt~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~  471 (667)
                                                          .+.++.||++||.        |||+|||++|+++++.+      
T Consensus       183 ------------------------------------~~~~~~fS~~G~~--------~di~APG~~i~s~~~~~------  212 (281)
T 1to2_E          183 ------------------------------------SNQRASFSSVGPE--------LDVMAPGVSIQSTLPGN------  212 (281)
T ss_dssp             ------------------------------------TSCBCTTCCCSTT--------CCEEEECSSEEEEETTT------
T ss_pred             ------------------------------------CCCcCCcCCCCCC--------ceEEecCCCeEeecCCC------
Confidence                                                1345789999985        59999999999998764      


Q ss_pred             cCCccceeeEEEcccCCchhhhhc--------C-----------CCcCCCCCCCcCcccccccCccCCCCC
Q 038474          472 IEDERHVKYNIISGTSMACPHAAA--------W-----------PMNSSKNTQAEFAYGSGHINPVKATNP  523 (667)
Q Consensus       472 ~~~~~~~~y~~~SGTSMAaPhVAa--------~-----------~i~~~~~~~~~~~~GaG~in~~~A~~p  523 (667)
                             .|..++||||||||||+        .           ++.++.....++.||+|+||+.+|+.+
T Consensus       213 -------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g~~~~~G~G~v~~~~a~~~  276 (281)
T 1to2_E          213 -------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLINVQAAAQH  276 (281)
T ss_dssp             -------EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCSCHHHHTTCBCCHHHHTSS
T ss_pred             -------CEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCCcccceecHHHHhhh
Confidence                   69999999999999992        1           112222234678899999999999875

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*

Probab=100.00  E-value=3.4e-42  Score=366.03  Aligned_cols=164  Identities=23%  Similarity=0.297  Sum_probs=129.4

Q ss_pred             cccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCC-CCCCCC
Q 038474           84 DFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRD-DGNGSA  162 (667)
Q Consensus        84 ~~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~-~~~~~~  162 (667)
                      +.++++ .+|+.+++|+||+|||||||||++||+|.+                        +++..++|..+. ......
T Consensus        26 ~~i~~~-~aw~~~~~G~gv~VaViDtGid~~Hp~l~~------------------------~~~~~~~~~~~~~~~~~~~   80 (327)
T 2x8j_A           26 EIVEAP-AVWRASAKGAGQIIGVIDTGCQVDHPDLAE------------------------RIIGGVNLTTDYGGDETNF   80 (327)
T ss_dssp             HHTTHH-HHHHHHGGGTTCEEEEEESCCCTTCTTTGG------------------------GEEEEEECSSGGGGCTTCC
T ss_pred             hhcChH-HHHhcCCCCCCCEEEEEcCCCCCCChhHhh------------------------cccCCccccCCCCCCCCCC
Confidence            346777 999999999999999999999999999973                        344555554321 112345


Q ss_pred             CCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHH------CCCcEEE
Q 038474          163 IDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIA------DGVDIIT  227 (667)
Q Consensus       163 ~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~------~g~dVin  227 (667)
                      .|..||||||||||+|.. ++   .|     +.||||+|+|+.+|         .+++++||+||++      .+++|||
T Consensus        81 ~d~~gHGT~VAgiia~~~-~~---~g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~Vin  151 (327)
T 2x8j_A           81 SDNNGHGTHVAGTVAAAE-TG---SG-----VVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIIT  151 (327)
T ss_dssp             CCSSSHHHHHHHHHHCCC-CS---SB-----CCCSSTTCEEEEEECSCTTSEECHHHHHHHHHHHHHCCCTTSCCCSEEE
T ss_pred             CCCCCchHHHHHHHhccC-CC---CC-----cEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHhhcccccCCceEEE
Confidence            789999999999999973 11   12     38999999999999         3568999999999      8999999


Q ss_pred             eCcCCCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCC-----CCcCCCCCceEEEcccc
Q 038474          228 ISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKA-----GFTSSIAPWLMSVAAST  285 (667)
Q Consensus       228 ~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-----~~~~~~~p~vitVgA~~  285 (667)
                      ||||...    ....+..++.++.++|++||+||||+|...     ..+|+..|++|+|||++
T Consensus       152 ~S~G~~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~  210 (327)
T 2x8j_A          152 MSLGGPT----DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVD  210 (327)
T ss_dssp             ECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEEC
T ss_pred             ECCCcCC----CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEEC
Confidence            9999872    235677888889999999999999999752     35677889999999864

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A

Probab=100.00  E-value=2.4e-41  Score=373.31  Aligned_cols=267  Identities=28%  Similarity=0.322  Sum_probs=198.1

Q ss_pred             ccccCCChhhhc-cCCCCCCcEEEEEcCCCCC------CCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCC
Q 038474           83 WDFMGFNESITQ-RRTVESDLIVGVIDTGIWP------QSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR  155 (667)
Q Consensus        83 ~~~ig~~~~~w~-~~~~G~gv~VgViDtGid~------~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~  155 (667)
                      .+.++++ .+|+ .+++|+||+|||||||||.      .||+|.+                        +++..++|.. 
T Consensus         5 ~~~i~~~-~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~------------------------~i~~~~~~~~-   58 (434)
T 1wmd_A            5 RGIVKAD-VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRG------------------------KITALYALGR-   58 (434)
T ss_dssp             HHHTTHH-HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTT------------------------CEEEEEETTT-
T ss_pred             hhhhCch-hhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCC------------------------CEeeeccccC-
Confidence            3567788 8998 7999999999999999999      7999963                        3445555642 


Q ss_pred             CCCCCCCCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe-----------chhHHHHHHHHHHCCCc
Q 038474          156 DDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-----------GEKILAAFDDAIADGVD  224 (667)
Q Consensus       156 ~~~~~~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-----------~~~i~~a~~~a~~~g~d  224 (667)
                         ...+.|..||||||||||+|+..      +     +.||||+|+|+++|           ..++.++|++|++.|++
T Consensus        59 ---~~~~~d~~gHGT~VAgiiag~g~------~-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~ai~~a~~~g~~  124 (434)
T 1wmd_A           59 ---TNNANDTNGHGTHVAGSVLGNGS------T-----NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGAR  124 (434)
T ss_dssp             ---TTCCCCSSSHHHHHHHHHHCCSS------S-----SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCS
T ss_pred             ---CCCCCCCCCcHHHHHHHHHcCCC------C-----ceeeCCCCEEEEEEeecCCCccccccHHHHHHHHHHHhcCCe
Confidence               23567889999999999998631      1     37999999999999           13689999999999999


Q ss_pred             EEEeCcCCCCCCCChhhHHHHHHHHh-hcCCeEEEEecCCCCCCCC--CcCCCCCceEEEccccCCcceeeeEEeCCCeE
Q 038474          225 IITISLGDTSAVDLAHDVIAIGAFHA-MTKGILTVNSAGNNGPKAG--FTSSIAPWLMSVAASTTDRLFVDKVVLGNGKT  301 (667)
Q Consensus       225 Vin~SlG~~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~  301 (667)
                      |||||||......+  +....++.++ .++|++||+||||+|....  ..|+.++++|+|||++..+...          
T Consensus       125 Vin~S~G~~~~~~~--~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~----------  192 (434)
T 1wmd_A          125 IHTNSWGAAVNGAY--TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF----------  192 (434)
T ss_dssp             EEEECCCBCCTTCC--CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG----------
T ss_pred             EEEecCCCCcCCcC--CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCccc----------
Confidence            99999998732222  3445555555 5799999999999997643  4577889999999976432000          


Q ss_pred             EEEEEeeeccCCCCceeeEEEccCCCCCCCCCccccccccccEEEEeechhhHHHHhcCceEEEEecCCCCCcccccccc
Q 038474          302 IVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFP  381 (667)
Q Consensus       302 ~~g~~s~~~~~~~~~~~~lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~iP  381 (667)
                        +           .                                                                 
T Consensus       193 --~-----------~-----------------------------------------------------------------  194 (434)
T 1wmd_A          193 --G-----------S-----------------------------------------------------------------  194 (434)
T ss_dssp             --C-----------G-----------------------------------------------------------------
T ss_pred             --C-----------c-----------------------------------------------------------------
Confidence              0           0                                                                 


Q ss_pred             eEEeChhhHHHHHHhhhhchhhhhcccCCCCceEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceeeCCccEEee
Q 038474          382 ASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAA  461 (667)
Q Consensus       382 ~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~a~FSSrGPt~~~~~~lKPDI~APG~~I~Sa  461 (667)
                                            |..                    ..+.++.||+|||+.  ++++||||+|||++|+++
T Consensus       195 ----------------------~~~--------------------~~~~~a~fS~~G~~~--~g~~kpdi~ApG~~i~s~  230 (434)
T 1wmd_A          195 ----------------------YAD--------------------NINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSA  230 (434)
T ss_dssp             ----------------------GGS--------------------CTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEE
T ss_pred             ----------------------ccC--------------------CCCccccccCCCCCC--CCCCCceEEcCCCCeEec
Confidence                                  111                    135789999999998  899999999999999999


Q ss_pred             eCCCCCCCCCcCCccceeeEEEcccCCchhhhhc--CC----------------------CcCCCC---CCCcCcccccc
Q 038474          462 YSPLAPISRDIEDERHVKYNIISGTSMACPHAAA--WP----------------------MNSSKN---TQAEFAYGSGH  514 (667)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~y~~~SGTSMAaPhVAa--~~----------------------i~~~~~---~~~~~~~GaG~  514 (667)
                      ++...+.... .......|..++||||||||||+  .+                      +..+..   ......||+|+
T Consensus       231 ~~~~~~~~~~-~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~~~~~~~~G~G~  309 (434)
T 1wmd_A          231 RSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGYPNGNQGWGR  309 (434)
T ss_dssp             CCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSSCSSCTTTTTCB
T ss_pred             CCCCCCCccc-ccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCCCCCCccCCcCe
Confidence            8753211100 00113479999999999999991  00                      011111   34567899999


Q ss_pred             cCccCCCCCC
Q 038474          515 INPVKATNPG  524 (667)
Q Consensus       515 in~~~A~~pg  524 (667)
                      ||+.+|+...
T Consensus       310 vd~~~a~~~~  319 (434)
T 1wmd_A          310 VTLDKSLNVA  319 (434)
T ss_dssp             CCHHHHHTCE
T ss_pred             EeHHHhcccc
Confidence            9999999654

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}

Probab=100.00  E-value=3.4e-41  Score=400.64  Aligned_cols=380  Identities=19%  Similarity=0.213  Sum_probs=235.9

Q ss_pred             CcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhhhhcccc
Q 038474          101 DLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTASTAAGNK  180 (667)
Q Consensus       101 gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAgiiag~~  180 (667)
                      +|+|||||||++.+|++..-      ...|+...+.+ .|  .+.+.+..++.++........|++||||||||||||..
T Consensus       214 ~V~VAVIDTG~d~DL~d~~~------l~~Y~~~~dyg-~F--~D~v~~~~n~~Ddgd~~~~v~D~~GHGThVAGIIAa~~  284 (1354)
T 3lxu_X          214 DGWLTIVDTTEQGDLDQALR------IGEYSRTHETR-NV--DDFLSISVNVHDEGNVLEVVGMSSPHGTHVSSIASGNH  284 (1354)
T ss_dssp             SSCEEEECSSSSCCSSCSEE------EECTTTTCCCC-EE--SSSCEEEEEEEGGGTEEEEEECCCHHHHHHHHHHCCCC
T ss_pred             CEEEEEEeCCCCCCcccccc------ccccccccccc-cc--ccccCCCCccCCCCCccccCCCCCCcHHHHHHHHhcCC
Confidence            69999999999876665421      01111111111 11  12222222322111111123578999999999999985


Q ss_pred             CCCCccccccccceeecccCcEEEEEe--c---------hhHHHHHHHHHH-----CCCcEEEeCcCCCCCCCChhhHHH
Q 038474          181 VKDASFLGIGQGMARGGVPSARISAYR--G---------EKILAAFDDAIA-----DGVDIITISLGDTSAVDLAHDVIA  244 (667)
Q Consensus       181 ~~~~~~~G~~~g~~~GvAP~A~l~~~k--~---------~~i~~a~~~a~~-----~g~dVin~SlG~~~~~~~~~~~~~  244 (667)
                       ++.   |     +.||||+|+|+.+|  .         .+++.+|.+|++     .|++|||||||... .....+.+.
T Consensus       285 -N~~---g-----~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVINmS~G~~~-~~~~~~~l~  354 (1354)
T 3lxu_X          285 -SSR---D-----VDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHA-NWSNSGRIG  354 (1354)
T ss_dssp             -SSS---S-----SCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEEEECCCCCC-SCSSCCHHH
T ss_pred             -CCC---C-----ceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEEEcCCccCC-CCCccHHHH
Confidence             221   2     38999999999999  1         357888888877     79999999999973 222345677


Q ss_pred             HHHHHhh-cCCeEEEEecCCCCCCCCC--cCCC--CCceEEEccccCCcceeeeEEeCCCeEEEEEEeeeccCCCCceee
Q 038474          245 IGAFHAM-TKGILTVNSAGNNGPKAGF--TSSI--APWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKGKMFP  319 (667)
Q Consensus       245 ~a~~~a~-~~Gi~vV~AAGN~G~~~~~--~~~~--~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~s~~~~~~~~~~~~  319 (667)
                      .++.++. ++|++||+||||+|+...+  +++.  ++++|+|||++.+......                          
T Consensus       355 ~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~--------------------------  408 (1354)
T 3lxu_X          355 ELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAE--------------------------  408 (1354)
T ss_dssp             HHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC---------------------------
T ss_pred             HHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCcccc--------------------------
Confidence            7777776 8999999999999986544  4553  7999999997643211000                          


Q ss_pred             EEEccCCCCCCCCCccccccccccEEEEeechhhHHHHhcCceEEEEecCCCCCcccccccceEEeChhhHHHHHHhhhh
Q 038474          320 LLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIHQFYQ  399 (667)
Q Consensus       320 lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~~~~~  399 (667)
                                                                                                      
T Consensus       409 --------------------------------------------------------------------------------  408 (1354)
T 3lxu_X          409 --------------------------------------------------------------------------------  408 (1354)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhhcccCCCCceEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceeeCCccEEeeeCCCCCCCCCcCCcccee
Q 038474          400 VIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHVK  479 (667)
Q Consensus       400 ~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~a~FSSrGPt~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~  479 (667)
                          |....                 ...+.++.||||||+.  ++++||||+|||++|+++.....           ..
T Consensus       409 ----ys~~~-----------------~~~g~~asFSS~GPt~--dg~~KpDIaAPG~~I~St~~~~~-----------~~  454 (1354)
T 3lxu_X          409 ----YAMRE-----------------KLPGNVYTWTSRDPCI--DGGQGVTVCAPGGAIASVPQFTM-----------SK  454 (1354)
T ss_dssp             ------------------------------CCCCCCCCSCCS--SSSCCEEEEEEC------------------------
T ss_pred             ----ccccc-----------------CCCCccccccCCCCCc--cCCCcceEEecCceEEEeecCCC-----------Cc
Confidence                10000                 1125788999999998  89999999999999999855321           36


Q ss_pred             eEEEcccCCchhhhhc--CCC---------------------cCCCC--CCCcCcccccccCccCCCCCCceeccChhhH
Q 038474          480 YNIISGTSMACPHAAA--WPM---------------------NSSKN--TQAEFAYGSGHINPVKATNPGLVYEAFKQDY  534 (667)
Q Consensus       480 y~~~SGTSMAaPhVAa--~~i---------------------~~~~~--~~~~~~~GaG~in~~~A~~pgLvyd~~~~dy  534 (667)
                      |..+|||||||||||+  .+|                     .++..  ...++.||+|+||+.+|++..+.|+..+.+|
T Consensus       455 y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~~~~~~~G~GlLDa~~AV~~a~~~~~~p~~~  534 (1354)
T 3lxu_X          455 SQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVDPFAQGHGLLNVEKAFEHLTEHRQSKDNM  534 (1354)
T ss_dssp             --CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTTSCTTTSSSSBCCHHHHHHHHHTTTTCGGGG
T ss_pred             eecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCCCCcccccCCEeCHHHHHHHHHhcCCCCccc
Confidence            8999999999999992  111                     11211  2366789999999999999999999999999


Q ss_pred             HHhhhcCCCCccceeeecCCCCcccCCCCCCCCCCCCCCcEEEeecCCCceeEEEEEEEEecC---CC-Cee--EEEEEe
Q 038474          535 INMLCSMGYDVDKLRTISGDNSTCSKGSEKTSPKDLNYPSMAAQVSSGESFTIKFPRTVTNIG---LP-NST--YKARIL  608 (667)
Q Consensus       535 ~~flc~~~~~~~~i~~~~~~~~~c~~~~~~~~~~~lNypsi~~~~~~~~~~~~~~~rtvtNvg---~~-~~t--Y~~~v~  608 (667)
                      +.|+|..++...+ .++.+.+ .|..              ..       ...++|+-+..|..   .. ...  -++.+.
T Consensus       535 v~f~~~v~~~~~r-gIylR~~-~~~~--------------~~-------~~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~  591 (1354)
T 3lxu_X          535 LRFSVRVGNNADK-GIHLRQG-VQRN--------------SI-------DYNVYIEPIFYNDKEADPKDKFNFNVRLNLI  591 (1354)
T ss_dssp             EEEEEEETTTTBS-SEEECSS-CCCS--------------CE-------EEEEEEEEEESSCSCSSSTTCSCCCCEEEEE
T ss_pred             eEEEEEecCCCCC-ceEEecc-ccCC--------------ce-------EEEEEEeeeecCcccCChhhccceEEEEEEe
Confidence            9999999854322 1222221 1110              00       01222333332211   11 111  222222


Q ss_pred             cCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEEc-----CCeEEEeeEEc
Q 038474          609 QNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFD-----GSHIVRSPIVF  667 (667)
Q Consensus       609 ~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~G~l~w~~-----~~h~vr~P~~v  667 (667)
                      ... --|. .|+.|.+  .++.++|.|+++.+.. ..+..+++|...|     .+..-|+||.|
T Consensus       592 ~t~-~wv~-~p~~l~l--~~~~r~~~v~vDp~~L-~~G~h~~~v~~~D~~~~~~gp~f~ipvTv  650 (1354)
T 3lxu_X          592 ASQ-PWVQ-CGAFLDL--SYGTRSIAVRVDPTGL-QPGVHSAVIRAYDTDCVQKGSLFEIPVTV  650 (1354)
T ss_dssp             ESS-TTEE-ECSCEEC--TTSCEEEEEEECGGGC-CSEEEEEEEEEEESSCTTSCCSEEEEEEE
T ss_pred             cCC-Ccee-cccceee--cCCCceEEEEECCCCC-CCcceeEEEEEEEcCCcccCceEEeeEEE
Confidence            211 1233 3888877  6899999999999874 4578999999876     35788999875

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}

Probab=100.00  E-value=9.3e-42  Score=365.99  Aligned_cols=162  Identities=23%  Similarity=0.233  Sum_probs=131.7

Q ss_pred             ccCCChhhhccCCCCC--CcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCC--CCCCC
Q 038474           85 FMGFNESITQRRTVES--DLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR--DDGNG  160 (667)
Q Consensus        85 ~ig~~~~~w~~~~~G~--gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~--~~~~~  160 (667)
                      .++++ .+|+. ++|+  ||+||||||||| +||+|.+                        +++..++|..+  ..+..
T Consensus        29 ~i~~~-~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~------------------------~~~~~~~~~~~~~~~~~~   81 (347)
T 2iy9_A           29 AIGLT-ETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSD------------------------SEFAKFSFTQDGSPFPVK   81 (347)
T ss_dssp             HHTCC-HHHHH-TSCTTSCCEEEEEESCCC-CCGGGTT------------------------CEEEEEECBTTCCSSCCS
T ss_pred             hCChH-HHHHH-hcCCCCCCEEEEEcCCCc-CChhhhc------------------------CcccCCcccCCCCCCCCC
Confidence            47788 99998 8999  999999999999 9999973                        23445555432  12223


Q ss_pred             CCCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe------chhHHHHHHHHHHC------CCcEEEe
Q 038474          161 SAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR------GEKILAAFDDAIAD------GVDIITI  228 (667)
Q Consensus       161 ~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k------~~~i~~a~~~a~~~------g~dVin~  228 (667)
                      .+.|..||||||||||+|.       .|+     .||||+|+|+.+|      ..++++||+||+++      |++||||
T Consensus        82 ~~~d~~gHGT~vAgiia~~-------~g~-----~GvAp~a~l~~~~v~~~~~~~~~~~ai~~a~~~~~~~~~~~~Vin~  149 (347)
T 2iy9_A           82 KSEALYIHGTAMASLIASR-------YGI-----YGVYPHALISSRRVIPDGVQDSWIRAIESIMSNVFLAPGEEKIINI  149 (347)
T ss_dssp             SSHHHHHHHHHHHHHHHCS-------SSS-----CCSSTTCEEEEEECCSSBCTTHHHHHHHHHHTCTTSCTTEEEEEEE
T ss_pred             CCCCCCCcHHHHHHHHhcc-------cCC-----cccCCCCEEEEEEEecCCCHHHHHHHHHHHHhhhhcccCCceEEEe
Confidence            5677899999999999997       122     8999999999999      34899999999999      9999999


Q ss_pred             CcCCCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCC-------CCCcCCCCC----------ceEEEccccC
Q 038474          229 SLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPK-------AGFTSSIAP----------WLMSVAASTT  286 (667)
Q Consensus       229 SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~-------~~~~~~~~p----------~vitVgA~~~  286 (667)
                      |||... .......+..++..+.++|++||+||||+|..       ...+|+..+          ++|+|||++.
T Consensus       150 S~G~~~-~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~Vga~~~  223 (347)
T 2iy9_A          150 SGGQKG-VASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQ  223 (347)
T ss_dssp             SSCBCC-C-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEEEEEECC
T ss_pred             ccccCC-CCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEEEEEccc
Confidence            999762 23456788888999999999999999999975       346777788          9999998763

>3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A

Probab=100.00  E-value=1e-41  Score=355.25  Aligned_cols=155  Identities=19%  Similarity=0.179  Sum_probs=121.5

Q ss_pred             CCCC-CCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhh
Q 038474           96 RTVE-SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTAS  174 (667)
Q Consensus        96 ~~~G-~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAg  174 (667)
                      .++| +||+|||||||||++||+|.+.                        .+..+.+..+ .......|.+||||||||
T Consensus         3 ~l~G~~gV~VaViDtGid~~Hpdl~g~------------------------~~~~~~~~~~-~~~~~d~~~~gHGT~VAG   57 (282)
T 3zxy_A            3 SLKGDHNIRVAILDGPVDIAHPCFQGA------------------------DLTVLPTLAP-TAARSDGFMSAHGTHVAS   57 (282)
T ss_dssp             TCCCCTTSEEEEEESCCCTTSGGGTTC------------------------EEEECCCSSC-CCCCTTCHHHHHHHHHHH
T ss_pred             CCcCCCCCEEEEEcCCCCCCChhHCCC------------------------eeecCcCCCC-CCCCCCCCCCCcccceee
Confidence            4578 6999999999999999999742                        1111222111 111223356799999999


Q ss_pred             hhccccCCCCccccccccceeecccCcEEEEEe----------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCChhhHHH
Q 038474          175 TAAGNKVKDASFLGIGQGMARGGVPSARISAYR----------GEKILAAFDDAIADGVDIITISLGDTSAVDLAHDVIA  244 (667)
Q Consensus       175 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k----------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~  244 (667)
                      ||+|+..+     |     +.||||+|+|+.+|          ..+++++|+||++.+++|||||||...........+.
T Consensus        58 iiag~~~~-----~-----~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~~~~~~  127 (282)
T 3zxy_A           58 IIFGQPET-----S-----VPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTDFGEADGWLE  127 (282)
T ss_dssp             HHHCCTTS-----S-----SCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSSCCCHHHH
T ss_pred             hhhccCCc-----e-----eeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCccccccccccHHHH
Confidence            99987421     2     38999999999999          4468999999999999999999997633334456778


Q ss_pred             HHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEcccc
Q 038474          245 IGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAAST  285 (667)
Q Consensus       245 ~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~  285 (667)
                      .++..+.++|+++|+||||+|.....+|+..|++|+|||++
T Consensus       128 ~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~  168 (282)
T 3zxy_A          128 NAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMD  168 (282)
T ss_dssp             HHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEEC
T ss_pred             HHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEc
Confidence            88889999999999999999988878888999999999864

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*

Probab=100.00  E-value=1.4e-40  Score=351.47  Aligned_cols=165  Identities=27%  Similarity=0.346  Sum_probs=131.8

Q ss_pred             ccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCC-CCCCCCC
Q 038474           85 FMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRD-DGNGSAI  163 (667)
Q Consensus        85 ~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~-~~~~~~~  163 (667)
                      .++++ .+|+.+++|+||+|||||||||++||+|.+.                        +...++|..+. .......
T Consensus        12 ~i~~~-~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~------------------------~~~~~~~~~~~~~~~~~~~   66 (310)
T 2ixt_A           12 AIYNN-DTLTSTTGGSGINIAVLDTGVNTSHPDLVNN------------------------VEQCKDFTGATTPINNSCT   66 (310)
T ss_dssp             HHHTC-TTCCCCCCCTTCEEEEEESCCCTTCTTTTTT------------------------EEEEEESSSSSSCEETCCC
T ss_pred             hcCch-hhhhccCCCCCcEEEEEecCCCCCCHHHhhc------------------------ccccccccCCCCCCCCCCC
Confidence            46777 8999999999999999999999999999742                        34445554321 1123456


Q ss_pred             CCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCC-----cEEEeC
Q 038474          164 DEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGV-----DIITIS  229 (667)
Q Consensus       164 D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~-----dVin~S  229 (667)
                      |..||||||||||+|....  +..|     +.||||+|+|+.+|         .++++++|+|++++++     +|||||
T Consensus        67 d~~gHGT~vAgiia~~~~~--n~~g-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~Vin~S  139 (310)
T 2ixt_A           67 DRNGHGTHVAGTALADGGS--DQAG-----IYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMS  139 (310)
T ss_dssp             CSSSHHHHHHHHHHCBCCT--TSCS-----CBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CCCCCHHHHHHHHhccCCC--CCCc-----eEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhhhccCCCeEEEEc
Confidence            8899999999999997521  1112     38999999999999         4578999999999888     999999


Q ss_pred             cCCCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCC--CCCcCCCCCceEEEcccc
Q 038474          230 LGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPK--AGFTSSIAPWLMSVAAST  285 (667)
Q Consensus       230 lG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~--~~~~~~~~p~vitVgA~~  285 (667)
                      ||...    ....+..++.++.++|++||+||||+|..  ...+|+..|++|+|||++
T Consensus       140 ~G~~~----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~  193 (310)
T 2ixt_A          140 LGSSA----NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALE  193 (310)
T ss_dssp             CCBSS----CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEE
T ss_pred             CCCCC----CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEecc
Confidence            99872    24567788888999999999999999976  345677889999999864

>4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596}

Probab=100.00  E-value=1.5e-41  Score=358.11  Aligned_cols=166  Identities=17%  Similarity=0.214  Sum_probs=129.3

Q ss_pred             cccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCC
Q 038474           84 DFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAI  163 (667)
Q Consensus        84 ~~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~  163 (667)
                      ++.|++ ++|+.+..++||+|||||||||++||+|.+.                       .+....+|..+  +.....
T Consensus         6 ~i~G~~-~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~-----------------------~~~~~~~~~~~--~~~~~~   59 (306)
T 4h6w_A            6 NIPGLK-KLWSETRGDPKICVAVLDGIVDQNHPCFIGA-----------------------DLTRLPSLVSG--EANANG   59 (306)
T ss_dssp             -CTTHH-HHHHHCSCCTTCEEEEESSCCCTTSGGGTTC-----------------------EEEECC------------C
T ss_pred             CCcCHH-HHHhhhCCCCCCEEEEEcCCCCCCChhHcCC-----------------------cccCCCcccCC--CCCCCC
Confidence            345777 9999987779999999999999999999742                       12222222211  112344


Q ss_pred             CCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe----------chhHHHHHHHHHHCCCcEEEeCcCCC
Q 038474          164 DEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR----------GEKILAAFDDAIADGVDIITISLGDT  233 (667)
Q Consensus       164 D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k----------~~~i~~a~~~a~~~g~dVin~SlG~~  233 (667)
                      |.+||||||||||+|+...          .+.||||+|+|+.+|          ..+++++|+||++++++|||+|||..
T Consensus        60 d~~gHGThVAGiiag~~~~----------~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~s~g~~  129 (306)
T 4h6w_A           60 SMSTHGTHVASIIFGQHDS----------PVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAGQL  129 (306)
T ss_dssp             CCCHHHHHHHHHHHCCTTS----------SSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEECCCEE
T ss_pred             CCCCchHHHHHHHHccccC----------CcceeccccccceeeccccccccchHHHHHHHHHHhhcccceeeecccccc
Confidence            6789999999999987421          238999999999998          44689999999999999999999975


Q ss_pred             CCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEcccc
Q 038474          234 SAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAAST  285 (667)
Q Consensus       234 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~  285 (667)
                      .........+..++..+.++|++||+||||+|.....+|+..+++|+|||++
T Consensus       130 ~~~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~  181 (306)
T 4h6w_A          130 TDAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMD  181 (306)
T ss_dssp             ESSSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEEC
T ss_pred             ccCCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEec
Confidence            3334455678888899999999999999999988778888899999998864

>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A

Probab=100.00  E-value=1.1e-40  Score=353.49  Aligned_cols=162  Identities=22%  Similarity=0.262  Sum_probs=130.4

Q ss_pred             ccCCChhhhccCCCCC--CcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCC--CCCC
Q 038474           85 FMGFNESITQRRTVES--DLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRD--DGNG  160 (667)
Q Consensus        85 ~ig~~~~~w~~~~~G~--gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~--~~~~  160 (667)
                      .++++ .+|+.+ +|+  ||+|||||||||++||+|.+                        ++...++|..+.  ....
T Consensus        14 ~i~~~-~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~------------------------~~~~~~~~~~~~~~~~~~   67 (320)
T 2z30_A           14 RVKAP-SVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAA------------------------NIAWCVSTLRGKVSTKLR   67 (320)
T ss_dssp             HTTCG-GGTTTC-CSCCTTCEEEEEESCBCTTCTTTGG------------------------GEEEEEECGGGCCBCCHH
T ss_pred             hcChH-HHHHhc-CCCcCCeEEEEECCCCCCCChhHhc------------------------ccccCccccCCccCCCCC
Confidence            47777 999998 999  99999999999999999973                        233344443211  0112


Q ss_pred             CCCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHC----------
Q 038474          161 SAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIAD----------  221 (667)
Q Consensus       161 ~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~----------  221 (667)
                      +..|..||||||||||+|.. +   ..|     +.||||+|+|+.+|         .++++++|+||++.          
T Consensus        68 ~~~d~~gHGT~vAgiia~~~-n---~~g-----~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~~  138 (320)
T 2z30_A           68 DCADQNGHGTHVIGTIAALN-N---DIG-----VVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGD  138 (320)
T ss_dssp             HHBCSSSHHHHHHHHHHCCS-S---SBS-----CCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSCTTSS
T ss_pred             CCCCCCCCHHHHHHHHHccc-C---CCc-----eEeeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHhCcccccccccc
Confidence            24678999999999999963 1   112     38999999999999         35799999999987          


Q ss_pred             ----------CCcEEEeCcCCCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEcccc
Q 038474          222 ----------GVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAAST  285 (667)
Q Consensus       222 ----------g~dVin~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~  285 (667)
                                +++|||||||...    ....+..++.++.++|++||+||||+|.....+|+..|++|+|||++
T Consensus       139 ~~~~~~~~~~~~~Vin~S~G~~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~  208 (320)
T 2z30_A          139 GIIAGDPDDDAAEVISMSLGGPA----DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAID  208 (320)
T ss_dssp             SCCTTCTTSCCCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC
T ss_pred             cccccccccCCceEEEecCCCCC----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEeeC
Confidence                      9999999999872    23567778888999999999999999988778899999999999864

>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A

Probab=100.00  E-value=5.2e-41  Score=359.18  Aligned_cols=183  Identities=20%  Similarity=0.227  Sum_probs=128.6

Q ss_pred             cCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCce----eEeeeecc-----CCC
Q 038474           86 MGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNK----IIGARYYS-----FRD  156 (667)
Q Consensus        86 ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~k----iig~~~~~-----~~~  156 (667)
                      ++++ .+|+.+++|+||+||||||||+ +||+|.+.-..    .|+-..........+++    .....++.     +.+
T Consensus        19 i~~~-~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~   92 (340)
T 3lpc_A           19 VKAD-KVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLP----GYDFISNSQISLDGDGRDADPFDEGDWFDNWACGGRP   92 (340)
T ss_dssp             CCHH-HHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBCC----CEECCCCHHHHCSSSSSBSCCBCCCCCBCTTTTSCTT
T ss_pred             CCHH-HHHHhcCCCCCeEEEEEcCCCC-CChhhhccccc----CccccCCccccccCCCccCCccccccccccccccCCC
Confidence            6666 9999999999999999999998 99999753111    11100000000000000    00000010     111


Q ss_pred             CCCCCCCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe--------chhHHHHHHHHHH--------
Q 038474          157 DGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR--------GEKILAAFDDAIA--------  220 (667)
Q Consensus       157 ~~~~~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k--------~~~i~~a~~~a~~--------  220 (667)
                      .+.....|..||||||||||+|...++.   |     +.||||+|+|+.+|        ..+++++++||++        
T Consensus        93 ~~~~~~~d~~gHGT~vAgiia~~~~~~~---g-----~~GvAp~a~l~~~~v~~~~~~~~~~~~~ai~~a~~~~~~~~~~  164 (340)
T 3lpc_A           93 DPRKERSDSSWHGSHVAGTIAAVTNNRI---G-----VAGVAYGAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIPE  164 (340)
T ss_dssp             CGGGSCBCCCCHHHHHHHHHHCCCSSSS---S-----CCCTTTTSEEEEEECCBTTBCCHHHHHHHHHHHHTCCCTTSCC
T ss_pred             CcccCCCCCCCCHHHHHHHHHccCCCCC---c-----ceeecCCCEEEEEEEecCCCCcHHHHHHHHHHHhccccccccc
Confidence            2223457889999999999999864322   2     28999999999999        4679999999998        


Q ss_pred             --CCCcEEEeCcCCCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCC-CcCCCCCceEEEcccc
Q 038474          221 --DGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAG-FTSSIAPWLMSVAAST  285 (667)
Q Consensus       221 --~g~dVin~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~  285 (667)
                        .+++|||||||...   .....+..++.++.++|++||+||||+|.... .+++..+++|+|||++
T Consensus       165 ~~~~~~Vin~S~G~~~---~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~  229 (340)
T 3lpc_A          165 NRNPAKVINMSLGSDG---QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATT  229 (340)
T ss_dssp             CSSCCSEEEECCCEES---CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEEC
T ss_pred             ccCCCeEEEeCcCCCC---CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCC
Confidence              89999999999761   22455777888889999999999999997644 4677889999999864

>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*

Probab=100.00  E-value=2.8e-38  Score=329.25  Aligned_cols=152  Identities=20%  Similarity=0.285  Sum_probs=126.5

Q ss_pred             CCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCC
Q 038474           87 GFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEE  166 (667)
Q Consensus        87 g~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~  166 (667)
                      .+. .+|..+++|+||+|||||||||++||+|.+                        +++..++|..+   ...+.|..
T Consensus        17 ~~~-~aw~~~~~G~gv~VaViDtGvd~~h~~l~~------------------------~~~~~~~~~~~---~~~~~d~~   68 (284)
T 1sh7_A           17 PLD-RNYNANFDGFGVTAYVIDTGVNNNHEEFGG------------------------RSVSGYDFVDN---DADSSDCN   68 (284)
T ss_dssp             SCC-SBCCCSCCCTTCEEEEEESCCCTTCTTTTT------------------------CEEEEEETTTT---BSCCCCSS
T ss_pred             Cch-hhhhcCCCCCCCEEEEEcCCCCCCChhHcC------------------------CccccccccCC---CCCCCCCC
Confidence            445 789999999999999999999999999973                        23445556432   23467889


Q ss_pred             CCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHH--CCCcEEEeCcCCCCC
Q 038474          167 GHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIA--DGVDIITISLGDTSA  235 (667)
Q Consensus       167 gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~--~g~dVin~SlG~~~~  235 (667)
                      ||||||||||+|..              .||||+|+|+.+|         .++++++|+|+++  .+++|||||||..  
T Consensus        69 gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~~~~Vin~S~G~~--  132 (284)
T 1sh7_A           69 GHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGG--  132 (284)
T ss_dssp             SHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCCSSEEEEECCCBS--
T ss_pred             CcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCCCCcEEEeCCCCC--
Confidence            99999999999863              6999999999999         3579999999997  4799999999987  


Q ss_pred             CCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCC-CcCCCCCceEEEcccc
Q 038474          236 VDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAG-FTSSIAPWLMSVAAST  285 (667)
Q Consensus       236 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~  285 (667)
                         ....+..++.++.++|++||+||||+|.... .+|+..|++|+|||++
T Consensus       133 ---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~  180 (284)
T 1sh7_A          133 ---QSTALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTT  180 (284)
T ss_dssp             ---CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEEC
T ss_pred             ---CCHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEec
Confidence               2367788888999999999999999997543 5677889999999864

>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP}

Probab=100.00  E-value=5.2e-38  Score=326.52  Aligned_cols=152  Identities=22%  Similarity=0.288  Sum_probs=126.4

Q ss_pred             CCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCC
Q 038474           87 GFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEE  166 (667)
Q Consensus        87 g~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~  166 (667)
                      .+. .+|..+++|+||+|+|||||||++||+|.+                        ++...++|..+   ..++.|..
T Consensus        19 ~~~-~~~~~~~~G~gv~VaViDtGid~~Hpdl~~------------------------~~~~~~d~~~~---~~~~~d~~   70 (278)
T 2b6n_A           19 PLD-NNYHTDYDGSGVTAFVIDTGVLNTHNEFGG------------------------RASSGYDFIDN---DYDATDCN   70 (278)
T ss_dssp             SCC-SEEECSCCCTTCEEEEEESCCCTTCGGGTT------------------------CEEEEEETTTT---BSCCCCSS
T ss_pred             Ccc-hhcccCCCCCCCEEEEEeCCCCCCChhHhc------------------------ccccCeecCCC---CCCCCCCC
Confidence            445 789999999999999999999999999973                        23444555432   23467899


Q ss_pred             CCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHH--CCCcEEEeCcCCCCC
Q 038474          167 GHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIA--DGVDIITISLGDTSA  235 (667)
Q Consensus       167 gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~--~g~dVin~SlG~~~~  235 (667)
                      ||||||||||+|..              .||||+|+|+.+|         .++++++|+|+++  .|++|||||||... 
T Consensus        71 gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~g~~Vin~S~G~~~-  135 (278)
T 2b6n_A           71 GHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGA-  135 (278)
T ss_dssp             SHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC-
T ss_pred             CcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCCCCeEEEECCCCCc-
Confidence            99999999999863              6999999999999         3578999999997  59999999999872 


Q ss_pred             CCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCC-CcCCCCCceEEEcccc
Q 038474          236 VDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAG-FTSSIAPWLMSVAAST  285 (667)
Q Consensus       236 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~  285 (667)
                          ...+..++.++.++|++||+||||+|.... .+|+..|++|+|||++
T Consensus       136 ----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~  182 (278)
T 2b6n_A          136 ----SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTT  182 (278)
T ss_dssp             ----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC
T ss_pred             ----CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeC
Confidence                367778888899999999999999997654 3577889999998864

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus}

Probab=100.00  E-value=1e-37  Score=323.98  Aligned_cols=151  Identities=21%  Similarity=0.260  Sum_probs=126.5

Q ss_pred             cCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCC
Q 038474           86 MGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDE  165 (667)
Q Consensus        86 ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~  165 (667)
                      +.+. .+|..+++|+||+|||||||||++||+|.+                        ++...++|..     ..+.|.
T Consensus        18 ~~~~-~a~~~~~~G~gv~VaViDtGvd~~h~~l~~------------------------~~~~~~~~~~-----~~~~d~   67 (276)
T 4dzt_A           18 LPLS-NSYTYTATGRGVNVYVIDTGIRTTHREFGG------------------------RARVGYDALG-----GNGQDC   67 (276)
T ss_dssp             SSCC-SCEECSCCCTTCEEEEEESCCCTTCGGGTT------------------------CEEEEEETTS-----SCSCCS
T ss_pred             CCcc-cceecCCCCCCcEEEEEccCCCCCChhHcc------------------------CeeccccCCC-----CCCCCC
Confidence            4555 789999999999999999999999999973                        2344445532     346688


Q ss_pred             CCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHC--CCcEEEeCcCCCC
Q 038474          166 EGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIAD--GVDIITISLGDTS  234 (667)
Q Consensus       166 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~--g~dVin~SlG~~~  234 (667)
                      .||||||||||+|..              .||||+|+|+.+|         ..+++++++|+++.  +++|||||||.. 
T Consensus        68 ~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~vin~S~g~~-  132 (276)
T 4dzt_A           68 NGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGG-  132 (276)
T ss_dssp             SSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEE-
T ss_pred             CCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCCCeEEEECCCCC-
Confidence            999999999999873              6999999999999         45689999999987  899999999986 


Q ss_pred             CCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCC-cCCCCCceEEEcccc
Q 038474          235 AVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGF-TSSIAPWLMSVAAST  285 (667)
Q Consensus       235 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~~p~vitVgA~~  285 (667)
                          ....+..++.++.++|++||+||||+|..... +|+..+++|+|||++
T Consensus       133 ----~~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~  180 (276)
T 4dzt_A          133 ----VSTALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATT  180 (276)
T ss_dssp             ----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC
T ss_pred             ----CCHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEEC
Confidence                24678888899999999999999999976543 477889999998854

>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ...

Probab=100.00  E-value=1.6e-37  Score=322.84  Aligned_cols=144  Identities=24%  Similarity=0.322  Sum_probs=120.4

Q ss_pred             hhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcch
Q 038474           92 ITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSN  171 (667)
Q Consensus        92 ~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGTh  171 (667)
                      .|+. .+|+||+|+|||||||++||+|.+                        ++...++|.      ..+.|..|||||
T Consensus        24 ~~~~-~~G~gv~VaViDsGvd~~H~~l~~------------------------~~~~~~~~~------~~~~d~~gHGT~   72 (279)
T 2pwa_A           24 YYDE-SAGQGSCVYVIDTGIEASHPEFEG------------------------RAQMVKTYY------YSSRDGNGHGTH   72 (279)
T ss_dssp             ECCT-TTTTTEEEEEEESCCCTTCGGGTT------------------------CEEEEEESS------SCSSCSSSHHHH
T ss_pred             cccC-CCCCCCEEEEEeCCCCCCChhHhC------------------------ccccccCCC------CCCCCCCCCHHH
Confidence            4543 689999999999999999999973                        233445554      236788999999


Q ss_pred             hhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCC-------cEEEeCcCCCCC
Q 038474          172 TASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGV-------DIITISLGDTSA  235 (667)
Q Consensus       172 VAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~-------dVin~SlG~~~~  235 (667)
                      |||||+|..              .||||+|+|+.+|         .++++++|+|++++++       +|||||||..  
T Consensus        73 vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vin~S~G~~--  136 (279)
T 2pwa_A           73 CAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG--  136 (279)
T ss_dssp             HHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE--
T ss_pred             HHHHHHhcc--------------cccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccEEEecCCCC--
Confidence            999999863              6999999999999         3578999999999887       9999999976  


Q ss_pred             CCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCC-CcCCCCCceEEEcccc
Q 038474          236 VDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAG-FTSSIAPWLMSVAAST  285 (667)
Q Consensus       236 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~  285 (667)
                         ....+..++.++.++|++||+||||+|.... .+|+..|++|+|||++
T Consensus       137 ---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~  184 (279)
T 2pwa_A          137 ---YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASD  184 (279)
T ss_dssp             ---CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEEC
T ss_pred             ---CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEec
Confidence               2467888888999999999999999997643 4677889999999864

>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1

Probab=100.00  E-value=2e-37  Score=345.21  Aligned_cols=169  Identities=15%  Similarity=0.155  Sum_probs=123.8

Q ss_pred             cCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCC---CCCCCCC
Q 038474           86 MGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR---DDGNGSA  162 (667)
Q Consensus        86 ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~---~~~~~~~  162 (667)
                      ++++ .+|+.+++|+||+|||||||||++||+|.+.-.                      ....++|..+   +.+...+
T Consensus        25 i~~~-~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~----------------------~~~~~d~~~~~~~p~~~~~~   81 (471)
T 1p8j_A           25 LNVK-EAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD----------------------PGASFDVNDQDPDPQPRYTQ   81 (471)
T ss_dssp             CCCH-HHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC----------------------GGGCEETTTTBSCCCCCCCT
T ss_pred             CChH-HHHhcCCCCCCCEEEEEeCCcCCCChhHhhccC----------------------ccCcccccCCCCCCCCccCC
Confidence            6777 999999999999999999999999999984200                      0012334322   1122245


Q ss_pred             CCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe-----chhHHHHHHHHHH-CCCcEEEeCcCCCCCC
Q 038474          163 IDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-----GEKILAAFDDAIA-DGVDIITISLGDTSAV  236 (667)
Q Consensus       163 ~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-----~~~i~~a~~~a~~-~g~dVin~SlG~~~~~  236 (667)
                      .|..||||||||||+|...++.   |     +.||||+|+|+.+|     .+++++|++++++ ++++|||||||.....
T Consensus        82 ~d~~gHGT~vAGiiaa~~~n~~---g-----~~GvAp~a~i~~~rv~~g~~~~~~~ai~~a~~~~~~~Vin~S~G~~~~~  153 (471)
T 1p8j_A           82 MNDNRHGTRCAGEVAAVANNGV---C-----GVGVAYNARIGGVRMLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDG  153 (471)
T ss_dssp             TCTTCHHHHHHHHHHCCSSSSS---S-----CCCTTTTSEEEEEECSSSCCCHHHHHHHHTSCTTTCCEEEECCBSCCSS
T ss_pred             CCCCCcHHHHHHHHHeeccCCC---C-----CEEECCCCeEEEEEccCCchhHHHHHHHhhhccCCCeEEEeccCcCCCC
Confidence            7889999999999999754322   2     28999999999999     5789999999999 9999999999986211


Q ss_pred             C---ChhhHHHHHHHHhh-----cCCeEEEEecCCCCCCCCC----cCCCCCceEEEcccc
Q 038474          237 D---LAHDVIAIGAFHAM-----TKGILTVNSAGNNGPKAGF----TSSIAPWLMSVAAST  285 (667)
Q Consensus       237 ~---~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVgA~~  285 (667)
                      .   .....+..++.++.     .+|++||+||||+|.....    ....++++|+|||++
T Consensus       154 ~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~  214 (471)
T 1p8j_A          154 KTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT  214 (471)
T ss_dssp             SCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEEC
T ss_pred             CcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEeccc
Confidence            1   11233444555554     3799999999999975322    123458999998864

>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A

Probab=100.00  E-value=3.2e-37  Score=320.80  Aligned_cols=145  Identities=23%  Similarity=0.302  Sum_probs=120.7

Q ss_pred             hhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcc
Q 038474           91 SITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGS  170 (667)
Q Consensus        91 ~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGT  170 (667)
                      .+|+.. +|+||+|||||||||++||+|.+                        ++...+.|..      ...|..||||
T Consensus        24 ~~~~~~-~G~gv~VaViDtGvd~~h~~l~~------------------------~~~~~~~~~~------~~~d~~gHGT   72 (279)
T 3f7m_A           24 YAYDTS-AGAGACVYVIDTGVEDTHPDFEG------------------------RAKQIKSYAS------TARDGHGHGT   72 (279)
T ss_dssp             EEECTT-TTTTEEEEEEESCCCTTCGGGTT------------------------CEEEEEECSS------SSSCSSSHHH
T ss_pred             eeecCC-CCCCCEEEEEcCCCCCCChhhcc------------------------ccccccCCCC------CCCCCCCcHH
Confidence            466666 99999999999999999999973                        2444455542      2338899999


Q ss_pred             hhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCC-------CcEEEeCcCCCC
Q 038474          171 NTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADG-------VDIITISLGDTS  234 (667)
Q Consensus       171 hVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g-------~dVin~SlG~~~  234 (667)
                      ||||||+|..              .||||+|+|+.+|         ..+++++++|+++++       ++|||||||.. 
T Consensus        73 ~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vin~S~g~~-  137 (279)
T 3f7m_A           73 HCAGTIGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGG-  137 (279)
T ss_dssp             HHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE-
T ss_pred             HHHHHHhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeEEEeCCCcC-
Confidence            9999999863              6999999999999         467999999999986       89999999975 


Q ss_pred             CCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCC-cCCCCCceEEEcccc
Q 038474          235 AVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGF-TSSIAPWLMSVAAST  285 (667)
Q Consensus       235 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~~p~vitVgA~~  285 (667)
                          ....+..++.++.++|++||+||||+|..... .++..|++|+|||++
T Consensus       138 ----~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~  185 (279)
T 3f7m_A          138 ----YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATD  185 (279)
T ss_dssp             ----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC
T ss_pred             ----ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecC
Confidence                34678888899999999999999999976543 477889999999854

>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A

Probab=100.00  E-value=8.3e-37  Score=338.76  Aligned_cols=154  Identities=19%  Similarity=0.216  Sum_probs=115.6

Q ss_pred             hhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeecc-CCC-CC-CCCCCCCCC
Q 038474           91 SITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYS-FRD-DG-NGSAIDEEG  167 (667)
Q Consensus        91 ~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~-~~~-~~-~~~~~D~~g  167 (667)
                      ..|..+++|+||+|+|||||||++||+|.+.                       .....+.+. .+. .+ ...+.|..|
T Consensus        17 ~aw~~~~tG~GV~VaVIDTGId~~HpdL~gr-----------------------~~~~~~~~v~~~dg~~f~~~~~D~~G   73 (546)
T 2qtw_B           17 DEYQPPDGGSLVEVYLLDTSIQSDHREIEGR-----------------------VMVTDFENVPEEDGTRFHRQASKCDS   73 (546)
T ss_dssp             -------CCTTSEEEEEESCCCTTSTTTTTT-----------------------EEEEEEECCCCCC-------CTTTTH
T ss_pred             hhcccCCCCCCcEEEEECCCCCCCChHHccc-----------------------ccccCcccccCCCCccccCCCCCCCC
Confidence            4788899999999999999999999999842                       111111111 100 00 134568899


Q ss_pred             CcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHC------CCcEEEeCcCC
Q 038474          168 HGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIAD------GVDIITISLGD  232 (667)
Q Consensus       168 HGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~------g~dVin~SlG~  232 (667)
                      |||||||||+|..              .||||+|+|+.+|         .++++++|+|+++.      +++|||||||+
T Consensus        74 HGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~~~~g~~VINmSlGg  139 (546)
T 2qtw_B           74 HGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAG  139 (546)
T ss_dssp             HHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHHSCCSCEEEEECEEE
T ss_pred             hHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhhccCCCeEEEecCCC
Confidence            9999999999873              6999999999999         45789999999984      89999999997


Q ss_pred             CCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCC-CcCCCCCceEEEccccC
Q 038474          233 TSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAG-FTSSIAPWLMSVAASTT  286 (667)
Q Consensus       233 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~  286 (667)
                      .     ....+..++.++.++|++||+||||+|.... .+|+..|++|+|||++.
T Consensus       140 ~-----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~  189 (546)
T 2qtw_B          140 G-----YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNA  189 (546)
T ss_dssp             E-----CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECT
T ss_pred             C-----CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecC
Confidence            5     2467788888999999999999999997643 45778899999999763

>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A*

Probab=100.00  E-value=5.2e-37  Score=344.28  Aligned_cols=169  Identities=17%  Similarity=0.209  Sum_probs=124.1

Q ss_pred             ccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCC
Q 038474           85 FMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAID  164 (667)
Q Consensus        85 ~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D  164 (667)
                      .++++ .+|+.+++|+||+|||||||||++||+|.+.-.                      ..+.++|..+........|
T Consensus        40 ~i~~~-~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~~----------------------~~~~~d~~~~~~~~~p~~d   96 (503)
T 2id4_A           40 DINVL-DLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC----------------------AEGSWDFNDNTNLPKPRLS   96 (503)
T ss_dssp             SCCCH-HHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC----------------------GGGCEETTTTBSCCCCCST
T ss_pred             ccChH-HHHhcCCCCCCeEEEEEeCCCCCCChhHhhccc----------------------ccCcccCCCCCCCCCCCCC
Confidence            46777 999999999999999999999999999985310                      0123444432211223357


Q ss_pred             CCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe-------chhHHHHHHHHHHCCCcEEEeCcCCCCCCC
Q 038474          165 EEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-------GEKILAAFDDAIADGVDIITISLGDTSAVD  237 (667)
Q Consensus       165 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~  237 (667)
                      ..||||||||||+|...++.   |     ..||||+|+|+.+|       ..+++++|+|+++.+ +|||||||......
T Consensus        97 ~~gHGT~vAGiiaa~~~n~~---~-----~~GvAp~a~i~~~rv~~~~~~~~~~~~ai~~a~~~~-~Iin~S~G~~~~~~  167 (503)
T 2id4_A           97 DDYHGTRCAGEIAAKKGNNF---C-----GVGVGYNAKISGIRILSGDITTEDEAASLIYGLDVN-DIYSCSWGPADDGR  167 (503)
T ss_dssp             TTTHHHHHHHHHHCCSSSSS---S-----CCCTTTTSEEEEEECTTSCCCHHHHHHHTTTTTTTC-SEEEECEESCCSSS
T ss_pred             CCChHHHHHHHHHhccCCCC---C-----cEEECCCCEEEEEEeeCCCCChHHHHHHHHhHhhcC-CEEEeCCCcCCCCc
Confidence            88999999999999753322   2     27999999999999       457899999999988 99999999862211


Q ss_pred             ---ChhhHHHHHHHHhh-----cCCeEEEEecCCCCCCCC--CcCC--CCCceEEEcccc
Q 038474          238 ---LAHDVIAIGAFHAM-----TKGILTVNSAGNNGPKAG--FTSS--IAPWLMSVAAST  285 (667)
Q Consensus       238 ---~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~G~~~~--~~~~--~~p~vitVgA~~  285 (667)
                         .....+..++.++.     .+|++||+||||+|....  .++.  .++++|+|||++
T Consensus       168 ~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~  227 (503)
T 2id4_A          168 HLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID  227 (503)
T ss_dssp             CCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC
T ss_pred             cccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeC
Confidence               12345566666665     479999999999997532  2222  467899998864

>3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria}

Probab=100.00  E-value=9.9e-33  Score=316.71  Aligned_cols=148  Identities=16%  Similarity=0.212  Sum_probs=102.5

Q ss_pred             cCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCC
Q 038474           86 MGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDE  165 (667)
Q Consensus        86 ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~  165 (667)
                      |.+. .+|+.+++|+||+|||||||||++||||.++ +                      ..+.++|..+..+.....|+
T Consensus        57 inv~-~aw~~g~tG~GV~VaViDtGid~~HpDL~~n-~----------------------~~~~~~~~~~~~dp~p~~~~  112 (600)
T 3hjr_A           57 LNLW-WAHRTGVLGQGVNVAVVDDGLAIAHPDLADN-V----------------------RPGSKNVVTGSDDPTPTDPD  112 (600)
T ss_dssp             CCCH-HHHHHTCSCTTCEEEEESSCCCTTCTTTGGG-B----------------------CSCCBCTTTSSSCCCCCSTT
T ss_pred             cCHH-HHHHcCCCCCCeEEEEEcCCCCCCChhHhhc-c----------------------ccCcceeecCCCCCCCCCCC
Confidence            4555 8999999999999999999999999999742 0                      11222332221122334467


Q ss_pred             CCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHH-HHHHHCCCcEEEeCcCCCCC
Q 038474          166 EGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAF-DDAIADGVDIITISLGDTSA  235 (667)
Q Consensus       166 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~-~~a~~~g~dVin~SlG~~~~  235 (667)
                      +||||||||||||..    +-.|.     .||||+|+|+.+|         .++++.++ +++..++++|+|+|||....
T Consensus       113 ~gHGThVAGiIAa~~----n~~g~-----~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~S~G~~~~  183 (600)
T 3hjr_A          113 TAHGTSVSGIIAAVD----NAIGT-----KGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYGMSVV  183 (600)
T ss_dssp             CCHHHHHHHHHHCCS----SSSSC-----CCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEECCCCCCS
T ss_pred             CChHHHHHHHHhEeC----CCCCc-----EEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEecccCcccc
Confidence            899999999999863    11222     8999999999999         34555554 56778899999999997532


Q ss_pred             CCCh-----hhHHHHHHHHh--hcCCeEEEEecCCCCC
Q 038474          236 VDLA-----HDVIAIGAFHA--MTKGILTVNSAGNNGP  266 (667)
Q Consensus       236 ~~~~-----~~~~~~a~~~a--~~~Gi~vV~AAGN~G~  266 (667)
                      ....     ...+..++..+  ..+|+++|+||||.+.
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~  221 (600)
T 3hjr_A          184 DPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFN  221 (600)
T ss_dssp             SCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSS
T ss_pred             CCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccc
Confidence            2111     12222233222  3589999999999764

>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A

Probab=99.82  E-value=3e-21  Score=217.41  Aligned_cols=94  Identities=19%  Similarity=0.318  Sum_probs=76.3

Q ss_pred             ceeecccCcEEEEEe----chhHHHHHHHHHH---CCCcEEEeCcCCCCCC--CChhhHHHHHHHHhhcCCeEEEEecCC
Q 038474          193 MARGGVPSARISAYR----GEKILAAFDDAIA---DGVDIITISLGDTSAV--DLAHDVIAIGAFHAMTKGILTVNSAGN  263 (667)
Q Consensus       193 ~~~GvAP~A~l~~~k----~~~i~~a~~~a~~---~g~dVin~SlG~~~~~--~~~~~~~~~a~~~a~~~Gi~vV~AAGN  263 (667)
                      .+.||||+|+|+.|+    ..+++++|+||++   ++++|||||||.....  ......+..++..|..+||+||+||||
T Consensus       273 ~~~gvAp~a~i~~~~~~~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi~vv~AsGd  352 (552)
T 1t1e_A          273 VAGALAPGAKIAVYFAPNTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGD  352 (552)
T ss_dssp             HHHHHCTTSEEEEEECCSSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEECCS
T ss_pred             hhhccCCCCeEEEEEcCCCCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCeEEEEecCC
Confidence            348999999999999    4679999999998   7999999999987221  112346677777888999999999999


Q ss_pred             CCCCC--------CCcCCCCCceEEEccccC
Q 038474          264 NGPKA--------GFTSSIAPWLMSVAASTT  286 (667)
Q Consensus       264 ~G~~~--------~~~~~~~p~vitVgA~~~  286 (667)
                      +|...        ..+++.+|||++|||++.
T Consensus       353 ~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~  383 (552)
T 1t1e_A          353 SGSTDGEQDGLYHVDFPAASPYVLACGGTRL  383 (552)
T ss_dssp             BGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred             CCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence            99643        346778899999999864

>1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A*

Probab=99.68  E-value=2.2e-17  Score=177.45  Aligned_cols=92  Identities=18%  Similarity=0.162  Sum_probs=73.9

Q ss_pred             eecccCcEEEEEe--------chhHHHHHHHHHH-CCCcEEEeCcCCCCCC---CChhhHHHHHHHHhhcCCeEEEEecC
Q 038474          195 RGGVPSARISAYR--------GEKILAAFDDAIA-DGVDIITISLGDTSAV---DLAHDVIAIGAFHAMTKGILTVNSAG  262 (667)
Q Consensus       195 ~GvAP~A~l~~~k--------~~~i~~a~~~a~~-~g~dVin~SlG~~~~~---~~~~~~~~~a~~~a~~~Gi~vV~AAG  262 (667)
                      ..+||+++++.|+        .++++++|+||++ ++++|||||||.....   ......+..++.+|..+||+||+|||
T Consensus        90 g~~aP~a~~~~~~~~~~~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~AsG  169 (372)
T 1ga6_A           90 GSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSG  169 (372)
T ss_dssp             HHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             hhcCCCCcEEEEEeCCCCCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence            4578999999999        2579999999998 8999999999986211   12235677777888889999999999


Q ss_pred             CCCCCCC-------------CcCCCCCceEEEccccC
Q 038474          263 NNGPKAG-------------FTSSIAPWLMSVAASTT  286 (667)
Q Consensus       263 N~G~~~~-------------~~~~~~p~vitVgA~~~  286 (667)
                      |+|...+             .+|+.+|||++||+++.
T Consensus       170 d~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~  206 (372)
T 1ga6_A          170 DEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL  206 (372)
T ss_dssp             SBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred             CCCCccccccCccCCccCCcCCCCCCCCeEEEEeeec
Confidence            9997532             45678899999999874

>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P

Probab=99.00  E-value=3.4e-10  Score=100.68  Aligned_cols=75  Identities=8%  Similarity=0.120  Sum_probs=63.3

Q ss_pred             CEEEEeCCCCCCCCCchhHHHHHHHHHhcCCCCcccEEEEecceeeEEEEEeCHHHHHHHHcCCCeeEEEcCccccc
Q 038474            1 VYIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQL   77 (667)
Q Consensus         1 ~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~v~~~~~~~~   77 (667)
                      .|||+|++... +.....||+|+.+.+.+ +..+.+++|+|++.|+||+++|+++++++|+++|+|.+|++|+.++.
T Consensus        39 ~YIV~lk~~~~-~~~~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v~~  113 (114)
T 2w2n_P           39 TYVVVLKEETH-LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA  113 (114)
T ss_dssp             EEEEEECTTCC-HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred             cEEEEECCCCC-HHHHHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceEec
Confidence            49999998764 23456788888777765 34567899999999999999999999999999999999999998764

>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B

Probab=98.80  E-value=1.3e-08  Score=84.49  Aligned_cols=70  Identities=16%  Similarity=0.214  Sum_probs=55.8

Q ss_pred             CEEEEeCCCCCCCCCchhHHHHHHHHHhcCCCCcccEEEEecceeeEEEEEeCHHHHHHHHcCCCeeEEEcCcccccCCC
Q 038474            1 VYIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQLHTT   80 (667)
Q Consensus         1 ~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~v~~~~~~~~~~~   80 (667)
                      .|||.|++...  .  ...|..++..      .+.+++|+|++ |+||+++++++++++|+++|+|.+|++|..++++++
T Consensus        10 ~YIV~~k~~~~--~--~~~~~~~~~~------~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v~~~tt   78 (80)
T 3cnq_P           10 KYIVGFKQGFK--S--CAKKEDVISE------KGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYRALSA   78 (80)
T ss_dssp             EEEEEECTTCC--S--HHHHHHHHHT------TTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEEEECCC
T ss_pred             CEEEEECCCCC--h--HHHHHHHHHH------cCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEEEEeee
Confidence            39999998764  1  2233333322      34689999988 999999999999999999999999999999998876


Q ss_pred             C
Q 038474           81 R   81 (667)
Q Consensus        81 ~   81 (667)
                      .
T Consensus        79 ~   79 (80)
T 3cnq_P           79 T   79 (80)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P

Probab=98.56  E-value=6.6e-08  Score=86.98  Aligned_cols=75  Identities=8%  Similarity=0.120  Sum_probs=56.5

Q ss_pred             CEEEEeCCCCCCCCCchhHHHHHHHHHhcCCCCcccEEEEecceeeEEEEEeCHHHHHHHHcCCCeeEEEcCccccc
Q 038474            1 VYIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQL   77 (667)
Q Consensus         1 ~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~v~~~~~~~~   77 (667)
                      .|||.|++... +.....|.+++.+.+.+ ...+.++.|+|++.||||+++++++++++|+++|+|.+|++|..++.
T Consensus        49 ~YIV~~K~~~~-~~~~~~~~~~l~~~~~~-r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v~a  123 (124)
T 2qtw_A           49 TYVVVLKEETH-LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA  123 (124)
T ss_dssp             EEEEEECTTCC-HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred             CEEEEECCCCC-HHHHHHHHHHHHHHHhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceEec
Confidence            49999998764 22233344444332222 22456899999999999999999999999999999999999988764

>3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A*

Probab=98.48  E-value=5.9e-08  Score=108.61  Aligned_cols=93  Identities=14%  Similarity=0.171  Sum_probs=64.4

Q ss_pred             eeecccCcEEEEEe-------chhHHHHHHHHH--HCCCcEEEeCcCCCCCC--CChhhHHHHHHHHhhcCCeEEEEecC
Q 038474          194 ARGGVPSARISAYR-------GEKILAAFDDAI--ADGVDIITISLGDTSAV--DLAHDVIAIGAFHAMTKGILTVNSAG  262 (667)
Q Consensus       194 ~~GvAP~A~l~~~k-------~~~i~~a~~~a~--~~g~dVin~SlG~~~~~--~~~~~~~~~a~~~a~~~Gi~vV~AAG  262 (667)
                      +.+++++..+..|.       ...++..+++..  .+-++|||+|||.....  ..+...+...+..+..+||.|++|+|
T Consensus       261 a~a~~~~i~~~~~~~~g~~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~ASG  340 (544)
T 3edy_A          261 LMSAGANISTWVYSSPGRHEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASG  340 (544)
T ss_dssp             HHHHSTTSEEEEECCCSCCTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             HhccCCCceEEEEecCCcccccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence            34566667776765       234555555433  24589999999987321  11234556666778889999999999


Q ss_pred             CCCCCC----------CCcCCCCCceEEEccccC
Q 038474          263 NNGPKA----------GFTSSIAPWLMSVAASTT  286 (667)
Q Consensus       263 N~G~~~----------~~~~~~~p~vitVgA~~~  286 (667)
                      |+|...          ..+++.+|||++||+++.
T Consensus       341 D~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l  374 (544)
T 3edy_A          341 DSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF  374 (544)
T ss_dssp             SSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred             CCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence            999753          246778899999999863

>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A

Probab=98.33  E-value=9.9e-07  Score=72.32  Aligned_cols=69  Identities=16%  Similarity=0.198  Sum_probs=52.4

Q ss_pred             CEEEEeCCCCCCCCCchhHHHHHHHHHhcCCCCcccEEEEe-cceeeEEEEEeCHHHHHHHHcC--CCeeEEEcCccccc
Q 038474            1 VYIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSY-KRSFNGFAAKLTDHEIQKLAGM--KGVVSVFPSRTLQL   77 (667)
Q Consensus         1 ~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y-~~~~ng~s~~l~~~~~~~L~~~--p~V~~v~~~~~~~~   77 (667)
                      .|||.|++...  ......|..+++..+      .++.|.| ..+|+||+++++++.+++|+++  |.|.+||+|+.+++
T Consensus         4 sYIV~lk~~~~--~~~~~~~~~~~~~~g------g~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v~~   75 (76)
T 1v5i_B            4 KFIVIFKNDVS--EDKIRETKDEVIAEG------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVAHA   75 (76)
T ss_dssp             EEEEEECTTCC--HHHHHHHHHHHHHHT------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEEEC
T ss_pred             eEEEEECCCCC--HHHHHHHHHHHHhhC------CceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEEeC
Confidence            39999998763  222223333333332      3688999 4899999999999999999999  89999999998764

>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}

Probab=97.83  E-value=8.2e-05  Score=71.72  Aligned_cols=90  Identities=17%  Similarity=0.133  Sum_probs=65.3

Q ss_pred             eeEEEccCCCCCCCCCcccc-c-c-------ccccEEEEee------chhhHHHHhcCceEEEEecCCC-CC--cc----
Q 038474          318 FPLLYGKGVTNSSSCTEDYA-N-L-------VKGNIVLCDE------FSGYHVAREAGAAGLILKDNRL-YN--VS----  375 (667)
Q Consensus       318 ~~lv~~~~~~~~~~C~~~~~-~-~-------~~gkIvl~~~------~~~~~~~~~~Ga~g~i~~~~~~-~~--~~----  375 (667)
                      -.++........+.|.+... . .       .+|||+|++|      .+|..+|+++||.++|+||+.. ..  ..    
T Consensus        72 G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~  151 (194)
T 3icu_A           72 GVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHP  151 (194)
T ss_dssp             EEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCT
T ss_pred             EEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCC
Confidence            35666554334568998665 1 1       4689999999      3799999999999999999852 11  11    


Q ss_pred             cccccceEEeChhhHHHHHHhhhhchhhhhcccCCCCceEEE
Q 038474          376 LILPFPASTVTPDKFNSIIHQFYQVIMNFLRSSIILNPQAEI  417 (667)
Q Consensus       376 ~~~~iP~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~i  417 (667)
                      ....||+++|+..+|+.|++        .+...  ...+++|
T Consensus       152 ~~~~IPsv~Is~~~G~~L~~--------~L~~G--~~Vtvti  183 (194)
T 3icu_A          152 GAVDIVAIMIGNLKGTKILQ--------SIQRG--IQVTMVI  183 (194)
T ss_dssp             TCCSSEEEEECHHHHHHHHH--------HHHTT--CCEEEEE
T ss_pred             CCCceeEEEECHHHHHHHHH--------HHHCC--CeEEEEE
Confidence            12359999999999999999        77655  4555555

>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B

Probab=97.20  E-value=0.00061  Score=53.74  Aligned_cols=45  Identities=16%  Similarity=0.174  Sum_probs=40.6

Q ss_pred             CCCcccEEEEecceeeEEEEEeCHHHHHHHHcCCCeeEEEcCcccc
Q 038474           31 SSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQ   76 (667)
Q Consensus        31 ~~~~~~v~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~v~~~~~~~   76 (667)
                      +..+.++.|+| ..+++++++||++.+++|+++|+|.+|++|...+
T Consensus        19 ~~~gG~i~~~~-~~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~   63 (65)
T 2z30_B           19 LGIGGHIVYQF-KLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV   63 (65)
T ss_dssp             GGGTCEEEEEC-SSSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred             HHCCCEEEEEe-cCCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence            34567899999 8899999999999999999999999999998764

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.75  E-value=0.026  Score=49.99  Aligned_cols=71  Identities=17%  Similarity=0.178  Sum_probs=52.3

Q ss_pred             eEEEEEEEEecCCCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEE-cCCeEEEee
Q 038474          586 TIKFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWF-DGSHIVRSP  664 (667)
Q Consensus       586 ~~~~~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~G~l~w~-~~~h~vr~P  664 (667)
                      +.+.+-+++|+|..+..|+.....|    .+|+|+...+ ++||++.++|+|.+..   ...+.+.|... +++..+..+
T Consensus        42 ~~~~~~~l~N~g~~~~~f~~~~~~~----F~i~P~~g~L-~pg~~~~i~V~F~P~~---~g~~~~~l~v~~~~g~~~~v~  113 (122)
T 2ys4_A           42 STQKILLVRNIGNKNAVFHIKTCRP----FSIEPAIGTL-NVGESMQLEVEFEPQS---VGDHSGRLIVCYDTGEKVFVS  113 (122)
T ss_dssp             CEEEEEEEECCSSSCEEEEEECCTT----EEEESSEEEE-CTTCEEEEEEEECCSS---SBCCCCBCEEEESSSCEECCE
T ss_pred             eEEEEEEEEECCCCCEEEEEecCCC----eEEECCcCEE-CCCCEEEEEEEEEcCC---CccEEEEEEEEECCCCEEEEE
Confidence            5677778899999988898776543    6678999999 8999999999999875   23456666544 444444433

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*

Probab=94.50  E-value=0.05  Score=58.87  Aligned_cols=59  Identities=17%  Similarity=0.151  Sum_probs=48.7

Q ss_pred             ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCCcc------cccccceEEeChhhHHHHHHh
Q 038474          338 NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYNVS------LILPFPASTVTPDKFNSIIHQ  396 (667)
Q Consensus       338 ~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~------~~~~iP~~~i~~~~g~~l~~~  396 (667)
                      .+++|||||+++     ..|..+|+++||+|+|++++......      ....+|.+.|+.++++.|+++
T Consensus       111 ~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~  180 (421)
T 2ek8_A          111 KDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAAN  180 (421)
T ss_dssp             SCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHH
T ss_pred             CCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHH
Confidence            479999999987     57899999999999999998643211      224599999999999999983

>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}

Probab=93.79  E-value=0.13  Score=56.09  Aligned_cols=79  Identities=19%  Similarity=0.194  Sum_probs=54.0

Q ss_pred             CceeeEEEccCCCCCCCCCccccccccccEEEEeec--------------hh----hHHHHhcCceEEEEecCCCCCc--
Q 038474          315 GKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEF--------------SG----YHVAREAGAAGLILKDNRLYNV--  374 (667)
Q Consensus       315 ~~~~~lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~~--------------~~----~~~~~~~Ga~g~i~~~~~~~~~--  374 (667)
                      +...+|++..+..   .|......+++|||||+++.              .|    ..+|+++||+|+|++++.....  
T Consensus       105 ~vta~lV~v~~~~---~~~~~~~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~  181 (444)
T 3iib_A          105 GLSATIVRFDTLQ---DLQNAEAGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRM  181 (444)
T ss_dssp             CEEEEEEEESSHH---HHHTSCTTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSC
T ss_pred             CeEEEEEecCCHH---HHhhccccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCccccc
Confidence            4567888765321   12221115899999999871              11    3468999999999999744211  


Q ss_pred             ----c-----cccccceEEeChhhHHHHHHh
Q 038474          375 ----S-----LILPFPASTVTPDKFNSIIHQ  396 (667)
Q Consensus       375 ----~-----~~~~iP~~~i~~~~g~~l~~~  396 (667)
                          .     ....+|++.|+.++++.|+++
T Consensus       182 ~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~  212 (444)
T 3iib_A          182 AHTGMMRYEEGVTAIPAAAISNPDADLINAM  212 (444)
T ss_dssp             CCCCBCCCCTTSCCCCEEEECHHHHHHHHHH
T ss_pred             ccCCccccCCCCCCCCeEEecHHHHHHHHHH
Confidence                1     123599999999999999983

>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A

Probab=92.96  E-value=0.11  Score=59.07  Aligned_cols=75  Identities=13%  Similarity=0.130  Sum_probs=55.0

Q ss_pred             eeeEEEccCCCCCCCCCcccc----ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCC-c------------
Q 038474          317 MFPLLYGKGVTNSSSCTEDYA----NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYN-V------------  374 (667)
Q Consensus       317 ~~~lv~~~~~~~~~~C~~~~~----~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~-~------------  374 (667)
                      ..+||+.+.     .| ...+    .+++|||||+.+     .+|..+|+++||+|+|++++.... .            
T Consensus       109 ~g~lV~vg~-----G~-~~D~~~l~vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~  182 (640)
T 3kas_A          109 TGKLVHANF-----GT-KKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAH  182 (640)
T ss_dssp             EECEEECTT-----CC-HHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECC
T ss_pred             EEEEEEecC-----CC-hhhHHHhhcccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccc
Confidence            467888643     22 2233    279999999987     578999999999999999975321 0            


Q ss_pred             -----c-------------------cccccceEEeChhhHHHHHHhh
Q 038474          375 -----S-------------------LILPFPASTVTPDKFNSIIHQF  397 (667)
Q Consensus       375 -----~-------------------~~~~iP~~~i~~~~g~~l~~~~  397 (667)
                           +                   ....||+..|+.++++.|++.+
T Consensus       183 ~~~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l  229 (640)
T 3kas_A          183 LGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNM  229 (640)
T ss_dssp             SSSSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTE
T ss_pred             cCCCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHc
Confidence                 0                   0124899999999999999843

>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...

Probab=92.74  E-value=0.11  Score=59.66  Aligned_cols=31  Identities=32%  Similarity=0.330  Sum_probs=28.9

Q ss_pred             cccccEEEEee-----chhhHHHHhcCceEEEEecC
Q 038474          339 LVKGNIVLCDE-----FSGYHVAREAGAAGLILKDN  369 (667)
Q Consensus       339 ~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~  369 (667)
                      +++|||||+++     .+|..+|+++||+|+|+|++
T Consensus       152 ~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~d  187 (707)
T 3fed_A          152 NCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSD  187 (707)
T ss_dssp             CCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECC
T ss_pred             CCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcC
Confidence            69999999997     68999999999999999986

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}

Probab=90.44  E-value=0.18  Score=61.32  Aligned_cols=24  Identities=17%  Similarity=0.440  Sum_probs=22.9

Q ss_pred             CCCCCCcEEEEEcCCCCCCCcCCC
Q 038474           96 RTVESDLIVGVIDTGIWPQSESFS  119 (667)
Q Consensus        96 ~~~G~gv~VgViDtGid~~Hp~f~  119 (667)
                      .+.|+||+|||+|||||+.+|.|+
T Consensus        32 ~ydGrgv~iai~DtGVDP~a~glq   55 (1354)
T 3lxu_X           32 EYDGRDVTIAIFDSGVDPRATGLE   55 (1354)
T ss_dssp             TCSSTTCEEEEEESCCCTTSTTSS
T ss_pred             CCCCCccEEEEEeCCCCCCCCcce
Confidence            689999999999999999999997

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*

Probab=88.23  E-value=0.33  Score=52.66  Aligned_cols=32  Identities=28%  Similarity=0.275  Sum_probs=26.9

Q ss_pred             CCCCcccccCCCCCCCCCCCCCCCceeeCCccEEeeeCCC
Q 038474          426 SDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPL  465 (667)
Q Consensus       426 ~~~~~~a~FSSrGPt~~~~~~lKPDI~APG~~I~Sa~~~~  465 (667)
                      ...+.++.||++||..        ||+|||++|+++++.+
T Consensus       181 ~~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~g  212 (441)
T 1y9z_A          181 DSNLDHAAFSQYTDQV--------EISGPGEAILSTVTVG  212 (441)
T ss_dssp             CTTCCBCTTSCCCTTE--------EEEEECSSEEEECSTT
T ss_pred             CCCCCCCccccCCCce--------EEEeccCCeeccccCC
Confidence            3456789999999854        9999999999998753

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.52  E-value=0.63  Score=39.93  Aligned_cols=66  Identities=6%  Similarity=-0.012  Sum_probs=47.9

Q ss_pred             eEEEEEEEEecCCCCeeEEEEEec-CCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEE
Q 038474          586 TIKFPRTVTNIGLPNSTYKARILQ-NSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWF  655 (667)
Q Consensus       586 ~~~~~rtvtNvg~~~~tY~~~v~~-p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~G~l~w~  655 (667)
                      ..+.+-+++|.|+.+..|+..... +.+...+++|++-.+ .+|+++.++|+|.+...   ..+.=.|++.
T Consensus        27 ~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~~~~---g~f~~~i~v~   93 (112)
T 2e6j_A           27 AHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSSIIL---GNFEEEFLVN   93 (112)
T ss_dssp             CEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECCCCC---EEEEEEECEE
T ss_pred             EEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEECCCc---ceEEEEEEEE
Confidence            455667789999999999984321 223347778999988 89999999999998642   3344556665

>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}

Probab=81.85  E-value=6  Score=34.32  Aligned_cols=53  Identities=9%  Similarity=0.060  Sum_probs=43.9

Q ss_pred             EEEEEEEEecCCCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeec
Q 038474          587 IKFPRTVTNIGLPNSTYKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKG  641 (667)
Q Consensus       587 ~~~~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~  641 (667)
                      -..+-.+.|....+.+|.++++.++++++. .|..+++ ++||+.++.|.+.++.
T Consensus        33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v-~~g~~~~~~v~v~~~~   85 (118)
T 2r39_A           33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQV-EPGEVLNLPMSLGADP   85 (118)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEE-CTTCEEEEEEEEEECG
T ss_pred             EEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEE-CCCCEEEEEEEEEECh
Confidence            356778899999999999999988776653 3667888 8999999999999865

>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}

Probab=81.04  E-value=10  Score=33.95  Aligned_cols=79  Identities=16%  Similarity=-0.005  Sum_probs=53.1

Q ss_pred             eEEEEEEEEecCCCCeeEEEEEecC----CceEEEEEcCEEEEeeCCcEEEEEEEEEeecC------CCCCeEEEEEEEE
Q 038474          586 TIKFPRTVTNIGLPNSTYKARILQN----SKISVNVVPEVLSFRSLNEKKSFIVTVTGKGL------ASGSIVSAALVWF  655 (667)
Q Consensus       586 ~~~~~rtvtNvg~~~~tY~~~v~~p----~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~------~~~~~~~G~l~w~  655 (667)
                      ..+-+-|++|.|.-+.+|++.....    ..--++|+|..-++ .||++..++|++.....      ....-...-|++.
T Consensus        44 ~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL~  122 (140)
T 3qbt_B           44 LQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLH  122 (140)
T ss_dssp             CEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEEE
T ss_pred             eeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEEccCcccccccchhhhheeEEEE
Confidence            3455667889999999999975321    11236678999988 89999999999986431      1112345566665


Q ss_pred             -cCCeEEEeeE
Q 038474          656 -DGSHIVRSPI  665 (667)
Q Consensus       656 -~~~h~vr~P~  665 (667)
                       +++....+|+
T Consensus       123 Ve~G~d~fI~v  133 (140)
T 3qbt_B          123 LDRGKDYFLTI  133 (140)
T ss_dssp             ETTSCEEEEEE
T ss_pred             eecCCcEEEEE
Confidence             5555555555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	667
d1v6ca_	435	c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud	5e-19
d1wmda2	318	c.41.1.1 (A:1-318) Alkaline serine protease kp-43,	1e-04
d1r6va_	671	c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni	3e-04

>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease Apa1
species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]

 Score = 87.8 bits (216), Expect = 5e-19
 Identities = 74/474 (15%), Positives = 134/474 (28%), Gaps = 95/474 (20%)

Query: 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGN 159
            +  + +ID+G                          G N +                  
Sbjct: 22  GNRTICIIDSGYDRSHNDL------------NANNVTGTNNSGT-------------GNW 56

Query: 160 GSAIDEEGHGSNTASTAAGNKVKDASFLGIGQG----MARGGVPSARISAYRGEKILAAF 215
               +   HG++ A T A     +   +G+       +    V +     Y    + A  
Sbjct: 57  YQPGNNNAHGTHVAGTIAAIA-NNEGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAID 115

Query: 216 DDAIADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIA 275
               + G +++T+SLG + +     + +     + +    L + +AGN G  +    +  
Sbjct: 116 TCVNSGGANVVTMSLGGSGSTTTERNALNTHYNNGV----LLIAAAGNAGDSSYSYPASY 171

Query: 276 PWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKGKMFPLLYGKGVTNSSSCTED 335
             +MSVAA  ++          +   I         T       L        S      
Sbjct: 172 DSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFS--- 228

Query: 336 YANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSIIH 395
              +V  N +     S       A A G +                 +  T +  +    
Sbjct: 229 -NGVVPHNRLTPSGTSYAPAPINASATGAL-----------------AECTVNGTSFSCG 270

Query: 396 QFYQVIMNFLRSSIILNPQAEILKTSVIKDSDA-PIVASFSSRGPNKYVPDIL--KPDIS 452
                I    R     +   EI  T   K + A  I+   +S  P    P ++    DI+
Sbjct: 271 NMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDIT 330

Query: 453 APGVNILAAY----SPLAPISRDIEDERHVKYNIISGTSMACPHAA--------AWP--- 497
            P V++  A           S  + ++ +  Y   +GTSMA PH +          P   
Sbjct: 331 VPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECS 390

Query: 498 --------MNSSKNTQAE---FAYGSGHINPVKATNPGLVYEAFKQDYINMLCS 540
                     ++ +          G G IN V A             Y++  C+
Sbjct: 391 ASQVRAALNATADDLSVAGRDNQTGYGMINAVAAK-----------AYLDESCT 433

>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease kp-43, N-terminal domain
species: Bacillus sp. KSM-KP43 [TaxId: 109322]

 Score = 42.2 bits (97), Expect = 1e-04
 Identities = 47/271 (17%), Positives = 83/271 (30%), Gaps = 27/271 (9%)

Query: 100 SDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGN 159
              IV V DTG+       S                   +     KI     Y+     N
Sbjct: 22  QGQIVAVADTGLDTGRNDSSM------------------HEAFRGKITA--LYALGRTNN 61

Query: 160 GSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYRGEKILAAFDDAI 219
            +  D  GHG++ A +  GN   +         + +  + S          +   F  A 
Sbjct: 62  AN--DTNGHGTHVAGSVLGNGSTNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAY 119

Query: 220 ADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLM 279
           + G  I T S G         D   +   +     +  + +AGN GP  G  S+      
Sbjct: 120 SAGARIHTNSWGAAVNGAYTTDSRNV-DDYVRKNDMTILFAAGNEGPNGGTISAPGTAKN 178

Query: 280 SVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHKGKMFP--LLYGKGVTNSSSCTEDYA 337
           ++    T+ L        +    V ++S    T  G++ P  +  G  + ++ S     +
Sbjct: 179 AITVGATENLRPSFGSYADNINHVAQFSSRGPTKDGRIKPDVMAPGTFILSARSSLAPDS 238

Query: 338 NLVKGNIVLCDEFSGYHVA--REAGAAGLIL 366
           +    +        G  +A    AG    + 
Sbjct: 239 SFWANHDSKYAYMGGTSMATPIVAGNVAQLR 269

>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Fervidolysin
species: Fervidobacterium pennivorans [TaxId: 93466]

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 28/135 (20%), Positives = 41/135 (30%), Gaps = 35/135 (25%)

Query: 421 SVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIEDERHV-- 478
           ++        VA FSSR             + APGV IL+       I  +  +E     
Sbjct: 318 ALDYYGGTFRVAGFSSRSDG--------VSVGAPGVTILSTVPGEDSIGYEGHNENVPAT 369

Query: 479 ---KYNIISGTSMACPHAA--------AWP-----------MNSSKNTQAE---FAYGSG 513
               Y+   GTSMA PH           +P            N++ +          G G
Sbjct: 370 NGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWDHDTGYG 429

Query: 514 HINPVKATNPGLVYE 528
            +    A    L  +
Sbjct: 430 LVKLDAALQGPLPTQ 444

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	667
d1r6va_	671	Fervidolysin {Fervidobacterium pennivorans [TaxId:	100.0
d1dbia_	280	Thermostable serine protease {Bacillus sp., AK.1 [	100.0
d1thma_	279	Thermitase {Thermoactinomyces vulgaris [TaxId: 202	100.0
d1v6ca_	435	Alkaline serine protease Apa1 {Pseudoalteromonas s	100.0
d1r0re_	274	Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1	100.0
d1to2e_	281	Subtilisin {Bacillus amyloliquefaciens, Novo/BPN'	100.0
d1gcia_	269	Subtilisin {Bacillus lentus [TaxId: 1467]}	100.0
d2pwaa1	279	Proteinase K {Fungus (Tritirachium album), strain	100.0
d1wmda2	318	Alkaline serine protease kp-43, N-terminal domain	100.0
d2ixta1	309	Sphericase {Bacillus sphaericus [TaxId: 1421]}	100.0
d2id4a2	339	Kexin, N-terminal domain {Baker's yeast (Saccharom	99.96
d1p8ja2	334	Furin, N-terminal domain {Mouse (Mus musculus) [Ta	99.96
d1t1ga_	357	Serine-carboxyl proteinase, SCP {Bacillus novosp.	99.92
d1ga6a_	369	Serine-carboxyl proteinase, SCP {Pseudomonas sp.,	99.85
d1scjb_	71	Subtilisin prosegment {Bacillus subtilis [TaxId: 1	98.52
d1v5ib1	72	Proteinase A inhibitor 1, POIA1 {Oyster mushroom (	98.27
d1de4c2	193	Transferrin receptor ectodomain, apical domain {Hu	96.29
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	96.0
d3bi1a2	233	Glutamate carboxypeptidase II {Human (Homo sapiens	94.64

>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Fervidolysin
species: Fervidobacterium pennivorans [TaxId: 93466]

Probab=100.00  E-value=6.3e-43  Score=402.12  Aligned_cols=212  Identities=23%  Similarity=0.251  Sum_probs=154.4

Q ss_pred             ccEEEEecceeeEEEEEeCHHHHH----HH--HcCCCeeEEEcCcccccCCC----------------------------
Q 038474           35 NILVRSYKRSFNGFAAKLTDHEIQ----KL--AGMKGVVSVFPSRTLQLHTT----------------------------   80 (667)
Q Consensus        35 ~~v~~~y~~~~ng~s~~l~~~~~~----~L--~~~p~V~~v~~~~~~~~~~~----------------------------   80 (667)
                      .++++.+ ..++.+.++++...++    .+  .++|+|++|+|+..+++...                            
T Consensus        53 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (671)
T d1r6va_          53 GKVVLEL-PQIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEEL  131 (671)
T ss_dssp             CEEEEEE-GGGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTT
T ss_pred             CEEEEEe-cccceEEEEcCchhHHHHHHHHHHhcCCCceEECcceeEeeccccccCCCccccccccccccccccCcCccc
Confidence            4677777 5677788888754332    22  35799999999865543210                            


Q ss_pred             --CCcc--ccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCC-
Q 038474           81 --RSWD--FMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR-  155 (667)
Q Consensus        81 --~s~~--~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~-  155 (667)
                        ..|.  .++++ +.|...++|+||+|||||||||++||+|.++                        ++..+++..+ 
T Consensus       132 ~~~~w~l~~i~~~-~a~~~~~tG~gV~VaViDtGvd~~Hpdl~~~------------------------~~~~~~~~~~~  186 (671)
T d1r6va_         132 SNELWGLEAIGVT-QQLWEEASGTNIIVAVVDTGVDGTHPDLEGQ------------------------VIAGYRPAFDE  186 (671)
T ss_dssp             GGGCHHHHHTTCC-HHHHHHCSCTTCEEEEEESCCBTTSGGGTTT------------------------BCCEEEGGGTE
T ss_pred             cccCcChhhcCcc-HHHHhcCCCCCCEEEEEcCCcCCCChhhcCC------------------------cccCccccccC
Confidence              0122  24555 4443456999999999999999999999742                        1222222211 


Q ss_pred             -CCCCCCCCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------------chhHHHHHHHHH
Q 038474          156 -DDGNGSAIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------------GEKILAAFDDAI  219 (667)
Q Consensus       156 -~~~~~~~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------------~~~i~~a~~~a~  219 (667)
                       .....++.|..||||||||||+|....    .|     +.||||+|+|+.+|               ...++++|+||+
T Consensus       187 ~~~~~~~~~d~~gHGT~VAGiiaa~~~~----~g-----~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~  257 (671)
T d1r6va_         187 ELPAGTDSSYGGSAGTHVAGTIAAKKDG----KG-----IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWAT  257 (671)
T ss_dssp             EECTTCBCCTTCSHHHHHHHHHHCCCSS----SS-----CCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHH
T ss_pred             CCCCCCcCcccCCCCccccceeeeeccc----cc-----eeeecCcceEEEEEecccccccCCCCcccHHHHHHHHHHHH
Confidence             112345667889999999999997421    12     38999999999999               245899999999


Q ss_pred             HCCCcEEEeCcCCCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCC-CCcCCCCCceEEEcccc
Q 038474          220 ADGVDIITISLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKA-GFTSSIAPWLMSVAAST  285 (667)
Q Consensus       220 ~~g~dVin~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~  285 (667)
                      ++|++|||||||+.    .....+..++..|.++|+++|+||||+|... ..+++..|++|+|||++
T Consensus       258 ~~g~~Vin~S~g~~----~~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~  320 (671)
T d1r6va_         258 DHGAKVMNHSWGGW----GYSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALD  320 (671)
T ss_dssp             HTTCSEEEECEEBS----CCCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEE
T ss_pred             hCCCcEEecccccc----cCChHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCceEEEEEec
Confidence            99999999999986    2345677788889999999999999998754 46788899999999865

>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermostable serine protease
species: Bacillus sp., AK.1 [TaxId: 1409]

Probab=100.00  E-value=2.2e-41  Score=350.02  Aligned_cols=164  Identities=24%  Similarity=0.246  Sum_probs=127.4

Q ss_pred             CccccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCC
Q 038474           82 SWDFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGS  161 (667)
Q Consensus        82 s~~~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~  161 (667)
                      ..+.++++ .+|+++++|+||+|||||||||++||+|.+                        +++..++|...   ...
T Consensus        14 ~l~~i~~~-~aw~~~~~G~gv~VaviDsGi~~~h~~l~~------------------------~~~~~~~~~~~---~~~   65 (280)
T d1dbia_          14 GPQNTYTD-YAWDVTKGSSGQEIAVIDTGVDYTHPDLDG------------------------KVIKGYDFVDN---DYD   65 (280)
T ss_dssp             TTGGGTHH-HHTTTCCCCTTCEEEEEESCCCTTSTTTTT------------------------TEEEEEETTTT---BSC
T ss_pred             ChhhCCHH-HHHhccCCCCCeEEEEEccCcCCCChhhcC------------------------CeeecccccCC---CCc
Confidence            34557777 999999999999999999999999999973                        34455555432   245


Q ss_pred             CCCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCC
Q 038474          162 AIDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGD  232 (667)
Q Consensus       162 ~~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~  232 (667)
                      +.|..+|||||||+|+|...+.        +.+.||||+|+|+.+|         ..++++|+++++++|++|||+|||.
T Consensus        66 ~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~iin~S~g~  137 (280)
T d1dbia_          66 PMDLNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGC  137 (280)
T ss_dssp             CCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred             cccccccccceeEeeeccccCC--------CceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHHHHcCCcEeeccccc
Confidence            6788999999999999875321        2348999999999999         5679999999999999999999998


Q ss_pred             CCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEcccc
Q 038474          233 TSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAAST  285 (667)
Q Consensus       233 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~  285 (667)
                      ..    ..+....+...+.++|+++|+||||+|......++..|++|+|||.+
T Consensus       138 ~~----~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~  186 (280)
T d1dbia_         138 DC----HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD  186 (280)
T ss_dssp             CC----CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEEC
T ss_pred             cc----cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeec
Confidence            72    23455667778889999999999999987778888899999998854

>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermitase
species: Thermoactinomyces vulgaris [TaxId: 2026]

Probab=100.00  E-value=2.9e-40  Score=341.10  Aligned_cols=236  Identities=26%  Similarity=0.353  Sum_probs=191.9

Q ss_pred             cccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCC
Q 038474           84 DFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAI  163 (667)
Q Consensus        84 ~~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~  163 (667)
                      +.|+++ ++|+.+ +|+||+|+|||||||++||+|.+                        +++..++|..+   ...+.
T Consensus        16 ~~i~a~-~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~------------------------~~~~~~~~~~~---~~~~~   66 (279)
T d1thma_          16 QKIQAP-QAWDIA-EGSGAKIAIVDTGVQSNHPDLAG------------------------KVVGGWDFVDN---DSTPQ   66 (279)
T ss_dssp             HHTTHH-HHHTTC-CCTTCEEEEEESCCCTTCTTTTT------------------------TEEEEEETTTT---BSCCC
T ss_pred             hhCCHH-HHHhcc-CCCCcEEEEEcCCCCCCChhhcC------------------------Ceecccccccc---Ccccc
Confidence            457777 999988 99999999999999999999973                        34555666432   34567


Q ss_pred             CCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCC
Q 038474          164 DEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTS  234 (667)
Q Consensus       164 D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~  234 (667)
                      |..+|||||||+|++...++        ..+.|+||+|+|+.+|         ..+++++|+++++.+++++|+|||...
T Consensus        67 d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~i~n~S~G~~~  138 (279)
T d1thma_          67 NGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTV  138 (279)
T ss_dssp             CSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS
T ss_pred             cccccccccceeeeeccCCC--------ccccccCCcceEEEEEEEecCCCCcHHHHHHHHHHHhhcCCceeccccCccc
Confidence            88999999999999986332        2238999999999999         667899999999999999999999872


Q ss_pred             CCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEccccCCcceeeeEEeCCCeEEEEEEeeeccCCC
Q 038474          235 AVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINAFTHK  314 (667)
Q Consensus       235 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~s~~~~~~~  314 (667)
                          .......+...+.++|+++|+|+||+|......+...|++|+|||++.+                           
T Consensus       139 ----~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~~---------------------------  187 (279)
T d1thma_         139 ----GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN---------------------------  187 (279)
T ss_dssp             ----CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT---------------------------
T ss_pred             ----cchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccCC---------------------------
Confidence                3345566777888999999999999998888888889999999885421                           


Q ss_pred             CceeeEEEccCCCCCCCCCccccccccccEEEEeechhhHHHHhcCceEEEEecCCCCCcccccccceEEeChhhHHHHH
Q 038474          315 GKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKFNSII  394 (667)
Q Consensus       315 ~~~~~lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~iP~~~i~~~~g~~l~  394 (667)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (279)
T d1thma_         188 --------------------------------------------------------------------------------  187 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhhhchhhhhcccCCCCceEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceeeCCccEEeeeCCCCCCCCCcCC
Q 038474          395 HQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISRDIED  474 (667)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~a~FSSrGPt~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~  474 (667)
                                                        +.++.||++||+.        ||.|||.+|+++.+.+         
T Consensus       188 ----------------------------------~~~~~~S~~G~~~--------di~Apg~~i~~~~~~~---------  216 (279)
T d1thma_         188 ----------------------------------DNKSSFSTYGSWV--------DVAAPGSSIYSTYPTS---------  216 (279)
T ss_dssp             ----------------------------------SCBCTTCCCCTTC--------CEEEECSSEEEEETTT---------
T ss_pred             ----------------------------------CCCccccCCCceE--------EEeeeeeccccccCcc---------
Confidence                                              3567899999976        9999999999998774         


Q ss_pred             ccceeeEEEcccCCchhhhhc--C---------------CCcCCCC-CCCcCcccccccCccCCCC
Q 038474          475 ERHVKYNIISGTSMACPHAAA--W---------------PMNSSKN-TQAEFAYGSGHINPVKATN  522 (667)
Q Consensus       475 ~~~~~y~~~SGTSMAaPhVAa--~---------------~i~~~~~-~~~~~~~GaG~in~~~A~~  522 (667)
                          .|..++||||||||||+  .               ++.++.. +.....||+|+||+.+|++
T Consensus       217 ----~~~~~sGTS~AaP~vaG~~ALl~~~~~s~~~i~~~L~~tA~~~~g~~~~~G~G~vn~~~Av~  278 (279)
T d1thma_         217 ----TYASLSGTSMATPHVAGVAGLLASQGRSASNIRAAIENTADKISGTGTYWAKGRVNAYKAVQ  278 (279)
T ss_dssp             ----EEEEECSHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTCBCCTTBTTTBSSEECCHHHHHH
T ss_pred             ----cccccCCcchhhHHHHHHHHHHhcCCcCHHHHHHHHHhhCccCCCCCCcceeeeEcHHHhhC
Confidence                69999999999999992  1               1122222 3466779999999999863

>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease Apa1
species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]

Probab=100.00  E-value=3.7e-40  Score=361.51  Aligned_cols=165  Identities=21%  Similarity=0.290  Sum_probs=131.7

Q ss_pred             cccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCC
Q 038474           84 DFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAI  163 (667)
Q Consensus        84 ~~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~  163 (667)
                      .+++.+ .+|+  .+|+||+|||||||||++||+|.++                        ++..+++..+ .+...+.
T Consensus         9 ~~i~a~-~~~~--~~G~gv~VaviDtGid~~Hp~~~~~------------------------~~~~~~~~~~-~~~~~~~   60 (435)
T d1v6ca_           9 TFVGAT-VLSD--SQAGNRTICIIDSGYDRSHNDLNAN------------------------NVTGTNNSGT-GNWYQPG   60 (435)
T ss_dssp             HHTTGG-GSCC--TTGGGCEEEEEESCCCTTSTTTTTS------------------------EEEECCCTTS-CCTTCCC
T ss_pred             hhcCcc-hhhh--cCCCCcEEEEEcCCCCCCChhhccC------------------------eeeeeccCCC-CCCCCCC
Confidence            356666 6776  4799999999999999999999742                        3333333321 2245678


Q ss_pred             CCCCCcchhhhhhccccCCCCccccccccceeeccc--CcEEEEEe---------chhHHHHHHHHHH-CCCcEEEeCcC
Q 038474          164 DEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVP--SARISAYR---------GEKILAAFDDAIA-DGVDIITISLG  231 (667)
Q Consensus       164 D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP--~A~l~~~k---------~~~i~~a~~~a~~-~g~dVin~SlG  231 (667)
                      |++||||||||||||...+    .|     +.||||  +++|+.+|         ..++++||+++++ .|++|||+|||
T Consensus        61 d~~gHGThvAgiiag~~~~----~g-----~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S~g  131 (435)
T d1v6ca_          61 NNNAHGTHVAGTIAAIANN----EG-----VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLG  131 (435)
T ss_dssp             SSCCHHHHHHHHHHCCCSS----SB-----CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCC
T ss_pred             CCCCcHHHHHHHHhccCCC----Cc-----eEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEecccC
Confidence            8999999999999997521    12     389999  89999998         5679999999986 59999999999


Q ss_pred             CCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEccccCCcc
Q 038474          232 DTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAASTTDRL  289 (667)
Q Consensus       232 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~d~~  289 (667)
                      ...    ....+..++..+.++|+++|+||||+|+...++++.++++|+|||++.+..
T Consensus       132 ~~~----~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~  185 (435)
T d1v6ca_         132 GSG----STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLD  185 (435)
T ss_dssp             BSC----CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCC
T ss_pred             CCC----CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCC
Confidence            872    234566777888899999999999999988889999999999999887643

>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus subtilis, carlsberg [TaxId: 1423]

Probab=100.00  E-value=1.7e-39  Score=334.31  Aligned_cols=234  Identities=27%  Similarity=0.428  Sum_probs=185.2

Q ss_pred             cccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCC
Q 038474           84 DFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAI  163 (667)
Q Consensus        84 ~~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~  163 (667)
                      ++++++ .+|+++++|+||+|||||||||++||+|+                          +...++|..+   ...+.
T Consensus         9 ~~i~~~-~~~~~g~tG~gv~VaViDtGv~~~Hp~l~--------------------------~~~~~~~~~~---~~~~~   58 (274)
T d1r0re_           9 PLIKAD-KVQAQGFKGANVKVAVLDTGIQASHPDLN--------------------------VVGGASFVAG---EAYNT   58 (274)
T ss_dssp             HHTTHH-HHHHHTCSCTTCEEEEEESCCCTTCTTCC--------------------------EEEEEECSTT---CCTTC
T ss_pred             hhcChH-HHHHcCCCCCCeEEEEECCCCCCCChhhc--------------------------ccCCccccCC---CCCCC
Confidence            567888 99999999999999999999999999995                          2334445322   23456


Q ss_pred             CCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCC
Q 038474          164 DEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTS  234 (667)
Q Consensus       164 D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~  234 (667)
                      |..+|||||||||++....    .+     ..|+||+|+|+.++         .++++++++++.+++++|+|+|||...
T Consensus        59 d~~gHGT~vAgii~~~~~~----~~-----~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~~~~i~n~S~~~~~  129 (274)
T d1r0re_          59 DGNGHGTHVAGTVAALDNT----TG-----VLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS  129 (274)
T ss_dssp             CSSSHHHHHHHHHHCCSSS----SB-----CCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSS
T ss_pred             Ccccccccccccccccccc----cc-----ccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCceecccccccc
Confidence            7889999999999987521    12     37999999999999         467899999999999999999999872


Q ss_pred             CCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCC----CcCCCCCceEEEccccCCcceeeeEEeCCCeEEEEEEeeec
Q 038474          235 AVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAG----FTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINA  310 (667)
Q Consensus       235 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~----~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~s~~~  310 (667)
                          ..........++.++++++|+||||+|....    .++...+++|+|||.+.+                       
T Consensus       130 ----~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~-----------------------  182 (274)
T d1r0re_         130 ----GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN-----------------------  182 (274)
T ss_dssp             ----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT-----------------------
T ss_pred             ----chhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECCC-----------------------
Confidence                2234455667888999999999999986532    445677899999885421                       


Q ss_pred             cCCCCceeeEEEccCCCCCCCCCccccccccccEEEEeechhhHHHHhcCceEEEEecCCCCCcccccccceEEeChhhH
Q 038474          311 FTHKGKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKF  390 (667)
Q Consensus       311 ~~~~~~~~~lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~iP~~~i~~~~g  390 (667)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (274)
T d1r0re_         183 --------------------------------------------------------------------------------  182 (274)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhhchhhhhcccCCCCceEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceeeCCccEEeeeCCCCCCCC
Q 038474          391 NSIIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISR  470 (667)
Q Consensus       391 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~a~FSSrGPt~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~  470 (667)
                                                            +.++.||++||        ||||+|||.+|+++.+.+     
T Consensus       183 --------------------------------------~~~~~~s~~g~--------~~di~APG~~i~~~~~~~-----  211 (274)
T d1r0re_         183 --------------------------------------SNRASFSSVGA--------ELEVMAPGAGVYSTYPTN-----  211 (274)
T ss_dssp             --------------------------------------SCBCTTCCCST--------TEEEEEECSSEEEEETTT-----
T ss_pred             --------------------------------------CCcccccCCCC--------CEEEEecCCCcccccCCC-----
Confidence                                                  34578999997        459999999999998764     


Q ss_pred             CcCCccceeeEEEcccCCchhhhhc--------C-----------CCcCCCCCCCcCcccccccCccCCCC
Q 038474          471 DIEDERHVKYNIISGTSMACPHAAA--------W-----------PMNSSKNTQAEFAYGSGHINPVKATN  522 (667)
Q Consensus       471 ~~~~~~~~~y~~~SGTSMAaPhVAa--------~-----------~i~~~~~~~~~~~~GaG~in~~~A~~  522 (667)
                              .|..++|||||||+||+        .           ++.++......+.||+|+||+.+|++
T Consensus       212 --------~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~~~~~G~G~ln~~~A~~  274 (274)
T d1r0re_         212 --------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSFYYGKGLINVEAAAQ  274 (274)
T ss_dssp             --------EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCSCHHHHTTCBCCHHHHTC
T ss_pred             --------CeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCceEcCeecHHHhcC
Confidence                    68999999999999992        1           11222334567789999999999975

>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]

Probab=100.00  E-value=1.1e-38  Score=329.57  Aligned_cols=236  Identities=29%  Similarity=0.367  Sum_probs=184.5

Q ss_pred             cccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCC
Q 038474           84 DFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAI  163 (667)
Q Consensus        84 ~~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~  163 (667)
                      +.|+++ .+|+++++|+||+|||||||||++||+|+.                          ...+++..+  +.....
T Consensus         9 ~~i~a~-~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~--------------------------~~~~~~~~~--~~~~~~   59 (281)
T d1to2e_           9 SQIKAP-ALHSQGYTGSNVKVAVIDSGIDSSHPDLKV--------------------------AGGASMVPS--ETNPFQ   59 (281)
T ss_dssp             HHTTHH-HHHHHTCSCTTCEEEEEESCCCTTCTTCCE--------------------------EEEEECCTT--CCCTTC
T ss_pred             HHhCcH-HHHHCCCCCCCeEEEEECCCCCCCChhhhh--------------------------cCCccccCC--CCCCCc
Confidence            457777 999999999999999999999999999962                          122233211  112223


Q ss_pred             CCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCC
Q 038474          164 DEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTS  234 (667)
Q Consensus       164 D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~  234 (667)
                      +..+|||||||||+|....         ....|+||+|+|+.+|         ..+++++++|+++.+++|+|+|||.. 
T Consensus        60 ~~~~HGT~vAgiiag~~~~---------~~~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~~~~v~n~S~g~~-  129 (281)
T d1to2e_          60 DNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGP-  129 (281)
T ss_dssp             CSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBS-
T ss_pred             CcCCCCceeecccccCCCC---------CCcceeecccEEEEEEEeCCCCCcCHHHHHHHHHHHHhccccccccccCCC-
Confidence            4679999999999987421         1137999999999999         45689999999999999999999986 


Q ss_pred             CCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCC----CCcCCCCCceEEEccccCCcceeeeEEeCCCeEEEEEEeeec
Q 038474          235 AVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKA----GFTSSIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSINA  310 (667)
Q Consensus       235 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~~~~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~s~~~  310 (667)
                         .....+..++..+.++|+++|+||||+|...    ...++..+++|+|||.+.+                       
T Consensus       130 ---~~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~-----------------------  183 (281)
T d1to2e_         130 ---SGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS-----------------------  183 (281)
T ss_dssp             ---CCCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT-----------------------
T ss_pred             ---cchHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecCC-----------------------
Confidence               2345677788888999999999999998653    2356677899999885421                       


Q ss_pred             cCCCCceeeEEEccCCCCCCCCCccccccccccEEEEeechhhHHHHhcCceEEEEecCCCCCcccccccceEEeChhhH
Q 038474          311 FTHKGKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDKF  390 (667)
Q Consensus       311 ~~~~~~~~~lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~iP~~~i~~~~g  390 (667)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (281)
T d1to2e_         184 --------------------------------------------------------------------------------  183 (281)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhhchhhhhcccCCCCceEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceeeCCccEEeeeCCCCCCCC
Q 038474          391 NSIIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPISR  470 (667)
Q Consensus       391 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~a~FSSrGPt~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~  470 (667)
                                                            +.++.||++||..        |+.|||.+|+++.+.+     
T Consensus       184 --------------------------------------~~~~~~S~~G~~~--------d~~apG~~i~s~~~~~-----  212 (281)
T d1to2e_         184 --------------------------------------NQRASFSSVGPEL--------DVMAPGVSIQSTLPGN-----  212 (281)
T ss_dssp             --------------------------------------SCBCTTCCCSTTC--------CEEEECSSEEEEETTT-----
T ss_pred             --------------------------------------CCCCcccCCCCCc--------cccCCCCCceeecCCC-----
Confidence                                                  3457899999876        9999999999998764     


Q ss_pred             CcCCccceeeEEEcccCCchhhhhc-------------------CCCcCCCCCCCcCcccccccCccCCCCC
Q 038474          471 DIEDERHVKYNIISGTSMACPHAAA-------------------WPMNSSKNTQAEFAYGSGHINPVKATNP  523 (667)
Q Consensus       471 ~~~~~~~~~y~~~SGTSMAaPhVAa-------------------~~i~~~~~~~~~~~~GaG~in~~~A~~p  523 (667)
                              .|..++|||||||+||+                   .++.++........||+|+||+.+|++.
T Consensus       213 --------~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~~~~~G~G~ld~~~A~~~  276 (281)
T d1to2e_         213 --------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFYYGKGLINVQAAAQH  276 (281)
T ss_dssp             --------EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCSCHHHHTTCBCCHHHHTSS
T ss_pred             --------eeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCcccCcccHHHHHhh
Confidence                    68999999999999992                   1122222234567799999999999884

>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus lentus [TaxId: 1467]

Probab=100.00  E-value=1.2e-38  Score=327.23  Aligned_cols=158  Identities=25%  Similarity=0.279  Sum_probs=128.5

Q ss_pred             cccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCC
Q 038474           84 DFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAI  163 (667)
Q Consensus        84 ~~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~  163 (667)
                      +.|+++ .+|+.+++|+||+||||||||+ +||+|..                          ...++|...   ...+.
T Consensus         9 ~~i~~~-~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~--------------------------~~~~~~~~~---~~~~~   57 (269)
T d1gcia_           9 SRVQAP-AAHNRGLTGSGVKVAVLDTGIS-THPDLNI--------------------------RGGASFVPG---EPSTQ   57 (269)
T ss_dssp             HHTTHH-HHHHTTCSCTTCEEEEEESCCC-CCTTCCE--------------------------EEEEECSTT---CCSCS
T ss_pred             hHhCcH-HHHhCCCCCCCeEEEEECCCCC-CCcccCc--------------------------cccccccCC---CCCcc
Confidence            457777 9999999999999999999998 8999952                          123334321   24566


Q ss_pred             CCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCCCcEEEeCcCCCC
Q 038474          164 DEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADGVDIITISLGDTS  234 (667)
Q Consensus       164 D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g~dVin~SlG~~~  234 (667)
                      |..+|||||||+|++....         +...|+||+|+|+.+|         ..++.++++++...++++||+|||...
T Consensus        58 d~~~HGT~vAgii~~~~~~---------~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~in~s~g~~~  128 (269)
T d1gcia_          58 DGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS  128 (269)
T ss_dssp             CSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSS
T ss_pred             ccchhhheecccccccCCC---------ccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhcccccccccccccc
Confidence            7899999999999987522         2237999999999999         446899999999999999999999872


Q ss_pred             CCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcCCCCCceEEEcccc
Q 038474          235 AVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTSSIAPWLMSVAAST  285 (667)
Q Consensus       235 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~  285 (667)
                          .......+...+.++|++||+||||+|.....+|+..|++|+|||++
T Consensus       129 ----~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~  175 (269)
T d1gcia_         129 ----PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATD  175 (269)
T ss_dssp             ----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC
T ss_pred             ----ccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEc
Confidence                22344566778889999999999999988888888999999998854

>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Proteinase K
species: Fungus (Tritirachium album), strain limber [TaxId: 37998]

Probab=100.00  E-value=4.9e-35  Score=301.77  Aligned_cols=142  Identities=25%  Similarity=0.323  Sum_probs=112.3

Q ss_pred             cCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhh
Q 038474           95 RRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTAS  174 (667)
Q Consensus        95 ~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAg  174 (667)
                      ...+|+||+|||||||||++||+|.+.                        +...+.+      ...+.|.+||||||||
T Consensus        26 ~~~tG~Gv~VaViDsGid~~Hpdf~g~------------------------~~~~~~~------~~~~~d~~gHGT~VAg   75 (279)
T d2pwaa1          26 DESAGQGSCVYVIDTGIEASHPEFEGR------------------------AQMVKTY------YYSSRDGNGHGTHCAG   75 (279)
T ss_dssp             CTTTTTTEEEEEEESCCCTTCGGGTTC------------------------EEEEEES------SSCSSCSSSHHHHHHH
T ss_pred             cCCCCCCeEEEEECcCCCCCChhhcCC------------------------ceeccCC------CCCcccccCccccccc
Confidence            345899999999999999999999742                        1222222      1245678999999999


Q ss_pred             hhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCC-------CcEEEeCcCCCCCCCC
Q 038474          175 TAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADG-------VDIITISLGDTSAVDL  238 (667)
Q Consensus       175 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g-------~dVin~SlG~~~~~~~  238 (667)
                      ||+|..              .|+||+|+|+.+|         ..++..+++++....       ++|+|+|||..     
T Consensus        76 iia~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n~s~g~~-----  136 (279)
T d2pwaa1          76 TVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG-----  136 (279)
T ss_dssp             HHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE-----
T ss_pred             cccccc--------------cccCCCccccceeeecCCcccccccccchhheecccccccccccccceeccCCCc-----
Confidence            999864              6999999999999         456788888887643       45999999976     


Q ss_pred             hhhHHHHHHHHhhcCCeEEEEecCCCCCCCC-CcCCCCCceEEEcccc
Q 038474          239 AHDVIAIGAFHAMTKGILTVNSAGNNGPKAG-FTSSIAPWLMSVAAST  285 (667)
Q Consensus       239 ~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~  285 (667)
                      ..+.+..++.++.++|+++|+||||++.... ..+...|++|+|||++
T Consensus       137 ~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~  184 (279)
T d2pwaa1         137 YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASD  184 (279)
T ss_dssp             CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEEC
T ss_pred             cccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEe
Confidence            3456777888889999999999999987543 3567789999998854

>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease kp-43, N-terminal domain
species: Bacillus sp. KSM-KP43 [TaxId: 109322]

Probab=100.00  E-value=7.4e-34  Score=297.35  Aligned_cols=271  Identities=27%  Similarity=0.304  Sum_probs=193.3

Q ss_pred             cccCCChhhhcc-CCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCC
Q 038474           84 DFMGFNESITQR-RTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSA  162 (667)
Q Consensus        84 ~~ig~~~~~w~~-~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~  162 (667)
                      ++++++ .+|.. |++|+||+|||||||||++||+|....                  ....++...+.+..    ..++
T Consensus         6 ~~~~~~-~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------------------~~~~~~~~~~~~~~----~~~~   62 (318)
T d1wmda2           6 GIVKAD-VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------------------AFRGKITALYALGR----TNNA   62 (318)
T ss_dssp             HHTTHH-HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------------------TTTTCEEEEEETTT----TTCC
T ss_pred             cccCch-hHHHccCccccCeEEEEEcCCcCCCCcccccCc------------------ccCCcEEeecCCCC----CCCC
Confidence            467778 88886 999999999999999999999997420                  01234444444432    2456


Q ss_pred             CCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe-----------chhHHHHHHHHHHCCCcEEEeCcC
Q 038474          163 IDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-----------GEKILAAFDDAIADGVDIITISLG  231 (667)
Q Consensus       163 ~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-----------~~~i~~a~~~a~~~g~dVin~SlG  231 (667)
                      .|..||||||||||+|+...           ..||||+|+|+.+|           ...+..+++++...+++|+|+|||
T Consensus        63 ~d~~gHGT~vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~g  131 (318)
T d1wmda2          63 NDTNGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWG  131 (318)
T ss_dssp             CCSSSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEECCC
T ss_pred             CCCCCCCccceeeccccccc-----------cchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCceeecccc
Confidence            68899999999999987421           27999999999999           334778899999999999999999


Q ss_pred             CCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCCcC--CCCCceEEEccccCCcceeeeEEeCCCeEEEEEEeee
Q 038474          232 DTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGFTS--SIAPWLMSVAASTTDRLFVDKVVLGNGKTIVVRYSIN  309 (667)
Q Consensus       232 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~--~~~p~vitVgA~~~d~~~~~~~~~~~~~~~~g~~s~~  309 (667)
                      .... .........+...+.++++++|+|+||.|.....+.  ...++++++.+.......                 . 
T Consensus       132 ~~~~-~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~-----------------~-  192 (318)
T d1wmda2         132 AAVN-GAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPS-----------------F-  192 (318)
T ss_dssp             BCCT-TCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGG-----------------G-
T ss_pred             cccc-cccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCcccc-----------------c-
Confidence            8732 233445555666677899999999999997765543  345677777654321100                 0 


Q ss_pred             ccCCCCceeeEEEccCCCCCCCCCccccccccccEEEEeechhhHHHHhcCceEEEEecCCCCCcccccccceEEeChhh
Q 038474          310 AFTHKGKMFPLLYGKGVTNSSSCTEDYANLVKGNIVLCDEFSGYHVAREAGAAGLILKDNRLYNVSLILPFPASTVTPDK  389 (667)
Q Consensus       310 ~~~~~~~~~~lv~~~~~~~~~~C~~~~~~~~~gkIvl~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~iP~~~i~~~~  389 (667)
                                                                                                      
T Consensus       193 --------------------------------------------------------------------------------  192 (318)
T d1wmda2         193 --------------------------------------------------------------------------------  192 (318)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhhhhchhhhhcccCCCCceEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceeeCCccEEeeeCCCCCCC
Q 038474          390 FNSIIHQFYQVIMNFLRSSIILNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPIS  469 (667)
Q Consensus       390 g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~a~FSSrGPt~~~~~~lKPDI~APG~~I~Sa~~~~~~~~  469 (667)
                                  .++..                    ....+..||++||..  ....|||+.|||.+|+++.....+..
T Consensus       193 ------------~~~~~--------------------~~~~~~~~s~~G~~~--~~~~~~~~~a~G~~i~~~~~~~~~~~  238 (318)
T d1wmda2         193 ------------GSYAD--------------------NINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDS  238 (318)
T ss_dssp             ------------CGGGS--------------------CTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTCCGG
T ss_pred             ------------ccccc--------------------cccccccccccCCCc--CCCcccceeecCceEEeccccccccC
Confidence                        00111                    124567899999987  77899999999999999987654322


Q ss_pred             CCcCCccceeeEEEcccCCchhhhhc--CC-----------------Cc-----CCCC---CCCcCcccccccCccCCCC
Q 038474          470 RDIEDERHVKYNIISGTSMACPHAAA--WP-----------------MN-----SSKN---TQAEFAYGSGHINPVKATN  522 (667)
Q Consensus       470 ~~~~~~~~~~y~~~SGTSMAaPhVAa--~~-----------------i~-----~~~~---~~~~~~~GaG~in~~~A~~  522 (667)
                      .. .......|..++||||||||||+  .+                 |+     ++..   +.....||+|+||+.+||+
T Consensus       239 ~~-~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~~~~~~~~G~G~ld~~~Al~  317 (318)
T d1wmda2         239 SF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGYPNGNQGWGRVTLDKSLN  317 (318)
T ss_dssp             GS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSSCSSCTTTTTCBCCHHHHHT
T ss_pred             cc-ccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCCCCCCCCeeeceecHHHHhC
Confidence            11 11223568899999999999992  00                 11     1111   3456779999999999976

>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Sphericase
species: Bacillus sphaericus [TaxId: 1421]

Probab=100.00  E-value=1.1e-33  Score=295.14  Aligned_cols=166  Identities=28%  Similarity=0.366  Sum_probs=125.8

Q ss_pred             cccCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCC-CCCCCCC
Q 038474           84 DFMGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFR-DDGNGSA  162 (667)
Q Consensus        84 ~~ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~-~~~~~~~  162 (667)
                      +.++++ .+|..+++|+||+|||||||||++||+|.+                        ++...++|.+. .......
T Consensus        11 ~~i~~~-~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~------------------------~~~~~~~~~~~~~~~~~~~   65 (309)
T d2ixta1          11 KAIYNN-DTLTSTTGGSGINIAVLDTGVNTSHPDLVN------------------------NVEQCKDFTGATTPINNSC   65 (309)
T ss_dssp             HHHHTC-TTCCCCCCCTTCEEEEEESCCCTTCTTTTT------------------------TEEEEEESSSSSSCEETCC
T ss_pred             hhcCCh-hhhccCCCCCCeEEEEEccCCCCCChhHhc------------------------cccccccccCCCCCCCCCc
Confidence            346677 899999999999999999999999999973                        24455556543 2223455


Q ss_pred             CCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHHCC-----CcEEEe
Q 038474          163 IDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIADG-----VDIITI  228 (667)
Q Consensus       163 ~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~~g-----~dVin~  228 (667)
                      .|..||||||||||+|....+       ...+.||||+|+|+.++         ..+++.+++++++.+     ..++|+
T Consensus        66 ~d~~gHGT~VAgiiaa~~~~~-------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~  138 (309)
T d2ixta1          66 TDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISM  138 (309)
T ss_dssp             CCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             ccccccccccccccccccccc-------chhhhhhhhhccceeeeeecCCCCcccccccccccccccccccccccccccc
Confidence            678899999999999875321       12238999999999999         446788888887643     468999


Q ss_pred             CcCCCCCCCChhhHHHHHHHHhhcCCeEEEEecCCCCCCCCC--cCCCCCceEEEcccc
Q 038474          229 SLGDTSAVDLAHDVIAIGAFHAMTKGILTVNSAGNNGPKAGF--TSSIAPWLMSVAAST  285 (667)
Q Consensus       229 SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~~p~vitVgA~~  285 (667)
                      |++..    .....+..++..+.++|+++|+||||++.....  +++..+++++|++.+
T Consensus       139 s~~~~----~~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~  193 (309)
T d2ixta1         139 SLGSS----ANNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALE  193 (309)
T ss_dssp             CCCBS----SCCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEE
T ss_pred             ccccc----ccccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccc
Confidence            99886    223455566778889999999999999876543  455678888888754

>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Kexin, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.6e-30  Score=270.87  Aligned_cols=151  Identities=18%  Similarity=0.196  Sum_probs=105.4

Q ss_pred             cCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCC
Q 038474           86 MGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDE  165 (667)
Q Consensus        86 ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~  165 (667)
                      |++. .+|+.+++|+||+|||||||||++||+|.++-..                      .+.++|.++........++
T Consensus        33 in~~-~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~~----------------------~~~~~~~~~~~~~~~~~~~   89 (339)
T d2id4a2          33 INVL-DLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCA----------------------EGSWDFNDNTNLPKPRLSD   89 (339)
T ss_dssp             CCCH-HHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBCG----------------------GGCEETTTTBSCCCCCSTT
T ss_pred             cCHH-HHHhcCCCCCCcEEEEECcCcCCCChHHhcCccc----------------------ccccccccCCCccCCCccc
Confidence            6777 9999999999999999999999999999853110                      1123343322223345567


Q ss_pred             CCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe-------chhHHHHHHHHHHCCCcEEEeCcCCCCCCCC
Q 038474          166 EGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-------GEKILAAFDDAIADGVDIITISLGDTSAVDL  238 (667)
Q Consensus       166 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-------~~~i~~a~~~a~~~g~dVin~SlG~~~~~~~  238 (667)
                      .+|||||||+|+|....+.        ...||||+|+|+.++       ..++..++.++++. .+|+|+|||.......
T Consensus        90 ~~HGT~vag~iaa~~~~~~--------~~~Gvap~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~s~g~~~~~~~  160 (339)
T d2id4a2          90 DYHGTRCAGEIAAKKGNNF--------CGVGVGYNAKISGIRILSGDITTEDEAASLIYGLDV-NDIYSCSWGPADDGRH  160 (339)
T ss_dssp             TTHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECTTSCCCHHHHHHHTTTTTTT-CSEEEECEESCCSSSC
T ss_pred             ccccceeeecccccccccc--------cccccccccccceEEEeeccccchHHHHHHHHHHhh-CCEEeccCCCCCCccc
Confidence            8999999999998753322        137999999999999       44456666666554 5899999987521111


Q ss_pred             -------hhhHH-HHHHHHhhcCCeEEEEecCCCCCCC
Q 038474          239 -------AHDVI-AIGAFHAMTKGILTVNSAGNNGPKA  268 (667)
Q Consensus       239 -------~~~~~-~~a~~~a~~~Gi~vV~AAGN~G~~~  268 (667)
                             ....+ ..+...+..+|+++|+||||++...
T Consensus       161 ~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~  198 (339)
T d2id4a2         161 LQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRG  198 (339)
T ss_dssp             CBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGT
T ss_pred             ccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCC
Confidence                   11222 2334455579999999999987543

>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Furin, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3e-29  Score=263.64  Aligned_cols=152  Identities=16%  Similarity=0.165  Sum_probs=106.8

Q ss_pred             cCCChhhhccCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccC---CCCCCCCC
Q 038474           86 MGFNESITQRRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSF---RDDGNGSA  162 (667)
Q Consensus        86 ig~~~~~w~~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~---~~~~~~~~  162 (667)
                      |+++ .+|+.+++|+||+|||||||||++||+|.++-.            .+..|          .+..   ........
T Consensus        24 in~~-~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~~------------~~~~~----------~~~~~~~~~~~~~~~   80 (334)
T d1p8ja2          24 LNVK-EAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD------------PGASF----------DVNDQDPDPQPRYTQ   80 (334)
T ss_dssp             CCCH-HHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC------------GGGCE----------ETTTTBSCCCCCCCT
T ss_pred             CCHH-HHHhcCCCCCCeEEEEEccCCCCCChhHhhccc------------cCCCc----------cccCCCCcccccccc
Confidence            5667 899999999999999999999999999974210            00011          1111   01122345


Q ss_pred             CCCCCCcchhhhhhccccCCCCccccccccceeecccCcEEEEEe-----chhHHHHHHHHHH-CCCcEEEeCcCCCCCC
Q 038474          163 IDEEGHGSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR-----GEKILAAFDDAIA-DGVDIITISLGDTSAV  236 (667)
Q Consensus       163 ~D~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k-----~~~i~~a~~~a~~-~g~dVin~SlG~~~~~  236 (667)
                      .|..+|||||||||+|...++..        ..|+||+++++.++     ..+.+.++.++++ .+++++|+|||.....
T Consensus        81 ~~~~gHGT~vAgiia~~~~n~~~--------~~g~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~S~g~~~~~  152 (334)
T d1p8ja2          81 MNDNRHGTRCAGEVAAVANNGVC--------GVGVAYNARIGGVRMLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDG  152 (334)
T ss_dssp             TCTTCHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECSSSCCCHHHHHHHHTSCTTTCCEEEECCBSCCSS
T ss_pred             ccCccchhhhhhhhhhccccccc--------cccccccccccchhhccccccchHHHHHHHhhhcCCcEEeCCCCCCCcC
Confidence            57899999999999998643221        27999999999999     5556777777765 6899999999975221


Q ss_pred             CCh--------hhHHHHHHHHhhcCCeEEEEecCCCCCCC
Q 038474          237 DLA--------HDVIAIGAFHAMTKGILTVNSAGNNGPKA  268 (667)
Q Consensus       237 ~~~--------~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~  268 (667)
                      ...        ...+..+...+..+|+++|+||||++...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~  192 (334)
T d1p8ja2         153 KTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREH  192 (334)
T ss_dssp             SCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGT
T ss_pred             cccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccC
Confidence            111        12223334455679999999999987654

>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]

Probab=99.92  E-value=9.4e-27  Score=246.20  Aligned_cols=163  Identities=16%  Similarity=0.235  Sum_probs=109.3

Q ss_pred             hhhc--cCCCCCCcEEEEEcCCCCCCCcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCC
Q 038474           91 SITQ--RRTVESDLIVGVIDTGIWPQSESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGH  168 (667)
Q Consensus        91 ~~w~--~~~~G~gv~VgViDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gH  168 (667)
                      ++|+  .+++|+||+|||||||||++||+|.+.        |+..   +              +   ......+.|.++|
T Consensus        13 ~~y~~~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~~---~--------------~---~~~~~~~~~~~g~   64 (357)
T d1t1ga_          13 QAYQFPEGLDGQGQCIAIIALGGGYDETSLAQY--------FASL---G--------------V---SAPQVVSVSVDGA   64 (357)
T ss_dssp             HHTTCCTTCCCTTCEEEEEESSCCCCHHHHHHH--------HHHT---T--------------C---CCCCEEEEESTTC
T ss_pred             HHHCCCCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhhc---C--------------C---CCCCCceeCCCCC
Confidence            4454  589999999999999999999999731        1110   0              0   0001223456789


Q ss_pred             cchhhhhhccccCCCCccccccccceeecccCcEEEEEe----chhHHHHHHHHHH---CCCcEEEeCcCCCCCCC--Ch
Q 038474          169 GSNTASTAAGNKVKDASFLGIGQGMARGGVPSARISAYR----GEKILAAFDDAIA---DGVDIITISLGDTSAVD--LA  239 (667)
Q Consensus       169 GThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k----~~~i~~a~~~a~~---~g~dVin~SlG~~~~~~--~~  239 (667)
                      +||+++++++......    .....+.||||+|+|+.++    ....+.++++++.   .+++|||+|||......  ..
T Consensus        65 ~~~~~g~~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~~~~~~  140 (357)
T d1t1ga_          65 TNQPTGDPNGPDGEVE----LDIEVAGALAPGAKIAVYFAPNTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPAS  140 (357)
T ss_dssp             CCCCCSCTTSTHHHHH----HHHHHHHHHSTTSEEEEEECCSSHHHHHHHHHHHHHCTTTCCSEEEECCCEEGGGSCHHH
T ss_pred             CCCCCCcccccccccc----CCcccceeecccCeEEEEecccCCCchHHHHHHHHHhhhcCCeEEecccccCcCccccch
Confidence            9999988776532100    0112248999999999999    4446666766654   58999999999752211  12


Q ss_pred             hhHHHHHHHHhhcCCeEEEEecCCCCCCCC--------CcCCCCCceEEEcccc
Q 038474          240 HDVIAIGAFHAMTKGILTVNSAGNNGPKAG--------FTSSIAPWLMSVAAST  285 (667)
Q Consensus       240 ~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--------~~~~~~p~vitVgA~~  285 (667)
                      ...+......+..+|+++|+|+||+|....        ..+...+++++|++..
T Consensus       141 ~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  194 (357)
T d1t1ga_         141 IAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTR  194 (357)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEE
T ss_pred             HHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeec
Confidence            344566667777899999999999985432        2233567888887754

>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Pseudomonas sp., sedolisin [TaxId: 306]

Probab=99.85  E-value=7.8e-24  Score=225.92  Aligned_cols=157  Identities=17%  Similarity=0.130  Sum_probs=108.4

Q ss_pred             CCCCCCcEEEEEcCCCCCC-CcCCCCCCCCCCCCCccccccCCCCccCCceeEeeeeccCCCCCCCCCCCCCCCcchhhh
Q 038474           96 RTVESDLIVGVIDTGIWPQ-SESFSDEGFGPAPKKWKGACDGGKNFTCNNKIIGARYYSFRDDGNGSAIDEEGHGSNTAS  174 (667)
Q Consensus        96 ~~~G~gv~VgViDtGid~~-Hp~f~d~~~~~~~~~~~g~~~~g~~f~~n~kiig~~~~~~~~~~~~~~~D~~gHGThVAg  174 (667)
                      ..+|+||+|||||+|.++. |+||..        -|+. .  +... ++..     .       .....+..+||||+++
T Consensus        21 ~~tG~gvtVaIid~G~~~~~~~Dl~~--------f~~~-~--~~~~-~~~~-----~-------~~~~~~~~~~~~~~~~   76 (369)
T d1ga6a_          21 APTAANTTVGIITIGGVSQTLQDLQQ--------FTSA-N--GLAS-VNTQ-----T-------IQTGSSNGDYSDDQQG   76 (369)
T ss_dssp             SCCEEEEEEEEEEESBCHHHHHHHHH--------HHHH-T--TCCC-CCEE-----E-------EECSCTTSCCCBCHHH
T ss_pred             CCCCCCcEEEEEecCCcccCHHHHHH--------HHHh-c--CCCC-CCCC-----e-------ecCCCCCCCCCCCCCc
Confidence            4589999999999998764 667741        0000 0  0000 0000     0       0122345789999999


Q ss_pred             hhccccCCCCccccccccceeecccCcEEEEEe---------chhHHHHHHHHHH-CCCcEEEeCcCCCCC---CCChhh
Q 038474          175 TAAGNKVKDASFLGIGQGMARGGVPSARISAYR---------GEKILAAFDDAIA-DGVDIITISLGDTSA---VDLAHD  241 (667)
Q Consensus       175 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~k---------~~~i~~a~~~a~~-~g~dVin~SlG~~~~---~~~~~~  241 (667)
                      ++.+...         .....||||+|+|++++         ..+++++|++|++ .+++|||+|||....   .....+
T Consensus        77 ~~e~~ld---------~~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~~~~~~~  147 (369)
T d1ga6a_          77 QGEWDLD---------SQSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQ  147 (369)
T ss_dssp             HHHHHHH---------HHHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHH
T ss_pred             ceeeccc---------cccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeeccccccccCCCcchHHH
Confidence            9887631         12247999999999988         5679999999986 579999999997521   123445


Q ss_pred             HHHHHHHHhhcCCeEEEEecCCCCCCCC-------------CcCCCCCceEEEcccc
Q 038474          242 VIAIGAFHAMTKGILTVNSAGNNGPKAG-------------FTSSIAPWLMSVAAST  285 (667)
Q Consensus       242 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-------------~~~~~~p~vitVgA~~  285 (667)
                      .+..++.+|..+|++||+||||+|....             ..+...+++++|+++.
T Consensus       148 ~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~  204 (369)
T d1ga6a_         148 AEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT  204 (369)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred             HHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence            6677788888999999999999986432             2344668999998865

>d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Protease propeptides/inhibitors
family: Subtilase propeptides/inhibitors
domain: Subtilisin prosegment
species: Bacillus subtilis [TaxId: 1423]

Probab=98.52  E-value=1.4e-07  Score=74.26  Aligned_cols=68  Identities=18%  Similarity=0.204  Sum_probs=52.5

Q ss_pred             CEEEEeCCCCCCCCCchhHHHHHHHHHhcCCCCcccEEEEecceeeEEEEEeCHHHHHHHHcCCCeeEEEcCccccc
Q 038474            1 VYIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYKRSFNGFAAKLTDHEIQKLAGMKGVVSVFPSRTLQL   77 (667)
Q Consensus         1 ~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~v~~~~~~~~   77 (667)
                      .|||.|++... ... ...+..+.+      ..+.++.+.|+ .||||+++|+++++++|+++|+|.+|++|..++.
T Consensus         3 ~YIV~fK~~~~-~~~-~~~~~~~v~------~~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~a   70 (71)
T d1scjb_           3 KYIVGFKQTMS-AMS-SAKKKDVIS------QKGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAHE   70 (71)
T ss_dssp             EEEEEECSSSS-CCS-HHHHHHHHH------TTTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEEE
T ss_pred             cEEEEECCCCC-hHH-HHHHHHHHH------HcCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEEc
Confidence            39999999764 222 223333322      23468999995 7999999999999999999999999999998764

>d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Protease propeptides/inhibitors
family: Subtilase propeptides/inhibitors
domain: Proteinase A inhibitor 1, POIA1
species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]

Probab=98.27  E-value=9.4e-07  Score=69.62  Aligned_cols=64  Identities=22%  Similarity=0.437  Sum_probs=45.8

Q ss_pred             EEEEeCCCCCCCCCchhHHHHHHHHHhcCCCCcccEEEEec-ceeeEEEEEeCHHHHHHHHcCCC--eeEEEcCc
Q 038474            2 YIVYMGSLPEGEYLPSSHHQSILEEVVEGSSAENILVRSYK-RSFNGFAAKLTDHEIQKLAGMKG--VVSVFPSR   73 (667)
Q Consensus         2 yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~-~~~ng~s~~l~~~~~~~L~~~p~--V~~v~~~~   73 (667)
                      |||.|++...     .+..+.....+..   .+.++.+.|. +.|+||+++|+++.+++|+++|+  |.+||+|.
T Consensus         5 YIVvlK~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~   71 (72)
T d1v5ib1           5 FIVIFKNDVS-----EDKIRETKDEVIA---EGGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH   71 (72)
T ss_dssp             EEEEECTTCC-----HHHHHHHHHHHHH---HTCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred             EEEEECCCCC-----HHHHHHHHHHHHh---cCCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence            9999999663     1112222222221   1235667776 78999999999999999999665  99999986

>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Transferrin receptor ectodomain, apical domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.003  Score=58.24  Aligned_cols=72  Identities=15%  Similarity=0.128  Sum_probs=53.8

Q ss_pred             eeEEEccCCCCCCCCCcccc----ccccccEEEEee-----chhhHHHHhcCceEEEEecCCCCCc--------------
Q 038474          318 FPLLYGKGVTNSSSCTEDYA----NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNRLYNV--------------  374 (667)
Q Consensus       318 ~~lv~~~~~~~~~~C~~~~~----~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~--------------  374 (667)
                      -+|||..-      |...++    .+++|||||+++     .+|..+|+++||+|+|+|.+.....              
T Consensus        41 g~lVy~n~------G~~~Df~~L~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~  114 (193)
T d1de4c2          41 GKLVHANF------GTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHL  114 (193)
T ss_dssp             ECEEECST------TCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCS
T ss_pred             EEEEEccC------CCHHHHHHhccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCccccccccccc
Confidence            46777653      333333    579999999997     6899999999999999998644210              


Q ss_pred             ----cc-------------------ccccceEEeChhhHHHHHH
Q 038474          375 ----SL-------------------ILPFPASTVTPDKFNSIIH  395 (667)
Q Consensus       375 ----~~-------------------~~~iP~~~i~~~~g~~l~~  395 (667)
                          +.                   ...||+.-|+..+++.|++
T Consensus       115 ~~GDPlTPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~  158 (193)
T d1de4c2         115 GTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFG  158 (193)
T ss_dssp             SSSCTTSTTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHT
T ss_pred             CCCCCCCCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHH
Confidence                00                   0128999999999999999

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=96.00  E-value=0.038  Score=45.49  Aligned_cols=85  Identities=14%  Similarity=0.053  Sum_probs=58.5

Q ss_pred             CCCCcEEEeecCCCceeEEEEEEEEecCCCCee-EEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeE
Q 038474          570 LNYPSMAAQVSSGESFTIKFPRTVTNIGLPNST-YKARILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIV  648 (667)
Q Consensus       570 lNypsi~~~~~~~~~~~~~~~rtvtNvg~~~~t-Y~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~  648 (667)
                      |.-|++.+.-  +  .+.+++-+|+|.|....+ -++.++.|+|=+++  |....+ ++||+++++++++.+.....+-+
T Consensus         6 ~t~p~~~v~p--G--~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~--~~~~~L-~pG~s~~~~~~Vt~p~~a~~G~Y   78 (103)
T d1w8oa1           6 FTIPDVALEP--G--QQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQ--GSVEPL-MPGRQAKGQVTITVPAGTTPGRY   78 (103)
T ss_dssp             EECCCEEECT--T--CEEEEEEEEECCSSSCBSSCEEEEECCTTSEEE--EEECCB-CTTCEEEEEEEEECCTTCCCEEE
T ss_pred             ccCcceeeCC--C--CeEEEEEEEEeCCCCceeeeeEEEcCCCCcccc--Ccceee-CCCCcEEEEEEEECCCCCCCceE
Confidence            4457776643  2  378999999999987654 46778899997765  555556 89999999999999763333334


Q ss_pred             EEEEEEEcCCeEE
Q 038474          649 SAALVWFDGSHIV  661 (667)
Q Consensus       649 ~G~l~w~~~~h~v  661 (667)
                      .=.++.+++.+..
T Consensus        79 ~i~~~a~~~~~~~   91 (103)
T d1w8oa1          79 RVGATLRTSAGNA   91 (103)
T ss_dssp             EEEEEEEETTEEE
T ss_pred             EEEEEEEeCCcce
Confidence            4445555544433

>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Glutamate carboxypeptidase II
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.023  Score=53.75  Aligned_cols=33  Identities=30%  Similarity=0.300  Sum_probs=29.8

Q ss_pred             ccccccEEEEee-----chhhHHHHhcCceEEEEecCC
Q 038474          338 NLVKGNIVLCDE-----FSGYHVAREAGAAGLILKDNR  370 (667)
Q Consensus       338 ~~~~gkIvl~~~-----~~~~~~~~~~Ga~g~i~~~~~  370 (667)
                      .+++|||||+++     .+|..+|++.||+|+|+|++.
T Consensus        77 i~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysDP  114 (233)
T d3bi1a2          77 INCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDP  114 (233)
T ss_dssp             CCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCH
T ss_pred             CcccceEEEEeCCCCchhHHHHHHHHcCceEEEEecCh
Confidence            478999999986     789999999999999999873