Citrus Sinensis ID: 038485

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MAYSPLVGYKDRKNGEGATDCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWFIILQV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEcccccccEEccccccccccccccccccccccHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccEEEEEcccccEEEEEEcccccccccccccccHHccccccEEEEEccccccccccccccHHHccccccEEEEccccccccccccHHccccccEEEEEccccccccccHHHHccccccEEEEEccccccccccccccccccccccHHccccccccEEEEEEc
Coil and Loop (DISEMBL)
maysplvgykdrkngegatdccqwerveCSNTMSRVIALDlsdtyggeywylnaslftpfqqlesldltdnkIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLegsidvkeldslrdleeldiggnkiDKFVVSkgttntiknanLYKLAGFFAIWFIILQV
Flexible Loop (DISEMBL)
maysplvgykdrkngegatdcCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGsidvkeldslrdleeldiggnkidkfvvsKGTTNTIKNANLYKLAGFFAIWFIILQV
Low Complexity Region (SEG)
MAYSPLVGYKDRKNGEGATDCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFnnsilsslthlsslrslnlFWNRLEGSIDVKeldslrdleeldIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWFIILQV
Disordered region (IsUnstruct)
****************GATDCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWFIIL**
Disordered Region (DISOPRED)
**************GEGATDCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWFIILQV
Disordered Region (DISEMBL)
MAYSPLVGYKDRKNGEGATDCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWFIILQV
Disordered Region (DISPRO)
*****LVGYKDRKNGEGATDCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWFIILQV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAYSPLVGYKDRKNGEGATDCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWFIILQV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.657	0.142	0.363	6e-11
C0LGJ1	1106	Probable LRR receptor-lik	no	no	0.538	0.089	0.379	1e-07
C0LGW6	966	LRR receptor-like serine/	no	no	0.668	0.127	0.315	2e-07
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.733	0.132	0.290	7e-07
Q9FII5	1041	Leucine-rich repeat recep	no	no	0.733	0.129	0.317	9e-07
Q6XAT2	967	LRR receptor-like serine/	no	no	0.581	0.110	0.303	4e-06
O82318	960	Probably inactive leucine	no	no	0.690	0.132	0.318	4e-06
O49545	1003	Leucine-rich repeat recep	no	no	0.706	0.129	0.324	4e-06
C0LGU7	695	Probable LRR receptor-lik	no	no	0.505	0.133	0.383	6e-06
Q42371	976	LRR receptor-like serine/	no	no	0.684	0.129	0.320	2e-05

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 67.4 bits (163), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 73/146 (50%), Gaps = 25/146 (17%)

Query: 18  ATDCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTD----NKI 73
           +TDCC W  V C++   +VI+LD+ +T+   Y   N+SLF   Q L  LDLT+     +I
Sbjct: 68  STDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFK-LQYLRHLDLTNCNLYGEI 126

Query: 74  ASCVEN----------------EGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRS 117
            S + N                E    +  LN L+ L L+ N     I SSL +LS L +
Sbjct: 127 PSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVN 186

Query: 118 LNLFWNRLEGSIDVKELDSLRDLEEL 143
           L LF NRL G I     DS+ DL++L
Sbjct: 187 LELFSNRLVGKIP----DSIGDLKQL 208

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|C0LGJ1|Y1743_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 57/108 (52%), Gaps = 9/108 (8%)

Query: 22  CQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEG 81
           CQW  + C+   SRV  ++L+D+      + N   F+   +L  LDL+ N I    E E 
Sbjct: 75  CQWPGIICTPQRSRVTGINLTDSTISGPLFKN---FSALTELTYLDLSRNTI----EGEI 127

Query: 82  IERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSI 129
            + LSR +NLK LNLS N     +  SL  LS+L  L+L  NR+ G I
Sbjct: 128 PDDLSRCHNLKHLNLSHNILEGEL--SLPGLSNLEVLDLSLNRITGDI 173

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 10/133 (7%)

Query: 19  TDCCQWERVECSNTMSRVIALDLSD-TYGGEYWYLNASLFTPFQQLESLDLTDNKIASCV 77
           +D C W  V C N    V++L+LS    GGE     +      + L+S+DL  NK+A  +
Sbjct: 56  SDLCSWRGVFCDNVSYSVVSLNLSSLNLGGEI----SPAIGDLRNLQSIDLQGNKLAGQI 111

Query: 78  ENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSL 137
            +E    +    +L  L+LS N     I  S++ L  L +LNL  N+L G +    L  +
Sbjct: 112 PDE----IGNCASLVYLDLSENLLYGDIPFSISKLKQLETLNLKNNQLTGPVPAT-LTQI 166

Query: 138 RDLEELDIGGNKI 150
            +L+ LD+ GN +
Sbjct: 167 PNLKRLDLAGNHL 179

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score = 53.5 bits (127), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 20/155 (12%)

Query: 8   GYKDRKNGEGATDCCQWERVECSNTMS----------RVIALDLSD-TYGGEYWYLNASL 56
           G+K  ++   +++CC W  + C +++S          RV+ L+L      G+     A L
Sbjct: 50  GWKWNESSSFSSNCCDWVGISCKSSVSLGLDDVNESGRVVELELGRRKLSGKLSESVAKL 109

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
                QL+ L+LT N ++  +       L  L+NL++L+LS N F+  +  SL +L SLR
Sbjct: 110 ----DQLKVLNLTHNSLSGSIA----ASLLNLSNLEVLDLSSNDFS-GLFPSLINLPSLR 160

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKID 151
            LN++ N   G I     ++L  + E+D+  N  D
Sbjct: 161 VLNVYENSFHGLIPASLCNNLPRIREIDLAMNYFD 195

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FII5|TDR_ARATH Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana GN=TDR PE=1 SV=1

 Score = 53.5 bits (127), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 13/148 (8%)

Query: 5   PLVGYKDRK---NGEGATDCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQ 61
           P   ++D K   NG+     C W  V C N  ++VI+LDLS        + N S   P Q
Sbjct: 49  PPSAFQDWKVPVNGQNDAVWCSWSGVVCDNVTAQVISLDLS--------HRNLSGRIPIQ 100

Query: 62  -QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 120
            +  S  L  N   + +E      +  L  L  L++S NSF++S    ++ L  L+  N 
Sbjct: 101 IRYLSSLLYLNLSGNSLEGSFPTSIFDLTKLTTLDISRNSFDSSFPPGISKLKFLKVFNA 160

Query: 121 FWNRLEGSIDVKELDSLRDLEELDIGGN 148
           F N  EG +   ++  LR LEEL+ GG+
Sbjct: 161 FSNNFEGLLP-SDVSRLRFLEELNFGGS 187

Acts with CLE41p and CLE44p peptides as a ligand-receptor pair in a signal transduction pathway involved in the regulation of procambium maintenance and polarity during vascular-tissue development. Mediates repression of tracheary element differentiation and the promotion of procambial cells formation and polar division adjacent to phloem cells in the veins.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 25/132 (18%)

Query: 20  DCCQWERVECSNTMSRVIALDLSD-TYGGEYWYLNASLFTPFQQLESLDLTDNK------ 72
           D C W  V C N    V++L+LS+   GGE     +S       L+S+DL  NK      
Sbjct: 59  DFCSWRGVFCDNVSLNVVSLNLSNLNLGGEI----SSALGDLMNLQSIDLQGNKLGGQIP 114

Query: 73  --IASCVENEGIE------------RLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSL 118
             I +CV    ++             +S+L  L+ LNL  N     I ++LT + +L++L
Sbjct: 115 DEIGNCVSLAYVDFSTNLLFGDIPFSISKLKQLEFLNLKNNQLTGPIPATLTQIPNLKTL 174

Query: 119 NLFWNRLEGSID 130
           +L  N+L G I 
Sbjct: 175 DLARNQLTGEIP 186

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 8/135 (5%)

Query: 20  DCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVEN 79
           D C W  V C+N +SRV++LDLS           A+   PF  L++++L++N ++  + +
Sbjct: 59  DVCLWSGVVCNN-ISRVVSLDLSGKNMSGQILTAATFRLPF--LQTINLSNNNLSGPIPH 115

Query: 80  EGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRD 139
           +     S   +L+ LNLS N+F+ SI      L +L +L+L  N   G I   ++    +
Sbjct: 116 DIFTTSSP--SLRYLNLSNNNFSGSIPRGF--LPNLYTLDLSNNMFTGEI-YNDIGVFSN 170

Query: 140 LEELDIGGNKIDKFV 154
           L  LD+GGN +   V
Sbjct: 171 LRVLDLGGNVLTGHV 185

Arabidopsis thaliana (taxid: 3702)

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 24/154 (15%)

Query: 6   LVGYKDRKNG-----EGATDCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNAS-LFTP 59
           L G  D KN      + +T  C W  V C  +   V +LDLS         LN S   +P
Sbjct: 36  LTGAGDDKNSPLSSWKVSTSFCTWIGVTCDVSRRHVTSLDLSG--------LNLSGTLSP 87

Query: 60  ----FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH-LSS 114
                + L++L L +N I+  +  E    +S L+ L+ LNLS N FN S    ++  L +
Sbjct: 88  DVSHLRLLQNLSLAENLISGPIPPE----ISSLSGLRHLNLSNNVFNGSFPDEISSGLVN 143

Query: 115 LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGN 148
           LR L+++ N L G + V  + +L  L  L +GGN
Sbjct: 144 LRVLDVYNNNLTGDLPV-SVTNLTQLRHLHLGGN 176

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGU7|Y5458_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g45840 OS=Arabidopsis thaliana GN=At5g45840 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 50/99 (50%), Gaps = 6/99 (6%)

Query: 89  NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGN 148
           N ++MLNLSG S   ++   L+ LS LRSL L  N+L G I   E  S   LE LD+  N
Sbjct: 74  NKVQMLNLSGCSLGGTLAPELSQLSELRSLILSKNKLSGDIP-NEFASFAKLEFLDLRDN 132

Query: 149 KIDKFVVSKGTTNTIKNANLY----KLAGFFAIWFIILQ 183
            ++  VV       +   NL     K AGF  + F+ LQ
Sbjct: 133 NLNG-VVPPELNKVLTPENLLLSGNKFAGFMTVKFLRLQ 170

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 5/131 (3%)

Query: 30  SNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTD----NKIASCVENEGIERL 85
           SN ++  I  +L +     Y  LN +  T     E   LTD    N   + +E    + L
Sbjct: 316 SNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIPDHL 375

Query: 86  SRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDI 145
           S   NL  LN+ GN F+ +I  +   L S+  LNL  N ++G I V EL  + +L+ LD+
Sbjct: 376 SSCTNLNSLNVHGNKFSGTIPRAFQKLESMTYLNLSSNNIKGPIPV-ELSRIGNLDTLDL 434

Query: 146 GGNKIDKFVVS 156
             NKI+  + S
Sbjct: 435 SNNKINGIIPS 445

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
224142499	436	predicted protein [Populus trichocarpa]	0.755	0.318	0.577	2e-32
224120284	929	predicted protein [Populus trichocarpa]	0.847	0.167	0.479	2e-29
224142717	876	predicted protein [Populus trichocarpa]	0.820	0.172	0.509	2e-29
224142513	290	predicted protein [Populus trichocarpa]	0.815	0.517	0.467	2e-29
224112233	976	leucine rich repeat family protein with	0.831	0.156	0.493	1e-28
224134597	947	predicted protein [Populus trichocarpa]	0.755	0.146	0.524	2e-28
224142721	926	predicted protein [Populus trichocarpa]	0.820	0.163	0.503	3e-28
224134601	196	predicted protein [Populus trichocarpa]	0.739	0.693	0.528	2e-27
224142723	923	predicted protein [Populus trichocarpa]	0.766	0.152	0.5	1e-26
255585991	743	serine-threonine protein kinase, plant-t	0.728	0.180	0.518	1e-26

>gi|224142499|ref|XP_002324594.1| predicted protein [Populus trichocarpa] gi|222866028|gb|EEF03159.1| predicted protein [Populus trichocarpa]

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/142 (57%), Positives = 99/142 (69%), Gaps = 3/142 (2%)

Query: 21  CCQWERVECSN-TMSRVIALDLSDTY--GGEYWYLNASLFTPFQQLESLDLTDNKIASCV 77
           CC W+RV CSN T  RVI ++L  T     E  YLNAS+F PFQ+L  LDL+ N IA CV
Sbjct: 61  CCSWKRVTCSNSTTRRVIEINLYFTRDRSMEDLYLNASIFLPFQELNVLDLSGNGIAGCV 120

Query: 78  ENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSL 137
            NEG ERLSRL  L++L LS N FNNSILSS+  LSSL+ LNL +N+L+GSID KE DSL
Sbjct: 121 ANEGFERLSRLAKLEVLLLSDNYFNNSILSSMKGLSSLKYLNLDFNQLQGSIDTKEFDSL 180

Query: 138 RDLEELDIGGNKIDKFVVSKGT 159
            +LEEL +  N+I  FV   G+
Sbjct: 181 SNLEELSLAKNEIQDFVTLTGS 202

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120284|ref|XP_002331010.1| predicted protein [Populus trichocarpa] gi|222872940|gb|EEF10071.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/167 (47%), Positives = 114/167 (68%), Gaps = 11/167 (6%)

Query: 19  TDCCQWERVECSNTMSRVIALDLSDTYGGEY--WYLNASLFTPFQQLESLDLTDNKIASC 76
            +CC+W++V+C++T  RV+ +DLS + G E   W LNASLF PF +L +L+L  N+IA C
Sbjct: 58  ANCCEWKQVQCNSTTLRVVKIDLSFSRGWELGDWLLNASLFLPFPELNALNLYGNRIAGC 117

Query: 77  VENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVK---- 132
           +ENEG ERLS L NL++L L  N FN+SI SSL  LSSL++L+L  N +EG+I V+    
Sbjct: 118 LENEGFERLSVLGNLEILELGQNKFNSSIFSSLGGLSSLKNLSLHNNEIEGTISVEGGED 177

Query: 133 ELDSLRDLEELDIGGNKIDKFVVS--KGTTNTIKNANLYK--LAGFF 175
           E+  + +LE LD+GGN+ D  ++S  KG + ++KN  L K  L G F
Sbjct: 178 EVLKMSNLEYLDLGGNRFDNSILSSFKGLS-SLKNLGLEKNHLKGTF 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142717|ref|XP_002324701.1| predicted protein [Populus trichocarpa] gi|222866135|gb|EEF03266.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/157 (50%), Positives = 101/157 (64%), Gaps = 6/157 (3%)

Query: 16  EGATDCCQWERVECSNTMSRVIALDLSDTYGGEY--WYLNASLFTPFQQLESLDLTDNKI 73
           +G T CC+WE + CS+   RV  L L      E   WYLN SLF PFQQL SL L+DN+I
Sbjct: 54  KGDTRCCEWESIVCSSRTGRVTGLYLWSVRNQELGDWYLNVSLFLPFQQLNSLILSDNRI 113

Query: 74  ASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKE 133
           A  VE +G   L +L+NLK+L L  NSFNNSILS +  L SL++L L +NRLEG ID+KE
Sbjct: 114 AGWVEKKGGYGLQKLSNLKILALEDNSFNNSILSFVEGLPSLKTLYLDYNRLEGLIDLKE 173

Query: 134 LDSLRDLEELDIGGNKIDKFVVSKGTT--NTIKNANL 168
             SL  L+ L +GGN I K V S+G +  NT+   N+
Sbjct: 174 --SLSSLKHLGLGGNNISKLVASRGPSSLNTLYLGNI 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142513|ref|XP_002324601.1| predicted protein [Populus trichocarpa] gi|222866035|gb|EEF03166.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/171 (46%), Positives = 104/171 (60%), Gaps = 21/171 (12%)

Query: 4   SPLVGYKDRKNGEGATDCCQWERVECSNTMSRVIALDLSDTYG-------GEY------- 49
           SPL+ +     GE A  CC W  V C +   RVI + L +  G       G +       
Sbjct: 48  SPLLSW-----GEDAL-CCNWAGVTCDSITGRVIVIFLHNARGWFIDPSKGVWDRNASMG 101

Query: 50  -WYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSS 108
            WYLNA++F PFQ+L +L L++N IA CV NEG ERLSRL  L+ L+L  N+FNNSILSS
Sbjct: 102 DWYLNATMFLPFQELNTLGLSNNDIAGCVPNEGFERLSRLTKLESLDLGLNNFNNSILSS 161

Query: 109 LTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGT 159
              LSSL+ + L  N+L+GSID+KE DSL  L+ELD+  N+I   V S G+
Sbjct: 162 FKGLSSLKHIYLESNQLKGSIDIKEFDSLSKLQELDLSRNEIQNLVTSTGS 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112233|ref|XP_002332812.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa] gi|222833206|gb|EEE71683.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/158 (49%), Positives = 101/158 (63%), Gaps = 5/158 (3%)

Query: 19  TDCCQWERVECSNTMSRVIALDLSDTYGGEY--WYLNASLFTPFQQLESLDLTDNKIASC 76
             CC WE + C+++  RV  LDL      +   WYLNASLF PFQQL  L L +N+IA  
Sbjct: 51  AHCCDWESIVCNSSTGRVTVLDLWGVRNEDLGDWYLNASLFLPFQQLNVLYLWNNRIAGW 110

Query: 77  VENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDS 136
           VEN+G   L +L+NL+ L L  NSFNNSILS +  L SL+SL L +NRLEG ID+KE  S
Sbjct: 111 VENKGGSELQKLSNLESLYLEDNSFNNSILSFVEGLPSLKSLYLSYNRLEGLIDLKE--S 168

Query: 137 LRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGF 174
           L  LE L +GGN I K V S+G +N ++  +LY +  +
Sbjct: 169 LSSLETLGLGGNNISKLVASRGLSN-LRYLSLYNITTY 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134597|ref|XP_002327443.1| predicted protein [Populus trichocarpa] gi|222835997|gb|EEE74418.1| predicted protein [Populus trichocarpa]

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/145 (52%), Positives = 93/145 (64%), Gaps = 6/145 (4%)

Query: 19  TDCCQWERVECSNTMSRVIALDLSDTYGGEY--WYLNASLFTPFQQLESLDLTDNKIASC 76
             CC WER+ECS    RV  L L +T   E   WYLNASL  PFQ+L++L+L  N++A  
Sbjct: 58  AHCCSWERIECST--GRVTELHLEETRNEELGDWYLNASLLLPFQELKALNLRGNRLAGW 115

Query: 77  VENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDS 136
           VE +G   L RL NL  LNL  NSF+NSILS +    SL+SL L +NRLEG ID+KE  S
Sbjct: 116 VEKKGGYELQRLRNLDYLNLRSNSFDNSILSYVEGFPSLKSLYLDYNRLEGLIDLKE--S 173

Query: 137 LRDLEELDIGGNKIDKFVVSKGTTN 161
           L  LE L + GN IDK V S+G +N
Sbjct: 174 LSSLEVLGLSGNNIDKLVASRGPSN 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142721|ref|XP_002324703.1| predicted protein [Populus trichocarpa] gi|222866137|gb|EEF03268.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/155 (50%), Positives = 97/155 (62%), Gaps = 4/155 (2%)

Query: 17  GATDCCQWERVECSNTMSRVIALDLSDTYGGEY--WYLNASLFTPFQQLESLDLTDNKIA 74
              +CC WER+ C+++  RV  L L  T   E   WYLNASLF PFQQL  L L  N+IA
Sbjct: 54  AHANCCDWERIVCNSSTGRVTELYLGSTRNEELGDWYLNASLFLPFQQLNILYLWGNRIA 113

Query: 75  SCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKEL 134
             VE +G   L +L+NL++L+L  NSFNNSILS +  L SL+SL L +NRLEGSID+KE 
Sbjct: 114 GWVEKKGGYELQKLSNLEILDLESNSFNNSILSFVEGLPSLKSLYLDYNRLEGSIDLKE- 172

Query: 135 DSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLY 169
            SL  LE L +GGN I   V S+   N     +LY
Sbjct: 173 -SLTSLETLSLGGNNISNLVASRELQNLSSLESLY 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134601|ref|XP_002327444.1| predicted protein [Populus trichocarpa] gi|222835998|gb|EEE74419.1| predicted protein [Populus trichocarpa]

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 91/142 (64%), Gaps = 6/142 (4%)

Query: 19  TDCCQWERVECSNTMSRVIALDLSDTYGGEY--WYLNASLFTPFQQLESLDLTDNKIASC 76
             CC WER+ECS    RV  L L +T   E   WYLNASL  PFQ+L++L+L  N++A  
Sbjct: 58  AHCCSWERIECST--GRVTELHLEETRNEELGDWYLNASLLLPFQELKALNLRGNRLAGW 115

Query: 77  VENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDS 136
           VE +G   L RL NL  LNL  NSF+NSILS +    SL+SL L +NRLEG ID+KE  S
Sbjct: 116 VEKKGGYELQRLRNLDYLNLRSNSFDNSILSYVEGFPSLKSLYLDYNRLEGLIDLKE--S 173

Query: 137 LRDLEELDIGGNKIDKFVVSKG 158
           L  LE L + GN IDK V S+G
Sbjct: 174 LSSLEVLGLSGNNIDKLVASRG 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142723|ref|XP_002324704.1| predicted protein [Populus trichocarpa] gi|222866138|gb|EEF03269.1| predicted protein [Populus trichocarpa]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/146 (50%), Positives = 92/146 (63%), Gaps = 5/146 (3%)

Query: 16  EGATDCCQWERVECSNTMSRVIALDLSDTYGGEY--WYLNASLFTPFQQLESLDLTDNKI 73
           +G   CC WE + C ++  RV  LDL      E   WYLNASLF PFQQL  L LT N+I
Sbjct: 40  KGDAHCCDWESIICDSSTGRVTELDLEGVRDRELGDWYLNASLFLPFQQLNGLYLTANRI 99

Query: 74  ASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVK- 132
           A  VE +G    SRL+NL+ L+L  N F+NSILS +  LSSL+SL L +NRLEG ID+K 
Sbjct: 100 AGLVEKKGGYEQSRLSNLEYLDLGINGFDNSILSYVERLSSLKSLYLNYNRLEGLIDLKG 159

Query: 133 --ELDSLRDLEELDIGGNKIDKFVVS 156
             EL    +LE LD+G N+ D  ++S
Sbjct: 160 GYELTKSSNLEHLDLGYNRFDNSILS 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585991|ref|XP_002533665.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526433|gb|EEF28711.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 95/137 (69%), Gaps = 3/137 (2%)

Query: 20  DCCQWERVECSNTMSRVIALDLSDTYGG---EYWYLNASLFTPFQQLESLDLTDNKIASC 76
           DCC W +V C+    RV AL L  T  G   + WYLNASLF PFQ+L++L +  N IA C
Sbjct: 48  DCCNWNKVVCNTITGRVTALQLGGTRHGWDSKDWYLNASLFLPFQELKNLSVFGNNIAGC 107

Query: 77  VENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDS 136
           +ENEG ERLS L NL++LNL  N+FNN+ILS  +  SSL+SL +  N+L+G ++V+EL+ 
Sbjct: 108 IENEGFERLSTLENLEILNLGYNNFNNNILSFFSDFSSLKSLYMNDNKLKGILNVEELNY 167

Query: 137 LRDLEELDIGGNKIDKF 153
           L  LEEL + GN+I+ F
Sbjct: 168 LTSLEELKMAGNQIEGF 184

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.722	0.146	0.328	3.4e-15
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.722	0.142	0.299	3.4e-12
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.451	0.085	0.413	5.5e-11
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.380	0.096	0.391	2.5e-08
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.619	0.118	0.260	5.2e-08
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.429	0.093	0.357	3.2e-07
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.423	0.082	0.373	1.6e-06
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.461	0.097	0.318	2.4e-06
TAIR|locus:2119445	719	AT4G13820 [Arabidopsis thalian	0.494	0.126	0.315	5e-06
TAIR|locus:2825389	784	RLP11 "AT1G71390" [Arabidopsis	0.396	0.093	0.373	7.1e-06

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 3.4e-15, P = 3.4e-15
 Identities = 44/134 (32%), Positives = 67/134 (50%)

Query:    19 TDCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVE 78
             +DCCQWE ++C+ T  R+  L L  +Y  E   LN SL  PF+++ SLDL+++++   V+
Sbjct:    50 SDCCQWENIKCNRTSRRLTGLSLYTSYYLEISLLNLSLLHPFEEVRSLDLSNSRLNGLVD 109

Query:    79 N-EGIERLSRLNNLKMLNLSGNSFXXXXXXXXXXXXXXXXXXXFWNRLEGSIDVKXXXXX 137
             + EG + L RL NL++LN S N F                     N + G I +K     
Sbjct:   110 DVEGYKSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNL 169

Query:   138 XXXXXXXIGGNKID 151
                    + GN+ID
Sbjct:   170 TNLELLDLSGNRID 183

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 3.4e-12, P = 3.4e-12
 Identities = 41/137 (29%), Positives = 65/137 (47%)

Query:    19 TDCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTD---NKIAS 75
             +DCCQW+ ++C+ T  RVI L + D Y  E   LN SL  PF+++ SL+L+    N+   
Sbjct:    50 SDCCQWDGIKCNRTSGRVIELSVGDMYFKESSPLNLSLLHPFEEVRSLNLSTEGYNEFNG 109

Query:    76 CVEN-EGIERLSRLNNLKMLNLSGNSFXXXXXXXXXXXXXXXXXXXFWNRLEGSIDVKXX 134
               ++ EG   LS L NLK+++LS N F                    +N ++G   +K  
Sbjct:   110 FFDDVEGYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGL 169

Query:   135 XXXXXXXXXXIGGNKID 151
                       +  NK++
Sbjct:   170 KDLTNLELLDLRANKLN 186

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 5.5e-11, P = 5.5e-11
 Identities = 36/87 (41%), Positives = 54/87 (62%)

Query:    19 TDCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTD---NKIAS 75
             ++CC+WE ++C+ T  R+I L +  T   E   LN SL  PF++L SL+L+    N+   
Sbjct:    64 SNCCRWEGLKCNQTSGRIIELSIGQTNFKESSLLNLSLLHPFEELRSLNLSGEIYNEFNG 123

Query:    76 CVEN-EGIERLSRLNNLKMLNLSGNSF 101
               ++ EG E L RL NL++L+LS NSF
Sbjct:   124 LFDDVEGYESLRRLRNLEILDLSSNSF 150

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
 Identities = 29/74 (39%), Positives = 39/74 (52%)

Query:    19 TDCCQWERVECSNTMSRVIALDL-SDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCV 77
             TDCC W RV C     +V+ LDL S    G     N+SLF   Q L+SL+L+ N I+  +
Sbjct:    71 TDCCSWNRVSCDPKTGKVVELDLMSSCLNGPL-RSNSSLFR-LQHLQSLELSSNNISGIL 128

Query:    78 ENEGIERLSRLNNL 91
               + I  L  L +L
Sbjct:   129 P-DSIGNLKYLRSL 141

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 5.2e-08, P = 5.2e-08
 Identities = 30/115 (26%), Positives = 53/115 (46%)

Query:    19 TDCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVE 78
             +DCC+W+ V C+    RV  +        +   LN SL  PF+ + SL+L+ ++ +   +
Sbjct:    61 SDCCRWKGVACNRVSGRVTEISFGGLSLKDNSLLNLSLLHPFEDVRSLNLSSSRCSGLFD 120

Query:    79 N-EGIERLSRLNNLKMLNLSGNSFXXXXXXXXXXXXXXXXXXXFWNRLEGSIDVK 132
             + EG + L +L  L++L+L+ N F                     N ++GS   K
Sbjct:   121 DVEGYKSLRKLRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGSFPAK 175

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query:    18 ATDCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCV 77
             +TDCC W  V C++   +VI+LD+ +T+   Y   N+SLF   Q L  LDLT+  +   +
Sbjct:    68 STDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFK-LQYLRHLDLTNCNLYGEI 126

Query:    78 ENEGIERLSRLNNLKMLNLSGNSF 101
              +     L  L++L ++NL  N F
Sbjct:   127 PSS----LGNLSHLTLVNLYFNKF 146

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 31/83 (37%), Positives = 44/83 (53%)

Query:    19 TDCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVE 78
             +DCC WE + C      VI LDLS ++    ++ N+SLF   Q L  LDLT N +    +
Sbjct:    84 SDCCNWEGITCDTKSGEVIELDLSCSWLYGSFHSNSSLFR-LQNLRVLDLTQNDL----D 138

Query:    79 NEGIERLSRLNNLKMLNLSGNSF 101
              E    +  L++L  L+LS N F
Sbjct:   139 GEIPSSIGNLSHLTSLHLSYNQF 161

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 29/91 (31%), Positives = 48/91 (52%)

Query:    13 KNGEGATDCCQWERVECSNTMSRVIALDL--SDTYGGEYWYLNASLFTPFQQLESLDLTD 70
             K+ E  +DCC W+ + C      VI +DL  S  +G  +   N S+   F  L +LDL+ 
Sbjct:    61 KSWENGSDCCHWDGITCDAKTGEVIEIDLMCSCLHGWFHSNSNLSMLQNFHFLTTLDLSY 120

Query:    71 NKIASCVENEGIERLSRLNNLKMLNLSGNSF 101
             N ++  + +     +  L++L  L+LSGN+F
Sbjct:   121 NHLSGQISSS----IGNLSHLTTLDLSGNNF 147

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2119445 AT4G13820 [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 5.0e-06, P = 5.0e-06
 Identities = 30/95 (31%), Positives = 48/95 (50%)

Query:     6 LVGYKDRKNGEGATDCCQWERVECSNTMSRVIALDLSDTY-GGEYWYLNASLFTPFQQLE 64
             +VG K  +     TDCC W+ + C     +V+ LDL +++  G   Y ++SLF   Q L 
Sbjct:    54 IVGVKKTEKWRNNTDCCSWDGISCDPKTGKVVELDLMNSFLNGPLRY-DSSLFR-LQHLH 111

Query:    65 SLDLTDNKIASCVENE-GIERLSRLNNLKMLNLSG 98
             +LDL  N  +  + +  G  +  R+ +L   NL G
Sbjct:   112 NLDLGSNNFSGILPDSIGSLKYLRVLSLGDCNLFG 146

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000303 "response to superoxide" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 7.1e-06, P = 7.1e-06
 Identities = 28/75 (37%), Positives = 40/75 (53%)

Query:    19 TDCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVE 78
             TDCC W+ V C +   +VI+LDL  T        N+SLF   Q L  LDL+   +   + 
Sbjct:    61 TDCCSWDGVTCDDKSGQVISLDLRSTLLNSSLKTNSSLFR-LQYLRHLDLSGCNLHGEIP 119

Query:    79 NEGIERLSRLNNLKM 93
             +  +  LSRL NL++
Sbjct:   120 SS-LGNLSRLENLEL 133

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_XVIII001026	hypothetical protein (436 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.98780001	hypothetical protein (301 aa)			•						0.430
	eugene3.00110941	hypothetical protein (581 aa)			•						0.424

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	184
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 6e-07
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 4/70 (5%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
            + L+S++L+ N I           L  + +L++L+LS NSFN SI  SL  L+SLR LN
Sbjct: 441 LRHLQSINLSGNSI----RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 120 LFWNRLEGSI 129
           L  N L G +
Sbjct: 497 LNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 6/77 (7%)

Query: 77  VENEGI-----ERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV 131
           ++N+G+       +S+L +L+ +NLSGNS   +I  SL  ++SL  L+L +N   GSI  
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP- 483

Query: 132 KELDSLRDLEELDIGGN 148
           + L  L  L  L++ GN
Sbjct: 484 ESLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 7e-06
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 8/66 (12%)

Query: 62  QLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
            L+SLDL++N++        I       L NLK+L+LSGN+  +    + + L SLRSL+
Sbjct: 1   NLKSLDLSNNRLTV------IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLD 54

Query: 120 LFWNRL 125
           L  N L
Sbjct: 55  LSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.8 bits (106), Expect = 9e-06
 Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 5/88 (5%)

Query: 63  LESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFW 122
           LE+LDL++N ++  + N+    +   ++LK+L+L GN     I +SLT+L+SL  L L  
Sbjct: 142 LETLDLSNNMLSGEIPND----IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 123 NRLEGSIDVKELDSLRDLEELDIGGNKI 150
           N+L G I   EL  ++ L+ + +G N +
Sbjct: 198 NQLVGQIPR-ELGQMKSLKWIYLGYNNL 224

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 62  QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLF 121
            L+ L L  NK        G+        L+ L+LS N F+ ++   L  LS L  L L 
Sbjct: 453 SLQMLSLARNKFFG-----GLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507

Query: 122 WNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            N+L G I   EL S + L  LD+  N++
Sbjct: 508 ENKLSGEIP-DELSSCKKLVSLDLSHNQL 535

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 16/106 (15%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGI----ERLSRLNNLKMLNLSGNSFNNSILSSL--- 109
                 LE LDL +N +     +EG     E L+ L +L++LNL  N+  ++  ++L   
Sbjct: 189 LKANCNLEVLDLNNNGL----TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASA 244

Query: 110 --THLSSLRSLNLFWNRLE--GSIDVKE-LDSLRDLEELDIGGNKI 150
             +   SL +L+L  N +   G+ D+ E L     L ELD+ GNK 
Sbjct: 245 LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 6/96 (6%)

Query: 55  SLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 114
           S+F+  Q+L SLDL+DN ++     E  E + +L NL++L+L  N+F   I  +LT L  
Sbjct: 279 SIFS-LQKLISLDLSDNSLSG----EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333

Query: 115 LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L+ L L+ N+  G I  K L    +L  LD+  N +
Sbjct: 334 LQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNL 368

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 15/100 (15%)

Query: 63  LESLDLTDNKIASCVENEGIERLSRL----NNLKMLNLSGNSFNN----SILSSLTHLSS 114
           LE L L  N++    E    E L++      +LK LNL+ N   +    ++   L    +
Sbjct: 139 LEKLVLGRNRL----EGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCN 194

Query: 115 LRSLNLFWNRL--EGSIDVKE-LDSLRDLEELDIGGNKID 151
           L  L+L  N L  EG+  + E L SL+ LE L++G N + 
Sbjct: 195 LEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
                +L  L L++NK++  + +E    LS    L  L+LS N  +  I +S + +  L 
Sbjct: 495 LGSLSELMQLKLSENKLSGEIPDE----LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGN 148
            L+L  N+L G I  K L ++  L +++I  N
Sbjct: 551 QLDLSQNQLSGEIP-KNLGNVESLVQVNISHN 581

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 120
           ++LE+LDL+ N+ +  V      +L  L+ L  L LS N  +  I   L+    L SL+L
Sbjct: 475 KRLENLDLSRNQFSGAVPR----KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530

Query: 121 FWNRLEGSI 129
             N+L G I
Sbjct: 531 SHNQLSGQI 539

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 90  NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK 149
           NLK L+LS N        +   L +L+ L+L  N L  SI  +    L  L  LD+ GN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 150 I 150
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 58  TPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRS 117
           T    LE L L  N++   +  E    L ++ +LK + L  N+ +  I   +  L+SL  
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRE----LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240

Query: 118 LNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L+L +N L G I    L +L++L+ L +  NK+
Sbjct: 241 LDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKL 272

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 42/138 (30%), Positives = 55/138 (39%), Gaps = 28/138 (20%)

Query: 33  MSRVIALDLSDTY-GGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL--- 88
           + ++I+LDLSD    GE   L   L    Q LE L L  N     +    +  L RL   
Sbjct: 283 LQKLISLDLSDNSLSGEIPELVIQL----QNLEILHLFSNNFTGKIP-VALTSLPRLQVL 337

Query: 89  ------------------NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSID 130
                             NNL +L+LS N+    I   L    +L  L LF N LEG I 
Sbjct: 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397

Query: 131 VKELDSLRDLEELDIGGN 148
            K L + R L  + +  N
Sbjct: 398 -KSLGACRSLRRVRLQDN 414

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 41/158 (25%), Positives = 82/158 (51%), Gaps = 28/158 (17%)

Query: 14  NGEGATDCCQWERVECSNTMSRVIALDLS-DTYGGEYWYLNASLFT-PFQQLESLDLTDN 71
           N   + D C W+ + C+N+ SRV+++DLS     G+   +++++F  P+  +++++L++N
Sbjct: 50  NWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGK---ISSAIFRLPY--IQTINLSNN 103

Query: 72  KIASCVENE------GIERLSRLNN-------------LKMLNLSGNSFNNSILSSLTHL 112
           +++  + ++       +  L+  NN             L+ L+LS N  +  I + +   
Sbjct: 104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSF 163

Query: 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           SSL+ L+L  N L G I    L +L  LE L +  N++
Sbjct: 164 SSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQL 200

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 8/90 (8%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 120
             L +LDL+ NKI+  +  E    +  L+ L+ L+LS NS    +LSSL++L +L  L L
Sbjct: 186 SNLNNLDLSGNKISD-LPPE----IELLSALEELDLSNNS-IIELLSSLSNLKNLSGLEL 239

Query: 121 FWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
             N+LE   +   + +L +LE LD+  N+I
Sbjct: 240 SNNKLEDLPES--IGNLSNLETLDLSNNQI 267

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.76
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.56
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.55
PLN03150	623	hypothetical protein; Provisional	99.48
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.45
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.4
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.25
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.19
PLN03150	623	hypothetical protein; Provisional	99.12
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.09
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.04
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.99
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.94
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.93
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.92
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.89
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.69
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.65
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.63
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.57
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.56
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.52
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.52
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.5
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.45
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.31
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.31
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.3
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.28
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.28
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.2
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.17
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.17
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.05
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.97
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.96
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.95
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.94
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.94
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.72
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.66
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.65
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.5
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.4
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.39
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.38
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.09
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.04
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.99
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.87
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.69
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.59
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	96.47
PRK15386	426	type III secretion protein GogB; Provisional	96.23
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.23
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.12
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.84
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.59
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.51
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	94.42
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.27
PRK15386	426	type III secretion protein GogB; Provisional	94.12
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.28
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.59
smart00370	26	LRR Leucine-rich repeats, outliers.	92.59
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.17
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.43
KOG1947	482	consensus Leucine rich repeat proteins, some prote	86.37
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.22
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.03

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.76  E-value=5.8e-18  Score=151.15  Aligned_cols=159  Identities=25%  Similarity=0.341  Sum_probs=101.3

Q ss_pred             cccCCCCCCCCCCCCceeEEecCCCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCC
Q 038485            9 YKDRKNGEGATDCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL   88 (184)
Q Consensus         9 ~~~~~~~~~~~~~c~~~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l   88 (184)
                      ..++.|+ .+.++|.|.||.|.+ .++++.|++++|.+..   ..+..|..+++|+.|++++|.+.+..|...   +..+
T Consensus        46 ~~~~~w~-~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~---~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~---~~~l  117 (968)
T PLN00113         46 KYLSNWN-SSADVCLWQGITCNN-SSRVVSIDLSGKNISG---KISSAIFRLPYIQTINLSNNQLSGPIPDDI---FTTS  117 (968)
T ss_pred             ccCCCCC-CCCCCCcCcceecCC-CCcEEEEEecCCCccc---cCChHHhCCCCCCEEECCCCccCCcCChHH---hccC
Confidence            3467896 377899999999986 5689999999988876   445556777788888888877776666541   2245


Q ss_pred             CCCcEEECCCCCC----------------------CchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECC
Q 038485           89 NNLKMLNLSGNSF----------------------NNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIG  146 (184)
Q Consensus        89 ~~L~~L~l~~n~~----------------------~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls  146 (184)
                      ++|++|++++|.+                      .+..|..++.+++|++|++++|.+.+.+|. .+..+++|++|+++
T Consensus       118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~  196 (968)
T PLN00113        118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLA  196 (968)
T ss_pred             CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeecc
Confidence            5555555555554                      444455555566666666666665545554 55566666666666


Q ss_pred             CCCCCccccCccccccccceeeccccccceee
Q 038485          147 GNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       147 ~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      +|.+.+.+|  ..+..+++|+.+++++|.+.+
T Consensus       197 ~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~  226 (968)
T PLN00113        197 SNQLVGQIP--RELGQMKSLKWIYLGYNNLSG  226 (968)
T ss_pred             CCCCcCcCC--hHHcCcCCccEEECcCCccCC
Confidence            666655444  233345555566666665543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.56  E-value=4.2e-16  Score=128.08  Aligned_cols=136  Identities=26%  Similarity=0.368  Sum_probs=111.2

Q ss_pred             ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCC
Q 038485           35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS  114 (184)
Q Consensus        35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~  114 (184)
                      .++.|.|..|.+..   +....|..+.+++.|+++.|+++......    +.+++.|+.|++++|.|....++.+....+
T Consensus       246 Sl~nlklqrN~I~k---L~DG~Fy~l~kme~l~L~~N~l~~vn~g~----lfgLt~L~~L~lS~NaI~rih~d~Wsftqk  318 (873)
T KOG4194|consen  246 SLQNLKLQRNDISK---LDDGAFYGLEKMEHLNLETNRLQAVNEGW----LFGLTSLEQLDLSYNAIQRIHIDSWSFTQK  318 (873)
T ss_pred             hhhhhhhhhcCccc---ccCcceeeecccceeecccchhhhhhccc----ccccchhhhhccchhhhheeecchhhhccc
Confidence            34444455555554   66778888888999999999888766555    788899999999999998888888888899


Q ss_pred             CcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeEE
Q 038485          115 LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWFI  180 (184)
Q Consensus       115 L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~  180 (184)
                      |+.|++++|+++ +++.+.+..+..|+.|++++|.++...  .++|..+++|..++|++|.++|.|
T Consensus       319 L~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~--e~af~~lssL~~LdLr~N~ls~~I  381 (873)
T KOG4194|consen  319 LKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLA--EGAFVGLSSLHKLDLRSNELSWCI  381 (873)
T ss_pred             ceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHH--hhHHHHhhhhhhhcCcCCeEEEEE
Confidence            999999999998 788778888888999999999988743  477888999999999999999876

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.55  E-value=1.6e-14  Score=129.24  Aligned_cols=134  Identities=26%  Similarity=0.333  Sum_probs=68.9

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.+..   ..+..+..+++|++|++++|.+.+..|..    +..+++|++|++++|.+.+..|..++.+
T Consensus       139 l~~L~~L~Ls~n~~~~---~~p~~~~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~~p~~l~~l  211 (968)
T PLN00113        139 IPNLETLDLSNNMLSG---EIPNDIGSFSSLKVLDLGGNVLVGKIPNS----LTNLTSLEFLTLASNQLVGQIPRELGQM  211 (968)
T ss_pred             cCCCCEEECcCCcccc---cCChHHhcCCCCCEEECccCcccccCChh----hhhCcCCCeeeccCCCCcCcCChHHcCc
Confidence            3445555555555443   22233455556666666666555555544    5555555555555555555555555555


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccce
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFA  176 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~  176 (184)
                      .+|+.|++++|.+.+.+|. .++.+++|++|++++|.+.+..|  ..+..+++|+.++++.|.+
T Consensus       212 ~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l  272 (968)
T PLN00113        212 KSLKWIYLGYNNLSGEIPY-EIGGLTSLNHLDLVYNNLTGPIP--SSLGNLKNLQYLFLYQNKL  272 (968)
T ss_pred             CCccEEECcCCccCCcCCh-hHhcCCCCCEEECcCceeccccC--hhHhCCCCCCEEECcCCee
Confidence            5555555555555544444 45555555555555555554433  2223344444444444444

>PLN03150 hypothetical protein; Provisional

Probab=99.48  E-value=4.2e-13  Score=114.88  Aligned_cols=125  Identities=27%  Similarity=0.333  Sum_probs=106.0

Q ss_pred             CceeEEecCCC----CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCC
Q 038485           23 QWERVECSNTM----SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSG   98 (184)
Q Consensus        23 ~~~gv~c~~~~----~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~   98 (184)
                      .|.||.|....    ..++.|+|++|.+.+   ..+..+..+++|+.|++++|.+.+..|..    +..+++|+.|++++
T Consensus       403 ~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g---~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~----~~~l~~L~~LdLs~  475 (623)
T PLN03150        403 PWSGADCQFDSTKGKWFIDGLGLDNQGLRG---FIPNDISKLRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSY  475 (623)
T ss_pred             ccccceeeccCCCCceEEEEEECCCCCccc---cCCHHHhCCCCCCEEECCCCcccCcCChH----HhCCCCCCEEECCC
Confidence            79999995311    258899999999986   44455688999999999999999999887    89999999999999


Q ss_pred             CCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCC-CCCcEEECCCCCCCcccc
Q 038485           99 NSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSL-RDLEELDIGGNKIDKFVV  155 (184)
Q Consensus        99 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~-~~L~~L~ls~N~l~~~~~  155 (184)
                      |.+++.+|+.++.+++|+.|++++|.++|.+|. .+... .++..+++.+|......|
T Consensus       476 N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA-ALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCCCCCCchHHhcCCCCCEEECcCCcccccCCh-HHhhccccCceEEecCCccccCCC
Confidence            999999999999999999999999999999997 56553 567888998887544333

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.45  E-value=9.5e-15  Score=120.23  Aligned_cols=137  Identities=24%  Similarity=0.263  Sum_probs=94.9

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      +.++.+|+|+.|+++.   +..+.+.++..|+.|++|.|.|+...++.    +..-++|++|++++|+++...++.|..+
T Consensus       268 l~kme~l~L~~N~l~~---vn~g~lfgLt~L~~L~lS~NaI~rih~d~----WsftqkL~~LdLs~N~i~~l~~~sf~~L  340 (873)
T KOG4194|consen  268 LEKMEHLNLETNRLQA---VNEGWLFGLTSLEQLDLSYNAIQRIHIDS----WSFTQKLKELDLSSNRITRLDEGSFRVL  340 (873)
T ss_pred             ecccceeecccchhhh---hhcccccccchhhhhccchhhhheeecch----hhhcccceeEeccccccccCChhHHHHH
Confidence            5677888888888887   77777778888888888888888777776    7777788888888888876666666666


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCc-cccccccceeecccccccee
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSK-GTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~-~~~~~l~~L~~~~l~~~~~~  177 (184)
                      ..|+.|.++.|.+. .+..+.|..+.+|++||+++|.++..+.+. ..|..|++|..+.+.+|.+.
T Consensus       341 ~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk  405 (873)
T KOG4194|consen  341 SQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK  405 (873)
T ss_pred             HHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence            66777777777665 555556666666666666666666554432 33445555555555555553

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.40  E-value=3.7e-15  Score=106.02  Aligned_cols=130  Identities=24%  Similarity=0.354  Sum_probs=102.4

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ++.++.|.+++|.++.   +++.+ ..+.+|+.|++.+|++... |.+    ++.++.|+.|++..|++. ..|.+|+.+
T Consensus        32 ~s~ITrLtLSHNKl~~---vppni-a~l~nlevln~~nnqie~l-p~~----issl~klr~lnvgmnrl~-~lprgfgs~  101 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTV---VPPNI-AELKNLEVLNLSNNQIEEL-PTS----ISSLPKLRILNVGMNRLN-ILPRGFGSF  101 (264)
T ss_pred             hhhhhhhhcccCceee---cCCcH-HHhhhhhhhhcccchhhhc-Chh----hhhchhhhheecchhhhh-cCccccCCC
Confidence            6788999999999885   66665 8889999999999999854 444    889999999999999887 789999999


Q ss_pred             CCCcEEeCCCccccC-cccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccce
Q 038485          113 SSLRSLNLFWNRLEG-SIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFA  176 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~-~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~  176 (184)
                      +.|+.||+.+|.+.. .+|. .|-.++.|+.|+++.|.+.-.+|+.+.   |++|.++.++.|++
T Consensus       102 p~levldltynnl~e~~lpg-nff~m~tlralyl~dndfe~lp~dvg~---lt~lqil~lrdndl  162 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPG-NFFYMTTLRALYLGDNDFEILPPDVGK---LTNLQILSLRDNDL  162 (264)
T ss_pred             chhhhhhccccccccccCCc-chhHHHHHHHHHhcCCCcccCChhhhh---hcceeEEeeccCch
Confidence            999999999888763 3554 676777788888888887766665554   66667777776665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.25  E-value=6.5e-12  Score=90.89  Aligned_cols=110  Identities=29%  Similarity=0.389  Sum_probs=43.8

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhh-cc
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-TH  111 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~-~~  111 (184)
                      +.++++|+|++|.++.   +.. .-..+.+|+.|++++|.+.....      +..++.|+.|++++|.++. +.+.+ ..
T Consensus        18 ~~~~~~L~L~~n~I~~---Ie~-L~~~l~~L~~L~Ls~N~I~~l~~------l~~L~~L~~L~L~~N~I~~-i~~~l~~~   86 (175)
T PF14580_consen   18 PVKLRELNLRGNQIST---IEN-LGATLDKLEVLDLSNNQITKLEG------LPGLPRLKTLDLSNNRISS-ISEGLDKN   86 (175)
T ss_dssp             ---------------------S---TT-TT--EEE-TTS--S--TT----------TT--EEE--SS---S--CHHHHHH
T ss_pred             cccccccccccccccc---ccc-hhhhhcCCCEEECCCCCCccccC------ccChhhhhhcccCCCCCCc-cccchHHh
Confidence            3467899999999986   332 11357899999999999986532      7889999999999999994 43344 46


Q ss_pred             CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcc
Q 038485          112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF  153 (184)
Q Consensus       112 l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~  153 (184)
                      +++|+.|++++|++.+.-....+..+++|+.|++.+|+++..
T Consensus        87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            899999999999997322223577899999999999999864

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.19  E-value=3.8e-13  Score=95.83  Aligned_cols=131  Identities=21%  Similarity=0.309  Sum_probs=104.6

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCc-hhHHhhcc
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNN-SILSSLTH  111 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~  111 (184)
                      ..+++.|++.+|++++   +|.++ +.+++|+.|+++.|.+. ..|..    |+.+|.|+.||+.+|++.. .+|..|-.
T Consensus        55 l~nlevln~~nnqie~---lp~~i-ssl~klr~lnvgmnrl~-~lprg----fgs~p~levldltynnl~e~~lpgnff~  125 (264)
T KOG0617|consen   55 LKNLEVLNLSNNQIEE---LPTSI-SSLPKLRILNVGMNRLN-ILPRG----FGSFPALEVLDLTYNNLNENSLPGNFFY  125 (264)
T ss_pred             hhhhhhhhcccchhhh---cChhh-hhchhhhheecchhhhh-cCccc----cCCCchhhhhhccccccccccCCcchhH
Confidence            5578899999999997   77775 88999999999999887 45655    9999999999999988864 35777777


Q ss_pred             CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485          112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       112 l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      +..|+.|+++.|.+. -+|. .++.+++|+.|.+..|.+-..+...+.   |+.|..+++.+|+++
T Consensus       126 m~tlralyl~dndfe-~lp~-dvg~lt~lqil~lrdndll~lpkeig~---lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  126 MTTLRALYLGDNDFE-ILPP-DVGKLTNLQILSLRDNDLLSLPKEIGD---LTRLRELHIQGNRLT  186 (264)
T ss_pred             HHHHHHHHhcCCCcc-cCCh-hhhhhcceeEEeeccCchhhCcHHHHH---HHHHHHHhcccceee
Confidence            888888999999887 7777 788999999999998888766544444   455555566777664

>PLN03150 hypothetical protein; Provisional

Probab=99.12  E-value=2.2e-10  Score=98.30  Aligned_cols=91  Identities=33%  Similarity=0.536  Sum_probs=84.9

Q ss_pred             CCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCc
Q 038485           62 QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLE  141 (184)
Q Consensus        62 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~  141 (184)
                      .++.|++++|.+.+..|..    +..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|. .++.+++|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~----i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~  493 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPND----ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLR  493 (623)
T ss_pred             EEEEEECCCCCccccCCHH----HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCC
Confidence            4788999999999999988    99999999999999999999999999999999999999999988987 899999999


Q ss_pred             EEECCCCCCCccccCc
Q 038485          142 ELDIGGNKIDKFVVSK  157 (184)
Q Consensus       142 ~L~ls~N~l~~~~~~~  157 (184)
                      .|++++|++++.+|..
T Consensus       494 ~L~Ls~N~l~g~iP~~  509 (623)
T PLN03150        494 ILNLNGNSLSGRVPAA  509 (623)
T ss_pred             EEECcCCcccccCChH
Confidence            9999999999988753

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.09  E-value=2.1e-11  Score=96.60  Aligned_cols=148  Identities=26%  Similarity=0.318  Sum_probs=122.0

Q ss_pred             CCCCCCc---eeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhh
Q 038485           18 ATDCCQW---ERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERL   85 (184)
Q Consensus        18 ~~~~c~~---~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~   85 (184)
                      ..+-|+-   ..|.|...         +...++++|..|+|..   +|+..|..+++|+.+|+++|.|+.+.|++    |
T Consensus        39 ~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~---iP~~aF~~l~~LRrLdLS~N~Is~I~p~A----F  111 (498)
T KOG4237|consen   39 APCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISS---IPPGAFKTLHRLRRLDLSKNNISFIAPDA----F  111 (498)
T ss_pred             CCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCccc---CChhhccchhhhceecccccchhhcChHh----h
Confidence            4444554   45778652         5678999999999998   99999999999999999999999999988    9


Q ss_pred             cCCCCCcEEECCC-CCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCcccccccc
Q 038485           86 SRLNNLKMLNLSG-NSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIK  164 (184)
Q Consensus        86 ~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~  164 (184)
                      .+++++..|.+.+ |+|+...-..|+++.+++.|.+.-|++. -++.+.+..+++++.|.+..|.+....  ...+..+.
T Consensus       112 ~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~--~~tf~~l~  188 (498)
T KOG4237|consen  112 KGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSIC--KGTFQGLA  188 (498)
T ss_pred             hhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhc--cccccchh
Confidence            9999998888776 9999666678999999999999999987 666668999999999999999887532  35667777


Q ss_pred             ceeeccccccc
Q 038485          165 NANLYKLAGFF  175 (184)
Q Consensus       165 ~L~~~~l~~~~  175 (184)
                      +++-+.+..|.
T Consensus       189 ~i~tlhlA~np  199 (498)
T KOG4237|consen  189 AIKTLHLAQNP  199 (498)
T ss_pred             ccchHhhhcCc
Confidence            77776666665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.04  E-value=2.6e-10  Score=82.53  Aligned_cols=109  Identities=30%  Similarity=0.430  Sum_probs=44.4

Q ss_pred             CCCCCCCEEeCCCCcCCCcchhhhhhhhc-CCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhh-c
Q 038485           58 TPFQQLESLDLTDNKIASCVENEGIERLS-RLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKEL-D  135 (184)
Q Consensus        58 ~~l~~L~~L~ls~n~l~~~~p~~~~~~~~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~-~  135 (184)
                      .+...++.|++++|.++... .     ++ .+.+|+.|++++|.++ . .+.+..++.|+.|++++|.++ .+.. .+ .
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie-~-----L~~~l~~L~~L~Ls~N~I~-~-l~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~   85 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIE-N-----LGATLDKLEVLDLSNNQIT-K-LEGLPGLPRLKTLDLSNNRIS-SISE-GLDK   85 (175)
T ss_dssp             ---------------------S-------TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHH
T ss_pred             cccccccccccccccccccc-c-----hhhhhcCCCEEECCCCCCc-c-ccCccChhhhhhcccCCCCCC-cccc-chHH
Confidence            45567899999999998643 2     55 5789999999999998 3 346888999999999999998 6754 34 4


Q ss_pred             CCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485          136 SLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       136 ~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      .+++|++|++++|+|... .....+..+++|..+++.+|.++
T Consensus        86 ~lp~L~~L~L~~N~I~~l-~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDL-NELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             H-TT--EEE-TTS---SC-CCCGGGGG-TT--EEE-TT-GGG
T ss_pred             hCCcCCEEECcCCcCCCh-HHhHHHHcCCCcceeeccCCccc
Confidence            689999999999999874 44567778899999999999886

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.00  E-value=3.5e-11  Score=103.68  Aligned_cols=130  Identities=25%  Similarity=0.372  Sum_probs=88.6

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      .+.++.|.+.+|.++.   --.+.+.++++|+.|++++|++.......    +.++..|+.|++++|.++ .+|..+..+
T Consensus       358 ~~~Lq~LylanN~Ltd---~c~p~l~~~~hLKVLhLsyNrL~~fpas~----~~kle~LeeL~LSGNkL~-~Lp~tva~~  429 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTD---SCFPVLVNFKHLKVLHLSYNRLNSFPASK----LRKLEELEELNLSGNKLT-TLPDTVANL  429 (1081)
T ss_pred             hHHHHHHHHhcCcccc---cchhhhccccceeeeeecccccccCCHHH----HhchHHhHHHhcccchhh-hhhHHHHhh
Confidence            3456777777777765   33334567778888888888776544443    677777888888888877 677777777


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccc
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFF  175 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~  175 (184)
                      ..|++|...+|.+. .+|  .+..++.|+.+|++.|+++........ + .++|+++|++||.
T Consensus       430 ~~L~tL~ahsN~l~-~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~-p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  430 GRLHTLRAHSNQLL-SFP--ELAQLPQLKVLDLSCNNLSEVTLPEAL-P-SPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhHHHhhcCCcee-ech--hhhhcCcceEEecccchhhhhhhhhhC-C-CcccceeeccCCc
Confidence            78888888777776 676  477777788888888877664322222 1 1556666666665

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.99  E-value=6.1e-11  Score=99.15  Aligned_cols=130  Identities=27%  Similarity=0.348  Sum_probs=64.2

Q ss_pred             EEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCc
Q 038485           37 IALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR  116 (184)
Q Consensus        37 ~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~  116 (184)
                      ..|+|++|+|..   +|.+.|.++..|-+||+|+|.+....|.     +..+..|++|.+++|.+...-..++..+.+|+
T Consensus       129 iVLNLS~N~Iet---IPn~lfinLtDLLfLDLS~NrLe~LPPQ-----~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~  200 (1255)
T KOG0444|consen  129 IVLNLSYNNIET---IPNSLFINLTDLLFLDLSNNRLEMLPPQ-----IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLS  200 (1255)
T ss_pred             EEEEcccCcccc---CCchHHHhhHhHhhhccccchhhhcCHH-----HHHHhhhhhhhcCCChhhHHHHhcCccchhhh
Confidence            344444444443   4445555555555555555555433222     45555555555555554322222333334444


Q ss_pred             EEeCCCcccc-CcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          117 SLNLFWNRLE-GSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       117 ~L~l~~n~~~-~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      .|.+++.+-+ ..+|. .+..+.+|+.+|+|+|.+... |..  +-.+++|..++|++|+|+-
T Consensus       201 vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp~v-Pec--ly~l~~LrrLNLS~N~ite  259 (1255)
T KOG0444|consen  201 VLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLPIV-PEC--LYKLRNLRRLNLSGNKITE  259 (1255)
T ss_pred             hhhcccccchhhcCCC-chhhhhhhhhccccccCCCcc-hHH--HhhhhhhheeccCcCceee
Confidence            4444443221 23444 455566667777777776643 322  2245555666666666653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.94  E-value=9.5e-10  Score=86.58  Aligned_cols=15  Identities=40%  Similarity=0.348  Sum_probs=8.4

Q ss_pred             CCceEEEecCCCCCC
Q 038485           33 MSRVIALDLSDTYGG   47 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~   47 (184)
                      ..+++.|++++|.+.
T Consensus        80 ~~~L~~L~l~~~~~~   94 (319)
T cd00116          80 GCGLQELDLSDNALG   94 (319)
T ss_pred             cCceeEEEccCCCCC
Confidence            345566666665554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.94  E-value=3.3e-11  Score=100.73  Aligned_cols=130  Identities=21%  Similarity=0.269  Sum_probs=97.0

Q ss_pred             CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCch-hHHhhc
Q 038485           32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNS-ILSSLT  110 (184)
Q Consensus        32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~-~p~~~~  110 (184)
                      ...+++.|+|++|.+++   +.... ....+|++|++|.|+++. .|+.    +.+++.|+.|++.+|.+... +|++++
T Consensus       243 ~l~~LrrLNLS~N~ite---L~~~~-~~W~~lEtLNlSrNQLt~-LP~a----vcKL~kL~kLy~n~NkL~FeGiPSGIG  313 (1255)
T KOG0444|consen  243 KLRNLRRLNLSGNKITE---LNMTE-GEWENLETLNLSRNQLTV-LPDA----VCKLTKLTKLYANNNKLTFEGIPSGIG  313 (1255)
T ss_pred             hhhhhheeccCcCceee---eeccH-HHHhhhhhhccccchhcc-chHH----HhhhHHHHHHHhccCcccccCCccchh
Confidence            35677888888888876   44433 456778888888888874 5555    77888888888888887643 588888


Q ss_pred             cCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccc
Q 038485          111 HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFF  175 (184)
Q Consensus       111 ~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~  175 (184)
                      .+..|+.+..++|.+. ..|. .+.+|..|+.|.+++|++...|...+.   |..|+.++++.|.
T Consensus       314 KL~~Levf~aanN~LE-lVPE-glcRC~kL~kL~L~~NrLiTLPeaIHl---L~~l~vLDlreNp  373 (1255)
T KOG0444|consen  314 KLIQLEVFHAANNKLE-LVPE-GLCRCVKLQKLKLDHNRLITLPEAIHL---LPDLKVLDLRENP  373 (1255)
T ss_pred             hhhhhHHHHhhccccc-cCch-hhhhhHHHHHhcccccceeechhhhhh---cCCcceeeccCCc
Confidence            8888888888888886 6776 788999999999999998877655666   4445666666654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.93  E-value=1.3e-09  Score=85.74  Aligned_cols=143  Identities=22%  Similarity=0.110  Sum_probs=62.3

Q ss_pred             CceEEEecCCCCCCcccc-ccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchh----HHh
Q 038485           34 SRVIALDLSDTYGGEYWY-LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSI----LSS  108 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~----p~~  108 (184)
                      .++++|++++|.++.... .-...+..+.+|+.|++++|.+.+........++..+++|+.+++++|.+.+..    +..
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            345555555555442000 001122334455555555555543222221222344455566666655554322    223


Q ss_pred             hccCCCCcEEeCCCccccCcccHhhhc-----CCCCCcEEECCCCCCCc--cccCccccccccceeecccccccee
Q 038485          109 LTHLSSLRSLNLFWNRLEGSIDVKELD-----SLRDLEELDIGGNKIDK--FVVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       109 ~~~l~~L~~L~l~~n~~~~~l~~~~~~-----~~~~L~~L~ls~N~l~~--~~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      +..+++|++|++++|.+++.-.. .+.     ..+.|+++++++|.+++  ...-...+..+++|..+++++|.++
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~-~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAA-ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHH-HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            33445566666666555421111 111     12456666666665542  1111122334455566666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.92  E-value=3.6e-10  Score=90.04  Aligned_cols=117  Identities=27%  Similarity=0.363  Sum_probs=76.9

Q ss_pred             eEEEecCCCCCCc--------------------cccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEE
Q 038485           36 VIALDLSDTYGGE--------------------YWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLN   95 (184)
Q Consensus        36 l~~L~l~~n~l~~--------------------~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~   95 (184)
                      ++.++++.|++.+                    ...+++..+..+++|..|++++|.+.. .|..    ++.+..|+.++
T Consensus       390 Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP~e----~~~lv~Lq~Ln  464 (565)
T KOG0472|consen  390 VTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND-LPEE----MGSLVRLQTLN  464 (565)
T ss_pred             eEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh-cchh----hhhhhhhheec
Confidence            6778888888764                    111233345678889999999988774 4555    77888899999


Q ss_pred             CCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccc
Q 038485           96 LSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGT  159 (184)
Q Consensus        96 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~  159 (184)
                      ++.|+|. .+|+.+..+..++.+..++|++. .++...+..+..|.+||+..|.+...||..+.
T Consensus       465 lS~NrFr-~lP~~~y~lq~lEtllas~nqi~-~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgn  526 (565)
T KOG0472|consen  465 LSFNRFR-MLPECLYELQTLETLLASNNQIG-SVDPSGLKNMRNLTTLDLQNNDLQQIPPILGN  526 (565)
T ss_pred             ccccccc-cchHHHhhHHHHHHHHhcccccc-ccChHHhhhhhhcceeccCCCchhhCChhhcc
Confidence            9999887 56666555555555555555654 55554466666666666666666655554444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.89  E-value=2.1e-10  Score=88.49  Aligned_cols=132  Identities=24%  Similarity=0.355  Sum_probs=92.0

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  113 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~  113 (184)
                      +.++++||++|.+..   ++.++ .-.+.++.|++|.|.+.....      +..+++|+.||+++|.++ .+...-..+.
T Consensus       284 q~LtelDLS~N~I~~---iDESv-KL~Pkir~L~lS~N~i~~v~n------La~L~~L~~LDLS~N~Ls-~~~Gwh~KLG  352 (490)
T KOG1259|consen  284 QELTELDLSGNLITQ---IDESV-KLAPKLRRLILSQNRIRTVQN------LAELPQLQLLDLSGNLLA-ECVGWHLKLG  352 (490)
T ss_pred             hhhhhccccccchhh---hhhhh-hhccceeEEeccccceeeehh------hhhcccceEeecccchhH-hhhhhHhhhc
Confidence            457888899988886   55443 567888888998888864322      678888888899888877 4444445667


Q ss_pred             CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeEE
Q 038485          114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWFI  180 (184)
Q Consensus       114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~  180 (184)
                      +.++|.+++|.+. .+.  .++.+.+|..||+++|+|..... ......|.-|+.+.+.+|.+...+
T Consensus       353 NIKtL~La~N~iE-~LS--GL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  353 NIKTLKLAQNKIE-TLS--GLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             CEeeeehhhhhHh-hhh--hhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCccccc
Confidence            7788888888876 553  57788888888888888765422 122234555567777777776543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.89  E-value=2.2e-11  Score=96.75  Aligned_cols=129  Identities=22%  Similarity=0.261  Sum_probs=79.4

Q ss_pred             ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCC
Q 038485           35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS  114 (184)
Q Consensus        35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~  114 (184)
                      ++..+++.+|.+.+   +++.... ++.|+.+|.-.|-+.. .|+.    ++.+.+|..|++.+|.+. ..| .|.++..
T Consensus       161 ~l~~l~~~~n~l~~---l~~~~i~-m~~L~~ld~~~N~L~t-lP~~----lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~  229 (565)
T KOG0472|consen  161 KLSKLDLEGNKLKA---LPENHIA-MKRLKHLDCNSNLLET-LPPE----LGGLESLELLYLRRNKIR-FLP-EFPGCSL  229 (565)
T ss_pred             HHHHhhccccchhh---CCHHHHH-HHHHHhcccchhhhhc-CChh----hcchhhhHHHHhhhcccc-cCC-CCCccHH
Confidence            45566666666665   5544433 6777777777776654 3444    777888888888888776 445 5666666


Q ss_pred             CcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          115 LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       115 L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      |..+.++.|.+. .+|.+-...+.++.+||++.|++...|....   -||+|+.+|++.|.|+.
T Consensus       230 L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~c---lLrsL~rLDlSNN~is~  289 (565)
T KOG0472|consen  230 LKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC---LLRSLERLDLSNNDISS  289 (565)
T ss_pred             HHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHH---HhhhhhhhcccCCcccc
Confidence            666666666665 5555334456666666666666665433222   25556666666666653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=2e-09  Score=64.54  Aligned_cols=60  Identities=35%  Similarity=0.538  Sum_probs=44.9

Q ss_pred             ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCC
Q 038485           35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSF  101 (184)
Q Consensus        35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~  101 (184)
                      ++++|++++|.+..   ++...|..+++|++|++++|.+....+..    |..+++|+++++++|++
T Consensus         2 ~L~~L~l~~n~l~~---i~~~~f~~l~~L~~L~l~~N~l~~i~~~~----f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTE---IPPDSFSNLPNLETLDLSNNNLTSIPPDA----FSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESE---ECTTTTTTGTTESEEEETSSSESEEETTT----TTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCc---cCHHHHcCCCCCCEeEccCCccCccCHHH----HcCCCCCCEEeCcCCcC
Confidence            56778888887776   77777778888888888888877666655    77777777777777753

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=1.5e-09  Score=64.99  Aligned_cols=58  Identities=33%  Similarity=0.456  Sum_probs=25.3

Q ss_pred             CcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCC
Q 038485           91 LKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK  149 (184)
Q Consensus        91 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~  149 (184)
                      |+.+++++|.++...+..|..+++|+++++++|.++ .++.+.|..+++|+++++++|+
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCc
Confidence            344444444444222333444444444444444444 3333344444444444444443

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.78  E-value=1.4e-09  Score=94.02  Aligned_cols=129  Identities=24%  Similarity=0.318  Sum_probs=105.4

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..+++.|+|++|+++.   +|...+.++..|+.|++|+|.++. .|+.    +..+..|++|....|.+. ..| .+..+
T Consensus       382 ~~hLKVLhLsyNrL~~---fpas~~~kle~LeeL~LSGNkL~~-Lp~t----va~~~~L~tL~ahsN~l~-~fP-e~~~l  451 (1081)
T KOG0618|consen  382 FKHLKVLHLSYNRLNS---FPASKLRKLEELEELNLSGNKLTT-LPDT----VANLGRLHTLRAHSNQLL-SFP-ELAQL  451 (1081)
T ss_pred             ccceeeeeeccccccc---CCHHHHhchHHhHHHhcccchhhh-hhHH----HHhhhhhHHHhhcCCcee-ech-hhhhc
Confidence            5689999999999998   999999999999999999999984 5666    889999999999999998 678 78899


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccc
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGF  174 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~  174 (184)
                      +.|+.+|++-|.++ ..-.......++|++||+++|.-..  .+..+++.++++...++..+
T Consensus       452 ~qL~~lDlS~N~L~-~~~l~~~~p~p~LkyLdlSGN~~l~--~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  452 PQLKVLDLSCNNLS-EVTLPEALPSPNLKYLDLSGNTRLV--FDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             CcceEEecccchhh-hhhhhhhCCCcccceeeccCCcccc--cchhhhHHhhhhhheecccC
Confidence            99999999999997 4322122223799999999998533  45577777777776666555

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.69  E-value=5.8e-08  Score=84.72  Aligned_cols=101  Identities=24%  Similarity=0.360  Sum_probs=61.2

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  113 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~  113 (184)
                      ..++.|++++|.+..   ++...+   .+|++|++++|.++. .|..    +  ..+|+.|++++|.+. .+|..+.  .
T Consensus       199 ~~L~~L~Ls~N~Lts---LP~~l~---~nL~~L~Ls~N~Lts-LP~~----l--~~~L~~L~Ls~N~L~-~LP~~l~--s  262 (754)
T PRK15370        199 EQITTLILDNNELKS---LPENLQ---GNIKTLYANSNQLTS-IPAT----L--PDTIQEMELSINRIT-ELPERLP--S  262 (754)
T ss_pred             cCCcEEEecCCCCCc---CChhhc---cCCCEEECCCCcccc-CChh----h--hccccEEECcCCccC-cCChhHh--C
Confidence            456677777777665   554332   467777777777764 3332    2  235677777777766 4555442  4


Q ss_pred             CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccc
Q 038485          114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFV  154 (184)
Q Consensus       114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~  154 (184)
                      +|+.|++++|.++ .+|. .+.  ++|+.|++++|++++.+
T Consensus       263 ~L~~L~Ls~N~L~-~LP~-~l~--~sL~~L~Ls~N~Lt~LP  299 (754)
T PRK15370        263 ALQSLDLFHNKIS-CLPE-NLP--EELRYLSVYDNSIRTLP  299 (754)
T ss_pred             CCCEEECcCCccC-cccc-ccC--CCCcEEECCCCccccCc
Confidence            6777777777776 5654 232  46777777777776543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.65  E-value=1.2e-07  Score=82.70  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=22.9

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCc
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASC   76 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~   76 (184)
                      ..++.|++.+|.++.   ++.    ..++|++|++++|+++..
T Consensus       222 ~~L~~L~L~~N~Lt~---LP~----lp~~Lk~LdLs~N~LtsL  257 (788)
T PRK15387        222 AHITTLVIPDNNLTS---LPA----LPPELRTLEVSGNQLTSL  257 (788)
T ss_pred             cCCCEEEccCCcCCC---CCC----CCCCCcEEEecCCccCcc
Confidence            356677777777665   432    246777777777777643

>PLN03210 Resistant to P

Probab=98.63  E-value=2.2e-07  Score=85.08  Aligned_cols=107  Identities=21%  Similarity=0.246  Sum_probs=68.0

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      +.++++|++.++.+..   ++.. +..+++|+.++++++......|.     +..+++|+.|++.+|.....+|..+..+
T Consensus       610 ~~~L~~L~L~~s~l~~---L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L  680 (1153)
T PLN03210        610 PENLVKLQMQGSKLEK---LWDG-VHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYL  680 (1153)
T ss_pred             ccCCcEEECcCccccc---cccc-cccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhcc
Confidence            3456677777776665   3333 25677777777777654444554     5677777777777766555667777777


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCC
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI  150 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l  150 (184)
                      .+|+.|++++|...+.+|. .+ .+++|+.|++++|..
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~-~i-~l~sL~~L~Lsgc~~  716 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPT-GI-NLKSLYRLNLSGCSR  716 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCC-cC-CCCCCCEEeCCCCCC
Confidence            7777777777643335664 22 566666666666543

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.57  E-value=5.8e-08  Score=84.70  Aligned_cols=78  Identities=24%  Similarity=0.204  Sum_probs=41.5

Q ss_pred             CCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeec
Q 038485           90 NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLY  169 (184)
Q Consensus        90 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~  169 (184)
                      .|+.|++++|.+. .+|..   ..+|+.|++++|.++ .+|. .   ...|+.|++++|+++.. |  ..+..+.+|..+
T Consensus       383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~-l---~~~L~~L~Ls~NqLt~L-P--~sl~~L~~L~~L  450 (788)
T PRK15387        383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPM-L---PSGLLSLSVYRNQLTRL-P--ESLIHLSSETTV  450 (788)
T ss_pred             ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCc-c---hhhhhhhhhccCccccc-C--hHHhhccCCCeE
Confidence            3455555555554 23321   134555666666655 4443 1   23455566666666543 2  123356667777


Q ss_pred             cccccceeeE
Q 038485          170 KLAGFFAIWF  179 (184)
Q Consensus       170 ~l~~~~~~~~  179 (184)
                      ++++|.+++.
T Consensus       451 dLs~N~Ls~~  460 (788)
T PRK15387        451 NLEGNPLSER  460 (788)
T ss_pred             ECCCCCCCch
Confidence            7788877653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.56  E-value=5.3e-07  Score=78.81  Aligned_cols=121  Identities=21%  Similarity=0.221  Sum_probs=90.0

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..+.++|+++++.++.   +|...   .+.++.|++++|.++.. |..    +  .++|+.|++++|.+. .+|..+.  
T Consensus       177 ~~~~~~L~L~~~~Lts---LP~~I---p~~L~~L~Ls~N~LtsL-P~~----l--~~nL~~L~Ls~N~Lt-sLP~~l~--  240 (754)
T PRK15370        177 KNNKTELRLKILGLTT---IPACI---PEQITTLILDNNELKSL-PEN----L--QGNIKTLYANSNQLT-SIPATLP--  240 (754)
T ss_pred             ccCceEEEeCCCCcCc---CCccc---ccCCcEEEecCCCCCcC-Chh----h--ccCCCEEECCCCccc-cCChhhh--
Confidence            3567899999999987   66543   25799999999999864 443    3  258999999999998 5676543  


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      .+|+.|++++|.+. .+|. .+.  .+|+.|++++|++...+...  .   .+|..+++++|.++.
T Consensus       241 ~~L~~L~Ls~N~L~-~LP~-~l~--s~L~~L~Ls~N~L~~LP~~l--~---~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        241 DTIQEMELSINRIT-ELPE-RLP--SALQSLDLFHNKISCLPENL--P---EELRYLSVYDNSIRT  297 (754)
T ss_pred             ccccEEECcCCccC-cCCh-hHh--CCCCEEECcCCccCcccccc--C---CCCcEEECCCCcccc
Confidence            47999999999998 8886 443  58999999999999754322  1   245555666666653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.52  E-value=7e-09  Score=85.84  Aligned_cols=128  Identities=31%  Similarity=0.346  Sum_probs=88.0

Q ss_pred             CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc
Q 038485           32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH  111 (184)
Q Consensus        32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~  111 (184)
                      ....++.++|+.|++..   ++... . ..-|+.|.+++|++.. .|..    ++.+++|..++.+.|.+. .+|..++.
T Consensus       119 ~L~~lt~l~ls~NqlS~---lp~~l-C-~lpLkvli~sNNkl~~-lp~~----ig~~~tl~~ld~s~nei~-slpsql~~  187 (722)
T KOG0532|consen  119 NLEALTFLDLSSNQLSH---LPDGL-C-DLPLKVLIVSNNKLTS-LPEE----IGLLPTLAHLDVSKNEIQ-SLPSQLGY  187 (722)
T ss_pred             hhhHHHHhhhccchhhc---CChhh-h-cCcceeEEEecCcccc-CCcc----cccchhHHHhhhhhhhhh-hchHHhhh
Confidence            35677888888888885   66553 2 3447888888888874 4444    677778888888888877 66777777


Q ss_pred             CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccce
Q 038485          112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFA  176 (184)
Q Consensus       112 l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~  176 (184)
                      +.+|+.+.+..|.+. .+|. .+..++ |..||+++|++...+   ..|..+++|.++-|..|.+
T Consensus       188 l~slr~l~vrRn~l~-~lp~-El~~Lp-Li~lDfScNkis~iP---v~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  188 LTSLRDLNVRRNHLE-DLPE-ELCSLP-LIRLDFSCNKISYLP---VDFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             HHHHHHHHHhhhhhh-hCCH-HHhCCc-eeeeecccCceeecc---hhhhhhhhheeeeeccCCC
Confidence            777777777777776 6665 455333 677777777777543   3445666666666666654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.52  E-value=2.2e-08  Score=77.51  Aligned_cols=109  Identities=34%  Similarity=0.451  Sum_probs=89.1

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      .+.++.|++++|++..   +..  +..+.+|+.||+|+|.++....=     -.++-+.+.|.++.|.+.  ..++++.+
T Consensus       306 ~Pkir~L~lS~N~i~~---v~n--La~L~~L~~LDLS~N~Ls~~~Gw-----h~KLGNIKtL~La~N~iE--~LSGL~KL  373 (490)
T KOG1259|consen  306 APKLRRLILSQNRIRT---VQN--LAELPQLQLLDLSGNLLAECVGW-----HLKLGNIKTLKLAQNKIE--TLSGLRKL  373 (490)
T ss_pred             ccceeEEeccccceee---ehh--hhhcccceEeecccchhHhhhhh-----HhhhcCEeeeehhhhhHh--hhhhhHhh
Confidence            5789999999999985   333  57789999999999999865332     246778899999999986  35678888


Q ss_pred             CCCcEEeCCCccccCccc-HhhhcCCCCCcEEECCCCCCCccc
Q 038485          113 SSLRSLNLFWNRLEGSID-VKELDSLRDLEELDIGGNKIDKFV  154 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~-~~~~~~~~~L~~L~ls~N~l~~~~  154 (184)
                      .+|..||+++|+|. .+. ...++++++|+++.+.+|++.+.+
T Consensus       374 YSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  374 YSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhheeccccccchh-hHHHhcccccccHHHHHhhcCCCccccc
Confidence            99999999999997 443 235889999999999999998753

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.50  E-value=5.9e-08  Score=77.36  Aligned_cols=94  Identities=23%  Similarity=0.366  Sum_probs=70.4

Q ss_pred             cCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHh
Q 038485           53 NASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVK  132 (184)
Q Consensus        53 ~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~  132 (184)
                      |...|..+++|+.+++++|.++...+..    |.++.++++|++.+|.+.......|.++..|++|++.+|+|+ .+..+
T Consensus       266 P~~cf~~L~~L~~lnlsnN~i~~i~~~a----Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~  340 (498)
T KOG4237|consen  266 PAKCFKKLPNLRKLNLSNNKITRIEDGA----FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPG  340 (498)
T ss_pred             hHHHHhhcccceEeccCCCccchhhhhh----hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE-EEecc
Confidence            3344777888888888888888777666    778888888888888887555667777888888888888887 44444


Q ss_pred             hhcCCCCCcEEECCCCCCC
Q 038485          133 ELDSLRDLEELDIGGNKID  151 (184)
Q Consensus       133 ~~~~~~~L~~L~ls~N~l~  151 (184)
                      .|....+|..|++-.|++.
T Consensus       341 aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  341 AFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             cccccceeeeeehccCccc
Confidence            7777888888887777653

>PLN03210 Resistant to P

Probab=98.45  E-value=1.6e-06  Score=79.65  Aligned_cols=127  Identities=17%  Similarity=0.188  Sum_probs=90.3

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      +..++.|++.++.+..   +|.. | ...+|+.|+++++.+... +..    +..+++|+.++++++.....+| .+..+
T Consensus       588 p~~Lr~L~~~~~~l~~---lP~~-f-~~~~L~~L~L~~s~l~~L-~~~----~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l  656 (1153)
T PLN03210        588 PPKLRLLRWDKYPLRC---MPSN-F-RPENLVKLQMQGSKLEKL-WDG----VHSLTGLRNIDLRGSKNLKEIP-DLSMA  656 (1153)
T ss_pred             CcccEEEEecCCCCCC---CCCc-C-CccCCcEEECcCcccccc-ccc----cccCCCCCEEECCCCCCcCcCC-ccccC
Confidence            3457777777777765   5543 2 468899999999998754 444    6789999999999876443555 47788


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccc
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGF  174 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~  174 (184)
                      ++|+.|++++|.....+|. .++.+++|+.|++++|.--+..|...   .+++|..++++++
T Consensus       657 ~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc  714 (1153)
T PLN03210        657 TNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGC  714 (1153)
T ss_pred             CcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCC
Confidence            9999999999865458887 79999999999999865333344332   2444444444443

syringae 6; Provisional

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.31  E-value=1.3e-06  Score=64.00  Aligned_cols=127  Identities=24%  Similarity=0.219  Sum_probs=85.1

Q ss_pred             ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCC
Q 038485           35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS  114 (184)
Q Consensus        35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~  114 (184)
                      +-+++++.+..+.....    .-.-..+...+|+++|.+.... .     |..++.|.+|.+.+|+|+...|.--..+++
T Consensus        20 ~e~e~~LR~lkip~ien----lg~~~d~~d~iDLtdNdl~~l~-~-----lp~l~rL~tLll~nNrIt~I~p~L~~~~p~   89 (233)
T KOG1644|consen   20 RERELDLRGLKIPVIEN----LGATLDQFDAIDLTDNDLRKLD-N-----LPHLPRLHTLLLNNNRITRIDPDLDTFLPN   89 (233)
T ss_pred             cccccccccccccchhh----ccccccccceecccccchhhcc-c-----CCCccccceEEecCCcceeeccchhhhccc
Confidence            34677888887764211    1133467778899999886432 2     788889999999999998666655556688


Q ss_pred             CcEEeCCCccccCccc-HhhhcCCCCCcEEECCCCCCCccccC-ccccccccceeecccc
Q 038485          115 LRSLNLFWNRLEGSID-VKELDSLRDLEELDIGGNKIDKFVVS-KGTTNTIKNANLYKLA  172 (184)
Q Consensus       115 L~~L~l~~n~~~~~l~-~~~~~~~~~L~~L~ls~N~l~~~~~~-~~~~~~l~~L~~~~l~  172 (184)
                      |..|.+.+|.+. ++. ...+..+++|+.|.+-+|+++...-= ...+-.+.+|..+|..
T Consensus        90 l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen   90 LKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             cceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence            999999999887 332 22366788899999989988764321 1223344444544433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.31  E-value=7e-09  Score=88.11  Aligned_cols=128  Identities=23%  Similarity=0.231  Sum_probs=91.8

Q ss_pred             ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCC
Q 038485           35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS  114 (184)
Q Consensus        35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~  114 (184)
                      .+...+.++|.+..   ++ ..+.-++.++.|+++.|++++..  .    +..+++|+.||+++|.+. .+|..-..-..
T Consensus       165 ~L~~a~fsyN~L~~---mD-~SLqll~ale~LnLshNk~~~v~--~----Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~  233 (1096)
T KOG1859|consen  165 KLATASFSYNRLVL---MD-ESLQLLPALESLNLSHNKFTKVD--N----LRRLPKLKHLDLSYNCLR-HVPQLSMVGCK  233 (1096)
T ss_pred             hHhhhhcchhhHHh---HH-HHHHHHHHhhhhccchhhhhhhH--H----HHhcccccccccccchhc-cccccchhhhh
Confidence            35566677777663   33 33466788999999999988654  2    788999999999999987 44432111134


Q ss_pred             CcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485          115 LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       115 L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      |+.|.+++|.++ ++.  .+.++.+|+.||+++|-+.+. .....+-.|..|..+.|-||.+.
T Consensus       234 L~~L~lrnN~l~-tL~--gie~LksL~~LDlsyNll~~h-seL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  234 LQLLNLRNNALT-TLR--GIENLKSLYGLDLSYNLLSEH-SELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             heeeeecccHHH-hhh--hHHhhhhhhccchhHhhhhcc-hhhhHHHHHHHHHHHhhcCCccc
Confidence            888999999987 664  588889999999999988763 22333445677778888888764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.30  E-value=4e-07  Score=80.83  Aligned_cols=108  Identities=26%  Similarity=0.259  Sum_probs=85.5

Q ss_pred             CCceEEEecCCCC--CCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhc
Q 038485           33 MSRVIALDLSDTY--GGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT  110 (184)
Q Consensus        33 ~~~l~~L~l~~n~--l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~  110 (184)
                      .+.+++|-+.+|.  +..   ++...|..++.|+.||+++|.--+..|..    ++.+-+|++|++++..+. .+|..++
T Consensus       544 ~~~L~tLll~~n~~~l~~---is~~ff~~m~~LrVLDLs~~~~l~~LP~~----I~~Li~LryL~L~~t~I~-~LP~~l~  615 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLE---ISGEFFRSLPLLRVLDLSGNSSLSKLPSS----IGELVHLRYLDLSDTGIS-HLPSGLG  615 (889)
T ss_pred             CCccceEEEeecchhhhh---cCHHHHhhCcceEEEECCCCCccCcCChH----HhhhhhhhcccccCCCcc-ccchHHH
Confidence            3468888888886  343   55666888999999999987776778887    888999999999999988 8899999


Q ss_pred             cCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCC
Q 038485          111 HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK  149 (184)
Q Consensus       111 ~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~  149 (184)
                      .+.+|.+|++..+.....++. ....+++|++|.+..-.
T Consensus       616 ~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  616 NLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA  653 (889)
T ss_pred             HHHhhheeccccccccccccc-hhhhcccccEEEeeccc
Confidence            999999999988765434443 66678999999876654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.28  E-value=4.3e-07  Score=73.91  Aligned_cols=128  Identities=30%  Similarity=0.414  Sum_probs=78.7

Q ss_pred             ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhh-----
Q 038485           35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-----  109 (184)
Q Consensus        35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~-----  109 (184)
                      ++++|++++|.+..   ++.. ...+++|+.|++++|++....+.     ...++.|..+++++|.+. .+|...     
T Consensus       141 nL~~L~l~~N~i~~---l~~~-~~~l~~L~~L~l~~N~l~~l~~~-----~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~  210 (394)
T COG4886         141 NLKELDLSDNKIES---LPSP-LRNLPNLKNLDLSFNDLSDLPKL-----LSNLSNLNNLDLSGNKIS-DLPPEIELLSA  210 (394)
T ss_pred             hcccccccccchhh---hhhh-hhccccccccccCCchhhhhhhh-----hhhhhhhhheeccCCccc-cCchhhhhhhh
Confidence            78888888888876   4322 36778888888888888754432     235666666677776666 344433     


Q ss_pred             ------------------ccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccc
Q 038485          110 ------------------THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKL  171 (184)
Q Consensus       110 ------------------~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l  171 (184)
                                        ..+..+..+.+.+|++. .++. .++.+++++.+++++|.++....    +..+.++..+++
T Consensus       211 L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~-~~~~l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~  284 (394)
T COG4886         211 LEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPE-SIGNLSNLETLDLSNNQISSISS----LGSLTNLRELDL  284 (394)
T ss_pred             hhhhhhcCCcceecchhhhhcccccccccCCceee-eccc-hhccccccceecccccccccccc----ccccCccCEEec
Confidence                              33334444444444443 2222 46666677777777777776433    445666677777


Q ss_pred             cccceee
Q 038485          172 AGFFAIW  178 (184)
Q Consensus       172 ~~~~~~~  178 (184)
                      +++.+++
T Consensus       285 s~n~~~~  291 (394)
T COG4886         285 SGNSLSN  291 (394)
T ss_pred             cCccccc
Confidence            7766654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=1.3e-07  Score=76.14  Aligned_cols=117  Identities=26%  Similarity=0.345  Sum_probs=67.7

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHh-hcc
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSS-LTH  111 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~  111 (184)
                      ..+++.|||++|-+.. |.........+++|+.|+++.|.+........   -..+++|+.|.++.|.+++..... ...
T Consensus       145 ~~~v~~LdLS~NL~~n-w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHN-WFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---TLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             CCcceeecchhhhHHh-HHHHHHHHHhcccchhcccccccccCCccccc---hhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            4567778888776654 22223444667778888888777753322210   124567777777777777654433 335


Q ss_pred             CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccc
Q 038485          112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFV  154 (184)
Q Consensus       112 l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~  154 (184)
                      ++++..|++..|... .........+..|+.|++++|++.+++
T Consensus       221 fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~  262 (505)
T KOG3207|consen  221 FPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFD  262 (505)
T ss_pred             CCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccc
Confidence            567777777766422 111112334556667777777666543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.20  E-value=1.6e-06  Score=70.57  Aligned_cols=104  Identities=35%  Similarity=0.494  Sum_probs=68.4

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCC-CCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQ-QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~-~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++.|++.+|.+..   +++.. ..+. +|+.|++++|.+.... ..    +..++.|+.|+++.|.+. ..|...+..
T Consensus       116 ~~l~~L~l~~n~i~~---i~~~~-~~~~~nL~~L~l~~N~i~~l~-~~----~~~l~~L~~L~l~~N~l~-~l~~~~~~~  185 (394)
T COG4886         116 TNLTSLDLDNNNITD---IPPLI-GLLKSNLKELDLSDNKIESLP-SP----LRNLPNLKNLDLSFNDLS-DLPKLLSNL  185 (394)
T ss_pred             cceeEEecCCccccc---Ccccc-ccchhhcccccccccchhhhh-hh----hhccccccccccCCchhh-hhhhhhhhh
Confidence            346777777777775   44432 3342 7777788877776432 22    567777788888887777 455555566


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCC
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK  149 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~  149 (184)
                      +.|..+++++|.++ .+|. .......|+.+.++.|+
T Consensus       186 ~~L~~L~ls~N~i~-~l~~-~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         186 SNLNNLDLSGNKIS-DLPP-EIELLSALEELDLSNNS  220 (394)
T ss_pred             hhhhheeccCCccc-cCch-hhhhhhhhhhhhhcCCc
Confidence            77777778777777 6665 44455557777777774

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.17  E-value=3e-06  Score=47.12  Aligned_cols=38  Identities=32%  Similarity=0.518  Sum_probs=24.8

Q ss_pred             CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcc
Q 038485          114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF  153 (184)
Q Consensus       114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~  153 (184)
                      +|++|++++|+++ .++. .+..+++|+.|++++|++++.
T Consensus         2 ~L~~L~l~~N~i~-~l~~-~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPP-ELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-S-SHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCc-ccCc-hHhCCCCCCEEEecCCCCCCC
Confidence            5667777777776 5664 577777777777777777653

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.17  E-value=3.9e-07  Score=75.79  Aligned_cols=106  Identities=23%  Similarity=0.345  Sum_probs=92.6

Q ss_pred             ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCC
Q 038485           35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS  114 (184)
Q Consensus        35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~  114 (184)
                      -+..|.+++|.++.   ++... +....|..||.+.|.+.. .|..    +..+.+|..+.+.+|.+. .+|+.+.. -.
T Consensus       144 pLkvli~sNNkl~~---lp~~i-g~~~tl~~ld~s~nei~s-lpsq----l~~l~slr~l~vrRn~l~-~lp~El~~-Lp  212 (722)
T KOG0532|consen  144 PLKVLIVSNNKLTS---LPEEI-GLLPTLAHLDVSKNEIQS-LPSQ----LGYLTSLRDLNVRRNHLE-DLPEELCS-LP  212 (722)
T ss_pred             cceeEEEecCcccc---CCccc-ccchhHHHhhhhhhhhhh-chHH----hhhHHHHHHHHHhhhhhh-hCCHHHhC-Cc
Confidence            47889999999987   77776 478899999999999985 4444    889999999999999998 77888884 45


Q ss_pred             CcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcc
Q 038485          115 LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF  153 (184)
Q Consensus       115 L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~  153 (184)
                      |..||++.|+++ .+|. .|.+|+.|++|-|.+|++...
T Consensus       213 Li~lDfScNkis-~iPv-~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  213 LIRLDFSCNKIS-YLPV-DFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             eeeeecccCcee-ecch-hhhhhhhheeeeeccCCCCCC
Confidence            999999999998 9998 899999999999999999864

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.05  E-value=5e-07  Score=62.48  Aligned_cols=111  Identities=23%  Similarity=0.234  Sum_probs=73.2

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ...++.++|++|.+..   ++...-..++.++.+++++|.++. .|.+    +..++.|+.++++.|.+. ..|..+..+
T Consensus        52 ~~el~~i~ls~N~fk~---fp~kft~kf~t~t~lNl~~neisd-vPeE----~Aam~aLr~lNl~~N~l~-~~p~vi~~L  122 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKK---FPKKFTIKFPTATTLNLANNEISD-VPEE----LAAMPALRSLNLRFNPLN-AEPRVIAPL  122 (177)
T ss_pred             CceEEEEecccchhhh---CCHHHhhccchhhhhhcchhhhhh-chHH----HhhhHHhhhcccccCccc-cchHHHHHH
Confidence            3456777788887776   666555566677778888887764 4555    777778888888887777 567766667


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccc
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFV  154 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~  154 (184)
                      .++-.|+..+|.+. .++-+ +-.....-..+++.+++.+.-
T Consensus       123 ~~l~~Lds~~na~~-eid~d-l~~s~~~al~~lgnepl~~~~  162 (177)
T KOG4579|consen  123 IKLDMLDSPENARA-EIDVD-LFYSSLPALIKLGNEPLGDET  162 (177)
T ss_pred             HhHHHhcCCCCccc-cCcHH-HhccccHHHHHhcCCcccccC
Confidence            77777777777776 67663 222222333344556665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.97  E-value=9.8e-07  Score=61.05  Aligned_cols=84  Identities=26%  Similarity=0.337  Sum_probs=43.3

Q ss_pred             CCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCC
Q 038485           61 QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDL  140 (184)
Q Consensus        61 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L  140 (184)
                      ..|+..++++|.+.+..+.-    -.+++.++.+++++|.++ .+|..+..++.|+.++++.|.+. ..|. .+..+.++
T Consensus        53 ~el~~i~ls~N~fk~fp~kf----t~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~-vi~~L~~l  125 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKF----TIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPR-VIAPLIKL  125 (177)
T ss_pred             ceEEEEecccchhhhCCHHH----hhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchH-HHHHHHhH
Confidence            44555556666555332221    123445555556666555 44555555555666666655554 4443 44445555


Q ss_pred             cEEECCCCCCC
Q 038485          141 EELDIGGNKID  151 (184)
Q Consensus       141 ~~L~ls~N~l~  151 (184)
                      ..|+.-.|.+.
T Consensus       126 ~~Lds~~na~~  136 (177)
T KOG4579|consen  126 DMLDSPENARA  136 (177)
T ss_pred             HHhcCCCCccc
Confidence            55555555444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=1.4e-06  Score=70.34  Aligned_cols=75  Identities=17%  Similarity=0.134  Sum_probs=40.6

Q ss_pred             CCCCceeEEecC-CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCC
Q 038485           20 DCCQWERVECSN-TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSG   98 (184)
Q Consensus        20 ~~c~~~gv~c~~-~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~   98 (184)
                      -+.+|..|.-.. +.++++.|+++.|.+.-.+  ....-..+.+|+.|.++.|.++...-..   -...+|+|+.|++..
T Consensus       157 L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~--~s~~~~~l~~lK~L~l~~CGls~k~V~~---~~~~fPsl~~L~L~~  231 (505)
T KOG3207|consen  157 LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI--SSNTTLLLSHLKQLVLNSCGLSWKDVQW---ILLTFPSLEVLYLEA  231 (505)
T ss_pred             hHHhHHHHHHHHHhcccchhcccccccccCCc--cccchhhhhhhheEEeccCCCCHHHHHH---HHHhCCcHHHhhhhc
Confidence            344566665432 4678888888888776411  1111134566777777777665322111   133455555555555


Q ss_pred             C
Q 038485           99 N   99 (184)
Q Consensus        99 n   99 (184)
                      |
T Consensus       232 N  232 (505)
T KOG3207|consen  232 N  232 (505)
T ss_pred             c
Confidence            5

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.95  E-value=1e-05  Score=72.01  Aligned_cols=111  Identities=23%  Similarity=0.231  Sum_probs=87.1

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCc--CCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNK--IASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH  111 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~--l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~  111 (184)
                      ..++.+.+-+|.+..   .+..  ...+.|++|-+..|.  +......-    |..++.|..||+++|.--+.+|+.++.
T Consensus       523 ~~~rr~s~~~~~~~~---~~~~--~~~~~L~tLll~~n~~~l~~is~~f----f~~m~~LrVLDLs~~~~l~~LP~~I~~  593 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEH---IAGS--SENPKLRTLLLQRNSDWLLEISGEF----FRSLPLLRVLDLSGNSSLSKLPSSIGE  593 (889)
T ss_pred             hheeEEEEeccchhh---ccCC--CCCCccceEEEeecchhhhhcCHHH----HhhCcceEEEECCCCCccCcCChHHhh
Confidence            355666777776654   3333  344579899888885  44333333    778999999999998877799999999


Q ss_pred             CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcccc
Q 038485          112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVV  155 (184)
Q Consensus       112 l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~  155 (184)
                      +-+|++|+++++.++ .+|. .++++..|.+|++..+.....++
T Consensus       594 Li~LryL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~l~~~~  635 (889)
T KOG4658|consen  594 LVHLRYLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVTGRLESIP  635 (889)
T ss_pred             hhhhhcccccCCCcc-ccch-HHHHHHhhheecccccccccccc
Confidence            999999999999998 8998 89999999999999877554444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.94  E-value=1.3e-05  Score=44.50  Aligned_cols=36  Identities=36%  Similarity=0.520  Sum_probs=20.7

Q ss_pred             CCcEEECCCCCCCchhHHhhccCCCCcEEeCCCcccc
Q 038485           90 NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLE  126 (184)
Q Consensus        90 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~  126 (184)
                      +|++|++++|.++ .+|+.+..+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4556666666666 34445666666666666666665

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.94  E-value=2.6e-06  Score=69.99  Aligned_cols=106  Identities=42%  Similarity=0.553  Sum_probs=77.8

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ...+..|++.+|.+..   +... +..+.+|++|++++|.|+...+      +..++.|+.|++.+|.+.  ..+.+..+
T Consensus        94 ~~~l~~l~l~~n~i~~---i~~~-l~~~~~L~~L~ls~N~I~~i~~------l~~l~~L~~L~l~~N~i~--~~~~~~~l  161 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEK---IENL-LSSLVNLQVLDLSFNKITKLEG------LSTLTLLKELNLSGNLIS--DISGLESL  161 (414)
T ss_pred             ccceeeeeccccchhh---cccc-hhhhhcchheeccccccccccc------hhhccchhhheeccCcch--hccCCccc
Confidence            4677888888888876   3321 3668888888888888887655      567777888888888886  24456667


Q ss_pred             CCCcEEeCCCccccCcccHhh-hcCCCCCcEEECCCCCCCc
Q 038485          113 SSLRSLNLFWNRLEGSIDVKE-LDSLRDLEELDIGGNKIDK  152 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~-~~~~~~L~~L~ls~N~l~~  152 (184)
                      ..|+.+++++|.++ .++. . ...+.+++.+++..|.+..
T Consensus       162 ~~L~~l~l~~n~i~-~ie~-~~~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  162 KSLKLLDLSYNRIV-DIEN-DELSELISLEELDLGGNSIRE  200 (414)
T ss_pred             hhhhcccCCcchhh-hhhh-hhhhhccchHHHhccCCchhc
Confidence            88888888888887 5553 2 4677778888888887654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.72  E-value=7.8e-06  Score=67.20  Aligned_cols=107  Identities=35%  Similarity=0.421  Sum_probs=58.7

Q ss_pred             CCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCC
Q 038485           58 TPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSL  137 (184)
Q Consensus        58 ~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~  137 (184)
                      ..+.+++.+++.+|.+.+....     +..+++|+.|++++|.|+.  ...+..+..|+.|++++|.++ .+.  .+..+
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L~l~~N~i~-~~~--~~~~l  161 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSFNKITK--LEGLSTLTLLKELNLSGNLIS-DIS--GLESL  161 (414)
T ss_pred             ccccceeeeeccccchhhcccc-----hhhhhcchheecccccccc--ccchhhccchhhheeccCcch-hcc--CCccc
Confidence            4556666666666666654331     3456666666666666652  233444555666666666665 443  35556


Q ss_pred             CCCcEEECCCCCCCccccCccccccccceeeccccccce
Q 038485          138 RDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFA  176 (184)
Q Consensus       138 ~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~  176 (184)
                      +.|+.+++++|.+....+. . ...+.++..+.+.+|.+
T Consensus       162 ~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  162 KSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSI  198 (414)
T ss_pred             hhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCch
Confidence            6666666666666653331 1 12333444444444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.66  E-value=9e-05  Score=54.50  Aligned_cols=103  Identities=28%  Similarity=0.262  Sum_probs=78.8

Q ss_pred             ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchh-HHhhccCC
Q 038485           35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSI-LSSLTHLS  113 (184)
Q Consensus        35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~-p~~~~~l~  113 (184)
                      ....+||+.|.+..     ...|..++.|++|.+++|.|+...|.-    -..++.|..|.+.+|.+.... ...+..++
T Consensus        43 ~~d~iDLtdNdl~~-----l~~lp~l~rL~tLll~nNrIt~I~p~L----~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p  113 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK-----LDNLPHLPRLHTLLLNNNRITRIDPDL----DTFLPNLKTLILTNNSIQELGDLDPLASCP  113 (233)
T ss_pred             ccceecccccchhh-----cccCCCccccceEEecCCcceeeccch----hhhccccceEEecCcchhhhhhcchhccCC
Confidence            45678999998875     334677899999999999999888774    345788999999999987322 34577889


Q ss_pred             CCcEEeCCCccccCcccH---hhhcCCCCCcEEECCC
Q 038485          114 SLRSLNLFWNRLEGSIDV---KELDSLRDLEELDIGG  147 (184)
Q Consensus       114 ~L~~L~l~~n~~~~~l~~---~~~~~~~~L~~L~ls~  147 (184)
                      +|+.|.+-+|.++. ...   =.+..+++|+.||...
T Consensus       114 ~L~~Ltll~Npv~~-k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  114 KLEYLTLLGNPVEH-KKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ccceeeecCCchhc-ccCceeEEEEecCcceEeehhh
Confidence            99999999999872 211   1366788999998653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.65  E-value=2.1e-05  Score=62.06  Aligned_cols=94  Identities=23%  Similarity=0.182  Sum_probs=38.6

Q ss_pred             CCceEEEecCCCCCCcccc-ccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCch----hHH
Q 038485           33 MSRVIALDLSDTYGGEYWY-LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNS----ILS  107 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~----~p~  107 (184)
                      ...++++....|.+...+. .-...|+..+.|+.+.+..|.|....-..+..++...++|+.|++..|.++..    +..
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            3455555555555543100 11122333344555555444443221111122244445555555555544421    122


Q ss_pred             hhccCCCCcEEeCCCcccc
Q 038485          108 SLTHLSSLRSLNLFWNRLE  126 (184)
Q Consensus       108 ~~~~l~~L~~L~l~~n~~~  126 (184)
                      .+..++.|+.+++++|.++
T Consensus       236 aL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             Hhcccchheeecccccccc
Confidence            2333444555555555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.50  E-value=5.2e-06  Score=71.18  Aligned_cols=106  Identities=22%  Similarity=0.304  Sum_probs=77.8

Q ss_pred             CCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCc
Q 038485           62 QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLE  141 (184)
Q Consensus        62 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~  141 (184)
                      .|.+.+.+.|.+.. ...+    +.-++.++.|+|++|.++.  ...+..++.|++||+++|.+. .+|.-.... ..|.
T Consensus       165 ~L~~a~fsyN~L~~-mD~S----Lqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~g-c~L~  235 (1096)
T KOG1859|consen  165 KLATASFSYNRLVL-MDES----LQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVG-CKLQ  235 (1096)
T ss_pred             hHhhhhcchhhHHh-HHHH----HHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhc-cccccchhh-hhhe
Confidence            46666777777763 2333    6778899999999999873  347888999999999999997 777412223 3499


Q ss_pred             EEECCCCCCCccccCccccccccceeeccccccceeeEE
Q 038485          142 ELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWFI  180 (184)
Q Consensus       142 ~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~  180 (184)
                      .|.+++|.++..    .-...|++|..+|++-|.|.++.
T Consensus       236 ~L~lrnN~l~tL----~gie~LksL~~LDlsyNll~~hs  270 (1096)
T KOG1859|consen  236 LLNLRNNALTTL----RGIENLKSLYGLDLSYNLLSEHS  270 (1096)
T ss_pred             eeeecccHHHhh----hhHHhhhhhhccchhHhhhhcch
Confidence            999999988753    22345788888888888887664

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=3.8e-05  Score=59.73  Aligned_cols=86  Identities=26%  Similarity=0.375  Sum_probs=53.1

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhH-Hhhcc
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSIL-SSLTH  111 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~  111 (184)
                      ..+++++||.+|.+.. |.-...+...+++|+.|+++.|++...+...    -....+|+.+-+.+..+.+... ..+..
T Consensus        70 ~~~v~elDL~~N~iSd-WseI~~ile~lP~l~~LNls~N~L~s~I~~l----p~p~~nl~~lVLNgT~L~w~~~~s~l~~  144 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISD-WSEIGAILEQLPALTTLNLSCNSLSSDIKSL----PLPLKNLRVLVLNGTGLSWTQSTSSLDD  144 (418)
T ss_pred             hhhhhhhhcccchhcc-HHHHHHHHhcCccceEeeccCCcCCCccccC----cccccceEEEEEcCCCCChhhhhhhhhc
Confidence            3456777888887764 3333455577788888888888776544331    1345567777777776665433 23345


Q ss_pred             CCCCcEEeCCCc
Q 038485          112 LSSLRSLNLFWN  123 (184)
Q Consensus       112 l~~L~~L~l~~n  123 (184)
                      ++.++.+.++.|
T Consensus       145 lP~vtelHmS~N  156 (418)
T KOG2982|consen  145 LPKVTELHMSDN  156 (418)
T ss_pred             chhhhhhhhccc
Confidence            566666666666

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.39  E-value=0.00012  Score=63.73  Aligned_cols=85  Identities=25%  Similarity=0.342  Sum_probs=38.6

Q ss_pred             CCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCC
Q 038485           59 PFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLR  138 (184)
Q Consensus        59 ~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~  138 (184)
                      -+|.|+.|.+++-.+....-..   .+..+|+|..||+++.+++..  .+++.+.+|+.|.+.+=.+........+-.++
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~---lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~  220 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQ---LCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLK  220 (699)
T ss_pred             hCcccceEEecCceecchhHHH---HhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhccc
Confidence            3455555555554443221111   144555555555555555422  44445555555555444443212222344455


Q ss_pred             CCcEEECCCC
Q 038485          139 DLEELDIGGN  148 (184)
Q Consensus       139 ~L~~L~ls~N  148 (184)
                      +|++||+|..
T Consensus       221 ~L~vLDIS~~  230 (699)
T KOG3665|consen  221 KLRVLDISRD  230 (699)
T ss_pred             CCCeeecccc
Confidence            5555555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.38  E-value=8e-05  Score=58.83  Aligned_cols=41  Identities=27%  Similarity=0.303  Sum_probs=20.1

Q ss_pred             CceEEEecCCCCCCcccccc-CccCCCCCCCCEEeCCCCcCC
Q 038485           34 SRVIALDLSDTYGGEYWYLN-ASLFTPFQQLESLDLTDNKIA   74 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~-~~~~~~l~~L~~L~ls~n~l~   74 (184)
                      ++++.|+|+.|-+...+... ...+..+..|+.|.+.+|.+.
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            37778888887775411100 111223445555555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.09  E-value=0.00079  Score=58.83  Aligned_cols=113  Identities=25%  Similarity=0.306  Sum_probs=81.8

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCc-hhHHhhcc
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNN-SILSSLTH  111 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~  111 (184)
                      .+.+++|.+.+-.+...+  ......++++|..||+|+.+++...  .    ++.+++|+.|.+.+=.+.. .....+-.
T Consensus       147 LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~nl~--G----IS~LknLq~L~mrnLe~e~~~~l~~LF~  218 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISNLS--G----ISRLKNLQVLSMRNLEFESYQDLIDLFN  218 (699)
T ss_pred             CcccceEEecCceecchh--HHHHhhccCccceeecCCCCccCcH--H----HhccccHHHHhccCCCCCchhhHHHHhc
Confidence            577888888887665311  2234578999999999999998652  2    7899999998888776653 33455668


Q ss_pred             CCCCcEEeCCCccccCcccH------hhhcCCCCCcEEECCCCCCCccc
Q 038485          112 LSSLRSLNLFWNRLEGSIDV------KELDSLRDLEELDIGGNKIDKFV  154 (184)
Q Consensus       112 l~~L~~L~l~~n~~~~~l~~------~~~~~~~~L~~L~ls~N~l~~~~  154 (184)
                      +.+|+.||+|..... ..+.      +.-..++.|+.||.|++.+.+..
T Consensus       219 L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  219 LKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             ccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            999999999987654 2221      12335889999999998877643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.04  E-value=2.6e-05  Score=60.12  Aligned_cols=101  Identities=33%  Similarity=0.323  Sum_probs=74.6

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchh-HHhhcc
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSI-LSSLTH  111 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~-p~~~~~  111 (184)
                      ...+..|+.-|+++..   +.  +-..|+.|+.|.++-|.|+...|      +...+.|++|+|..|.|.+.. ..-+.+
T Consensus        18 l~~vkKLNcwg~~L~D---Is--ic~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~sldEL~YLkn   86 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD---IS--ICEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIESLDELEYLKN   86 (388)
T ss_pred             HHHhhhhcccCCCccH---HH--HHHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhcccccHHHHHHHhc
Confidence            4567788888888875   32  23678889999999999987665      778888999999999887433 234668


Q ss_pred             CCCCcEEeCCCccccCcccH----hhhcCCCCCcEEE
Q 038485          112 LSSLRSLNLFWNRLEGSIDV----KELDSLRDLEELD  144 (184)
Q Consensus       112 l~~L~~L~l~~n~~~~~l~~----~~~~~~~~L~~L~  144 (184)
                      +++|+.|.+..|...|.-+.    ..+..+++|+.||
T Consensus        87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88999999988887754332    2355677777775

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.99  E-value=0.00028  Score=53.69  Aligned_cols=86  Identities=24%  Similarity=0.386  Sum_probs=47.8

Q ss_pred             CCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCC--CCCchhHHhhccCCCCcEEeCCCccccC--cccHhhh
Q 038485           59 PFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGN--SFNNSILSSLTHLSSLRSLNLFWNRLEG--SIDVKEL  134 (184)
Q Consensus        59 ~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n--~~~~~~p~~~~~l~~L~~L~l~~n~~~~--~l~~~~~  134 (184)
                      .+..|+.+.+.+..++....      +..+++|+.|.++.|  ++++.++-....+++|+++.+++|++..  .++  .+
T Consensus        41 ~~~~le~ls~~n~gltt~~~------~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl  112 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTN------FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PL  112 (260)
T ss_pred             cccchhhhhhhccceeeccc------CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hh
Confidence            34445555555554442221      556667777777777  4444343334445777777777776641  222  24


Q ss_pred             cCCCCCcEEECCCCCCCc
Q 038485          135 DSLRDLEELDIGGNKIDK  152 (184)
Q Consensus       135 ~~~~~L~~L~ls~N~l~~  152 (184)
                      ..+.+|..|++..+...+
T Consensus       113 ~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTN  130 (260)
T ss_pred             hhhcchhhhhcccCCccc
Confidence            455566677777666555

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.87  E-value=0.0026  Score=49.20  Aligned_cols=119  Identities=22%  Similarity=0.152  Sum_probs=63.6

Q ss_pred             CCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhh-------------ccCCCCcEEeCCCc
Q 038485           57 FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-------------THLSSLRSLNLFWN  123 (184)
Q Consensus        57 ~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~-------------~~l~~L~~L~l~~n  123 (184)
                      +..+++|+..++|+|.+....|+.+.+-+++-+.|..|.+++|.+.......+             ..-+.|+.+....|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            34567777777777777777776666666677777777777777652211111             22456667766666


Q ss_pred             cccCcccHh----hhcCCCCCcEEECCCCCCCccccC---ccccccccceeeccccccce
Q 038485          124 RLEGSIDVK----ELDSLRDLEELDIGGNKIDKFVVS---KGTTNTIKNANLYKLAGFFA  176 (184)
Q Consensus       124 ~~~~~l~~~----~~~~~~~L~~L~ls~N~l~~~~~~---~~~~~~l~~L~~~~l~~~~~  176 (184)
                      ++. ..+..    .+..=..|..+.+..|.|.-....   .--+...++|.+++++-|-+
T Consensus       168 Rle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf  226 (388)
T COG5238         168 RLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF  226 (388)
T ss_pred             hhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence            664 22221    111123455566655555421000   01122345566666665544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.69  E-value=0.00095  Score=52.16  Aligned_cols=126  Identities=20%  Similarity=0.267  Sum_probs=70.6

Q ss_pred             CCCCceeEEecC-CCCceEEEecCCCCCCc-cccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECC
Q 038485           20 DCCQWERVECSN-TMSRVIALDLSDTYGGE-YWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLS   97 (184)
Q Consensus        20 ~~c~~~gv~c~~-~~~~l~~L~l~~n~l~~-~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~   97 (184)
                      -...|..|.|.- .+++++.|+++.|++.. ++.+|    ....+|+.+-+.+..+....-.+.   +..+|.++.++++
T Consensus        82 ~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp----~p~~nl~~lVLNgT~L~w~~~~s~---l~~lP~vtelHmS  154 (418)
T KOG2982|consen   82 LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP----LPLKNLRVLVLNGTGLSWTQSTSS---LDDLPKVTELHMS  154 (418)
T ss_pred             hhccHHHHHHHHhcCccceEeeccCCcCCCccccCc----ccccceEEEEEcCCCCChhhhhhh---hhcchhhhhhhhc
Confidence            445588777642 48899999999999875 11222    234556666555555543332221   3334444444444


Q ss_pred             CC-----------------------------------------------------CCCch-hHHhhccCCCCcEEeCCCc
Q 038485           98 GN-----------------------------------------------------SFNNS-ILSSLTHLSSLRSLNLFWN  123 (184)
Q Consensus        98 ~n-----------------------------------------------------~~~~~-~p~~~~~l~~L~~L~l~~n  123 (184)
                      .|                                                     .+... .-+....++++..|.++.+
T Consensus       155 ~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~  234 (418)
T KOG2982|consen  155 DNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN  234 (418)
T ss_pred             cchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccc
Confidence            44                                                     22110 1122333455556666666


Q ss_pred             cccCcccHhhhcCCCCCcEEECCCCCCCc
Q 038485          124 RLEGSIDVKELDSLRDLEELDIGGNKIDK  152 (184)
Q Consensus       124 ~~~~~l~~~~~~~~~~L~~L~ls~N~l~~  152 (184)
                      ++.+.-..+.+..+++|+.|++++|++.+
T Consensus       235 ~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  235 NIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             ccccHHHHHHHcCCchhheeeccCCcccc
Confidence            66544333457778888888888888765

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.59  E-value=0.0013  Score=50.19  Aligned_cols=87  Identities=22%  Similarity=0.369  Sum_probs=59.4

Q ss_pred             CCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCc--cccCcccHhhhcCCCCCcEEECCCCCCCccccCcccccccc
Q 038485           87 RLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWN--RLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIK  164 (184)
Q Consensus        87 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n--~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~  164 (184)
                      .+..|+.+...+.+++.  -..+..+++|+.|.++.|  .+++.++. ....+++|++++++.|+++. +....-++.+.
T Consensus        41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~  116 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKD-LSTLRPLKELE  116 (260)
T ss_pred             cccchhhhhhhccceee--cccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCcccc-ccccchhhhhc
Confidence            34456666666666551  235667889999999999  67666765 45566999999999999985 33444445566


Q ss_pred             ceeecccccccee
Q 038485          165 NANLYKLAGFFAI  177 (184)
Q Consensus       165 ~L~~~~l~~~~~~  177 (184)
                      +|..+++..++.+
T Consensus       117 nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  117 NLKSLDLFNCSVT  129 (260)
T ss_pred             chhhhhcccCCcc
Confidence            6666666555543

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.47  E-value=0.0026  Score=34.96  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=14.7

Q ss_pred             ccccCCCCCCC-CCCCCceeEEec
Q 038485            8 GYKDRKNGEGA-TDCCQWERVECS   30 (184)
Q Consensus         8 ~~~~~~~~~~~-~~~c~~~gv~c~   30 (184)
                      ...+..|+.+. .++|+|.||.|.
T Consensus        20 ~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen   20 SGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             -CCCTT--TT--S-CCCSTTEEE-
T ss_pred             CcccccCCCcCCCCCeeeccEEeC
Confidence            45688998643 899999999994

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.23  E-value=0.023  Score=46.74  Aligned_cols=53  Identities=11%  Similarity=0.068  Sum_probs=28.4

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCC
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGN   99 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n   99 (184)
                      ..++.|+++++.+..   +| .   -..+|+.|.++++.-....|..    +  .++|+.|++.+|
T Consensus        52 ~~l~~L~Is~c~L~s---LP-~---LP~sLtsL~Lsnc~nLtsLP~~----L--P~nLe~L~Ls~C  104 (426)
T PRK15386         52 RASGRLYIKDCDIES---LP-V---LPNELTEITIENCNNLTTLPGS----I--PEGLEKLTVCHC  104 (426)
T ss_pred             cCCCEEEeCCCCCcc---cC-C---CCCCCcEEEccCCCCcccCCch----h--hhhhhheEccCc
Confidence            456778888777665   43 1   1235677777663332233332    2  235566666655

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.23  E-value=0.02  Score=38.66  Aligned_cols=101  Identities=15%  Similarity=0.323  Sum_probs=51.8

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  113 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~  113 (184)
                      .+++.+.+.. .+..   +....|..+.+|+.+.+..+ +.......    |.....++.+.+.. .+.......|..+.
T Consensus        12 ~~l~~i~~~~-~~~~---I~~~~F~~~~~l~~i~~~~~-~~~i~~~~----F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen   12 SNLESITFPN-TIKK---IGENAFSNCTSLKSINFPNN-LTSIGDNA----FSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TT--EEEETS-T--E---E-TTTTTT-TT-SEEEESST-TSCE-TTT----TTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             CCCCEEEECC-CeeE---eChhhccccccccccccccc-ccccceee----eecccccccccccc-cccccccccccccc
Confidence            3566777664 4544   67777777777888887764 54444333    66666777777765 33323334556677


Q ss_pred             CCcEEeCCCccccCcccHhhhcCCCCCcEEECCC
Q 038485          114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGG  147 (184)
Q Consensus       114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~  147 (184)
                      .++.+.+..+ +. .++...+..+ .++.+.+..
T Consensus        82 ~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   82 NLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TECEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred             cccccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence            7777877654 44 4555456666 777777653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.12  E-value=0.00023  Score=54.97  Aligned_cols=88  Identities=20%  Similarity=0.202  Sum_probs=69.0

Q ss_pred             CCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCC
Q 038485           60 FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRD  139 (184)
Q Consensus        60 l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~  139 (184)
                      +.+.+.|+.=++.+..+.-      +.+|+.|+.|.|+-|.++.  ...+..|++|+.|+|..|.|.+.-....+.++++
T Consensus        18 l~~vkKLNcwg~~L~DIsi------c~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlps   89 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI------CEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPS   89 (388)
T ss_pred             HHHhhhhcccCCCccHHHH------HHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence            4566777777777765432      6789999999999999973  3457789999999999999983323335789999


Q ss_pred             CcEEECCCCCCCcccc
Q 038485          140 LEELDIGGNKIDKFVV  155 (184)
Q Consensus       140 L~~L~ls~N~l~~~~~  155 (184)
                      |+.|.+..|+-.+.-+
T Consensus        90 Lr~LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   90 LRTLWLDENPCCGEAG  105 (388)
T ss_pred             hhhHhhccCCcccccc
Confidence            9999999999887654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.84  E-value=0.0039  Score=48.90  Aligned_cols=39  Identities=18%  Similarity=0.167  Sum_probs=20.0

Q ss_pred             ccCCCCcEEeCCCcc-ccCcccHhhhcCCCCCcEEECCCCC
Q 038485          110 THLSSLRSLNLFWNR-LEGSIDVKELDSLRDLEELDIGGNK  149 (184)
Q Consensus       110 ~~l~~L~~L~l~~n~-~~~~l~~~~~~~~~~L~~L~ls~N~  149 (184)
                      ..++.|.+||++.+- ++... ...+..++.|+++.++.+.
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~-~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDC-FQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             HhCCceeeeccccccccCchH-HHHHHhcchheeeehhhhc
Confidence            345666666666653 33211 1234455666666665544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.59  E-value=0.034  Score=37.54  Aligned_cols=92  Identities=25%  Similarity=0.357  Sum_probs=57.1

Q ss_pred             ccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccH
Q 038485           52 LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV  131 (184)
Q Consensus        52 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~  131 (184)
                      ++...|..+.+|+.+.+.. .+.......    |...++++.+.+..+ +.......|..+.+++.+.+.. .+. .++.
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~----F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~   74 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENA----FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGD   74 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTT----TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-T
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhh----ccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccc
Confidence            5667788889999999885 465555554    888889999999875 5534455677887899999976 444 5555


Q ss_pred             hhhcCCCCCcEEECCCCCCCc
Q 038485          132 KELDSLRDLEELDIGGNKIDK  152 (184)
Q Consensus       132 ~~~~~~~~L~~L~ls~N~l~~  152 (184)
                      ..+..++.++.+++..+ +..
T Consensus        75 ~~F~~~~~l~~i~~~~~-~~~   94 (129)
T PF13306_consen   75 NAFSNCTNLKNIDIPSN-ITE   94 (129)
T ss_dssp             TTTTT-TTECEEEETTT--BE
T ss_pred             ccccccccccccccCcc-ccE
Confidence            57888999999999765 543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.51  E-value=0.02  Score=44.50  Aligned_cols=142  Identities=19%  Similarity=0.187  Sum_probs=91.5

Q ss_pred             CCceEEEecCCCCCCccc-cccCccCCCCCCCCEEeCCCCcCCCcchhhh-------hhhhcCCCCCcEEECCCCCCCch
Q 038485           33 MSRVIALDLSDTYGGEYW-YLNASLFTPFQQLESLDLTDNKIASCVENEG-------IERLSRLNNLKMLNLSGNSFNNS  104 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~-~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~-------~~~~~~l~~L~~L~l~~n~~~~~  104 (184)
                      +..+++++|+||.+..-. ..-...+.+-.+|+..++++-.. +..-+.+       -+++.+.|+++..+++.|.+...
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ft-gr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFT-GRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhh-cccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            567899999999986410 00112234567788888776533 2322221       35578899999999999999877


Q ss_pred             hHHhh----ccCCCCcEEeCCCccccCcccHhhhc-------------CCCCCcEEECCCCCCCccccCc--cccccccc
Q 038485          105 ILSSL----THLSSLRSLNLFWNRLEGSIDVKELD-------------SLRDLEELDIGGNKIDKFVVSK--GTTNTIKN  165 (184)
Q Consensus       105 ~p~~~----~~l~~L~~L~l~~n~~~~~l~~~~~~-------------~~~~L~~L~ls~N~l~~~~~~~--~~~~~l~~  165 (184)
                      .|+.+    .....|.+|.+++|.+. .+..+.++             .-|.|+.++.+.|++.......  ..+..=+.
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~  186 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN  186 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence            77654    45678999999999884 54443333             4578999999999987643221  12222234


Q ss_pred             eeeccccccce
Q 038485          166 ANLYKLAGFFA  176 (184)
Q Consensus       166 L~~~~l~~~~~  176 (184)
                      |+.+.+..|-|
T Consensus       187 lk~vki~qNgI  197 (388)
T COG5238         187 LKEVKIQQNGI  197 (388)
T ss_pred             ceeEEeeecCc
Confidence            55555555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=94.42  E-value=0.0027  Score=49.69  Aligned_cols=87  Identities=26%  Similarity=0.305  Sum_probs=55.1

Q ss_pred             CCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCc-cccCccc-HhhhcCCCC
Q 038485           62 QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWN-RLEGSID-VKELDSLRD  139 (184)
Q Consensus        62 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n-~~~~~l~-~~~~~~~~~  139 (184)
                      .++++|+++..++...-..   .++...+|+.+.+.++++.+.+...+..-..|+.++++.+ .++ +.. ...+..|+.
T Consensus       186 Rlq~lDLS~s~it~stl~~---iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t-~n~~~ll~~scs~  261 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHG---ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT-ENALQLLLSSCSR  261 (419)
T ss_pred             hhHHhhcchhheeHHHHHH---HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc-hhHHHHHHHhhhh
Confidence            5777788777765332211   1455667777777788777776677777777777777765 344 221 113556777


Q ss_pred             CcEEECCCCCCCc
Q 038485          140 LEELDIGGNKIDK  152 (184)
Q Consensus       140 L~~L~ls~N~l~~  152 (184)
                      |..|+++.+.+..
T Consensus       262 L~~LNlsWc~l~~  274 (419)
T KOG2120|consen  262 LDELNLSWCFLFT  274 (419)
T ss_pred             HhhcCchHhhccc
Confidence            7777777766544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.27  E-value=0.022  Score=26.37  Aligned_cols=16  Identities=44%  Similarity=0.384  Sum_probs=7.3

Q ss_pred             CcEEeCCCccccCcccH
Q 038485          115 LRSLNLFWNRLEGSIDV  131 (184)
Q Consensus       115 L~~L~l~~n~~~~~l~~  131 (184)
                      |++|++++|.++ .+|.
T Consensus         2 L~~Ldls~n~l~-~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPS   17 (22)
T ss_dssp             ESEEEETSSEES-EEGT
T ss_pred             ccEEECCCCcCE-eCCh
Confidence            344444444444 4443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.12  E-value=0.13  Score=42.37  Aligned_cols=95  Identities=18%  Similarity=0.258  Sum_probs=50.1

Q ss_pred             CCceEEEecCCC-CCCccccccCccCCCCCCCCEEeCCCC-cCCCcchhhhhhhhcCCCCCcEEECCCCCCC--chhHHh
Q 038485           33 MSRVIALDLSDT-YGGEYWYLNASLFTPFQQLESLDLTDN-KIASCVENEGIERLSRLNNLKMLNLSGNSFN--NSILSS  108 (184)
Q Consensus        33 ~~~l~~L~l~~n-~l~~~~~~~~~~~~~l~~L~~L~ls~n-~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~--~~~p~~  108 (184)
                      +..+++|+++++ .++.   ++...   ..+|++|.+++| .+. ..|.          +|+.|++..+...  ..+|..
T Consensus        71 P~sLtsL~Lsnc~nLts---LP~~L---P~nLe~L~Ls~Cs~L~-sLP~----------sLe~L~L~~n~~~~L~~LPss  133 (426)
T PRK15386         71 PNELTEITIENCNNLTT---LPGSI---PEGLEKLTVCHCPEIS-GLPE----------SVRSLEIKGSATDSIKNVPNG  133 (426)
T ss_pred             CCCCcEEEccCCCCccc---CCchh---hhhhhheEccCccccc-cccc----------ccceEEeCCCCCcccccCcch
Confidence            567999999874 3333   33222   257888888887 443 2332          3445555443321  123332


Q ss_pred             hccC------------------CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCC
Q 038485          109 LTHL------------------SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGN  148 (184)
Q Consensus       109 ~~~l------------------~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N  148 (184)
                      +..+                  .+|++|++++|... .+|. .+  ..+|+.|+++.+
T Consensus       134 Lk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~-~L--P~SLk~L~ls~n  187 (426)
T PRK15386        134 LTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPE-KL--PESLQSITLHIE  187 (426)
T ss_pred             HhheeccccccccccccccccCCcccEEEecCCCcc-cCcc-cc--cccCcEEEeccc
Confidence            2211                  35677777776654 3332 11  246777777655

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.28  E-value=0.061  Score=23.21  Aligned_cols=11  Identities=36%  Similarity=0.785  Sum_probs=3.3

Q ss_pred             CcEEECCCCCC
Q 038485          140 LEELDIGGNKI  150 (184)
Q Consensus       140 L~~L~ls~N~l  150 (184)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            34444444443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.59  E-value=0.15  Score=24.34  Aligned_cols=17  Identities=41%  Similarity=0.503  Sum_probs=7.9

Q ss_pred             CCcEEeCCCccccCcccH
Q 038485          114 SLRSLNLFWNRLEGSIDV  131 (184)
Q Consensus       114 ~L~~L~l~~n~~~~~l~~  131 (184)
                      +|+.|++++|.++ .+|.
T Consensus         3 ~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        3 NLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCEEECCCCcCC-cCCH
Confidence            3444455555444 4443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.59  E-value=0.15  Score=24.34  Aligned_cols=17  Identities=41%  Similarity=0.503  Sum_probs=7.9

Q ss_pred             CCcEEeCCCccccCcccH
Q 038485          114 SLRSLNLFWNRLEGSIDV  131 (184)
Q Consensus       114 ~L~~L~l~~n~~~~~l~~  131 (184)
                      +|+.|++++|.++ .+|.
T Consensus         3 ~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        3 NLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCEEECCCCcCC-cCCH
Confidence            3444455555444 4443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.17  E-value=0.043  Score=40.62  Aligned_cols=82  Identities=24%  Similarity=0.282  Sum_probs=53.8

Q ss_pred             CCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCc-hhHHhhcc-CCCCcEEeCCCc-cccCcccHhhhcCC
Q 038485           61 QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNN-SILSSLTH-LSSLRSLNLFWN-RLEGSIDVKELDSL  137 (184)
Q Consensus        61 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~-l~~L~~L~l~~n-~~~~~l~~~~~~~~  137 (184)
                      ..++.++.++..|....-+.    +..++.++.+.+.++.--+ ...+.+++ .++|+.|++++| +|+ .-....+..+
T Consensus       101 ~~IeaVDAsds~I~~eGle~----L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~l  175 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEH----LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKL  175 (221)
T ss_pred             ceEEEEecCCchHHHHHHHH----HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHh
Confidence            34677788887776655554    7777888888777766432 22344443 378888888887 465 3333467777


Q ss_pred             CCCcEEECCC
Q 038485          138 RDLEELDIGG  147 (184)
Q Consensus       138 ~~L~~L~ls~  147 (184)
                      ++|+.|.+..
T Consensus       176 knLr~L~l~~  185 (221)
T KOG3864|consen  176 KNLRRLHLYD  185 (221)
T ss_pred             hhhHHHHhcC
Confidence            8888777654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.43  E-value=0.0024  Score=48.30  Aligned_cols=84  Identities=17%  Similarity=0.162  Sum_probs=41.6

Q ss_pred             CCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCC
Q 038485           59 PFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLR  138 (184)
Q Consensus        59 ~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~  138 (184)
                      .+...+.||++.|++......     |+.++.+..++++.|.+. ..|+.++....+.++++..|..+ ..|. .++..+
T Consensus        40 ~~kr~tvld~~s~r~vn~~~n-----~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~k~~  111 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLGKN-----FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQKKEP  111 (326)
T ss_pred             ccceeeeehhhhhHHHhhccc-----hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-cccccC
Confidence            344455555555554432221     444555555555555554 44555555555555555555554 4554 455555


Q ss_pred             CCcEEECCCCCC
Q 038485          139 DLEELDIGGNKI  150 (184)
Q Consensus       139 ~L~~L~ls~N~l  150 (184)
                      .++.+++-.|++
T Consensus       112 ~~k~~e~k~~~~  123 (326)
T KOG0473|consen  112 HPKKNEQKKTEF  123 (326)
T ss_pred             CcchhhhccCcc
Confidence            555555544443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=86.37  E-value=1.1  Score=36.92  Aligned_cols=93  Identities=28%  Similarity=0.224  Sum_probs=43.5

Q ss_pred             CCCCCCCEEeCCCC-cCCCcchhhhhhhhcCCCCCcEEECCCCC-CCchhHHhhcc-CCCCcEEeCCCcc-ccCcccHhh
Q 038485           58 TPFQQLESLDLTDN-KIASCVENEGIERLSRLNNLKMLNLSGNS-FNNSILSSLTH-LSSLRSLNLFWNR-LEGSIDVKE  133 (184)
Q Consensus        58 ~~l~~L~~L~ls~n-~l~~~~p~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~-l~~L~~L~l~~n~-~~~~l~~~~  133 (184)
                      ...++|+.|+++++ ......+..........+.|+.++++++. +++..-..+.. ++.|+.+.+.++. +++.--...
T Consensus       211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i  290 (482)
T KOG1947|consen  211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI  290 (482)
T ss_pred             hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence            44566666666652 11111110000012334566666666655 55444444432 5666666655555 332211113


Q ss_pred             hcCCCCCcEEECCCCCC
Q 038485          134 LDSLRDLEELDIGGNKI  150 (184)
Q Consensus       134 ~~~~~~L~~L~ls~N~l  150 (184)
                      ...++.|++|+++.+..
T Consensus       291 ~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  291 AERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHhcCcccEEeeecCcc
Confidence            34556667776665543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.22  E-value=0.35  Score=22.53  Aligned_cols=8  Identities=63%  Similarity=1.053  Sum_probs=2.5

Q ss_pred             CEEeCCCC
Q 038485           64 ESLDLTDN   71 (184)
Q Consensus        64 ~~L~ls~n   71 (184)
                      ++|++++|
T Consensus         5 ~~L~l~~n   12 (24)
T PF13516_consen    5 ETLDLSNN   12 (24)
T ss_dssp             SEEE-TSS
T ss_pred             CEEEccCC
Confidence            33333333

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.03  E-value=0.016  Score=44.07  Aligned_cols=87  Identities=14%  Similarity=0.129  Sum_probs=67.5

Q ss_pred             hcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCcccccccc
Q 038485           85 LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIK  164 (184)
Q Consensus        85 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~  164 (184)
                      +......+.+|++.|++. .+-..|..+..+..++++.|.+. .+|. .++....++++++..|..+..|.+..   .++
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~-d~~q~~e~~~~~~~~n~~~~~p~s~~---k~~  111 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPK-DAKQQRETVNAASHKNNHSQQPKSQK---KEP  111 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChh-hHHHHHHHHHHHhhccchhhCCcccc---ccC
Confidence            556667788999999876 45566777788899999999998 8887 78888889999998888887654444   466


Q ss_pred             ceeecccccccee
Q 038485          165 NANLYKLAGFFAI  177 (184)
Q Consensus       165 ~L~~~~l~~~~~~  177 (184)
                      ++..+++.++.++
T Consensus       112 ~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  112 HPKKNEQKKTEFF  124 (326)
T ss_pred             CcchhhhccCcch
Confidence            6677777777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-12
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-12
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 97.7 bits (244), Expect = 4e-24
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 11/137 (8%)

Query: 17  GATDCCQWERVECSNTMSRVIALDLSDTY-GGEYWYLNASLFTPFQQLESLDLTDNKIAS 75
              + C ++ V C +   +V ++DLS       +  +++SL      LESL L+++ I  
Sbjct: 35  SNKNPCTFDGVTCRD--DKVTSIDLSSKPLNVGFSAVSSSLL-SLTGLESLFLSNSHI-- 89

Query: 76  CVENEGIERLSRLNNLKMLNLSGNSFNNSI--LSSLTHLSSLRSLNLFWNRLEGSIDVKE 133
              N  +       +L  L+LS NS +  +  L+SL   S L+ LN+  N L+    V  
Sbjct: 90  ---NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG 146

Query: 134 LDSLRDLEELDIGGNKI 150
              L  LE LD+  N I
Sbjct: 147 GLKLNSLEVLDLSANSI 163

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.2 bits (165), Expect = 1e-13
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 59  PFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSL 118
           P + L+ L L +NK    + +           L  L+LSGN F  ++       S L SL
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACD---TLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

Query: 119 NLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            L  N   G + +  L  +R L+ LD+  N+ 
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.9 bits (159), Expect = 7e-13
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 15/125 (12%)

Query: 27  VECSNTMSRVIALDLSDTYGGEYWYLNASL-FTPFQQLESLDLTDNKIASCVENEGIERL 85
              S+    +  L +S         ++  +  +    LE LD++ N  ++     GI  L
Sbjct: 171 WVLSDGCGELKHLAISGNK------ISGDVDVSRCVNLEFLDVSSNNFST-----GIPFL 219

Query: 86  SRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDI 145
              + L+ L++SGN  +     +++  + L+ LN+  N+  G I       L+ L+ L +
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP---PLPLKSLQYLSL 276

Query: 146 GGNKI 150
             NK 
Sbjct: 277 AENKF 281

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.2 bits (152), Expect = 6e-12
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 62  QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLF 121
           +L SL L+ N ++  + +     L  L+ L+ L L  N     I   L ++ +L +L L 
Sbjct: 419 ELVSLHLSFNYLSGTIPSS----LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 122 WNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           +N L G I    L +  +L  + +  N++
Sbjct: 475 FNDLTGEIP-SGLSNCTNLNWISLSNNRL 502

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
                  ++T                    ++  L++S N  +  I   +  +  L  LN
Sbjct: 607 LSTRNPCNITSRVYGGHTSPT----FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNK 149
           L  N + GSI   E+  LR L  LD+  NK
Sbjct: 663 LGHNDISGSIP-DEVGDLRGLNILDLSSNK 691

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.2 bits (144), Expect = 7e-11
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 54  ASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 113
            SL      L +LDL+ N  +  +     +  +  N L+ L L  N F   I  +L++ S
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNGFTGKIPPTLSNCS 418

Query: 114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            L SL+L +N L G+I    L SL  L +L +  N +
Sbjct: 419 ELVSLHLSFNYLSGTI-PSSLGSLSKLRDLKLWLNML 454

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.8 bits (143), Expect = 8e-11
 Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 9/95 (9%)

Query: 58  TPFQQLESLDLTDNKIASCVENEGI--ERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 115
            P   L+ L L +N         G     LS  + L  L+LS N  + +I SSL  LS L
Sbjct: 391 NPKNTLQELYLQNNGF------TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444

Query: 116 RSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           R L L+ N LEG I  +EL  ++ LE L +  N +
Sbjct: 445 RDLKLWLNMLEGEIP-QELMYVKTLETLILDFNDL 478

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 9/92 (9%)

Query: 61  QQLESLDLTDNKIASCVENEGI--ERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSL 118
           + LE+L L  N +       G     LS   NL  ++LS N     I   +  L +L  L
Sbjct: 466 KTLETLILDFNDL------TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519

Query: 119 NLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            L  N   G+I   EL   R L  LD+  N  
Sbjct: 520 KLSNNSFSGNIP-AELGDCRSLIWLDLNTNLF 550

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 62  QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH-LSSLRSLNL 120
           +L+ L+++ N+        G      L +L+ L+L+ N F   I   L+    +L  L+L
Sbjct: 248 ELKLLNISSNQF------VGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301

Query: 121 FWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
             N   G++      S   LE L +  N  
Sbjct: 302 SGNHFYGAVP-PFFGSCSLLESLALSSNNF 330

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.5 bits (137), Expect = 5e-10
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 60  FQQLESLDLTDNKIASCVENEGI--ERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRS 117
             +L  L L  N +      EG   + L  +  L+ L L  N     I S L++ ++L  
Sbjct: 441 LSKLRDLKLWLNML------EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494

Query: 118 LNLFWNRLEGSIDVKELDSLRDLEELDIGGNK 149
           ++L  NRL G I  K +  L +L  L +  N 
Sbjct: 495 ISLSNNRLTGEIP-KWIGRLENLAILKLSNNS 525

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 60  FQQLESLDLTDNKIASCVENEGI-ERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSL 118
              +  LD++ N +     +  I + +  +  L +LNL  N  + SI   +  L  L  L
Sbjct: 631 NGSMMFLDMSYNML-----SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685

Query: 119 NLFWNRLEGSIDVKELDSLRDLEELDIGGNK 149
           +L  N+L+G I  + + +L  L E+D+  N 
Sbjct: 686 DLSSNKLDGRIP-QAMSALTMLTEIDLSNNN 715

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.4 bits (129), Expect = 6e-09
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS-SLRSLN 119
             LESL L+ N  +  +  +    L ++  LK+L+LS N F+  +  SLT+LS SL +L+
Sbjct: 318 SLLESLALSSNNFSGELPMDT---LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 120 LFWNRLEGSI-DVKELDSLRDLEELDIGGNKI 150
           L  N   G I      +    L+EL +  N  
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 120
             L  + L++N++   +       + RL NL +L LS NSF+ +I + L    SL  L+L
Sbjct: 490 TNLNWISLSNNRLTGEIPKW----IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

Query: 121 FWNRLEGSI 129
             N   G+I
Sbjct: 546 NTNLFNGTI 554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 4e-07
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 54  ASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL--TH 111
                  + L+ LDL+ N+ +  +    +  LS   +L  L+LS N+F+  IL +L    
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPES-LTNLS--ASLLTLDLSSNNFSGPILPNLCQNP 392

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            ++L+ L L  N   G I    L +  +L  L +  N +
Sbjct: 393 KNTLQELYLQNNGFTGKIP-PTLSNCSELVSLHLSFNYL 430

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 61  QQLESLDLTDNKIASCVENEGI-ERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
             L  L+L  N I     +  I + +  L  L +L+LS N  +  I  +++ L+ L  ++
Sbjct: 656 PYLFILNLGHNDI-----SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710

Query: 120 LFWNRLEGSI 129
           L  N L G I
Sbjct: 711 LSNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 9e-07
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 83  ERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEE 142
           E+L+RL+     N++   +      +  +  S+  L++ +N L G I  KE+ S+  L  
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP-KEIGSMPYLFI 660

Query: 143 LDIGGNKI 150
           L++G N I
Sbjct: 661 LNLGHNDI 668

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 19/109 (17%)

Query: 60  FQQLESLDLTDNK--------IASCVENEGIERLS--------RLNNLKMLNLSGN--SF 101
            + L  LDL  N         +           ++             K  + +GN   F
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596

Query: 102 NNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
                  L  LS+    N+      G       D+   +  LD+  N +
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHT-SPTFDNNGSMMFLDMSYNML 644

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.7 bits (166), Expect = 1e-14
 Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 62  QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLF 121
            LE L +    +     ++ I  LS L +L +L++S ++ ++SIL+ +  L  + S++L 
Sbjct: 89  NLERLRIMGKDV----TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 122 WNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           +N      D+  L +L +L+ L+I  + +  +
Sbjct: 145 YNGAIT--DIMPLKTLPELKSLNIQFDGVHDY 174

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 3e-12
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 9/96 (9%)

Query: 62  QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLF 121
            L  + L +  +        +  +   +N+K L ++     N   + ++ LS+L  L + 
Sbjct: 45  SLTYITLANINVTD------LTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIM 96

Query: 122 WNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSK 157
              +  S  +  L  L  L  LDI  +  D  +++K
Sbjct: 97  GKDV-TSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.7 bits (148), Expect = 4e-12
 Identities = 15/90 (16%), Positives = 41/90 (45%), Gaps = 7/90 (7%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
              ++ L + +    +         +S L+NL+ L + G    +  + +L+ L+SL  L+
Sbjct: 65  AHNIKDLTINNIHATN------YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNK 149
           +  +  +    + ++++L  +  +D+  N 
Sbjct: 119 ISHSAHD-DSILTKINTLPKVNSIDLSYNG 147

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.7 bits (148), Expect = 5e-12
 Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
            +    L  LD++ +      ++  + +++ L  +  ++LS N     I   L  L  L+
Sbjct: 108 LSGLTSLTLLDISHSAH----DDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELK 162

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           SLN+ ++ +    D + ++    L +L      I
Sbjct: 163 SLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 15/91 (16%), Positives = 37/91 (40%), Gaps = 12/91 (13%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
           F+   +  L  +  A+  E +       +N+L  + L+  +  +  L+ + +  +++ L 
Sbjct: 22  FKAYLNGLLGQSSTANITEAQ-------MNSLTYITLANINVTD--LTGIEYAHNIKDLT 72

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           +         +   +  L +LE L I G  +
Sbjct: 73  INNIHAT---NYNPISGLSNLERLRIMGKDV 100

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 69.1 bits (170), Expect = 1e-14
 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 11/139 (7%)

Query: 17  GATDCCQ--WERVECSNT--MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTD-N 71
             TDCC   W  V C       RV  LDLS     + + + +SL      L  L +   N
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGIN 87

Query: 72  KIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV 131
            +   +       +++L  L  L ++  + + +I   L+ + +L +L+  +N L G++  
Sbjct: 88  NLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP- 142

Query: 132 KELDSLRDLEELDIGGNKI 150
             + SL +L  +   GN+I
Sbjct: 143 PSISSLPNLVGITFDGNRI 161

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 61  QQLESLDLTDNKIASCVENEG-IERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
           +  + + L  N +         + ++    NL  L+L  N    ++   LT L  L SLN
Sbjct: 221 KNTQKIHLAKNSL------AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNK 149
           + +N L G I   +  +L+  +      NK
Sbjct: 275 VSFNNLCGEIP--QGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.9 bits (128), Expect = 8e-09
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 90  NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK 149
           NL  ++LS N              + + ++L  N L   +   ++   ++L  LD+  N+
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNR 255

Query: 150 I 150
           I
Sbjct: 256 I 256

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 120
             L  +    N+I+  + +      S+L     + +S N     I  +  +L +L  ++L
Sbjct: 149 PNLVGITFDGNRISGAIPDS-YGSFSKL--FTSMTISRNRLTGKIPPTFANL-NLAFVDL 204

Query: 121 FWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
             N LEG        S ++ +++ +  N +
Sbjct: 205 SRNMLEGDAS-VLFGSDKNTQKIHLAKNSL 233

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 3e-14
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 5/108 (4%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           ++++ F  F  L+ LDLT   ++  + +     L  L+ LK L LS N F N    S ++
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLSE-LPSG----LVGLSTLKKLVLSANKFENLCQISASN 323

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGT 159
             SL  L++  N     +    L++L +L ELD+  + I+        
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           L        + L  LDL+ + I +         L  L++L+ LNLS N   +    +   
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQ--LRNLSHLQSLNLSYNEPLSLKTEAFKE 398

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
              L  L+L + RL+         +L  L+ L++  + +D  
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.7 bits (158), Expect = 8e-13
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 9/101 (8%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL 109
           +  + F+    L  LDLT  +I        I        + L  L L+ N       ++L
Sbjct: 48  IQNTTFSRLINLTFLDLTRCQI------YWIHEDTFQSQHRLDTLVLTANPLIFMAETAL 101

Query: 110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           +   +L+ L      +  SID   L + + LE L +G N I
Sbjct: 102 SGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHI 141

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 5/94 (5%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
           F    +L++L LT N +    E      LS    LK L       ++     L +  +L 
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETA----LSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           SL L  N +  SI + +      L+ LD   N I
Sbjct: 133 SLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAI 165

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           L    F    QLE LDL   ++    + +       L+ LK+LNLS +  + S       
Sbjct: 391 LKTEAFKECPQLELLDLAFTRL-KVKDAQSP--FQNLHLLKVLNLSHSLLDISSEQLFDG 447

Query: 112 LSSLRSLNLFWNRLEGSIDVKE--LDSLRDLEELDIGGNKID 151
           L +L+ LNL  N        K   L +L  LE L +    + 
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.7 bits (153), Expect = 5e-12
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 6/113 (5%)

Query: 39  LDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSG 98
           L+L   +  +      +      +LE L L+   ++S  ++      + L  +  ++LS 
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA----FTSLKMMNHVDLSH 509

Query: 99  NSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKID 151
           N   +S + +L+HL  +  LNL  N +   I    L  L     +++  N +D
Sbjct: 510 NRLTSSSIEALSHLKGIY-LNLASNHIS-IILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 4e-11
 Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 6/102 (5%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILS--S 108
            L     + F  L  L +  N     +       L  L NL+ L+LS +    S      
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGC---LENLENLRELDLSHDDIETSDCCNLQ 371

Query: 109 LTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L +LS L+SLNL +N    S+  +       LE LD+   ++
Sbjct: 372 LRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRL 412

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 63  LESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFW 122
            E L+ + N + +          SRL NL  L+L+          +      L +L L  
Sbjct: 35  TECLEFSFNVLPTIQNTT----FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 123 NRLEGSIDVKELDSLRDLEELDIGGNKI 150
           N L   +    L   + L+ L      I
Sbjct: 91  NPLI-FMAETALSGPKALKHLFFIQTGI 117

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 5/115 (4%)

Query: 39  LDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSG 98
           L+   T             +  Q L      D        +  +       +++ +NL  
Sbjct: 207 LNFGGTQNLLVI-FKGLKNSTIQSLWLGTFEDMDDED--ISPAVFEGLCEMSVESINLQK 263

Query: 99  NSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           + F N   ++    S L+ L+L    L   +    L  L  L++L +  NK +  
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLS-ELP-SGLVGLSTLKKLVLSANKFENL 316

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSI-LSSLT 110
                      L+SL+L+ N+  S ++ E          L++L+L+          S   
Sbjct: 367 CCNLQLRNLSHLQSLNLSYNEPLS-LKTEA---FKECPQLELLDLAFTRLKVKDAQSPFQ 422

Query: 111 HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           +L  L+ LNL  + L+     +  D L  L+ L++ GN   K 
Sbjct: 423 NLHLLKVLNLSHSLLD-ISSEQLFDGLPALQHLNLQGNHFPKG 464

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 8/116 (6%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           ++       + LESL L  N I+S    +          LK+L+   N+ +      ++ 
Sbjct: 120 IDFIPLHNQKTLESLYLGSNHISSIKLPK----GFPTEKLKVLDFQNNAIHYLSKEDMSS 175

Query: 112 LSSLR--SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKN 165
           L      SLNL  N +   I+    DS    + L+ GG +    +      +TI++
Sbjct: 176 LQQATNLSLNLNGNDIA-GIEPGAFDSAV-FQSLNFGGTQNLLVIFKGLKNSTIQS 229

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 9e-08
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 88  LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGG 147
            N+ + L  S N       ++ + L +L  L+L   ++   I      S   L+ L +  
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTA 90

Query: 148 NKI 150
           N +
Sbjct: 91  NPL 93

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 110
            ++   FT  + +  +DL+ N++ +    E +  L  +     LNL+ N  +  + S L 
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRL-TSSSIEALSHLKGI----YLNLASNHISIILPSLLP 544

Query: 111 HLSSLRSLNLFWNRLEGSIDVKEL 134
            LS  R++NL  N L+ +      
Sbjct: 545 ILSQQRTINLRQNPLDCTCSNIYF 568

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 10/105 (9%)

Query: 51  YLNASLFTPFQQLE--SLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSS 108
           YL+    +  QQ    SL+L  N IA                 + LN  G      I   
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPG-----AFDSAVFQSLNFGGTQNLLVIFKG 221

Query: 109 LTH--LSSLRSLNLFWNRLEG-SIDVKELDSLRDLEELDIGGNKI 150
           L +  + SL          E  S  V E      +E +++  +  
Sbjct: 222 LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.5 bits (168), Expect = 4e-14
 Identities = 20/103 (19%), Positives = 44/103 (42%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 110
            + +++FT    L+ L L+++  +              + L +LNL+ N  +     + +
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402

Query: 111 HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
            L  L  L+L  N +   +  +E   L ++ E+ +  NK  + 
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.7 bits (166), Expect = 8e-14
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 9/101 (8%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL 109
           L A+ FT + QL SLD+  N I        +E     +L  LK+LNL  N  +     + 
Sbjct: 40  LPAANFTRYSQLTSLDVGFNTI------SKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93

Query: 110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
              ++L  L+L  N ++   +       ++L  LD+  N +
Sbjct: 94  AFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGL 133

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 10/133 (7%)

Query: 39  LDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSG 98
           LD+          L   L      L+ L+L  N+++   +       +   NL  L+L  
Sbjct: 54  LDVGFN---TISKLEPELCQKLPMLKVLNLQHNELSQLSDKT----FAFCTNLTELHLMS 106

Query: 99  NSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKG 158
           NS      +      +L +L+L  N L  +        L +L+EL +  NKI        
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQAL--KSE 163

Query: 159 TTNTIKNANLYKL 171
             +   N++L KL
Sbjct: 164 ELDIFANSSLKKL 176

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.8 bits (161), Expect = 4e-13
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFN--NSILSSL 109
           L    +   + +  + L+ NK      N      + + +L+ L L   +    +S  S  
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNS----FALVPSLQRLMLRRVALKNVDSSPSPF 476

Query: 110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
             L +L  L+L  N +   I+   L+ L  LE LD+  N + + 
Sbjct: 477 QPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARL 519

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEG----IERLSRLNNLKMLNLSGNSFNNSIL 106
            +N  +    ++LE LDL  N +A   ++      I  L  L++L +LNL  N F+   +
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553

Query: 107 SSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
                L  L+ ++L  N L   +     ++   L+ L++  N I
Sbjct: 554 EVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLI 596

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           + +  F+    LE LDL  N+I   +  +       L N+  + LS N +     +S   
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQE---WRGLENIFEIYLSYNKYLQLTRNSFAL 452

Query: 112 LSSLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNKI 150
           + SL+ L L    L+           LR+L  LD+  N I
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 8/126 (6%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL------NNLKMLNLSGNSFNNSI 105
           +    F    QLE   L  N I   + +  +  L  +       +    ++S  S     
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 106 LSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKN 165
             S   L  L  LN+  N + G I       L +L+ L +  +      ++  T  ++ +
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380

Query: 166 ANLYKL 171
           + L+ L
Sbjct: 381 SPLHIL 386

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.9 bits (151), Expect = 7e-12
 Identities = 28/118 (23%), Positives = 39/118 (33%), Gaps = 9/118 (7%)

Query: 39  LDLSDTY-----GGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKM 93
           LDL                          L  L+L  N                L  LK+
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV----FKDLFELKI 564

Query: 94  LNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKID 151
           ++L  N+ N    S   +  SL+SLNL  N +          + R+L ELD+  N  D
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 26/107 (24%), Positives = 38/107 (35%), Gaps = 9/107 (8%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           L  + F     L+ L L    + +   +        L NL +L+LS N+  N     L  
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSP--FQPLRNLTILDLSNNNIANINDDMLEG 502

Query: 112 LSSLRSLNLFWNRLE-------GSIDVKELDSLRDLEELDIGGNKID 151
           L  L  L+L  N L            +  L  L  L  L++  N  D
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 39  LDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSG 98
           L L          +  + F   + L +LDL+ N ++S           +L NL+ L LS 
Sbjct: 102 LHLMSNS---IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT----QVQLENLQELLLSN 154

Query: 99  NSFNNSILSSLT--HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVS 156
           N         L     SSL+ L L  N+++         ++  L  L +   ++   +  
Sbjct: 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTE 213

Query: 157 K 157
           K
Sbjct: 214 K 214

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 5e-11
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
              +  L+LT N++            +R + L  L++  N+ +         L  L+ LN
Sbjct: 24  PTNITVLNLTHNQLRRLPAAN----FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L  N L    D K      +L EL +  N I
Sbjct: 80  LQHNELSQLSD-KTFAFCTNLTELHLMSNSI 109

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 7/123 (5%)

Query: 33  MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLK 92
              +I LDLS                  + L+ L L++NKI   +++E ++  +  ++LK
Sbjct: 120 QKNLITLDLSHN---GLSSTKLGTQVQLENLQELLLSNNKI-QALKSEELDIFA-NSSLK 174

Query: 93  MLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSI--DVKELDSLRDLEELDIGGNKI 150
            L LS N            +  L  L L   +L  S+   +    +   +  L +  +++
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 151 DKF 153
              
Sbjct: 235 STT 237

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 14/109 (12%)

Query: 52  LNASLFTPFQ--QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL 109
            + + F   +   L  LDL+ N +     +      + L  L+   L  N+  +    SL
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS----FAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 110 THLSSLRSLNLFWNRLEGSIDVKELDS--------LRDLEELDIGGNKI 150
             L ++R LNL  +  + SI +  L          L+ LE L++  N I
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 8/110 (7%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERL-----SRLNNLKMLNLSGNSFNNSIL 106
           L +        +  L+L  +     +    + ++       L  L+ LN+  N       
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346

Query: 107 SSLTHLSSLRSLNLFWNRLE-GSIDVKELDSL--RDLEELDIGGNKIDKF 153
           +  T L +L+ L+L  +     ++  +   SL    L  L++  NKI K 
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 12/107 (11%)

Query: 51  YLNASLFTPFQ--QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSS 108
            L +     F    L+ L+L+ N+I              +  L  L L+      S+   
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGC----FHAIGRLFGLFLNNVQLGPSLTEK 214

Query: 109 LT---HLSSLRSLNLFWNRLEGSIDVKELDSLRD--LEELDIGGNKI 150
           L      +S+R+L+L  ++L           L+   L  LD+  N +
Sbjct: 215 LCLELANTSIRNLSLSNSQLST-TSNTTFLGLKWTNLTMLDLSYNNL 260

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 110
            +   +F    +L+ +DL  N + +   +      +   +LK LNL  N   +       
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASV----FNNQVSLKSLNLQKNLITSVEKKVFG 605

Query: 111 H-LSSLRSLNLFWNRLEGSID 130
               +L  L++ +N  + + +
Sbjct: 606 PAFRNLTELDMRFNPFDCTCE 626

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.1 bits (167), Expect = 6e-14
 Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 12/123 (9%)

Query: 30  SNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSR 87
            N       LDLS        +L +  F  F +L+ LDL+  +I      + IE      
Sbjct: 24  DNLPFSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCEI------QTIEDGAYQS 74

Query: 88  LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGG 147
           L++L  L L+GN   +  L + + LSSL+ L      L    +   +  L+ L+EL++  
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAH 133

Query: 148 NKI 150
           N I
Sbjct: 134 NLI 136

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
           F   +QLE LD   + +    E      L    NL  L++S      +       LSSL 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR---NLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKID 151
            L +  N  + +        LR+L  LD+   +++
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.0 bits (159), Expect = 7e-13
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 4/96 (4%)

Query: 55  SLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 114
             +     L +L LT N I S          S L++L+ L     +  +     + HL +
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 115 LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L+ LN+  N ++     +   +L +LE LD+  NKI
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.4 bits (152), Expect = 6e-12
 Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 4/100 (4%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 110
                +F     LE L +  N        +     + L NL  L+LS         ++  
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 111 HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            LSSL+ LN+  N             L  L+ LD   N I
Sbjct: 492 SLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHI 530

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.4 bits (152), Expect = 6e-12
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 4/100 (4%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
               +FT  + L  LDL+  ++    E       + L++L++LN+S N+F +        
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQL----EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKID 151
           L+SL+ L+   N +  S   +       L  L++  N   
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 3/98 (3%)

Query: 53  NASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112
           NA        LE LDL+ N ++   +    +      +LK L+LS N    ++ S+   L
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSF--KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL 395

Query: 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
             L  L+   + L+   +     SLR+L  LDI     
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.7 bits (145), Expect = 4e-11
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 39  LDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSG 98
           LD   +   +      S+F   + L  LD++                + L++L++L ++G
Sbjct: 401 LDFQHSNLKQMSEF--SVFLSLRNLIYLDISHTHTRVAFNGI----FNGLSSLEVLKMAG 454

Query: 99  NSFNNSIL-SSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           NSF  + L    T L +L  L+L   +LE  +     +SL  L+ L++  N  
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNF 506

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 22/112 (19%), Positives = 31/112 (27%), Gaps = 12/112 (10%)

Query: 39  LDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSG 98
            +    Y   Y      LF     + S  L    I      E ++  S     + L L  
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI------ERVKDFSYNFGWQHLELVN 313

Query: 99  NSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
             F       L  L  L   +         +D      L  LE LD+  N +
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD------LPSLEFLDLSRNGL 359

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 110
            L+ + F     L+ L+++ N   S            LN+L++L+ S N    S    L 
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP----YKCLNSLQVLDYSLNHIMTSKKQELQ 539

Query: 111 HL-SSLRSLNLFWNRLEGSIDVKEL-DSLRDLEELDIGGNKI 150
           H  SSL  LNL  N    + + +     ++D  +L +   ++
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 581

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 9/103 (8%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           L        + L+ L++  N I S    E     S L NL+ L+LS N   +   + L  
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEY---FSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 112 LSSLR----SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L  +     SL+L  N +   I       +R L +L +  N  
Sbjct: 172 LHQMPLLNLSLDLSLNPMNF-IQPGAFKEIR-LHKLTLRNNFD 212

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 10/102 (9%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGN--SFNNSILSSL 109
                    + L+ L  T NK               L +L+ L+LS N  SF      S 
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKG------GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKID 151
              +SL+ L+L +N +           L  LE LD   + + 
Sbjct: 370 FGTTSLKYLDLSFNGVITMSS--NFLGLEQLEHLDFQHSNLK 409

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 8/107 (7%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFN---NSIL 106
           +  +       LE   L   +  +    E  ++  L  L NL +        +   + I+
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 107 SSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
                L+++ S +L    +E   D          + L++   K  +F
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQF 319

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 62  QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLF 121
           +L  L L +N  +  V    I+ L+ L   +++     +  N      + L  L +L + 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 122 WNRLE-----GSIDVKELDSLRDLEELDIGGNKI 150
             RL          +   + L ++    +    I
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 3/99 (3%)

Query: 55  SLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 114
           + F   ++L+ LD   + +    E         L  L  L++S  +           L+S
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSA---FLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 115 LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           L +L +  N  + +       +  +L  LD+   ++++ 
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.4 bits (160), Expect = 5e-13
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 9/101 (8%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL 109
           L +  F+ F +L+ LDL+  +I      E IE      L++L  L L+GN   +    S 
Sbjct: 47  LKSYSFSNFSELQWLDLSRCEI------ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100

Query: 110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           + L+SL +L     +L  S++   +  L  L++L++  N I
Sbjct: 101 SGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFI 140

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 7/112 (6%)

Query: 39  LDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSG 98
           LD+S T           +F     L +L +  N       +      +   NL  L+LS 
Sbjct: 429 LDISYTN---TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV---FANTTNLTFLDLSK 482

Query: 99  NSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
                        L  L+ LN+  N L   +D    + L  L  LD   N+I
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNLL-FLDSSHYNQLYSLSTLDCSFNRI 533

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 4/99 (4%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           +    +     L +L LT N I           L+   +L+ L        +     +  
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPI-QSFSPGSFSGLT---SLENLVAVETKLASLESFPIGQ 126

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L +L+ LN+  N +          +L +L  +D+  N I
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.0 bits (151), Expect = 6e-12
 Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
             +++F     L  LDL+  ++              L+ L++LN+S N+      S    
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLEQISWGV----FDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKID 151
           L SL +L+  +NR+E +         + L   ++  N + 
Sbjct: 520 LYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 6/99 (6%)

Query: 53  NASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSS-LTH 111
             S F   ++L  LD++        +         L +L  L ++GNSF ++ LS+   +
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGI----FLGLTSLNTLKMAGNSFKDNTLSNVFAN 471

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            ++L  L+L   +LE  I     D+L  L+ L++  N +
Sbjct: 472 TTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNL 509

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 8/122 (6%)

Query: 30  SNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLN 89
           +  +  + +L L+   G       +        L  LDL+ N ++              N
Sbjct: 324 TLDLPFLKSLTLTMNKG-----SISFKKVALPSLSYLDLSRNALSF--SGCCSYSDLGTN 376

Query: 90  NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK 149
           +L+ L+LS N     + ++   L  L+ L+   + L+   +     SL  L  LDI    
Sbjct: 377 SLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 150 ID 151
             
Sbjct: 436 TK 437

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 10/109 (9%)

Query: 50  WYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSIL-SS 108
              +   F+    LE+L   + K+AS         + +L  LK LN++ N  ++  L + 
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFP----IGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 109 LTHLSSLRSLNLFWNRLEGSIDVKELDSLRDL----EELDIGGNKIDKF 153
            ++L++L  ++L +N ++ +I V +L  LR+       LD+  N ID  
Sbjct: 149 FSNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPIDFI 196

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
               +++DL+ N +            S  + L+ L+LS          +   L  L +L 
Sbjct: 31  PSSTKNIDLSFNPLKILKSYS----FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L  N ++ S        L  LE L     K+
Sbjct: 87  LTGNPIQ-SFSPGSFSGLTSLENLVAVETKL 116

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 10/104 (9%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           L          L+SL LT NK           +   L +L  L+LS N+ + S   S + 
Sbjct: 319 LKQFPTLDLPFLKSLTLTMNKG------SISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 112 L--SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           L  +SLR L+L +N     I       L +L+ LD   + + + 
Sbjct: 373 LGTNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRV 414

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 12/127 (9%)

Query: 39  LDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSG 98
           L   +T       L +        L+ L++  N I SC         S L NL  ++LS 
Sbjct: 109 LVAVETK---LASLESFPIGQLITLKKLNVAHNFIHSCKLPAY---FSNLTNLVHVDLSY 162

Query: 99  NSFNNSILSSLTHLSSLR----SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFV 154
           N      ++ L  L        SL++  N ++  I  +    ++ L EL + GN     +
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIK-LHELTLRGNFNSSNI 220

Query: 155 VSKGTTN 161
           +     N
Sbjct: 221 MKTCLQN 227

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 8e-09
 Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 12/101 (11%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
            +   F     + ++ L    I        +E + +    + L++               
Sbjct: 276 DDIVKFHCLANVSAMSLAGVSIKY------LEDVPKHFKWQSLSIIRCQLKQ---FPTLD 326

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK 152
           L  L+SL L  N+   S       +L  L  LD+  N +  
Sbjct: 327 LPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSRNALSF 364

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 62  QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLF 121
           +L  L L  N  +S +    ++ L+ L+  +++        N  +   + +  L  + + 
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 122 WNRLEG----SIDVKELDSLRDLEELDIGGNKIDKF 153
             RL      S D+ +   L ++  + + G  I   
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 11/106 (10%), Positives = 38/106 (35%), Gaps = 7/106 (6%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKM--LNLSGNSFNNSILS 107
           +  +       L    L   +       E  E   +  L ++ +    L+  +  +  + 
Sbjct: 220 IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV 279

Query: 108 SLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
               L+++ +++L    ++    ++++      + L I   ++ +F
Sbjct: 280 KFHCLANVSAMSLAGVSIK---YLEDVPKHFKWQSLSIIRCQLKQF 322

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.6 bits (160), Expect = 4e-13
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 110
            + AS F   +QL+ L+L        ++ E       L NL++L+L  +        +  
Sbjct: 38  TVTASSFPFLEQLQLLELGSQYTPLTIDKEA---FRNLPNLRILDLGSSKIYFLHPDAFQ 94

Query: 111 HLSSLRSLNLFWNRL-EGSIDVKELDSLRDLEELDIGGNKI 150
            L  L  L L++  L +  +      +L+ L  LD+  N+I
Sbjct: 95  GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 63.3 bits (154), Expect = 3e-12
 Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 12/124 (9%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSS- 108
           ++   F     L  LDL  +KI        +       L +L  L L     ++++L   
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYF------LHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117

Query: 109 -LTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNAN 167
              +L +L  L+L  N++           L  L+ +D   N+I    V +     ++   
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL--VCEHELEPLQGKT 175

Query: 168 LYKL 171
           L   
Sbjct: 176 LSFF 179

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.0 bits (143), Expect = 8e-11
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           LN+ +F   + L+ L+L  NKI    +         L+NL++LNLS N       S+   
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADEA----FYGLDNLQVLNLSYNLLGELYSSNFYG 336

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           L  +  ++L  N +   I  +    L  L+ LD+  N +   
Sbjct: 337 LPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTI 377

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.4 bits (131), Expect = 3e-09
 Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 15/145 (10%)

Query: 33  MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNN-- 90
           + +V  +DL          +    F   ++L++LDL DN + +      I  +    N  
Sbjct: 337 LPKVAYIDLQKN---HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKL 393

Query: 91  ---------LKMLNLSGNSFNN-SILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDL 140
                      +++LS N   N  IL  L  +  L+ L L  NR       +       L
Sbjct: 394 VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL 453

Query: 141 EELDIGGNKIDKFVVSKGTTNTIKN 165
           E+L +G N +     ++   +  + 
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEG 478

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.7 bits (129), Expect = 5e-09
 Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 11/119 (9%)

Query: 39  LDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSG 98
           L L      +   L    F   + L  LDL+ N+I S   +       +LN+LK ++ S 
Sbjct: 102 LRLYFCGLSDA-VLKDGYFRNLKALTRLDLSKNQIRSLYLHPS---FGKLNSLKSIDFSS 157

Query: 99  NSFNNSILSSLTHLS--SLRSLNLFWNRLEGSIDVKELDSL-----RDLEELDIGGNKI 150
           N         L  L   +L   +L  N L   + V     +       LE LD+ GN  
Sbjct: 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.3 bits (128), Expect = 8e-09
 Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 13/118 (11%)

Query: 33  MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLK 92
           +  +  L+L+     +   +    F     L+ L+L+ N +              L  + 
Sbjct: 289 LKDLKVLNLAYNKINK---IADEAFYGLDNLQVLNLSYNLL----GELYSSNFYGLPKVA 341

Query: 93  MLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            ++L  N        +   L  L++L+L  N L        +  +  + ++ + GNK+
Sbjct: 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT------TIHFIPSIPDIFLSGNKL 393

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 70  DNKIASCVENEGIERL-SRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGS 128
           D +IA       + ++   LN  + L LS N       SS   L  L+ L L       +
Sbjct: 5   DGRIAFY-RFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 129 IDVKELDSLRDLEELDIGGNKIDKF 153
           ID +   +L +L  LD+G +KI   
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFL 88

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.6 bits (121), Expect = 5e-08
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 4/97 (4%)

Query: 55  SLFTPFQQLESLDLTDNKIASCVENE-GIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 113
              +    LE L L +N +    E E   +    L++L++L L+ N  N+      +HL+
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504

Query: 114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           +LR L+L  NRL     +   D   +LE LDI  N++
Sbjct: 505 ALRGLSLNSNRLT---VLSHNDLPANLEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.6 bits (121), Expect = 6e-08
 Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 3/102 (2%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
             A        +       + I    +      L+R + ++ L+LS     +        
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKD-PDQNTFAGLARSS-VRHLDLSHGFVFSLNSRVFET 288

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           L  L+ LNL +N++   I  +    L +L+ L++  N + + 
Sbjct: 289 LKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGEL 329

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 12/119 (10%)

Query: 33  MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLK 92
           +S +  L L+  Y      L   +F+    L  L L  N++        +       NL+
Sbjct: 479 LSHLQVLYLNHNYLNS---LPPGVFSHLTALRGLSLNSNRLTV------LSHNDLPANLE 529

Query: 93  MLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKID 151
           +L++S N        +     SL  L++  N+     ++    +  +   + I G   D
Sbjct: 530 ILDISRNQLLA---PNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPAD 585

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 19/121 (15%)

Query: 51  YLNASLFTPFQQ--LESLDLTDNKIASCVENEGIERLSRLNN--LKMLNLSGNSFNNSIL 106
            +      P Q   L    L  N + S V  +  + ++   N  L++L++SGN +   I 
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221

Query: 107 S------------SLTHLSSLRSLNLFWNRLEGSIDVKELDSLRD--LEELDIGGNKIDK 152
                        SL     +      ++ ++   D      L    +  LD+    +  
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFS 280

Query: 153 F 153
            
Sbjct: 281 L 281

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.5 bits (158), Expect = 7e-13
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
                +L+ L++  N+I        I  L+ L+ L  L L+ N   N  +  +  L++L 
Sbjct: 261 VKDLTKLKMLNVGSNQI------SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK 152
           +L L  N +    D++ L SL  ++  D     I K
Sbjct: 315 TLFLSQNHIT---DIRPLASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.7 bits (156), Expect = 1e-12
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
                QL  L++  N+I        I  +  L  LKMLN+  N  ++  +S L +LS L 
Sbjct: 239 LANLSQLTWLEIGTNQI------SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLN 290

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           SL L  N+L  + D++ +  L +L  L +  N I
Sbjct: 291 SLFLNNNQLG-NEDMEVIGGLTNLTTLFLSQNHI 323

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.6 bits (153), Expect = 3e-12
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 10/94 (10%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
                 L  L L ++ I        I  L+ L  +  LNL  N  N S LS L++++ L 
Sbjct: 106 LQNLTNLRELYLNEDNI------SDISPLANLTKMYSLNLGANH-NLSDLSPLSNMTGLN 158

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            L +  ++++   DV  + +L DL  L +  N+I
Sbjct: 159 YLTVTESKVK---DVTPIANLTDLYSLSLNYNQI 189

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.4 bits (150), Expect = 8e-12
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 11/94 (11%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
                 L SL L  N+I      E I  L+ L +L       N   +  ++ + +++ L 
Sbjct: 173 IANLTDLYSLSLNYNQI------EDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLN 224

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           SL +  N++    D+  L +L  L  L+IG N+I
Sbjct: 225 SLKIGNNKIT---DLSPLANLSQLTWLEIGTNQI 255

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 2e-11
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
              LE L+L  N+I        I  LS L  L  L +  N    + +S+L +L++LR L 
Sbjct: 65  LTNLEYLNLNGNQI------TDISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELY 116

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L  + +    D+  L +L  +  L++G N  
Sbjct: 117 LNEDNIS---DISPLANLTKMYSLNLGANHN 144

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.2 bits (147), Expect = 2e-11
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 62  QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLF 121
            L  L +T++K+      + +  ++ L +L  L+L+ N   +  +S L  L+SL     +
Sbjct: 156 GLNYLTVTESKV------KDVTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAY 207

Query: 122 WNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
            N++    D+  + ++  L  L IG NKI   
Sbjct: 208 VNQIT---DITPVANMTRLNSLKIGNNKITDL 236

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.2 bits (147), Expect = 2e-11
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 10/97 (10%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
                ++ SL+L  N   S      +  LS +  L  L ++ +   +  ++ + +L+ L 
Sbjct: 128 LANLTKMYSLNLGANHNLS-----DLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLY 180

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           SL+L +N++E   D+  L SL  L       N+I   
Sbjct: 181 SLSLNYNQIE---DISPLASLTSLHYFTAYVNQITDI 214

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.2 bits (147), Expect = 2e-11
 Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 10/96 (10%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
            +   +L +L +  NKI        I  L  L NL+ L L+ ++ ++  +S L +L+ + 
Sbjct: 84  LSNLVKLTNLYIGTNKITD------ISALQNLTNLRELYLNEDNISD--ISPLANLTKMY 135

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK 152
           SLNL  N     +    L ++  L  L +  +K+  
Sbjct: 136 SLNLGANHNLSDL--SPLSNMTGLNYLTVTESKVKD 169

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 8e-11
 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 11/96 (11%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 120
            +L SL + +NKI        +  L+ L+ L  L +  N  ++  ++++  L+ L+ LN+
Sbjct: 221 TRLNSLKIGNNKI------TDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNV 272

Query: 121 FWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVS 156
             N++    D+  L++L  L  L +  N++    + 
Sbjct: 273 GSNQIS---DISVLNNLSQLNSLFLNNNQLGNEDME 305

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 6e-10
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
             +     L    +        +     L ++  L ++G    +  +  + +L++L  LN
Sbjct: 21  LAEGIRAVLQKASV------TDVVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLN 72

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L  N++    D+  L +L  L  L IG NKI
Sbjct: 73  LNGNQIT---DISPLSNLVKLTNLYIGTNKI 100

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 11/88 (12%)

Query: 63  LESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFW 122
             +L      I        I   + L       L   S  +  + +   L S+  L +  
Sbjct: 2   AATLATLPAPINQ------IFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAG 53

Query: 123 NRLEGSIDVKELDSLRDLEELDIGGNKI 150
            ++     ++ ++ L +LE L++ GN+I
Sbjct: 54  EKVA---SIQGIEYLTNLEYLNLNGNQI 78

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 55  SLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILS-SLTHLS 113
           S+F   + L  LD++         N      + L++L++L ++GNSF  + L    T L 
Sbjct: 120 SVFLSLRNLIYLDISHTHTRV-AFN---GIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175

Query: 114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           +L  L+L   +LE  +     +SL  L+ L++  N  
Sbjct: 176 NLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNF 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.2 bits (149), Expect = 9e-12
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
           F   +QLE LD   + +   +    +     L NL  L++S      +       LSSL 
Sbjct: 97  FLGLEQLEHLDFQHSNLKQ-MSEFSV--FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKID 151
            L +  N  + +        LR+L  LD+   +++
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 3/99 (3%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           L   +F    QL  L L+ N ++               +LK L+LS N    ++ S+   
Sbjct: 43  LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS--DFGTTSLKYLDLSFNGVI-TMSSNFLG 99

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L  L  L+   + L+   +     SLR+L  LDI     
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 4/100 (4%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 110
                +F     LE L +  N        +     + L NL  L+LS         ++  
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQLEQLSPTAFN 196

Query: 111 HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            LSSL+ LN+  N    S+D      L  L+ LD   N I
Sbjct: 197 SLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.8 bits (135), Expect = 7e-10
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 110
                +FT  + L  LDL+  ++   +        + L++L++LN+S N+F +       
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLEQ-LSPTA---FNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 111 HLSSLRSLNLFWNRLEGSIDVKELDSLRD-LEELDIGGNKID 151
            L+SL+ L+   N +  +   +EL      L  L++  N   
Sbjct: 221 CLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 8/93 (8%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT--HLSSLRS 117
                 L+L  NK+ S           +L  L  L+LS N  +     S +    +SL+ 
Sbjct: 27  PSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 118 LNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L+L +N +  ++       L  LE LD   + +
Sbjct: 83  LDLSFNGVI-TMS-SNFLGLEQLEHLDFQHSNL 113

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.6 bits (155), Expect = 2e-12
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 6/99 (6%)

Query: 53  NASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILS-SLTH 111
             S+F   + L  LD++           GI   + L++L++L ++GNSF  + L    T 
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVA--FNGI--FNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L +L  L+L   +LE  +     +SL  L+ L++  N++
Sbjct: 469 LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           L +  F  F +L+ LDL+  +I + +E+        L++L  L L+GN   +  L + + 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQT-IEDGA---YQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           LSSL+ L      L  S++   +  L+ L+EL++  N I
Sbjct: 99  LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLI 136

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.0 bits (151), Expect = 6e-12
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 3/96 (3%)

Query: 55  SLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 114
           S F   +QLE LD   + +    E         L NL  L++S      +       LSS
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSV---FLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 115 LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L  L +  N  + +        LR+L  LD+   ++
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
               +F     LE L +  N        +     + L NL  L+LS         ++   
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKID 151
           LSSL+ LN+  N+L+ S+     D L  L+++ +  N  D
Sbjct: 493 LSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 4/102 (3%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           +    +     L +L LT N I S     G    S L++L+ L     +  +     + H
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQS--LALGA--FSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           L +L+ LN+  N ++     +   +L +LE LD+  NKI   
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 7e-11
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
                 LE LDL+ N ++   +    +      +LK L+LS N    ++ S+   L  L 
Sbjct: 343 EVDLPSLEFLDLSRNGLSF--KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 399

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            L+   + L+   +     SLR+L  LDI     
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 7e-09
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 5/94 (5%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
               ++LDL+ N +                 L++L+LS          +   LS L +L 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           L  N ++ S+ +     L  L++L      +   
Sbjct: 83  LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASL 115

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 10/99 (10%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSIL--SSLTHLSS 114
               + L+ L  T NK  +            L +L+ L+LS N  +       S    +S
Sbjct: 321 TLKLKSLKRLTFTSNKGGN------AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 115 LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           L+ L+L +N +  ++       L  LE LD   + + + 
Sbjct: 375 LKYLDLSFNGVI-TMS-SNFLGLEQLEHLDFQHSNLKQM 411

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 9/103 (8%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           L        + L+ L++  N I S    E     S L NL+ L+LS N   +   + L  
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEY---FSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 112 LSSLR----SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L  +     SL+L  N +   I       +R L +L +  N  
Sbjct: 172 LHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR-LHKLTLRNNFD 212

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 25/131 (19%), Positives = 35/131 (26%), Gaps = 18/131 (13%)

Query: 39  LDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLN--------- 89
            +    Y   Y      LF     + S  L    I    +         L          
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319

Query: 90  ------NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEG-SIDVKELDSLRDLEE 142
                 +LK L  + N   N    S   L SL  L+L  N L       +       L+ 
Sbjct: 320 PTLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 143 LDIGGNKIDKF 153
           LD+  N +   
Sbjct: 378 LDLSFNGVITM 388

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
               +FT  + L  LDL+  ++   +        + L++L++LN++ N   +        
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQL-EQLSPT---AFNSLSSLQVLNMASNQLKSVPDGIFDR 516

Query: 112 LSSLRSLNLFWNRLEGS 128
           L+SL+ + L  N  + S
Sbjct: 517 LTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 3/98 (3%)

Query: 55  SLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKM-LNLSGNSFNNSILSSLTHLS 113
             F+    LE LDL+ NKI   +    +  L ++  L + L+LS N  N     +   + 
Sbjct: 143 EYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKID 151
            L  L L  N    ++    +  L  LE   +   +  
Sbjct: 202 -LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 62  QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLF 121
           +L  L L +N  +  V    I+ L+ L   +++     +  N      + L  L +L + 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 122 WNRLE-----GSIDVKELDSLRDLEELDIGGNKIDKF 153
             RL          +   + L ++    +    I++ 
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 61.3 bits (149), Expect = 2e-12
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 56  LFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 115
           L   F  LE L L +  + S      +  L +L  LK L LS N     +      L +L
Sbjct: 44  LTAEFVNLEFLSLINVGLIS------VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 116 RSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
             LNL  N+L+    ++ L  L  L+ LD+   ++
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.0 bits (117), Expect = 6e-08
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
              +  L L + K     + +     +   NL+ L+L         +S+L  L  L+ L 
Sbjct: 23  PAAVRELVLDNCKSN---DGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLE 77

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           L  NR+         + L +L  L++ GNK+   
Sbjct: 78  LSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDI 110

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.6 bits (154), Expect = 2e-12
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 7/91 (7%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
              +  LDL+ N++ +         L+ L  L++L  S N+  N  +  + +L  L+ L 
Sbjct: 462 LLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNALEN--VDGVANLPRLQELL 514

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L  NRL+ S  ++ L S   L  L++ GN +
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.2 bits (153), Expect = 3e-12
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 10/95 (10%)

Query: 59  PFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSL 118
            +  +  L L    +        +  L +L  +  L+LS N    ++  +L  L  L  L
Sbjct: 439 EYADVRVLHLAHKDLTV------LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVL 491

Query: 119 NLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
               N LE   +V  + +L  L+EL +  N++ + 
Sbjct: 492 QASDNALE---NVDGVANLPRLQELLLCNNRLQQS 523

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.1 bits (106), Expect = 4e-06
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNN-SILSSLTHLSSL 115
               + LE L  +DN + +      ++ ++ L  L+ L L  N     + +  L     L
Sbjct: 482 LAALRCLEVLQASDNALEN------VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 116 RSLNLFWNRLEGSIDVKE--LDSLRDLEELD 144
             LNL  N L     ++E   + L  +  + 
Sbjct: 536 VLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 7/100 (7%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 110
           Y++   F     L+ L+L    I        +  L+ L  L+ L +SGN F      S  
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIKD------MPNLTPLVGLEELEMSGNHFPEIRPGSFH 239

Query: 111 HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            LSSL+ L +  +++   I+    D L  L EL++  N +
Sbjct: 240 GLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 12/105 (11%)

Query: 52  LNASLFTPFQQLESLDLTD-NKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSS 108
           + +  F     L  LDL +  K+        I       L NLK LNL   +  +  + +
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEY------ISEGAFEGLFNLKYLNLGMCNIKD--MPN 213

Query: 109 LTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           LT L  L  L +  N     I       L  L++L +  +++   
Sbjct: 214 LTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLI 257

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSS 108
            +    F     L +L+L DN +        I       L+ L+ L L  N   +    +
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTV------IPSGAFEYLSKLRELWLRNNPIESIPSYA 166

Query: 109 LTHLSSLRSLNLF-WNRLEGSIDVKELDSLRDLEELDIGGNKI 150
              + SL  L+L    +LE  I     + L +L+ L++G   I
Sbjct: 167 FNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNI 208

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 19/104 (18%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL 109
           + A  F     LE L L  N I        IE    + L +L  L L  N      L+ +
Sbjct: 90  IQADTFRHLHHLEVLQLGRNSIRQ------IEVGAFNGLASLNTLELFDNW-----LTVI 138

Query: 110 -----THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGN 148
                 +LS LR L L  N +E SI     + +  L  LD+G  
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGEL 181

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 90  NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK 149
           N + LNL  N+       +  HL  L  L L  N +   I+V   + L  L  L++  N 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 150 I 150
           +
Sbjct: 135 L 135

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 50  WYLNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILS 107
             +    F     L+ L + +++++       IER     L +L  LNL+ N+ ++    
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQVSL------IERNAFDGLASLVELNLAHNNLSSLPHD 284

Query: 108 SLTHLSSLRSLNLFWN 123
             T L  L  L+L  N
Sbjct: 285 LFTPLRYLVELHLHHN 300

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 60.5 bits (147), Expect = 2e-12
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%)

Query: 56  LFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 115
           L   F++LE L   +  + S      I  L +LN LK L LS N  +  +        +L
Sbjct: 37  LTDEFEELEFLSTINVGLTS------IANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 116 RSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
             LNL  N+++    ++ L  L +L+ LD+   ++
Sbjct: 91  THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
              ++ L L +++     E +          L+ L+        + +++L  L+ L+ L 
Sbjct: 16  PSDVKELVLDNSRSN---EGKLEGLTDEFEELEFLSTINVGL--TSIANLPKLNKLKKLE 70

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           L  NR+         +   +L  L++ GNKI   
Sbjct: 71  LSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDL 103

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 12/99 (12%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
             ASL      ++ LDL+ N ++     +    L+    L++LNLS N         L  
Sbjct: 25  ALASLRQSAWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYE--TLDLES 78

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           LS+LR+L+L  N ++      EL     +E L    N I
Sbjct: 79  LSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNI 111

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 9/99 (9%)

Query: 53  NASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112
            A L      LE L+L  N I        ++       LK L+LS N     +       
Sbjct: 161 FAELAASSDTLEHLNLQYNFIYD------VKGQVVFAKLKTLDLSSNKL-AFMGPEFQSA 213

Query: 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKID 151
           + +  ++L  N+L   I+ K L   ++LE  D+ GN   
Sbjct: 214 AGVTWISLRNNKLV-LIE-KALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 7/90 (7%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 120
            + +   +TD+ +   + +          N+K L+LSGN  +    + L   + L  LNL
Sbjct: 10  NRYKIEKVTDSSLKQALASL----RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 121 FWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
             N L    +  +L+SL  L  LD+  N +
Sbjct: 66  SSNVLY---ETLDLESLSTLRTLDLNNNYV 92

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 23/118 (19%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNN-SILSSLT 110
           ++A+   PF +LE L+L+ N +           L  L+ L+ L+L+ N      +  S+ 
Sbjct: 49  ISAADLAPFTKLELLNLSSNVLYE------TLDLESLSTLRTLDLNNNYVQELLVGPSIE 102

Query: 111 HL---------------SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
            L                  +++ L  N++   +   +      ++ LD+  N+ID  
Sbjct: 103 TLHAANNNISRVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTV 159

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 88  LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGG 147
            N  K+  ++ +S   ++ S      +++ L+L  N L   I   +L     LE L++  
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 148 NKI 150
           N +
Sbjct: 68  NVL 70

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 12/106 (11%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERL------------SRLNNLKMLNLSGNSFNNS 104
                 L +LDL +N +   +    IE L            SR    K + L+ N     
Sbjct: 76  LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135

Query: 105 ILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
                   S ++ L+L  N ++     +   S   LE L++  N I
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 6/92 (6%)

Query: 58  TPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRS 117
             F +L++LDL+ NK+A  +  E          +  ++L  N     I  +L    +L  
Sbjct: 188 VVFAKLKTLDLSSNKLAF-MGPE----FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241

Query: 118 LNLFWNRLEGSIDVKELDSLRDLEELDIGGNK 149
            +L  N              + ++ +     K
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 63.2 bits (154), Expect = 3e-12
 Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 23/142 (16%)

Query: 22  CQWE--RVECSNTM---------SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTD 70
           C  +   V C             +    LDL          LN   F  F  LE L+L +
Sbjct: 9   CSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT---LNQDEFASFPHLEELELNE 65

Query: 71  NKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGS 128
           N +++      +E    + L NL+ L L  N      L   T LS+L  L++  N++   
Sbjct: 66  NIVSA------VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-I 118

Query: 129 IDVKELDSLRDLEELDIGGNKI 150
           +       L +L+ L++G N +
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDL 140

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 110
            L   +F     L+SL++ DN +   + +      S LN+L+ L L   +  +    +L+
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDL-VYISHRA---FSGLNSLEQLTLEKCNLTSIPTEALS 173

Query: 111 HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           HL  L  L L    +  +I       L  L+ L+I     
Sbjct: 174 HLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPY 212

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           +     +    L  L L    I + + +       RL  LK+L +S   + +++  +  +
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNI-NAIRDYS---FKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
             +L SL++    L  ++    +  L  L  L++  N I
Sbjct: 223 GLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPI 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 63  LESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFW 122
           L SL +T   + + V    +  L     L+ LNLS N  +    S L  L  L+ + L  
Sbjct: 226 LTSLSITHCNLTA-VPYLAVRHLV---YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281

Query: 123 NRLEGSIDVKELDSLRDLEELDIGGNKI 150
            +L   ++      L  L  L++ GN++
Sbjct: 282 GQLA-VVEPYAFRGLNYLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.0 bits (130), Expect = 4e-09
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 54  ASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSLTH 111
                    L  L+L+ N I++      IE   L  L  L+ + L G         +   
Sbjct: 241 YLAVRHLVYLRFLNLSYNPIST------IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L+ LR LN+  N+L  +++     S+ +LE L +  N +
Sbjct: 295 LNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSS 108
            +  S+     +L+ + L   ++A       +E      LN L++LN+SGN       S 
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLAV------VEPYAFRGLNYLRVLNVSGNQLTTLEESV 315

Query: 109 LTHLSSLRSLNLFWNRL 125
              + +L +L L  N L
Sbjct: 316 FHSVGNLETLILDSNPL 332

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.8 bits (152), Expect = 4e-12
 Identities = 32/97 (32%), Positives = 42/97 (43%), Gaps = 11/97 (11%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
                 +  L L  NK+        I+ L+ L NL  L L  N   +  LSSL  L  L+
Sbjct: 61  IQYLPNVTKLFLNGNKLTD------IKPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLK 112

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           SL+L  N +    D+  L  L  LE L +G NKI   
Sbjct: 113 SLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDI 146

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.3 bits (148), Expect = 1e-11
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 11/91 (12%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
              ++ +   ++ I S      ++ +  L N+  L L+GN    + +  LT+L +L  L 
Sbjct: 42  LNSIDQIIANNSDIKS------VQGIQYLPNVTKLFLNGN--KLTDIKPLTNLKNLGWLF 93

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L  N+++   D+  L  L+ L+ L +  N I
Sbjct: 94  LDENKIK---DLSSLKDLKKLKSLSLEHNGI 121

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.3 bits (148), Expect = 1e-11
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
            T  + L  L L +NKI        +  L  L  LK L+L  N  ++  ++ L HL  L 
Sbjct: 83  LTNLKNLGWLFLDENKIKD------LSSLKDLKKLKSLSLEHNGISD--INGLVHLPQLE 134

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK 152
           SL L  N++    D+  L  L  L+ L +  N+I  
Sbjct: 135 SLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISD 167

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.5 bits (146), Expect = 2e-11
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 12/122 (9%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
             QLESL L +NKI        I  LSRL  L  L+L  N  ++  +  L  L+ L++L 
Sbjct: 130 LPQLESLYLGNNKITD------ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLY 181

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF 179
           L  N +    D++ L  L++L+ L++   +     ++  +   + N  +    G      
Sbjct: 182 LSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN-TVKNTDGSLVTPE 237

Query: 180 II 181
           II
Sbjct: 238 II 239

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.7 bits (144), Expect = 4e-11
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 11/92 (11%)

Query: 62  QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLF 121
           +L+SL L  N I+       I  L  L  L+ L L  N    + ++ L+ L+ L +L+L 
Sbjct: 110 KLKSLSLEHNGISD------INGLVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLE 161

Query: 122 WNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
            N++    D+  L  L  L+ L +  N I   
Sbjct: 162 DNQIS---DIVPLAGLTKLQNLYLSKNHISDL 190

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.8 bits (139), Expect = 2e-10
 Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 11/94 (11%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
           F +    +L    +            + LN++  +  + +   +  +  + +L ++  L 
Sbjct: 20  FAETIKDNLKKKSVTD------AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 71

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           L  N+L    D+K L +L++L  L +  NKI   
Sbjct: 72  LNGNKLT---DIKPLTNLKNLGWLFLDENKIKDL 102

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.3 bits (130), Expect = 3e-09
 Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 11/91 (12%)

Query: 63  LESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFW 122
           +         I        I            NL   S  +    +   L+S+  +    
Sbjct: 1   MGETITVSTPIKQ------IFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANN 52

Query: 123 NRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           + ++    V+ +  L ++ +L + GNK+   
Sbjct: 53  SDIK---SVQGIQYLPNVTKLFLNGNKLTDI 80

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 6/87 (6%)

Query: 55  SLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 114
                  +L++L L+ N I+       +  L+ L NL +L L      N  ++  ++L  
Sbjct: 169 VPLAGLTKLQNLYLSKNHISD------LRALAGLKNLDVLELFSQECLNKPINHQSNLVV 222

Query: 115 LRSLNLFWNRLEGSIDVKELDSLRDLE 141
             ++      L     + +        
Sbjct: 223 PNTVKNTDGSLVTPEIISDDGDYEKPN 249

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.5 bits (152), Expect = 5e-12
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 12/105 (11%)

Query: 52  LNASLFTPFQQLESLDLTD-NKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSS 108
           + +  F     L  LDL +  +++       I       L+NL+ LNL+  +     + +
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSY------ISEGAFEGLSNLRYLNLAMCNLRE--IPN 202

Query: 109 LTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           LT L  L  L+L  N L  +I       L  L++L +  ++I   
Sbjct: 203 LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVI 246

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 7/100 (7%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 110
           Y++   F     L  L+L    +        I  L+ L  L  L+LSGN  +     S  
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLRE------IPNLTPLIKLDELDLSGNHLSAIRPGSFQ 228

Query: 111 HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            L  L+ L +  ++++  I+    D+L+ L E+++  N +
Sbjct: 229 GLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.1 bits (138), Expect = 4e-10
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 10/105 (9%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSS 108
            +    F     L +L+L DN++ +      I       L+ LK L L  N   +    +
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTT------IPNGAFVYLSKLKELWLRNNPIESIPSYA 155

Query: 109 LTHLSSLRSLNLF-WNRLEGSIDVKELDSLRDLEELDIGGNKIDK 152
              + SLR L+L    RL   I     + L +L  L++    + +
Sbjct: 156 FNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLRE 199

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
            TP  +L+ LDL+ N +++            L +L+ L +  +       ++  +L SL 
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPGS----FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGN 148
            +NL  N L   +       L  LE + +  N
Sbjct: 259 EINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
                 L+L +N+I     N        L +L++L LS N      + +   L++L +L 
Sbjct: 63  STNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           LF NRL  +I       L  L+EL +  N I
Sbjct: 119 LFDNRLT-TIPNGAFVYLSKLKELWLRNNPI 148

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 19/104 (18%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL 109
           +  + F   + LE L L+ N I +      IE    + L NL  L L  N      L+++
Sbjct: 79  IKVNSFKHLRHLEILQLSRNHIRT------IEIGAFNGLANLNTLELFDNR-----LTTI 127

Query: 110 -----THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGN 148
                 +LS L+ L L  N +E SI     + +  L  LD+G  
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGEL 170

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 8/75 (10%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSS 108
            +    F     L+ L +  ++I        IER     L +L  +NL+ N+        
Sbjct: 221 AIRPGSFQGLMHLQKLWMIQSQIQV------IERNAFDNLQSLVEINLAHNNLTLLPHDL 274

Query: 109 LTHLSSLRSLNLFWN 123
            T L  L  ++L  N
Sbjct: 275 FTPLHHLERIHLHHN 289

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 60.1 bits (146), Expect = 6e-12
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 56  LFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 115
           L     Q +++D +DN+I        ++    L  LK L ++ N            L  L
Sbjct: 37  LGATLDQFDAIDFSDNEIRK------LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 116 RSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
             L L  N L    D+  L SL+ L  L I  N +
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 10/93 (10%)

Query: 62  QLESLDLTDNKIASCVENEGIERL-SRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 120
           +   LDL   KI        IE L + L+    ++ S N      L     L  L++L +
Sbjct: 20  RDRELDLRGYKIPV------IENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLLV 71

Query: 121 FWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
             NR+   I      +L DL EL +  N + + 
Sbjct: 72  NNNRIC-RIGEGLDQALPDLTELILTNNSLVEL 103

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGN---SFNNSILSS 108
           +   L      L  L LT+N +    +   ++ L+ L +L  L +  N   +  +  L  
Sbjct: 79  IGEGLDQALPDLTELILTNNSLVELGD---LDPLASLKSLTYLCILRNPVTNKKHYRLYV 135

Query: 109 LTHLSSLRSLN 119
           +  +  +R L+
Sbjct: 136 IYKVPQVRVLD 146

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 9e-12
 Identities = 16/95 (16%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 61  QQLESLDLTDNKIASCVENEG----IERLSRLNNLKMLNLSGNSFNN-SILSSLTHLSSL 115
            +++ +++  N+  S  + +     +        ++++ +  N+     + +SL  +  L
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 116 RSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
             L   +N+LEG +      S   L  L++  N+I
Sbjct: 333 GMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQI 365

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 120
           ++L  L+   N++        +        L  LNL+ N       +       + +L+ 
Sbjct: 330 KKLGMLECLYNQL-----EGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384

Query: 121 FWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
             N+L+   ++ +  S+  +  +D   N+I
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 9/99 (9%)

Query: 61  QQLESLDLTDNKIASCVEN---EGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRS 117
             + ++D + N+I S              +  N+  +NLS N  +       +  S L S
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

Query: 118 LNLFWNRLEG------SIDVKELDSLRDLEELDIGGNKI 150
           +NL  N L          + +   +   L  +D+  NK+
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 18/125 (14%), Positives = 44/125 (35%), Gaps = 11/125 (8%)

Query: 54  ASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFN-------NSIL 106
           A+     +Q+E+L    NK+              ++ +  ++ S N          + + 
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDA---KSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 107 SSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNA 166
            +     ++ S+NL  N++      +   +   L  +++ GN + +   +          
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485

Query: 167 NLYKL 171
           N Y L
Sbjct: 486 NTYLL 490

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 11/101 (10%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFN-------NSILSSLTHL 112
              + S++L++N+I+   +       S  + L  +NL GN               +  + 
Sbjct: 432 GINVSSINLSNNQISKFPKEL----FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
             L S++L +N+L    D     +L  L  +D+  N   KF
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF 528

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 9e-09
 Identities = 16/139 (11%), Positives = 36/139 (25%), Gaps = 14/139 (10%)

Query: 19  TDCCQWER---VECSNTMSRVIALDLSDTYGGEYWYLNASL---FTPFQQLESLDLTDNK 72
            +   W     V  ++   RV  L L           +  +        +LE L L  + 
Sbjct: 64  KELDMWGAQPGVSLNS-NGRVTGLSLEGFG------ASGRVPDAIGQLTELEVLALGSHG 116

Query: 73  IASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVK 132
                   G + +S   + +        +  + +           +    N       +K
Sbjct: 117 EKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176

Query: 133 ELDSLR-DLEELDIGGNKI 150
           +   +     ++    N I
Sbjct: 177 KSSRITLKDTQIGQLSNNI 195

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 12/102 (11%), Positives = 39/102 (38%), Gaps = 12/102 (11%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSF--------NNSILSS 108
           +   + L  +++ +    + +       L  L  ++++N++ N          +   L+ 
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTF----LKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 109 LTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
                 ++ + + +N L+       L  ++ L  L+   N++
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 14/112 (12%), Positives = 35/112 (31%), Gaps = 22/112 (19%)

Query: 61  QQLESLDLTDNKIASCVENEGIE---------------RLSRLNNLKMLNLSGNSFNNSI 105
            +L    + ++   +    E  E               +   L +L  + +        +
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265

Query: 106 LSSLTHLSSLRSLNLFWNRLEGSIDVK-------ELDSLRDLEELDIGGNKI 150
            + L  L  ++ +N+  NR      +K       +      ++ + IG N +
Sbjct: 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 8e-07
 Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 5/95 (5%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEG-IERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 115
            T    L  +DL+ N  +           L         +  GN         +T   SL
Sbjct: 509 ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568

Query: 116 RSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
             L +  N +    +        ++  LDI  N  
Sbjct: 569 TQLQIGSNDIRKVNE----KITPNISVLDIKDNPN 599

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 13/100 (13%), Positives = 33/100 (33%), Gaps = 4/100 (4%)

Query: 69  TDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGS 128
            + ++       G+  L+    +  L+L G   +  +  ++  L+ L  L L  +  + +
Sbjct: 62  FNKELDMWGAQPGVS-LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 129 IDV---KELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKN 165
             +   K + +    E+         K  V         +
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 12/108 (11%), Positives = 32/108 (29%), Gaps = 25/108 (23%)

Query: 62  QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSF-------------------N 102
           +   +    N I   V       + RL  L+   +  + F                    
Sbjct: 184 KDTQIGQLSNNITF-VSKA----VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238

Query: 103 NSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            +      +L  L  + ++       +    L +L +++ +++  N+ 
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRG 285

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.4 bits (149), Expect = 1e-11
 Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 7/112 (6%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 120
            +L  LD   NK+        +E       L  L L  N               +  L  
Sbjct: 573 VKLGLLDCVHNKVRH------LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626

Query: 121 FWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNA-NLYKL 171
             N+L+   ++    S+  +  +D   NKI     +   +       N   +
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 8e-11
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 55  SLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 114
                  +++   +  N +     +  +    ++  L +L+   N      L +      
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASL---QKMVKLGLLDCVHNKV--RHLEAFGTNVK 596

Query: 115 LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L  L L +N++E  I          +E L    NK+
Sbjct: 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL 631

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 61  QQLESLDLTDNKIASCVENEGIER-LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
             + S+D + NKI S   N        +  N   + LS N             S + ++ 
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 120 LFWNRLE------GSIDVKELDSLRDLEELDIGGNKI 150
           L  N +                +   L  +D+  NK+
Sbjct: 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 8e-10
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 13/103 (12%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFN---------NSILS 107
           ++  + L  ++L +    + + +     L  L  L+ LN++ N              +  
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDF----LYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 108 SLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
                  ++   + +N LE       L  +  L  LD   NK+
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV 585

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 1e-09
 Identities = 16/125 (12%), Positives = 40/125 (32%), Gaps = 9/125 (7%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGN---SFNNSILSS 108
           +         Q+E L  + NK+         + +     +  ++ S N   S   +I  S
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY---VMGSVDFSYNKIGSEGRNISCS 666

Query: 109 LT--HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNA 166
           +      +  ++ L +N ++     +   +   +  + +  N +     +          
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPT-ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 167 NLYKL 171
           N Y L
Sbjct: 726 NTYLL 730

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 11/101 (10%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSF-------NNSILSSLTHL 112
                ++ L+ N+I            +  + +  + LS N               +  + 
Sbjct: 672 GINASTVTLSYNEIQKFPTEL----FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
             L +++L +N+L    D     +L  L  +D+  N    F
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF 768

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 4e-09
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNN-----SILSSLTH 111
           +     L ++DL  NK+ S  ++     L     L  +++S N F++        S L  
Sbjct: 724 YKNTYLLTTIDLRFNKLTSLSDDFRATTLP---YLSNMDVSYNCFSSFPTQPLNSSQLKA 780

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
                  +   NR+        + +   L +L IG N I K 
Sbjct: 781 FGIRHQRDAEGNRILRQWP-TGITTCPSLIQLQIGSNDIRKV 821

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 5e-09
 Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 23/117 (19%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIER---------------LSRLNNLKMLNLSGNSF 101
                +L+ +   ++           E                 S L +L  + L     
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 102 NNSILSSLTHLSSLRSLNLFWNRLEGSIDV--------KELDSLRDLEELDIGGNKI 150
              +   L  L  L+SLN+  NR   +  +         + D+   ++   +G N +
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 9e-08
 Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 9/97 (9%)

Query: 57  FTPFQQLESLDLTDNKIAS---CVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 113
            T    L ++D++ N  +S      N    +L         +  GN       + +T   
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLN--SSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806

Query: 114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           SL  L +  N +   +D K    L     LDI  N  
Sbjct: 807 SLIQLQIGSNDIR-KVDEKLTPQLY---ILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 8e-07
 Identities = 18/179 (10%), Positives = 40/179 (22%), Gaps = 35/179 (19%)

Query: 19  TDCCQWERVECS--NTMSRVIALDLSDTYGGEYWYLNASL---FTPFQQLESLDLTDNKI 73
            +   W        +   RV  L L+             +        +L+ L    +  
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFG------AKGRVPDAIGQLTELKVLSFGTHSE 359

Query: 74  ASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV-- 131
                  G E L+   + +  +     +    L     L+    L    NR      +  
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419

Query: 132 ----------------------KELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANL 168
                                 K +  L  L+ +    +      ++    +   +   
Sbjct: 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 12/98 (12%), Positives = 34/98 (34%), Gaps = 2/98 (2%)

Query: 46  GGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSI 105
            G+ W   +          + +  + ++    +  G++ L     +  L+L+G      +
Sbjct: 282 DGKNWRYYSGTINNTIHSLNWN-FNKELDMWGDQPGVD-LDNNGRVTGLSLAGFGAKGRV 339

Query: 106 LSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEEL 143
             ++  L+ L+ L+   +    S  +   + L      
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFN-NSILSSLT 110
                    Q+L   DL  + I    E + I++ SR++ LK   +   +     I  ++ 
Sbjct: 387 YKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRIS-LKDTQIGNLTNRITFISKAIQ 445

Query: 111 HLSSLRSLNLFWNRLEGSIDV------------------KELDSLRDLEELDIGGNKI 150
            L+ L+ +    +                              +L+DL ++++     
Sbjct: 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 12/95 (12%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS-SLRSL 118
            +  + L L+ N I        I  LS + NL++L+L  N      + +L  ++ +L  L
Sbjct: 47  LKACKHLALSTNNIEK------ISSLSGMENLRILSLGRNLI--KKIENLDAVADTLEEL 98

Query: 119 NLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
            + +N++     +  ++ L +L  L +  NKI  +
Sbjct: 99  WISYNQIA---SLSGIEKLVNLRVLYMSNNKITNW 130

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 16/99 (16%)

Query: 56  LFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNN-SILSSLTHLSS 114
           L      LE L ++ N+IAS      +  + +L NL++L +S N   N   +  L  L  
Sbjct: 88  LDAVADTLEELWISYNQIAS------LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 115 LRSLNLFWNRLEGSIDVKE---------LDSLRDLEELD 144
           L  L L  N L                 +  L +L++LD
Sbjct: 142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 9/95 (9%)

Query: 80  EGIERLSRLNNLKMLNLS----GNSFNN--SILSSLTHLSSLRSLNLFWNRLEGSIDVKE 133
           + I       ++                   + ++L+ L + + L L  N +E    +  
Sbjct: 9   DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE---KISS 65

Query: 134 LDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANL 168
           L  + +L  L +G N I K        +T++   +
Sbjct: 66  LSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
            T   Q+ +L      I S      I+ +  LNNL  +N S N   +  ++ L +L+ L 
Sbjct: 42  QTDLDQVTTLQADRLGIKS------IDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLV 93

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            + +  N++    D+  L +L +L  L +  N+I
Sbjct: 94  DILMNNNQIA---DITPLANLTNLTGLTLFNNQI 124

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 11/91 (12%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
              L  ++ ++N++        I  L  L  L  + ++ N   +  ++ L +L++L  L 
Sbjct: 67  LNNLTQINFSNNQL------TDITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLT 118

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           LF N++    D+  L +L +L  L++  N I
Sbjct: 119 LFNNQIT---DIDPLKNLTNLNRLELSSNTI 146

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 11/109 (10%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
            +  + L  L L  N I        I  +S L  L+ L    N  ++  +SSL +L+++ 
Sbjct: 305 ISNLKNLTYLTLYFNNI------SDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNIN 356

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKN 165
            L+   N++    D+  L +L  + +L +         V+     +I N
Sbjct: 357 WLSAGHNQIS---DLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.8 bits (143), Expect = 7e-11
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
            +   +L  L L  N+I        I  L+ L  L  L L+ N   +  +S +++L +L 
Sbjct: 261 LSGLTKLTELKLGANQI------SNISPLAGLTALTNLELNENQLED--ISPISNLKNLT 312

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            L L++N +    D+  + SL  L+ L    NK+
Sbjct: 313 YLTLYFNNIS---DISPVSSLTKLQRLFFYNNKV 343

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
                 LESL  T+N+I        I  L  L NL  L+L+GN   +  + +L  L++L 
Sbjct: 195 LAKLTNLESLIATNNQI------SDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLT 246

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
            L+L  N++    ++  L  L  L EL +G N+I   
Sbjct: 247 DLDLANNQIS---NLAPLSGLTKLTELKLGANQISNI 280

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 6e-10
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 11/94 (11%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
              L+ L L  N++      + I  L+ L NL  L+L+ N  +N  L+ L+ L+ L  L 
Sbjct: 220 LTNLDELSLNGNQL------KDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELK 271

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           L  N++    ++  L  L  L  L++  N+++  
Sbjct: 272 LGANQIS---NISPLAGLTALTNLELNENQLEDI 302

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.1 bits (136), Expect = 6e-10
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 11/95 (11%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
                +L  + + +N+I        I  L+ L NL  L L  N   +  +  L +L++L 
Sbjct: 86  LKNLTKLVDILMNNNQI------ADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLN 137

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKID 151
            L L  N +    D+  L  L  L++L  G    D
Sbjct: 138 RLELSSNTIS---DISALSGLTSLQQLSFGNQVTD 169

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 12/94 (12%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
                 L  L+L+ N I        I  LS L +L+ L+        + L  L +L++L 
Sbjct: 130 LKNLTNLNRLELSSNTI------SDISALSGLTSLQQLSFGNQV---TDLKPLANLTTLE 180

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            L++  N++    D+  L  L +LE L    N+I
Sbjct: 181 RLDISSNKVS---DISVLAKLTNLESLIATNNQI 211

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 11/91 (12%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
             +     L    +            + L+ +  L        +  +  + +L++L  +N
Sbjct: 23  LAEKMKTVLGKTNV------TDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
              N+L    D+  L +L  L ++ +  N+I
Sbjct: 75  FSNNQLT---DITPLKNLTKLVDILMNNNQI 102

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 11/86 (12%)

Query: 65  SLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNR 124
           +    D  I        I   + L       L   +  +    S T L  + +L      
Sbjct: 6   ATITQDTPINQ------IFTDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLG 57

Query: 125 LEGSIDVKELDSLRDLEELDIGGNKI 150
           ++    +  ++ L +L +++   N++
Sbjct: 58  IK---SIDGVEYLNNLTQINFSNNQL 80

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 9/95 (9%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
                 +  L    N+I        +  L+ L  +  L L+  ++ N+ ++   ++S   
Sbjct: 349 LANLTNINWLSAGHNQI------SDLTPLANLTRITQLGLNDQAWTNAPVNYKANVS--- 399

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKID 151
             N   N     I    +       E DI  N   
Sbjct: 400 IPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS 434

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 32/97 (32%), Positives = 42/97 (43%), Gaps = 11/97 (11%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
                 +  L L  NK+        I+ L+ L NL  L L  N   +  LSSL  L  L+
Sbjct: 64  IQYLPNVTKLFLNGNKLTD------IKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLK 115

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           SL+L  N +    D+  L  L  LE L +G NKI   
Sbjct: 116 SLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDI 149

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 11/92 (11%)

Query: 62  QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLF 121
           +L+SL L  N I+       I  L  L  L+ L L  N   +  ++ L+ L+ L +L+L 
Sbjct: 113 KLKSLSLEHNGISD------INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLE 164

Query: 122 WNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
            N++    D+  L  L  L+ L +  N I   
Sbjct: 165 DNQIS---DIVPLAGLTKLQNLYLSKNHISDL 193

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 11/94 (11%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
                QLESL L +NKI        I  LSRL  L  L+L  N  ++  +  L  L+ L+
Sbjct: 130 LVHLPQLESLYLGNNKITD------ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQ 181

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           +L L  N +    D++ L  L++L+ L++   + 
Sbjct: 182 NLYLSKNHIS---DLRALAGLKNLDVLELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
              ++ +   ++ I S      ++ +  L N+  L L+GN    + +  L +L +L  L 
Sbjct: 45  LNSIDQIIANNSDIKS------VQGIQYLPNVTKLFLNGN--KLTDIKPLANLKNLGWLF 96

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L  N+++   D+  L  L+ L+ L +  N I
Sbjct: 97  LDENKVK---DLSSLKDLKKLKSLSLEHNGI 124

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 11/94 (11%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
           F +    +L    +            + LN++  +  + +   +  +  + +L ++  L 
Sbjct: 23  FAETIKDNLKKKSVTD------AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           L  N+L    D+K L +L++L  L +  NK+   
Sbjct: 75  LNGNKLT---DIKPLANLKNLGWLFLDENKVKDL 105

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 82  IERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLE 141
           I            NL   S  +    +   L+S+  +    + ++    V+ +  L ++ 
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVT 71

Query: 142 ELDIGGNKI 150
           +L + GNK+
Sbjct: 72  KLFLNGNKL 80

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
             +L++L L+ N I+       +  L+ L NL +L L      N  ++  ++L    ++ 
Sbjct: 177 LTKLQNLYLSKNHISD------LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDI 145
                L   +  + +    D E+ ++
Sbjct: 231 NTDGSL---VTPEIISDDGDYEKPNV 253

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 4/99 (4%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           ++A+ FT    LE LDL+DN     V+         L  L  L+L               
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPAT---FHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L++L+ L L  N L+ ++       L +L  L + GN+I
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRI 165

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.1 bits (141), Expect = 9e-11
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 18/106 (16%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL 109
           + A+ F   + L  L L  N +A       I+    + L  L+ L+LS    +N+ L S+
Sbjct: 47  VPAASFRACRNLTILWLHSNVLAR------IDAAAFTGLALLEQLDLS----DNAQLRSV 96

Query: 110 -----THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
                  L  L +L+L    L+  +       L  L+ L +  N +
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSS 108
            ++ + F    +L +L L    +        +       L  L+ L L  N+       +
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQE------LGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 109 LTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
              L +L  L L  NR+  S+  +    L  L+ L +  N++
Sbjct: 149 FRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRV 189

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 9/101 (8%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL 109
           L   LF     L+ L L DN + +      +       L NL  L L GN  ++    + 
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQA------LPDDTFRDLGNLTHLFLHGNRISSVPERAF 173

Query: 110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
             L SL  L L  NR+   +       L  L  L +  N +
Sbjct: 174 RGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 9/100 (9%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSS 108
            L    F     L  L L  N+I+S      +       L++L  L L  N   +    +
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISS------VPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 109 LTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGN 148
              L  L +L LF N L  ++  + L  LR L+ L +  N
Sbjct: 197 FRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 63  LESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFW 122
            + + L  N+I+               NL +L L  N       ++ T L+ L  L+L  
Sbjct: 34  SQRIFLHGNRISHVPAAS----FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 123 NRLEGSIDVKELDSLRDLEELDIGGNKI 150
           N    S+D      L  L  L +    +
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGL 117

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 90  NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGN 148
             + + L GN  ++   +S     +L  L L  N L   ID      L  LE+LD+  N
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.5 bits (144), Expect = 5e-11
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 12/99 (12%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
             ASL      ++ LDL+ N ++     +    L+    L++LNLS N         L  
Sbjct: 25  ALASLRQSAWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYE--TLDLES 78

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           LS+LR+L+L  N +      +EL     +E L    N I
Sbjct: 79  LSTLRTLDLNNNYV------QELLVGPSIETLHAANNNI 111

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.8 bits (137), Expect = 4e-10
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 15/99 (15%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           ++A+   PF +LE L+L+ N +           L  L+ L+ L+L+ N      +  L  
Sbjct: 49  ISAADLAPFTKLELLNLSSNVLYE------TLDLESLSTLRTLDLNNNY-----VQELLV 97

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
             S+ +L+   N +   +        +  + + +  NKI
Sbjct: 98  GPSIETLHAANNNIS-RVS---CSRGQGKKNIYLANNKI 132

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.8 bits (137), Expect = 5e-10
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 7/90 (7%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 120
            + +   +TD+ +   + +          N+K L+LSGN  +    + L   + L  LNL
Sbjct: 10  NRYKIEKVTDSSLKQALASL----RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 121 FWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
             N L    +  +L+SL  L  LD+  N +
Sbjct: 66  SSNVLY---ETLDLESLSTLRTLDLNNNYV 92

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 9/98 (9%)

Query: 54  ASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 113
           A L      LE L+L  N I        ++       LK L+LS N     +       +
Sbjct: 162 AELAASSDTLEHLNLQYNFIYD------VKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAA 214

Query: 114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKID 151
            +  ++L  N+L   I+ K L   ++LE  D+ GN   
Sbjct: 215 GVTWISLRNNKLV-LIE-KALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 88  LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGG 147
            N  K+  ++ +S   ++ S      +++ L+L  N L   I   +L     LE L++  
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 148 NKI 150
           N +
Sbjct: 68  NVL 70

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 3e-08
 Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 12/106 (11%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERL------------SRLNNLKMLNLSGNSFNNS 104
                 L +LDL +N +   +    IE L            SR    K + L+ N     
Sbjct: 76  LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135

Query: 105 ILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
                   S ++ L+L  N ++     +   S   LE L++  N I
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 6/92 (6%)

Query: 58  TPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRS 117
             F +L++LDL+ NK+A  +  E          +  ++L  N     I  +L    +L  
Sbjct: 188 VVFAKLKTLDLSSNKLAF-MGPE----FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241

Query: 118 LNLFWNRLEGSIDVKELDSLRDLEELDIGGNK 149
            +L  N              + ++ +     K
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 20/94 (21%), Positives = 46/94 (48%), Gaps = 11/94 (11%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
                ++  L+L+ N + +      +  ++ L ++K L+L+     +  ++ L  LS+L+
Sbjct: 81  LKNLTKITELELSGNPLKN------VSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQ 132

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            L L  N++    ++  L  L +L+ L IG  ++
Sbjct: 133 VLYLDLNQIT---NISPLAGLTNLQYLSIGNAQV 163

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 11/94 (11%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
                 + +L      + +      IE +  LNNL  L L  N   +  L+ L +L+ + 
Sbjct: 37  QADLDGITTLSAFGTGVTT------IEGVQYLNNLIGLELKDNQITD--LAPLKNLTKIT 88

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            L L  N L+   +V  +  L+ ++ LD+   +I
Sbjct: 89  ELELSGNPLK---NVSAIAGLQSIKTLDLTSTQI 119

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 11/91 (12%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
              L  L+L DN+I        +  L  L  +  L LSGN   N  +S++  L S+++L+
Sbjct: 62  LNNLIGLELKDNQITD------LAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLD 113

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L   ++    DV  L  L +L+ L +  N+I
Sbjct: 114 LTSTQI---TDVTPLAGLSNLQVLYLDLNQI 141

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 11/94 (11%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
               Q +++LDLT  +I        +  L+ L+NL++L L  N   N  +S L  L++L+
Sbjct: 103 IAGLQSIKTLDLTSTQITD------VTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQ 154

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            L++   ++    D+  L +L  L  L    NKI
Sbjct: 155 YLSIGNAQVS---DLTPLANLSKLTTLKADDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 11/109 (10%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
                 L+ L + + +++       +  L+ L+ L  L    N  ++  +S L  L +L 
Sbjct: 147 LAGLTNLQYLSIGNAQVSD------LTPLANLSKLTTLKADDNKISD--ISPLASLPNLI 198

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKN 165
            ++L  N++    DV  L +  +L  + +    I    V       + N
Sbjct: 199 EVHLKNNQIS---DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPN 244

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 11/94 (11%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
              L+ L L  N+I +      I  L+ L NL+ L++     ++  L+ L +LS L +L 
Sbjct: 128 LSNLQVLYLDLNQITN------ISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLK 179

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
              N++    D+  L SL +L E+ +  N+I   
Sbjct: 180 ADDNKIS---DISPLASLPNLIEVHLKNNQISDV 210

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 11/94 (11%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
                 +    + +            + L+ +  L+  G       +  + +L++L  L 
Sbjct: 18  LANAIKIAAGKSNV------TDTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           L  N++    D+  L +L  + EL++ GN +   
Sbjct: 70  LKDNQIT---DLAPLKNLTKITELELSGNPLKNV 100

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 82  IERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLE 141
           I     L N   +    ++  +    +   L  + +L+ F   +     ++ +  L +L 
Sbjct: 12  IFPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLI 66

Query: 142 ELDIGGNKI 150
            L++  N+I
Sbjct: 67  GLELKDNQI 75

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.5 bits (142), Expect = 9e-11
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           L A+L   F+Q+E L+L D +I            +  + ++ L +  N+          +
Sbjct: 60  LPAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQN 115

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           +  L  L L  N L  S+      +   L  L +  N +
Sbjct: 116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL 153

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           ++   F     ++ L +  N I     +        +  L +L L  N  ++       +
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHN 139

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
              L +L++  N LE  I+     +   L+ L +  N++   
Sbjct: 140 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV 180

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 8/94 (8%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
             +L  L L  N +           L     L  ++LS N     +      +  L  L 
Sbjct: 225 NVELTILKLQHNNLTD------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           +  NRL  +++      +  L+ LD+  N +   
Sbjct: 279 ISNNRLV-ALN-LYGQPIPTLKVLDLSHNHLLHV 310

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 55  SLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 114
           +    +  L  +DL+ N++   +         ++  L+ L +S N    ++      + +
Sbjct: 242 AWLLNYPGLVEVDLSYNELEK-IMY---HPFVKMQRLERLYISNNRL-VALNLYGQPIPT 296

Query: 115 LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L+ L+L  N L   ++ +       LE L +  N I
Sbjct: 297 LKVLDLSHNHLL-HVE-RNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 12/105 (11%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSS 108
           YL   +F     L  L L  N ++S      + R        L  L++S N+       +
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSS------LPRGIFHNTPKLTTLSMSNNNLERIEDDT 160

Query: 109 LTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
               +SL++L L  NRL   +D   L  +  L   ++  N +   
Sbjct: 161 FQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSYNLLSTL 201

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 9/94 (9%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
                  + +   ++ +           L     +++LNL+          +  +  +++
Sbjct: 41  DITLNNQKIVTFKNSTMRKLPAAL----LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            L + +N +   +      ++  L  L +  N +
Sbjct: 97  KLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL 129

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 32/130 (24%)

Query: 52  LNASLFTPFQQLESLDLTDNKIAS------------CVENEGIERLSRLNNLKMLNLSGN 99
           +    F     L++L L+ N++               V    +  L+    ++ L+ S N
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN 215

Query: 100 SF-----------------NNSI--LSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDL 140
           S                  +N++   + L +   L  ++L +N LE  I       ++ L
Sbjct: 216 SINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRL 274

Query: 141 EELDIGGNKI 150
           E L I  N++
Sbjct: 275 ERLYISNNRL 284

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIER-LSRLNNLKMLNLSGNSFNNSILSSL 109
            +    F   Q+LE L +++N++ +      +      +  LK+L+LS N     +  + 
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRLVA------LNLYGQPIPTLKVLDLSHNHL-LHVERNQ 314

Query: 110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKID 151
                L +L L  N +  ++    L +   L+ L +  N  D
Sbjct: 315 PQFDRLENLYLDHNSIV-TLK---LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 17/104 (16%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL 109
           L   +F    +L +L +++N +        IE        +L+ L LS N   +     L
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLER------IEDDTFQATTSLQNLQLSSNRLTH---VDL 182

Query: 110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           + + SL   N+ +N L        L     +EELD   N I+  
Sbjct: 183 SLIPSLFHANVSYNLLS------TLAIPIAVEELDASHNSINVV 220

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 13/95 (13%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIER-LSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 115
             P   L+ LDL+ N +        +ER   + + L+ L L  NS   ++   L+   +L
Sbjct: 291 GQPIPTLKVLDLSHNHLLH------VERNQPQFDRLENLYLDHNSI-VTL--KLSTHHTL 341

Query: 116 RSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           ++L L  N  + +         R++    +     
Sbjct: 342 KNLTLSHNDWDCN---SLRALFRNVARPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 9/66 (13%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 85  LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELD 144
           L        +++   + +         L++ + +    + +   +    LDS R +E L+
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 145 IGGNKI 150
           +   +I
Sbjct: 76  LNDLQI 81

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 11/119 (9%)

Query: 39  LDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSG 98
           L +   Y    +Y  +++++  ++++ + + ++K+   V          L +L+ L+LS 
Sbjct: 291 LHIPQFY---LFYDLSTVYSLLEKVKRITVENSKV-FLVPCSF---SQHLKSLEFLDLSE 343

Query: 99  NSFNNSIL---SSLTHLSSLRSLNLFWNRLEG-SIDVKELDSLRDLEELDIGGNKIDKF 153
           N      L   +      SL++L L  N L       + L +L++L  LDI  N     
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM 402

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
            Q LE LD+++N + S            L  L+ L +S N      L   +    L  + 
Sbjct: 430 PQTLEVLDVSNNNLDSFSLF--------LPRLQELYISRNKL--KTLPDASLFPVLLVMK 479

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKID 151
           +  N+L+ S+     D L  L+++ +  N  D
Sbjct: 480 ISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 6e-10
 Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 8/117 (6%)

Query: 39  LDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSG 98
           + + ++     + +  S     + LE LDL++N +                +L+ L LS 
Sbjct: 315 ITVENSK---VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC-KGAWPSLQTLVLSQ 370

Query: 99  NSFNN--SILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           N   +       L  L +L SL++  N      D         +  L++    I   
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD--SCQWPEKMRFLNLSSTGIRVV 425

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL 109
           +          L+ L L  ++I +      IE      L +L+ L+LS N  ++   S  
Sbjct: 41  IGHGDLRACANLQVLILKSSRINT------IEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94

Query: 110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGN 148
             LSSL+ LNL  N  +         +L +L+ L IG  
Sbjct: 95  GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.6 bits (129), Expect = 5e-09
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 7/121 (5%)

Query: 33  MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLK 92
           +  +  LDLS+    E +  N++    +  L++L L+ N + S  +   I  L  L NL 
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI--LLTLKNLT 390

Query: 93  MLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK 152
            L++S N+F+  +  S      +R LNL    +   +        + LE LD+  N +D 
Sbjct: 391 SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVK---TCIPQTLEVLDVSNNNLDS 445

Query: 153 F 153
           F
Sbjct: 446 F 446

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
              ++SLDL+ NKI      +    L    NL++L L  +  N     +   L SL  L+
Sbjct: 25  TAAMKSLDLSFNKITYIGHGD----LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           L  N L  S+       L  L+ L++ GN     
Sbjct: 81  LSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTL 113

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 4/101 (3%)

Query: 53  NASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112
             SLF     L++L + + +  S +        + L +L  L +   S  N    SL  +
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRID---FAGLTSLNELEIKALSLRNYQSQSLKSI 171

Query: 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
             +  L L  +     +     D L  +  L++    + +F
Sbjct: 172 RDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARF 211

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 9e-07
 Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 3/130 (2%)

Query: 39  LDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIER-LSRLNNLKMLNLS 97
            D +    G++    + + +   ++E++ +    I        +    S L  +K + + 
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 98  GNSFNNSILSSLTHLSSLRSLNLFWNRL--EGSIDVKELDSLRDLEELDIGGNKIDKFVV 155
            +       S   HL SL  L+L  N +  E   +     +   L+ L +  N +     
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 156 SKGTTNTIKN 165
           +     T+KN
Sbjct: 379 TGEILLTLKN 388

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 55  SLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 114
           S      +L+ L ++ NK+ +      +   S    L ++ +S N   +        L+S
Sbjct: 445 SFSLFLPRLQELYISRNKLKT------LPDASLFPVLLVMKISRNQLKSVPDGIFDRLTS 498

Query: 115 LRSLNLFWNRL 125
           L+ + L  N  
Sbjct: 499 LQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 15/121 (12%), Positives = 34/121 (28%), Gaps = 7/121 (5%)

Query: 33  MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLK 92
           ++ +  L + +     +  +    F     L  L++    + +         L  + ++ 
Sbjct: 122 LTNLQTLRIGNVE--TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS----LKSIRDIH 175

Query: 93  MLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK 152
            L L  +     +      LSS+R L L    L        L        +     +   
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 153 F 153
            
Sbjct: 235 L 235

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 13/101 (12%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLN--NLKMLNLSGNSFNNSILSSL 109
           L   L     + +   L      +  E++ +  L ++    ++ L++        + +  
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306

Query: 110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           + L  ++ + +  +++   +       L+ LE LD+  N +
Sbjct: 307 SLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM 346

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           L A+L   F+Q+E L+L D +I            +  + ++ L +  N+          +
Sbjct: 66  LPAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQN 121

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           +  L  L L  N L  S+      +   L  L +  N +
Sbjct: 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL 159

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 6e-09
 Identities = 9/94 (9%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
                  + +   ++ +           L     +++LNL+          +  +  +++
Sbjct: 47  DITLNNQKIVTFKNSTMRKLPAAL----LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 102

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            L + +N +   +      ++  L  L +  N +
Sbjct: 103 KLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL 135

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.0 bits (127), Expect = 8e-09
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 12/105 (11%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSS 108
           YL   +F     L  L L  N ++S      + R        L  L++S N+       +
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSS------LPRGIFHNTPKLTTLSMSNNNLERIEDDT 166

Query: 109 LTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
               +SL++L L  NRL   +D   L  +  L   ++  N +   
Sbjct: 167 FQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSYNLLSTL 207

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.0 bits (127), Expect = 9e-09
 Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 53  NASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112
           + +    +  L  +DL+ N++   +         ++  L+ L +S N    ++      +
Sbjct: 246 DTAWLLNYPGLVEVDLSYNELEK-IMY---HPFVKMQRLERLYISNNRL-VALNLYGQPI 300

Query: 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            +L+ L+L  N L   ++ +       LE L +  N I
Sbjct: 301 PTLKVLDLSHNHLL-HVE-RNQPQFDRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 32/130 (24%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASC------------VENEGIERLSRLNNLKMLNLSGN 99
           +    F     L++L L+ N++               V    +  L+    ++ L+ S N
Sbjct: 162 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN 221

Query: 100 SF-----------------NNSI--LSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDL 140
           S                  +N++   + L +   L  ++L +N LE  I       ++ L
Sbjct: 222 SINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRL 280

Query: 141 EELDIGGNKI 150
           E L I  N++
Sbjct: 281 ERLYISNNRL 290

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.3 bits (120), Expect = 6e-08
 Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIER-LSRLNNLKMLNLSGNSFNNSILSSL 109
            +    F   Q+LE L +++N++ +      +      +  LK+L+LS N     +  + 
Sbjct: 268 KIMYHPFVKMQRLERLYISNNRLVA------LNLYGQPIPTLKVLDLSHNHL-LHVERNQ 320

Query: 110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKID 151
                L +L L  N +  ++    L +   L+ L +  N  D
Sbjct: 321 PQFDRLENLYLDHNSIV-TLK---LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.6 bits (113), Expect = 6e-07
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 17/101 (16%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL 109
           L   +F    +L +L +++N +        IE        +L+ L LS N   +     L
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLER------IEDDTFQATTSLQNLQLSSNRLTH---VDL 188

Query: 110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           + + SL   N+ +N L        L     +EELD   N I
Sbjct: 189 SLIPSLFHANVSYNLL------STLAIPIAVEELDASHNSI 223

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 9/66 (13%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 85  LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELD 144
           L        +++   + +         L++ + +    + +   +    LDS R +E L+
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 81

Query: 145 IGGNKI 150
           +   +I
Sbjct: 82  LNDLQI 87

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.2 bits (138), Expect = 2e-10
 Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 3/105 (2%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFN---NSILSS 108
            +      F  L +LDL+DN               +   L++L L             + 
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 109 LTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
                 L+ L+L  N L  +      D    L  L++    + + 
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 9/122 (7%)

Query: 29  CSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL 88
           C      +  L L +        + ++L     QL+ LDL+ N +               
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS---CDWP 252

Query: 89  NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGN 148
           + L  LNLS       +   L   + L  L+L +NRL+        D L  +  L + GN
Sbjct: 253 SQLNSLNLSFTGL-KQVPKGL--PAKLSVLDLSYNRLDR---NPSPDELPQVGNLSLKGN 306

Query: 149 KI 150
             
Sbjct: 307 PF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.9 bits (119), Expect = 8e-08
 Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)

Query: 39  LDLSD-TYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLS 97
           LDLSD    GE   ++A     F  L+ L L +  + +          +    L+ L+LS
Sbjct: 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET-PSGVCSALAAARVQLQGLDLS 236

Query: 98  GNSFNNSI-LSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
            NS  ++    S    S L SLNL +  L+  +          L  LD+  N++D+ 
Sbjct: 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK---GLPAKLSVLDLSYNRLDRN 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 3/98 (3%)

Query: 56  LFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 115
           L      L  L+L +   A+        +      LK+L+++     N     +    +L
Sbjct: 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175

Query: 116 RSLNLFWNRLEGSIDVKE---LDSLRDLEELDIGGNKI 150
            +L+L  N   G   +           L+ L +    +
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 62  QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLF 121
            L  L L +N++         + L  L NL++L++  N   +  +  L  LS L  L+L 
Sbjct: 107 CLSRLFLDNNELRD------TDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLH 158

Query: 122 WNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAG 173
            N +    +   L  L+ +  +D+ G K     V       I N  +    G
Sbjct: 159 GNEIT---NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITN-TVKDPDG 206

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
                  +L    +        +     L+ ++  N   ++  +  L+ +   ++L+ L+
Sbjct: 18  LANAVKQNLGKQSVTD------LVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L  N++    D+  L  L  LEEL +  N++
Sbjct: 70  LSHNQIS---DLSPLKDLTKLEELSVNRNRL 97

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 28/110 (25%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNS-----------------FN 102
           F  L+ L L+ N+I+       +  L  L  L+ L+++ N                   N
Sbjct: 62  FTNLKELHLSHNQISD------LSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDN 115

Query: 103 NSI--LSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           N +    SL HL +L  L++  N+L+    +  L  L  LE LD+ GN+I
Sbjct: 116 NELRDTDSLIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEI 162

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 82  IERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLE 141
           +     L N    NL   S  +  L S   LS +++ N   + ++    +  +    +L+
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLK 66

Query: 142 ELDIGGNKIDK 152
           EL +  N+I  
Sbjct: 67  ELHLSHNQISD 77

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 4e-10
 Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 8/99 (8%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
            + +   P+ +L  L+L   ++        ++    L  L  L+LS N    S+      
Sbjct: 46  FSLATLMPYTRLTQLNLDRAELTK------LQVDGTLPVLGTLDLSHNQL-QSLPLLGQT 98

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L +L  L++ +NRL  S+ +  L  L +L+EL + GN++
Sbjct: 99  LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 18/100 (18%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERL-SRLNNLKMLNLSGNSFNNSILSSL-----T 110
                 L +LDL+ N++ S      +  L   L  L +L++S N      L+SL      
Sbjct: 73  DGTLPVLGTLDLSHNQLQS------LPLLGQTLPALTVLDVSFNR-----LTSLPLGALR 121

Query: 111 HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            L  L+ L L  N L+ ++    L     LE+L +  N +
Sbjct: 122 GLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL 160

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.8 bits (135), Expect = 7e-10
 Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 28/151 (18%)

Query: 22  CQWERVECS---------NTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNK 72
           C    V+CS         +       LDL +    E   +    F   + L +L L +NK
Sbjct: 31  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE---IKDGDFKNLKNLHTLILINNK 87

Query: 73  IASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSLTH--LSSLRSLNLFWNRLEGS 128
           I+       I     + L  L+ L LS N      L  L      +L+ L +  N +   
Sbjct: 88  ISK------ISPGAFAPLVKLERLYLSKNQ-----LKELPEKMPKTLQELRVHENEIT-K 135

Query: 129 IDVKELDSLRDLEELDIGGNKIDKFVVSKGT 159
           +     + L  +  +++G N +    +  G 
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.8 bits (135), Expect = 8e-10
 Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 12/114 (10%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           ++A+       L  L L+ N I S V+N  +       +L+ L+L+ N     +   L  
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSI-SAVDNGSLANTP---HLRELHLNNNKLV-KVPGGLAD 261

Query: 112 LSSLRSLNLFWNRLEGSIDVK------ELDSLRDLEELDIGGNKIDKFVVSKGT 159
              ++ + L  N +  +I                   + +  N +  + +   T
Sbjct: 262 HKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 24/120 (20%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSF---------- 101
           +  S+F    Q+  ++L  N + S     G      +  L  + ++  +           
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGA--FQGMKKLSYIRIADTNITTIPQGLPPS 193

Query: 102 -------NNSI----LSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
                   N I     +SL  L++L  L L +N +  ++D   L +   L EL +  NK+
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKL 252

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 60  FQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRS 117
              L  L L  NKI        ++   L  LNNL  L LS NS +     SL +   LR 
Sbjct: 191 PPSLTELHLDGNKITK------VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244

Query: 118 LNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           L+L  N+L   +    L   + ++ + +  N I   
Sbjct: 245 LHLNNNKLV-KVP-GGLADHKYIQVVYLHNNNISAI 278

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 12/105 (11%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNN------SI 105
           ++         L  L L +NK+   V       L+    ++++ L  N+ +         
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLVK-VPGG----LADHKYIQVVYLHNNNISAIGSNDFCP 285

Query: 106 LSSLTHLSSLRSLNLFWNRLE-GSIDVKELDSLRDLEELDIGGNK 149
               T  +S   ++LF N ++   I       +     + +G  K
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 4/100 (4%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           LN + F+  Q L+ L +        + N     LS   +L +L L  N F      +   
Sbjct: 45  LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS---SLIILKLDYNQFLQLETGAFNG 101

Query: 112 LSSLRSLNLFWNRLEGS-IDVKELDSLRDLEELDIGGNKI 150
           L++L  L L    L+G+ +       L  LE L +  N I
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.8 bits (127), Expect = 8e-09
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 19/106 (17%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL 109
           L  S+F+ F  LE L L  N+I        I+      L +L  LNLS N      L S+
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEINK------IDDNAFWGLTHLLKLNLSQNF-----LGSI 338

Query: 110 -----THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
                 +L  L  L+L +N +  ++  +    L +L+EL +  N++
Sbjct: 339 DSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 6/98 (6%)

Query: 63  LESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSI-LSSLTHLSSLRSLNLF 121
           +  +DL+ N IA   E       SRL +L+ L +   +    I  ++   LSSL  L L 
Sbjct: 32  VNYVDLSLNSIAELNETS----FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 122 WNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGT 159
           +N+    ++    + L +LE L +    +D  V+S   
Sbjct: 88  YNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNF 124

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 59  PFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSL 118
               +++ DL+ +KI +    + +   S   +L+ L L+ N  N    ++   L+ L  L
Sbjct: 273 EASGVKTCDLSKSKIFAL--LKSV--FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328

Query: 119 NLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           NL  N L GSID +  ++L  LE LD+  N I
Sbjct: 329 NLSQNFL-GSIDSRMFENLDKLEVLDLSYNHI 359

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 14/111 (12%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGN---SFNNSILS 107
            L+ + F P   LE L L DN I   ++         +    +L+L+ N   S     L 
Sbjct: 119 VLSGNFFKPLTSLEMLVLRDNNIKK-IQPASF--FLNMRRFHVLDLTFNKVKSICEEDLL 175

Query: 108 SLTHLSSLRSLNLFWNRLE-------GSIDVKELDSLRDLEELDIGGNKID 151
           +         L L    L+       G            +  LD+ GN   
Sbjct: 176 NFQGK-HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 13/61 (21%), Positives = 23/61 (37%)

Query: 90  NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK 149
           ++  ++LS NS      +S + L  L+ L +        I       L  L  L +  N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 150 I 150
            
Sbjct: 91  F 91

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 19/124 (15%), Positives = 43/124 (34%), Gaps = 14/124 (11%)

Query: 39  LDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSG 98
           + L D       +           + +LDL+ N        +          ++ L LS 
Sbjct: 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF-KESMAKRFFDAIAGTKIQSLILSN 248

Query: 99  N-----SFNNSILSSLTHL-------SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIG 146
           +     SF ++      +        S +++ +L  +++  ++         DLE+L + 
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLA 307

Query: 147 GNKI 150
            N+I
Sbjct: 308 QNEI 311

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 8/108 (7%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           L    F   Q L +L L +NKI+  +  +     S L  L+ L +S N     I  +L  
Sbjct: 69  LRKDDFKGLQHLYALVLVNNKISK-IHEKA---FSPLRKLQKLYISKNHL-VEIPPNL-- 121

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGT 159
            SSL  L +  NR+   +       LR++  +++GGN ++      G 
Sbjct: 122 PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.7 bits (127), Expect = 7e-09
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 12/114 (10%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           +       + +L  L L  N+I   +EN     LS L  L+ L+L  N   + + + L  
Sbjct: 208 IELEDLLRYSKLYRLGLGHNQI-RMIENGS---LSFLPTLRELHLDNNKL-SRVPAGLPD 262

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRD------LEELDIGGNKIDKFVVSKGT 159
           L  L+ + L  N +   + V +   +           + +  N +  + V   T
Sbjct: 263 LKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.7 bits (127), Expect = 8e-09
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
            + L  L L  NKI + +E E    L R + L  L L  N        SL+ L +LR L+
Sbjct: 192 PETLNELHLDHNKIQA-IELE---DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L  N+L   +    L  L+ L+ + +  N I
Sbjct: 248 LDNNKLS-RVP-AGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 19/120 (15%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGI---ERLSRLN---------------NLKM 93
           +   +F+  + +  +++  N + +     G     +L+ L                 L  
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNE 197

Query: 94  LNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           L+L  N      L  L   S L  L L  N++   I+   L  L  L EL +  NK+ + 
Sbjct: 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSRV 256

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 13/96 (13%)

Query: 60  FQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSLT-HLSSLR 116
              L  L + DN+I        + +   S L N+  + + GN   NS           L 
Sbjct: 122 PSSLVELRIHDNRIRK------VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN 175

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK 152
            L +   +L   I     D    L EL +  NKI  
Sbjct: 176 YLRISEAKLT-GIPK---DLPETLNELHLDHNKIQA 207

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 90  NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK 149
           +  +L+L  N  +         L  L +L L  N++   I  K    LR L++L I  N 
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH 113

Query: 150 I 150
           +
Sbjct: 114 L 114

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 15/107 (14%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-- 109
           L +  F  F +L+ LDL+  +I +    +G      L++L  L L+GN      + SL  
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQT--IEDGA--YQSLSHLSTLILTGNP-----IQSLAL 93

Query: 110 ---THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
              + LSSL+ L      L  S++   +  L+ L+EL++  N I  F
Sbjct: 94  GAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSF 139

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.7 bits (122), Expect = 4e-08
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 14/104 (13%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-- 109
           +    +     L +L LT N I S     G    S L++L+ L     +     L+SL  
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSL--ALGA--FSGLSSLQKLVAVETN-----LASLEN 117

Query: 110 ---THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
               HL +L+ LN+  N ++     +   +L +LE LD+  NKI
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 19/95 (20%)

Query: 63  LESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL-----THLSSL 115
            ++LDL+ N +        +          L++L+LS        + ++       LS L
Sbjct: 30  TKNLDLSFNPLRH------LGSYSFFSFPELQVLDLSRCE-----IQTIEDGAYQSLSHL 78

Query: 116 RSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            +L L  N ++ S+ +     L  L++L      +
Sbjct: 79  STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL 112

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 4/96 (4%)

Query: 54  ASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKM-LNLSGNSFNNSILSSLTHL 112
              F+    LE LDL+ NKI S +    +  L ++  L + L+LS N   N I       
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKE 199

Query: 113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGN 148
             L+ L L  N+L+ S+     D L  L+++ +  N
Sbjct: 200 IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.5 bits (131), Expect = 3e-09
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 15/99 (15%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGN---SFNNSILSSLTH 111
            T    L SL L+ N +        I       + NL+ L+LS N   + +  + S L  
Sbjct: 60  PTRLTNLHSLLLSHNHLNF------ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ- 112

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
             +L  L L+ N +   +D    + +  L++L +  N+I
Sbjct: 113 --ALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQI 148

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 14/107 (13%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGN---SFNNSIL 106
           L+  LF+  Q LE L L +N I        ++R     +  L+ L LS N    F   ++
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVV------VDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 107 SSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDL--EELDIGGNKID 151
                L  L  L+L  N+L+  + + +L  L       L +  N ++
Sbjct: 157 KDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSS 108
           ++++  F P   L  LDL+ N + +      ++    S L  L++L L  N      +  
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLHT------LDEFLFSDLQALEVLLLYNNH-----IVV 126

Query: 109 L-----THLSSLRSLNLFWNRLEGSIDV---KELDSLRDLEELDIGGNKI 150
           +       ++ L+ L L  N++     V   K+ + L  L  LD+  NK+
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKL 175

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 50  WYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL 109
             ++ + F    QL+ L L+ N+I S    E I+  ++L  L +L+LS N      L+ L
Sbjct: 125 VVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183

Query: 110 THLSSLRSLNL 120
             L +     L
Sbjct: 184 QKLPAWVKNGL 194

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNN-SILSSLT 110
           +    F+    LE LDL+ N +++   +        L++L  LNL GN +      S  +
Sbjct: 91  IEEDSFSSLGSLEHLDLSYNYLSNL--SSSW--FKPLSSLTFLNLLGNPYKTLGETSLFS 146

Query: 111 HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           HL+ L+ L +        I  K+   L  LEEL+I  + +
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSI-LSSLT 110
           L++S F P   L  L+L  N     +    +   S L  L++L +        I      
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPY-KTLGETSL--FSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 111 HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            L+ L  L +  + L+ S + K L S++++  L +   + 
Sbjct: 172 GLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQH 210

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENE----GIERLSRLNNLKMLNLSGNSFNNSILS 107
           L          +E L+L D  + +   +E        L +    + + ++  S    ++ 
Sbjct: 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMK 271

Query: 108 SLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKID 151
            L  +S L  L    N+L+ S+     D L  L+++ +  N  D
Sbjct: 272 LLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 11/107 (10%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT 110
            +    F     LE L++  + + S  E +    L  + N+  L L        +   + 
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQS-YEPKS---LKSIQNVSHLILHMKQHILLLEIFVD 219

Query: 111 HLSSLRSLNLFWNRLEG-------SIDVKELDSLRDLEELDIGGNKI 150
             SS+  L L    L+        + +   L        + I    +
Sbjct: 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 14/107 (13%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-- 109
                    Q +  L L   +    +E      +   ++++ L L     +    S L  
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHILLLEI----FVDVTSSVECLELRDTDLDTFHFSELST 244

Query: 110 ------THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
                     + R++ +    L   + +  L+ +  L EL+   N++
Sbjct: 245 GETNSLIKKFTFRNVKITDESLFQVMKL--LNQISGLLELEFSRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 10/104 (9%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL-----NNLKMLNLSGNSFNNSIL 106
           + +          SL    N I           L+ +       +K L+LS N       
Sbjct: 14  IISLSKEESSNQASLSCDRNGICKGSSG----SLNSIPSGLTEAVKSLDLSNNRITYISN 69

Query: 107 SSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           S L    +L++L L  N +  +I+     SL  LE LD+  N +
Sbjct: 70  SDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL 112

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 6/112 (5%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNN--SILSSL 109
           ++    +       LD ++N +   V          L  L+ L L  N       I    
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFEN----CGHLTELETLILQMNQLKELSKIAEMT 370

Query: 110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTN 161
           T + SL+ L++  N +       +    + L  L++  N +   +       
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR 422

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.0 bits (122), Expect = 3e-08
 Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 15/112 (13%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL 109
           L  S      +L  L ++ N+I        ++         L+ L+LS N      L  +
Sbjct: 36  LWTSDILSLSKLRILIISHNRIQY------LDISVFKFNQELEYLDLSHNK-----LVKI 84

Query: 110 T--HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGT 159
           +     +L+ L+L +N  +     KE  ++  L+ L +    ++K  V    
Sbjct: 85  SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 8/97 (8%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
                 +  + L SL+++ N +   +             +K+L+L  N    SI   +  
Sbjct: 390 EKKGDCSWTKSLLSLNMSSNILTDTIFR------CLPPRIKVLDLHSNKI-KSIPKQVVK 442

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGN 148
           L +L+ LN+  N+L+ S+     D L  L+++ +  N
Sbjct: 443 LEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 90  NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK 149
              +LN+S N  +    S +  LS LR L +  NR++  +D+      ++LE LD+  NK
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNK 80

Query: 150 I 150
           +
Sbjct: 81  L 81

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
             P   L+ LDL+ N   +    +       ++ LK L LS      S +  + HL+   
Sbjct: 86  CHPTVNLKHLDLSFNAFDALPICK---EFGNMSQLKFLGLSTTHLEKSSVLPIAHLN--- 139

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEEL 143
              +     E   + ++ + L+D    
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTE 166

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 14/107 (13%), Positives = 33/107 (30%), Gaps = 5/107 (4%)

Query: 46  GGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSI 105
           G   +       T  + L    +  +                 +N+ + N + +      
Sbjct: 261 GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY----IYEIFSNMNIKNFTVSGTRMVH 316

Query: 106 LSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK 152
           +   + +S    L+   N L      +    L +LE L +  N++ +
Sbjct: 317 MLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKE 362

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.3 bits (118), Expect = 9e-08
 Identities = 30/153 (19%), Positives = 54/153 (35%), Gaps = 31/153 (20%)

Query: 17  GATDC-----CQWERVECSNTM---------SRVIALDLSDTYGGEYWYLNASLFTPFQQ 62
           G+  C     C+   V+CSN                L L++            +F    Q
Sbjct: 1   GSLACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVL--EATGIFKKLPQ 58

Query: 63  LESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGN---SFNNSILSSLTHLSSLRS 117
           L  ++ ++NKI        IE       + +  + L+ N   +  + +   L    SL++
Sbjct: 59  LRKINFSNNKITD------IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE---SLKT 109

Query: 118 LNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L L  NR+   +       L  +  L +  N+I
Sbjct: 110 LMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 15/102 (14%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-- 109
           +    F     +  + LT N++ +      +     L +LK L L  N      ++ +  
Sbjct: 72  IEEGAFEGASGVNEILLTSNRLENV--QHKM--FKGLESLKTLMLRSNR-----ITCVGN 122

Query: 110 ---THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGN 148
                LSS+R L+L+ N++  ++     D+L  L  L++  N
Sbjct: 123 DSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.9 bits (119), Expect = 9e-08
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 16/137 (11%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-- 109
           L     +   +L  L L+ N+I S   +  +       +L+ L++S N      L ++  
Sbjct: 67  LRMPDISFLSELRVLRLSHNRIRSL--DFHV--FLFNQDLEYLDVSHNR-----LQNISC 117

Query: 110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI-----DKFVVSKGTTNTIK 164
             ++SLR L+L +N  +     KE  +L  L  L +   K              +   + 
Sbjct: 118 CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD 177

Query: 165 NANLYKLAGFFAIWFII 181
             + +   G      I 
Sbjct: 178 LVSYHIKGGETESLQIP 194

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 56  LFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 115
                + +  L+L+ N +   V       L     +K+L+L  N    SI   +THL +L
Sbjct: 423 TCAWAESILVLNLSSNMLTGSVF----RCLPP--KVKVLDLHNNRI-MSIPKDVTHLQAL 475

Query: 116 RSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKID 151
           + LN+  N+L+ S+     D L  L+ + +  N  D
Sbjct: 476 QELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 11/129 (8%)

Query: 27  VECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLS 86
           + C  + S    L+ +     +         +  ++L++L L  N + +    +      
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTD---SVFQGCSTLKRLQTLILQRNGLKNF--FKVALMTK 400

Query: 87  RLNNLKMLNLSGNSFNNSILSSLTHL-SSLRSLNLFWNRLEGSIDVKELDSL-RDLEELD 144
            +++L+ L++S NS N+           S+  LNL  N L GS+       L   ++ LD
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV----FRCLPPKVKVLD 456

Query: 145 IGGNKIDKF 153
           +  N+I   
Sbjct: 457 LHNNRIMSI 465

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 6/112 (5%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNN--SILSSL 109
           ++            L+ T N     V        S L  L+ L L  N   N   +    
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQG----CSTLKRLQTLILQRNGLKNFFKVALMT 399

Query: 110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTN 161
            ++SSL +L++  N L      +       +  L++  N +   V       
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK 451

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 19/131 (14%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIERLS--RLNNLKMLNLSGNSFNNSILSS 108
            L+  +F   Q LE LD++ N++ +         +S   + +L+ L+LS N F+   +  
Sbjct: 90  SLDFHVFLFNQDLEYLDVSHNRLQN---------ISCCPMASLRHLDLSFNDFDVLPVCK 140

Query: 109 L-THLSSLRSLNLFWNRLEGSIDVKELDSLR------DLEELDIGGNKIDKFVVSKGTTN 161
              +L+ L  L L   +    +D+  +  L       DL    I G + +   +   T  
Sbjct: 141 EFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199

Query: 162 TIKNANLYKLA 172
            +        +
Sbjct: 200 HLVFHPNSLFS 210

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 23  QWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGI 82
           + +R E + + + + +L +       + +   +L++ F ++    L+ +           
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC-- 348

Query: 83  ERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEG-SIDVKELDSLRDLE 141
                 ++   LN + N F +S+    + L  L++L L  N L+          ++  LE
Sbjct: 349 --PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE 406

Query: 142 ELDIGGNKIDKFVVSKGTTNTIKNANLY 169
            LD+  N ++     +          L 
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLN 434

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 15/97 (15%)

Query: 55  SLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-THLS 113
            L      LE +   +N++        +  L  L  L  +    NS     L  L     
Sbjct: 167 KLPDLPPSLEFIAAGNNQLEE------LPELQNLPFLTAIYADNNS-----LKKLPDLPL 215

Query: 114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           SL S+    N LE   ++ EL +L  L  +    N +
Sbjct: 216 SLESIVAGNNILE---ELPELQNLPFLTTIYADNNLL 249

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 21/106 (19%)

Query: 61  QQLESLDLTDNKIAS-CVENEGIERLSRLNN-----------LKMLNLSGNSFNNSILSS 108
             LESL  + N +       + ++ L   NN           L+ L +S N      L  
Sbjct: 91  PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK--LPE 148

Query: 109 LTHLSSLRSLNLFWNRLEGSIDVKEL-DSLRDLEELDIGGNKIDKF 153
           L + S L+ +++  N L      K+L D    LE +  G N++++ 
Sbjct: 149 LQNSSFLKIIDVDNNSL------KKLPDLPPSLEFIAAGNNQLEEL 188

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 38/126 (30%)

Query: 55  SLFTPFQQLESLDLTDNKIASCVENEGIERLSRLN--------------NLKMLNLSGNS 100
           SL      LE L++++NK+          RL RL               NLK L++  N 
Sbjct: 311 SLCDLPPSLEELNVSNNKLIEL--PALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNP 368

Query: 101 F---------------NNSILSSLTHLSSLRSLNLFWNRLEGSIDVKEL-DSLRDLEELD 144
                           N+ +        +L+ L++  N L      +E  D    +E+L 
Sbjct: 369 LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL------REFPDIPESVEDLR 422

Query: 145 IGGNKI 150
           +   ++
Sbjct: 423 MNSERV 428

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 17/91 (18%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
            Q L  LD+++N  +   E           NL  LN S    +N I S      SL  LN
Sbjct: 276 PQSLTFLDVSENIFSGLSE--------LPPNLYYLNAS----SNEIRSLCDLPPSLEELN 323

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           +  N+L   +          LE L    N +
Sbjct: 324 VSNNKLI-ELP----ALPPRLERLIASFNHL 349

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 15/104 (14%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-- 109
           L +  F    +L  L L DNK+ +     GI     L NL+ L ++ N      L +L  
Sbjct: 52  LPSKAFHRLTKLRLLYLNDNKLQTL--PAGI--FKELKNLETLWVTDNK-----LQALPI 102

Query: 110 ---THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
                L +L  L L  N+L+ S+  +  DSL  L  L +G N++
Sbjct: 103 GVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL 145

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 15/104 (14%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-- 109
           L A +F   + LE+L +TDNK+ +     G+    +L NL  L L  N      L SL  
Sbjct: 76  LPAGIFKELKNLETLWVTDNKLQAL--PIGV--FDQLVNLAELRLDRNQ-----LKSLPP 126

Query: 110 ---THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
                L+ L  L+L +N L+ S+     D L  L+EL +  N++
Sbjct: 127 RVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQL 169

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 19/106 (17%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSRL-----NNLKMLNLSGNSFNN----SILSSLTH 111
           + L  L +++N++    E+ G+  L +      + L++L L+    ++    S+ ++L  
Sbjct: 341 RFLLELQISNNRL----EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396

Query: 112 LSSLRSLNLFWNRLEGSIDVKEL-DSLRD----LEELDIGGNKIDK 152
             SLR L+L  N L G   + +L +S+R     LE+L +      +
Sbjct: 397 NHSLRELDLSNNCL-GDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.6 bits (114), Expect = 5e-07
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 15/100 (15%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSR-LNNLKMLNLSGNSFNN----SILSSLTHLSSL 115
             ++SLD+   ++     +     L   L   +++ L            I S+L    +L
Sbjct: 3   LDIQSLDIQCEEL----SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 58

Query: 116 RSLNLFWNRLEGSIDVKEL-DSLRD----LEELDIGGNKI 150
             LNL  N L G + V  +   L+     +++L +    +
Sbjct: 59  AELNLRSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCL 97

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 19/111 (17%)

Query: 54  ASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL-----NNLKMLNLSGNSFNN----S 104
           +S       L  L+L  N++     + G+  + +        ++ L+L            
Sbjct: 49  SSALRVNPALAELNLRSNEL----GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104

Query: 105 ILSSLTHLSSLRSLNLFWNRLEGSIDVKEL-DSLRD----LEELDIGGNKI 150
           + S+L  L +L+ L+L  N L G   ++ L + L D    LE+L +    +
Sbjct: 105 LSSTLRTLPTLQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 19/111 (17%)

Query: 54  ASLFTPFQQLESLDLTDNKIASCVENEGIERLSR-----LNNLKMLNLSGNSFNN----S 104
             +      L  L L  NK+     + G+  L        + L+ L +            
Sbjct: 220 CGIVASKASLRELALGSNKL----GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGD 275

Query: 105 ILSSLTHLSSLRSLNLFWNRLEGSIDVKEL-DSLRD----LEELDIGGNKI 150
           +   L    SL+ L+L  N L G    + L ++L +    LE L +     
Sbjct: 276 LCRVLRAKESLKELSLAGNEL-GDEGARLLCETLLEPGCQLESLWVKSCSF 325

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 19/104 (18%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSRL-----NNLKMLNLSGNSFNN----SILSSLTH 111
           + L+ L L  N++     +EG   L          L+ L +   SF         S L  
Sbjct: 284 ESLKELSLAGNEL----GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339

Query: 112 LSSLRSLNLFWNRLEGSIDVKEL-DSLRD----LEELDIGGNKI 150
              L  L +  NRL     V+EL   L      L  L +    +
Sbjct: 340 NRFLLELQISNNRL-EDAGVRELCQGLGQPGSVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 16/112 (14%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL----NNLKMLNLSGNSFNNS-- 104
            L   L  P  +L +L + +  I      +G   L R+     +LK L+L+GN   +   
Sbjct: 246 ELCPGLLHPSSRLRTLWIWECGI----TAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 105 --ILSSLTH-LSSLRSLNLFWNRL--EGSIDVKE-LDSLRDLEELDIGGNKI 150
             +  +L      L SL +                L   R L EL I  N++
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 25/113 (22%), Positives = 37/113 (32%), Gaps = 16/113 (14%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIERLS----RLNNLKMLNLSGNSFNNSIL 106
            L  +L  P  QLESL +                 S    +   L  L +S N   ++ +
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSF----TAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358

Query: 107 SSL-----THLSSLRSLNLFWNRL--EGSIDVKE-LDSLRDLEELDIGGNKID 151
             L        S LR L L    +       +   L +   L ELD+  N + 
Sbjct: 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 18/126 (14%)

Query: 39  LDLSDTYGGEY--WYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL----NNLK 92
           L LSD   G+     L   L  P  +LE L L    +++       E L+ +     + K
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA----ASCEPLASVLRAKPDFK 173

Query: 93  MLNLSGNSFNNSILSSL-----THLSSLRSLNLFWNRL--EGSIDVKE-LDSLRDLEELD 144
            L +S N  N + +  L          L +L L    +  +   D+   + S   L EL 
Sbjct: 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233

Query: 145 IGGNKI 150
           +G NK+
Sbjct: 234 LGSNKL 239

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 16/109 (14%)

Query: 54  ASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL----NNLKMLNLSGNSFNNS----I 105
           A L    QQ + + L D  +         + +S        L  LNL  N   +     +
Sbjct: 21  AELLPLLQQCQVVRLDDCGLTE----ARCKDISSALRVNPALAELNLRSNELGDVGVHCV 76

Query: 106 LSSLTHLS-SLRSLNLFWNRL--EGSIDVKE-LDSLRDLEELDIGGNKI 150
           L  L   S  ++ L+L    L   G   +   L +L  L+EL +  N +
Sbjct: 77  LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 15/104 (14%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGN---SFNNSIL 106
           +    F+P+++L  +DL++N+I+       +       L +L  L L GN       S+ 
Sbjct: 47  IPPGAFSPYKKLRRIDLSNNQISE------LAPDAFQGLRSLNSLVLYGNKITELPKSLF 100

Query: 107 SSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
             L    SL+ L L  N++   + V     L +L  L +  NK+
Sbjct: 101 EGLF---SLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 19/94 (20%)

Query: 64  ESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL-----THLSSLR 116
             + L  N I        I     S    L+ ++LS N      +S L       L SL 
Sbjct: 35  TEIRLEQNTIKV------IPPGAFSPYKKLRRIDLSNNQ-----ISELAPDAFQGLRSLN 83

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           SL L+ N++   +     + L  L+ L +  NKI
Sbjct: 84  SLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKI 116

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 11/101 (10%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILS---- 107
           +    F+ F  LE ++++ N +   +E +    L +L+ +++         N++L     
Sbjct: 45  IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK------ANNLLYINPE 98

Query: 108 SLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGN 148
           +  +L +L+ L +    ++  +             LDI  N
Sbjct: 99  AFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDN 138

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 20/99 (20%), Positives = 27/99 (27%), Gaps = 3/99 (3%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           L         Q   LD+ DN     +E      LS      +L L+ N       S+   
Sbjct: 119 LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--FESVILWLNKNGIQEIHNSAFNG 176

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
                      N LE  +             LDI   +I
Sbjct: 177 TQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRI 214

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 63  LESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSI-LSSLTHLSSLRSLNLF 121
              L     K+    +       S   +L+ + +S N     I     ++L  L  + + 
Sbjct: 32  AIELRFVLTKLRVIQKGA----FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 122 -WNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
             N L   I+ +   +L +L+ L I    I   
Sbjct: 88  KANNLL-YINPEAFQNLPNLQYLLISNTGIKHL 119

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 37.9 bits (88), Expect = 9e-04
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           L   +F        LD++  +I S + + G   L  L  L+  +      N   L +L  
Sbjct: 193 LPNDVFHGASGPVILDISRTRIHS-LPSYG---LENLKKLRARSTY----NLKKLPTLEK 244

Query: 112 LSSLRSLNLFWNR 124
           L +L   +L +  
Sbjct: 245 LVALMEASLTYPS 257

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 19/106 (17%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSRL-----NNLKMLNLSGNSFNNS----ILSSLTH 111
             + SLDL+ N +      +    L+ +     N++  LNL  N  +      +      
Sbjct: 196 ASVTSLDLSANLL----GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251

Query: 112 LSSLRSLNLFWNRL-----EGSIDVKE-LDSLRDLEELDIGGNKID 151
           L  L+++ L ++ +     E    +     +++ +  +D  G +I 
Sbjct: 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 22/135 (16%)

Query: 34  SRVIALDLSDTYGGEY--WYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL--- 88
             +  LDL               +       + SL+L  N +      +  + L ++   
Sbjct: 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL----GIKSSDELIQILAA 164

Query: 89  --NNLKMLNLSGNSFNNS----ILSSLTHL-SSLRSLNLFWNRLEGSIDVKELDSL---- 137
              N+  LNL GN+  +     +   L  + +S+ SL+L  N L G     EL  +    
Sbjct: 165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL-GLKSYAELAYIFSSI 223

Query: 138 -RDLEELDIGGNKID 151
              +  L++  N + 
Sbjct: 224 PNHVVSLNLCLNCLH 238

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 22/134 (16%)

Query: 34  SRVIALDLSDTYGGEY--WYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL--- 88
             V +LDLS           L  +       + SL+L+ N +      +  + L ++   
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL----GFKNSDELVQILAA 77

Query: 89  --NNLKMLNLSGNSFNN----SILSSLTHL-SSLRSLNLFWNRLEGSIDVKEL-DSLRD- 139
              N+  LNLSGN  +      ++ +L  +  ++  L+L WN    S    E   +  + 
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNL 136

Query: 140 ---LEELDIGGNKI 150
              +  L++ GN +
Sbjct: 137 PASITSLNLRGNDL 150

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 11/86 (12%), Positives = 30/86 (34%), Gaps = 15/86 (17%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL----NNLKMLNLSGNSFNN--- 103
            L     +    + SL+L  N +        +E L  L     +L+ + L  +   N   
Sbjct: 215 ELAYIFSSIPNHVVSLNLCLNCL----HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSK 270

Query: 104 ----SILSSLTHLSSLRSLNLFWNRL 125
               ++ ++  ++  +  ++     +
Sbjct: 271 EQCKALGAAFPNIQKIILVDKNGKEI 296

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.0 bits (115), Expect = 4e-07
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 63  LESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFW 122
             +L+L    +    +        RL++L+ + +        +  ++   + L +L L  
Sbjct: 83  RVALELRSVPLPQFPDQ-----AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLAR 136

Query: 123 NRLEGSIDVKELDSLRDLEELDIGGN 148
           N L  ++    + SL  L EL I   
Sbjct: 137 NPLR-ALP-ASIASLNRLRELSIRAC 160

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 6e-07
 Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 120
           Q L+SL + ++ +++         +  L  L+ L+L G +   +        + L+ L L
Sbjct: 206 QNLKSLKIRNSPLSALGPA-----IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260

Query: 121 FW-NRLEGSIDVKELDSLRDLEELDIGGNK 149
              + L  ++   ++  L  LE+LD+ G  
Sbjct: 261 KDCSNLL-TLP-LDIHRLTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 18/101 (17%)

Query: 60  FQQLESLDLTDNKIASCVENEGI-ERLSRLNNLKMLNLSGNS---------FNNSILSSL 109
           F  LE+L L  N + +      +   ++ LN L+ L++              +       
Sbjct: 126 FAGLETLTLARNPLRA------LPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
             L +L+SL L W  +  S+    + +L++L+ L I  + +
Sbjct: 180 QGLVNLQSLRLEWTGIR-SLP-ASIANLQNLKSLKIRNSPL 218

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 10/96 (10%), Positives = 22/96 (22%), Gaps = 3/96 (3%)

Query: 55  SLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS 114
                     +  +      +      +   +       L L               LS 
Sbjct: 47  HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSH 105

Query: 115 LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           L+ + +    L   +    +     LE L +  N +
Sbjct: 106 LQHMTIDAAGLM-ELP-DTMQQFAGLETLTLARNPL 139

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 61  QQLESLDLTDNKI-----ASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL 115
            +L  L +                +       L NL+ L L       S+ +S+ +L +L
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL 208

Query: 116 RSLNLFWNRLEGSIDVKELDSLRDLEELDIGGN 148
           +SL +  + L        +  L  LEELD+ G 
Sbjct: 209 KSLKIRNSPLSALGP--AIHHLPKLEELDLRGC 239

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 5e-07
 Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN 119
              + +L + DN + S               L+ L +SGN    S+      L  L   +
Sbjct: 60  PAHITTLVIPDNNLTSLPAL--------PPELRTLEVSGNQLT-SLPVLPPGLLELSIFS 110

Query: 120 LFWNRLEGSID-VKELD-----------SLRDLEELDIGGNKIDKF 153
                L      + +L                L+EL +  N++   
Sbjct: 111 NPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASL 156

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 9e-06
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 37/121 (30%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLN--------------NLKMLNLSGNSFNN-- 103
              L+ L ++DN++AS         L +L                L+ L++S N   +  
Sbjct: 140 PPGLQELSVSDNQLASL--PALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLP 197

Query: 104 SILSSLTHL--------------SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK 149
           ++ S L  L              S L+ L +  NRL  S+         +L+EL + GN+
Sbjct: 198 TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLP----VLPSELKELMVSGNR 252

Query: 150 I 150
           +
Sbjct: 253 L 253

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 9e-06
 Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 15/90 (16%)

Query: 62  QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-THLSSLRSLNL 120
               L++ ++ + +  +           ++  L +  N+     L+SL      LR+L +
Sbjct: 41  GNAVLNVGESGLTTLPDCLP-------AHITTLVIPDNN-----LTSLPALPPELRTLEV 88

Query: 121 FWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
             N+L  S+       L +L         +
Sbjct: 89  SGNQLT-SLP-VLPPGLLELSIFSNPLTHL 116

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 25/105 (23%)

Query: 60  FQQLESLDLTDNKIAS-CVENEGIERLSRLNN-----------LKMLNLSGNSFNNSILS 107
              L+ L ++DN++AS       + +L   NN           LK L +SGN      L+
Sbjct: 180 PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR-----LT 234

Query: 108 SL-THLSSLRSLNLFWNRLEGSIDVKEL-DSLRDLEELDIGGNKI 150
           SL    S L+ L +  NRL        L      L  L +  N++
Sbjct: 235 SLPVLPSELKELMVSGNRLT------SLPMLPSGLLSLSVYRNQL 273

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 16/91 (17%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-THLSSLRSLN 119
             L+ L ++ N++ S             + LK L +SGN      L+SL    S L SL+
Sbjct: 221 SGLKELIVSGNRLTSLPVL--------PSELKELMVSGNR-----LTSLPMLPSGLLSLS 267

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
           ++ N+L   +  + L  L     +++ GN +
Sbjct: 268 VYRNQLT-RLP-ESLIHLSSETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 38.3 bits (89), Expect = 7e-04
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 11/66 (16%)

Query: 62  QLESLDLTDNKIASCVENEGIERLSR-LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 120
           +L+ L ++ N++ S         L    + L  L++  N     +  SL HLSS  ++NL
Sbjct: 242 ELKELMVSGNRLTS---------LPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291

Query: 121 FWNRLE 126
             N L 
Sbjct: 292 EGNPLS 297

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 13/106 (12%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
            +         L SLD  ++ I        +  + +L  L  L  + N+     LS  T 
Sbjct: 33  TDTISEEQLATLTSLDCHNSSITD------MTGIEKLTGLTKLICTSNNITTLDLSQNT- 85

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSK 157
             +L  L    N+L  ++D   +  L  L  L+   NK+ K  VS+
Sbjct: 86  --NLTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKLTKLDVSQ 125

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 18/114 (15%)

Query: 57  FTPFQQLESLDLTDNKIAS-------------CVENEGIERLSRLNNLKMLNLSGNSFNN 103
            TP  QL   D + N +               C++ + +  +   +N +++         
Sbjct: 229 VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD-LLEIDLTHNTQLIYFQAEGCRK 287

Query: 104 SILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSK 157
                +TH + L  L+     +   +D   L     L  L +   ++ +  VS 
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGIT-ELD---LSQNPKLVYLYLNNTELTELDVSH 337

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 14/101 (13%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
                 L  L  T N I +      ++ LS+  NL  L    N   N  ++ LT    L 
Sbjct: 60  IEKLTGLTKLICTSNNITT------LD-LSQNTNLTYLACDSNKLTNLDVTPLT---KLT 109

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSK 157
            LN   N+L   +DV +      L  L+   N + +  VS 
Sbjct: 110 YLNCDTNKLT-KLDVSQNPL---LTYLNCARNTLTEIDVSH 146

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 13/120 (10%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH 111
           +     T   QL  LD     I        ++ LS+   L  L L+       +   ++H
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGITE------LD-LSQNPKLVYLYLNNTEL-TEL--DVSH 337

Query: 112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKL 171
            + L+SL+     ++   D   +  +  L        +         T N++  A    L
Sbjct: 338 NTKLKSLSCVNAHIQ---DFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDL 394

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 14/111 (12%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
            +  + L  L+   N I        ++ L++   L  L+ S N         +T L+ L 
Sbjct: 187 VSQNKLLNRLNCDTNNITK------LD-LNQNIQLTFLDCSSNKLTE---IDVTPLTQLT 236

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNAN 167
             +   N L   +DV  L     L  L      + +  ++  T      A 
Sbjct: 237 YFDCSVNPLT-ELDVSTLSK---LTTLHCIQTDLLEIDLTHNTQLIYFQAE 283

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 57  FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR 116
            +    L  L+   N +           +S    L  L+   N         +T  + L 
Sbjct: 123 VSQNPLLTYLNCARNTLTEID-------VSHNTQLTELDCHLN--KKITKLDVTPQTQLT 173

Query: 117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSK 157
           +L+  +N++   +DV +      L  L+   N I K  +++
Sbjct: 174 TLDCSFNKIT-ELDVSQNKL---LNRLNCDTNNITKLDLNQ 210

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 89  NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGN 148
           +N      +      +   S   L++L SL+   + +    D+  ++ L  L +L    N
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSN 74

Query: 149 KIDKFVVSK 157
            I    +S+
Sbjct: 75  NITTLDLSQ 83

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 18/112 (16%)

Query: 54  ASLFTPFQQLESLDLTDNKIASCVENEGIER-----LSRLNNLKMLNLSGNSFNN----S 104
           A  F   + L ++ +  N I      EGIE      L+    LK+L+L  N+F +    +
Sbjct: 180 AKTFQSHRLLHTVKMVQNGI----RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235

Query: 105 ILSSLTHLSSLRSLNLFWNRL--EGSIDVKE---LDSLRDLEELDIGGNKID 151
           +  +L    +LR L L    L   G+  V +         L+ L +  N+I+
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 22/110 (20%), Positives = 34/110 (30%), Gaps = 24/110 (21%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSRL----NNLKMLNLSGNSF-------------NN 103
            +L ++ L+DN           E L         L+ L L  N                 
Sbjct: 94  PKLHTVRLSDNAF----GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149

Query: 104 SILSSLTHLSSLRSLNLFWNRL--EGSIDV-KELDSLRDLEELDIGGNKI 150
           ++     +   LRS+    NRL      +  K   S R L  + +  N I
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI 199

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 23/108 (21%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSRL----NNLKMLNLSGNSFNN----------SIL 106
             ++ + L+ N I      E    LS       +L++   S                 +L
Sbjct: 32  DSVKEIVLSGNTI----GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87

Query: 107 SSLTHLSSLRSLNLFWNRLEGSIDVKE----LDSLRDLEELDIGGNKI 150
            +L     L ++ L  N   G    +     L     LE L +  N +
Sbjct: 88  QALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTPLEHLYLHNNGL 134

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 24/114 (21%)

Query: 61  QQLESLDLTDNKIASCVENEGI-------ERLSRLNNLKMLNLSGNSFNN----SILSSL 109
           + LE  + +D      V++E         + L +   L  + LS N+F       ++  L
Sbjct: 60  KDLEIAEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 118

Query: 110 THLSSLRSLNLFWNR------------LEGSIDVKELDSLRDLEELDIGGNKID 151
           +  + L  L L  N             L+     K+  +   L  +  G N+++
Sbjct: 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 16/105 (15%), Positives = 35/105 (33%), Gaps = 21/105 (20%)

Query: 63  LESLDLTDNKIASCVENEGIERLSRL----NNLKMLNLSGNSFNN----SILSSLTHLSS 114
           +E   L  + I      E  + +  +    +++K + LSGN+        +  ++     
Sbjct: 6   IEGKSLKLDAI----TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61

Query: 115 LRSLNL---FWNRLEGSID------VKELDSLRDLEELDIGGNKI 150
           L        F  R++  I       ++ L     L  + +  N  
Sbjct: 62  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 22/111 (19%), Positives = 33/111 (29%), Gaps = 22/111 (19%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSRL------NNLKMLNLSGNSFNNSILSSL----- 109
             L  L L D  +       G   +           L+ L L  N      + +L     
Sbjct: 244 PNLRELGLNDCLL----SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299

Query: 110 THLSSLRSLNLFWNRL--EGSI-----DVKELDSLRDLEELDIGGNKIDKF 153
             +  L  L L  NR   E  +     +V       +L+ELD      D+ 
Sbjct: 300 EKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEE 350

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 22/146 (15%), Positives = 50/146 (34%), Gaps = 29/146 (19%)

Query: 20  DCCQWERVECSNTMSRVI--------ALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDN 71
           +C Q E    +    + I         L L +T+      + +  F+    +  + ++ +
Sbjct: 9   ECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRT---IPSHAFSNLPNISRIYVSID 65

Query: 72  -KIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILSSL-----THLSSLRSLNLFWN 123
             +        +E      L+ +  + +     N   L+ +       L  L+ L +F  
Sbjct: 66  VTLQQ------LESHSFYNLSKVTHIEIR----NTRNLTYIDPDALKELPLLKFLGIFNT 115

Query: 124 RLEGSIDVKELDSLRDLEELDIGGNK 149
            L+   D+ ++ S      L+I  N 
Sbjct: 116 GLKMFPDLTKVYSTDIFFILEITDNP 141

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 63  LESLDLTDNKIASCVENEGIER--LSRLNNLKMLNLSGNSFNNSILS-SLTHLSSLRSLN 119
            ++L L +  + +      I     S L N+  + +S +     + S S  +LS +  + 
Sbjct: 33  TQTLKLIETHLRT------IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 153
           +   R    ID   L  L  L+ L I    +  F
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF 120

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 4/99 (4%)

Query: 53  NASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112
           + +          L++TDN   + +     + L   N    L L  N F  S+     + 
Sbjct: 122 DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC--NETLTLKLYNNGFT-SVQGYAFNG 178

Query: 113 SSLRSLNLFWNRLEGSIDVKELDSLR-DLEELDIGGNKI 150
           + L ++ L  N+    ID      +      LD+    +
Sbjct: 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 15/106 (14%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 51  YLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSI-LSSL 109
           Y++         L+ L + +  +        + ++   +   +L ++ N +  SI +++ 
Sbjct: 95  YIDPDALKELPLLKFLGIFNTGLKM---FPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 110 THLSS-LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFV 154
             L +   +L L+ N    S+     +  + L+ + +  NK    +
Sbjct: 152 QGLCNETLTLKLYNNGFT-SVQGYAFNGTK-LDAVYLNKNKYLTVI 195

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 31/117 (26%)

Query: 54  ASLFTPFQQLESLDLTDNKIASCVENEGIERL--SRLNNLKMLNLSGN---SFNNSILSS 108
           A  F+ + + E   L          NE +  L    +N    L L+     S  +++   
Sbjct: 27  ADYFSAWDKWEKQALPGENR-----NEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQ 81

Query: 109 LTHL--------------SSLRSLNLFWNRLEGSIDVKEL-DSLRDLEELDIGGNKI 150
           +T L              +SL  L+   NRL        L +    L+ LD+  N++
Sbjct: 82  ITVLEITQNALISLPELPASLEYLDACDNRLS------TLPELPASLKHLDVDNNQL 132

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 21/93 (22%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-THLSSLRSL 118
             Q+  L++T N + S              +L+ L+   N      LS+L    +SL+ L
Sbjct: 79  PPQITVLEITQNALISL--------PELPASLEYLDACDNR-----LSTLPELPASLKHL 125

Query: 119 NLFWNRLEGSIDVKEL-DSLRDLEELDIGGNKI 150
           ++  N+L        L +    LE ++   N++
Sbjct: 126 DVDNNQLT------MLPELPALLEYINADNNQL 152

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.6 bits (105), Expect = 7e-06
 Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 29/107 (27%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLSRLN--------------NLKMLNLSGNSFNNSI 105
              LE LD  DN++++    E    L  L+               L+ +N   N      
Sbjct: 99  PASLEYLDACDNRLSTL--PELPASLKHLDVDNNQLTMLPELPALLEYINADNNQ----- 151

Query: 106 LSSLTH-LSSLRSLNLFWNRLEGSIDVKEL-DSLRDLEELDIGGNKI 150
           L+ L    +SL  L++  N+L        L +    LE LD+  N +
Sbjct: 152 LTMLPELPTSLEVLSVRNNQLT------FLPELPESLEALDVSTNLL 192

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 13/93 (13%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGN---SFNNSILSSLTHLSSLRS 117
             LE L + +N++    E           +L+ L++S N   S     + +     +   
Sbjct: 160 TSLEVLSVRNNQLTFLPEL--------PESLEALDVSTNLLESLPAVPVRNHHSEETEIF 211

Query: 118 LNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
                NR+   I  + + SL     + +  N +
Sbjct: 212 FRCRENRIT-HIP-ENILSLDPTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 14/92 (15%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNL 120
             LE ++  +N++                +L++L++  N      L  L    SL +L++
Sbjct: 140 ALLEYINADNNQLTML--------PELPTSLEVLSVRNNQLTF--LPEL--PESLEALDV 187

Query: 121 FWNRLEG-SIDVKELDSLRDLE-ELDIGGNKI 150
             N LE             + E       N+I
Sbjct: 188 STNLLESLPAVPVRNHHSEETEIFFRCRENRI 219

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 61  QQLESLDLTDNKIASCVENEGIERLSR-LNNLKMLNLSGNSF-NNSILSSLTHLSSLRSL 118
           + +  L+L+       ++   +  L R   NL  L+LS +    N        L+ L+ L
Sbjct: 195 ETITQLNLSG--YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252

Query: 119 NLFWNRLEGSIDVKELDSLRDLEELDIGG 147
           +L          + EL  +  L+ L + G
Sbjct: 253 SLSRCYDIIPETLLELGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 54  ASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSG-NSFNNSILSSLTHL 112
           ++L      L  LDL+D+     ++N+  +   +LN L+ L+LS         L  L  +
Sbjct: 215 STLVRRCPNLVHLDLSDS---VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271

Query: 113 SSLRSLNLFWNRLEGSIDV 131
            +L++L +F    +G++ +
Sbjct: 272 PTLKTLQVFGIVPDGTLQL 290

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 26/139 (18%), Positives = 57/139 (41%), Gaps = 13/139 (9%)

Query: 18  ATDCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASL-------FTPFQQLESLDLTD 70
           A+D   W+ ++ +             + G   +    S             +++ +DL++
Sbjct: 43  ASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSN 102

Query: 71  NKIASCVENEGIERL-SRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSI 129
               S +E   +  + S+ + L+ L+L G   ++ I+++L   S+L  LNL         
Sbjct: 103 ----SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 158

Query: 130 DVKEL-DSLRDLEELDIGG 147
            ++ L  S   L+EL++  
Sbjct: 159 ALQTLLSSCSRLDELNLSW 177

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 9/100 (9%)

Query: 55  SLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSF--NNSI--LSSLT 110
           +      +++++D TD    SC+ + G + +  L  ++ + L    +  +  +  LS L 
Sbjct: 55  TGPLDKYKIQAIDATD----SCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE 110

Query: 111 HLS-SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK 149
           +L  S+  + +          +  L   R+L+ L +    
Sbjct: 111 NLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 11/116 (9%)

Query: 35  RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNN---- 90
           ++ A+D +D+      + +       Q +E + L        +E+  +ERLS+L N    
Sbjct: 62  KIQAIDATDSCIMSIGFDH---MEGLQYVEKIRLCKCH---YIEDGCLERLSQLENLQKS 115

Query: 91  LKMLNLSGNS-FNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDI 145
           +  + +       +  + +L H  +L+ L L         +         L  L++
Sbjct: 116 MLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 8/73 (10%)

Query: 82  IERLSRLNNLKMLNLSGNSFNNSILS----SLTHLSSLRSLNLFWNRLEGSIDVKELDSL 137
           +  L    NL  L +        +       L  L  LR+L +  + L   +        
Sbjct: 24  LHHLPGAENLTELYIENQ---QHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFT 79

Query: 138 RDLEELDIGGNKI 150
             L  L++  N +
Sbjct: 80  PRLSRLNLSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 38.6 bits (89), Expect = 6e-04
 Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 19/117 (16%)

Query: 21  CCQWER-VECSN-----------TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDL 68
           C      + C+                +  L +         +L         +L +L +
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIE--NQQHLQHLELRDLRGLGELRNLTI 63

Query: 69  TDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRL 125
             + +   V     +       L  LNLS N+   S+        SL+ L L  N L
Sbjct: 64  VKSGL-RFVAP---DAFHFTPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPL 115

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 13/103 (12%)

Query: 60  FQQLESLDL---TDNKI--ASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH--- 111
              LE L L    ++            +    R  NLK L +      N ++        
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277

Query: 112 LSSLRSLNLFWNRLEGSIDVKEL----DSLRDLEELDIGGNKI 150
           L  L ++++    L      + L    D ++ L+ +++  N +
Sbjct: 278 LPQLETMDISAGVL-TDEGARLLLDHVDKIKHLKFINMKYNYL 319

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 24/142 (16%)

Query: 22  CQWERVEC-SNTMSRVIALDLSDTYGGEYWYLNASL-----FTPFQQLESLDLTDNKIAS 75
            +  +      +++  +  +       +    N+ +           +  L L  NK+  
Sbjct: 19  AETIKANLKKKSVTDAVTQN-ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD 77

Query: 76  CVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-----THLSSLRSLNLFWNRLEGSID 130
                 I  L  L NL  L L+GN      L SL       L++L+ L L  N+L+ S+ 
Sbjct: 78  ------ISALKELTNLTYLILTGNQ-----LQSLPNGVFDKLTNLKELVLVENQLQ-SLP 125

Query: 131 VKELDSLRDLEELDIGGNKIDK 152
               D L +L  L++  N++  
Sbjct: 126 DGVFDKLTNLTYLNLAHNQLQS 147

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 18/104 (17%)

Query: 60  FQQLESLDLTDNKIASCVENEGIERLS---RLNN--LKMLNLSGNSFNNS----ILSSLT 110
           F +   L L  N +      E  + L      +   +  L LS N    +    ++  L 
Sbjct: 125 FLRARKLGLQLNSL----GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180

Query: 111 HLSSLRSLNLFWNRLEGSIDVKEL-DSLRD---LEELDIGGNKI 150
             +S+  L+L    L G   ++ L   L     L+EL++  N  
Sbjct: 181 GNTSVTHLSLLHTGL-GDEGLELLAAQLDRNRQLQELNVAYNGA 223

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 15/104 (14%)

Query: 52  LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-- 109
           L+ + F    +L  L+L  N++ + +   G+     L  L  L L+ N      L+SL  
Sbjct: 50  LSDATFRGLTKLTWLNLDYNQLQT-LS-AGV--FDDLTELGTLGLANNQ-----LASLPL 100

Query: 110 ---THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
               HL+ L  L L  N+L+ S+     D L  L+EL +  N++
Sbjct: 101 GVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL 143

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 16/92 (17%)

Query: 64  ESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT-----HLSSLRSL 118
             L L  N+     +      LS   +L +++LS N      +S+L+     +++ L +L
Sbjct: 34  TELYLDGNQFTLVPK-----ELSNYKHLTLIDLSNNR-----ISTLSNQSFSNMTQLLTL 83

Query: 119 NLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            L +NRL   I  +  D L+ L  L + GN I
Sbjct: 84  ILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDI 114

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 21/144 (14%), Positives = 47/144 (32%), Gaps = 21/144 (14%)

Query: 21  CCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDL-----------T 69
           C  W  +E          + + + Y        A++   F ++ S++L            
Sbjct: 34  CKSWYEIERWCRRK----VFIGNCYA----VSPATVIRRFPKVRSVELKGKPHFADFNLV 85

Query: 70  DNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-THLSSLRSLNLFWNRLEGS 128
            +     V        S    L+ + L      +  L  +     + + L L       +
Sbjct: 86  PDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145

Query: 129 IDVKEL-DSLRDLEELDIGGNKID 151
             +  +  + R+L+ELD+  + +D
Sbjct: 146 DGLAAIAATCRNLKELDLRESDVD 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.77
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.76
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.76
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.73
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.73
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.72
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.71
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.7
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.7
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.69
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.69
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.69
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.69
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.69
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.69
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.69
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.68
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.67
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.66
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.65
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.65
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.65
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.65
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.65
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.65
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.64
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.64
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.64
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.63
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.63
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.63
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.62
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.62
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.6
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.59
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.59
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.59
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.59
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.59
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.59
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.58
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.58
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.58
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.57
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.57
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.57
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.56
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.56
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.56
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.55
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.55
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.55
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.55
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.54
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.54
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.54
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.53
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.53
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.53
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.53
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.52
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.52
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.51
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.51
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.51
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.51
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.51
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.51
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.51
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.5
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.5
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.49
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.49
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.48
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.47
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.47
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.47
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.46
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.46
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.42
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.37
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.35
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.32
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.29
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.29
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.29
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.28
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.27
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.27
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.27
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.25
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.24
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.1
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.1
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.92
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.87
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.78
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.76
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.7
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.7
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.58
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.43
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.34
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.3
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.22
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.14
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.09
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.05
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.01
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.66
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.66
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.59
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.32
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.99
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.92
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.87
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.66
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.66
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.48
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.4

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.86  E-value=8.7e-22  Score=154.11  Aligned_cols=162  Identities=21%  Similarity=0.309  Sum_probs=132.8

Q ss_pred             ccCCCCCCCCCCCC--ceeEEecCCC--CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCC-CcCCCcchhhhhhh
Q 038485           10 KDRKNGEGATDCCQ--WERVECSNTM--SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTD-NKIASCVENEGIER   84 (184)
Q Consensus        10 ~~~~~~~~~~~~c~--~~gv~c~~~~--~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~-n~l~~~~p~~~~~~   84 (184)
                      .++.|+. +.++|.  |.||.|....  .++++|+++++.+.+...++ ..+..+++|++|++++ |.+.+..|..    
T Consensus        23 ~l~~W~~-~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~-~~l~~l~~L~~L~L~~~n~l~~~~p~~----   96 (313)
T 1ogq_A           23 TLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPA----   96 (313)
T ss_dssp             GGTTCCT-TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECC-GGGGGCTTCSEEEEEEETTEESCCCGG----
T ss_pred             cccCCCC-CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccC-hhHhCCCCCCeeeCCCCCcccccCChh----
Confidence            5788974 678898  9999998633  79999999999997421244 4568899999999995 8898888877    


Q ss_pred             hcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCcccccccc
Q 038485           85 LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIK  164 (184)
Q Consensus        85 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~  164 (184)
                      +..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++.+|  ..+..+.
T Consensus        97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~  173 (313)
T 1ogq_A           97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIP--DSYGSFS  173 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCEEECC--GGGGCCC
T ss_pred             HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh-HHhcCCCCCeEECcCCcccCcCC--HHHhhhh
Confidence            88999999999999999888888999999999999999999877776 78899999999999999987666  3344565


Q ss_pred             -ceeeccccccceeeEE
Q 038485          165 -NANLYKLAGFFAIWFI  180 (184)
Q Consensus       165 -~L~~~~l~~~~~~~~~  180 (184)
                       .|+.+++++|.+.+.+
T Consensus       174 ~~L~~L~L~~N~l~~~~  190 (313)
T 1ogq_A          174 KLFTSMTISRNRLTGKI  190 (313)
T ss_dssp             TTCCEEECCSSEEEEEC
T ss_pred             hcCcEEECcCCeeeccC
Confidence             7777888888877543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.85  E-value=1.3e-20  Score=141.26  Aligned_cols=150  Identities=19%  Similarity=0.267  Sum_probs=131.8

Q ss_pred             CCCCCCCceeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcC
Q 038485           17 GATDCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSR   87 (184)
Q Consensus        17 ~~~~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~   87 (184)
                      .+++.|+|.+|.|...         +.+++.|++++|.+..   +.+..|..+++|++|++++|.+....+..    |..
T Consensus        14 ~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~N~l~~i~~~~----~~~   86 (229)
T 3e6j_A           14 PSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITK---LEPGVFDSLINLKELYLGSNQLGALPVGV----FDS   86 (229)
T ss_dssp             CTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTT
T ss_pred             CCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCc---cCHHHhhCccCCcEEECCCCCCCCcChhh----ccc
Confidence            3899999999999762         4578999999999997   77788899999999999999998776665    789


Q ss_pred             CCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCcccccccccee
Q 038485           88 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNAN  167 (184)
Q Consensus        88 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~  167 (184)
                      +++|+.|++++|.++...+..+..+++|+.|++++|.++ .+|. .+..+++|++|++++|++++.++  ..+..+++|.
T Consensus        87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~  162 (229)
T 3e6j_A           87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPR-GIERLTHLTHLALDQNQLKSIPH--GAFDRLSSLT  162 (229)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCT-TGGGCTTCSEEECCSSCCCCCCT--TTTTTCTTCC
T ss_pred             CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCc-ccccCCCCCEEECCCCcCCccCH--HHHhCCCCCC
Confidence            999999999999999666667889999999999999998 8887 78999999999999999998665  5566788888


Q ss_pred             ecccccccee
Q 038485          168 LYKLAGFFAI  177 (184)
Q Consensus       168 ~~~l~~~~~~  177 (184)
                      .+++.+|.+.
T Consensus       163 ~L~l~~N~~~  172 (229)
T 3e6j_A          163 HAYLFGNPWD  172 (229)
T ss_dssp             EEECTTSCBC
T ss_pred             EEEeeCCCcc
Confidence            8999998864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=1.6e-19  Score=133.18  Aligned_cols=150  Identities=24%  Similarity=0.287  Sum_probs=127.6

Q ss_pred             CCCCCCceeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCC
Q 038485           18 ATDCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL   88 (184)
Q Consensus        18 ~~~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l   88 (184)
                      +.+.|.|.++.|...         ..++++|++++|.+..   ++...|..+++|++|++++|.+....+..    +..+
T Consensus         3 ~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l   75 (208)
T 2o6s_A            3 SRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKS---LPNGVFDELTSLTQLYLGGNKLQSLPNGV----FNKL   75 (208)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTC
T ss_pred             CCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCc---CChhhhcccccCcEEECCCCccCccChhh----cCCC
Confidence            567789999999752         4579999999999987   78888899999999999999999776665    7889


Q ss_pred             CCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceee
Q 038485           89 NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANL  168 (184)
Q Consensus        89 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~  168 (184)
                      ++|++|++++|.++...+..+..+++|+.|++++|.++ .++...+..+++|++|++++|++++.++  ..+..+++|+.
T Consensus        76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~  152 (208)
T 2o6s_A           76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQY  152 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCE
T ss_pred             CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCH--HHhccCCCccE
Confidence            99999999999999665666889999999999999998 6665468899999999999999998665  44556778888


Q ss_pred             cccccccee
Q 038485          169 YKLAGFFAI  177 (184)
Q Consensus       169 ~~l~~~~~~  177 (184)
                      +++++|.+.
T Consensus       153 L~l~~N~~~  161 (208)
T 2o6s_A          153 IWLHDNPWD  161 (208)
T ss_dssp             EECCSCCBC
T ss_pred             EEecCCCee
Confidence            888888764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=1.6e-19  Score=134.56  Aligned_cols=150  Identities=24%  Similarity=0.354  Sum_probs=129.3

Q ss_pred             CCCCCCceeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCC
Q 038485           18 ATDCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL   88 (184)
Q Consensus        18 ~~~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l   88 (184)
                      ..+.|.|..+.|...         +..+++|++++|.+..   +++..|..+++|++|++++|.+.+..|..    |..+
T Consensus         7 ~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~---i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~----~~~l   79 (220)
T 2v9t_B            7 AACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKV---IPPGAFSPYKKLRRIDLSNNQISELAPDA----FQGL   79 (220)
T ss_dssp             TTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCE---ECTTSSTTCTTCCEEECCSSCCCEECTTT----TTTC
T ss_pred             CCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCC---cCHhHhhCCCCCCEEECCCCcCCCcCHHH----hhCC
Confidence            556788999999752         3578999999999997   88888899999999999999999887877    9999


Q ss_pred             CCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceee
Q 038485           89 NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANL  168 (184)
Q Consensus        89 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~  168 (184)
                      ++|++|++++|.++...+..|..+++|+.|++++|.++ .++...+..+++|+.|++++|++++.++  ..+..+++|..
T Consensus        80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~  156 (220)
T 2v9t_B           80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAK--GTFSPLRAIQT  156 (220)
T ss_dssp             SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCE
T ss_pred             cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC-EeCHHHcCCCCCCCEEECCCCcCCEECH--HHHhCCCCCCE
Confidence            99999999999999555566789999999999999998 5554489999999999999999998766  44567888888


Q ss_pred             cccccccee
Q 038485          169 YKLAGFFAI  177 (184)
Q Consensus       169 ~~l~~~~~~  177 (184)
                      +++++|.+.
T Consensus       157 L~L~~N~~~  165 (220)
T 2v9t_B          157 MHLAQNPFI  165 (220)
T ss_dssp             EECCSSCEE
T ss_pred             EEeCCCCcC
Confidence            899998874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=5.1e-19  Score=131.88  Aligned_cols=150  Identities=21%  Similarity=0.284  Sum_probs=128.7

Q ss_pred             CCCCCCceeEEecCC---------CCceEEEecCCCCCCccccc-cCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcC
Q 038485           18 ATDCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYL-NASLFTPFQQLESLDLTDNKIASCVENEGIERLSR   87 (184)
Q Consensus        18 ~~~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~-~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~   87 (184)
                      ..+.|.|..+.|...         ...+++|++++|.+..   + +...|..+++|++|++++|.+++..+..    |..
T Consensus         7 ~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~---~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~   79 (220)
T 2v70_A            7 EKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTV---LEATGIFKKLPQLRKINFSNNKITDIEEGA----FEG   79 (220)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE---ECCCCCGGGCTTCCEEECCSSCCCEECTTT----TTT
T ss_pred             CCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCc---cCchhhhccCCCCCEEECCCCcCCEECHHH----hCC
Confidence            556788999999652         3467899999999987   5 4456789999999999999999877766    899


Q ss_pred             CCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCcccccccccee
Q 038485           88 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNAN  167 (184)
Q Consensus        88 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~  167 (184)
                      +++|+.|++++|.+++..+..+..+++|+.|++++|.++ .++...+..+++|+.|++++|++++.+|  ..+..+++|.
T Consensus        80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~  156 (220)
T 2v70_A           80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAP--GAFDTLHSLS  156 (220)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC-CBCTTSSTTCTTCSEEECTTSCCCCBCT--TTTTTCTTCC
T ss_pred             CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC-eECHhHcCCCccCCEEECCCCcCCEECH--HHhcCCCCCC
Confidence            999999999999999777888999999999999999998 4544489999999999999999999766  4556788889


Q ss_pred             ecccccccee
Q 038485          168 LYKLAGFFAI  177 (184)
Q Consensus       168 ~~~l~~~~~~  177 (184)
                      .+++++|.+.
T Consensus       157 ~L~L~~N~l~  166 (220)
T 2v70_A          157 TLNLLANPFN  166 (220)
T ss_dssp             EEECCSCCEE
T ss_pred             EEEecCcCCc
Confidence            9999999875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.79  E-value=6.6e-19  Score=133.48  Aligned_cols=134  Identities=25%  Similarity=0.310  Sum_probs=77.5

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  113 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~  113 (184)
                      ..++.|++++|.+..   +++..|..+++|++|++++|.+.+..+..    +..+++|+.|++++|.++...+..+..++
T Consensus        35 ~~l~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  107 (251)
T 3m19_A           35 ADTEKLDLQSTGLAT---LSDATFRGLTKLTWLNLDYNQLQTLSAGV----FDDLTELGTLGLANNQLASLPLGVFDHLT  107 (251)
T ss_dssp             TTCCEEECTTSCCCC---CCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             CCCCEEEccCCCcCc---cCHhHhcCcccCCEEECCCCcCCccCHhH----hccCCcCCEEECCCCcccccChhHhcccC
Confidence            456677777777665   55555666666666666666666655544    55666666666666666644444555556


Q ss_pred             CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485          114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      +|+.|++++|.++ .++...+..+++|++|++++|++++.++  ..+..+++|+.+++++|.+.
T Consensus       108 ~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A          108 QLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPA--GAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCS
T ss_pred             CCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCH--HHcCcCcCCCEEECCCCcCC
Confidence            6666666666665 4444345555566666666666555433  22334445555555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.77  E-value=2.3e-18  Score=131.87  Aligned_cols=111  Identities=27%  Similarity=0.362  Sum_probs=62.0

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  113 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~  113 (184)
                      ..+++|++++|.+..   +++..|..+++|++|++++|.+....+..    |..+++|++|++++|.+....+..+..++
T Consensus        37 ~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~i~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  109 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSS---LPSKAFHRLTKLRLLYLNDNKLQTLPAGI----FKELKNLETLWVTDNKLQALPIGVFDQLV  109 (270)
T ss_dssp             TTCSEEECCSSCCSC---CCTTSSSSCTTCCEEECCSSCCSCCCTTT----TSSCTTCCEEECCSSCCCCCCTTTTTTCS
T ss_pred             CCCCEEECcCCCCCe---eCHHHhcCCCCCCEEECCCCccCeeChhh----hcCCCCCCEEECCCCcCCcCCHhHccccc
Confidence            357777787777775   55555666667777777766666544443    45555666666666655543334444555


Q ss_pred             CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCc
Q 038485          114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK  152 (184)
Q Consensus       114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~  152 (184)
                      +|+.|++++|.++ .++...+..+++|++|++++|.+.+
T Consensus       110 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~  147 (270)
T 2o6q_A          110 NLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQS  147 (270)
T ss_dssp             SCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCc
Confidence            5555555555554 3333234444444555554444444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.76  E-value=5.8e-19  Score=150.13  Aligned_cols=133  Identities=17%  Similarity=0.228  Sum_probs=107.3

Q ss_pred             CCCCCCCCCCCCc---eeEEecCCCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcC---------------
Q 038485           12 RKNGEGATDCCQW---ERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKI---------------   73 (184)
Q Consensus        12 ~~~~~~~~~~c~~---~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l---------------   73 (184)
                      ..|+. ++++|.|   .||.|.. .++++.|+|+++.+.+  .++ +.+..+++|++|++++|.+               
T Consensus        58 ~~W~~-~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g--~lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~  132 (636)
T 4eco_A           58 ANWNF-NKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASG--RVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISAN  132 (636)
T ss_dssp             CCCCC-SSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEE--EEC-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTT
T ss_pred             CCCCC-CCCcccccCCCCeEEcC-CCCEEEEEecCcccCC--cCC-hHHhcCccceEEECcCCccccCCccccccccccC
Confidence            46974 7899999   9999986 4799999999999976  344 5568899999999988844               


Q ss_pred             ---------------------------------------------------------------CCcchhhhhhhhcCCCC
Q 038485           74 ---------------------------------------------------------------ASCVENEGIERLSRLNN   90 (184)
Q Consensus        74 ---------------------------------------------------------------~~~~p~~~~~~~~~l~~   90 (184)
                                                                                     ++ .|..    ++.+++
T Consensus       133 ~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~----l~~l~~  207 (636)
T 4eco_A          133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA----VMRLTK  207 (636)
T ss_dssp             CCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGG----GGGCTT
T ss_pred             chHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHH----HhcccC
Confidence                                                                           22 3444    788888


Q ss_pred             CcEEECCCCCCCch-----------------hHHhhc--cCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCC-C
Q 038485           91 LKMLNLSGNSFNNS-----------------ILSSLT--HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK-I  150 (184)
Q Consensus        91 L~~L~l~~n~~~~~-----------------~p~~~~--~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~-l  150 (184)
                      |++|++++|.+++.                 +|..++  .+++|++|++++|.+.+.+|. .++.+++|++|++++|+ +
T Consensus       208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~l  286 (636)
T 4eco_A          208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGI  286 (636)
T ss_dssp             CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTTTCSSCCEEECTTCTTS
T ss_pred             CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-HHhcCCCCCEEECcCCCCC
Confidence            99999999998874                 788888  888899999988888878886 78888888888888887 7


Q ss_pred             Cc-ccc
Q 038485          151 DK-FVV  155 (184)
Q Consensus       151 ~~-~~~  155 (184)
                      ++ .+|
T Consensus       287 ~~~~lp  292 (636)
T 4eco_A          287 SGEQLK  292 (636)
T ss_dssp             CHHHHH
T ss_pred             ccccch
Confidence            76 444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.76  E-value=6.9e-19  Score=152.44  Aligned_cols=158  Identities=24%  Similarity=0.238  Sum_probs=97.1

Q ss_pred             ccCCCCCCCCCCCCceeEEecCCCCceEEEecCCCCCCccc-cccC----------------------ccCCCCCCCCEE
Q 038485           10 KDRKNGEGATDCCQWERVECSNTMSRVIALDLSDTYGGEYW-YLNA----------------------SLFTPFQQLESL   66 (184)
Q Consensus        10 ~~~~~~~~~~~~c~~~gv~c~~~~~~l~~L~l~~n~l~~~~-~~~~----------------------~~~~~l~~L~~L   66 (184)
                      .++.|+ .+.+||+|.||.|.  .++++.|+++++.+.+.. .+++                      ..+..+++|++|
T Consensus        29 ~l~~W~-~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L  105 (768)
T 3rgz_A           29 LLPDWS-SNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSL  105 (768)
T ss_dssp             SSTTCC-TTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEE
T ss_pred             cccCCC-CCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEE
Confidence            688997 47899999999998  579999999998876510 0111                      345677788888


Q ss_pred             eCCCCcCCCcchh--hhhhhhcCCCCCcEEECCCCCCCchhHHhh-ccCCCCcEEeCCCccccCcccHhh---h------
Q 038485           67 DLTDNKIASCVEN--EGIERLSRLNNLKMLNLSGNSFNNSILSSL-THLSSLRSLNLFWNRLEGSIDVKE---L------  134 (184)
Q Consensus        67 ~ls~n~l~~~~p~--~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~l~~n~~~~~l~~~~---~------  134 (184)
                      ++++|.+.+..|.  .    +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+. .   +      
T Consensus       106 ~Ls~n~l~~~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L  180 (768)
T 3rgz_A          106 DLSRNSLSGPVTTLTS----LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV-GWVLSDGCGEL  180 (768)
T ss_dssp             ECCSSEEEEEGGGGGG----GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHH-HHHHTTCCTTC
T ss_pred             ECCCCcCCCcCCChHH----HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCCh-hhhhhccCCCC
Confidence            8888887766665  4    5566666666666665554444332 3444555555555544422221 2   2      


Q ss_pred             ----------------cCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          135 ----------------DSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       135 ----------------~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                                      ..+++|++|++++|.+.+.+|.   +..+++|+.+++++|.+.+
T Consensus       181 ~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---l~~l~~L~~L~Ls~n~l~~  237 (768)
T 3rgz_A          181 KHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF---LGDCSALQHLDISGNKLSG  237 (768)
T ss_dssp             CEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB---CTTCCSCCEEECCSSCCCS
T ss_pred             CEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc---cccCCCCCEEECcCCcCCC
Confidence                            4455556666666665554443   3445566666666666553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.75  E-value=1.7e-17  Score=125.70  Aligned_cols=135  Identities=24%  Similarity=0.341  Sum_probs=118.8

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.+..   +++..|..+++|++|++++|.+....+..    +..+++|+.|++++|.++...+..+..+
T Consensus        58 l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l  130 (251)
T 3m19_A           58 LTKLTWLNLDYNQLQT---LSAGVFDDLTELGTLGLANNQLASLPLGV----FDHLTQLDKLYLGGNQLKSLPSGVFDRL  130 (251)
T ss_dssp             CTTCCEEECTTSCCCC---CCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cccCCEEECCCCcCCc---cCHhHhccCCcCCEEECCCCcccccChhH----hcccCCCCEEEcCCCcCCCcChhHhccC
Confidence            5789999999999997   78888899999999999999999877766    8899999999999999996666668899


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      ++|+.|++++|.++ .++...+..+++|++|++++|++++.++  ..+..+++|..+++++|.+.
T Consensus       131 ~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          131 TKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPH--GAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSCCBC
T ss_pred             CcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCccCH--HHHhCCCCCCEEEeeCCcee
Confidence            99999999999998 6666579999999999999999998766  44567888888899998875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=1.3e-17  Score=132.73  Aligned_cols=154  Identities=24%  Similarity=0.287  Sum_probs=127.1

Q ss_pred             CCCCCCceeEEecCC---------CCceEEEecCCCCCCccccccCccCC-CCCCCCEEeCCCCcCCCcchhhhhhhhcC
Q 038485           18 ATDCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFT-PFQQLESLDLTDNKIASCVENEGIERLSR   87 (184)
Q Consensus        18 ~~~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~-~l~~L~~L~ls~n~l~~~~p~~~~~~~~~   87 (184)
                      ..+.|.+..+.|...         +..++.|+|++|.+..   ++...|. .+++|++|++++|.+....+..    |..
T Consensus        14 ~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~---l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~   86 (361)
T 2xot_A           14 ANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSR---LRAEWTPTRLTNLHSLLLSHNHLNFISSEA----FVP   86 (361)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCE---ECTTSSSSCCTTCCEEECCSSCCCEECTTT----TTT
T ss_pred             CCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCc---cChhhhhhcccccCEEECCCCcCCccChhh----ccC
Confidence            667778888999652         3458899999999997   8888777 8999999999999999877776    899


Q ss_pred             CCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCcc-ccccccce
Q 038485           88 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKG-TTNTIKNA  166 (184)
Q Consensus        88 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~-~~~~l~~L  166 (184)
                      +++|++|++++|.+....+..|..+++|+.|++++|.++ .++...+..+++|++|++++|++++.++... .+..+.+|
T Consensus        87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L  165 (361)
T 2xot_A           87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL  165 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred             CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence            999999999999999766777899999999999999998 5554489999999999999999998655321 11457788


Q ss_pred             eeccccccceeeE
Q 038485          167 NLYKLAGFFAIWF  179 (184)
Q Consensus       167 ~~~~l~~~~~~~~  179 (184)
                      ..+++++|.+...
T Consensus       166 ~~L~L~~N~l~~l  178 (361)
T 2xot_A          166 MLLDLSSNKLKKL  178 (361)
T ss_dssp             CEEECCSSCCCCC
T ss_pred             CEEECCCCCCCcc
Confidence            8888888888643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.74  E-value=1.3e-17  Score=140.28  Aligned_cols=138  Identities=25%  Similarity=0.292  Sum_probs=120.1

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      +..+++|+|++|.++.   +++..|..+++|++|++++|.+++..+..    |..+++|++|++++|.++...+..|..+
T Consensus        51 p~~~~~LdLs~N~i~~---l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~----f~~L~~L~~L~Ls~N~l~~l~~~~f~~L  123 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGL  123 (635)
T ss_dssp             CTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred             CcCCCEEEeeCCCCCC---CCHHHHhCCCCCCEEECCCCcCCCcChhH----hcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence            4578999999999997   88889999999999999999999877776    8999999999999999996666789999


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF  179 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~  179 (184)
                      ++|++|++++|.++ .++...++.+++|++|++++|.+.+... ...+..+++|+.+++++|.+...
T Consensus       124 ~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          124 SSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKL-PEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             TTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCC-CGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCC-chhhccchhhhhhcccCcccccc
Confidence            99999999999998 6776579999999999999999986432 24455688888888999888654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.73  E-value=3.6e-17  Score=125.34  Aligned_cols=136  Identities=22%  Similarity=0.300  Sum_probs=104.4

Q ss_pred             CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc
Q 038485           32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH  111 (184)
Q Consensus        32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~  111 (184)
                      ...++++|++++|.+..   +++..|..+++|++|++++|.+.+..+..    +..+++|+.|++++|.+++..+..+..
T Consensus        83 ~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~  155 (272)
T 3rfs_A           83 ELTNLTYLILTGNQLQS---LPNGVFDKLTNLKELVLVENQLQSLPDGV----FDKLTNLTYLNLAHNQLQSLPKGVFDK  155 (272)
T ss_dssp             TCTTCCEEECTTSCCCC---CCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCCCEEECCCCccCc---cChhHhcCCcCCCEEECCCCcCCccCHHH----hccCCCCCEEECCCCccCccCHHHhcc
Confidence            45678888888888776   67777788888888888888888766665    678888888888888888655666778


Q ss_pred             CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485          112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       112 l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      +++|+.|++++|.++ .++...+..+++|++|++++|++.+.++  ..+..+++|+.+++++|.+.
T Consensus       156 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          156 LTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBC
T ss_pred             CccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcCCccCH--HHHhCCcCCCEEEccCCCcc
Confidence            888888888888887 5555457788888888888888887665  34456777777777777664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.73  E-value=3.5e-17  Score=117.68  Aligned_cols=130  Identities=24%  Similarity=0.322  Sum_probs=109.3

Q ss_pred             CCCCCCceeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCC
Q 038485           18 ATDCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL   88 (184)
Q Consensus        18 ~~~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l   88 (184)
                      +.+.|+|.++.|...         ...+++|++++|.+..   ++...|..+++|++|++++|.+++..+..    +..+
T Consensus         3 ~~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l   75 (177)
T 2o6r_A            3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS---LPHGVFDKLTQLTKLSLSQNQIQSLPDGV----FDKL   75 (177)
T ss_dssp             TTCEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTC
T ss_pred             CCCEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccE---eCHHHhcCcccccEEECCCCcceEeChhH----ccCC
Confidence            456788999999651         4578999999999986   77777888999999999999998776665    7889


Q ss_pred             CCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcccc
Q 038485           89 NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVV  155 (184)
Q Consensus        89 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~  155 (184)
                      ++|+.|++++|.+++..+..+..+++|+.+++++|.++ .++...+..+++|+++++++|++.+..+
T Consensus        76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99999999999998666666788999999999999998 6776467889999999999999987655

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.72  E-value=8.6e-17  Score=123.05  Aligned_cols=135  Identities=26%  Similarity=0.327  Sum_probs=78.4

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.+..   ++...|..+++|++|++++|.+....+..    +..+++|+.|++++|.+....+..+..+
T Consensus        60 l~~L~~L~l~~n~l~~---i~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l  132 (270)
T 2o6q_A           60 LTKLRLLYLNDNKLQT---LPAGIFKELKNLETLWVTDNKLQALPIGV----FDQLVNLAELRLDRNQLKSLPPRVFDSL  132 (270)
T ss_dssp             CTTCCEEECCSSCCSC---CCTTTTSSCTTCCEEECCSSCCCCCCTTT----TTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCCCEEECCCCccCe---eChhhhcCCCCCCEEECCCCcCCcCCHhH----cccccCCCEEECCCCccCeeCHHHhCcC
Confidence            4566777777777665   66666666666777777766666554443    5566666666666666664444555556


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      ++|++|++++|.++ .++...+..+++|+.|++++|.+.+.++  ..+..+++|+.+++++|.+.
T Consensus       133 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          133 TKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPE--GAFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCCS
T ss_pred             cCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeCh--hHhccCCCcCEEECCCCcCC
Confidence            66666666666665 4444345555666666666665555433  22334444555555555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=9.1e-18  Score=146.94  Aligned_cols=144  Identities=18%  Similarity=0.223  Sum_probs=110.4

Q ss_pred             eeEEecCCCCceEEEecCCCCCCccccccCccCCCCCCCCEEeC-CCCcCCCc---------------------------
Q 038485           25 ERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDL-TDNKIASC---------------------------   76 (184)
Q Consensus        25 ~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~l-s~n~l~~~---------------------------   76 (184)
                      .||.|.. .++++.|+|+++.+.+  .++ +.+..+++|++|++ ++|.+.+.                           
T Consensus       315 ~GV~C~~-~~~V~~L~Ls~~~L~G--~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~  390 (876)
T 4ecn_A          315 PGVDLDN-NGRVTGLSLAGFGAKG--RVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKM  390 (876)
T ss_dssp             TTEEECT-TSCEEEEECTTTCCEE--EEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHH
T ss_pred             CceEecC-CCCEEEEECccCCCCC--cCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhh
Confidence            9999986 5799999999999986  344 55689999999999 77754333                           


Q ss_pred             -------------------------------------------------chhhhhhhhcCCCCCcEEECCCCCCCc----
Q 038485           77 -------------------------------------------------VENEGIERLSRLNNLKMLNLSGNSFNN----  103 (184)
Q Consensus        77 -------------------------------------------------~p~~~~~~~~~l~~L~~L~l~~n~~~~----  103 (184)
                                                                       .|..    +..+++|+.|++++|.+++    
T Consensus       391 ~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~----l~~L~~L~~L~Ls~N~Lsg~~i~  466 (876)
T 4ecn_A          391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA----IQRLTKLQIIYFANSPFTYDNIA  466 (876)
T ss_dssp             HTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG----GGGCTTCCEEEEESCCCCGGGBS
T ss_pred             hhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHH----HhcCCCCCEEECcCCcCCCCccc
Confidence                                                             3444    7888999999999999987    


Q ss_pred             -------------hhHHhhc--cCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCC-CCc-cccC-cc----ccc
Q 038485          104 -------------SILSSLT--HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK-IDK-FVVS-KG----TTN  161 (184)
Q Consensus       104 -------------~~p~~~~--~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~-l~~-~~~~-~~----~~~  161 (184)
                                   .+|..++  .+++|+.|++++|.+.+.+|. .+..+++|+.|++++|+ +++ .+|. ..    .+.
T Consensus       467 ~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~  545 (876)
T 4ecn_A          467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDED  545 (876)
T ss_dssp             SSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTT
T ss_pred             ccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccchHHHHhhhhccc
Confidence                         3788877  889999999999988878886 78889999999999997 877 4442 11    122


Q ss_pred             cccceeecccccccee
Q 038485          162 TIKNANLYKLAGFFAI  177 (184)
Q Consensus       162 ~l~~L~~~~l~~~~~~  177 (184)
                      .+.+|+.+++++|.+.
T Consensus       546 ~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          546 TGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TTTTCCEEECCSSCCC
T ss_pred             ccCCccEEEeeCCcCC
Confidence            3346666666666665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.71  E-value=1.2e-16  Score=123.00  Aligned_cols=111  Identities=21%  Similarity=0.207  Sum_probs=53.5

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCC-CCchhHHhhccC
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNS-FNNSILSSLTHL  112 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~l  112 (184)
                      ..+++|++++|.+..   +++..|..+++|++|++++|.+.+..+..    +..+++|++|++++|. +....|..+..+
T Consensus        32 ~~l~~L~l~~n~i~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~~l~~~~~~~~~~l  104 (285)
T 1ozn_A           32 AASQRIFLHGNRISH---VPAASFRACRNLTILWLHSNVLARIDAAA----FTGLALLEQLDLSDNAQLRSVDPATFHGL  104 (285)
T ss_dssp             TTCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred             CCceEEEeeCCcCCc---cCHHHcccCCCCCEEECCCCccceeCHhh----cCCccCCCEEeCCCCCCccccCHHHhcCC
Confidence            355666666666554   44444555555555555555555444433    4445555555555554 443334444444


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCc
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK  152 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~  152 (184)
                      ++|+.|++++|.++ .++...+..+++|++|++++|++.+
T Consensus       105 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~  143 (285)
T 1ozn_A          105 GRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA  143 (285)
T ss_dssp             TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             cCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccc
Confidence            44444444444444 2222234444444444444444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=8e-17  Score=117.50  Aligned_cols=130  Identities=22%  Similarity=0.337  Sum_probs=108.5

Q ss_pred             CCCCCCceeEEecCC---------CCceEEEecCCCCCCccccccCc-cCCCCCCCCEEeCCCCcCCCcchhhhhhhhcC
Q 038485           18 ATDCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYLNAS-LFTPFQQLESLDLTDNKIASCVENEGIERLSR   87 (184)
Q Consensus        18 ~~~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~-~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~   87 (184)
                      ..+.|.|..+.|...         ...+++|++++|.+..   +++. .|..+++|++|++++|.+++..|..    |..
T Consensus         4 ~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~   76 (192)
T 1w8a_A            4 AMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGR---ISSDGLFGRLPHLVKLELKRNQLTGIEPNA----FEG   76 (192)
T ss_dssp             TTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCS---BCCSCSGGGCTTCCEEECCSSCCCCBCTTT----TTT
T ss_pred             CCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCc---cCCccccccCCCCCEEECCCCCCCCcCHhH----cCC
Confidence            456678888888652         3478999999999986   6553 5788999999999999999887777    889


Q ss_pred             CCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcccc
Q 038485           88 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVV  155 (184)
Q Consensus        88 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~  155 (184)
                      +++|+.|++++|.+++..+..+..+++|++|++++|.+++..|. .+..+++|++|++++|++.+..+
T Consensus        77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCccCcCc
Confidence            99999999999999977777788999999999999999854454 78899999999999999886543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.70  E-value=1.4e-16  Score=134.01  Aligned_cols=137  Identities=23%  Similarity=0.244  Sum_probs=116.0

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      +.++++|++++|.+..   +++..|..+++|++|++++|.+.+..|..    |..+++|++|++++|.+.+..|..++.+
T Consensus        31 ~~~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~----~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  103 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKI---LKSYSFSNFSELQWLDLSRCEIETIEDKA----WHGLHHLSNLILTGNPIQSFSPGSFSGL  103 (606)
T ss_dssp             CTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred             CCCcCEEECCCCCcCE---eChhhccCCccCcEEeCCCCcccccCHHH----hhchhhcCEeECCCCcccccChhhcCCc
Confidence            4678999999999987   77878899999999999999999877776    8899999999999999997778889999


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcc-ccCccccccccceeeccccccceeeE
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF-VVSKGTTNTIKNANLYKLAGFFAIWF  179 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~-~~~~~~~~~l~~L~~~~l~~~~~~~~  179 (184)
                      ++|++|++++|.++ .++...++.+++|++|++++|.+.+. +|  ..+..+++|+.+++++|.+...
T Consensus       104 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp--~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A          104 TSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLP--AYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             TTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCC--GGGGTCTTCCEEECCSSCCCEE
T ss_pred             ccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccceech--HhHhhcCCCCEEEccCCcceec
Confidence            99999999999998 55533788999999999999998862 34  3455778888888888887654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.70  E-value=5.6e-17  Score=125.91  Aligned_cols=149  Identities=23%  Similarity=0.267  Sum_probs=106.6

Q ss_pred             CCCCCCceeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcc--hhhhhhhhc
Q 038485           18 ATDCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCV--ENEGIERLS   86 (184)
Q Consensus        18 ~~~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~--p~~~~~~~~   86 (184)
                      +.+.|.|.++.|...         +.++++|++++|.+..   ++...|..+++|++|++++|.+....  +..    +.
T Consensus         3 ~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~---i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~   75 (306)
T 2z66_A            3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS---LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS----DF   75 (306)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCEEEEEEHH----HH
T ss_pred             CCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCc---cCHhHhhccccCCEEECCCCccCcccCcccc----cc
Confidence            456789999999762         4579999999999997   88888899999999999999987442  344    56


Q ss_pred             CCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccH-hhhcCCCCCcEEECCCCCCCccccCccccccccc
Q 038485           87 RLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKN  165 (184)
Q Consensus        87 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~  165 (184)
                      .+++|++|++++|.+. .+|..+..+++|++|++++|.++ .++. ..+..+++|++|++++|.+.+.++  ..+..+++
T Consensus        76 ~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~  151 (306)
T 2z66_A           76 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSS  151 (306)
T ss_dssp             SCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECST--TTTTTCTT
T ss_pred             cccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccch--hhcccCcC
Confidence            7788888888888776 45656677777777777777776 3332 356666777777777777665444  23334555


Q ss_pred             eeecccccccee
Q 038485          166 ANLYKLAGFFAI  177 (184)
Q Consensus       166 L~~~~l~~~~~~  177 (184)
                      |+.+++++|.+.
T Consensus       152 L~~L~l~~n~l~  163 (306)
T 2z66_A          152 LEVLKMAGNSFQ  163 (306)
T ss_dssp             CCEEECTTCEEG
T ss_pred             CCEEECCCCccc
Confidence            555555555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.69  E-value=2.2e-16  Score=120.97  Aligned_cols=135  Identities=26%  Similarity=0.295  Sum_probs=88.6

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  113 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~  113 (184)
                      ..+++|++++|.+..   ++...|..+++|++|++++|.+....+..    +..+++|++|++++|.+.+..+..+..++
T Consensus        28 ~~l~~L~ls~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (276)
T 2z62_A           28 FSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGLS  100 (276)
T ss_dssp             TTCCEEECTTCCCCE---ECTTTTTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred             CCccEEECCCCcccc---cCHhHhccccCCcEEECCCCcCCccCHHH----ccCCcCCCEEECCCCccCccChhhhcCCc
Confidence            457777777777775   55556677777777777777776655544    66777777777777777755556666777


Q ss_pred             CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccc-cCccccccccceeeccccccceee
Q 038485          114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFV-VSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~-~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      +|+.|++++|.+. .++...+..+++|++|++++|.+.+.. |  ..+..+++|+.+++++|.+..
T Consensus       101 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~--~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A          101 SLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP--EYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             TCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCC--GGGGGCTTCCEEECCSSCCCE
T ss_pred             cccEEECCCCCcc-ccCchhcccCCCCCEEECcCCccceecCc--hhhccCCCCCEEECCCCCCCc
Confidence            7777777777776 343334666677777777777766532 2  234455666666666666554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.69  E-value=1.3e-16  Score=129.88  Aligned_cols=154  Identities=23%  Similarity=0.249  Sum_probs=121.1

Q ss_pred             CCCCCCcee--EEecCC--------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcc-hhhhhhhhc
Q 038485           18 ATDCCQWER--VECSNT--------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCV-ENEGIERLS   86 (184)
Q Consensus        18 ~~~~c~~~g--v~c~~~--------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~~~~   86 (184)
                      +...|.|.+  +.|...        +.++++|++++|.+..   +.+..|..+++|++|++++|.+.+.. +..    |.
T Consensus         4 ~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~----~~   76 (455)
T 3v47_A            4 GTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAE---LNETSFSRLQDLQFLKVEQQTPGLVIRNNT----FR   76 (455)
T ss_dssp             ---CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCE---ECTTTTSSCTTCCEEECCCCSTTCEECTTT----TT
T ss_pred             ccceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCc---CChhHhccCccccEEECcCCcccceECccc----cc
Confidence            344555555  778652        3679999999999987   77777899999999999999887554 344    88


Q ss_pred             CCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccH-hhhcCCCCCcEEECCCCCCCccccCccccccccc
Q 038485           87 RLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKN  165 (184)
Q Consensus        87 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~  165 (184)
                      .+++|++|++++|.+.+..|..++.+++|++|++++|.+++..+. ..+..+++|++|++++|.+.+..|. ..+..+++
T Consensus        77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~  155 (455)
T 3v47_A           77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA-SFFLNMRR  155 (455)
T ss_dssp             TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC-GGGGGCTT
T ss_pred             ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc-cccCCCCc
Confidence            899999999999999977788899999999999999999854443 1288899999999999999886553 22556788


Q ss_pred             eeeccccccceeeE
Q 038485          166 ANLYKLAGFFAIWF  179 (184)
Q Consensus       166 L~~~~l~~~~~~~~  179 (184)
                      |+.+++++|.+.+.
T Consensus       156 L~~L~L~~n~l~~~  169 (455)
T 3v47_A          156 FHVLDLTFNKVKSI  169 (455)
T ss_dssp             CCEEECTTCCBSCC
T ss_pred             ccEEeCCCCccccc
Confidence            88888888887654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.69  E-value=8e-17  Score=139.56  Aligned_cols=91  Identities=25%  Similarity=0.243  Sum_probs=75.5

Q ss_pred             CCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCcccccccccee
Q 038485           88 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNAN  167 (184)
Q Consensus        88 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~  167 (184)
                      ++.|+.+++++|.+++.+|..++.++.|+.|++++|.++|.+|. .++.+++|+.|++++|+++|.+|  ..+..++.|+
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~L~~L~~LdLs~N~l~g~ip--~~l~~l~~L~  707 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLNILDLSSNKLDGRIP--QAMSALTMLT  707 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCEECCC--GGGGGCCCCS
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh-HHhCCCCCCEEECCCCcccCcCC--hHHhCCCCCC
Confidence            46677888888888888888888888888888888888888887 78888888888888888888877  5556788888


Q ss_pred             eccccccceeeEEE
Q 038485          168 LYKLAGFFAIWFII  181 (184)
Q Consensus       168 ~~~l~~~~~~~~~~  181 (184)
                      .++++.|.+++.++
T Consensus       708 ~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          708 EIDLSNNNLSGPIP  721 (768)
T ss_dssp             EEECCSSEEEEECC
T ss_pred             EEECcCCcccccCC
Confidence            88888888887664

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.69  E-value=6e-18  Score=133.18  Aligned_cols=109  Identities=13%  Similarity=0.147  Sum_probs=70.6

Q ss_pred             CCCC---CCCCCCCCceeEEecC--------CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhh
Q 038485           12 RKNG---EGATDCCQWERVECSN--------TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENE   80 (184)
Q Consensus        12 ~~~~---~~~~~~c~~~gv~c~~--------~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~   80 (184)
                      +.|.   ..+.++|.|.|+.|..        ...++++|++++|.+..   ++... ..+++|++|++++|.+. ..|..
T Consensus        48 ~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~---lp~~l-~~l~~L~~L~L~~n~l~-~lp~~  122 (328)
T 4fcg_A           48 SAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ---FPDQA-FRLSHLQHMTIDAAGLM-ELPDT  122 (328)
T ss_dssp             HHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSS---CCSCG-GGGTTCSEEEEESSCCC-CCCSC
T ss_pred             hhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchh---cChhh-hhCCCCCEEECCCCCcc-chhHH
Confidence            4563   3478999999999952        34678888888888875   55543 44677777777777766 44544


Q ss_pred             hhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCccc
Q 038485           81 GIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSID  130 (184)
Q Consensus        81 ~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~  130 (184)
                          +..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|
T Consensus       123 ----~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p  167 (328)
T 4fcg_A          123 ----MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP  167 (328)
T ss_dssp             ----GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCC
T ss_pred             ----HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccC
Confidence                566666666666666666 555556555666666665554443443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.69  E-value=3.1e-17  Score=131.46  Aligned_cols=134  Identities=17%  Similarity=0.185  Sum_probs=84.9

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  113 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~  113 (184)
                      .+++.|+++++.+..   ++...|..+++|++|++++|.+....+..    +..+++|++|++++|.+.+..|..++.++
T Consensus        45 ~~l~~l~l~~~~l~~---l~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  117 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRK---LPAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQNVP  117 (390)
T ss_dssp             CCCSEEEEESCEESE---ECTHHHHHCCCCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCceEEEecCCchhh---CChhHhcccccCcEEECCCCcccccChhh----ccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence            456667777776665   66655666677777777777766555544    66677777777777776655555666667


Q ss_pred             CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485          114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      +|++|++++|.++ .+|...+..+++|++|++++|.+.+.++  ..+..+++|+.+++++|.+.
T Consensus       118 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          118 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIED--DTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCT--TTTSSCTTCCEEECCSSCCS
T ss_pred             CCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccCh--hhccCCCCCCEEECCCCcCC
Confidence            7777777777766 5555345666677777777777666544  22334555555555555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.69  E-value=2e-16  Score=121.23  Aligned_cols=136  Identities=24%  Similarity=0.270  Sum_probs=116.2

Q ss_pred             CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc
Q 038485           32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH  111 (184)
Q Consensus        32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~  111 (184)
                      ...++++|++++|.+..   ++  .+..+++|++|++++|.+.+..+..    +..+++|++|++++|.+++..+..+..
T Consensus        61 ~l~~L~~L~l~~n~l~~---~~--~l~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~  131 (272)
T 3rfs_A           61 YLPNVRYLALGGNKLHD---IS--ALKELTNLTYLILTGNQLQSLPNGV----FDKLTNLKELVLVENQLQSLPDGVFDK  131 (272)
T ss_dssp             GCTTCCEEECTTSCCCC---CG--GGTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             cCCCCcEEECCCCCCCC---ch--hhcCCCCCCEEECCCCccCccChhH----hcCCcCCCEEECCCCcCCccCHHHhcc
Confidence            36789999999999886   43  4688999999999999999877766    789999999999999999766777899


Q ss_pred             CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485          112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF  179 (184)
Q Consensus       112 l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~  179 (184)
                      +++|+.|++++|.++ .++...+..+++|+.|++++|++++.++  ..+..+++|+.+++++|.+.+.
T Consensus       132 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          132 LTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPE--GVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCH--HHhcCCccCCEEECCCCcCCcc
Confidence            999999999999998 6665468899999999999999998665  3455678888889999988754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.69  E-value=4.1e-16  Score=119.96  Aligned_cols=113  Identities=26%  Similarity=0.307  Sum_probs=58.2

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCc-CCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNK-IASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH  111 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~  111 (184)
                      ..++++|++++|.+..   +.+..|..+++|++|++++|. +....+..    +..+++|++|++++|.+.+..|..+..
T Consensus        55 ~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~  127 (285)
T 1ozn_A           55 CRNLTILWLHSNVLAR---IDAAAFTGLALLEQLDLSDNAQLRSVDPAT----FHGLGRLHTLHLDRCGLQELGPGLFRG  127 (285)
T ss_dssp             CTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSCTTCCCCCTTT----TTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             CCCCCEEECCCCccce---eCHhhcCCccCCCEEeCCCCCCccccCHHH----hcCCcCCCEEECCCCcCCEECHhHhhC
Confidence            3456666666665554   444445555555555555554 44433433    455555555555555555444444555


Q ss_pred             CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcc
Q 038485          112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF  153 (184)
Q Consensus       112 l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~  153 (184)
                      +++|+.|++++|.++ .++...+..+++|++|++++|.+++.
T Consensus       128 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A          128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCccccc
Confidence            555555555555554 33332344555555555555555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.68  E-value=2e-16  Score=125.22  Aligned_cols=151  Identities=25%  Similarity=0.263  Sum_probs=123.1

Q ss_pred             CCCCCCceeEEecC-----------CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhc
Q 038485           18 ATDCCQWERVECSN-----------TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLS   86 (184)
Q Consensus        18 ~~~~c~~~gv~c~~-----------~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~   86 (184)
                      ....|.|.++ |.-           ...++++|++++|.+..   ++...|..+++|++|++++|.+.+..+..    +.
T Consensus        26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~   97 (353)
T 2z80_A           26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITY---ISNSDLQRCVNLQALVLTSNGINTIEEDS----FS   97 (353)
T ss_dssp             -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTT----TT
T ss_pred             cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcc---cCHHHhccCCCCCEEECCCCccCccCHhh----cC
Confidence            6678889887 431           13579999999999997   77778899999999999999999877776    88


Q ss_pred             CCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccH-hhhcCCCCCcEEECCCCC-CCccccCcccccccc
Q 038485           87 RLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNK-IDKFVVSKGTTNTIK  164 (184)
Q Consensus        87 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~-l~~~~~~~~~~~~l~  164 (184)
                      .+++|++|++++|.++...+..+..+++|++|++++|.++ .++. ..+..+++|++|++++|+ +.+.++  ..+..++
T Consensus        98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~l~  174 (353)
T 2z80_A           98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQR--KDFAGLT  174 (353)
T ss_dssp             TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECT--TTTTTCC
T ss_pred             CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCH--HHccCCC
Confidence            9999999999999999665666899999999999999998 6664 468889999999999984 665544  3445677


Q ss_pred             ceeeccccccceeeE
Q 038485          165 NANLYKLAGFFAIWF  179 (184)
Q Consensus       165 ~L~~~~l~~~~~~~~  179 (184)
                      +|+.+++++|.+...
T Consensus       175 ~L~~L~l~~n~l~~~  189 (353)
T 2z80_A          175 FLEELEIDASDLQSY  189 (353)
T ss_dssp             EEEEEEEEETTCCEE
T ss_pred             CCCEEECCCCCcCcc
Confidence            888888888877654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.68  E-value=1.9e-16  Score=131.79  Aligned_cols=149  Identities=21%  Similarity=0.236  Sum_probs=121.8

Q ss_pred             CCCceeEEecC-----------CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCC
Q 038485           21 CCQWERVECSN-----------TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLN   89 (184)
Q Consensus        21 ~c~~~gv~c~~-----------~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~   89 (184)
                      .|.|.++ |..           ....+++|++++|.+..   +++..|..+++|++|++++|.+.+..|..    |..++
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~   74 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITY---IGHGDLRACANLQVLILKSSRINTIEGDA----FYSLG   74 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCE---ECSSTTSSCTTCCEEECTTSCCCEECTTT----TTTCT
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCc---cChhhhhcCCcccEEECCCCCcCccChhh----ccccc
Confidence            4777777 542           13579999999999987   77777899999999999999999877776    89999


Q ss_pred             CCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccC-cccHhhhcCCCCCcEEECCCCCCCccccCccccccccceee
Q 038485           90 NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEG-SIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANL  168 (184)
Q Consensus        90 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~  168 (184)
                      +|++|++++|.+.+..|..++.+++|++|++++|.+++ ..+. .+..+++|++|++++|.+.+.++. ..+..+++|+.
T Consensus        75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~  152 (549)
T 2z81_A           75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRR-IDFAGLTSLNE  152 (549)
T ss_dssp             TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEE
T ss_pred             cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCH-hhhhcccccCe
Confidence            99999999999997778889999999999999999974 2343 688999999999999984443332 34556888888


Q ss_pred             ccccccceeeE
Q 038485          169 YKLAGFFAIWF  179 (184)
Q Consensus       169 ~~l~~~~~~~~  179 (184)
                      +++++|.+.+.
T Consensus       153 L~L~~n~l~~~  163 (549)
T 2z81_A          153 LEIKALSLRNY  163 (549)
T ss_dssp             EEEEETTCCEE
T ss_pred             eeccCCccccc
Confidence            88888887654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=3.7e-16  Score=113.96  Aligned_cols=129  Identities=20%  Similarity=0.208  Sum_probs=110.6

Q ss_pred             EEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchh-hhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCC
Q 038485           37 IALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVEN-EGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL  115 (184)
Q Consensus        37 ~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L  115 (184)
                      +.++++++.+..   ++...+   .++++|++++|.+.+..+. .    +..+++|+.|++++|.+++..|..+..+++|
T Consensus        11 ~~l~~s~~~l~~---ip~~~~---~~l~~L~l~~n~i~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   80 (192)
T 1w8a_A           11 TTVDCTGRGLKE---IPRDIP---LHTTELLLNDNELGRISSDGL----FGRLPHLVKLELKRNQLTGIEPNAFEGASHI   80 (192)
T ss_dssp             TEEECTTSCCSS---CCSCCC---TTCSEEECCSCCCCSBCCSCS----GGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CEEEcCCCCcCc---CccCCC---CCCCEEECCCCcCCccCCccc----cccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence            689999999987   776543   3899999999999887664 3    7889999999999999998879999999999


Q ss_pred             cEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          116 RSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       116 ~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      +.|++++|.++ .++...+..+++|++|++++|++++.+|  ..+..+++|+.+++++|.+..
T Consensus        81 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           81 QELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMP--GSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CEEECCSCCCC-EECSSSSTTCTTCCEEECCSSCCCEECT--TSSTTCTTCCEEECTTCCBCC
T ss_pred             CEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCH--HHhhcCCCCCEEEeCCCCccC
Confidence            99999999998 5555468999999999999999999776  445678888899999998753

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.67  E-value=9.8e-17  Score=135.40  Aligned_cols=160  Identities=17%  Similarity=0.199  Sum_probs=84.0

Q ss_pred             CccccCCCCCCCCCCCC----ceeEEecC----------------CCCceEEEecCCCCCCccccccCccCCCCCCCCEE
Q 038485            7 VGYKDRKNGEGATDCCQ----WERVECSN----------------TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESL   66 (184)
Q Consensus         7 ~~~~~~~~~~~~~~~c~----~~gv~c~~----------------~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L   66 (184)
                      ..+.++.|.. +..||.    |.++.|..                ....++.++++++.+..   +++..|..+++|++|
T Consensus         5 ~~~~l~~~~~-~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~---lp~~~~~~l~~L~~L   80 (597)
T 3oja_B            5 QRYNVKPRQP-EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK---LPAALLDSFRQVELL   80 (597)
T ss_dssp             ------CCCS-EECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESE---ECTHHHHHCCCCSEE
T ss_pred             ccccccCCCC-CCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCC---cCHHHHccCCCCcEE
Confidence            3456788964 444443    66655431                02344556666665554   555555556666666


Q ss_pred             eCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECC
Q 038485           67 DLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIG  146 (184)
Q Consensus        67 ~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls  146 (184)
                      ++++|.+.+..+..    |..+++|+.|++++|.+.+..|..++.+++|++|++++|.++ .+|...+..+++|++|+++
T Consensus        81 ~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls  155 (597)
T 3oja_B           81 NLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMS  155 (597)
T ss_dssp             ECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             ECCCCCCCCCChHH----hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEee
Confidence            66666665554444    556666666666666665544555556666666666666665 4444334556666666666


Q ss_pred             CCCCCccccCccccccccceeecccccccee
Q 038485          147 GNKIDKFVVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       147 ~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      +|.+.+.+|  ..+..+++|..+++++|.+.
T Consensus       156 ~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          156 NNNLERIED--DTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             SSCCCBCCT--TTTTTCTTCCEEECTTSCCS
T ss_pred             CCcCCCCCh--hhhhcCCcCcEEECcCCCCC
Confidence            666655444  22234444455555555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.66  E-value=6.2e-16  Score=125.90  Aligned_cols=136  Identities=26%  Similarity=0.246  Sum_probs=117.6

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  113 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~  113 (184)
                      ..++.|++++|.+..   ..+..+..+++|++|++++|.+.+..+..    +..+++|+.|++++|.+.+..|..+..++
T Consensus       275 ~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  347 (455)
T 3v47_A          275 SGVKTCDLSKSKIFA---LLKSVFSHFTDLEQLTLAQNEINKIDDNA----FWGLTHLLKLNLSQNFLGSIDSRMFENLD  347 (455)
T ss_dssp             SCCCEEECCSSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred             cCceEEEecCccccc---cchhhcccCCCCCEEECCCCcccccChhH----hcCcccCCEEECCCCccCCcChhHhcCcc
Confidence            578899999999886   77777899999999999999999877776    88999999999999999977788899999


Q ss_pred             CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485          114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF  179 (184)
Q Consensus       114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~  179 (184)
                      +|+.|++++|.+++..+. .+..+++|++|++++|++++.++  ..+..+++|+.+++++|.++..
T Consensus       348 ~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          348 KLEVLDLSYNHIRALGDQ-SFLGLPNLKELALDTNQLKSVPD--GIFDRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             TCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCCC
T ss_pred             cCCEEECCCCcccccChh-hccccccccEEECCCCccccCCH--hHhccCCcccEEEccCCCcccC
Confidence            999999999999844454 79999999999999999998665  3455788888999999988653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=4.7e-16  Score=113.59  Aligned_cols=126  Identities=25%  Similarity=0.310  Sum_probs=82.0

Q ss_pred             CCCCCCceeEEecC---------CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCC
Q 038485           18 ATDCCQWERVECSN---------TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL   88 (184)
Q Consensus        18 ~~~~c~~~gv~c~~---------~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l   88 (184)
                      ..+.|.+..+.|..         ....+++|++++|.+..   ++ ..|..+++|++|++++|.++...+..    |..+
T Consensus         6 ~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~---ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~----f~~l   77 (193)
T 2wfh_A            6 TECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTL---VP-KELSNYKHLTLIDLSNNRISTLSNQS----FSNM   77 (193)
T ss_dssp             TTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCS---CC-GGGGGCTTCCEEECCSSCCCCCCTTT----TTTC
T ss_pred             CCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCch---hH-HHhhcccCCCEEECCCCcCCEeCHhH----ccCC
Confidence            34555666666653         13456677777777664   44 44566777777777777777665555    6677


Q ss_pred             CCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCc
Q 038485           89 NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK  152 (184)
Q Consensus        89 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~  152 (184)
                      ++|+.|++++|.++...+..|..+++|+.|++++|.++ .++...+..+++|+.+++++|++..
T Consensus        78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeec
Confidence            77777777777777555566667777777777777776 5555456667777777777776643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.66  E-value=7.5e-16  Score=119.23  Aligned_cols=132  Identities=24%  Similarity=0.278  Sum_probs=87.9

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  113 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~  113 (184)
                      .+++.|++++|.+..   ++..  ..+++|++|++++|.+.. .|..    +..+++|+.|++++|.++...+..|..++
T Consensus        55 ~~L~~L~L~~n~l~~---~~~~--~~l~~L~~L~Ls~N~l~~-l~~~----~~~l~~L~~L~l~~N~l~~l~~~~~~~l~  124 (290)
T 1p9a_G           55 TRLTQLNLDRAELTK---LQVD--GTLPVLGTLDLSHNQLQS-LPLL----GQTLPALTVLDVSFNRLTSLPLGALRGLG  124 (290)
T ss_dssp             TTCCEEECTTSCCCE---EECC--SCCTTCCEEECCSSCCSS-CCCC----TTTCTTCCEEECCSSCCCCCCSSTTTTCT
T ss_pred             CCCCEEECCCCccCc---ccCC--CCCCcCCEEECCCCcCCc-Cchh----hccCCCCCEEECCCCcCcccCHHHHcCCC
Confidence            344444444444443   2221  445566666666666653 3333    66777888888888888755556677788


Q ss_pred             CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      +|+.|++++|.++ .++...+..+++|+.|++++|++++.++  ..+..+++|+.+++++|.+..
T Consensus       125 ~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~--~~~~~l~~L~~L~L~~N~l~~  186 (290)
T 1p9a_G          125 ELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPA--GLLNGLENLDTLLLQENSLYT  186 (290)
T ss_dssp             TCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCT--TTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCEEECCCCCCC-ccChhhcccccCCCEEECCCCcCCccCH--HHhcCcCCCCEEECCCCcCCc
Confidence            8888888888887 5665467778888888888888876554  445567777888888887763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.65  E-value=1.6e-15  Score=118.84  Aligned_cols=149  Identities=20%  Similarity=0.314  Sum_probs=110.9

Q ss_pred             CCCCCCceeEEecC---------CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCC
Q 038485           18 ATDCCQWERVECSN---------TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL   88 (184)
Q Consensus        18 ~~~~c~~~gv~c~~---------~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l   88 (184)
                      ..+.|.+..+.|..         ....++.|++++|.+..   +++..|..+++|++|++++|.+.+..|..    +..+
T Consensus        27 ~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l   99 (330)
T 1xku_A           27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE---IKDGDFKNLKNLHTLILINNKISKISPGA----FAPL   99 (330)
T ss_dssp             TTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC---BCTTTTTTCTTCCEEECCSSCCCCBCTTT----TTTC
T ss_pred             CCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCE---eChhhhccCCCCCEEECCCCcCCeeCHHH----hcCC
Confidence            44567899999864         24578999999999997   77777899999999999999999887777    8899


Q ss_pred             CCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceee
Q 038485           89 NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANL  168 (184)
Q Consensus        89 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~  168 (184)
                      ++|++|++++|.+. .+|..+.  ++|+.|++++|.++ .++...+..+++|+.|++++|.+.........+..+++|+.
T Consensus       100 ~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~  175 (330)
T 1xku_A          100 VKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY  175 (330)
T ss_dssp             TTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred             CCCCEEECCCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence            99999999999887 4554433  67888888888877 55554677777888888887777542222234445555555


Q ss_pred             cccccccee
Q 038485          169 YKLAGFFAI  177 (184)
Q Consensus       169 ~~l~~~~~~  177 (184)
                      +++++|.+.
T Consensus       176 L~l~~n~l~  184 (330)
T 1xku_A          176 IRIADTNIT  184 (330)
T ss_dssp             EECCSSCCC
T ss_pred             EECCCCccc
Confidence            555555543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.65  E-value=8.7e-16  Score=129.26  Aligned_cols=146  Identities=21%  Similarity=0.246  Sum_probs=120.6

Q ss_pred             ceeEEecC---------CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEE
Q 038485           24 WERVECSN---------TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKML   94 (184)
Q Consensus        24 ~~gv~c~~---------~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L   94 (184)
                      ...+.|..         .+..+++|++++|.+..   +++..|..+++|++|++++|.+.+..|..    |..+++|++|
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L   86 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPT---IQNTTFSRLINLTFLDLTRCQIYWIHEDT----FQSQHRLDTL   86 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSE---ECTTTSTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEE
T ss_pred             CceEECCCCCcccCcCCCCCcCcEEEccCCccCc---CChhHhccCccceEEECCCCccceeChhh----ccCccccCee
Confidence            44577754         24678999999999997   77888899999999999999999887877    8999999999


Q ss_pred             ECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccc
Q 038485           95 NLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGF  174 (184)
Q Consensus        95 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~  174 (184)
                      ++++|.+.+..|..++.+++|++|++++|.++ .++...+..+++|++|++++|.+.+.....  +..+++|+.+++++|
T Consensus        87 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n  163 (606)
T 3t6q_A           87 VLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPK--GFPTEKLKVLDFQNN  163 (606)
T ss_dssp             ECTTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCT--TCCCTTCCEEECCSS
T ss_pred             eCCCCcccccChhhhcccccccEeeccccCcc-cCCcchhccCCcccEEECCCCcccccCccc--ccCCcccCEEEcccC
Confidence            99999999777889999999999999999998 554347889999999999999998753221  123777777788888


Q ss_pred             ceeeE
Q 038485          175 FAIWF  179 (184)
Q Consensus       175 ~~~~~  179 (184)
                      .+...
T Consensus       164 ~l~~~  168 (606)
T 3t6q_A          164 AIHYL  168 (606)
T ss_dssp             CCCEE
T ss_pred             ccccc
Confidence            77654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.65  E-value=5.8e-16  Score=127.01  Aligned_cols=144  Identities=23%  Similarity=0.278  Sum_probs=112.1

Q ss_pred             ceeEEecC---------CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEE
Q 038485           24 WERVECSN---------TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKML   94 (184)
Q Consensus        24 ~~gv~c~~---------~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L   94 (184)
                      |..+.|..         .+..++.|++++|.+..   +++..|..+++|++|++++|.+.+..|..    |..+++|++|
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L   85 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT---LNQDEFASFPHLEELELNENIVSAVEPGA----FNNLFNLRTL   85 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEE
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccce---ECHhHccCCCCCCEEECCCCccCEeChhh----hhCCccCCEE
Confidence            66788864         24578999999999987   77778889999999999999998877776    8889999999


Q ss_pred             ECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccc
Q 038485           95 NLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGF  174 (184)
Q Consensus        95 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~  174 (184)
                      ++++|.+....+..|..+++|++|++++|.+++ ++...+..+++|++|++++|.+.+..+  ..+..+++|+.+++++|
T Consensus        86 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n  162 (477)
T 2id5_A           86 GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISH--RAFSGLNSLEQLTLEKC  162 (477)
T ss_dssp             ECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECT--TSSTTCTTCCEEEEESC
T ss_pred             ECCCCcCCccCcccccCCCCCCEEECCCCcccc-CChhHccccccCCEEECCCCccceeCh--hhccCCCCCCEEECCCC
Confidence            999998885555567888899999999998874 433378888888888888888877655  33445566666666666


Q ss_pred             cee
Q 038485          175 FAI  177 (184)
Q Consensus       175 ~~~  177 (184)
                      .+.
T Consensus       163 ~l~  165 (477)
T 2id5_A          163 NLT  165 (477)
T ss_dssp             CCS
T ss_pred             cCc
Confidence            554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.65  E-value=1.1e-15  Score=113.83  Aligned_cols=130  Identities=22%  Similarity=0.248  Sum_probs=113.7

Q ss_pred             EEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCc
Q 038485           37 IALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR  116 (184)
Q Consensus        37 ~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~  116 (184)
                      +.++.+++.+..   +|...   .++++.|++++|.+.+..+..    |..+++|+.|++++|.++...|..|..+++|+
T Consensus        14 ~~v~c~~~~l~~---iP~~l---~~~l~~L~l~~n~i~~i~~~~----~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~   83 (220)
T 2v9t_B           14 NIVDCRGKGLTE---IPTNL---PETITEIRLEQNTIKVIPPGA----FSPYKKLRRIDLSNNQISELAPDAFQGLRSLN   83 (220)
T ss_dssp             TEEECTTSCCSS---CCSSC---CTTCCEEECCSSCCCEECTTS----STTCTTCCEEECCSSCCCEECTTTTTTCSSCC
T ss_pred             CEEEcCCCCcCc---CCCcc---CcCCCEEECCCCcCCCcCHhH----hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC
Confidence            478999999987   76654   268999999999999877766    89999999999999999987799999999999


Q ss_pred             EEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485          117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF  179 (184)
Q Consensus       117 ~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~  179 (184)
                      .|++++|.++ .++...+..+++|+.|++++|.+.+.++  ..+..+++|+.+++++|.+..+
T Consensus        84 ~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~  143 (220)
T 2v9t_B           84 SLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRV--DAFQDLHNLNLLSLYDNKLQTI  143 (220)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCC
T ss_pred             EEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCH--HHcCCCCCCCEEECCCCcCCEE
Confidence            9999999998 7887578899999999999999998766  4566788899999999988754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.65  E-value=1.1e-15  Score=124.79  Aligned_cols=116  Identities=28%  Similarity=0.329  Sum_probs=92.1

Q ss_pred             ceeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEE
Q 038485           24 WERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKML   94 (184)
Q Consensus        24 ~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L   94 (184)
                      |..+.|...         +.+++.|++++|.+..   +++..|..+++|++|++++|.+.+..+..    |..+++|++|
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L  128 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM---IQADTFRHLHHLEVLQLGRNSIRQIEVGA----FNGLASLNTL  128 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEE
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCce---ECHHHcCCCCCCCEEECCCCccCCcChhh----ccCcccCCEE
Confidence            578888652         3578999999999987   77788889999999999999998877766    8888999999


Q ss_pred             ECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCC
Q 038485           95 NLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGG  147 (184)
Q Consensus        95 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~  147 (184)
                      ++++|.++...+..+..+++|+.|++++|.++ .++...+..+++|+.|++++
T Consensus       129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~  180 (452)
T 3zyi_A          129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGE  180 (452)
T ss_dssp             ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCC
T ss_pred             ECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCC
Confidence            99999988665666888888999999888887 55554555566666666655

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.65  E-value=2.9e-15  Score=115.91  Aligned_cols=142  Identities=23%  Similarity=0.195  Sum_probs=116.8

Q ss_pred             CceeEEecCCCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCC
Q 038485           23 QWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFN  102 (184)
Q Consensus        23 ~~~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~  102 (184)
                      ...++.......++++|++++|.+..   ++. .+..+++|++|++++|.+++..+..    |..+++|+.|++++|.++
T Consensus        66 ~l~~~~~~~~l~~L~~L~Ls~N~l~~---l~~-~~~~l~~L~~L~l~~N~l~~l~~~~----~~~l~~L~~L~L~~N~l~  137 (290)
T 1p9a_G           66 ELTKLQVDGTLPVLGTLDLSHNQLQS---LPL-LGQTLPALTVLDVSFNRLTSLPLGA----LRGLGELQELYLKGNELK  137 (290)
T ss_dssp             CCCEEECCSCCTTCCEEECCSSCCSS---CCC-CTTTCTTCCEEECCSSCCCCCCSST----TTTCTTCCEEECTTSCCC
T ss_pred             ccCcccCCCCCCcCCEEECCCCcCCc---Cch-hhccCCCCCEEECCCCcCcccCHHH----HcCCCCCCEEECCCCCCC
Confidence            34444444457889999999999986   554 4588999999999999999877776    899999999999999999


Q ss_pred             chhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccce
Q 038485          103 NSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFA  176 (184)
Q Consensus       103 ~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~  176 (184)
                      ...+..+..+++|+.|++++|+++ .++...+..+++|++|++++|+++..+.....   +..|..+++.+|.+
T Consensus       138 ~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~---~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          138 TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG---SHLLPFAFLHGNPW  207 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT---TCCCSEEECCSCCB
T ss_pred             ccChhhcccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCCccChhhcc---cccCCeEEeCCCCc
Confidence            666677889999999999999998 78776788999999999999999976554444   44666677777765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.65  E-value=6.7e-16  Score=131.63  Aligned_cols=148  Identities=24%  Similarity=0.290  Sum_probs=113.6

Q ss_pred             CCCceeEEecC---------CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCC
Q 038485           21 CCQWERVECSN---------TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNL   91 (184)
Q Consensus        21 ~c~~~gv~c~~---------~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L   91 (184)
                      .|.+..+.|..         .+.++++|++++|.+..   +++..|..+++|++|++++|.+.+..|..    +..+++|
T Consensus         3 ~~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L   75 (680)
T 1ziw_A            3 TVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRR---LPAANFTRYSQLTSLDVGFNTISKLEPEL----CQKLPML   75 (680)
T ss_dssp             -CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCC---CCGGGGGGGTTCSEEECCSSCCCCCCTTH----HHHCTTC
T ss_pred             eeECCeeECCCCCccccccccCCCCcEEECCCCCCCC---cCHHHHhCCCcCcEEECCCCccCccCHHH----HhcccCc
Confidence            34555566653         24578999999999987   77777888999999999999998887776    7888899


Q ss_pred             cEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccc
Q 038485           92 KMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKL  171 (184)
Q Consensus        92 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l  171 (184)
                      +.|++++|.++...+..++.+++|++|++++|.++ .++...++.+++|++|++++|.+.+.++  ..+..+++|+.+++
T Consensus        76 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L  152 (680)
T 1ziw_A           76 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKL--GTQVQLENLQELLL  152 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCC--CSSSCCTTCCEEEC
T ss_pred             CEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCc--hhhcccccCCEEEc
Confidence            99999999888544456888889999999998887 5554478888889999998888887655  33345666666777


Q ss_pred             cccceee
Q 038485          172 AGFFAIW  178 (184)
Q Consensus       172 ~~~~~~~  178 (184)
                      ++|.+.+
T Consensus       153 ~~n~l~~  159 (680)
T 1ziw_A          153 SNNKIQA  159 (680)
T ss_dssp             CSSCCCC
T ss_pred             cCCcccc
Confidence            7766643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.65  E-value=4.2e-16  Score=117.05  Aligned_cols=133  Identities=14%  Similarity=0.160  Sum_probs=100.6

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCc-CCCcchhhhhhhhcCCCCCcEEECCC-CCCCchhHHhhc
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNK-IASCVENEGIERLSRLNNLKMLNLSG-NSFNNSILSSLT  110 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~~~  110 (184)
                      +..+++|++++|.+..   +++..|..+++|++|++++|. +....+..    |..+++|+++++++ |.++...+..|.
T Consensus        30 ~~~l~~L~l~~n~l~~---i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~l~~~n~l~~i~~~~f~  102 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRT---IPSHAFSNLPNISRIYVSIDVTLQQLESHS----FYNLSKVTHIEIRNTRNLTYIDPDALK  102 (239)
T ss_dssp             CTTCCEEEEESCCCSE---ECTTTTTTCTTCCEEEEECCSSCCEECTTT----EESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred             CCcccEEEEeCCcceE---ECHHHccCCCCCcEEeCCCCCCcceeCHhH----cCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence            4578999999999987   777788899999999999997 77666555    88899999999998 888865566788


Q ss_pred             cCCCCcEEeCCCccccCcccHhhhcCCCCCc---EEECCCC-CCCccccCcccccccccee-ecccccccee
Q 038485          111 HLSSLRSLNLFWNRLEGSIDVKELDSLRDLE---ELDIGGN-KIDKFVVSKGTTNTIKNAN-LYKLAGFFAI  177 (184)
Q Consensus       111 ~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~---~L~ls~N-~l~~~~~~~~~~~~l~~L~-~~~l~~~~~~  177 (184)
                      .+++|+.|++++|.++ .+|.  +..+++|+   .|++++| .+.+.++  ..+..+++|+ .+++++|.+.
T Consensus       103 ~l~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~--~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          103 ELPLLKFLGIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPV--NAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             CCTTCCEEEEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECT--TTTTTTBSSEEEEECCSCCCC
T ss_pred             CCCCCCEEeCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCc--ccccchhcceeEEEcCCCCCc
Confidence            8888888888888877 4653  66666666   7777777 6666544  3344566666 6666666655

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=1.1e-15  Score=111.73  Aligned_cols=130  Identities=20%  Similarity=0.287  Sum_probs=98.4

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.+..   ++  .+..+++|++|++++|.+.+..+..    +..+++|++|++++|.+.+..|..+..+
T Consensus        65 l~~L~~L~l~~n~~~~---~~--~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~Ls~n~i~~~~~~~l~~l  135 (197)
T 4ezg_A           65 AHNIKDLTINNIHATN---YN--PISGLSNLERLRIMGKDVTSDKIPN----LSGLTSLTLLDISHSAHDDSILTKINTL  135 (197)
T ss_dssp             CTTCSEEEEESCCCSC---CG--GGTTCTTCCEEEEECTTCBGGGSCC----CTTCTTCCEEECCSSBCBGGGHHHHTTC
T ss_pred             CCCCCEEEccCCCCCc---ch--hhhcCCCCCEEEeECCccCcccChh----hcCCCCCCEEEecCCccCcHhHHHHhhC
Confidence            5677888888886654   32  4577888888888888887655655    7888889999999988887778888888


Q ss_pred             CCCcEEeCCCcc-ccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          113 SSLRSLNLFWNR-LEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       113 ~~L~~L~l~~n~-~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      ++|+.|++++|. ++ .++  .+..+++|+.|++++|++++..    .+..+++|+.+++++|.+.+
T Consensus       136 ~~L~~L~L~~n~~i~-~~~--~l~~l~~L~~L~l~~n~i~~~~----~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          136 PKVNSIDLSYNGAIT-DIM--PLKTLPELKSLNIQFDGVHDYR----GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SSCCEEECCSCTBCC-CCG--GGGGCSSCCEEECTTBCCCCCT----TGGGCSSCCEEEECBC----
T ss_pred             CCCCEEEccCCCCcc-ccH--hhcCCCCCCEEECCCCCCcChH----HhccCCCCCEEEeeCcccCC
Confidence            889999998887 65 665  5888888999999988888743    34556777788888887754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.65  E-value=1.3e-15  Score=123.96  Aligned_cols=116  Identities=26%  Similarity=0.354  Sum_probs=89.3

Q ss_pred             ceeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEE
Q 038485           24 WERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKML   94 (184)
Q Consensus        24 ~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L   94 (184)
                      +..+.|...         ...++.|++++|.+..   ++...|..+++|++|++++|.+....+..    |..+++|++|
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~~L  117 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQI---IKVNSFKHLRHLEILQLSRNHIRTIEIGA----FNGLANLNTL  117 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCE---ECTTTTSSCSSCCEEECCSSCCCEECGGG----GTTCSSCCEE
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCe---eCHHHhhCCCCCCEEECCCCcCCccChhh----ccCCccCCEE
Confidence            668888652         4568899999999987   77777888999999999999888776666    8888888888


Q ss_pred             ECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCC
Q 038485           95 NLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGG  147 (184)
Q Consensus        95 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~  147 (184)
                      ++++|.++...+..+..+++|+.|++++|.++ .++...+..+++|++|++++
T Consensus       118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~  169 (440)
T 3zyj_A          118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGE  169 (440)
T ss_dssp             ECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCC
T ss_pred             ECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCC
Confidence            88888888555556778888888888888876 55544566666666666665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=9.2e-16  Score=107.13  Aligned_cols=130  Identities=23%  Similarity=0.289  Sum_probs=105.1

Q ss_pred             CCceEEEecCCCCCC-ccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc
Q 038485           33 MSRVIALDLSDTYGG-EYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH  111 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~-~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~  111 (184)
                      ..+++.|++++|.+. +  .++ ..+..+++|++|++++|.+.+.  ..    +..+++|+.|++++|.+++..|..+..
T Consensus        16 ~~~l~~L~l~~n~l~~~--~~~-~~~~~l~~L~~L~l~~n~l~~~--~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~   86 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEG--KLE-GLTDEFEELEFLSTINVGLTSI--AN----LPKLNKLKKLELSDNRVSGGLEVLAEK   86 (149)
T ss_dssp             GGGCSEEECTTCBCBTT--BCC-SCCTTCTTCCEEECTTSCCCCC--TT----CCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred             CccCeEEEccCCcCChh--HHH-HHHhhcCCCcEEECcCCCCCCc--hh----hhcCCCCCEEECCCCcccchHHHHhhh
Confidence            467999999999998 2  144 4568899999999999999876  33    899999999999999999768888888


Q ss_pred             CCCCcEEeCCCccccCccc-HhhhcCCCCCcEEECCCCCCCccccC-ccccccccceeecccc
Q 038485          112 LSSLRSLNLFWNRLEGSID-VKELDSLRDLEELDIGGNKIDKFVVS-KGTTNTIKNANLYKLA  172 (184)
Q Consensus       112 l~~L~~L~l~~n~~~~~l~-~~~~~~~~~L~~L~ls~N~l~~~~~~-~~~~~~l~~L~~~~l~  172 (184)
                      +++|+++++++|.++ .++ ...+..+++|++|++++|++++.++. ...+..+++|+.++++
T Consensus        87 l~~L~~L~ls~N~i~-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           87 CPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTCCEEECTTSCCC-SHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCCEEECCCCcCC-ChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            999999999999998 443 13789999999999999999886541 1234455566655543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.64  E-value=1e-15  Score=121.77  Aligned_cols=135  Identities=23%  Similarity=0.255  Sum_probs=114.0

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..+++.|++++|.+..   +++..|..+++|++|++++|.+....+..    |..+++|+.|++++|.+....|..|..+
T Consensus        63 l~~L~~L~L~~N~i~~---i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~i~~~~~~~~~~l  135 (361)
T 2xot_A           63 LTNLHSLLLSHNHLNF---ISSEAFVPVPNLRYLDLSSNHLHTLDEFL----FSDLQALEVLLLYNNHIVVVDRNAFEDM  135 (361)
T ss_dssp             CTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             ccccCEEECCCCcCCc---cChhhccCCCCCCEEECCCCcCCcCCHHH----hCCCcCCCEEECCCCcccEECHHHhCCc
Confidence            6789999999999997   88888999999999999999999877766    8899999999999999997778899999


Q ss_pred             CCCcEEeCCCccccCcccHhhh---cCCCCCcEEECCCCCCCccccCccccccccc--eeecccccccee
Q 038485          113 SSLRSLNLFWNRLEGSIDVKEL---DSLRDLEELDIGGNKIDKFVVSKGTTNTIKN--ANLYKLAGFFAI  177 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~---~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~--L~~~~l~~~~~~  177 (184)
                      ++|+.|++++|.++ .+|...+   ..+++|+.|++++|++++.++  ..+..+..  +..+++.+|.+.
T Consensus       136 ~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~--~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          136 AQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPL--TDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCH--HHHHHSCHHHHTTEECCSSCEE
T ss_pred             ccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCH--HHhhhccHhhcceEEecCCCcc
Confidence            99999999999998 7877455   578999999999999998654  33444544  356777887764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.64  E-value=1.7e-15  Score=117.55  Aligned_cols=116  Identities=23%  Similarity=0.279  Sum_probs=61.8

Q ss_pred             ccCCCCCCCCEEeCCCCcCCC-cchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhh
Q 038485           55 SLFTPFQQLESLDLTDNKIAS-CVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKE  133 (184)
Q Consensus        55 ~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~  133 (184)
                      ..+..+++|++|++++|.+.+ ..|..    +..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++ .++...
T Consensus       144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~  218 (306)
T 2z66_A          144 GIFNGLSSLEVLKMAGNSFQENFLPDI----FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFP  218 (306)
T ss_dssp             TTTTTCTTCCEEECTTCEEGGGEECSC----CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS-BCCSGG
T ss_pred             hhcccCcCCCEEECCCCccccccchhH----HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC-ccChhh
Confidence            334445555555555555543 23333    555556666666666665444555555666666666666665 333324


Q ss_pred             hcCCCCCcEEECCCCCCCccccCccccccc-cceeecccccccee
Q 038485          134 LDSLRDLEELDIGGNKIDKFVVSKGTTNTI-KNANLYKLAGFFAI  177 (184)
Q Consensus       134 ~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l-~~L~~~~l~~~~~~  177 (184)
                      +..+++|+.|++++|++.+.++.  .+..+ ++|..+++++|.+.
T Consensus       219 ~~~l~~L~~L~L~~N~l~~~~~~--~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          219 YKCLNSLQVLDYSLNHIMTSKKQ--ELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             GTTCTTCCEEECTTSCCCBCSSS--SCCCCCTTCCEEECTTCCEE
T ss_pred             ccCcccCCEeECCCCCCcccCHH--HHHhhhccCCEEEccCCCee
Confidence            55566666666666666654442  22233 35555666666554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.64  E-value=7.6e-16  Score=120.29  Aligned_cols=86  Identities=16%  Similarity=0.110  Sum_probs=43.8

Q ss_pred             CcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecc
Q 038485           91 LKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYK  170 (184)
Q Consensus        91 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~  170 (184)
                      |+.|++++|.+.+..|..+..+++|+.|++++|.+++.++  .+..+++|++|++++|++++.+|  ..+..+++|+.++
T Consensus       199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~  274 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLP--QGLTQLKFLHSLN  274 (313)
T ss_dssp             CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEEECCSSCCEECCC--GGGGGCTTCCEEE
T ss_pred             ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC--cccccCCCCEEECcCCcccCcCC--hHHhcCcCCCEEE
Confidence            4444444444443344444455555555555555543222  24555556666666666655444  2334555666666


Q ss_pred             ccccceeeEE
Q 038485          171 LAGFFAIWFI  180 (184)
Q Consensus       171 l~~~~~~~~~  180 (184)
                      +++|.+++.+
T Consensus       275 Ls~N~l~~~i  284 (313)
T 1ogq_A          275 VSFNNLCGEI  284 (313)
T ss_dssp             CCSSEEEEEC
T ss_pred             CcCCcccccC
Confidence            6666665543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.63  E-value=2.2e-15  Score=118.30  Aligned_cols=146  Identities=27%  Similarity=0.384  Sum_probs=113.7

Q ss_pred             CCCCceeEEecC---------CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCC
Q 038485           20 DCCQWERVECSN---------TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNN   90 (184)
Q Consensus        20 ~~c~~~gv~c~~---------~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~   90 (184)
                      +.|.|..+.|..         ....++.|++++|.+..   +++..|..+++|++|++++|.+.+..|..    +..+++
T Consensus        31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~  103 (332)
T 2ft3_A           31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE---LRKDDFKGLQHLYALVLVNNKISKIHEKA----FSPLRK  103 (332)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECGGG----STTCTT
T ss_pred             CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc---cCHhHhhCCCCCcEEECCCCccCccCHhH----hhCcCC
Confidence            447899999864         13578999999999987   77778899999999999999999887777    899999


Q ss_pred             CcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecc
Q 038485           91 LKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYK  170 (184)
Q Consensus        91 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~  170 (184)
                      |++|++++|.+. .+|..+.  ++|++|++++|.++ .++...+..+++|++|++++|.+.........+..+ +|+.++
T Consensus       104 L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~  178 (332)
T 2ft3_A          104 LQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR  178 (332)
T ss_dssp             CCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB
T ss_pred             CCEEECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE
Confidence            999999999998 5565544  78999999999998 666657899999999999999986422222333333 444445


Q ss_pred             cccccee
Q 038485          171 LAGFFAI  177 (184)
Q Consensus       171 l~~~~~~  177 (184)
                      +++|.+.
T Consensus       179 l~~n~l~  185 (332)
T 2ft3_A          179 ISEAKLT  185 (332)
T ss_dssp             CCSSBCS
T ss_pred             CcCCCCC
Confidence            4554443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=3.6e-15  Score=108.89  Aligned_cols=127  Identities=24%  Similarity=0.308  Sum_probs=108.7

Q ss_pred             EEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCc
Q 038485           37 IALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR  116 (184)
Q Consensus        37 ~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~  116 (184)
                      +.++++++.+..   ++...   ..++++|++++|.++. .|..    +..+++|+.|++++|.++...+..|..+++|+
T Consensus        13 ~~l~~~~~~l~~---ip~~~---~~~l~~L~L~~n~i~~-ip~~----~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~   81 (193)
T 2wfh_A           13 TVVRCSNKGLKV---LPKGI---PRDVTELYLDGNQFTL-VPKE----LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL   81 (193)
T ss_dssp             TEEECTTSCCSS---CCSCC---CTTCCEEECCSSCCCS-CCGG----GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CEEEcCCCCCCc---CCCCC---CCCCCEEECCCCcCch-hHHH----hhcccCCCEEECCCCcCCEeCHhHccCCCCCC
Confidence            578999999987   77554   3689999999999984 4555    89999999999999999977778899999999


Q ss_pred             EEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485          117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       117 ~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      .|++++|.++ .++...+..+++|+.|++++|+++..++  ..+..+++|..+++++|.+.
T Consensus        82 ~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           82 TLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPE--GAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             EEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCT--TTTTTCTTCCEEECCSSCEE
T ss_pred             EEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCCeeCh--hhhhcCccccEEEeCCCCee
Confidence            9999999998 6665579999999999999999998665  44567888888899998874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=4.6e-15  Score=106.49  Aligned_cols=130  Identities=20%  Similarity=0.185  Sum_probs=109.1

Q ss_pred             eEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCC
Q 038485           36 VIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL  115 (184)
Q Consensus        36 l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L  115 (184)
                      .+.++++++.+..   ++...   .++++.|++++|.+.+..+..    +..+++|++|++++|.++...+..+..+++|
T Consensus         9 ~~~l~~~~~~l~~---~p~~~---~~~l~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   78 (177)
T 2o6r_A            9 GTEIRCNSKGLTS---VPTGI---PSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL   78 (177)
T ss_dssp             TTEEECCSSCCSS---CCTTC---CTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCEEEecCCCCcc---CCCCC---CCCCcEEEeCCCcccEeCHHH----hcCcccccEEECCCCcceEeChhHccCCCcc
Confidence            4678999999987   66543   378999999999999776665    7899999999999999996656668899999


Q ss_pred             cEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          116 RSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       116 ~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      +.|++++|.++ .++...+..+++|+.|++++|++++.++  ..+..+++|+.+++++|.+..
T Consensus        79 ~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           79 TILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPD--GIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCC
T ss_pred             CEEECCCCCcc-ccCHHHhhCCcccCEEECcCCcceEeCH--HHhcCCcccCEEEecCCCeec
Confidence            99999999998 6666468899999999999999997665  444567888888999998754

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.63  E-value=9.3e-16  Score=112.83  Aligned_cols=115  Identities=23%  Similarity=0.312  Sum_probs=101.5

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.+..   ++...|..+++|++|++++|.+....+..    +..+++|+.|++++|.+.+..+..+..+
T Consensus        51 l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l  123 (208)
T 2o6s_A           51 LTSLTQLYLGGNKLQS---LPNGVFNKLTSLTYLNLSTNQLQSLPNGV----FDKLTQLKELALNTNQLQSLPDGVFDKL  123 (208)
T ss_dssp             CTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cccCcEEECCCCccCc---cChhhcCCCCCcCEEECCCCcCCccCHhH----hcCccCCCEEEcCCCcCcccCHhHhccC
Confidence            6789999999999997   88888899999999999999999776665    7899999999999999996666678899


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcccc
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVV  155 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~  155 (184)
                      ++|+.|++++|.++ .++...+..+++|+.+++++|++.+..+
T Consensus       124 ~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          124 TQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             TTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             CcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCeecCCC
Confidence            99999999999998 6666468899999999999998876544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.63  E-value=2.1e-15  Score=115.47  Aligned_cols=137  Identities=23%  Similarity=0.255  Sum_probs=100.2

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.+..   +++..|..+++|++|++++|.+.+..+..    +..+++|+.|++++|.+....+..+..+
T Consensus        51 l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l  123 (276)
T 2z62_A           51 FPELQVLDLSRCEIQT---IEDGAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIGHL  123 (276)
T ss_dssp             CTTCSEEECTTCCCCE---ECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred             ccCCcEEECCCCcCCc---cCHHHccCCcCCCEEECCCCccCccChhh----hcCCccccEEECCCCCccccCchhcccC
Confidence            5678899999998886   77777788889999999999888776666    7888888888888888886555567788


Q ss_pred             CCCcEEeCCCccccC-cccHhhhcCCCCCcEEECCCCCCCccccC-cccccccccee-ecccccccee
Q 038485          113 SSLRSLNLFWNRLEG-SIDVKELDSLRDLEELDIGGNKIDKFVVS-KGTTNTIKNAN-LYKLAGFFAI  177 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~-~l~~~~~~~~~~L~~L~ls~N~l~~~~~~-~~~~~~l~~L~-~~~l~~~~~~  177 (184)
                      ++|++|++++|.+++ .+|. .+..+++|++|++++|++++.++. ...+..++.+. .+++++|.+.
T Consensus       124 ~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~  190 (276)
T 2z62_A          124 KTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN  190 (276)
T ss_dssp             TTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC
T ss_pred             CCCCEEECcCCccceecCch-hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccc
Confidence            888888888888873 2455 788888888888888888876542 22223333222 3444555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.62  E-value=3.6e-15  Score=110.96  Aligned_cols=115  Identities=21%  Similarity=0.301  Sum_probs=103.7

Q ss_pred             CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc
Q 038485           32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH  111 (184)
Q Consensus        32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~  111 (184)
                      ...+++.|++++|.+..   +++..|..+++|++|++++|.+.+..+..    |..+++|++|++++|.+++..|..+..
T Consensus        55 ~l~~L~~L~L~~N~i~~---i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~  127 (220)
T 2v70_A           55 KLPQLRKINFSNNKITD---IEEGAFEGASGVNEILLTSNRLENVQHKM----FKGLESLKTLMLRSNRITCVGNDSFIG  127 (220)
T ss_dssp             GCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCCCCGGG----GTTCSSCCEEECTTSCCCCBCTTSSTT
T ss_pred             cCCCCCEEECCCCcCCE---ECHHHhCCCCCCCEEECCCCccCccCHhH----hcCCcCCCEEECCCCcCCeECHhHcCC
Confidence            36789999999999997   88888899999999999999999888877    899999999999999999877889999


Q ss_pred             CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccc
Q 038485          112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFV  154 (184)
Q Consensus       112 l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~  154 (184)
                      +++|+.|++++|.++ .++...+..+++|+.|++++|++....
T Consensus       128 l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A          128 LSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             CTTCSEEECTTSCCC-CBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CccCCEEECCCCcCC-EECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            999999999999999 453348999999999999999987643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.62  E-value=3.6e-15  Score=124.37  Aligned_cols=137  Identities=26%  Similarity=0.295  Sum_probs=101.4

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      +..++.|++++|.+..   +++..|..+++|++|++++|.+.+..+..    |..+++|++|++++|.+....|..+..+
T Consensus        27 ~~~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGL   99 (570)
T ss_dssp             CSSCCEEECCSCCCCE---ECTTTTTTCSSCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             cccccEEEccCCccCc---cChhHhhCCCCceEEECCCCcCCccCccc----ccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence            4567888888888876   66667788888888888888887766665    7788888888888888876666778888


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcc-ccCccccccccceeeccccccceeeE
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF-VVSKGTTNTIKNANLYKLAGFFAIWF  179 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~-~~~~~~~~~l~~L~~~~l~~~~~~~~  179 (184)
                      ++|++|++++|.++ .++...++.+++|++|++++|.+.+. .|  ..+..+++|+.+++++|.+...
T Consensus       100 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp--~~~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A          100 SSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP--EYFSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             TTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCC--GGGGGCTTCCEEECTTSCCCEE
T ss_pred             cccccccccccccc-cCCCccccccccccEEecCCCccceecCh--hhhcccCCCCEEeCcCCcccee
Confidence            88888888888877 55543577788888888888887763 23  3345566777777777766543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.61  E-value=1.6e-15  Score=132.70  Aligned_cols=148  Identities=20%  Similarity=0.265  Sum_probs=117.4

Q ss_pred             CCCceeEEecCCCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcc-hhhhhhhhcCCCCCcEEECCCC
Q 038485           21 CCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCV-ENEGIERLSRLNNLKMLNLSGN   99 (184)
Q Consensus        21 ~c~~~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~~~~~l~~L~~L~l~~n   99 (184)
                      .|.|.+|.+  .+.++++|+|++|.+..   +.+..|..+++|++|++++|...+.. |..    |..+++|+.|++++|
T Consensus        13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~---i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~----f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A           13 FCNLTQVPQ--VLNTTERLLLSFNYIRT---VTASSFPFLEQLQLLELGSQYTPLTIDKEA----FRNLPNLRILDLGSS   83 (844)
T ss_dssp             CCCSSCCCS--SCTTCCEEEEESCCCCE---ECSSSCSSCCSCSEEEECTTCCCCEECTTT----TSSCTTCCEEECTTC
T ss_pred             CCCCCCCCC--CCCCcCEEECCCCcCCc---cChhHCcccccCeEEeCCCCCCccccCHHH----hcCCCCCCEEECCCC
Confidence            455666666  37889999999999987   77778899999999999998665554 555    888999999999999


Q ss_pred             CCCchhHHhhccCCCCcEEeCCCccccCcccH-hhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          100 SFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       100 ~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      .+.+..|..+..+++|++|++++|.+++.++. ..+..+++|++|++++|.+.+..+. ..+..+++|+.+++++|.+..
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~-~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH-PSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC-GGGGTCSSCCEEEEESSCCCC
T ss_pred             cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc-hhHhhCCCCCEEECCCCcCCe
Confidence            99877788899999999999999998855554 1378889999999999998876432 345567777777888877754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1.5e-15  Score=108.13  Aligned_cols=136  Identities=23%  Similarity=0.220  Sum_probs=110.5

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      +.++++|++++|.+.. ..++. .+..+++|++|++++|.+...  ..    +..+++|++|++++|.+.+..|..+..+
T Consensus        23 ~~~L~~L~l~~n~l~~-~~i~~-~~~~l~~L~~L~l~~n~l~~~--~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l   94 (168)
T 2ell_A           23 PAAVRELVLDNCKSND-GKIEG-LTAEFVNLEFLSLINVGLISV--SN----LPKLPKLKKLELSENRIFGGLDMLAEKL   94 (168)
T ss_dssp             TTSCSEEECCSCBCBT-TBCSS-CCGGGGGCCEEEEESSCCCCC--SS----CCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred             cccCCEEECCCCCCCh-hhHHH-HHHhCCCCCEEeCcCCCCCCh--hh----hccCCCCCEEECcCCcCchHHHHHHhhC
Confidence            5789999999999981 01543 368899999999999999876  33    8999999999999999997678888889


Q ss_pred             CCCcEEeCCCccccCcccH-hhhcCCCCCcEEECCCCCCCccccC-ccccccccceeecccccccee
Q 038485          113 SSLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNKIDKFVVS-KGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~l~~~~~~-~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      ++|+.|++++|.++ .++. ..+..+++|++|++++|++++.++. ...+..+++|+.++++.|.+.
T Consensus        95 ~~L~~L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           95 PNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             TTCCEEECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCCCEEeccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            99999999999998 5542 3789999999999999999876541 124556777777777777664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.60  E-value=9.3e-15  Score=109.32  Aligned_cols=129  Identities=22%  Similarity=0.204  Sum_probs=109.4

Q ss_pred             EEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCc
Q 038485           37 IALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR  116 (184)
Q Consensus        37 ~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~  116 (184)
                      +.++.+++.+..   +|...   .++|++|++++|.+.+..+..    |..+++|+.|++++|.+....+..+..+++|+
T Consensus        22 ~~v~c~~~~l~~---ip~~~---~~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~   91 (229)
T 3e6j_A           22 TTVDCRSKRHAS---VPAGI---PTNAQILYLHDNQITKLEPGV----FDSLINLKELYLGSNQLGALPVGVFDSLTQLT   91 (229)
T ss_dssp             TEEECTTSCCSS---CCSCC---CTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CEeEccCCCcCc---cCCCC---CCCCCEEEcCCCccCccCHHH----hhCccCCcEEECCCCCCCCcChhhcccCCCcC
Confidence            568999999987   77644   388999999999999988877    89999999999999999855556788999999


Q ss_pred             EEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485          117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF  179 (184)
Q Consensus       117 ~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~  179 (184)
                      .|++++|.++ .++...+..+++|+.|++++|+++..+..   +..+++|..+++++|.+...
T Consensus        92 ~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~~~l~~L~~L~L~~N~l~~~  150 (229)
T 3e6j_A           92 VLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTELPRG---IERLTHLTHLALDQNQLKSI  150 (229)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCSCCTT---GGGCTTCSEEECCSSCCCCC
T ss_pred             EEECCCCcCC-ccChhHhCcchhhCeEeccCCcccccCcc---cccCCCCCEEECCCCcCCcc
Confidence            9999999998 67665688999999999999999965433   35678888888999988754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.59  E-value=4.7e-15  Score=108.35  Aligned_cols=131  Identities=17%  Similarity=0.246  Sum_probs=110.9

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.+..   ++  .+..+++|++|++++|.+... + .    +..+++|++|++++|.+++..+..+..+
T Consensus        43 l~~L~~L~l~~n~i~~---l~--~l~~l~~L~~L~l~~n~~~~~-~-~----l~~l~~L~~L~l~~n~l~~~~~~~l~~l  111 (197)
T 4ezg_A           43 MNSLTYITLANINVTD---LT--GIEYAHNIKDLTINNIHATNY-N-P----ISGLSNLERLRIMGKDVTSDKIPNLSGL  111 (197)
T ss_dssp             HHTCCEEEEESSCCSC---CT--TGGGCTTCSEEEEESCCCSCC-G-G----GTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred             cCCccEEeccCCCccC---hH--HHhcCCCCCEEEccCCCCCcc-h-h----hhcCCCCCEEEeECCccCcccChhhcCC
Confidence            4678999999999986   55  368899999999999977643 2 3    8899999999999999997788889999


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCC-CCccccCccccccccceeeccccccceeeE
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK-IDKFVVSKGTTNTIKNANLYKLAGFFAIWF  179 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~-l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~  179 (184)
                      ++|+.|++++|.+++..+. .+..+++|++|++++|+ +... +   .+..+++|+.+++++|.+.++
T Consensus       112 ~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~~-~---~l~~l~~L~~L~l~~n~i~~~  174 (197)
T 4ezg_A          112 TSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDI-M---PLKTLPELKSLNIQFDGVHDY  174 (197)
T ss_dssp             TTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCCC-G---GGGGCSSCCEEECTTBCCCCC
T ss_pred             CCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCcccc-H---hhcCCCCCCEEECCCCCCcCh
Confidence            9999999999999854554 79999999999999998 7654 3   356678888888899988764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.59  E-value=9.6e-15  Score=118.88  Aligned_cols=137  Identities=21%  Similarity=0.256  Sum_probs=79.2

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.+..   +++..|..+++|++|++++|.++...+..    |..+++|+.|++++|.+....+..+..+
T Consensus        87 l~~L~~L~Ls~n~i~~---i~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~i~~~~~~~~~~l  159 (440)
T 3zyj_A           87 LRHLEILQLSRNHIRT---IEIGAFNGLANLNTLELFDNRLTTIPNGA----FVYLSKLKELWLRNNPIESIPSYAFNRI  159 (440)
T ss_dssp             CSSCCEEECCSSCCCE---ECGGGGTTCSSCCEEECCSSCCSSCCTTT----SCSCSSCCEEECCSCCCCEECTTTTTTC
T ss_pred             CCCCCEEECCCCcCCc---cChhhccCCccCCEEECCCCcCCeeCHhH----hhccccCceeeCCCCcccccCHHHhhhC
Confidence            4567777777777775   66666677777777777777777655544    6667777777777777664444445555


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCC----------------------CCCcEEECCCCCCCccccCccccccccceeecc
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSL----------------------RDLEELDIGGNKIDKFVVSKGTTNTIKNANLYK  170 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~----------------------~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~  170 (184)
                      ++|+.|++++|...+.++...+..+                      ++|+.|++++|++++.++  ..+..+++|+.++
T Consensus       160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~  237 (440)
T 3zyj_A          160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP--GSFQGLMHLQKLW  237 (440)
T ss_dssp             TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECT--TTTTTCTTCCEEE
T ss_pred             cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccCh--hhhccCccCCEEE
Confidence            5555555555322223333334444                      445555555555554433  2334455555555


Q ss_pred             ccccceee
Q 038485          171 LAGFFAIW  178 (184)
Q Consensus       171 l~~~~~~~  178 (184)
                      +++|.+..
T Consensus       238 L~~n~l~~  245 (440)
T 3zyj_A          238 MIQSQIQV  245 (440)
T ss_dssp             CTTCCCCE
T ss_pred             CCCCceeE
Confidence            55555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.59  E-value=6.7e-15  Score=123.86  Aligned_cols=139  Identities=19%  Similarity=0.170  Sum_probs=113.8

Q ss_pred             CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc
Q 038485           32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH  111 (184)
Q Consensus        32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~  111 (184)
                      ...++++|++++|.+..   +++..|..+++|++|++++|.+.+..|..    |..+++|++|++++|.+....+..++.
T Consensus        54 ~l~~L~~L~Ls~n~l~~---i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~  126 (606)
T 3vq2_A           54 NFSELQWLDLSRCEIET---IEDKAWHGLHHLSNLILTGNPIQSFSPGS----FSGLTSLENLVAVETKLASLESFPIGQ  126 (606)
T ss_dssp             TCTTCCEEECTTCCCCE---ECTTTTTTCTTCCEEECTTCCCCCCCTTS----STTCTTCCEEECTTSCCCCSSSSCCTT
T ss_pred             CCccCcEEeCCCCcccc---cCHHHhhchhhcCEeECCCCcccccChhh----cCCcccCCEEEccCCccccccccccCC
Confidence            36789999999999987   87888899999999999999999887877    899999999999999998666678999


Q ss_pred             CCCCcEEeCCCccccC-cccHhhhcCCCCCcEEECCCCCCCccccC-ccccccccc-eeeccccccceee
Q 038485          112 LSSLRSLNLFWNRLEG-SIDVKELDSLRDLEELDIGGNKIDKFVVS-KGTTNTIKN-ANLYKLAGFFAIW  178 (184)
Q Consensus       112 l~~L~~L~l~~n~~~~-~l~~~~~~~~~~L~~L~ls~N~l~~~~~~-~~~~~~l~~-L~~~~l~~~~~~~  178 (184)
                      +++|++|++++|.+++ .+|. .++.+++|++|++++|++++.++. ...+..++. +..+++++|.+..
T Consensus       127 l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~  195 (606)
T 3vq2_A          127 LITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF  195 (606)
T ss_dssp             CTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCE
T ss_pred             CCCCCEEeCCCCcccceechH-hHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcce
Confidence            9999999999999974 4676 899999999999999999987663 222333322 2356666666543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.59  E-value=1.3e-14  Score=118.57  Aligned_cols=113  Identities=20%  Similarity=0.246  Sum_probs=72.4

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.+..   +++..|..+++|++|++++|.+....+..    |..+++|++|++++|.+....+..+..+
T Consensus        98 l~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l  170 (452)
T 3zyi_A           98 LHHLEVLQLGRNSIRQ---IEVGAFNGLASLNTLELFDNWLTVIPSGA----FEYLSKLRELWLRNNPIESIPSYAFNRV  170 (452)
T ss_dssp             CTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCSBCCTTT----SSSCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred             CCCCCEEECCCCccCC---cChhhccCcccCCEEECCCCcCCccChhh----hcccCCCCEEECCCCCcceeCHhHHhcC
Confidence            5678888888888876   66677777888888888888887666655    6777788888888877774444455555


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCc
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK  152 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~  152 (184)
                      ++|+.|++++|...+.++...+..+++|+.|++++|.+++
T Consensus       171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence            5555555555322224443344445555555555554443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.59  E-value=1e-14  Score=113.68  Aligned_cols=133  Identities=16%  Similarity=0.166  Sum_probs=78.0

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcc--hhhhhhhh--cCCCCCcEEECCCCCCCc--hhH-
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCV--ENEGIERL--SRLNNLKMLNLSGNSFNN--SIL-  106 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~--p~~~~~~~--~~l~~L~~L~l~~n~~~~--~~p-  106 (184)
                      .++++|++++|.+..   +++..|..+++|++|++++|.+.+..  +..    +  ..+++|++|++++|.+++  ..+ 
T Consensus       149 ~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~~  221 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLN---FSCEQVRVFPALSTLDLSDNPELGERGLISA----LCPLKFPTLQVLALRNAGMETPSGVCS  221 (312)
T ss_dssp             TTCCEEEEESCSCCC---CCTTTCCCCSSCCEEECCSCTTCHHHHHHHH----SCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred             CCCcEEEeeCCCCcc---chHHHhccCCCCCEEECCCCCcCcchHHHHH----HHhccCCCCCEEECCCCcCcchHHHHH
Confidence            566666666666665   55556667777777777777665431  222    3  566777777777777762  112 


Q ss_pred             HhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          107 SSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       107 ~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      ..+..+++|+.|++++|.+++..+...+..+++|++|++++|.++..+....     ++|+.+++++|++++
T Consensus       222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-----~~L~~L~Ls~N~l~~  288 (312)
T 1wwl_A          222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-----AKLSVLDLSYNRLDR  288 (312)
T ss_dssp             HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-----SEEEEEECCSSCCCS
T ss_pred             HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-----CCceEEECCCCCCCC
Confidence            2334566777777777777644432244556667777777777664322111     455566666666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.59  E-value=5.1e-15  Score=121.38  Aligned_cols=134  Identities=19%  Similarity=0.249  Sum_probs=76.2

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.+..   +.+..|..+++|++|++++|.+....+..    |..+++|++|++++|.+....+..+..+
T Consensus        55 l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l  127 (477)
T 2id5_A           55 FPHLEELELNENIVSA---VEPGAFNNLFNLRTLGLRSNRLKLIPLGV----FTGLSNLTKLDISENKIVILLDYMFQDL  127 (477)
T ss_dssp             CTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCSCCTTS----STTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             CCCCCEEECCCCccCE---eChhhhhCCccCCEEECCCCcCCccCccc----ccCCCCCCEEECCCCccccCChhHcccc
Confidence            4566777777776665   55555666666666666666666554443    5566666666666666665555556666


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccce
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFA  176 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~  176 (184)
                      ++|+.|++++|.++ .++...+..+++|++|++++|.+.+.++  ..+..+++|+.+++++|.+
T Consensus       128 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          128 YNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPT--EALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             TTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCH--HHHTTCTTCCEEEEESCCC
T ss_pred             ccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCcccCh--hHhcccCCCcEEeCCCCcC
Confidence            66666666666665 3332245555666666666665554332  2223334444444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.58  E-value=9e-15  Score=120.78  Aligned_cols=143  Identities=21%  Similarity=0.154  Sum_probs=101.7

Q ss_pred             CCCCceeEEecCCCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhc-CCCCCcEEECCC
Q 038485           20 DCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLS-RLNNLKMLNLSG   98 (184)
Q Consensus        20 ~~c~~~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~-~l~~L~~L~l~~   98 (184)
                      ..|.+.++.+.. .+.++.|++++|.+..   +.+..+..+++|++|++++|.+++..|..    +. .+++|+.|++++
T Consensus       107 ~~N~l~~~~~~~-l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          107 ANNNISRVSCSR-GQGKKNIYLANNKITM---LRDLDEGCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEHLNLQY  178 (487)
T ss_dssp             CSSCCCCEEECC-CSSCEEEECCSSCCCS---GGGBCGGGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCEEECTT
T ss_pred             cCCcCCCCCccc-cCCCCEEECCCCCCCC---CCchhhcCCCCCCEEECCCCCCCCcChHH----HhhhCCcccEEecCC
Confidence            344556666654 5677888888888776   55556677788888888888888766665    54 678888888888


Q ss_pred             CCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485           99 NSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus        99 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      |.+++. | ....+++|+.|++++|.++ .+|. .+..+++|+.|++++|.+++.++.   +..+++|..+++++|.+.
T Consensus       179 N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~---l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          179 NFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGP-EFQSAAGVTWISLRNNKLVLIEKA---LRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             SCCCEE-E-CCCCCTTCCEEECCSSCCC-EECG-GGGGGTTCSEEECTTSCCCEECTT---CCCCTTCCEEECTTCCBC
T ss_pred             Cccccc-c-ccccCCCCCEEECCCCCCC-CCCH-hHcCCCCccEEEecCCcCcccchh---hccCCCCCEEEcCCCCCc
Confidence            888744 2 2345778888888888887 5665 577788888888888888875443   344666677777777765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.58  E-value=2.3e-14  Score=114.68  Aligned_cols=113  Identities=19%  Similarity=0.256  Sum_probs=99.2

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.+..   +++..|..+++|++|++++|.+.+..|..    +..+++|++|++++|.+....+..+..+
T Consensus        68 l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l  140 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEE---IDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHNT  140 (390)
T ss_dssp             CCCCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cccCcEEECCCCcccc---cChhhccCCCCcCEEECCCCCCCcCCHHH----hcCCCCCCEEECCCCccCcCCHHHhcCC
Confidence            4679999999999987   78778899999999999999999887776    8899999999999999994434446889


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcc
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF  153 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~  153 (184)
                      ++|++|++++|.++ .++...+..+++|++|++++|++++.
T Consensus       141 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          141 PKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             TTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             CCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCcc
Confidence            99999999999998 55554799999999999999999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.58  E-value=9.1e-15  Score=122.91  Aligned_cols=127  Identities=17%  Similarity=0.132  Sum_probs=106.6

Q ss_pred             ecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEe
Q 038485           40 DLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLN  119 (184)
Q Consensus        40 ~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~  119 (184)
                      +=++..+++   +|...   -..+++|++++|.++...+..    |..+++|++|++++|.++...+..|..+++|++|+
T Consensus        37 ~c~~~~l~~---vP~~l---p~~~~~LdLs~N~i~~l~~~~----f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~  106 (635)
T 4g8a_A           37 QCMELNFYK---IPDNL---PFSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI  106 (635)
T ss_dssp             ECTTSCCSS---CCSSS---CTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             ECCCCCcCc---cCCCC---CcCCCEEEeeCCCCCCCCHHH----HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEE
Confidence            444445555   66443   247999999999999887777    99999999999999999976677899999999999


Q ss_pred             CCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485          120 LFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF  179 (184)
Q Consensus       120 l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~  179 (184)
                      +++|+++ .++.+.|..+++|++|++++|++++.++  ..+..+++|+.+++++|.+..+
T Consensus       107 Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~--~~~~~L~~L~~L~Ls~N~l~~~  163 (635)
T 4g8a_A          107 LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSF  163 (635)
T ss_dssp             CTTCCCC-EECGGGGTTCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCC
T ss_pred             ccCCcCC-CCCHHHhcCCCCCCEEECCCCcCCCCCh--hhhhcCcccCeeccccCccccC
Confidence            9999998 7877689999999999999999998665  4466788899999999988654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.57  E-value=6.2e-15  Score=115.90  Aligned_cols=129  Identities=19%  Similarity=0.166  Sum_probs=69.1

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  113 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~  113 (184)
                      .++++|++++|.+..   ++.. +..+++|++|++++|.+.+. |..    +..+++|+.|++++|.+.+..|..++.++
T Consensus       183 ~~L~~L~L~~n~l~~---lp~~-l~~l~~L~~L~L~~N~l~~l-~~~----l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~  253 (328)
T 4fcg_A          183 VNLQSLRLEWTGIRS---LPAS-IANLQNLKSLKIRNSPLSAL-GPA----IHHLPKLEELDLRGCTALRNYPPIFGGRA  253 (328)
T ss_dssp             TTCCEEEEEEECCCC---CCGG-GGGCTTCCEEEEESSCCCCC-CGG----GGGCTTCCEEECTTCTTCCBCCCCTTCCC
T ss_pred             CCCCEEECcCCCcCc---chHh-hcCCCCCCEEEccCCCCCcC-chh----hccCCCCCEEECcCCcchhhhHHHhcCCC
Confidence            445555555555543   3322 35555666666666655543 222    55556666666666555555555555566


Q ss_pred             CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccc
Q 038485          114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGF  174 (184)
Q Consensus       114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~  174 (184)
                      +|+.|++++|.+.+.+|. .+..+++|++|++++|++.+.+|  ..+..+++|..+++..+
T Consensus       254 ~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~iP--~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          254 PLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVNLSRLP--SLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CCCEEECTTCTTCCBCCT-TGGGCTTCCEEECTTCTTCCCCC--GGGGGSCTTCEEECCGG
T ss_pred             CCCEEECCCCCchhhcch-hhhcCCCCCEEeCCCCCchhhcc--HHHhhccCceEEeCCHH
Confidence            666666666555545554 45556666666666665555555  22334444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.57  E-value=2.6e-14  Score=120.56  Aligned_cols=114  Identities=19%  Similarity=0.243  Sum_probs=100.1

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..+++.|++++|.+..   +++..|..+++|++|++++|.+.+..|..    |..+++|+.|++++|.+....+..|+.+
T Consensus        74 l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l  146 (597)
T 3oja_B           74 FRQVELLNLNDLQIEE---IDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHNT  146 (597)
T ss_dssp             CCCCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCCcEEECCCCCCCC---CChHHhcCCCCCCEEECCCCcCCCCCHHH----HcCCCCCCEEEeeCCCCCCCCHHHhccC
Confidence            4689999999999987   77778899999999999999999888776    8899999999999999995545557899


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccc
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFV  154 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~  154 (184)
                      ++|++|++++|.+++ ++...+..+++|++|++++|.+.+..
T Consensus       147 ~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~  187 (597)
T 3oja_B          147 PKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD  187 (597)
T ss_dssp             TTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             CCCCEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCCcC
Confidence            999999999999984 54447999999999999999998753

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.57  E-value=1.5e-14  Score=103.45  Aligned_cols=109  Identities=24%  Similarity=0.247  Sum_probs=92.8

Q ss_pred             EEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCc
Q 038485           37 IALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR  116 (184)
Q Consensus        37 ~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~  116 (184)
                      +++++++|.+..   ++...   ..++++|++++|.+++..|..    |..+++|+.|++++|.+++..+..|..+++|+
T Consensus        12 ~~l~~s~n~l~~---ip~~~---~~~l~~L~L~~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~   81 (170)
T 3g39_A           12 TTVDCSGKSLAS---VPTGI---PTTTQVLYLYDNQITKLEPGV----FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT   81 (170)
T ss_dssp             TEEECTTSCCSS---CCSCC---CTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CEEEeCCCCcCc---cCccC---CCCCcEEEcCCCcCCccChhh----hcCcccCCEEECCCCCcCccChhhccCCCCCC
Confidence            467788888886   66554   378999999999999888877    89999999999999999966666788999999


Q ss_pred             EEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccC
Q 038485          117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVS  156 (184)
Q Consensus       117 ~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~  156 (184)
                      +|++++|.++ .++...+..+++|+.|++++|++....+.
T Consensus        82 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c~c~~  120 (170)
T 3g39_A           82 QLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDCACSD  120 (170)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred             EEECCCCccC-EeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence            9999999998 67665689999999999999999876543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.56  E-value=2.9e-14  Score=110.32  Aligned_cols=104  Identities=29%  Similarity=0.401  Sum_probs=48.8

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.+..   +++  +..+++|++|++++|.+.+. + .    +..+++|+.|++++|.+.+.  +.+..+
T Consensus        67 l~~L~~L~L~~n~l~~---~~~--l~~l~~L~~L~l~~n~l~~~-~-~----l~~l~~L~~L~L~~n~i~~~--~~l~~l  133 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTD---IKP--LANLKNLGWLFLDENKVKDL-S-S----LKDLKKLKSLSLEHNGISDI--NGLVHL  133 (291)
T ss_dssp             CTTCCEEECCSSCCCC---CGG--GTTCTTCCEEECCSSCCCCG-G-G----GTTCTTCCEEECTTSCCCCC--GGGGGC
T ss_pred             CCCCCEEEccCCccCC---Ccc--cccCCCCCEEECCCCcCCCC-h-h----hccCCCCCEEECCCCcCCCC--hhhcCC
Confidence            3455566666665554   332  34555555555555555431 1 1    44455555555555554421  234444


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCc
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK  152 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~  152 (184)
                      ++|+.|++++|.++ .++  .+..+++|++|++++|++.+
T Consensus       134 ~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          134 PQLESLYLGNNKIT-DIT--VLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             TTCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCC
T ss_pred             CCCCEEEccCCcCC-cch--hhccCCCCCEEEccCCcccc
Confidence            44444444444444 221  34444444444444444444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.56  E-value=2.5e-14  Score=111.72  Aligned_cols=140  Identities=21%  Similarity=0.167  Sum_probs=101.0

Q ss_pred             CceeEEecCCCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhh-cCCCCCcEEECCCCCC
Q 038485           23 QWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERL-SRLNNLKMLNLSGNSF  101 (184)
Q Consensus        23 ~~~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~-~~l~~L~~L~l~~n~~  101 (184)
                      ...++.+.. ...+++|++++|.+..   +++..+..+++|++|++++|.+.+..+..    + ..+++|+.|++++|.+
T Consensus       110 ~l~~~~~~~-~~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          110 NISRVSCSR-GQGKKNIYLANNKITM---LRDLDEGCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEHLNLQYNFI  181 (317)
T ss_dssp             CCSEEEECC-CSSCEEEECCSSCCCS---GGGBCTGGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCEEECTTSCC
T ss_pred             ccCCcCccc-cCCCCEEECCCCCCCC---ccchhhhccCCCCEEECCCCCCCcccHHH----HhhccCcCCEEECCCCcC
Confidence            344444443 4567888888888776   66666677888888888888888766654    4 3678888888888888


Q ss_pred             CchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485          102 NNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       102 ~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      +.. + ....+++|+.|++++|.++ .++. .+..+++|+.|++++|++++.+..   +..+++|+.+++++|.+.
T Consensus       182 ~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~-~~~~l~~L~~L~L~~N~l~~l~~~---~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          182 YDV-K-GQVVFAKLKTLDLSSNKLA-FMGP-EFQSAAGVTWISLRNNKLVLIEKA---LRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CEE-E-CCCCCTTCCEEECCSSCCC-EECG-GGGGGTTCSEEECTTSCCCEECTT---CCCCTTCCEEECTTCCCB
T ss_pred             ccc-c-cccccccCCEEECCCCcCC-cchh-hhcccCcccEEECcCCcccchhhH---hhcCCCCCEEEccCCCcc
Confidence            743 2 3335788888888888887 6666 577888888888888888865432   345677777788888775

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.56  E-value=5.2e-14  Score=109.68  Aligned_cols=103  Identities=27%  Similarity=0.383  Sum_probs=43.3

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  113 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~  113 (184)
                      .+++.|++++|.+..   ++  .+..+++|++|++++|.+.+..+      +..+++|+.|++++|.+++..+  +..++
T Consensus        85 ~~L~~L~L~~n~l~~---~~--~~~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~~--l~~l~  151 (308)
T 1h6u_A           85 TKITELELSGNPLKN---VS--AIAGLQSIKTLDLTSTQITDVTP------LAGLSNLQVLYLDLNQITNISP--LAGLT  151 (308)
T ss_dssp             CSCCEEECCSCCCSC---CG--GGTTCTTCCEEECTTSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG--GGGCT
T ss_pred             CCCCEEEccCCcCCC---ch--hhcCCCCCCEEECCCCCCCCchh------hcCCCCCCEEECCCCccCcCcc--ccCCC
Confidence            344444444444443   21  23444444444444444443211      3444444444444444442211  34444


Q ss_pred             CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCc
Q 038485          114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK  152 (184)
Q Consensus       114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~  152 (184)
                      +|+.|++++|.++ .++.  +..+++|+.|++++|.+++
T Consensus       152 ~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          152 NLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             TCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             CccEEEccCCcCC-CChh--hcCCCCCCEEECCCCccCc
Confidence            4444444444444 2221  3444444444444444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.56  E-value=2e-14  Score=119.83  Aligned_cols=138  Identities=22%  Similarity=0.264  Sum_probs=113.9

Q ss_pred             CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc
Q 038485           32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH  111 (184)
Q Consensus        32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~  111 (184)
                      ...++++|++++|.+..   +++..|..+++|++|++++|.+....+..    |..+++|++|++++|.+....+..++.
T Consensus        50 ~l~~L~~L~Ls~n~i~~---i~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~  122 (570)
T 2z63_A           50 SFPELQVLDLSRCEIQT---IEDGAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIGH  122 (570)
T ss_dssp             TCSSCCEEECTTCCCCE---ECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTSCCCCSTTCSCTT
T ss_pred             CCCCceEEECCCCcCCc---cCcccccCchhCCEEeCcCCcCCccCHhh----hcCccccccccccccccccCCCccccc
Confidence            36789999999999987   88888899999999999999998877776    899999999999999998554446889


Q ss_pred             CCCCcEEeCCCccccC-cccHhhhcCCCCCcEEECCCCCCCccccCccccccccce----eeccccccceeeE
Q 038485          112 LSSLRSLNLFWNRLEG-SIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNA----NLYKLAGFFAIWF  179 (184)
Q Consensus       112 l~~L~~L~l~~n~~~~-~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L----~~~~l~~~~~~~~  179 (184)
                      +++|++|++++|.+++ .+|. .+..+++|++|++++|.+.+.++  ..+..+++|    ..+++++|.+...
T Consensus       123 l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~~~~~L~l~~n~l~~~  192 (570)
T 2z63_A          123 LKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQMPLLNLSLDLSLNPMNFI  192 (570)
T ss_dssp             CTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCCEECG--GGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred             cccccEEecCCCccceecChh-hhcccCCCCEEeCcCCccceecH--HHccchhccchhhhhcccCCCCceec
Confidence            9999999999999974 3566 79999999999999999988655  333445555    5667777776543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.55  E-value=1.5e-14  Score=103.88  Aligned_cols=133  Identities=21%  Similarity=0.155  Sum_probs=104.0

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.+..   ++ ......++|++|++++|.+.+.  +.    +..+++|++|++++|.+++..+..+..+
T Consensus        18 ~~~L~~L~l~~n~l~~---i~-~~~~~~~~L~~L~Ls~N~l~~~--~~----l~~l~~L~~L~Ls~N~l~~~~~~~~~~l   87 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPV---IE-NLGATLDQFDAIDFSDNEIRKL--DG----FPLLRRLKTLLVNNNRICRIGEGLDQAL   87 (176)
T ss_dssp             TTSCEEEECTTSCCCS---CC-CGGGGTTCCSEEECCSSCCCEE--CC----CCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             cCCceEEEeeCCCCch---hH-HhhhcCCCCCEEECCCCCCCcc--cc----cccCCCCCEEECCCCcccccCcchhhcC
Confidence            5689999999999986   43 2323344999999999999875  33    8999999999999999995444555889


Q ss_pred             CCCcEEeCCCccccCcccH-hhhcCCCCCcEEECCCCCCCccccC-ccccccccceeeccccccce
Q 038485          113 SSLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNKIDKFVVS-KGTTNTIKNANLYKLAGFFA  176 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~l~~~~~~-~~~~~~l~~L~~~~l~~~~~  176 (184)
                      ++|+.|++++|.++ .++. ..+..+++|+.|++++|++...+.. ...+..+.+|+.++++.|.+
T Consensus        88 ~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           88 PDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             TTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            99999999999997 6663 3588899999999999999865432 11345667777777777654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.55  E-value=1.2e-14  Score=113.33  Aligned_cols=136  Identities=15%  Similarity=0.117  Sum_probs=96.2

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCC-----CCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCch--h
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPF-----QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNS--I  105 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l-----~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~--~  105 (184)
                      ..++++|++++|.+..   . +..+..+     ++|++|++++|.+.+..+..    +..+++|++|++++|.+.+.  .
T Consensus       120 l~~L~~L~Ls~N~l~~---~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~  191 (312)
T 1wwl_A          120 GPDLNILNLRNVSWAT---R-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ----VRVFPALSTLDLSDNPELGERGL  191 (312)
T ss_dssp             SCCCSEEEEESCBCSS---S-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT----CCCCSSCCEEECCSCTTCHHHHH
T ss_pred             CCCccEEEccCCCCcc---h-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHH----hccCCCCCEEECCCCCcCcchHH
Confidence            4567777777777765   3 2333333     67777777777777766665    78888889999988887754  3


Q ss_pred             HHhh--ccCCCCcEEeCCCccccC--cccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485          106 LSSL--THLSSLRSLNLFWNRLEG--SIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       106 p~~~--~~l~~L~~L~l~~n~~~~--~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      |..+  ..+++|+.|++++|.+++  .++...+..+++|+.|++++|++.+.+| ...+..+++|+.+++++|.++
T Consensus       192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-APSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-CSCCCCCTTCCEEECTTSCCS
T ss_pred             HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-hhhhhhcCCCCEEECCCCccC
Confidence            4455  778889999999988872  2223345577889999999999888653 223345677888888888876

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.55  E-value=1.3e-14  Score=114.82  Aligned_cols=134  Identities=24%  Similarity=0.314  Sum_probs=106.1

Q ss_pred             CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHH--hh
Q 038485           32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILS--SL  109 (184)
Q Consensus        32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~--~~  109 (184)
                      ...++++|++++|.+..   +++..|..+++|++|++++|.++...+..    +..+++|++|++++|.+. .+|.  .+
T Consensus        74 ~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~-~l~~~~~~  145 (353)
T 2z80_A           74 RCVNLQALVLTSNGINT---IEEDSFSSLGSLEHLDLSYNYLSNLSSSW----FKPLSSLTFLNLLGNPYK-TLGETSLF  145 (353)
T ss_dssp             TCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCSSCCHHH----HTTCTTCSEEECTTCCCS-SSCSSCSC
T ss_pred             cCCCCCEEECCCCccCc---cCHhhcCCCCCCCEEECCCCcCCcCCHhH----hCCCccCCEEECCCCCCc-ccCchhhh
Confidence            36789999999999987   77777899999999999999999877665    788999999999999998 4444  68


Q ss_pred             ccCCCCcEEeCCCcc-ccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccce
Q 038485          110 THLSSLRSLNLFWNR-LEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFA  176 (184)
Q Consensus       110 ~~l~~L~~L~l~~n~-~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~  176 (184)
                      ..+++|+.|++++|. +. .++...+..+++|++|++++|.+.+..|.  .+..+++|+.+++++|.+
T Consensus       146 ~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          146 SHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPK--SLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             TTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTT--TTTTCSEEEEEEEECSCS
T ss_pred             ccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHH--HHhccccCCeecCCCCcc
Confidence            889999999999984 65 56554788899999999999999887552  333444555555554443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.55  E-value=1.7e-14  Score=122.69  Aligned_cols=149  Identities=11%  Similarity=0.143  Sum_probs=121.4

Q ss_pred             CCCceeEEe-cCCCCceEEEecCCCCCCcc-----cc---------ccCccCC--CCCCCCEEeCCCCcCCCcchhhhhh
Q 038485           21 CCQWERVEC-SNTMSRVIALDLSDTYGGEY-----WY---------LNASLFT--PFQQLESLDLTDNKIASCVENEGIE   83 (184)
Q Consensus        21 ~c~~~gv~c-~~~~~~l~~L~l~~n~l~~~-----~~---------~~~~~~~--~l~~L~~L~ls~n~l~~~~p~~~~~   83 (184)
                      .+...|+.- .....++++|++++|.+.+.     |.         ..+..+.  .+++|++|++++|.+.+..|..   
T Consensus       192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~---  268 (636)
T 4eco_A          192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF---  268 (636)
T ss_dssp             SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT---
T ss_pred             cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH---
Confidence            445666332 22367899999999998861     00         0334456  8999999999999999999987   


Q ss_pred             hhcCCCCCcEEECCCCC-CCc-hhHHhhccC------CCCcEEeCCCccccCcccH-hhhcCCCCCcEEECCCCCCCccc
Q 038485           84 RLSRLNNLKMLNLSGNS-FNN-SILSSLTHL------SSLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNKIDKFV  154 (184)
Q Consensus        84 ~~~~l~~L~~L~l~~n~-~~~-~~p~~~~~l------~~L~~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~l~~~~  154 (184)
                       +..+++|+.|++++|. +++ .+|..++.+      ++|+.|++++|.++ .+|. +.++.+++|++|++++|.+.|.+
T Consensus       269 -l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i  346 (636)
T 4eco_A          269 -LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKL  346 (636)
T ss_dssp             -TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred             -HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccch
Confidence             9999999999999998 998 889988876      99999999999998 7874 36999999999999999999777


Q ss_pred             cCccccccccceeecccccccee
Q 038485          155 VSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       155 ~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      |   .+..+++|+.+++++|.+.
T Consensus       347 p---~~~~l~~L~~L~L~~N~l~  366 (636)
T 4eco_A          347 P---AFGSEIKLASLNLAYNQIT  366 (636)
T ss_dssp             C---CCEEEEEESEEECCSSEEE
T ss_pred             h---hhCCCCCCCEEECCCCccc
Confidence            7   4556777888888888876

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.54  E-value=5.8e-14  Score=109.39  Aligned_cols=126  Identities=21%  Similarity=0.358  Sum_probs=102.5

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.+..   +++  +..+++|++|++++|.+.+. + .    +..+++|+.|++++|.+.+ .+ .+..+
T Consensus        62 l~~L~~L~L~~n~i~~---~~~--~~~l~~L~~L~L~~n~l~~~-~-~----~~~l~~L~~L~l~~n~l~~-~~-~l~~l  128 (308)
T 1h6u_A           62 LNNLIGLELKDNQITD---LAP--LKNLTKITELELSGNPLKNV-S-A----IAGLQSIKTLDLTSTQITD-VT-PLAGL  128 (308)
T ss_dssp             CTTCCEEECCSSCCCC---CGG--GTTCCSCCEEECCSCCCSCC-G-G----GTTCTTCCEEECTTSCCCC-CG-GGTTC
T ss_pred             cCCCCEEEccCCcCCC---Chh--HccCCCCCEEEccCCcCCCc-h-h----hcCCCCCCEEECCCCCCCC-ch-hhcCC
Confidence            6789999999999886   554  68899999999999998864 3 3    8899999999999999985 34 38889


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      ++|+.|++++|.++ .++.  +..+++|+.|++++|.+++.++    +..+++|+.+++++|.+..
T Consensus       129 ~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          129 SNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             TTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCC
T ss_pred             CCCCEEECCCCccC-cCcc--ccCCCCccEEEccCCcCCCChh----hcCCCCCCEEECCCCccCc
Confidence            99999999999998 5653  8889999999999999987554    4456666777777776654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.54  E-value=1.1e-14  Score=124.14  Aligned_cols=138  Identities=20%  Similarity=0.190  Sum_probs=100.9

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.+..   +.+..|..+++|++|++++|.+....+..    |..+++|++|++++|.+.+..|..++.+
T Consensus        48 l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l  120 (680)
T 1ziw_A           48 YSQLTSLDVGFNTISK---LEPELCQKLPMLKVLNLQHNELSQLSDKT----FAFCTNLTELHLMSNSIQKIKNNPFVKQ  120 (680)
T ss_dssp             GTTCSEEECCSSCCCC---CCTTHHHHCTTCCEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCSCTTTTC
T ss_pred             CCcCcEEECCCCccCc---cCHHHHhcccCcCEEECCCCccCccChhh----hccCCCCCEEECCCCccCccChhHcccc
Confidence            4678888888888876   66666777888888888888887665555    7788888888888888876556677888


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      ++|++|++++|.+++..+. .+..+++|++|++++|.+++.++.......+++|+.+++++|.+..
T Consensus       121 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~  185 (680)
T 1ziw_A          121 KNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE  185 (680)
T ss_dssp             TTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred             CCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence            8888888888888744443 6777888888888888887765533222234667777777776654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.54  E-value=3.6e-14  Score=101.93  Aligned_cols=110  Identities=21%  Similarity=0.212  Sum_probs=94.4

Q ss_pred             EEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCc
Q 038485           37 IALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR  116 (184)
Q Consensus        37 ~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~  116 (184)
                      +.++++++.+..   +|...   ..+|++|++++|.+.+..|..    |..+++|+.|++++|.+++..+..|..+++|+
T Consensus        15 ~~l~~~~n~l~~---iP~~~---~~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~   84 (174)
T 2r9u_A           15 TLVNCQNIRLAS---VPAGI---PTDKQRLWLNNNQITKLEPGV----FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLT   84 (174)
T ss_dssp             SEEECCSSCCSS---CCSCC---CTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cEEEeCCCCCCc---cCCCc---CCCCcEEEeCCCCccccCHHH----hcCCcCCCEEECCCCCCCccChhHhCCcchhh
Confidence            578999999987   77654   278999999999999888877    89999999999999999965555678999999


Q ss_pred             EEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCc
Q 038485          117 SLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSK  157 (184)
Q Consensus       117 ~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~  157 (184)
                      .|++++|.++ .++...+..+++|++|++++|++.......
T Consensus        85 ~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~  124 (174)
T 2r9u_A           85 QLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWDCECRDI  124 (174)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred             EEECCCCccc-eeCHHHhccccCCCEEEeCCCCcccccccH
Confidence            9999999998 677656999999999999999998765433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.54  E-value=1.4e-14  Score=120.42  Aligned_cols=118  Identities=25%  Similarity=0.357  Sum_probs=103.8

Q ss_pred             CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCc-hhHHhhc
Q 038485           32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNN-SILSSLT  110 (184)
Q Consensus        32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~  110 (184)
                      ...++++|++++|.+..   +++..|..+++|++|++++|.+.+..+..    +..+++|++|++++|.+.+ ..|..++
T Consensus        48 ~l~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~  120 (549)
T 2z81_A           48 ACANLQVLILKSSRINT---IEGDAFYSLGSLEHLDLSDNHLSSLSSSW----FGPLSSLKYLNLMGNPYQTLGVTSLFP  120 (549)
T ss_dssp             SCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTSCCCSCCHHH----HTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred             cCCcccEEECCCCCcCc---cChhhccccccCCEEECCCCccCccCHHH----hccCCCCcEEECCCCcccccchhhhhh
Confidence            46789999999999997   78788899999999999999999888877    8999999999999999985 3467788


Q ss_pred             cCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccC
Q 038485          111 HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVS  156 (184)
Q Consensus       111 ~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~  156 (184)
                      .+++|++|++++|.+.+.++...+..+++|++|++++|.+.+..|.
T Consensus       121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  166 (549)
T 2z81_A          121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ  166 (549)
T ss_dssp             TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence            9999999999999854577755799999999999999999986653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.54  E-value=4.5e-14  Score=116.84  Aligned_cols=127  Identities=21%  Similarity=0.232  Sum_probs=92.0

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  113 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~  113 (184)
                      .++++|++++|.+..   +++..|..+++|++|++++|.+.+..|..    |..+++|++|++++|.++ .+|..  .++
T Consensus        21 ~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~l~   90 (520)
T 2z7x_B           21 QKTTILNISQNYISE---LWTSDILSLSKLRILIISHNRIQYLDISV----FKFNQELEYLDLSHNKLV-KISCH--PTV   90 (520)
T ss_dssp             TTCSEEECCSSCCCC---CCHHHHTTCTTCCEEECCSSCCCEEEGGG----GTTCTTCCEEECCSSCCC-EEECC--CCC
T ss_pred             ccccEEECCCCcccc---cChhhccccccccEEecCCCccCCcChHH----hhcccCCCEEecCCCcee-ecCcc--ccC
Confidence            577888888888776   66566677888888888888887766666    778888888888888887 45554  677


Q ss_pred             CCcEEeCCCccccC-cccHhhhcCCCCCcEEECCCCCCCccccCccccccccce--eeccccccce
Q 038485          114 SLRSLNLFWNRLEG-SIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNA--NLYKLAGFFA  176 (184)
Q Consensus       114 ~L~~L~l~~n~~~~-~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L--~~~~l~~~~~  176 (184)
                      +|++|++++|.+++ .+|. .++.+++|++|++++|.+.+.     .+..+++|  +.+++++|.+
T Consensus        91 ~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           91 NLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEKS-----SVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCGG-----GGGGGTTSCEEEEEEEECTT
T ss_pred             CccEEeccCCccccccchh-hhccCCcceEEEecCcccchh-----hccccccceeeEEEeecccc
Confidence            88888888888774 2444 677888888888888887762     23334444  6677777665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.53  E-value=1.1e-13  Score=116.47  Aligned_cols=136  Identities=24%  Similarity=0.293  Sum_probs=92.2

Q ss_pred             ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCC
Q 038485           35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS  114 (184)
Q Consensus        35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~  114 (184)
                      .++.|++++|.+..   +++..|..+++|++|++++|.+.. .|..    +..+++|++|++++|.+.+..|..+..+++
T Consensus       255 ~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~-lp~~----l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  326 (606)
T 3t6q_A          255 SVESINLQKHYFFN---ISSNTFHCFSGLQELDLTATHLSE-LPSG----LVGLSTLKKLVLSANKFENLCQISASNFPS  326 (606)
T ss_dssp             EEEEEECTTCCCSS---CCTTTTTTCTTCSEEECTTSCCSC-CCSS----CCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred             ceeEEEeecCccCc---cCHHHhccccCCCEEeccCCccCC-CChh----hcccccCCEEECccCCcCcCchhhhhccCc
Confidence            67788888887776   666667777888888888887773 4444    677778888888888777666667777777


Q ss_pred             CcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          115 LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       115 L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      |+++++++|.+.+.++...+..+++|++|++++|.+.+.......+..+++|+.+++++|.+..
T Consensus       327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  390 (606)
T 3t6q_A          327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS  390 (606)
T ss_dssp             CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE
T ss_pred             CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc
Confidence            7777777777665565545667777777777777776654222334445555555555555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.53  E-value=1.1e-13  Score=105.60  Aligned_cols=126  Identities=29%  Similarity=0.380  Sum_probs=96.2

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..+++.|++++|.+..   +++  +..+++|++|++++|.+.+..+      +.. ++|+.|++++|.+++ . +.+..+
T Consensus        62 l~~L~~L~L~~N~i~~---~~~--l~~l~~L~~L~L~~N~l~~l~~------~~~-~~L~~L~L~~N~l~~-~-~~l~~l  127 (263)
T 1xeu_A           62 FTNLKELHLSHNQISD---LSP--LKDLTKLEELSVNRNRLKNLNG------IPS-ACLSRLFLDNNELRD-T-DSLIHL  127 (263)
T ss_dssp             CTTCCEEECCSSCCCC---CGG--GTTCSSCCEEECCSSCCSCCTT------CCC-SSCCEEECCSSCCSB-S-GGGTTC
T ss_pred             CCCCCEEECCCCccCC---Chh--hccCCCCCEEECCCCccCCcCc------ccc-CcccEEEccCCccCC-C-hhhcCc
Confidence            5678888888888876   444  6778888888888888876432      334 788888888888874 3 357888


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF  179 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~  179 (184)
                      ++|+.|++++|+++ .++  .+..+++|+.|++++|++++.    ..+..+++|+.+++++|.+...
T Consensus       128 ~~L~~L~Ls~N~i~-~~~--~l~~l~~L~~L~L~~N~i~~~----~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          128 KNLEILSIRNNKLK-SIV--MLGFLSKLEVLDLHGNEITNT----GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TTCCEEECTTSCCC-BCG--GGGGCTTCCEEECTTSCCCBC----TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ccccEEECCCCcCC-CCh--HHccCCCCCEEECCCCcCcch----HHhccCCCCCEEeCCCCcccCC
Confidence            88999999999887 554  578888999999999998875    3445677777888888877643

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.53  E-value=5e-14  Score=110.38  Aligned_cols=133  Identities=24%  Similarity=0.191  Sum_probs=105.0

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..+++.|++++|.+..   ++...+   ++|++|++++|.+.+..+..    +..+++|+.|++++|.+.+..+..+..+
T Consensus       170 l~~L~~L~l~~n~l~~---l~~~~~---~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  239 (330)
T 1xku_A          170 MKKLSYIRIADTNITT---IPQGLP---PSLTELHLDGNKITKVDAAS----LKGLNNLAKLGLSFNSISAVDNGSLANT  239 (330)
T ss_dssp             CTTCCEEECCSSCCCS---CCSSCC---TTCSEEECTTSCCCEECTGG----GTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             CCCcCEEECCCCcccc---CCcccc---ccCCEEECCCCcCCccCHHH----hcCCCCCCEEECCCCcCceeChhhccCC
Confidence            5678999999998886   655442   78999999999998776766    8889999999999999987667778888


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCcccc----ccccceeecccccccee
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTT----NTIKNANLYKLAGFFAI  177 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~----~~l~~L~~~~l~~~~~~  177 (184)
                      ++|+.|++++|.++ .+|. .+..+++|+.|++++|++++.++....-    .....+..+++.+|.+.
T Consensus       240 ~~L~~L~L~~N~l~-~lp~-~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          240 PHLRELHLNNNKLV-KVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             TTCCEEECCSSCCS-SCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCCCEEECCCCcCc-cCCh-hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence            99999999999998 7876 6888899999999999998765533211    12355667777788774

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.53  E-value=1e-13  Score=109.08  Aligned_cols=127  Identities=26%  Similarity=0.353  Sum_probs=99.0

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.+..   +++  +..+++|++|++++|.+... + .    +..+++|+.+++++|.+.+.  +.+..+
T Consensus       220 ~~~L~~L~l~~n~l~~---~~~--~~~l~~L~~L~l~~n~l~~~-~-~----~~~l~~L~~L~l~~n~l~~~--~~~~~l  286 (347)
T 4fmz_A          220 MTRLNSLKIGNNKITD---LSP--LANLSQLTWLEIGTNQISDI-N-A----VKDLTKLKMLNVGSNQISDI--SVLNNL  286 (347)
T ss_dssp             CTTCCEEECCSSCCCC---CGG--GTTCTTCCEEECCSSCCCCC-G-G----GTTCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred             CCcCCEEEccCCccCC---Ccc--hhcCCCCCEEECCCCccCCC-h-h----HhcCCCcCEEEccCCccCCC--hhhcCC
Confidence            5678888888888876   443  67888899999999888764 2 2    78889999999999988853  457788


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      ++|+.|++++|.+++ .+...+..+++|+.|++++|++++.+|    +..+++|+.+++++|.++
T Consensus       287 ~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          287 SQLNSLFLNNNQLGN-EDMEVIGGLTNLTTLFLSQNHITDIRP----LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             TTCSEEECCSSCCCG-GGHHHHHTCTTCSEEECCSSSCCCCGG----GGGCTTCSEESSSCC---
T ss_pred             CCCCEEECcCCcCCC-cChhHhhccccCCEEEccCCccccccC----hhhhhccceeehhhhccc
Confidence            999999999999884 444478889999999999999988765    456777888888888774

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.52  E-value=1.4e-13  Score=106.52  Aligned_cols=129  Identities=24%  Similarity=0.308  Sum_probs=108.8

Q ss_pred             cCCCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhh
Q 038485           30 SNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL  109 (184)
Q Consensus        30 ~~~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~  109 (184)
                      .....+++.|++++|.+..   ++.  +..+++|++|++++|.+.+. + .    +..+++|+.|++++|.+++.  ..+
T Consensus        86 l~~l~~L~~L~l~~n~l~~---~~~--l~~l~~L~~L~L~~n~i~~~-~-~----l~~l~~L~~L~l~~n~l~~~--~~l  152 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKD---LSS--LKDLKKLKSLSLEHNGISDI-N-G----LVHLPQLESLYLGNNKITDI--TVL  152 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCC---GGG--GTTCTTCCEEECTTSCCCCC-G-G----GGGCTTCCEEECCSSCCCCC--GGG
T ss_pred             cccCCCCCEEECCCCcCCC---Chh--hccCCCCCEEECCCCcCCCC-h-h----hcCCCCCCEEEccCCcCCcc--hhh
Confidence            3347889999999999986   443  68899999999999999875 3 3    78999999999999999854  678


Q ss_pred             ccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       110 ~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      ..+++|+.|++++|.++ .++.  +..+++|+.|++++|.+++.+    .+..+++|+.+++++|.+..
T Consensus       153 ~~l~~L~~L~L~~N~l~-~~~~--l~~l~~L~~L~L~~N~i~~l~----~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          153 SRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKNHISDLR----ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             GGCTTCSEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCBCG----GGTTCTTCSEEEEEEEEEEC
T ss_pred             ccCCCCCEEEccCCccc-cchh--hcCCCccCEEECCCCcCCCCh----hhccCCCCCEEECcCCcccC
Confidence            89999999999999998 5553  889999999999999998752    25667888888888888764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.52  E-value=3e-14  Score=110.95  Aligned_cols=134  Identities=14%  Similarity=0.134  Sum_probs=83.5

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCc--chhhhhhhhcCCCCCcEEECCCCCCCchhHH---
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASC--VENEGIERLSRLNNLKMLNLSGNSFNNSILS---  107 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~---  107 (184)
                      ..++++|++++|.+..   +++..|..+++|++|++++|.+.+.  .+..  ..+..+++|++|++++|.++ ..+.   
T Consensus       144 ~~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~Ls~N~l~-~l~~~~~  217 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPA---FSCEQVRAFPALTSLDLSDNPGLGERGLMAA--LCPHKFPAIQNLALRNTGME-TPTGVCA  217 (310)
T ss_dssp             CSCCCEEEEECCSSCC---CCTTSCCCCTTCCEEECCSCTTCHHHHHHTT--SCTTSSCCCCSCBCCSSCCC-CHHHHHH
T ss_pred             ccCCCEEEeeCCCcch---hhHHHhccCCCCCEEECCCCCCccchhhhHH--HhhhcCCCCCEEECCCCCCC-chHHHHH
Confidence            4577778888887765   6666677788888888888876542  1111  00246677777777777776 2222   


Q ss_pred             -hhccCCCCcEEeCCCccccCcccHhhhcCC---CCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          108 -SLTHLSSLRSLNLFWNRLEGSIDVKELDSL---RDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       108 -~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~---~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                       .+..+++|++|++++|.+++..|. .+..+   ++|++|++++|+++..+...  +   ++|+.+++++|++++
T Consensus       218 ~l~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~---~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          218 ALAAAGVQPHSLDLSHNSLRATVNP-SAPRCMWSSALNSLNLSFAGLEQVPKGL--P---AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             HHHHHTCCCSSEECTTSCCCCCCCS-CCSSCCCCTTCCCEECCSSCCCSCCSCC--C---SCCSCEECCSCCCCS
T ss_pred             HHHhcCCCCCEEECCCCCCCccchh-hHHhccCcCcCCEEECCCCCCCchhhhh--c---CCCCEEECCCCcCCC
Confidence             245667777777777777744444 44444   57777777777777443211  1   455666666666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.51  E-value=5.4e-14  Score=110.33  Aligned_cols=107  Identities=28%  Similarity=0.312  Sum_probs=53.1

Q ss_pred             ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCC
Q 038485           35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS  114 (184)
Q Consensus        35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~  114 (184)
                      +++.|++++|.+..   ++...+   ++|++|++++|.+.+..+..    +..+++|+.|++++|.+.+..+..+..+++
T Consensus       173 ~L~~L~l~~n~l~~---l~~~~~---~~L~~L~l~~n~i~~~~~~~----l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  242 (332)
T 2ft3_A          173 KLNYLRISEAKLTG---IPKDLP---ETLNELHLDHNKIQAIELED----LLRYSKLYRLGLGHNQIRMIENGSLSFLPT  242 (332)
T ss_dssp             CCSCCBCCSSBCSS---CCSSSC---SSCSCCBCCSSCCCCCCTTS----STTCTTCSCCBCCSSCCCCCCTTGGGGCTT
T ss_pred             ccCEEECcCCCCCc---cCcccc---CCCCEEECCCCcCCccCHHH----hcCCCCCCEEECCCCcCCcCChhHhhCCCC
Confidence            44555555555554   333221   34555555555555444333    445555555555555555443444555555


Q ss_pred             CcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcc
Q 038485          115 LRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF  153 (184)
Q Consensus       115 L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~  153 (184)
                      |+.|++++|.++ .+|. .+..+++|+.|++++|++++.
T Consensus       243 L~~L~L~~N~l~-~lp~-~l~~l~~L~~L~l~~N~l~~~  279 (332)
T 2ft3_A          243 LRELHLDNNKLS-RVPA-GLPDLKLLQVVYLHTNNITKV  279 (332)
T ss_dssp             CCEEECCSSCCC-BCCT-TGGGCTTCCEEECCSSCCCBC
T ss_pred             CCEEECCCCcCe-ecCh-hhhcCccCCEEECCCCCCCcc
Confidence            555555555554 4444 345555555555555555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.51  E-value=1.1e-14  Score=109.20  Aligned_cols=110  Identities=17%  Similarity=0.228  Sum_probs=67.4

Q ss_pred             CCceEEEecCCCC-CCccccccCccCCCCCCCCEEeCCC-CcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhc
Q 038485           33 MSRVIALDLSDTY-GGEYWYLNASLFTPFQQLESLDLTD-NKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT  110 (184)
Q Consensus        33 ~~~l~~L~l~~n~-l~~~~~~~~~~~~~l~~L~~L~ls~-n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~  110 (184)
                      ..++++|++++|. +..   +++..|..+++|++|++++ |.+....+..    |..+++|+.+++++|.+++ +|. +.
T Consensus        54 l~~L~~L~l~~n~~l~~---i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~----f~~l~~L~~L~l~~n~l~~-lp~-~~  124 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQ---LESHSFYNLSKVTHIEIRNTRNLTYIDPDA----LKELPLLKFLGIFNTGLKM-FPD-LT  124 (239)
T ss_dssp             CTTCCEEEEECCSSCCE---ECTTTEESCTTCCEEEEEEETTCCEECTTS----EECCTTCCEEEEEEECCCS-CCC-CT
T ss_pred             CCCCcEEeCCCCCCcce---eCHhHcCCCcCCcEEECCCCCCeeEcCHHH----hCCCCCCCEEeCCCCCCcc-ccc-cc
Confidence            4567777777775 665   6666667777777777776 7776555444    6666677777776666653 343 44


Q ss_pred             cCCCCc---EEeCCCc-cccCcccHhhhcCCCCCc-EEECCCCCCCc
Q 038485          111 HLSSLR---SLNLFWN-RLEGSIDVKELDSLRDLE-ELDIGGNKIDK  152 (184)
Q Consensus       111 ~l~~L~---~L~l~~n-~~~~~l~~~~~~~~~~L~-~L~ls~N~l~~  152 (184)
                      .+++|+   .+++++| .++ .++...+..+++|+ .+++++|+++.
T Consensus       125 ~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~~  170 (239)
T 2xwt_C          125 KVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFTS  170 (239)
T ss_dssp             TCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCCE
T ss_pred             cccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCcc
Confidence            555555   5555555 554 44443455555555 55555555553

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.51  E-value=6.3e-14  Score=117.25  Aligned_cols=130  Identities=24%  Similarity=0.261  Sum_probs=97.6

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      +.++++|++++|.+..   +++..|..+++|++|++++|.+++..|..    |..+++|++|++++|.++ .+|..  .+
T Consensus        51 ~~~L~~L~Ls~N~i~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~l  120 (562)
T 3a79_B           51 PPRTKALSLSQNSISE---LRMPDISFLSELRVLRLSHNRIRSLDFHV----FLFNQDLEYLDVSHNRLQ-NISCC--PM  120 (562)
T ss_dssp             CTTCCEEECCSSCCCC---CCGGGTTTCTTCCEEECCSCCCCEECTTT----TTTCTTCCEEECTTSCCC-EECSC--CC
T ss_pred             CCCcCEEECCCCCccc---cChhhhccCCCccEEECCCCCCCcCCHHH----hCCCCCCCEEECCCCcCC-ccCcc--cc
Confidence            3578888888888886   77677788888888888888888777766    788888888888888888 55655  77


Q ss_pred             CCCcEEeCCCccccCccc-HhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccce
Q 038485          113 SSLRSLNLFWNRLEGSID-VKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFA  176 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~-~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~  176 (184)
                      ++|++|++++|.++ .++ ...++.+++|++|++++|.+.+.  ....+..+ +|+.+++++|.+
T Consensus       121 ~~L~~L~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L-~L~~L~L~~n~l  181 (562)
T 3a79_B          121 ASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHL-HLSCILLDLVSY  181 (562)
T ss_dssp             TTCSEEECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTS-CEEEEEEEESSC
T ss_pred             ccCCEEECCCCCcc-ccCchHhhcccCcccEEecCCCccccC--chhhhhhc-eeeEEEeecccc
Confidence            88888888888887 443 12788888888888888888762  22333344 347777777666

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.51  E-value=5.5e-14  Score=118.11  Aligned_cols=123  Identities=24%  Similarity=0.248  Sum_probs=101.9

Q ss_pred             ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCC
Q 038485           35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSS  114 (184)
Q Consensus        35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~  114 (184)
                      .++.|++++|.+..   ++.  +..+++|+.|++++|.+. ..|..    +..+++|+.|++++|.+++ +| .++.+++
T Consensus       442 ~L~~L~Ls~n~l~~---lp~--~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~  509 (567)
T 1dce_A          442 DVRVLHLAHKDLTV---LCH--LEQLLLVTHLDLSHNRLR-ALPPA----LAALRCLEVLQASDNALEN-VD-GVANLPR  509 (567)
T ss_dssp             TCSEEECTTSCCSS---CCC--GGGGTTCCEEECCSSCCC-CCCGG----GGGCTTCCEEECCSSCCCC-CG-GGTTCSS
T ss_pred             CceEEEecCCCCCC---CcC--ccccccCcEeecCccccc-ccchh----hhcCCCCCEEECCCCCCCC-Cc-ccCCCCC
Confidence            57889999999997   654  788999999999999998 55666    8999999999999999995 67 8999999


Q ss_pred             CcEEeCCCccccCcc-cHhhhcCCCCCcEEECCCCCCCccccCccc-cccccceeecc
Q 038485          115 LRSLNLFWNRLEGSI-DVKELDSLRDLEELDIGGNKIDKFVVSKGT-TNTIKNANLYK  170 (184)
Q Consensus       115 L~~L~l~~n~~~~~l-~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~-~~~l~~L~~~~  170 (184)
                      |+.|++++|.+++.. |. .+..+++|+.|++++|++++.++.... ...+.+|+.++
T Consensus       510 L~~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          510 LQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CCEEECCSSCCCSSSTTG-GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CcEEECCCCCCCCCCCcH-HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            999999999998443 65 899999999999999999988765433 22345555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.51  E-value=2.5e-14  Score=123.33  Aligned_cols=115  Identities=24%  Similarity=0.249  Sum_probs=87.2

Q ss_pred             cCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHh
Q 038485           53 NASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVK  132 (184)
Q Consensus        53 ~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~  132 (184)
                      ++..|..+..|+.|++++|.+.. .|..    +..+++|+.|++++|.++ .+|..++.+++|+.|+|++|.++ .+|. 
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~-l~~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~-  287 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFN-ISAN----IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPA-  287 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSC-CCGG----GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCS-
T ss_pred             ChhhhccCCCCcEEECCCCCCCC-CChh----hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccCh-
Confidence            34556778888888888888874 4444    568888888888888888 77888888888888888888888 7876 


Q ss_pred             hhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          133 ELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       133 ~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      .++.+++|+.|++++|.+...+..   +..+++|..+++++|.+++
T Consensus       288 ~~~~l~~L~~L~L~~N~l~~lp~~---~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          288 ELGSCFQLKYFYFFDNMVTTLPWE---FGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             SGGGGTTCSEEECCSSCCCCCCSS---TTSCTTCCCEECTTSCCCS
T ss_pred             hhcCCCCCCEEECCCCCCCccChh---hhcCCCccEEeCCCCccCC
Confidence            688888888888888888754332   5667788888888888764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.51  E-value=1e-13  Score=114.71  Aligned_cols=134  Identities=19%  Similarity=0.219  Sum_probs=75.0

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCC--cchhhhhhhhcCCCCCcEEECCCCCCCchhHHh-h
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIAS--CVENEGIERLSRLNNLKMLNLSGNSFNNSILSS-L  109 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~--~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~  109 (184)
                      ..++++|++++|.+.+   ..+..+..+++|++|++++|.+.+  ..|..    +..+++|+.|++++|.+.+.+|.. +
T Consensus       323 l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~----~~~l~~L~~L~Ls~N~l~~~l~~~~~  395 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTD---TVFENCGHLTELETLILQMNQLKELSKIAEM----TTQMKSLQQLDISQNSVSYDEKKGDC  395 (520)
T ss_dssp             CCCCCEEECCSSCCCT---TTTTTCCCCSSCCEEECCSSCCCBHHHHHHH----HTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred             CCcccEEEeECCccCh---hhhhhhccCCCCCEEEccCCccCccccchHH----HhhCCCCCEEECCCCcCCcccccchh
Confidence            4556666666666654   333444555666666666665554  22222    455555555555555555323322 2


Q ss_pred             ccC----------------------CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCcccccccccee
Q 038485          110 THL----------------------SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNAN  167 (184)
Q Consensus       110 ~~l----------------------~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~  167 (184)
                      ..+                      ++|+.|++++|+++ .+|. .+..+++|++|++++|++++.++.  .+..+++|.
T Consensus       396 ~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~-~~~~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~  471 (520)
T 2z7x_B          396 SWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPK-QVVKLEALQELNVASNQLKSVPDG--IFDRLTSLQ  471 (520)
T ss_dssp             CCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCCCCTT--TTTTCTTCC
T ss_pred             ccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccch-hhhcCCCCCEEECCCCcCCccCHH--HhccCCccc
Confidence            222                      45666666666665 5665 455677777777777777754332  345566666


Q ss_pred             ecccccccee
Q 038485          168 LYKLAGFFAI  177 (184)
Q Consensus       168 ~~~l~~~~~~  177 (184)
                      .+++++|.+.
T Consensus       472 ~L~l~~N~~~  481 (520)
T 2z7x_B          472 KIWLHTNPWD  481 (520)
T ss_dssp             EEECCSSCBC
T ss_pred             EEECcCCCCc
Confidence            7777777664

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.51  E-value=1.5e-13  Score=104.85  Aligned_cols=126  Identities=25%  Similarity=0.298  Sum_probs=106.3

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..+++.|++++|.+..   ++  .+..+++|++|++++|.+.+..+      +..+++|+.|++++|.+++ +|. +.. 
T Consensus        40 l~~L~~L~l~~n~i~~---l~--~l~~l~~L~~L~L~~N~i~~~~~------l~~l~~L~~L~L~~N~l~~-l~~-~~~-  105 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQS---LA--GMQFFTNLKELHLSHNQISDLSP------LKDLTKLEELSVNRNRLKN-LNG-IPS-  105 (263)
T ss_dssp             HTTCSEEECTTSCCCC---CT--TGGGCTTCCEEECCSSCCCCCGG------GTTCSSCCEEECCSSCCSC-CTT-CCC-
T ss_pred             cCcCcEEECcCCCccc---ch--HHhhCCCCCEEECCCCccCCChh------hccCCCCCEEECCCCccCC-cCc-ccc-
Confidence            6789999999999986   55  46789999999999999987554      7899999999999999984 443 333 


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF  179 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~  179 (184)
                      ++|+.|++++|.++ .++  .+..+++|+.|++++|++++.+    .+..+++|+.+++++|.+.+.
T Consensus       106 ~~L~~L~L~~N~l~-~~~--~l~~l~~L~~L~Ls~N~i~~~~----~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          106 ACLSRLFLDNNELR-DTD--SLIHLKNLEILSIRNNKLKSIV----MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             SSCCEEECCSSCCS-BSG--GGTTCTTCCEEECTTSCCCBCG----GGGGCTTCCEEECTTSCCCBC
T ss_pred             CcccEEEccCCccC-CCh--hhcCcccccEEECCCCcCCCCh----HHccCCCCCEEECCCCcCcch
Confidence            89999999999998 565  5899999999999999999853    356688888899999988754

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.50  E-value=1.2e-13  Score=116.90  Aligned_cols=106  Identities=26%  Similarity=0.355  Sum_probs=50.3

Q ss_pred             CCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCC
Q 038485           58 TPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSL  137 (184)
Q Consensus        58 ~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~  137 (184)
                      ..+++|+.|++++|.+... + .    +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.++ .++.  +..+
T Consensus       106 ~~l~~L~~L~Ls~N~l~~l-~-~----l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l  174 (605)
T 1m9s_A          106 KDLKKLKSLSLEHNGISDI-N-G----LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP--LAGL  174 (605)
T ss_dssp             TTCTTCCEEECTTSCCCCC-G-G----GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC-CCGG--GTTC
T ss_pred             ccCCCCCEEEecCCCCCCC-c-c----ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC-Cchh--hccC
Confidence            4444444444444444432 1 1    44445555555555554432  33444555555555555554 2221  4455


Q ss_pred             CCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          138 RDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       138 ~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      ++|+.|++++|++++. +   .+..+++|..+++++|.+..
T Consensus       175 ~~L~~L~Ls~N~i~~l-~---~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          175 TKLQNLYLSKNHISDL-R---ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             TTCCEEECCSSCCCBC-G---GGTTCTTCSEEECCSEEEEC
T ss_pred             CCCCEEECcCCCCCCC-h---HHccCCCCCEEEccCCcCcC
Confidence            5555555555555542 1   23345555555556655543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.50  E-value=6.1e-15  Score=127.21  Aligned_cols=113  Identities=27%  Similarity=0.368  Sum_probs=101.9

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ...++.|+|++|.+..   ++...+ .+++|++|++++|.++ ..|..    +..+++|+.|++++|.++ .+|..++.+
T Consensus       223 l~~L~~L~Ls~n~l~~---l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          223 DQLWHALDLSNLQIFN---ISANIF-KYDFLTRLYLNGNSLT-ELPAE----IKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             CCCCCEEECTTSCCSC---CCGGGG-GCCSCSCCBCTTSCCS-CCCGG----GGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             CCCCcEEECCCCCCCC---CChhhc-CCCCCCEEEeeCCcCc-ccChh----hhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            5778999999999986   776664 7999999999999999 56666    899999999999999999 789999999


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCc
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSK  157 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~  157 (184)
                      ++|++|++++|.++ .+|. .++.+++|+.|++++|++++.+|..
T Consensus       293 ~~L~~L~L~~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPW-EFGNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCS-STTSCTTCCCEECTTSCCCSHHHHH
T ss_pred             CCCCEEECCCCCCC-ccCh-hhhcCCCccEEeCCCCccCCCChHH
Confidence            99999999999998 8987 6999999999999999999877643

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.49  E-value=6.7e-14  Score=122.40  Aligned_cols=139  Identities=20%  Similarity=0.249  Sum_probs=110.8

Q ss_pred             CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHh--h
Q 038485           32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSS--L  109 (184)
Q Consensus        32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~--~  109 (184)
                      ...+++.|++++|....  .+++..|..+++|++|++++|.+.+..|..    |..+++|++|++++|.+.+..|..  +
T Consensus        46 ~l~~L~~LdLs~n~~~~--~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~  119 (844)
T 3j0a_A           46 FLEQLQLLELGSQYTPL--TIDKEAFRNLPNLRILDLGSSKIYFLHPDA----FQGLFHLFELRLYFCGLSDAVLKDGYF  119 (844)
T ss_dssp             SCCSCSEEEECTTCCCC--EECTTTTSSCTTCCEEECTTCCCCEECTTS----SCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred             ccccCeEEeCCCCCCcc--ccCHHHhcCCCCCCEEECCCCcCcccCHhH----ccCCcccCEeeCcCCCCCcccccCccc
Confidence            46789999999996543  377788899999999999999999888877    999999999999999998766665  8


Q ss_pred             ccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccc--cceeeccccccceee
Q 038485          110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTI--KNANLYKLAGFFAIW  178 (184)
Q Consensus       110 ~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l--~~L~~~~l~~~~~~~  178 (184)
                      ..+++|++|++++|.+++..+...++.+++|++|++++|.+.+..+.  .+..+  ++|+.++++.|.+..
T Consensus       120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~--~l~~l~~~~L~~L~L~~n~l~~  188 (844)
T 3j0a_A          120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH--ELEPLQGKTLSFFSLAANSLYS  188 (844)
T ss_dssp             SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG--GGHHHHHCSSCCCEECCSBSCC
T ss_pred             cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH--HcccccCCccceEECCCCcccc
Confidence            89999999999999998544433789999999999999999876553  22233  455555555555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.49  E-value=8.7e-14  Score=114.89  Aligned_cols=110  Identities=18%  Similarity=0.189  Sum_probs=91.3

Q ss_pred             CCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhc-cCCCCcEEeCCCccccCcccHhhhcCC
Q 038485           59 PFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT-HLSSLRSLNLFWNRLEGSIDVKELDSL  137 (184)
Q Consensus        59 ~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~~n~~~~~l~~~~~~~~  137 (184)
                      .+++|+.|++++|.+++..|..    +..+++|+.|++++|.+++..|..+. .+++|+.|++++|.++ .++  ....+
T Consensus       118 ~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~-~~~--~~~~l  190 (487)
T 3oja_A          118 RGQGKKNIYLANNKITMLRDLD----EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK--GQVVF  190 (487)
T ss_dssp             CCSSCEEEECCSSCCCSGGGBC----GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEE--CCCCC
T ss_pred             ccCCCCEEECCCCCCCCCCchh----hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc-ccc--ccccC
Confidence            3578899999999998877766    78889999999999999987787776 7899999999999998 454  34568


Q ss_pred             CCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          138 RDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       138 ~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      ++|+.|++++|.+++.++.   +..+.+|..+++++|.+++
T Consensus       191 ~~L~~L~Ls~N~l~~~~~~---~~~l~~L~~L~Ls~N~l~~  228 (487)
T 3oja_A          191 AKLKTLDLSSNKLAFMGPE---FQSAAGVTWISLRNNKLVL  228 (487)
T ss_dssp             TTCCEEECCSSCCCEECGG---GGGGTTCSEEECTTSCCCE
T ss_pred             CCCCEEECCCCCCCCCCHh---HcCCCCccEEEecCCcCcc
Confidence            8999999999999987664   4567788888889998875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.48  E-value=2.2e-13  Score=113.94  Aligned_cols=127  Identities=21%  Similarity=0.232  Sum_probs=110.2

Q ss_pred             eEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCC
Q 038485           36 VIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL  115 (184)
Q Consensus        36 l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L  115 (184)
                      .+.++++++.++.   +|...+   ++++.|++++|.+.+..+..    |..+++|+.|++++|.+++..|..|..+++|
T Consensus        33 ~~~l~ls~~~L~~---ip~~~~---~~L~~L~Ls~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  102 (562)
T 3a79_B           33 ESMVDYSNRNLTH---VPKDLP---PRTKALSLSQNSISELRMPD----ISFLSELRVLRLSHNRIRSLDFHVFLFNQDL  102 (562)
T ss_dssp             CCEEECTTSCCCS---CCTTSC---TTCCEEECCSSCCCCCCGGG----TTTCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred             CcEEEcCCCCCcc---CCCCCC---CCcCEEECCCCCccccChhh----hccCCCccEEECCCCCCCcCCHHHhCCCCCC
Confidence            3789999999997   776543   79999999999999888777    9999999999999999998778999999999


Q ss_pred             cEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485          116 RSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       116 ~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      ++|++++|.++ .+|. .  .+++|++|++++|++.+.+. ...+..+++|+.+++++|.+.
T Consensus       103 ~~L~Ls~N~l~-~lp~-~--~l~~L~~L~Ls~N~l~~l~~-p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          103 EYLDVSHNRLQ-NISC-C--PMASLRHLDLSFNDFDVLPV-CKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             CEEECTTSCCC-EECS-C--CCTTCSEEECCSSCCSBCCC-CGGGGGCTTCCEEEEECSBCC
T ss_pred             CEEECCCCcCC-ccCc-c--ccccCCEEECCCCCccccCc-hHhhcccCcccEEecCCCccc
Confidence            99999999998 8886 3  89999999999999987431 145567888888888888875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.47  E-value=4.8e-13  Score=113.18  Aligned_cols=128  Identities=27%  Similarity=0.325  Sum_probs=108.4

Q ss_pred             CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc
Q 038485           32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH  111 (184)
Q Consensus        32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~  111 (184)
                      .+.+++.|+|++|.+..   +++  +..+++|+.|++++|.+.+. + .    +..+++|+.|++++|.+.+ + +.+..
T Consensus        63 ~l~~L~~L~Ls~N~l~~---~~~--l~~l~~L~~L~Ls~N~l~~l-~-~----l~~l~~L~~L~Ls~N~l~~-l-~~l~~  129 (605)
T 1m9s_A           63 YLPNVTKLFLNGNKLTD---IKP--LTNLKNLGWLFLDENKIKDL-S-S----LKDLKKLKSLSLEHNGISD-I-NGLVH  129 (605)
T ss_dssp             GCTTCCEEECTTSCCCC---CGG--GGGCTTCCEEECCSSCCCCC-T-T----STTCTTCCEEECTTSCCCC-C-GGGGG
T ss_pred             cCCCCCEEEeeCCCCCC---Chh--hccCCCCCEEECcCCCCCCC-h-h----hccCCCCCEEEecCCCCCC-C-ccccC
Confidence            46789999999999987   554  68899999999999999863 3 3    8899999999999999985 3 46888


Q ss_pred             CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485          112 LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF  179 (184)
Q Consensus       112 l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~  179 (184)
                      +++|+.|++++|.++ .++  .+..+++|+.|++++|.+.+.+|    +..+.+|..+++++|.++..
T Consensus       130 l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          130 LPQLESLYLGNNKIT-DIT--VLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDL  190 (605)
T ss_dssp             CTTCSEEECCSSCCC-CCG--GGGSCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBC
T ss_pred             CCccCEEECCCCccC-Cch--hhcccCCCCEEECcCCcCCCchh----hccCCCCCEEECcCCCCCCC
Confidence            999999999999998 553  68999999999999999998766    55678888888888888754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.47  E-value=1.7e-13  Score=120.05  Aligned_cols=148  Identities=17%  Similarity=0.166  Sum_probs=115.7

Q ss_pred             CCCceeEEe-cCCCCceEEEecCCCCCCccc---------------cccCcc-CCCCCCCCEEeCCCCcCCCcchhhhhh
Q 038485           21 CCQWERVEC-SNTMSRVIALDLSDTYGGEYW---------------YLNASL-FTPFQQLESLDLTDNKIASCVENEGIE   83 (184)
Q Consensus        21 ~c~~~gv~c-~~~~~~l~~L~l~~n~l~~~~---------------~~~~~~-~~~l~~L~~L~ls~n~l~~~~p~~~~~   83 (184)
                      .+...++.. .....+++.|+|++|.+....               .+|... |..+++|++|++++|.+.+..|..   
T Consensus       434 ~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~---  510 (876)
T 4ecn_A          434 TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF---  510 (876)
T ss_dssp             SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG---
T ss_pred             cCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH---
Confidence            345555432 223678999999999988510               134333 338999999999999999988887   


Q ss_pred             hhcCCCCCcEEECCCCC-CCc-hhHHhhccCC-------CCcEEeCCCccccCcccH-hhhcCCCCCcEEECCCCCCCcc
Q 038485           84 RLSRLNNLKMLNLSGNS-FNN-SILSSLTHLS-------SLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNKIDKF  153 (184)
Q Consensus        84 ~~~~l~~L~~L~l~~n~-~~~-~~p~~~~~l~-------~L~~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~l~~~  153 (184)
                       +..+++|+.|++++|. +++ .+|..++.+.       +|+.|++++|.++ .+|. ..+..+++|+.|++++|.+. .
T Consensus       511 -l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~  587 (876)
T 4ecn_A          511 -LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-H  587 (876)
T ss_dssp             -GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-B
T ss_pred             -HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-c
Confidence             8999999999999998 887 7888776655       9999999999998 7874 36889999999999999998 4


Q ss_pred             ccCccccccccceeecccccccee
Q 038485          154 VVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       154 ~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      +|   .+..+++|+.+++++|.+.
T Consensus       588 lp---~~~~L~~L~~L~Ls~N~l~  608 (876)
T 4ecn_A          588 LE---AFGTNVKLTDLKLDYNQIE  608 (876)
T ss_dssp             CC---CCCTTSEESEEECCSSCCS
T ss_pred             ch---hhcCCCcceEEECcCCccc
Confidence            44   4556777777788887775

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.47  E-value=1.9e-13  Score=106.77  Aligned_cols=128  Identities=16%  Similarity=0.175  Sum_probs=97.8

Q ss_pred             ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhc-cCC
Q 038485           35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLT-HLS  113 (184)
Q Consensus        35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~-~l~  113 (184)
                      .+++|++++|.+..   ++.   ..+++|++|++++|.+.+..+..    +..+++|+.|++++|.+.+..+..+. .++
T Consensus       100 ~L~~L~l~~n~l~~---~~~---~~~~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  169 (317)
T 3o53_A          100 SIETLHAANNNISR---VSC---SRGQGKKNIYLANNKITMLRDLD----EGCRSRVQYLDLKLNEIDTVNFAELAASSD  169 (317)
T ss_dssp             TCCEEECCSSCCSE---EEE---CCCSSCEEEECCSSCCCSGGGBC----TGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred             CcCEEECCCCccCC---cCc---cccCCCCEEECCCCCCCCccchh----hhccCCCCEEECCCCCCCcccHHHHhhccC
Confidence            44444444444443   332   23577899999999998776655    78889999999999999977676664 689


Q ss_pred             CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      +|+.|++++|.++ .++.  ...+++|++|++++|++++.++.   +..+++|+.+++++|.+..
T Consensus       170 ~L~~L~L~~N~l~-~~~~--~~~l~~L~~L~Ls~N~l~~l~~~---~~~l~~L~~L~L~~N~l~~  228 (317)
T 3o53_A          170 TLEHLNLQYNFIY-DVKG--QVVFAKLKTLDLSSNKLAFMGPE---FQSAAGVTWISLRNNKLVL  228 (317)
T ss_dssp             TCCEEECTTSCCC-EEEC--CCCCTTCCEEECCSSCCCEECGG---GGGGTTCSEEECTTSCCCE
T ss_pred             cCCEEECCCCcCc-cccc--ccccccCCEEECCCCcCCcchhh---hcccCcccEEECcCCcccc
Confidence            9999999999998 5553  44688999999999999987654   5567888888999998874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.46  E-value=6.6e-13  Score=108.77  Aligned_cols=126  Identities=19%  Similarity=0.310  Sum_probs=85.6

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.+..   +++  +..+++|+.|++++|.+.+..+      +..+++|+.|++++|.+.+..|  +..+
T Consensus       264 l~~L~~L~l~~n~l~~---~~~--~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~~l  330 (466)
T 1o6v_A          264 LTKLTELKLGANQISN---ISP--LAGLTALTNLELNENQLEDISP------ISNLKNLTYLTLYFNNISDISP--VSSL  330 (466)
T ss_dssp             CTTCSEEECCSSCCCC---CGG--GTTCTTCSEEECCSSCCSCCGG------GGGCTTCSEEECCSSCCSCCGG--GGGC
T ss_pred             CCCCCEEECCCCccCc---ccc--ccCCCccCeEEcCCCcccCchh------hcCCCCCCEEECcCCcCCCchh--hccC
Confidence            4455566666665554   332  4566677777777776665433      5667777777777777775544  6677


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      ++|+.|++++|.++ .++  .+..+++|+.|++++|++++.+|    +..+++|..+++++|.++.
T Consensus       331 ~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          331 TKLQRLFFYNNKVS-DVS--SLANLTNINWLSAGHNQISDLTP----LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             TTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCBCGG----GTTCTTCCEEECCCEEEEC
T ss_pred             ccCCEeECCCCccC-Cch--hhccCCCCCEEeCCCCccCccch----hhcCCCCCEEeccCCcccC
Confidence            78888888888877 443  57788888888888888887665    3456667777777777765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.46  E-value=6.5e-14  Score=109.02  Aligned_cols=114  Identities=15%  Similarity=0.059  Sum_probs=75.5

Q ss_pred             CCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCch--hHHh--hccCCCCcEEeCCCccccCcccHh--
Q 038485           59 PFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNS--ILSS--LTHLSSLRSLNLFWNRLEGSIDVK--  132 (184)
Q Consensus        59 ~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~--~p~~--~~~l~~L~~L~l~~n~~~~~l~~~--  132 (184)
                      .+++|++|++++|.+.+..+..    +..+++|++|++++|.+.+.  .+..  ++.+++|++|++++|.++ .++..  
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~  217 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQ----VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCA  217 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTS----CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHH----hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHH
Confidence            4566677777777666655554    66777777788777776532  2211  256677788888888776 44331  


Q ss_pred             -hhcCCCCCcEEECCCCCCCcccc-Cccccccccceeecccccccee
Q 038485          133 -ELDSLRDLEELDIGGNKIDKFVV-SKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       133 -~~~~~~~L~~L~ls~N~l~~~~~-~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                       .+..+++|++|++++|++.+..| ....+..+++|+.+++++|.++
T Consensus       218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred             HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence             24567888888888888888743 3344444467778888888876

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.44  E-value=3.7e-13  Score=95.62  Aligned_cols=113  Identities=26%  Similarity=0.299  Sum_probs=96.9

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCch-hHHhhcc
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNS-ILSSLTH  111 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~-~p~~~~~  111 (184)
                      ..++++|++++|.+..   +  ..+..+++|++|++++|.+.+..|..    +..+++|+.|++++|.+++. .+..+..
T Consensus        48 l~~L~~L~l~~n~l~~---~--~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~l~~  118 (168)
T 2ell_A           48 FVNLEFLSLINVGLIS---V--SNLPKLPKLKKLELSENRIFGGLDML----AEKLPNLTHLNLSGNKLKDISTLEPLKK  118 (168)
T ss_dssp             GGGCCEEEEESSCCCC---C--SSCCCCSSCCEEEEESCCCCSCCCHH----HHHCTTCCEEECBSSSCCSSGGGGGGSS
T ss_pred             CCCCCEEeCcCCCCCC---h--hhhccCCCCCEEECcCCcCchHHHHH----HhhCCCCCEEeccCCccCcchhHHHHhc
Confidence            5789999999999987   4  56788999999999999999876665    66799999999999999853 2378899


Q ss_pred             CCCCcEEeCCCccccCcccH---hhhcCCCCCcEEECCCCCCCcccc
Q 038485          112 LSSLRSLNLFWNRLEGSIDV---KELDSLRDLEELDIGGNKIDKFVV  155 (184)
Q Consensus       112 l~~L~~L~l~~n~~~~~l~~---~~~~~~~~L~~L~ls~N~l~~~~~  155 (184)
                      +++|+.|++++|.++ .++.   ..+..+++|+.|++++|.+...+.
T Consensus       119 l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          119 LECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             CSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             CCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            999999999999998 5553   478899999999999999876543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=5.5e-13  Score=95.28  Aligned_cols=104  Identities=24%  Similarity=0.353  Sum_probs=89.9

Q ss_pred             CCCCCCceeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCC
Q 038485           18 ATDCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL   88 (184)
Q Consensus        18 ~~~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l   88 (184)
                      ..+.|+|..+.|...         ...++.|++++|.+..   +++..|..+++|++|++++|.+++..+..    |..+
T Consensus         5 ~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~---~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~----f~~l   77 (170)
T 3g39_A            5 SQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITK---LEPGVFDRLTQLTRLDLDNNQLTVLPAGV----FDKL   77 (170)
T ss_dssp             -CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTC
T ss_pred             CcCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCc---cChhhhcCcccCCEEECCCCCcCccChhh----ccCC
Confidence            456678999998652         4678999999999998   88888899999999999999999877766    7899


Q ss_pred             CCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCc
Q 038485           89 NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGS  128 (184)
Q Consensus        89 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~  128 (184)
                      ++|+.|++++|.++...+..+..+++|+.|++++|.+...
T Consensus        78 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           78 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999999999999966666799999999999999998743

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.42  E-value=8.2e-13  Score=103.88  Aligned_cols=110  Identities=22%  Similarity=0.308  Sum_probs=75.6

Q ss_pred             CCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcC
Q 038485           57 FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDS  136 (184)
Q Consensus        57 ~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~  136 (184)
                      +..+++|++|++++|.+....+      +..+++|+++++++|.+...  +.+..+++|+.+++++|.++ .++  .+..
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~-~~~--~~~~  285 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDLSP------LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS-DIS--VLNN  285 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-CCG--GGGG
T ss_pred             hhcCCcCCEEEccCCccCCCcc------hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccC-CCh--hhcC
Confidence            4556677777777777665433      56777777777777777642  45667777888888877776 453  4777


Q ss_pred             CCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485          137 LRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF  179 (184)
Q Consensus       137 ~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~  179 (184)
                      +++|+.|++++|++.+.++  ..+..+++|+.+++++|.++..
T Consensus       286 l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          286 LSQLNSLFLNNNQLGNEDM--EVIGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             CTTCSEEECCSSCCCGGGH--HHHHTCTTCSEEECCSSSCCCC
T ss_pred             CCCCCEEECcCCcCCCcCh--hHhhccccCCEEEccCCccccc
Confidence            7788888888888776555  4445677777777788877654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.42  E-value=1.1e-12  Score=91.40  Aligned_cols=105  Identities=25%  Similarity=0.341  Sum_probs=90.6

Q ss_pred             CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCch-hHHhhc
Q 038485           32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNS-ILSSLT  110 (184)
Q Consensus        32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~-~p~~~~  110 (184)
                      ...+++.|++++|.+..   +  ..+..+++|++|++++|.+.+..|..    +..+++|+.+++++|.+++. .+..+.
T Consensus        40 ~l~~L~~L~l~~n~l~~---~--~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~ls~N~i~~~~~~~~~~  110 (149)
T 2je0_A           40 EFEELEFLSTINVGLTS---I--ANLPKLNKLKKLELSDNRVSGGLEVL----AEKCPNLTHLNLSGNKIKDLSTIEPLK  110 (149)
T ss_dssp             TCTTCCEEECTTSCCCC---C--TTCCCCTTCCEEECCSSCCCSCTHHH----HHHCTTCCEEECTTSCCCSHHHHGGGG
T ss_pred             hcCCCcEEECcCCCCCC---c--hhhhcCCCCCEEECCCCcccchHHHH----hhhCCCCCEEECCCCcCCChHHHHHHh
Confidence            36789999999999987   4  56788999999999999999877765    67799999999999999963 358899


Q ss_pred             cCCCCcEEeCCCccccCcccH---hhhcCCCCCcEEECC
Q 038485          111 HLSSLRSLNLFWNRLEGSIDV---KELDSLRDLEELDIG  146 (184)
Q Consensus       111 ~l~~L~~L~l~~n~~~~~l~~---~~~~~~~~L~~L~ls  146 (184)
                      .+++|+.+++++|.++ .++.   ..+..+++|+.|+++
T Consensus       111 ~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          111 KLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             GCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred             hCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence            9999999999999998 4543   468899999999876

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.41  E-value=2.9e-13  Score=107.14  Aligned_cols=126  Identities=17%  Similarity=0.177  Sum_probs=94.1

Q ss_pred             CCCCceeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCC
Q 038485           20 DCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNN   90 (184)
Q Consensus        20 ~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~   90 (184)
                      +.|++..|.|...         +.++++|+|++|.++.   ++...|.++++|++|++++|.+.+..|..   +|..+++
T Consensus         7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~---i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~L~~   80 (350)
T 4ay9_X            7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV---IQKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLPK   80 (350)
T ss_dssp             SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSE---ECTTSSTTCTTCCEEEEECCTTCCEECTT---SBCSCTT
T ss_pred             cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCC---cCHHHHcCCCCCCEEECcCCCCCCccChh---Hhhcchh
Confidence            5688999999651         3578999999999997   88889999999999999999987665542   1778888


Q ss_pred             CcE-EECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCC-CCCCc
Q 038485           91 LKM-LNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGG-NKIDK  152 (184)
Q Consensus        91 L~~-L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~-N~l~~  152 (184)
                      +.. +.+..|.+....|..|..+++|+++++++|.++ .++...+.....+..+++.. +.+..
T Consensus        81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~  143 (350)
T 4ay9_X           81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHT  143 (350)
T ss_dssp             CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCE
T ss_pred             hhhhhcccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhcccccccc
Confidence            765 556678888666788889999999999999887 44432344444455555533 33443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.40  E-value=2.5e-12  Score=105.35  Aligned_cols=107  Identities=23%  Similarity=0.327  Sum_probs=58.0

Q ss_pred             CCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCC
Q 038485           58 TPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSL  137 (184)
Q Consensus        58 ~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~  137 (184)
                      ..+++|+.|++++|.+.+..+      +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+++ ++.  +..+
T Consensus       262 ~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~--~~~l  330 (466)
T 1o6v_A          262 SGLTKLTELKLGANQISNISP------LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD-ISP--VSSL  330 (466)
T ss_dssp             TTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC-CGG--GGGC
T ss_pred             hcCCCCCEEECCCCccCcccc------ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC-chh--hccC
Confidence            444555555555555543322      4455555555555555553222  4555666666666666652 221  4556


Q ss_pred             CCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485          138 RDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF  179 (184)
Q Consensus       138 ~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~  179 (184)
                      ++|+.|++++|++.+.    ..+..+++|+.+++++|.+.+.
T Consensus       331 ~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~  368 (466)
T 1o6v_A          331 TKLQRLFFYNNKVSDV----SSLANLTNINWLSAGHNQISDL  368 (466)
T ss_dssp             TTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSSCCCBC
T ss_pred             ccCCEeECCCCccCCc----hhhccCCCCCEEeCCCCccCcc
Confidence            6666666666666553    2334566666667777766544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=2e-12  Score=92.72  Aligned_cols=105  Identities=21%  Similarity=0.237  Sum_probs=88.9

Q ss_pred             CCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcE
Q 038485           63 LESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEE  142 (184)
Q Consensus        63 L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~  142 (184)
                      -+.+++++|.+.. .|..    +  .+.|+.|++++|.+++..|..+..+++|+.|++++|+++ .++...+..+++|+.
T Consensus        14 ~~~l~~~~n~l~~-iP~~----~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~   85 (174)
T 2r9u_A           14 QTLVNCQNIRLAS-VPAG----I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQ   85 (174)
T ss_dssp             SSEEECCSSCCSS-CCSC----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CcEEEeCCCCCCc-cCCC----c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhE
Confidence            4789999999975 4543    3  388999999999999777888999999999999999998 677656789999999


Q ss_pred             EECCCCCCCccccCccccccccceeecccccccee
Q 038485          143 LDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       143 L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      |++++|++++.++  ..+..+++|..+++++|.+.
T Consensus        86 L~L~~N~l~~l~~--~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           86 LDLNDNHLKSIPR--GAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             EECCSSCCCCCCT--TTTTTCTTCSEEECCSSCBC
T ss_pred             EECCCCccceeCH--HHhccccCCCEEEeCCCCcc
Confidence            9999999998765  44567888888899998764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.37  E-value=4e-12  Score=100.14  Aligned_cols=110  Identities=21%  Similarity=0.280  Sum_probs=88.7

Q ss_pred             CCCceeEEecCCCCceEEEecCCC-CCCccccccCccCCCCCCCCEEeCCC-CcCCCcchhhhhhhhcCCCCCcEEECCC
Q 038485           21 CCQWERVECSNTMSRVIALDLSDT-YGGEYWYLNASLFTPFQQLESLDLTD-NKIASCVENEGIERLSRLNNLKMLNLSG   98 (184)
Q Consensus        21 ~c~~~gv~c~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~~l~~L~~L~ls~-n~l~~~~p~~~~~~~~~l~~L~~L~l~~   98 (184)
                      .|.|..+.|.            ++ .+..   +|.  +..+.+|+.|++++ |.+.+..+..    |..+++|+.|++++
T Consensus         7 ~C~~~~v~~~------------~~n~l~~---ip~--l~~~~~L~~L~l~~~n~l~~~~~~~----~~~l~~L~~L~l~~   65 (347)
T 2ifg_A            7 PHGSSGLRCT------------RDGALDS---LHH--LPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVK   65 (347)
T ss_dssp             CSSSSCEECC------------SSCCCTT---TTT--SCSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECCS
T ss_pred             cccCCEEEcC------------CCCCCCc---cCC--CCCCCCeeEEEccCCCCCCCcChhH----hccccCCCEEECCC
Confidence            5777777665            33 5554   555  67888999999996 9998877776    88999999999999


Q ss_pred             CCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcc
Q 038485           99 NSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF  153 (184)
Q Consensus        99 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~  153 (184)
                      |.+++..|..|..+++|+.|+|++|+++ .+|...+..++ |+.|++.+|++...
T Consensus        66 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           66 SGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             SCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccCC-ceEEEeeCCCccCC
Confidence            9999877888899999999999999998 67664555555 99999999998753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.35  E-value=1.7e-12  Score=93.00  Aligned_cols=109  Identities=24%  Similarity=0.255  Sum_probs=93.2

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHH--hhcc
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILS--SLTH  111 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~--~~~~  111 (184)
                      ++++.|++++|.+..   +  ..+..+++|++|++++|.+.+..+..    +..+++|+.|++++|.+. ..|.  .+..
T Consensus        42 ~~L~~L~Ls~N~l~~---~--~~l~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~i~-~~~~~~~l~~  111 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRK---L--DGFPLLRRLKTLLVNNNRICRIGEGL----DQALPDLTELILTNNSLV-ELGDLDPLAS  111 (176)
T ss_dssp             TCCSEEECCSSCCCE---E--CCCCCCSSCCEEECCSSCCCEECSCH----HHHCTTCCEEECCSCCCC-CGGGGGGGGG
T ss_pred             CCCCEEECCCCCCCc---c--cccccCCCCCEEECCCCcccccCcch----hhcCCCCCEEECCCCcCC-cchhhHhhhc
Confidence            489999999999997   5  45788999999999999999765554    588999999999999997 5565  7889


Q ss_pred             CCCCcEEeCCCccccCcccHh---hhcCCCCCcEEECCCCCCCcc
Q 038485          112 LSSLRSLNLFWNRLEGSIDVK---ELDSLRDLEELDIGGNKIDKF  153 (184)
Q Consensus       112 l~~L~~L~l~~n~~~~~l~~~---~~~~~~~L~~L~ls~N~l~~~  153 (184)
                      +++|+.+++++|.++ .++..   .+..+++|+.++++.|.....
T Consensus       112 l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A          112 LKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             CTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             CCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence            999999999999998 67652   388999999999999887543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.32  E-value=1.7e-12  Score=109.00  Aligned_cols=116  Identities=22%  Similarity=0.222  Sum_probs=68.8

Q ss_pred             cCCCCCCCCCCC-----CceeE-EecCCCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhh
Q 038485           11 DRKNGEGATDCC-----QWERV-ECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIER   84 (184)
Q Consensus        11 ~~~~~~~~~~~c-----~~~gv-~c~~~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~   84 (184)
                      +..|.. +...|     .|.++ .|.  ..+++.|++++|.+..   ++...+   ++|++|++++|.++. .| .    
T Consensus        33 l~~W~~-~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~---lp~~l~---~~L~~L~Ls~N~l~~-ip-~----   97 (571)
T 3cvr_A           33 WDKWEK-QALPGENRNEAVSLLKECL--INQFSELQLNRLNLSS---LPDNLP---PQITVLEITQNALIS-LP-E----   97 (571)
T ss_dssp             HHHHHT-TCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSC---CCSCCC---TTCSEEECCSSCCSC-CC-C----
T ss_pred             HHHHhc-cCCccccccchhhhccccc--cCCccEEEeCCCCCCc---cCHhHc---CCCCEEECcCCCCcc-cc-c----
Confidence            345643 56667     68888 675  3578888888888776   555442   567777777777763 33 2    


Q ss_pred             hcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCc
Q 038485           85 LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK  152 (184)
Q Consensus        85 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~  152 (184)
                        .+++|+.|++++|.+++ +|. +..  +|+.|++++|.++ .+|.    .+++|+.|++++|.+++
T Consensus        98 --~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~  154 (571)
T 3cvr_A           98 --LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT-MLPE----LPALLEYINADNNQLTM  154 (571)
T ss_dssp             --CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC
T ss_pred             --ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC-CCCC----cCccccEEeCCCCccCc
Confidence              24566666666666663 444 332  5566666666555 3442    34455555555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.29  E-value=2.1e-12  Score=102.54  Aligned_cols=140  Identities=21%  Similarity=0.238  Sum_probs=69.2

Q ss_pred             ceEEEecCCCCCCccccccCccCCC-----CCCCCEEeCCCCcCCCcchhhhhhhhcCC-CCCcEEECCCCCCCchhHHh
Q 038485           35 RVIALDLSDTYGGEYWYLNASLFTP-----FQQLESLDLTDNKIASCVENEGIERLSRL-NNLKMLNLSGNSFNNSILSS  108 (184)
Q Consensus        35 ~l~~L~l~~n~l~~~~~~~~~~~~~-----l~~L~~L~ls~n~l~~~~p~~~~~~~~~l-~~L~~L~l~~n~~~~~~p~~  108 (184)
                      ++++|++++|.+..   .....+..     .++|++|++++|.+.+..+......+..+ ++|+.|++++|.+++..+..
T Consensus        52 ~L~~L~Ls~N~l~~---~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  128 (362)
T 3goz_A           52 SVTSLNLSGNSLGF---KNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE  128 (362)
T ss_dssp             TCCEEECCSSCGGG---SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             ceeEEECcCCCCCH---HHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH
Confidence            55566666665543   22211222     15566666666666555544433334444 56666666666665444433


Q ss_pred             hc----c-CCCCcEEeCCCccccCc----ccHhhhcCCC-CCcEEECCCCCCCccccCc--cccccc-cceeeccccccc
Q 038485          109 LT----H-LSSLRSLNLFWNRLEGS----IDVKELDSLR-DLEELDIGGNKIDKFVVSK--GTTNTI-KNANLYKLAGFF  175 (184)
Q Consensus       109 ~~----~-l~~L~~L~l~~n~~~~~----l~~~~~~~~~-~L~~L~ls~N~l~~~~~~~--~~~~~l-~~L~~~~l~~~~  175 (184)
                      +.    . ..+|++|++++|.+++.    ++. .+...+ +|++|++++|++.+..+..  ..+... ++|+.+++++|.
T Consensus       129 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  207 (362)
T 3goz_A          129 FKQAFSNLPASITSLNLRGNDLGIKSSDELIQ-ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL  207 (362)
T ss_dssp             HHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHHHHhCCCceeEEEccCCcCCHHHHHHHHH-HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence            32    2 24566666666666521    111 233333 6666666666665533211  112223 466666667776


Q ss_pred             eee
Q 038485          176 AIW  178 (184)
Q Consensus       176 ~~~  178 (184)
                      +..
T Consensus       208 i~~  210 (362)
T 3goz_A          208 LGL  210 (362)
T ss_dssp             GGG
T ss_pred             CCh
Confidence            654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.29  E-value=1e-11  Score=104.37  Aligned_cols=107  Identities=22%  Similarity=0.249  Sum_probs=94.4

Q ss_pred             CCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCc
Q 038485           62 QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLE  141 (184)
Q Consensus        62 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~  141 (184)
                      .|+.|++++|.+++. |.     +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.++ .+|  .++.+++|+
T Consensus       442 ~L~~L~Ls~n~l~~l-p~-----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp--~l~~l~~L~  511 (567)
T 1dce_A          442 DVRVLHLAHKDLTVL-CH-----LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD--GVANLPRLQ  511 (567)
T ss_dssp             TCSEEECTTSCCSSC-CC-----GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG--GGTTCSSCC
T ss_pred             CceEEEecCCCCCCC-cC-----ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CCc--ccCCCCCCc
Confidence            588999999999874 43     789999999999999999 78999999999999999999999 577  699999999


Q ss_pred             EEECCCCCCCccc-cCccccccccceeeccccccceeeEE
Q 038485          142 ELDIGGNKIDKFV-VSKGTTNTIKNANLYKLAGFFAIWFI  180 (184)
Q Consensus       142 ~L~ls~N~l~~~~-~~~~~~~~l~~L~~~~l~~~~~~~~~  180 (184)
                      .|++++|++++.+ |  ..+..+++|..+++++|.+++..
T Consensus       512 ~L~Ls~N~l~~~~~p--~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          512 ELLLCNNRLQQSAAI--QPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             EEECCSSCCCSSSTT--GGGGGCTTCCEEECTTSGGGGSS
T ss_pred             EEECCCCCCCCCCCc--HHHhcCCCCCEEEecCCcCCCCc
Confidence            9999999999875 5  44567888999999999987653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.29  E-value=2.1e-11  Score=99.92  Aligned_cols=77  Identities=21%  Similarity=0.238  Sum_probs=32.4

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  113 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~  113 (184)
                      .++++|++++|.+..   ++   +..+++|++|++++|.+.+. +      +..+++|++|++++|.+++ +|  ++.++
T Consensus        64 ~~L~~L~Ls~n~l~~---~~---~~~l~~L~~L~Ls~N~l~~~-~------~~~l~~L~~L~L~~N~l~~-l~--~~~l~  127 (457)
T 3bz5_A           64 TGLTKLICTSNNITT---LD---LSQNTNLTYLACDSNKLTNL-D------VTPLTKLTYLNCDTNKLTK-LD--VSQNP  127 (457)
T ss_dssp             TTCSEEECCSSCCSC---CC---CTTCTTCSEEECCSSCCSCC-C------CTTCTTCCEEECCSSCCSC-CC--CTTCT
T ss_pred             CCCCEEEccCCcCCe---Ec---cccCCCCCEEECcCCCCcee-e------cCCCCcCCEEECCCCcCCe-ec--CCCCC
Confidence            344444444444443   21   33444444444444444432 1      3344444444444444442 11  33444


Q ss_pred             CCcEEeCCCcccc
Q 038485          114 SLRSLNLFWNRLE  126 (184)
Q Consensus       114 ~L~~L~l~~n~~~  126 (184)
                      +|+.|++++|.++
T Consensus       128 ~L~~L~l~~N~l~  140 (457)
T 3bz5_A          128 LLTYLNCARNTLT  140 (457)
T ss_dssp             TCCEEECTTSCCS
T ss_pred             cCCEEECCCCccc
Confidence            4444444444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.28  E-value=4.4e-12  Score=99.22  Aligned_cols=110  Identities=20%  Similarity=0.249  Sum_probs=50.1

Q ss_pred             CCCCCCCEEeCCCC-cCCCc-chhhhhhhhcCCCCCcEEECCCC-CCCch-hHHhhccCC-CCcEEeCCCcc--cc-Ccc
Q 038485           58 TPFQQLESLDLTDN-KIASC-VENEGIERLSRLNNLKMLNLSGN-SFNNS-ILSSLTHLS-SLRSLNLFWNR--LE-GSI  129 (184)
Q Consensus        58 ~~l~~L~~L~ls~n-~l~~~-~p~~~~~~~~~l~~L~~L~l~~n-~~~~~-~p~~~~~l~-~L~~L~l~~n~--~~-~~l  129 (184)
                      ..+++|++|++++| .+++. .+..    +..+++|+.|++++| .+++. .+..+..++ +|++|++++|.  ++ +.+
T Consensus       139 ~~~~~L~~L~L~~~~~l~~~~l~~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l  214 (336)
T 2ast_B          139 AKNSNLVRLNLSGCSGFSEFALQTL----LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL  214 (336)
T ss_dssp             TTCTTCSEEECTTCBSCCHHHHHHH----HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH
T ss_pred             hcCCCCCEEECCCCCCCCHHHHHHH----HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHH
Confidence            34455555555555 33321 1221    344555555555555 55432 344444555 55555555552  22 123


Q ss_pred             cHhhhcCCCCCcEEECCCCC-CCccccCccccccccceeecccccc
Q 038485          130 DVKELDSLRDLEELDIGGNK-IDKFVVSKGTTNTIKNANLYKLAGF  174 (184)
Q Consensus       130 ~~~~~~~~~~L~~L~ls~N~-l~~~~~~~~~~~~l~~L~~~~l~~~  174 (184)
                      +. .+..+++|++|++++|. +++..+  ..+..+++|+.+++++|
T Consensus       215 ~~-~~~~~~~L~~L~l~~~~~l~~~~~--~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          215 ST-LVRRCPNLVHLDLSDSVMLKNDCF--QEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             HH-HHHHCTTCSEEECTTCTTCCGGGG--GGGGGCTTCCEEECTTC
T ss_pred             HH-HHhhCCCCCEEeCCCCCcCCHHHH--HHHhCCCCCCEeeCCCC
Confidence            32 34455566666666655 443222  12233444555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.27  E-value=3e-12  Score=102.32  Aligned_cols=142  Identities=16%  Similarity=0.124  Sum_probs=77.4

Q ss_pred             CceEEEecCCCCCCccccccC--ccCCCCCCCCEEeCCCCcCCCcchhhhhh-hhcCCCCCcEEECCCCCCC----chhH
Q 038485           34 SRVIALDLSDTYGGEYWYLNA--SLFTPFQQLESLDLTDNKIASCVENEGIE-RLSRLNNLKMLNLSGNSFN----NSIL  106 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~--~~~~~l~~L~~L~ls~n~l~~~~p~~~~~-~~~~l~~L~~L~l~~n~~~----~~~p  106 (184)
                      +++++|++++|.+.... ++.  ..+..+++|++|++++|.+....-....+ .+..+++|+.|++++|.++    ..+|
T Consensus       159 ~~L~~L~L~~n~l~~~~-~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~  237 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGS-MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  237 (386)
T ss_dssp             CCCCEEECCSSCCTGGG-HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHH-HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence            45555555555554200 110  12344566667777766665211111111 2566677777777777764    3456


Q ss_pred             HhhccCCCCcEEeCCCccccCc----ccHhhh--cCCCCCcEEECCCCCCCcc----ccCccccccccceeeccccccce
Q 038485          107 SSLTHLSSLRSLNLFWNRLEGS----IDVKEL--DSLRDLEELDIGGNKIDKF----VVSKGTTNTIKNANLYKLAGFFA  176 (184)
Q Consensus       107 ~~~~~l~~L~~L~l~~n~~~~~----l~~~~~--~~~~~L~~L~ls~N~l~~~----~~~~~~~~~l~~L~~~~l~~~~~  176 (184)
                      ..+..+++|+.|++++|.+++.    ++. .+  +.+++|++|++++|.+.+.    ++. .....+++|..+++++|.+
T Consensus       238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~-~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          238 IALKSWPNLRELGLNDCLLSARGAAAVVD-AFSKLENIGLQTLRLQYNEIELDAVRTLKT-VIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHH-HHHTCSSCCCCEEECCSSCCBHHHHHHHHH-HHHHHCTTCCEEECTTSBS
T ss_pred             HHHccCCCcCEEECCCCCCchhhHHHHHH-HHhhccCCCeEEEECcCCcCCHHHHHHHHH-HHHhcCCCceEEEccCCcC
Confidence            6666777777777777777532    222 34  2367777777777777661    221 1112356666667777766


Q ss_pred             ee
Q 038485          177 IW  178 (184)
Q Consensus       177 ~~  178 (184)
                      ++
T Consensus       316 ~~  317 (386)
T 2ca6_A          316 SE  317 (386)
T ss_dssp             CT
T ss_pred             Cc
Confidence            53

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.27  E-value=5.8e-11  Score=97.27  Aligned_cols=40  Identities=15%  Similarity=0.101  Sum_probs=18.1

Q ss_pred             hcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          134 LDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       134 ~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      +..+++|+.|++++|++++. |    +..+++|+.+++++|.+++
T Consensus       208 l~~l~~L~~L~Ls~N~l~~i-p----~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          208 LNQNIQLTFLDCSSNKLTEI-D----VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCC-C----CTTCTTCSEEECCSSCCSC
T ss_pred             cccCCCCCEEECcCCccccc-C----ccccCCCCEEEeeCCcCCC
Confidence            33444455555555555442 1    2234444445555555443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.27  E-value=2.3e-12  Score=102.27  Aligned_cols=143  Identities=22%  Similarity=0.181  Sum_probs=84.1

Q ss_pred             CceEEEecCCCCCCccccccCc----cCCCC-CCCCEEeCCCCcCCCcchhhhhhhhcCC-CCCcEEECCCCCCCchh--
Q 038485           34 SRVIALDLSDTYGGEYWYLNAS----LFTPF-QQLESLDLTDNKIASCVENEGIERLSRL-NNLKMLNLSGNSFNNSI--  105 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~----~~~~l-~~L~~L~ls~n~l~~~~p~~~~~~~~~l-~~L~~L~l~~n~~~~~~--  105 (184)
                      .++++|++++|.+..   ....    .+..+ ++|++|++++|.+....+.....++..+ ++|++|++++|.+++..  
T Consensus        80 ~~L~~L~Ls~n~l~~---~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  156 (362)
T 3goz_A           80 ANVTSLNLSGNFLSY---KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD  156 (362)
T ss_dssp             TTCCEEECCSSCGGG---SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred             CCccEEECcCCcCCh---HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence            567778888777764   2222    12333 6777888888777766655544444443 57778888877776433  


Q ss_pred             --HHhhccCC-CCcEEeCCCccccCcccH---hhhcCC-CCCcEEECCCCCCCccccC--cccccc-ccceeeccccccc
Q 038485          106 --LSSLTHLS-SLRSLNLFWNRLEGSIDV---KELDSL-RDLEELDIGGNKIDKFVVS--KGTTNT-IKNANLYKLAGFF  175 (184)
Q Consensus       106 --p~~~~~l~-~L~~L~l~~n~~~~~l~~---~~~~~~-~~L~~L~ls~N~l~~~~~~--~~~~~~-l~~L~~~~l~~~~  175 (184)
                        +..+..++ +|+.|++++|.+++..+.   ..+..+ ++|++|++++|.+.+....  ...+.. .++|+.+++++|.
T Consensus       157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  236 (362)
T 3goz_A          157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC  236 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred             HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence              33444444 777888887777633321   123344 4778888887777652211  012222 2466777777777


Q ss_pred             eeeE
Q 038485          176 AIWF  179 (184)
Q Consensus       176 ~~~~  179 (184)
                      +.+.
T Consensus       237 l~~~  240 (362)
T 3goz_A          237 LHGP  240 (362)
T ss_dssp             CCCC
T ss_pred             CCcH
Confidence            7543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.25  E-value=7.2e-12  Score=97.99  Aligned_cols=110  Identities=23%  Similarity=0.283  Sum_probs=59.8

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCc-chhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASC-VENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++.|++++|.+..   ..+. +..+++|++|++++|.+... .+..    +..+++|+.|++++|.+.+..+..+..+
T Consensus        70 ~~l~~L~l~~n~l~~---~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~----~~~~~~L~~L~L~~~~l~~~~~~~l~~~  141 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQ---PLAE-HFSPFRVQHMDLSNSVIEVSTLHGI----LSQCSKLQNLSLEGLRLSDPIVNTLAKN  141 (336)
T ss_dssp             TTCSEEECTTCEECS---CCCS-CCCCBCCCEEECTTCEECHHHHHHH----HTTBCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred             ccceEEEcCCccccc---cchh-hccCCCCCEEEccCCCcCHHHHHHH----HhhCCCCCEEeCcCcccCHHHHHHHhcC
Confidence            445555555555543   2222 23456666666666665433 3333    5556666666666666665555556666


Q ss_pred             CCCcEEeCCCc-cccCc-ccHhhhcCCCCCcEEECCCC-CCCc
Q 038485          113 SSLRSLNLFWN-RLEGS-IDVKELDSLRDLEELDIGGN-KIDK  152 (184)
Q Consensus       113 ~~L~~L~l~~n-~~~~~-l~~~~~~~~~~L~~L~ls~N-~l~~  152 (184)
                      ++|++|++++| .+++. ++. .+..+++|++|++++| .+++
T Consensus       142 ~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~  183 (336)
T 2ast_B          142 SNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTE  183 (336)
T ss_dssp             TTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCH
T ss_pred             CCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcCh
Confidence            66666666666 44421 322 3555566666666666 5553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.24  E-value=2.9e-12  Score=102.42  Aligned_cols=117  Identities=15%  Similarity=0.122  Sum_probs=58.3

Q ss_pred             CCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCch-----hHHhhccCCCCcEEeCCCcccc----CcccH
Q 038485           61 QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNS-----ILSSLTHLSSLRSLNLFWNRLE----GSIDV  131 (184)
Q Consensus        61 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~-----~p~~~~~l~~L~~L~l~~n~~~----~~l~~  131 (184)
                      ++|++|++++|.+...........+..+++|+.|++++|.+...     .+..+..+++|+.|++++|.++    ..++.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            45555555555544221111112244555666666666665521     1224555666666666666663    23444


Q ss_pred             hhhcCCCCCcEEECCCCCCCccccC--cccc--ccccceeeccccccceee
Q 038485          132 KELDSLRDLEELDIGGNKIDKFVVS--KGTT--NTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       132 ~~~~~~~~L~~L~ls~N~l~~~~~~--~~~~--~~l~~L~~~~l~~~~~~~  178 (184)
                       .+..+++|++|++++|.+.+....  ...+  ..+++|..+++++|.++.
T Consensus       239 -~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          239 -ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             -HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             -HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence             455666666666666666553110  0111  125556666666666653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.22  E-value=7.4e-14  Score=102.01  Aligned_cols=111  Identities=23%  Similarity=0.274  Sum_probs=90.4

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.+..   ++  .+..+++|++|++++|.+.. .|..    +..+++|+.|++++|.+++ +| .+..+
T Consensus        47 l~~L~~L~ls~n~l~~---l~--~~~~l~~L~~L~l~~n~l~~-l~~~----~~~~~~L~~L~L~~N~l~~-l~-~~~~l  114 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK---IS--SLSGMENLRILSLGRNLIKK-IENL----DAVADTLEELWISYNQIAS-LS-GIEKL  114 (198)
T ss_dssp             TTTCSEEECSEEEESC---CC--CHHHHTTCCEEEEEEEEECS-CSSH----HHHHHHCSEEEEEEEECCC-HH-HHHHH
T ss_pred             CCCCCEEECCCCCCcc---cc--ccccCCCCCEEECCCCCccc-ccch----hhcCCcCCEEECcCCcCCc-CC-ccccC
Confidence            5688999999998886   55  56788999999999999884 4444    5667889999999999985 45 67888


Q ss_pred             CCCcEEeCCCccccCcccH-hhhcCCCCCcEEECCCCCCCccccC
Q 038485          113 SSLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNKIDKFVVS  156 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~l~~~~~~  156 (184)
                      ++|+.|++++|.++ .++. ..+..+++|+++++++|++.+.+|.
T Consensus       115 ~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          115 VNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            99999999999998 4443 3688899999999999999877654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.19  E-value=7.4e-11  Score=99.14  Aligned_cols=79  Identities=18%  Similarity=0.116  Sum_probs=45.2

Q ss_pred             CCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCC-------cEEECCCCCCCccccCcccc
Q 038485           88 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDL-------EELDIGGNKIDKFVVSKGTT  160 (184)
Q Consensus        88 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L-------~~L~ls~N~l~~~~~~~~~~  160 (184)
                      +++|+.|++++|.+++ +|. +.  ++|+.|++++|.++ .+|.  +..  +|       +.|++++|+++..+...   
T Consensus       159 l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l---  226 (571)
T 3cvr_A          159 PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA--VPV--RNHHSEETEIFFRCRENRITHIPENI---  226 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC--CC----------CCEEEECCSSCCCCCCGGG---
T ss_pred             CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh--HHH--hhhcccccceEEecCCCcceecCHHH---
Confidence            3456666666666653 444 33  56666666666666 5553  222  45       77777777776543322   


Q ss_pred             ccccceeeccccccceee
Q 038485          161 NTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       161 ~~l~~L~~~~l~~~~~~~  178 (184)
                      ..+++|..+++++|.+++
T Consensus       227 ~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          227 LSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             GGSCTTEEEECCSSSCCH
T ss_pred             hcCCCCCEEEeeCCcCCC
Confidence            236666777777777754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.15  E-value=1.7e-10  Score=90.75  Aligned_cols=104  Identities=18%  Similarity=0.215  Sum_probs=84.2

Q ss_pred             CEEeCCCC-cCCCcchhhhhhhhcCCCCCcEEECCC-CCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCc
Q 038485           64 ESLDLTDN-KIASCVENEGIERLSRLNNLKMLNLSG-NSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLE  141 (184)
Q Consensus        64 ~~L~ls~n-~l~~~~p~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~  141 (184)
                      ..++.+++ .+.. .|.     +..+++|+.|++++ |.+++..+..|..+++|+.|+|++|.++ .++...|..+++|+
T Consensus        11 ~~v~~~~~n~l~~-ip~-----l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~   83 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-----LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS   83 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-----SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCC
T ss_pred             CEEEcCCCCCCCc-cCC-----CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCC
Confidence            45688887 7875 443     68889999999996 9999777788999999999999999999 55555899999999


Q ss_pred             EEECCCCCCCccccCccccccccceeecccccccee
Q 038485          142 ELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       142 ~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      .|+|++|++++.++...  ..+. |..+++.+|.+.
T Consensus        84 ~L~l~~N~l~~~~~~~~--~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           84 RLNLSFNALESLSWKTV--QGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             EEECCSSCCSCCCSTTT--CSCC-CCEEECCSSCCC
T ss_pred             EEeCCCCccceeCHHHc--ccCC-ceEEEeeCCCcc
Confidence            99999999998776433  3333 777777887764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.15  E-value=3.3e-10  Score=92.71  Aligned_cols=78  Identities=17%  Similarity=0.201  Sum_probs=40.0

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  113 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~  113 (184)
                      .++++|++++|.+..   ++  .|..+++|++|++++|.+.+ .|.       ..++|++|++++|.+++ .| .++.++
T Consensus       131 ~~L~~L~L~~n~l~~---lp--~~~~l~~L~~L~l~~N~l~~-lp~-------~~~~L~~L~L~~n~l~~-l~-~~~~l~  195 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK---LP--ELQNSSFLKIIDVDNNSLKK-LPD-------LPPSLEFIAAGNNQLEE-LP-ELQNLP  195 (454)
T ss_dssp             TTCCEEECCSSCCSS---CC--CCTTCTTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred             CCCCEEECcCCCCCC---Cc--ccCCCCCCCEEECCCCcCcc-cCC-------CcccccEEECcCCcCCc-Cc-cccCCC
Confidence            355666666665554   43  25666666666666666654 222       12345555555555543 23 344445


Q ss_pred             CCcEEeCCCcccc
Q 038485          114 SLRSLNLFWNRLE  126 (184)
Q Consensus       114 ~L~~L~l~~n~~~  126 (184)
                      +|+.+++++|.++
T Consensus       196 ~L~~L~l~~N~l~  208 (454)
T 1jl5_A          196 FLTAIYADNNSLK  208 (454)
T ss_dssp             TCCEEECCSSCCS
T ss_pred             CCCEEECCCCcCC
Confidence            5555555544444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.14  E-value=5.7e-14  Score=102.63  Aligned_cols=133  Identities=21%  Similarity=0.255  Sum_probs=102.3

Q ss_pred             CceEEEecCCCCCCcc----ccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhh
Q 038485           34 SRVIALDLSDTYGGEY----WYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL  109 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~----~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~  109 (184)
                      ..++.++++++.+...    ..++. .+..+++|++|++++|.+.+ .| .    +..+++|+.|++++|.+. .+|..+
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~-l~-~----~~~l~~L~~L~l~~n~l~-~l~~~~   89 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEK-IS-S----LSGMENLRILSLGRNLIK-KIENLD   89 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEESC-CC-C----HHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred             ccccCcchheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCcc-cc-c----cccCCCCCEEECCCCCcc-cccchh
Confidence            3445555555555430    01222 46789999999999999987 44 4    888999999999999998 677777


Q ss_pred             ccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       110 ~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      ..+++|+.|++++|.++ .++  .+..+++|++|++++|++.+.++ ...+..+++|+.+++++|.+.+
T Consensus        90 ~~~~~L~~L~L~~N~l~-~l~--~~~~l~~L~~L~l~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A           90 AVADTLEELWISYNQIA-SLS--GIEKLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHHHHCSEEEEEEEECC-CHH--HHHHHHHSSEEEESEEECCCHHH-HHHHTTTTTCSEEEECSCHHHH
T ss_pred             hcCCcCCEEECcCCcCC-cCC--ccccCCCCCEEECCCCcCCchhH-HHHHhcCCCCCEEEecCCcccc
Confidence            77899999999999998 565  58889999999999999987532 2345667888888889888754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.12  E-value=5e-10  Score=91.63  Aligned_cols=100  Identities=23%  Similarity=0.193  Sum_probs=50.6

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.+..   ++..    ..+|++|++++|.+.+. | .    +..+++|+.+++++|.+.+ +|..   .
T Consensus       152 l~~L~~L~l~~N~l~~---lp~~----~~~L~~L~L~~n~l~~l-~-~----~~~l~~L~~L~l~~N~l~~-l~~~---~  214 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKK---LPDL----PPSLEFIAAGNNQLEEL-P-E----LQNLPFLTAIYADNNSLKK-LPDL---P  214 (454)
T ss_dssp             CTTCCEEECCSSCCSC---CCCC----CTTCCEEECCSSCCSSC-C-C----CTTCTTCCEEECCSSCCSS-CCCC---C
T ss_pred             CCCCCEEECCCCcCcc---cCCC----cccccEEECcCCcCCcC-c-c----ccCCCCCCEEECCCCcCCc-CCCC---c
Confidence            4566777777776664   3321    23566666666666542 2 2    5555555555555555542 2211   1


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCc
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK  152 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~  152 (184)
                      .+|+.+++++|.++ .+|  .++.+++|++|++++|++++
T Consensus       215 ~~L~~L~l~~n~l~-~lp--~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          215 LSLESIVAGNNILE-ELP--ELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             TTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCCSS
T ss_pred             CcccEEECcCCcCC-ccc--ccCCCCCCCEEECCCCcCCc
Confidence            34455555555444 444  24444445555554444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.11  E-value=3e-10  Score=96.35  Aligned_cols=77  Identities=25%  Similarity=0.334  Sum_probs=36.8

Q ss_pred             CCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCC
Q 038485           60 FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRD  139 (184)
Q Consensus        60 l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~  139 (184)
                      +++|++|++++|.++.. |       ..+++|++|++++|.+++ +|.   .+++|+.|++++|.++ .+|.    .+++
T Consensus        80 l~~L~~L~Ls~N~l~~l-p-------~~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~  142 (622)
T 3g06_A           80 PPELRTLEVSGNQLTSL-P-------VLPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPV----LPPG  142 (622)
T ss_dssp             CTTCCEEEECSCCCSCC-C-------CCCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTT
T ss_pred             CCCCCEEEcCCCcCCcC-C-------CCCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCC----CCCC
Confidence            34555555555555432 1       133455555555555542 222   2344555555555554 3432    1255


Q ss_pred             CcEEECCCCCCCcc
Q 038485          140 LEELDIGGNKIDKF  153 (184)
Q Consensus       140 L~~L~ls~N~l~~~  153 (184)
                      |++|++++|++++.
T Consensus       143 L~~L~Ls~N~l~~l  156 (622)
T 3g06_A          143 LQELSVSDNQLASL  156 (622)
T ss_dssp             CCEEECCSSCCSCC
T ss_pred             CCEEECcCCcCCCc
Confidence            56666666655543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.11  E-value=1.2e-11  Score=100.55  Aligned_cols=85  Identities=21%  Similarity=0.085  Sum_probs=38.4

Q ss_pred             CCcEEECCCCCCCch----hHHhhccCCCCcEEeCCCccccCcccHhhhc----C-CCCCcEEECCCCCCCc----cccC
Q 038485           90 NLKMLNLSGNSFNNS----ILSSLTHLSSLRSLNLFWNRLEGSIDVKELD----S-LRDLEELDIGGNKIDK----FVVS  156 (184)
Q Consensus        90 ~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~----~-~~~L~~L~ls~N~l~~----~~~~  156 (184)
                      +|+.|++++|.+++.    ++..+..+++|+.|++++|.+++..+. .+.    . .++|++|++++|.+++    .++ 
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~-  391 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR-ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA-  391 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH-HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH-
T ss_pred             cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH-HHHHHHcCCCCceEEEECCCCCCChhhHHHHH-
Confidence            444444444444432    233344445555555555555422111 111    1 4455666666555553    222 


Q ss_pred             ccccccccceeecccccccee
Q 038485          157 KGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       157 ~~~~~~l~~L~~~~l~~~~~~  177 (184)
                       ..+..+++|+.+++++|.++
T Consensus       392 -~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          392 -ATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             -HHHHHCCCCCEEECCSSSCC
T ss_pred             -HHHHhCCCccEEECCCCCCC
Confidence             22233455555555665554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.10  E-value=4.5e-10  Score=95.29  Aligned_cols=78  Identities=23%  Similarity=0.224  Sum_probs=56.5

Q ss_pred             CCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceee
Q 038485           89 NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANL  168 (184)
Q Consensus        89 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~  168 (184)
                      ++|+.|++++|.+++ +|   ..+++|+.|++++|.++ .+|.    .+++|+.|++++|+++.. |  ..+..+++|..
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~~l-p--~~l~~l~~L~~  288 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLTRL-P--ESLIHLSSETT  288 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCCSC-C--GGGGGSCTTCE
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCCcC-C--HHHhhccccCE
Confidence            567777777777773 44   45577888888888887 6664    567788888888888854 3  23556777888


Q ss_pred             ccccccceee
Q 038485          169 YKLAGFFAIW  178 (184)
Q Consensus       169 ~~l~~~~~~~  178 (184)
                      +++++|.+++
T Consensus       289 L~L~~N~l~~  298 (622)
T 3g06_A          289 VNLEGNPLSE  298 (622)
T ss_dssp             EECCSCCCCH
T ss_pred             EEecCCCCCC
Confidence            8888888764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.10  E-value=2.9e-11  Score=98.34  Aligned_cols=117  Identities=21%  Similarity=0.108  Sum_probs=51.4

Q ss_pred             CCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhcc-----CCCCcEEeCCCccccCc----cc
Q 038485           60 FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTH-----LSSLRSLNLFWNRLEGS----ID  130 (184)
Q Consensus        60 l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~-----l~~L~~L~l~~n~~~~~----l~  130 (184)
                      +++|++|++++|.++.......+..+..+++|+.|++++|.+.+..+..+..     .++|+.|++++|.+++.    ++
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence            4445555555554443211111112344455555555555554333322221     13555555555555422    22


Q ss_pred             HhhhcCCCCCcEEECCCCCCCccccCc--cccc-cccceeecccccccee
Q 038485          131 VKELDSLRDLEELDIGGNKIDKFVVSK--GTTN-TIKNANLYKLAGFFAI  177 (184)
Q Consensus       131 ~~~~~~~~~L~~L~ls~N~l~~~~~~~--~~~~-~l~~L~~~~l~~~~~~  177 (184)
                      . .+..+++|++|++++|.+.+..+..  ..+. ..++|+.+++++|.++
T Consensus       335 ~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          335 S-VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             H-HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             H-HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            2 3444566666666666655432210  0011 1345556666666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.06  E-value=4.2e-11  Score=95.73  Aligned_cols=142  Identities=18%  Similarity=0.156  Sum_probs=86.6

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhh-cCCCCCcEEECCCCCCCch----hHHh
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERL-SRLNNLKMLNLSGNSFNNS----ILSS  108 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~-~~l~~L~~L~l~~n~~~~~----~p~~  108 (184)
                      ..+++|+|++|.+....  .......+.+|+.|++++|.+.......+...+ ...+.|+.|++++|.++..    ++..
T Consensus       101 ~~L~~L~Ls~n~l~~~~--~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  178 (372)
T 3un9_A          101 HALDEVNLASCQLDPAG--LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG  178 (372)
T ss_dssp             SCEEEEECTTCCCCHHH--HHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHH--HHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence            57778888888776411  111112345677888888877654444422223 2467788888888887643    2334


Q ss_pred             hccCCCCcEEeCCCccccCc----ccHhhhcCCCCCcEEECCCCCCCccccC--ccccccccceeeccccccceee
Q 038485          109 LTHLSSLRSLNLFWNRLEGS----IDVKELDSLRDLEELDIGGNKIDKFVVS--KGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       109 ~~~l~~L~~L~l~~n~~~~~----l~~~~~~~~~~L~~L~ls~N~l~~~~~~--~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      +..+++|++|++++|.+++.    +.. .+...++|+.|++++|.+++....  ...+...++|..+++++|.|++
T Consensus       179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            46677788888888887621    122 455667788888888887653221  1223344667777778877753

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.04  E-value=2.4e-10  Score=90.24  Aligned_cols=128  Identities=18%  Similarity=0.110  Sum_probs=79.5

Q ss_pred             EEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhh---------------------hhhhcCCC-CCcEEE
Q 038485           38 ALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEG---------------------IERLSRLN-NLKMLN   95 (184)
Q Consensus        38 ~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~---------------------~~~~~~l~-~L~~L~   95 (184)
                      .+.+.+|.+..   +++..|..+++|++|++++|.+....+...                     ..+|..+. .++.|+
T Consensus        84 ~l~~~~N~l~~---l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~  160 (350)
T 4ay9_X           84 IRIEKANNLLY---INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW  160 (350)
T ss_dssp             EEEEEETTCCE---ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred             hhcccCCcccc---cCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhc
Confidence            34555566665   556666666666666666666654332210                     01133333 467788


Q ss_pred             CCCCCCCchhHHhhccCCCCcEEeCCC-ccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccc
Q 038485           96 LSGNSFNNSILSSLTHLSSLRSLNLFW-NRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLA  172 (184)
Q Consensus        96 l~~n~~~~~~p~~~~~l~~L~~L~l~~-n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~  172 (184)
                      +++|.++ .+|.......+++.+++.+ |.++ .+|.+.|..+++|+.|++++|+++..++  ..+..|++|..+++.
T Consensus       161 L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~  234 (350)
T 4ay9_X          161 LNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTY  234 (350)
T ss_dssp             CCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTCT
T ss_pred             ccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccCC
Confidence            8888887 4444444556788888865 5565 7776667888888888888888887654  335566666655543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.92  E-value=1.1e-09  Score=87.50  Aligned_cols=120  Identities=19%  Similarity=0.144  Sum_probs=89.6

Q ss_pred             CceEEEecCCCCCCcccc--ccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchh----HH
Q 038485           34 SRVIALDLSDTYGGEYWY--LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSI----LS  107 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~--~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~----p~  107 (184)
                      .++++|+|++|.++....  +........+.|++|++++|.++......+..++...++|++|++++|.+++..    +.
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~  205 (372)
T 3un9_A          126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA  205 (372)
T ss_dssp             HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred             HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence            468999999999975211  111111356889999999999876544444444688999999999999998643    55


Q ss_pred             hhccCCCCcEEeCCCccccCc----ccHhhhcCCCCCcEEECCCCCCCccc
Q 038485          108 SLTHLSSLRSLNLFWNRLEGS----IDVKELDSLRDLEELDIGGNKIDKFV  154 (184)
Q Consensus       108 ~~~~l~~L~~L~l~~n~~~~~----l~~~~~~~~~~L~~L~ls~N~l~~~~  154 (184)
                      .+...++|+.|++++|.+++.    +.. .+...++|++|++++|++.+..
T Consensus       206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~-~L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          206 QLDRNRQLQELNVAYNGAGDTAALALAR-AAREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             HGGGCSCCCEEECCSSCCCHHHHHHHHH-HHHHCSSCCEEECTTSSCCHHH
T ss_pred             HHhcCCCcCeEECCCCCCCHHHHHHHHH-HHHhCCCCCEEeccCCCCCHHH
Confidence            667788999999999999732    222 3556789999999999998743

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.87  E-value=1.1e-08  Score=79.96  Aligned_cols=85  Identities=16%  Similarity=0.152  Sum_probs=60.4

Q ss_pred             CCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCc-EEECCCCCCCccccCccccccccce
Q 038485           88 LNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLE-ELDIGGNKIDKFVVSKGTTNTIKNA  166 (184)
Q Consensus        88 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~-~L~ls~N~l~~~~~~~~~~~~l~~L  166 (184)
                      +++|+.+++++|.+.......|..+.+|+.+++.+| ++ .++...|..+++|+ .+++.. .+....+  .+|..+.+|
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~--~aF~~c~~L  299 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEF--GAFMGCDNL  299 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECT--TTTTTCTTE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEch--hhhhCCccC
Confidence            567788888887777555566778888888888777 65 67766788888887 888776 5655333  556677777


Q ss_pred             eecccccccee
Q 038485          167 NLYKLAGFFAI  177 (184)
Q Consensus       167 ~~~~l~~~~~~  177 (184)
                      +.+++..+.+.
T Consensus       300 ~~l~l~~n~i~  310 (329)
T 3sb4_A          300 RYVLATGDKIT  310 (329)
T ss_dssp             EEEEECSSCCC
T ss_pred             CEEEeCCCccC
Confidence            77777666664

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.78  E-value=1.6e-08  Score=79.06  Aligned_cols=87  Identities=17%  Similarity=0.230  Sum_probs=45.4

Q ss_pred             CCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCc-EEeCCCccccCcccHhhhcCCC
Q 038485           60 FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR-SLNLFWNRLEGSIDVKELDSLR  138 (184)
Q Consensus        60 l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~-~L~l~~n~~~~~l~~~~~~~~~  138 (184)
                      +++|+.+++++|.+....+..    |..+++|+.+++..| +....+..|..+.+|+ .+++.+ .++ .++...|..|+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~a----F~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~  297 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFT----FAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCD  297 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTT----TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCT
T ss_pred             cCCCeEEECCCCCcceecHhh----hhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCc
Confidence            445555555555555443333    555555555555554 4433344455555555 555554 443 44444555555


Q ss_pred             CCcEEECCCCCCCcc
Q 038485          139 DLEELDIGGNKIDKF  153 (184)
Q Consensus       139 ~L~~L~ls~N~l~~~  153 (184)
                      +|+.++++.|.+...
T Consensus       298 ~L~~l~l~~n~i~~I  312 (329)
T 3sb4_A          298 NLRYVLATGDKITTL  312 (329)
T ss_dssp             TEEEEEECSSCCCEE
T ss_pred             cCCEEEeCCCccCcc
Confidence            555555555555543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.76  E-value=7.2e-09  Score=74.78  Aligned_cols=118  Identities=17%  Similarity=0.077  Sum_probs=59.1

Q ss_pred             CCceEEEecCCC-CCCcccc-ccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchh----H
Q 038485           33 MSRVIALDLSDT-YGGEYWY-LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSI----L  106 (184)
Q Consensus        33 ~~~l~~L~l~~n-~l~~~~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~----p  106 (184)
                      ...+++|+|++| .+...+. .-...+...++|++|++++|.+.......+.+++...++|++|++++|.+.+..    .
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            345666666666 5543110 011122345566666666666654333333333445556666666666665432    3


Q ss_pred             HhhccCCCCcEEeC--CCccccCc----ccHhhhcCCCCCcEEECCCCCCC
Q 038485          107 SSLTHLSSLRSLNL--FWNRLEGS----IDVKELDSLRDLEELDIGGNKID  151 (184)
Q Consensus       107 ~~~~~l~~L~~L~l--~~n~~~~~----l~~~~~~~~~~L~~L~ls~N~l~  151 (184)
                      ..+...++|+.|++  ++|.+...    +.. .+...++|++|++++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence            33444555666666  55655421    111 3344456666666666553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.70  E-value=1.3e-08  Score=73.39  Aligned_cols=121  Identities=20%  Similarity=0.140  Sum_probs=91.5

Q ss_pred             cCCCCCCCCEEeCCCC-cCCCcchhhhhhhhcCCCCCcEEECCCCCCCchh----HHhhccCCCCcEEeCCCccccCc--
Q 038485           56 LFTPFQQLESLDLTDN-KIASCVENEGIERLSRLNNLKMLNLSGNSFNNSI----LSSLTHLSSLRSLNLFWNRLEGS--  128 (184)
Q Consensus        56 ~~~~l~~L~~L~ls~n-~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~----p~~~~~l~~L~~L~l~~n~~~~~--  128 (184)
                      .+...+.|++|++++| .+.......+.+++...++|++|++++|.+.+..    ...+...++|++|++++|.+.+.  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            4567899999999999 8876555555566788899999999999998654    34455668999999999999732  


Q ss_pred             --ccHhhhcCCCCCcEEEC--CCCCCCccccC--ccccccccceeecccccccee
Q 038485          129 --IDVKELDSLRDLEELDI--GGNKIDKFVVS--KGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       129 --l~~~~~~~~~~L~~L~l--s~N~l~~~~~~--~~~~~~l~~L~~~~l~~~~~~  177 (184)
                        +.. .+...++|++|++  ++|.+......  ...+...++|..+++++|.+.
T Consensus       111 ~~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              233 5677889999999  88999764221  123345567888888888874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.70  E-value=2.7e-09  Score=81.44  Aligned_cols=67  Identities=33%  Similarity=0.404  Sum_probs=54.0

Q ss_pred             cCCCCCcEEECCCCCCCc--hhHHhhccCCCCcEEeCCCccccCcccHhhhcCCC--CCcEEECCCCCCCcccc
Q 038485           86 SRLNNLKMLNLSGNSFNN--SILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLR--DLEELDIGGNKIDKFVV  155 (184)
Q Consensus        86 ~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~--~L~~L~ls~N~l~~~~~  155 (184)
                      ..++.|+.|++++|.+++  .+|..+..+++|+.|+|++|.+++ +.  .+..+.  +|+.|++++|++++..|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ER--ELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-GG--GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-ch--hhhhcccCCcceEEccCCcCccccC
Confidence            457899999999999996  445667789999999999999984 32  344444  89999999999987655

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.58  E-value=8.8e-09  Score=86.14  Aligned_cols=90  Identities=11%  Similarity=0.103  Sum_probs=40.7

Q ss_pred             CCCCCcEEECCCCC--CCchhHHhhcc-CCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccc
Q 038485           87 RLNNLKMLNLSGNS--FNNSILSSLTH-LSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTI  163 (184)
Q Consensus        87 ~l~~L~~L~l~~n~--~~~~~p~~~~~-l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l  163 (184)
                      .+++|+.|+++.+.  +++..+..+.. +++|+.|++++|.+++......+..+++|+.|++++|++++.... .....+
T Consensus       434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~l  512 (592)
T 3ogk_B          434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA-AAVTKL  512 (592)
T ss_dssp             HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH-HHHHHC
T ss_pred             hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH-HHHHhc
Confidence            34555555554322  44333333332 455666666655554211111344555666666666665432111 111234


Q ss_pred             cceeecccccccee
Q 038485          164 KNANLYKLAGFFAI  177 (184)
Q Consensus       164 ~~L~~~~l~~~~~~  177 (184)
                      ++|+.+++++|.++
T Consensus       513 ~~L~~L~ls~n~it  526 (592)
T 3ogk_B          513 PSLRYLWVQGYRAS  526 (592)
T ss_dssp             SSCCEEEEESCBCC
T ss_pred             CccCeeECcCCcCC
Confidence            44555555555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.43  E-value=2.7e-07  Score=77.09  Aligned_cols=109  Identities=17%  Similarity=0.093  Sum_probs=62.8

Q ss_pred             ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCC----chhHHhhc
Q 038485           35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFN----NSILSSLT  110 (184)
Q Consensus        35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~----~~~p~~~~  110 (184)
                      ++++|+++++.......+ ......+++|++|++++|.+.+.........+..+++|+.|++++|.++    ...+..+.
T Consensus       139 ~L~~L~L~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~  217 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDGL-LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR  217 (592)
T ss_dssp             GCCEEEEESCEEEEHHHH-HHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred             cCcEEECcCCCCcCHHHH-HHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence            478888877652110001 1112356778888888777655422111111455677777777777775    23445556


Q ss_pred             cCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECC
Q 038485          111 HLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIG  146 (184)
Q Consensus       111 ~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls  146 (184)
                      .+++|+.|++++|.+. .++. .+..+++|++++++
T Consensus       218 ~~~~L~~L~L~~~~~~-~l~~-~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEIL-ELVG-FFKAAANLEEFCGG  251 (592)
T ss_dssp             HCTTCCEEECSSCBGG-GGHH-HHHHCTTCCEEEEC
T ss_pred             hCCCCcEEeccCccHH-HHHH-HHhhhhHHHhhccc
Confidence            6777777777777765 3443 55556666666655

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.34  E-value=5.2e-08  Score=81.40  Aligned_cols=116  Identities=9%  Similarity=0.093  Sum_probs=62.5

Q ss_pred             CCCCCCEEeCC--C----CcCCCcchh-hhhhhhcCCCCCcEEECCCCCCCchhHHhhcc-CCCCcEEeCCCccccCccc
Q 038485           59 PFQQLESLDLT--D----NKIASCVEN-EGIERLSRLNNLKMLNLSGNSFNNSILSSLTH-LSSLRSLNLFWNRLEGSID  130 (184)
Q Consensus        59 ~l~~L~~L~ls--~----n~l~~~~p~-~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~-l~~L~~L~l~~n~~~~~l~  130 (184)
                      .+++|+.|+++  +    +.++....+ .....+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++...
T Consensus       395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~  473 (594)
T 2p1m_B          395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM  473 (594)
T ss_dssp             HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred             hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence            35667777766  2    344322111 1111134556777777766 555555555544 6777777777777753322


Q ss_pred             HhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccce
Q 038485          131 VKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFA  176 (184)
Q Consensus       131 ~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~  176 (184)
                      ......+++|+.|++++|++++.... .....+++|+.++++++.+
T Consensus       474 ~~l~~~~~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          474 HHVLSGCDSLRKLEIRDCPFGDKALL-ANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCSCCHHHHH-HTGGGGGGSSEEEEESSCC
T ss_pred             HHHHhcCCCcCEEECcCCCCcHHHHH-HHHHhCCCCCEEeeeCCCC
Confidence            21225577777777777777443221 1122345556666666655

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.30  E-value=1.2e-06  Score=66.70  Aligned_cols=81  Identities=30%  Similarity=0.353  Sum_probs=62.8

Q ss_pred             CCCCCCEEeCCCCcCCCcc--hhhhhhhhcCCCCCcEEECCCCCCCch-hHHhhccCCCCcEEeCCCccccCcccH----
Q 038485           59 PFQQLESLDLTDNKIASCV--ENEGIERLSRLNNLKMLNLSGNSFNNS-ILSSLTHLSSLRSLNLFWNRLEGSIDV----  131 (184)
Q Consensus        59 ~l~~L~~L~ls~n~l~~~~--p~~~~~~~~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~~~~~l~~----  131 (184)
                      .+++|+.|++++|.+++..  +..    +..+++|+.|++++|.+.+. ....+..+ +|+.|++++|.+.+.++.    
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~----~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y  242 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSI----VQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTY  242 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTH----HHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhH----HhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhH
Confidence            4789999999999999843  343    66899999999999999854 12233334 899999999999865541    


Q ss_pred             --hhhcCCCCCcEEE
Q 038485          132 --KELDSLRDLEELD  144 (184)
Q Consensus       132 --~~~~~~~~L~~L~  144 (184)
                        ..+..+++|+.||
T Consensus       243 ~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          243 ISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHCTTCCEES
T ss_pred             HHHHHHHCcccCeEC
Confidence              2467889999886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.22  E-value=2.9e-07  Score=76.89  Aligned_cols=112  Identities=13%  Similarity=0.132  Sum_probs=80.7

Q ss_pred             CCceEEEecC--C----CCCCcccccc-----CccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcC-CCCCcEEECCCCC
Q 038485           33 MSRVIALDLS--D----TYGGEYWYLN-----ASLFTPFQQLESLDLTDNKIASCVENEGIERLSR-LNNLKMLNLSGNS  100 (184)
Q Consensus        33 ~~~l~~L~l~--~----n~l~~~~~~~-----~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~-l~~L~~L~l~~n~  100 (184)
                      .++++.|+++  +    +.++.   .+     ...+..+++|+.|++++ .++......    +.. +++|+.|++++|.
T Consensus       396 ~~~L~~L~L~~~~~~~~~~l~~---~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~----l~~~~~~L~~L~L~~~~  467 (594)
T 2p1m_B          396 RPNMTRFRLCIIEPKAPDYLTL---EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY----IGTYAKKMEMLSVAFAG  467 (594)
T ss_dssp             CTTCCEEEEEESSTTCCCTTTC---CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH----HHHHCTTCCEEEEESCC
T ss_pred             CCCcceeEeecccCCCcccccC---CchhhHHHHHHhhCCCccEEeecC-cccHHHHHH----HHHhchhccEeeccCCC
Confidence            4578888888  3    44442   11     11245678999999987 565544443    544 8899999999999


Q ss_pred             CCchhHHhh-ccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCc
Q 038485          101 FNNSILSSL-THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDK  152 (184)
Q Consensus       101 ~~~~~p~~~-~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~  152 (184)
                      +++..+..+ ..+++|+.|++++|.+++.........+++|+.|++++|+++.
T Consensus       468 i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          468 DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred             CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence            987666665 6789999999999999633332234568899999999999854

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.14  E-value=1e-06  Score=70.04  Aligned_cols=136  Identities=17%  Similarity=0.174  Sum_probs=81.3

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhc--CCCCCcEEECCC--CCCCc-----
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLS--RLNNLKMLNLSG--NSFNN-----  103 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~--~l~~L~~L~l~~--n~~~~-----  103 (184)
                      .+.+++|.++++.-..   +++  +. +++|+.|++..+.+.......    +.  .+++|+.|++..  +...+     
T Consensus       171 ~P~L~~L~L~g~~~l~---l~~--~~-~~~L~~L~L~~~~l~~~~l~~----l~~~~lp~L~~L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNLS---IGK--KP-RPNLKSLEIISGGLPDSVVED----ILGSDLPNLEKLVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             CTTCCEEEEECCBTCB---CCS--CB-CTTCSEEEEECSBCCHHHHHH----HHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred             CCCCcEEEEeCCCCce---ecc--cc-CCCCcEEEEecCCCChHHHHH----HHHccCCCCcEEEEeccccccccchhHH
Confidence            4678888887763111   322  22 678888888877765332222    33  688899888753  21111     


Q ss_pred             hhHHhh--ccCCCCcEEeCCCccccCcccHhhh--cCCCCCcEEECCCCCCCccccC--ccccccccceeecccccccee
Q 038485          104 SILSSL--THLSSLRSLNLFWNRLEGSIDVKEL--DSLRDLEELDIGGNKIDKFVVS--KGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       104 ~~p~~~--~~l~~L~~L~l~~n~~~~~l~~~~~--~~~~~L~~L~ls~N~l~~~~~~--~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      .+...+  ..+++|++|++.+|.+.+..+....  ..+++|++|+++.|.+.+....  ...+..+++|+.++++.|.++
T Consensus       241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            111122  2468899999988888643322112  2567899999999988774221  112235667777777888775


Q ss_pred             e
Q 038485          178 W  178 (184)
Q Consensus       178 ~  178 (184)
                      +
T Consensus       321 d  321 (362)
T 2ra8_A          321 D  321 (362)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.09  E-value=3e-06  Score=60.52  Aligned_cols=84  Identities=18%  Similarity=0.272  Sum_probs=50.1

Q ss_pred             CCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCC-CCchhHHhhccC----CCCcEEeCCCcc-ccCcccHhhh
Q 038485           61 QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNS-FNNSILSSLTHL----SSLRSLNLFWNR-LEGSIDVKEL  134 (184)
Q Consensus        61 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~l----~~L~~L~l~~n~-~~~~l~~~~~  134 (184)
                      -.|+.||++++.++...-..    +..+++|+.|++++|. +++.....+..+    ++|++|++++|. +++. ....+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~----L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L  135 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDH----MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIAL  135 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGG----GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHG
T ss_pred             ceEeEEeCcCCCccHHHHHH----hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHH
Confidence            35666677766665443333    5666777777777764 665555555543    357777777764 5522 12245


Q ss_pred             cCCCCCcEEECCCCC
Q 038485          135 DSLRDLEELDIGGNK  149 (184)
Q Consensus       135 ~~~~~L~~L~ls~N~  149 (184)
                      ..+++|++|++++++
T Consensus       136 ~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          136 HHFRNLKYLFLSDLP  150 (176)
T ss_dssp             GGCTTCCEEEEESCT
T ss_pred             hcCCCCCEEECCCCC
Confidence            567777777777654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.05  E-value=1.3e-05  Score=64.50  Aligned_cols=59  Identities=17%  Similarity=0.150  Sum_probs=27.3

Q ss_pred             hcCCCCCcEEECCCCCCC-----chhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEEC
Q 038485           85 LSRLNNLKMLNLSGNSFN-----NSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDI  145 (184)
Q Consensus        85 ~~~l~~L~~L~l~~n~~~-----~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~l  145 (184)
                      |..+++|+.+.+.++.+.     ...+..|..+.+|+.+.+.. .++ .++...|..|++|+.+.+
T Consensus       267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEE
T ss_pred             hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEE
Confidence            444455555555444332     12233444555555555542 233 344444555555555555

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.04  E-value=1.3e-05  Score=64.40  Aligned_cols=109  Identities=11%  Similarity=0.105  Sum_probs=82.6

Q ss_pred             ceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCC-----CcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhh
Q 038485           35 RVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIA-----SCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL  109 (184)
Q Consensus        35 ~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~-----~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~  109 (184)
                      .++.+.+. +.+..   +....|.++.+|+.+.+.++.+.     ...+..    |..+++|+.+.+.. .+.......|
T Consensus       249 ~L~~i~lp-~~i~~---I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a----F~~c~~L~~l~l~~-~i~~I~~~aF  319 (401)
T 4fdw_A          249 GITTVKLP-NGVTN---IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC----LEGCPKLARFEIPE-SIRILGQGLL  319 (401)
T ss_dssp             CCSEEEEE-TTCCE---ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT----TTTCTTCCEECCCT-TCCEECTTTT
T ss_pred             CccEEEeC-CCccE---EChhHhhCCCCCCEEEeCCccccCCcccEECHHH----hhCCccCCeEEeCC-ceEEEhhhhh
Confidence            34555552 33443   77788999999999999887664     233444    88999999999994 4765567789


Q ss_pred             ccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcccc
Q 038485          110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVV  155 (184)
Q Consensus       110 ~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~  155 (184)
                      ..+.+|+.+.+..+ ++ .++...|..+ +|+.+++.+|.+.....
T Consensus       320 ~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~  362 (401)
T 4fdw_A          320 GGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFE  362 (401)
T ss_dssp             TTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred             cCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence            99999999999665 65 6777689999 99999999998766443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.01  E-value=6.4e-06  Score=58.80  Aligned_cols=86  Identities=17%  Similarity=0.210  Sum_probs=66.5

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCc-CCCcchhhhhhhhcCC----CCCcEEECCCCC-CCchhHH
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNK-IASCVENEGIERLSRL----NNLKMLNLSGNS-FNNSILS  107 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~~~~~l----~~L~~L~l~~n~-~~~~~p~  107 (184)
                      -++++||++++.++.   .....+..+++|+.|++++|. ++...-..    +..+    ++|+.|++++|. +++....
T Consensus        61 ~~L~~LDLs~~~Itd---~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~----L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           61 YKIQAIDATDSCIMS---IGFDHMEGLQYVEKIRLCKCHYIEDGCLER----LSQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CCEEEEEEESCCCCG---GGGGGGTTCSCCCEEEEESCTTCCHHHHHH----HHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             ceEeEEeCcCCCccH---HHHHHhcCCCCCCEEEeCCCCccCHHHHHH----HHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            368999999999876   333345789999999999985 55433222    5654    379999999975 8887788


Q ss_pred             hhccCCCCcEEeCCCcc-cc
Q 038485          108 SLTHLSSLRSLNLFWNR-LE  126 (184)
Q Consensus       108 ~~~~l~~L~~L~l~~n~-~~  126 (184)
                      .+..+++|++|+++++. ++
T Consensus       134 ~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          134 ALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HGGGCTTCCEEEEESCTTCC
T ss_pred             HHhcCCCCCEEECCCCCCCC
Confidence            88899999999999985 54

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.66  E-value=5.3e-05  Score=54.98  Aligned_cols=43  Identities=21%  Similarity=0.333  Sum_probs=18.6

Q ss_pred             CCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCC
Q 038485           60 FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFN  102 (184)
Q Consensus        60 l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~  102 (184)
                      .+.|+.|++++|.+.......+.+++..-++|+.|++++|.+.
T Consensus        69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            3444444554444443332222233334444444444444444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.66  E-value=1.2e-05  Score=63.76  Aligned_cols=119  Identities=17%  Similarity=0.130  Sum_probs=74.5

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCC--CcCCCcc-hhhhhhhhc--CCCCCcEEECCCCCCCchhHH
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTD--NKIASCV-ENEGIERLS--RLNNLKMLNLSGNSFNNSILS  107 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~--n~l~~~~-p~~~~~~~~--~l~~L~~L~l~~n~~~~~~p~  107 (184)
                      .++++.|++..+.+.... +..-....+++|+.|+++.  +...+.. ...+.+.+.  .+++|+.|++.+|.+.+..+.
T Consensus       192 ~~~L~~L~L~~~~l~~~~-l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~  270 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSV-VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE  270 (362)
T ss_dssp             CTTCSEEEEECSBCCHHH-HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred             CCCCcEEEEecCCCChHH-HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence            467899999888776411 1000013578899998753  2211110 101011132  478999999999998765544


Q ss_pred             hhc---cCCCCcEEeCCCccccCcccH---hhhcCCCCCcEEECCCCCCCc
Q 038485          108 SLT---HLSSLRSLNLFWNRLEGSIDV---KELDSLRDLEELDIGGNKIDK  152 (184)
Q Consensus       108 ~~~---~l~~L~~L~l~~n~~~~~l~~---~~~~~~~~L~~L~ls~N~l~~  152 (184)
                      .+.   .++.|++|+++.|.+.+.-..   ..+..+++|+.|++++|.+++
T Consensus       271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            443   468899999999988742111   023456899999999998875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.59  E-value=0.00014  Score=52.72  Aligned_cols=119  Identities=12%  Similarity=0.040  Sum_probs=81.4

Q ss_pred             CCCCCCCCEEeCCCC-cCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhH----HhhccCCCCcEEeCCCccccCc---
Q 038485           57 FTPFQQLESLDLTDN-KIASCVENEGIERLSRLNNLKMLNLSGNSFNNSIL----SSLTHLSSLRSLNLFWNRLEGS---  128 (184)
Q Consensus        57 ~~~l~~L~~L~ls~n-~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p----~~~~~l~~L~~L~l~~n~~~~~---  128 (184)
                      ...-+.|+.|+++++ .+.......+.+++..-++|+.|++++|.+.+...    +.+..-..|++|+|+.|.|.+.   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            456788999999985 77655555556668888999999999999986544    4455668999999999999732   


Q ss_pred             -ccHhhhcCCCCCcEEECCCC---CCCcccc--Cccccccccceeeccccccce
Q 038485          129 -IDVKELDSLRDLEELDIGGN---KIDKFVV--SKGTTNTIKNANLYKLAGFFA  176 (184)
Q Consensus       129 -l~~~~~~~~~~L~~L~ls~N---~l~~~~~--~~~~~~~l~~L~~~~l~~~~~  176 (184)
                       +.. .+...+.|+.|++++|   .+.....  -...+..-+.|..++++.+.+
T Consensus       117 ala~-aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 RLLR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHH-HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence             222 4556778999999865   3332110  012333445566666665543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.32  E-value=0.00097  Score=53.06  Aligned_cols=90  Identities=11%  Similarity=0.269  Sum_probs=50.8

Q ss_pred             ccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccH
Q 038485           52 LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV  131 (184)
Q Consensus        52 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~  131 (184)
                      +....|.++..|+.+.+.. .+.......    |....+|+.+.+..+ ++......|.++.+|+.+.+..+ ++ .+..
T Consensus       279 I~~~aF~~c~~L~~i~l~~-~i~~I~~~a----F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~  350 (394)
T 4gt6_A          279 IGTGAFMNCPALQDIEFSS-RITELPESV----FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPE  350 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCT-TCCEECTTT----TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCG
T ss_pred             ecCcccccccccccccCCC-cccccCcee----ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhH
Confidence            4445555666666666643 233333333    666666776666543 33233455666667777766543 44 5555


Q ss_pred             hhhcCCCCCcEEECCCCC
Q 038485          132 KELDSLRDLEELDIGGNK  149 (184)
Q Consensus       132 ~~~~~~~~L~~L~ls~N~  149 (184)
                      .+|..|++|+.+++.++.
T Consensus       351 ~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          351 SAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             GGGTTCTTCCEEEESSCH
T ss_pred             hHhhCCCCCCEEEECCce
Confidence            566777777777666553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.99  E-value=0.0021  Score=50.66  Aligned_cols=88  Identities=15%  Similarity=0.170  Sum_probs=43.8

Q ss_pred             ccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccH
Q 038485           52 LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV  131 (184)
Q Consensus        52 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~  131 (184)
                      +....|..+..|+.+.+..+ +.......    |..+++|+.+.+..+.+.......|..+.+|+.+.+..+ ++ .+..
T Consensus       254 I~~~aF~~~~~l~~i~l~~~-i~~i~~~a----F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~  326 (379)
T 4h09_A          254 IGSFLLQNCTALKTLNFYAK-VKTVPYLL----CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQV  326 (379)
T ss_dssp             ECTTTTTTCTTCCEEEECCC-CSEECTTT----TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECT
T ss_pred             eCccccceeehhcccccccc-ceeccccc----cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHH
Confidence            33444455555555555432 22222222    555556666666555554333445555666666666433 33 4444


Q ss_pred             hhhcCCCCCcEEECC
Q 038485          132 KELDSLRDLEELDIG  146 (184)
Q Consensus       132 ~~~~~~~~L~~L~ls  146 (184)
                      .+|..|++|+.+.+.
T Consensus       327 ~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          327 YAFKNCKALSTISYP  341 (379)
T ss_dssp             TTTTTCTTCCCCCCC
T ss_pred             HHhhCCCCCCEEEEC
Confidence            455566666655553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.92  E-value=0.0063  Score=47.87  Aligned_cols=110  Identities=15%  Similarity=0.153  Sum_probs=76.0

Q ss_pred             ccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccH
Q 038485           52 LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV  131 (184)
Q Consensus        52 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~  131 (184)
                      +....|..+..|+.+.+..+ +.......    |.....|+.+.+..+ +.......|..+.+|+.+.+.++.++ .++.
T Consensus       231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~a----F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~  303 (379)
T 4h09_A          231 LGDGAFYGMKALDEIAIPKN-VTSIGSFL----LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEP  303 (379)
T ss_dssp             ECTTTTTTCSSCCEEEECTT-CCEECTTT----TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECT
T ss_pred             EccccccCCccceEEEcCCC-ccEeCccc----cceeehhcccccccc-ceeccccccccccccccccccccccc-eehh
Confidence            55566777888888888765 44444444    777888888888654 44344567888999999999988887 7777


Q ss_pred             hhhcCCCCCcEEECCCCCCCccccCccccccccceeeccc
Q 038485          132 KELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKL  171 (184)
Q Consensus       132 ~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l  171 (184)
                      ..|..|.+|+.+.+..+ ++....  .+|...++|+.+.+
T Consensus       304 ~aF~~c~~L~~i~lp~~-l~~I~~--~aF~~C~~L~~i~i  340 (379)
T 4h09_A          304 RVFMDCVKLSSVTLPTA-LKTIQV--YAFKNCKALSTISY  340 (379)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECT--TTTTTCTTCCCCCC
T ss_pred             hhhcCCCCCCEEEcCcc-ccEEHH--HHhhCCCCCCEEEE
Confidence            78999999999999644 544322  34444444444433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.87  E-value=0.0061  Score=48.40  Aligned_cols=61  Identities=15%  Similarity=0.162  Sum_probs=35.8

Q ss_pred             hcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCC
Q 038485           85 LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGN  148 (184)
Q Consensus        85 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N  148 (184)
                      |....+|+.+.+..+ +.......|..+.+|+.+++..+ ++ .+....|..|++|+.+.+..+
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc
Confidence            455566666666543 33233455666677777776543 44 555556667777777766544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.66  E-value=0.012  Score=46.70  Aligned_cols=113  Identities=16%  Similarity=0.185  Sum_probs=80.5

Q ss_pred             ccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccH
Q 038485           52 LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV  131 (184)
Q Consensus        52 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~  131 (184)
                      +....|..+..|+.+.+..+.. ......    |...+.|+.+.+.. .+.......|..+.+|+.+.+..+ ++ .+..
T Consensus       256 i~~~aF~~c~~L~~i~lp~~~~-~I~~~a----F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~  327 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDSVV-SIGTGA----FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILD  327 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTTCC-EECTTT----TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECT
T ss_pred             cccceeeecccccEEecccccc-eecCcc----cccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehH
Confidence            4456788899999999876543 233343    78889999999864 455344667889999999999765 55 6666


Q ss_pred             hhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccc
Q 038485          132 KELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFF  175 (184)
Q Consensus       132 ~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~  175 (184)
                      ..|..|.+|+.+.+..+ ++...  ..+|...++|+.+.+.++.
T Consensus       328 ~aF~~C~~L~~i~ip~s-v~~I~--~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          328 DAFAGCEQLERIAIPSS-VTKIP--ESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCBCC--GGGGTTCTTCCEEEESSCH
T ss_pred             hHhhCCCCCCEEEECcc-cCEEh--HhHhhCCCCCCEEEECCce
Confidence            68999999999998643 55432  3556666666666666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.66  E-value=0.0058  Score=41.07  Aligned_cols=55  Identities=20%  Similarity=0.196  Sum_probs=38.0

Q ss_pred             EEecCCCCCC--ccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCC
Q 038485           38 ALDLSDTYGG--EYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFN  102 (184)
Q Consensus        38 ~L~l~~n~l~--~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~  102 (184)
                      .++-+++.++  .   +|...   -.+++.|++++|.++...+..    |..+++|+.+++.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~---vP~~l---p~~l~~L~Ls~N~l~~l~~~~----f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWAS---LPTAF---PVDTTELVLTGNNLTALPPGL----LDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTT---SCSCC---CTTCSEEECTTSCCSSCCTTT----GGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCcccc---CCCCC---CcCCCEEECCCCcCCccChhh----hhhccccCEEEecCCCee
Confidence            5666677666  4   55332   245788888888888766655    777778888888877764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.48  E-value=0.0028  Score=42.62  Aligned_cols=56  Identities=20%  Similarity=0.170  Sum_probs=34.2

Q ss_pred             EEeCCCCcCC-CcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCcccc
Q 038485           65 SLDLTDNKIA-SCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLE  126 (184)
Q Consensus        65 ~L~ls~n~l~-~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~  126 (184)
                      .++.+++.++ ...|.      .-.++++.|+|++|.++...+..|..+++|+.|+|.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~------~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT------AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCS------CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCC------CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666665 12332      12335777777777777444555666777777777777653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.40  E-value=0.0055  Score=48.63  Aligned_cols=88  Identities=16%  Similarity=0.195  Sum_probs=67.3

Q ss_pred             cCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHh
Q 038485           53 NASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVK  132 (184)
Q Consensus        53 ~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~  132 (184)
                      +...|..+.+|+.+.+..+ +.......    |....+|+.+++..+ ++......|.++.+|+.+.+..+ ++ .+...
T Consensus       289 ~~~~F~~~~~L~~i~l~~~-i~~I~~~a----F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~  360 (394)
T 4fs7_A          289 PEKTFYGCSSLTEVKLLDS-VKFIGEEA----FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGAN  360 (394)
T ss_dssp             CTTTTTTCTTCCEEEECTT-CCEECTTT----TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTT
T ss_pred             ccccccccccccccccccc-cceechhh----hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHH
Confidence            3455677788888888664 54444444    888999999999754 55455678999999999999876 65 67777


Q ss_pred             hhcCCCCCcEEECCCC
Q 038485          133 ELDSLRDLEELDIGGN  148 (184)
Q Consensus       133 ~~~~~~~L~~L~ls~N  148 (184)
                      +|..|++|+.+++..+
T Consensus       361 aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          361 AFQGCINLKKVELPKR  376 (394)
T ss_dssp             TBTTCTTCCEEEEEGG
T ss_pred             HhhCCCCCCEEEECCC
Confidence            8999999999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	184
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.6 bits (130), Expect = 7e-10
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 11/99 (11%)

Query: 50  WYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL 109
              + S  +  + L  L L  N I        I  +S L  L+ L  + N    S +SSL
Sbjct: 296 QLEDISPISNLKNLTYLTLYFNNI------SDISPVSSLTKLQRLFFANNKV--SDVSSL 347

Query: 110 THLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGN 148
            +L+++  L+   N++        L +L  + +L +   
Sbjct: 348 ANLTNINWLSAGHNQISDLT---PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 4e-06
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 48  EYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILS 107
               L A+  +    L  L    N   +  + E I  +S L NL  L L  N+ ++  +S
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--IS 323

Query: 108 SLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
            ++ L+ L+ L    N++     V  L +L ++  L  G N+I
Sbjct: 324 PVSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGHNQI 363

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 85  LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDL 140
            + L+ +  L        +  +  + +L++L  +N   N+L     +K L  L D+
Sbjct: 40  QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDI 93

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.4 bits (111), Expect = 2e-07
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 95  NLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK 149
           +L  N    ++   LT L  L SLN+ +N L G I   +  +L+  +      NK
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI--PQGGNLQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 36.7 bits (83), Expect = 0.001
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 5/106 (4%)

Query: 20  DCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVEN 79
           D  +      ++ +                   +       + L  LDL +N+I   +  
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262

Query: 80  EGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRL 125
                L++L  L  LN+S N+    I     +L          N+ 
Sbjct: 263 G----LTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKC 303

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 1e-06
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 11/94 (11%)

Query: 63  LESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNN----SILSSLTHLSSLRSL 118
           ++SLD+   +++   +    E L  L   +++ L            I S+L    +L  L
Sbjct: 4   IQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 119 NLFWNRLEGSIDVKELDSLRD----LEELDIGGN 148
           NL  N L        L  L+     +++L +   
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-05
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 90  NLKMLNLSGNSFNNSILSSL-THLSSLRSLNLFWNRLEGSIDVKE----LDSLRDLEELD 144
           +++ L++     +++  + L   L   + + L    L      K+    L     L EL+
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELN 61

Query: 145 IGGNKI 150
           +  N++
Sbjct: 62  LRSNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 1e-05
 Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 5/142 (3%)

Query: 9   YKDRKNGEGATDCCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDL 68
              +     A  C  +  V   N     + +  +         L   L  P   L  L L
Sbjct: 317 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 376

Query: 69  TDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL-----THLSSLRSLNLFWN 123
            D  ++    +     L   ++L+ L+LS N   ++ +  L          L  L L+  
Sbjct: 377 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 436

Query: 124 RLEGSIDVKELDSLRDLEELDI 145
                ++ +     +D   L +
Sbjct: 437 YWSEEMEDRLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 1e-05
 Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 8/88 (9%)

Query: 89  NNLKMLNLSGNSFNN----SILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRD----L 140
           + L++L L+    ++    S+ ++L    SLR L+L  N L  +  ++ ++S+R     L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 141 EELDIGGNKIDKFVVSKGTTNTIKNANL 168
           E+L +      + +  +         +L
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 1e-04
 Identities = 14/74 (18%), Positives = 23/74 (31%)

Query: 54  ASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS 113
           A L    QQ + + L D  +      +    L     L  LNL  N   +  +  +    
Sbjct: 20  AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 79

Query: 114 SLRSLNLFWNRLEG 127
              S  +    L+ 
Sbjct: 80  QTPSCKIQKLSLQN 93

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 4e-06
 Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 27/106 (25%)

Query: 66  LDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSF--NNSILSSLTHLSSL-------- 115
           L L    +        +  L +L  +  L+LS N        L++L  L  L        
Sbjct: 3   LHLAHKDLTV------LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 56

Query: 116 -----------RSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKI 150
                      + L L  NRL+ S  ++ L S   L  L++ GN +
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 24/106 (22%), Positives = 34/106 (32%), Gaps = 22/106 (20%)

Query: 22  CQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEG 81
           C    V+CS+     +  DL                        LDL +NKI    + + 
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPD------------------TALLDLQNNKITEIKDGD- 50

Query: 82  IERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEG 127
                 L NL  L L  N  +     +   L  L  L L  N+L+ 
Sbjct: 51  ---FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 93

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 90  NLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNK 149
           +  +L+L  N           +L +L +L L  N++           L  LE L +  N+
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYLSKNQ 90

Query: 150 IDKF 153
           + + 
Sbjct: 91  LKEL 94

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 9/133 (6%)

Query: 21  CCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENE 80
                 +  S     V    L+D            +        S    +    +   NE
Sbjct: 216 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 275

Query: 81  GIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDL 140
                    +L+ LN+S    NN ++        L  L   +N L   +     +  ++L
Sbjct: 276 IRSLCDLPPSLEELNVS----NNKLIELPALPPRLERLIASFNHLA-EVP----ELPQNL 326

Query: 141 EELDIGGNKIDKF 153
           ++L +  N + +F
Sbjct: 327 KQLHVEYNPLREF 339

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 49  YWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSS 108
               + +      +L +L   DNKI        I  L+ L NL  ++L  N  ++  +S 
Sbjct: 161 AQVSDLTPLANLSKLTTLKADDNKI------SDISPLASLPNLIEVHLKNNQISD--VSP 212

Query: 109 LTHLSSLRSLNL 120
           L + S+L  + L
Sbjct: 213 LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 83  ERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDL 140
             L+ L+ L  L    N  ++  +S L  L +L  ++L  N++     +    +L  +
Sbjct: 167 TPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 5e-04
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 11/88 (12%)

Query: 68  LTDNKIASCVENEGIERLSRLNN--LKMLNLSGNSFNNSILSSL-----THLSSLRSLNL 120
           L D  +++      ++  S+L N  L+ L L  N      + +L       +  L  L L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 121 FWNRLEGSIDV----KELDSLRDLEELD 144
             NR     DV    +E+ S R   ELD
Sbjct: 310 NGNRFSEEDDVVDEIREVFSTRGRGELD 337

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 35.6 bits (80), Expect = 0.002
 Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 24/129 (18%)

Query: 21  CCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENE 80
                 ++    +  +   D   +  G    ++A        L++L L  N+I    E +
Sbjct: 233 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI----ELD 288

Query: 81  GIERL-----SRLNNLKMLNLSGNSFN--NSILSSLTHLSSLRSLNLFWNRLEGSIDVKE 133
            +  L      ++ +L  L L+GN F+  + ++  +  + S R                E
Sbjct: 289 AVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG-------------E 335

Query: 134 LDSLRDLEE 142
           LD L D+EE
Sbjct: 336 LDELDDMEE 344

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 6e-04
 Identities = 6/37 (16%), Positives = 16/37 (43%)

Query: 85  LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLF 121
               +   +L++S    ++     L +L  LR+ + +
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.003
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 21  CCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENE 80
                +   +   +     +L+ +       L   +F        LD++  +I S + + 
Sbjct: 161 NKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSY 219

Query: 81  GIERLSRLNNLKMLNLS 97
           G+E L +L      NL 
Sbjct: 220 GLENLKKLRARSTYNLK 236

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 8e-04
 Identities = 23/101 (22%), Positives = 33/101 (32%), Gaps = 2/101 (1%)

Query: 21  CCQWERVECSNTMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENE 80
             +  +              L      E  YL  +  T    L  L   D       +  
Sbjct: 110 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS 169

Query: 81  GIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLF 121
            I  L+ L  L+ L LS N  ++  L +L  L +L  L LF
Sbjct: 170 DIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 62  QLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSS-LTHLSSLRSLNL 120
           +L S  +   +      ++ +        ++ ++LS +    S L   L+  S L++L+L
Sbjct: 19  RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 78

Query: 121 FWNRLEGSIDVKELDSLRDLEELD 144
              RL   I V  L    +L  L+
Sbjct: 79  EGLRLSDPI-VNTLAKNSNLVRLN 101

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 7/78 (8%)

Query: 53  NASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL 112
            A+ +T   +   LDL   KI   +EN G    + L+    ++ S N      L     L
Sbjct: 10  QAAQYTNAVRDRELDLRGYKIPV-IENLG----ATLDQFDAIDFSDNEIRK--LDGFPLL 62

Query: 113 SSLRSLNLFWNRLEGSID 130
             L++L +  NR+    +
Sbjct: 63  RRLKTLLVNNNRICRIGE 80

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 13/49 (26%), Positives = 19/49 (38%)

Query: 89  NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSL 137
            +  +L+LS N      L++L   + L  LNL    L        L  L
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVL 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.83
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.58
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.57
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.57
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.53
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.47
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.46
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.39
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.39
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.36
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.34
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.33
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.31
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.28
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.24
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.19
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.18
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.13
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.01
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.68
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.55
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.37
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.34
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.33
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.32
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.29
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.13
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.95
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.8
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.5
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.67

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.83  E-value=9.4e-21  Score=146.04  Aligned_cols=162  Identities=20%  Similarity=0.314  Sum_probs=134.3

Q ss_pred             ccCCCCCCCCCCC--CceeEEecCC--CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCC-CcCCCcchhhhhhh
Q 038485           10 KDRKNGEGATDCC--QWERVECSNT--MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTD-NKIASCVENEGIER   84 (184)
Q Consensus        10 ~~~~~~~~~~~~c--~~~gv~c~~~--~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~-n~l~~~~p~~~~~~   84 (184)
                      .++.|.. +++||  .|.||.|.+.  ..+|++|+|+++.+.+...++. .+..+++|++|++++ |.+.+..|..    
T Consensus        23 ~l~sW~~-~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~-~l~~L~~L~~L~Ls~~N~l~g~iP~~----   96 (313)
T d1ogqa_          23 TLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPA----   96 (313)
T ss_dssp             GGTTCCT-TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGG----
T ss_pred             cCCCCCC-CCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCCh-HHhcCccccccccccccccccccccc----
Confidence            4788974 77888  5999999863  3379999999999986433454 458999999999997 8899888887    


Q ss_pred             hcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCcccccccc
Q 038485           85 LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIK  164 (184)
Q Consensus        85 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~  164 (184)
                      ++.+++|++|++++|.+.+..+..+..+..|+.+++++|.+.+.+|. .+..++.++.+++++|.+.+.+|..  +..+.
T Consensus        97 i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~-~l~~l~~L~~l~l~~n~l~~~ip~~--~~~l~  173 (313)
T d1ogqa_          97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIPDS--YGSFS  173 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCEEECCGG--GGCCC
T ss_pred             cccccccchhhhccccccccccccccchhhhcccccccccccccCch-hhccCcccceeeccccccccccccc--ccccc
Confidence            99999999999999999988888899999999999999999878887 8999999999999999999877632  23444


Q ss_pred             ce-eeccccccceeeEE
Q 038485          165 NA-NLYKLAGFFAIWFI  180 (184)
Q Consensus       165 ~L-~~~~l~~~~~~~~~  180 (184)
                      .+ ..++++.|++++..
T Consensus       174 ~l~~~l~~~~n~l~~~~  190 (313)
T d1ogqa_         174 KLFTSMTISRNRLTGKI  190 (313)
T ss_dssp             TTCCEEECCSSEEEEEC
T ss_pred             ccccccccccccccccc
Confidence            43 66777788877653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=3.3e-18  Score=123.17  Aligned_cols=129  Identities=22%  Similarity=0.331  Sum_probs=112.5

Q ss_pred             CCCCCCceeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCC
Q 038485           18 ATDCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL   88 (184)
Q Consensus        18 ~~~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l   88 (184)
                      ..+.|++..|.|.+.         +..+++|+|++|.++.  .++...|..+++|+.|++++|.+....+..    +..+
T Consensus         4 ~~C~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~--~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~----~~~~   77 (192)
T d1w8aa_           4 AMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGR--ISSDGLFGRLPHLVKLELKRNQLTGIEPNA----FEGA   77 (192)
T ss_dssp             TTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCS--BCCSCSGGGCTTCCEEECCSSCCCCBCTTT----TTTC
T ss_pred             CCCEEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcc--cccccccCCCceEeeeeccccccccccccc----cccc
Confidence            456678999999752         3578999999999975  366777889999999999999999888777    8999


Q ss_pred             CCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcc
Q 038485           89 NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKF  153 (184)
Q Consensus        89 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~  153 (184)
                      ++|++|++++|.+....+..|.++++|++|++++|+++ .++.+.|..+++|+++++++|++...
T Consensus        78 ~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~-~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             cccceeeeccccccccCHHHHhCCCcccccccCCcccc-ccCHHHhcCCcccccccccccccccc
Confidence            99999999999999777778999999999999999998 77776899999999999999998754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=3.8e-16  Score=112.21  Aligned_cols=128  Identities=20%  Similarity=0.214  Sum_probs=110.3

Q ss_pred             EEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcc-hhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCC
Q 038485           37 IALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCV-ENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSL  115 (184)
Q Consensus        37 ~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L  115 (184)
                      ++++.++++++.   +|...+   .++++|++++|.++... +..    |..+++|+.|++++|.+....+..+..+++|
T Consensus        11 ~~v~Cs~~~L~~---iP~~lp---~~l~~L~Ls~N~i~~~~~~~~----f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L   80 (192)
T d1w8aa_          11 TTVDCTGRGLKE---IPRDIP---LHTTELLLNDNELGRISSDGL----FGRLPHLVKLELKRNQLTGIEPNAFEGASHI   80 (192)
T ss_dssp             TEEECTTSCCSS---CCSCCC---TTCSEEECCSCCCCSBCCSCS----GGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CEEEEeCCCcCc---cCCCCC---CCCCEEEeCCCCCcccccccc----cCCCceEeeeecccccccccccccccccccc
Confidence            478999999997   776543   68999999999998644 343    7889999999999999998888899999999


Q ss_pred             cEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485          116 RSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       116 ~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      +.|++++|+++ .++...|..+++|++|++++|++++.++  ..|..+.+|..+++.+|.+.
T Consensus        81 ~~L~Ls~N~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~--~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          81 QELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMP--GSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CEEECCSCCCC-EECSSSSTTCTTCCEEECCSSCCCEECT--TSSTTCTTCCEEECTTCCBC
T ss_pred             ceeeecccccc-ccCHHHHhCCCcccccccCCccccccCH--HHhcCCcccccccccccccc
Confidence            99999999998 7777689999999999999999998766  55667888888899988764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.5e-14  Score=107.43  Aligned_cols=111  Identities=23%  Similarity=0.192  Sum_probs=62.4

Q ss_pred             CCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCC
Q 038485           58 TPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSL  137 (184)
Q Consensus        58 ~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~  137 (184)
                      ..+++|++|+++++.+....+..    +..+.+++.+++++|.+....+..+..++.++.+++++|+++ .++...+..+
T Consensus        97 ~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~-~~~~~~~~~l  171 (266)
T d1p9ag_          97 QTLPALTVLDVSFNRLTSLPLGA----LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL  171 (266)
T ss_dssp             TTCTTCCEEECCSSCCCCCCSST----TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTC
T ss_pred             ccccccccccccccccceeeccc----cccccccccccccccccceeccccccccccchhccccccccc-ccCccccccc
Confidence            34444444444444444333333    444555555555555555443444556667777777777776 4554456677


Q ss_pred             CCCcEEECCCCCCCccccCccccccccceeeccccccce
Q 038485          138 RDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFA  176 (184)
Q Consensus       138 ~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~  176 (184)
                      ++|++|++++|+++..++...   .+++|..+++++|..
T Consensus       172 ~~L~~L~Ls~N~L~~lp~~~~---~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         172 ENLDTLLLQENSLYTIPKGFF---GSHLLPFAFLHGNPW  207 (266)
T ss_dssp             TTCCEEECCSSCCCCCCTTTT---TTCCCSEEECCSCCB
T ss_pred             cccceeecccCCCcccChhHC---CCCCCCEEEecCCCC
Confidence            777777777777775433222   355556666666643

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.1e-14  Score=110.27  Aligned_cols=135  Identities=23%  Similarity=0.279  Sum_probs=107.5

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.+..   +....+....+|+.+++++|.++...+..    |..+++|+.+++++|.+....+..+..+
T Consensus       104 l~~L~~L~l~~n~~~~---~~~~~~~~~~~L~~l~l~~N~l~~i~~~~----f~~~~~L~~L~l~~N~l~~l~~~~f~~l  176 (284)
T d1ozna_         104 LGRLHTLHLDRCGLQE---LGPGLFRGLAALQYLYLQDNALQALPDDT----FRDLGNLTHLFLHGNRISSVPERAFRGL  176 (284)
T ss_dssp             CTTCCEEECTTSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             cccCCEEecCCccccc---ccccccchhcccchhhhccccccccChhH----hccccchhhcccccCcccccchhhhccc
Confidence            4678888888888876   66677778888888999998888766665    7788888899999988886667788888


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      ++|+.+++++|.+++ ++...|..+++|++|++++|.+.+.++  ..+..+.+|+.+++++|.+.
T Consensus       177 ~~L~~l~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~i~~~~~--~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         177 HSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPT--EALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCH--HHHTTCTTCCEEECCSSCEE
T ss_pred             cccchhhhhhccccc-cChhHhhhhhhcccccccccccccccc--cccccccccCEEEecCCCCC
Confidence            889999999888884 433478888889999999999888665  44556777788888888764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.2e-15  Score=110.75  Aligned_cols=133  Identities=20%  Similarity=0.236  Sum_probs=91.0

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      +..+++|+|++|.+..   ++...|..+++|++|++++|.++.. +.     +..+++|+.|++++|.+.. .+..+..+
T Consensus        30 p~~l~~L~Ls~N~i~~---l~~~~f~~l~~L~~L~L~~N~l~~l-~~-----~~~l~~L~~L~Ls~N~l~~-~~~~~~~l   99 (266)
T d1p9ag_          30 PKDTTILHLSENLLYT---FSLATLMPYTRLTQLNLDRAELTKL-QV-----DGTLPVLGTLDLSHNQLQS-LPLLGQTL   99 (266)
T ss_dssp             CTTCCEEECTTSCCSE---EEGGGGTTCTTCCEEECTTSCCCEE-EC-----CSCCTTCCEEECCSSCCSS-CCCCTTTC
T ss_pred             CcCCCEEECcCCcCCC---cCHHHhhcccccccccccccccccc-cc-----ccccccccccccccccccc-cccccccc
Confidence            3568888888888886   7777778888888888888888743 22     5667777777777777662 34444445


Q ss_pred             CCCcEEeCC------------------------CccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceee
Q 038485          113 SSLRSLNLF------------------------WNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANL  168 (184)
Q Consensus       113 ~~L~~L~l~------------------------~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~  168 (184)
                      ++|+.++++                        +|.++ .++...+..++.++.+++++|++++.++  ..+..+++|+.
T Consensus       100 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l~~~~~--~~~~~l~~L~~  176 (266)
T d1p9ag_         100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPA--GLLNGLENLDT  176 (266)
T ss_dssp             TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCT--TTTTTCTTCCE
T ss_pred             cccccccccccccceeeccccccccccccccccccccc-eeccccccccccchhcccccccccccCc--cccccccccce
Confidence            555555555                        44444 4444455667778888888888877655  34556777888


Q ss_pred             ccccccceee
Q 038485          169 YKLAGFFAIW  178 (184)
Q Consensus       169 ~~l~~~~~~~  178 (184)
                      +++++|+++.
T Consensus       177 L~Ls~N~L~~  186 (266)
T d1p9ag_         177 LLLQENSLYT  186 (266)
T ss_dssp             EECCSSCCCC
T ss_pred             eecccCCCcc
Confidence            8888888763

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.3e-14  Score=109.83  Aligned_cols=140  Identities=18%  Similarity=0.120  Sum_probs=92.6

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhh---------------------hhhhcCCCCC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEG---------------------IERLSRLNNL   91 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~---------------------~~~~~~l~~L   91 (184)
                      +..+++|+|++|.++.   +++..|.++++|+++++++|.+....+...                     +..|..+++|
T Consensus        31 p~~~~~L~Ls~N~i~~---i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L  107 (284)
T d1ozna_          31 PAASQRIFLHGNRISH---VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (284)
T ss_dssp             CTTCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCCCEEECcCCcCCC---CCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccC
Confidence            3467889999998886   777778888888888888887754322221                     1225666777


Q ss_pred             cEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccc
Q 038485           92 KMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKL  171 (184)
Q Consensus        92 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l  171 (184)
                      +++++++|.+....+..+....+|+.+++++|.++ .++...+..++.|++|++++|++++.++  ..+..+++|..+++
T Consensus       108 ~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~N~l~~l~~--~~f~~l~~L~~l~l  184 (284)
T d1ozna_         108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLL  184 (284)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEEC
T ss_pred             CEEecCCcccccccccccchhcccchhhhcccccc-ccChhHhccccchhhcccccCcccccch--hhhccccccchhhh
Confidence            77777777776444555666667777777777776 5554456666677777777777766544  34445666666666


Q ss_pred             cccceee
Q 038485          172 AGFFAIW  178 (184)
Q Consensus       172 ~~~~~~~  178 (184)
                      ..|.+++
T Consensus       185 ~~N~l~~  191 (284)
T d1ozna_         185 HQNRVAH  191 (284)
T ss_dssp             CSSCCCE
T ss_pred             hhccccc
Confidence            6666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8.3e-15  Score=102.50  Aligned_cols=127  Identities=22%  Similarity=0.177  Sum_probs=98.6

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|+|++|.++.   ++ ..+..+++|+.|++++|.+... +.     +..+++|++|++++|.++...+..+..+
T Consensus        17 ~~~lr~L~L~~n~I~~---i~-~~~~~l~~L~~L~Ls~N~i~~l-~~-----~~~l~~L~~L~ls~N~i~~l~~~~~~~l   86 (162)
T d1a9na_          17 AVRDRELDLRGYKIPV---IE-NLGATLDQFDAIDFSDNEIRKL-DG-----FPLLRRLKTLLVNNNRICRIGEGLDQAL   86 (162)
T ss_dssp             TTSCEEEECTTSCCCS---CC-CGGGGTTCCSEEECCSSCCCEE-CC-----CCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             cCcCcEEECCCCCCCc---cC-ccccccccCCEEECCCCCCCcc-CC-----cccCcchhhhhcccccccCCCccccccc
Confidence            4578999999999997   54 4457789999999999999854 33     8899999999999999995545556789


Q ss_pred             CCCcEEeCCCccccCcccH-hhhcCCCCCcEEECCCCCCCccccC-ccccccccceeecc
Q 038485          113 SSLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNKIDKFVVS-KGTTNTIKNANLYK  170 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~l~~~~~~-~~~~~~l~~L~~~~  170 (184)
                      ++|++|++++|.++ .++. ..+..+++|+++++++|+++..+.. ...+..+.+|.++|
T Consensus        87 ~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          87 PDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             TTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccceecccccc-ccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            99999999999998 5542 3578899999999999999765321 11233444555444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=2.5e-14  Score=95.69  Aligned_cols=105  Identities=26%  Similarity=0.301  Sum_probs=88.2

Q ss_pred             EEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCc
Q 038485           37 IALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLR  116 (184)
Q Consensus        37 ~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~  116 (184)
                      +.|++++|.++.   ++.  +..+.+|++|++++|.+... |+.    +..+++|+.+++++|.++. +| .+..+++|+
T Consensus         1 R~L~Ls~n~l~~---l~~--l~~l~~L~~L~ls~N~l~~l-p~~----~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~   68 (124)
T d1dcea3           1 RVLHLAHKDLTV---LCH--LEQLLLVTHLDLSHNRLRAL-PPA----LAALRCLEVLQASDNALEN-VD-GVANLPRLQ   68 (124)
T ss_dssp             SEEECTTSCCSS---CCC--GGGGTTCCEEECCSSCCCCC-CGG----GGGCTTCCEEECCSSCCCC-CG-GGTTCSSCC
T ss_pred             CEEEcCCCCCCC---Ccc--cccCCCCCEEECCCCccCcc-hhh----hhhhhcccccccccccccc-cC-ccccccccC
Confidence            478999999986   543  57889999999999999864 545    8899999999999999984 44 588999999


Q ss_pred             EEeCCCccccCcccH-hhhcCCCCCcEEECCCCCCCccc
Q 038485          117 SLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNKIDKFV  154 (184)
Q Consensus       117 ~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~l~~~~  154 (184)
                      ++++++|+++ .++. ..+..+++|+.+++++|++++..
T Consensus        69 ~L~l~~N~i~-~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          69 ELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             EEECCSSCCC-SSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             eEECCCCccC-CCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            9999999998 5542 36888999999999999997643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=2.6e-14  Score=95.59  Aligned_cols=104  Identities=23%  Similarity=0.255  Sum_probs=89.7

Q ss_pred             CEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEE
Q 038485           64 ESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEEL  143 (184)
Q Consensus        64 ~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L  143 (184)
                      +.|++++|.++.. +.     +..++.|+++++++|.++ .+|+.++.+++|+.+++++|.++ .++  .+..+++|+++
T Consensus         1 R~L~Ls~n~l~~l-~~-----l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~--~~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTVL-CH-----LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD--GVANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSSC-CC-----GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG--GGTTCSSCCEE
T ss_pred             CEEEcCCCCCCCC-cc-----cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC--ccccccccCeE
Confidence            5799999999854 33     788999999999999998 67888999999999999999998 676  58999999999


Q ss_pred             ECCCCCCCccccCccccccccceeeccccccceee
Q 038485          144 DIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       144 ~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      ++++|++++.+ ....+..+.+|..+++++|.++.
T Consensus        71 ~l~~N~i~~~~-~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          71 LLCNNRLQQSA-AIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             ECCSSCCCSSS-TTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ECCCCccCCCC-CchhhcCCCCCCEEECCCCcCCc
Confidence            99999998753 34556778889999999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.47  E-value=6e-13  Score=95.64  Aligned_cols=127  Identities=19%  Similarity=0.328  Sum_probs=97.5

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.++.   +++  +..+++|++|+++.|.+....+      +..++.|+.++++++....  ...+..+
T Consensus        61 l~nL~~L~Ls~N~l~~---~~~--l~~l~~L~~L~l~~n~~~~~~~------l~~l~~L~~L~l~~~~~~~--~~~~~~l  127 (199)
T d2omxa2          61 LNNLTQINFSNNQLTD---ITP--LKNLTKLVDILMNNNQIADITP------LANLTNLTGLTLFNNQITD--IDPLKNL  127 (199)
T ss_dssp             CTTCCEEECCSSCCCC---CGG--GTTCTTCCEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCCC--CGGGTTC
T ss_pred             CCCcCcCccccccccC---ccc--ccCCcccccccccccccccccc------ccccccccccccccccccc--ccccchh
Confidence            5678888888888876   443  5778888888888887765332      6788888888888887763  2347778


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF  179 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~  179 (184)
                      ++|+.+++++|++. .++  .+..+++++.+++.+|++++..+    +..+++|+.+++++|+++..
T Consensus       128 ~~L~~L~l~~n~l~-~~~--~l~~~~~L~~L~l~~n~l~~l~~----l~~l~~L~~L~ls~N~i~~i  187 (199)
T d2omxa2         128 TNLNRLELSSNTIS-DIS--ALSGLTSLQQLNFSSNQVTDLKP----LANLTTLERLDISSNKVSDI  187 (199)
T ss_dssp             TTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCC
T ss_pred             hhhHHhhhhhhhhc-ccc--cccccccccccccccccccCCcc----ccCCCCCCEEECCCCCCCCC
Confidence            88999999999887 554  57888899999999999887532    45677888888899988753

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.46  E-value=6.4e-14  Score=107.19  Aligned_cols=46  Identities=15%  Similarity=0.055  Sum_probs=27.9

Q ss_pred             hhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeEE
Q 038485          133 ELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWFI  180 (184)
Q Consensus       133 ~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~  180 (184)
                      .+..+++|+.|++++|++++.+|  ..+..+++|+.+++++|++++.+
T Consensus       239 ~~~~~~~L~~L~Ls~N~l~g~iP--~~l~~L~~L~~L~Ls~N~l~g~i  284 (313)
T d1ogqa_         239 KVGLSKNLNGLDLRNNRIYGTLP--QGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             GCCCCTTCCEEECCSSCCEECCC--GGGGGCTTCCEEECCSSEEEEEC
T ss_pred             ccccccccccccCccCeecccCC--hHHhCCCCCCEEECcCCcccccC
Confidence            35556666666666666666555  23445666666666666666543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.43  E-value=1.4e-12  Score=99.19  Aligned_cols=148  Identities=20%  Similarity=0.303  Sum_probs=105.7

Q ss_pred             CCCCCCceeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCC
Q 038485           18 ATDCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRL   88 (184)
Q Consensus        18 ~~~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l   88 (184)
                      .++.|.|+.+.|.+.         +..++.|++++|.++.   +++..|..+++|++|++++|.+....|..    |..+
T Consensus         6 ~~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~---l~~~~f~~l~~L~~L~l~~n~~~~i~~~~----f~~l   78 (305)
T d1xkua_           6 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE---IKDGDFKNLKNLHTLILINNKISKISPGA----FAPL   78 (305)
T ss_dssp             TTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC---BCTTTTTTCTTCCEEECCSSCCCCBCTTT----TTTC
T ss_pred             CCCEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCC---cChhHhhccccccccccccccccccchhh----hhCC
Confidence            567788999999752         4678999999999997   88888999999999999999999887777    8999


Q ss_pred             CCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceee
Q 038485           89 NNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANL  168 (184)
Q Consensus        89 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~  168 (184)
                      +.|+.+++++|.++ .+|..  ....+..+.+..|.+. .++...+.....++.++...|...........+..+++|+.
T Consensus        79 ~~L~~L~l~~n~l~-~l~~~--~~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~  154 (305)
T d1xkua_          79 VKLERLYLSKNQLK-ELPEK--MPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY  154 (305)
T ss_dssp             TTCCEEECCSSCCS-BCCSS--CCTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred             CccCEecccCCccC-cCccc--hhhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCc
Confidence            99999999999988 44432  2356777777777776 44443455555555555555544433333334444455555


Q ss_pred             ccccccce
Q 038485          169 YKLAGFFA  176 (184)
Q Consensus       169 ~~l~~~~~  176 (184)
                      ++++.+.+
T Consensus       155 l~l~~n~l  162 (305)
T d1xkua_         155 IRIADTNI  162 (305)
T ss_dssp             EECCSSCC
T ss_pred             cccccCCc
Confidence            55544443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.5e-13  Score=95.92  Aligned_cols=113  Identities=21%  Similarity=0.212  Sum_probs=94.3

Q ss_pred             CCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcC
Q 038485           57 FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDS  136 (184)
Q Consensus        57 ~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~  136 (184)
                      |.+..++++|++++|.++.. +..    +..+++|+.+++++|.++ .+ +.+..+++|+.|++++|.++ .++...+..
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~----~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~   85 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENL----GATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQA   85 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCG----GGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCC-EECSCHHHH
T ss_pred             ccCcCcCcEEECCCCCCCcc-Ccc----ccccccCCEEECCCCCCC-cc-CCcccCcchhhhhccccccc-CCCcccccc
Confidence            56778899999999999876 443    577899999999999998 44 45888999999999999998 676645778


Q ss_pred             CCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          137 LRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       137 ~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      +++|++|++++|+++.. +....+..+++|+.+++++|.++.
T Consensus        86 l~~L~~L~L~~N~i~~~-~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          86 LPDLTELILTNNSLVEL-GDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             CTTCCEEECCSCCCCCG-GGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             ccccccceecccccccc-ccccccccccccchhhcCCCcccc
Confidence            99999999999999874 334556778889999999998754

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.39  E-value=2.6e-12  Score=93.04  Aligned_cols=126  Identities=25%  Similarity=0.321  Sum_probs=80.2

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|++++|.++.   +++  +..+++|++|++++|+++.. +.     +..+++|+.+++++|.+..  ...+..+
T Consensus        67 l~~L~~L~L~~n~i~~---l~~--~~~l~~L~~L~l~~n~i~~l-~~-----l~~l~~L~~L~l~~~~~~~--~~~l~~l  133 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTD---IKP--LANLKNLGWLFLDENKVKDL-SS-----LKDLKKLKSLSLEHNGISD--INGLVHL  133 (210)
T ss_dssp             CTTCCEEECCSSCCCC---CGG--GTTCTTCCEEECCSSCCCCG-GG-----GTTCTTCCEEECTTSCCCC--CGGGGGC
T ss_pred             CCCCCEEeCCCccccC---ccc--cccCcccccccccccccccc-cc-----ccccccccccccccccccc--ccccccc
Confidence            5678888888887775   442  36677888888888887653 32     6677778888877777652  2345566


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceee
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIW  178 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~  178 (184)
                      +.++.+++++|.++ ..+  .+..+++|+++++++|++++..+    +..+++|+.+++++|+++.
T Consensus       134 ~~l~~l~~~~n~l~-~~~--~~~~l~~L~~l~l~~n~l~~i~~----l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         134 PQLESLYLGNNKIT-DIT--VLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             TTCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCB
T ss_pred             cccccccccccccc-ccc--ccccccccccccccccccccccc----ccCCCCCCEEECCCCCCCC
Confidence            66666666666665 332  35556667777777766665322    3345555566666666543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.39  E-value=2.6e-12  Score=97.64  Aligned_cols=133  Identities=24%  Similarity=0.202  Sum_probs=108.6

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ...++.+++.+|.+..   ++..   .+++++.|++++|......+..    +..++.++.+++++|.+.+..+..+..+
T Consensus       149 l~~L~~l~l~~n~l~~---l~~~---~~~~L~~L~l~~n~~~~~~~~~----~~~~~~l~~L~~s~n~l~~~~~~~~~~l  218 (305)
T d1xkua_         149 MKKLSYIRIADTNITT---IPQG---LPPSLTELHLDGNKITKVDAAS----LKGLNNLAKLGLSFNSISAVDNGSLANT  218 (305)
T ss_dssp             CTTCCEEECCSSCCCS---CCSS---CCTTCSEEECTTSCCCEECTGG----GTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             ccccCccccccCCccc---cCcc---cCCccCEEECCCCcCCCCChhH----hhcccccccccccccccccccccccccc
Confidence            4567888899888876   5543   3578999999999988877776    8899999999999999997778888899


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCc----cccccccceeecccccccee
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSK----GTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~----~~~~~l~~L~~~~l~~~~~~  177 (184)
                      ++|+.|++++|+++ .+|. .+..+++|++|++++|+++......    ..+..+.+|..+++.+|.+.
T Consensus       219 ~~L~~L~L~~N~L~-~lp~-~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         219 PHLRELHLNNNKLV-KVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TTCCEEECCSSCCS-SCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccceeeeccccccc-cccc-ccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            99999999999998 7886 7899999999999999998754322    23445677888888888874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.36  E-value=6.3e-12  Score=90.14  Aligned_cols=127  Identities=19%  Similarity=0.340  Sum_probs=103.6

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..++++|+++++.+..   +..  +..+++|++|++++|++++..+      +..+++|+.+++++|.+.. .+ .+..+
T Consensus        39 l~~l~~L~l~~~~i~~---l~~--l~~l~nL~~L~Ls~N~l~~~~~------l~~l~~L~~L~l~~n~~~~-~~-~l~~l  105 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS---IDG--VEYLNNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQIAD-IT-PLANL  105 (199)
T ss_dssp             HTTCCEEECTTSCCCC---CTT--GGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-CG-GGTTC
T ss_pred             hcCCCEEECCCCCCCC---ccc--cccCCCcCcCccccccccCccc------ccCCccccccccccccccc-cc-ccccc
Confidence            5689999999999986   432  4779999999999999987543      7899999999999999873 33 48899


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF  179 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~  179 (184)
                      +.|+.++++++... .++  .+..+++|+.+++++|++... +   .+..+++|..+++.+|+++++
T Consensus       106 ~~L~~L~l~~~~~~-~~~--~~~~l~~L~~L~l~~n~l~~~-~---~l~~~~~L~~L~l~~n~l~~l  165 (199)
T d2omxa2         106 TNLTGLTLFNNQIT-DID--PLKNLTNLNRLELSSNTISDI-S---ALSGLTSLQQLNFSSNQVTDL  165 (199)
T ss_dssp             TTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCCCC-G---GGTTCTTCSEEECCSSCCCCC
T ss_pred             cccccccccccccc-ccc--ccchhhhhHHhhhhhhhhccc-c---cccccccccccccccccccCC
Confidence            99999999999987 554  588899999999999998753 2   244566777777788877654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.34  E-value=9.5e-12  Score=89.98  Aligned_cols=127  Identities=24%  Similarity=0.286  Sum_probs=105.4

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ...++.|+++++.+..   +.+  +..+++|++|++++|.+++..+      +..+++|+.+++++|.+++ ++ .+..+
T Consensus        45 L~~L~~L~l~~~~i~~---l~~--l~~l~~L~~L~L~~n~i~~l~~------~~~l~~L~~L~l~~n~i~~-l~-~l~~l  111 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS---VQG--IQYLPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENKVKD-LS-SLKDL  111 (210)
T ss_dssp             HHTCCEEECTTSCCCC---CTT--GGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-GG-GGTTC
T ss_pred             hcCccEEECcCCCCCC---chh--HhhCCCCCEEeCCCccccCccc------cccCccccccccccccccc-cc-ccccc
Confidence            4578999999999986   443  5779999999999999987543      6889999999999999984 44 58889


Q ss_pred             CCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccccccceeeE
Q 038485          113 SSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAIWF  179 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~~~  179 (184)
                      ++|+.+++++|.+. .++  .+..++.++.+++++|.+.+..    ....+++|+.+++++|.++++
T Consensus       112 ~~L~~L~l~~~~~~-~~~--~l~~l~~l~~l~~~~n~l~~~~----~~~~l~~L~~l~l~~n~l~~i  171 (210)
T d1h6ta2         112 KKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDI  171 (210)
T ss_dssp             TTCCEEECTTSCCC-CCG--GGGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCC
T ss_pred             cccccccccccccc-ccc--cccccccccccccccccccccc----ccccccccccccccccccccc
Confidence            99999999999987 665  5888999999999999998642    334677888888899888754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.33  E-value=6e-12  Score=91.88  Aligned_cols=131  Identities=20%  Similarity=0.284  Sum_probs=89.5

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhH------
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSIL------  106 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p------  106 (184)
                      +.++++|++++|.+..   +.+  +..+++++++++++|.++.. +.     +..++.|+.+.++++...+..+      
T Consensus        62 l~~L~~L~ls~n~i~~---~~~--l~~l~~l~~l~~~~n~~~~i-~~-----l~~l~~L~~l~l~~~~~~~~~~~~~~~~  130 (227)
T d1h6ua2          62 LNNLIGLELKDNQITD---LAP--LKNLTKITELELSGNPLKNV-SA-----IAGLQSIKTLDLTSTQITDVTPLAGLSN  130 (227)
T ss_dssp             CTTCCEEECCSSCCCC---CGG--GTTCCSCCEEECCSCCCSCC-GG-----GTTCTTCCEEECTTSCCCCCGGGTTCTT
T ss_pred             CCCCcEeecCCceeec---ccc--cccccccccccccccccccc-cc-----ccccccccccccccccccccchhccccc
Confidence            6778888888888775   332  46677777777777776643 22     5666777777776665542211      


Q ss_pred             --------------HhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeecccc
Q 038485          107 --------------SSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLA  172 (184)
Q Consensus       107 --------------~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~  172 (184)
                                    ..+..+++|+.+++++|.+. ..+  .++.+++|+.|++++|++++.++    +..+++|+.++++
T Consensus       131 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~Ls~n~l~~l~~----l~~l~~L~~L~Ls  203 (227)
T d1h6ua2         131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS-DLT--PLANLSKLTTLKADDNKISDISP----LASLPNLIEVHLK  203 (227)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECT
T ss_pred             hhhhhchhhhhchhhhhccccccccccccccccc-cch--hhcccccceecccCCCccCCChh----hcCCCCCCEEECc
Confidence                          23455677888888888876 443  47788889999999998876432    4556777888888


Q ss_pred             ccceeeEEE
Q 038485          173 GFFAIWFII  181 (184)
Q Consensus       173 ~~~~~~~~~  181 (184)
                      +|+++.+.+
T Consensus       204 ~N~lt~i~~  212 (227)
T d1h6ua2         204 NNQISDVSP  212 (227)
T ss_dssp             TSCCCBCGG
T ss_pred             CCcCCCCcc
Confidence            888876543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.31  E-value=9.4e-12  Score=96.68  Aligned_cols=112  Identities=25%  Similarity=0.397  Sum_probs=63.3

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhh----------------hhhhcCCCCCcEEEC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEG----------------IERLSRLNNLKMLNL   96 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~----------------~~~~~~l~~L~~L~l   96 (184)
                      ...++.|++++|.+..   +++  +..+++|+.++++++.+.+..+-..                ...+..++.++.+++
T Consensus       240 l~~L~~L~l~~n~l~~---~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~l  314 (384)
T d2omza2         240 LTNLTDLDLANNQISN---LAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL  314 (384)
T ss_dssp             CTTCSEEECCSSCCCC---CGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEEC
T ss_pred             ccccchhccccCccCC---CCc--ccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEEC
Confidence            5677888888887775   332  4667777777777777765432100                001344455555555


Q ss_pred             CCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccc
Q 038485           97 SGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFV  154 (184)
Q Consensus        97 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~  154 (184)
                      ++|.+++..  .+..+++|+.|++++|+++ .++  .+..+++|++|++++|++++.+
T Consensus       315 s~n~l~~l~--~l~~l~~L~~L~L~~n~l~-~l~--~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         315 YFNNISDIS--PVSSLTKLQRLFFANNKVS-DVS--SLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             CSSCCSCCG--GGGGCTTCCEEECCSSCCC-CCG--GGGGCTTCCEEECCSSCCCBCG
T ss_pred             CCCCCCCCc--ccccCCCCCEEECCCCCCC-CCh--hHcCCCCCCEEECCCCcCCCCh
Confidence            555555321  2455556666666666555 343  3555566666666666665543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.7e-11  Score=84.81  Aligned_cols=89  Identities=22%  Similarity=0.315  Sum_probs=73.8

Q ss_pred             CCCCCCCCEEeCCCC-cCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhc
Q 038485           57 FTPFQQLESLDLTDN-KIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELD  135 (184)
Q Consensus        57 ~~~l~~L~~L~ls~n-~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~  135 (184)
                      +..+++++.|++.+| .++...+..    |..+++|+.|++++|.++...+..|..+++|+.|++++|+++ .++.+.+.
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~  101 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQ  101 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTC
T ss_pred             ccCccccCeeecCCCccccccCchh----hccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhc
Confidence            467789999999766 477666666    889999999999999999776888999999999999999998 78774554


Q ss_pred             CCCCCcEEECCCCCCC
Q 038485          136 SLRDLEELDIGGNKID  151 (184)
Q Consensus       136 ~~~~L~~L~ls~N~l~  151 (184)
                       ...|++|++++|++.
T Consensus       102 -~~~l~~L~L~~Np~~  116 (156)
T d2ifga3         102 -GLSLQELVLSGNPLH  116 (156)
T ss_dssp             -SCCCCEEECCSSCCC
T ss_pred             -cccccccccCCCccc
Confidence             446999999999985

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.24  E-value=2.1e-11  Score=94.61  Aligned_cols=132  Identities=23%  Similarity=0.339  Sum_probs=104.0

Q ss_pred             CCCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhH-----
Q 038485           32 TMSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSIL-----  106 (184)
Q Consensus        32 ~~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p-----  106 (184)
                      ...++++|++++|.+..   ++  .+..+++|+.+++++|.+++..+      +..+++|+.++++++.+.+..+     
T Consensus       217 ~~~~L~~L~l~~n~l~~---~~--~l~~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~~~l~~~~~~~~~~  285 (384)
T d2omza2         217 ILTNLDELSLNGNQLKD---IG--TLASLTNLTDLDLANNQISNLAP------LSGLTKLTELKLGANQISNISPLAGLT  285 (384)
T ss_dssp             GCTTCCEEECCSSCCCC---CG--GGGGCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred             ccCCCCEEECCCCCCCC---cc--hhhcccccchhccccCccCCCCc------ccccccCCEeeccCcccCCCCcccccc
Confidence            35789999999999886   43  35778999999999999987554      6788899999998887764221     


Q ss_pred             ---------------HhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceeeccc
Q 038485          107 ---------------SSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKL  171 (184)
Q Consensus       107 ---------------~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l  171 (184)
                                     ..+..+++++.+++++|+++ .++  .+..+++|++|++++|++++. +   .+..+++|+.+++
T Consensus       286 ~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~-~l~--~l~~l~~L~~L~L~~n~l~~l-~---~l~~l~~L~~L~l  358 (384)
T d2omza2         286 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS-DIS--PVSSLTKLQRLFFANNKVSDV-S---SLANLTNINWLSA  358 (384)
T ss_dssp             TCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCS-CCG--GGGGCTTCCEEECCSSCCCCC-G---GGGGCTTCCEEEC
T ss_pred             ccccccccccccccccccchhcccCeEECCCCCCC-CCc--ccccCCCCCEEECCCCCCCCC-h---hHcCCCCCCEEEC
Confidence                           23556788899999999988 554  478899999999999999863 2   3567888899999


Q ss_pred             cccceeeEEE
Q 038485          172 AGFFAIWFII  181 (184)
Q Consensus       172 ~~~~~~~~~~  181 (184)
                      ++|++++.++
T Consensus       359 ~~N~l~~l~~  368 (384)
T d2omza2         359 GHNQISDLTP  368 (384)
T ss_dssp             CSSCCCBCGG
T ss_pred             CCCcCCCChh
Confidence            9999887543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.1e-10  Score=80.47  Aligned_cols=107  Identities=17%  Similarity=0.171  Sum_probs=83.5

Q ss_pred             CCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCC-CCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCC
Q 038485           61 QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGN-SFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRD  139 (184)
Q Consensus        61 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n-~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~  139 (184)
                      ...+.++.+++.+.. .|..    +..+++++.+++.++ .++...+..|..+++|+.|++++|+++ .++...|..+++
T Consensus         8 ~~~~~l~c~~~~~~~-~p~~----l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~   81 (156)
T d2ifga3           8 HGSSGLRCTRDGALD-SLHH----LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR   81 (156)
T ss_dssp             SSSSCEECCSSCCCT-TTTT----SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSC
T ss_pred             CCCCeEEecCCCCcc-Cccc----ccCccccCeeecCCCccccccCchhhccccccCcceeeccccC-Cccccccccccc
Confidence            344556777766654 3444    788899999999866 588666788999999999999999998 787668999999


Q ss_pred             CcEEECCCCCCCccccCccccccccceeeccccccce
Q 038485          140 LEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFA  176 (184)
Q Consensus       140 L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~  176 (184)
                      |++|++++|+++..++....  .+ .|..+++++|.+
T Consensus        82 L~~L~Ls~N~l~~l~~~~~~--~~-~l~~L~L~~Np~  115 (156)
T d2ifga3          82 LSRLNLSFNALESLSWKTVQ--GL-SLQELVLSGNPL  115 (156)
T ss_dssp             CCEEECCSSCCSCCCSTTTC--SC-CCCEEECCSSCC
T ss_pred             ccceeccCCCCcccChhhhc--cc-cccccccCCCcc
Confidence            99999999999976664433  23 466777787765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.18  E-value=1.7e-10  Score=84.00  Aligned_cols=79  Identities=27%  Similarity=0.367  Sum_probs=62.7

Q ss_pred             hcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCcccccccc
Q 038485           85 LSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIK  164 (184)
Q Consensus        85 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~  164 (184)
                      +..+++|+.+++++|.+.+.  ..+..+++|+.|++++|+++ .++  .+..+++|++|++++|++++.++    +..++
T Consensus       147 ~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~-~l~--~l~~l~~L~~L~Ls~N~lt~i~~----l~~l~  217 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKIS-DIS--PLASLPNLIEVHLKNNQISDVSP----LANTS  217 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-CCG--GGGGCTTCCEEECTTSCCCBCGG----GTTCT
T ss_pred             hccccccccccccccccccc--hhhcccccceecccCCCccC-CCh--hhcCCCCCCEEECcCCcCCCCcc----cccCC
Confidence            56778899999999998743  34788999999999999998 665  48899999999999999997643    33455


Q ss_pred             ceeecccc
Q 038485          165 NANLYKLA  172 (184)
Q Consensus       165 ~L~~~~l~  172 (184)
                      +|..++++
T Consensus       218 ~L~~L~ls  225 (227)
T d1h6ua2         218 NLFIVTLT  225 (227)
T ss_dssp             TCCEEEEE
T ss_pred             CCCEEEee
Confidence            55555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=3.6e-13  Score=96.99  Aligned_cols=111  Identities=24%  Similarity=0.274  Sum_probs=89.3

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ..+++.|++++|.+..   ++  .+..+++|++|++++|.+... +..    ...++.|+.|++++|.++. + +.+..+
T Consensus        47 L~~L~~L~Ls~n~I~~---i~--~l~~l~~L~~L~Ls~N~i~~i-~~~----~~~~~~L~~L~l~~N~i~~-l-~~~~~l  114 (198)
T d1m9la_          47 LKACKHLALSTNNIEK---IS--SLSGMENLRILSLGRNLIKKI-ENL----DAVADTLEELWISYNQIAS-L-SGIEKL  114 (198)
T ss_dssp             TTTCCEEECSEEEESC---CC--CHHHHTTCCEEECCEEEECSC-SSH----HHHHHHCCEEECSEEECCC-H-HHHHHH
T ss_pred             ccccceeECcccCCCC---cc--cccCCccccChhhcccccccc-ccc----ccccccccccccccccccc-c-cccccc
Confidence            6678999999999886   54  257889999999999999854 332    3445689999999999984 3 457788


Q ss_pred             CCCcEEeCCCccccCcccH-hhhcCCCCCcEEECCCCCCCccccC
Q 038485          113 SSLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNKIDKFVVS  156 (184)
Q Consensus       113 ~~L~~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~l~~~~~~  156 (184)
                      ++|+.|++++|.++ .++. ..+..+++|+.|++++|++....+.
T Consensus       115 ~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         115 VNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             ccccccccccchhc-cccccccccCCCccceeecCCCccccCccc
Confidence            99999999999998 5542 3688999999999999998776554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=7.8e-11  Score=86.33  Aligned_cols=126  Identities=17%  Similarity=0.229  Sum_probs=90.5

Q ss_pred             CCCCceeEEecCC---------CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCC
Q 038485           20 DCCQWERVECSNT---------MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNN   90 (184)
Q Consensus        20 ~~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~   90 (184)
                      +.|+...+.|...         +..+++|++++|.+..   ++...|.++++|++|++++|.+....+..   +|..++.
T Consensus         6 C~C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~---l~~~~f~~l~~L~~L~ls~n~~~~~i~~~---~f~~l~~   79 (242)
T d1xwdc1           6 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV---IQKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLPK   79 (242)
T ss_dssp             EEECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCE---ECTTTTTTCTTCCEEEEESCTTCCEECSS---SEESCTT
T ss_pred             CCCcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCc---cChhHhhccchhhhhhhccccccceeecc---ccccccc
Confidence            5577788888641         3478999999999987   88888999999999999999887654432   1778888


Q ss_pred             CcEEECC-CCCCCchhHHhhccCCCCcEEeCCCccccCcccH-hhhcCCCCCcEEECCCCCCCc
Q 038485           91 LKMLNLS-GNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV-KELDSLRDLEELDIGGNKIDK  152 (184)
Q Consensus        91 L~~L~l~-~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~-~~~~~~~~L~~L~ls~N~l~~  152 (184)
                      ++.+.+. .+.+....+..+..+++|+++++++|.+. ..+. ..+..+..+..+...++.+..
T Consensus        80 l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~  142 (242)
T d1xwdc1          80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHT  142 (242)
T ss_dssp             CCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCE
T ss_pred             cccccccccccccccccccccccccccccccchhhhc-cccccccccccccccccccccccccc
Confidence            8888865 46677666777888999999999998886 3332 112233444444445555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.01  E-value=7.3e-13  Score=95.34  Aligned_cols=110  Identities=23%  Similarity=0.315  Sum_probs=89.5

Q ss_pred             CCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccHhhhcC
Q 038485           57 FTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDVKELDS  136 (184)
Q Consensus        57 ~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~  136 (184)
                      +..+++|++|++++|.++.. +.     +..+++|+.|++++|.+. .+|.....++.|+.|++++|.++ .++  .+..
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i-~~-----l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~--~~~~  113 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKI-SS-----LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS--GIEK  113 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCC-CC-----HHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH--HHHH
T ss_pred             HhcccccceeECcccCCCCc-cc-----ccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc--cccc
Confidence            57789999999999999865 32     788999999999999998 45555555678999999999998 664  5888


Q ss_pred             CCCCcEEECCCCCCCccccCccccccccceeecccccccee
Q 038485          137 LRDLEELDIGGNKIDKFVVSKGTTNTIKNANLYKLAGFFAI  177 (184)
Q Consensus       137 ~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~~~l~~~~~~  177 (184)
                      +++|+.|++++|++++.. ....+..+.+|+.+++++|.+.
T Consensus       114 l~~L~~L~L~~N~i~~~~-~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWG-EIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHSSEEEESEEECCCHH-HHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccccccchhcccc-ccccccCCCccceeecCCCccc
Confidence            999999999999998742 2345567888888888988764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.9e-09  Score=77.71  Aligned_cols=81  Identities=17%  Similarity=0.103  Sum_probs=56.7

Q ss_pred             CCcEEECCCCCCCchhHHhhccCCCCcEE-eCCCccccCcccHhhhcCCCCCcEEECCCCCCCccccCccccccccceee
Q 038485           90 NLKMLNLSGNSFNNSILSSLTHLSSLRSL-NLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVVSKGTTNTIKNANL  168 (184)
Q Consensus        90 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L-~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~l~~L~~  168 (184)
                      .+..+++.+|.++. ++.......+++.+ .+.+|.++ .++...|..+++|+.|++++|+++..++  ..+..+++|+.
T Consensus       154 ~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~--~~~~~l~~L~~  229 (242)
T d1xwdc1         154 ESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRA  229 (242)
T ss_dssp             SCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCS--SSCTTCCEEES
T ss_pred             cceeeecccccccc-cccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccCH--HHHcCCccccc
Confidence            56778888888874 33333344555444 56777887 7877568889999999999999987654  45667777777


Q ss_pred             cccccc
Q 038485          169 YKLAGF  174 (184)
Q Consensus       169 ~~l~~~  174 (184)
                      +++...
T Consensus       230 l~~~~l  235 (242)
T d1xwdc1         230 RSTYNL  235 (242)
T ss_dssp             SSEESS
T ss_pred             CcCCCC
Confidence            766543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.68  E-value=8.7e-08  Score=72.63  Aligned_cols=100  Identities=22%  Similarity=0.221  Sum_probs=78.1

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCC
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLS  113 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~  113 (184)
                      .++++|+++++.++.   +|.    ..++|++|++++|+++. .|.       .+.+|+.|++.+|.++ .++.   ..+
T Consensus        38 ~~l~~LdLs~~~L~~---lp~----~~~~L~~L~Ls~N~l~~-lp~-------~~~~L~~L~l~~n~l~-~l~~---lp~   98 (353)
T d1jl5a_          38 RQAHELELNNLGLSS---LPE----LPPHLESLVASCNSLTE-LPE-------LPQSLKSLLVDNNNLK-ALSD---LPP   98 (353)
T ss_dssp             HTCSEEECTTSCCSC---CCS----CCTTCSEEECCSSCCSS-CCC-------CCTTCCEEECCSSCCS-CCCS---CCT
T ss_pred             cCCCEEEeCCCCCCC---CCC----CCCCCCEEECCCCCCcc-ccc-------chhhhhhhhhhhcccc-hhhh---hcc
Confidence            467899999999987   663    25789999999999984 443       2468899999999887 3332   124


Q ss_pred             CCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcccc
Q 038485          114 SLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVV  155 (184)
Q Consensus       114 ~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~  155 (184)
                      .|++|++++|.+. .+|.  ++.++.|++++++++.+...+.
T Consensus        99 ~L~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~~~~~~~~~  137 (353)
T d1jl5a_          99 LLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKKLPD  137 (353)
T ss_dssp             TCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSCCCC
T ss_pred             ccccccccccccc-cccc--hhhhccceeecccccccccccc
Confidence            6999999999998 7874  6788999999999998876543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=7.5e-09  Score=81.20  Aligned_cols=116  Identities=21%  Similarity=0.218  Sum_probs=84.6

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhh----
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSL----  109 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~----  109 (184)
                      .++++||++++.++...  -...+..+++++.|++++|.++......+..++...++|++|++++|.+++.....+    
T Consensus         2 ~~l~~ld~~~~~i~~~~--~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCCCCHHH--HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCcCChHH--HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            36899999999998621  122235578899999999988754444444457889999999999999874333333    


Q ss_pred             c-cCCCCcEEeCCCccccCc----ccHhhhcCCCCCcEEECCCCCCCc
Q 038485          110 T-HLSSLRSLNLFWNRLEGS----IDVKELDSLRDLEELDIGGNKIDK  152 (184)
Q Consensus       110 ~-~l~~L~~L~l~~n~~~~~----l~~~~~~~~~~L~~L~ls~N~l~~  152 (184)
                      . ...+|+.|++++|.+++.    ++. .+..+++|++|++++|.+.+
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~-~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHH
T ss_pred             hcCCCCCCEEECCCCCccccccccccc-hhhccccccccccccccchh
Confidence            2 235799999999998732    222 56788999999999998865

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.1e-07  Score=71.15  Aligned_cols=35  Identities=17%  Similarity=0.147  Sum_probs=17.3

Q ss_pred             CceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCC
Q 038485           34 SRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDN   71 (184)
Q Consensus        34 ~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n   71 (184)
                      +++++|+++++.+..   .....+..+++|++|+++++
T Consensus        71 ~~L~~L~L~~~~l~~---~~~~~l~~~~~L~~L~Ls~c  105 (284)
T d2astb2          71 SKLQNLSLEGLRLSD---PIVNTLAKNSNLVRLNLSGC  105 (284)
T ss_dssp             CCCSEEECTTCBCCH---HHHHHHTTCTTCSEEECTTC
T ss_pred             CCcccccccccCCCc---HHHHHHhcCCCCcCcccccc
Confidence            445555555555443   11222344556666666653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.44  E-value=1.8e-07  Score=71.51  Aligned_cols=145  Identities=18%  Similarity=0.123  Sum_probs=80.7

Q ss_pred             CCceEEEecCCCCCCcccc-ccCccCCCCCCCCEEeCCCCcCCCcchh-hhhhhhcCCCCCcEEECCCCCCCch----hH
Q 038485           33 MSRVIALDLSDTYGGEYWY-LNASLFTPFQQLESLDLTDNKIASCVEN-EGIERLSRLNNLKMLNLSGNSFNNS----IL  106 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~~~~~l~~L~~L~l~~n~~~~~----~p  106 (184)
                      ...++.+++++|.+...+. .-...+..+..++.++++.|.+...... .....+...++|+.|++++|.++..    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            4567777777777654111 1112234456778888888776532111 1122255667788888888777543    23


Q ss_pred             HhhccCCCCcEEeCCCccccCcccH---hhhcC--CCCCcEEECCCCCCCccccC-c-ccc-ccccceeecccccccee
Q 038485          107 SSLTHLSSLRSLNLFWNRLEGSIDV---KELDS--LRDLEELDIGGNKIDKFVVS-K-GTT-NTIKNANLYKLAGFFAI  177 (184)
Q Consensus       107 ~~~~~l~~L~~L~l~~n~~~~~l~~---~~~~~--~~~L~~L~ls~N~l~~~~~~-~-~~~-~~l~~L~~~~l~~~~~~  177 (184)
                      ..+..++.|+.|++++|.+.+.-..   ..+..  .+.|++|++++|++...... . ..+ .....|+.+++++|++.
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            4456677788888888877532111   02222  35678888888877652111 0 111 12345666677777764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.37  E-value=1.7e-07  Score=71.58  Aligned_cols=116  Identities=16%  Similarity=0.105  Sum_probs=63.6

Q ss_pred             CCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchh-----HHhhccCCCCcEEeCCCccccCc----ccH
Q 038485           61 QQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSI-----LSSLTHLSSLRSLNLFWNRLEGS----IDV  131 (184)
Q Consensus        61 ~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~-----p~~~~~l~~L~~L~l~~n~~~~~----l~~  131 (184)
                      +.|+.+++++|.+.......+..++...+.++.+++++|.+....     ...+..+++|+.|++++|.++..    +..
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~  237 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  237 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence            344455555554443322222333455667777777777776431     22345567778888887776421    222


Q ss_pred             hhhcCCCCCcEEECCCCCCCccccCc--cccc--cccceeecccccccee
Q 038485          132 KELDSLRDLEELDIGGNKIDKFVVSK--GTTN--TIKNANLYKLAGFFAI  177 (184)
Q Consensus       132 ~~~~~~~~L~~L~ls~N~l~~~~~~~--~~~~--~l~~L~~~~l~~~~~~  177 (184)
                       .+..++.|++|++++|.+.+.....  ..+.  .-..|..+++++|.|.
T Consensus       238 -~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         238 -ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             -HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             -cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence             4566777888888888776532110  1111  1234566677777664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.2e-07  Score=72.61  Aligned_cols=92  Identities=25%  Similarity=0.162  Sum_probs=52.1

Q ss_pred             CCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchh----HHhhc-cCCCCcEEeCCCccccCc----cc
Q 038485           60 FQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSI----LSSLT-HLSSLRSLNLFWNRLEGS----ID  130 (184)
Q Consensus        60 l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~----p~~~~-~l~~L~~L~l~~n~~~~~----l~  130 (184)
                      ...|+.++++++.+.......+...+...++|++|++++|.+.+..    ++.+. ....|+.|++++|.+++.    +.
T Consensus       311 ~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~  390 (460)
T d1z7xw1         311 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  390 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             ccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHH
Confidence            3466677777666654433332233445556777777777765432    22232 245577777777776521    21


Q ss_pred             HhhhcCCCCCcEEECCCCCCCc
Q 038485          131 VKELDSLRDLEELDIGGNKIDK  152 (184)
Q Consensus       131 ~~~~~~~~~L~~L~ls~N~l~~  152 (184)
                      . .+..+++|++|++++|++++
T Consensus       391 ~-~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         391 A-TLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             H-HHHHCCCCCEEECCSSSCCH
T ss_pred             H-HHhcCCCCCEEECCCCcCCH
Confidence            1 34456677777777777765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=4.1e-07  Score=67.95  Aligned_cols=134  Identities=24%  Similarity=0.307  Sum_probs=87.8

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCC-CCCchhHH-hhc
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGN-SFNNSILS-SLT  110 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n-~~~~~~p~-~~~  110 (184)
                      ..++++|+++++.+..  ......+..+++|++|+++++.+....+..    +..+++|+.|+++++ .+++.... ...
T Consensus        45 ~~~L~~LdLs~~~i~~--~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~----l~~~~~L~~L~Ls~c~~itd~~l~~l~~  118 (284)
T d2astb2          45 PFRVQHMDLSNSVIEV--STLHGILSQCSKLQNLSLEGLRLSDPIVNT----LAKNSNLVRLNLSGCSGFSEFALQTLLS  118 (284)
T ss_dssp             CBCCCEEECTTCEECH--HHHHHHHTTBCCCSEEECTTCBCCHHHHHH----HTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred             CCCCCEEECCCCccCH--HHHHHHHHhCCCcccccccccCCCcHHHHH----HhcCCCCcCccccccccccccccchhhH
Confidence            4578899999887764  122334577899999999999887665555    888999999999985 56644333 345


Q ss_pred             cCCCCcEEeCCCcc-ccCc-ccHhhhc-CCCCCcEEECCCC--CCCccccCccccccccceeecccccc
Q 038485          111 HLSSLRSLNLFWNR-LEGS-IDVKELD-SLRDLEELDIGGN--KIDKFVVSKGTTNTIKNANLYKLAGF  174 (184)
Q Consensus       111 ~l~~L~~L~l~~n~-~~~~-l~~~~~~-~~~~L~~L~ls~N--~l~~~~~~~~~~~~l~~L~~~~l~~~  174 (184)
                      .+++|++|+++++. +++. +.. .+. .++.|+.|++++.  .+++... ......+++|+.++++++
T Consensus       119 ~~~~L~~L~ls~c~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~i~~~~l-~~l~~~~~~L~~L~L~~~  185 (284)
T d2astb2         119 SCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDL-STLVRRCPNLVHLDLSDS  185 (284)
T ss_dssp             HCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCHHHH-HHHHHHCTTCSEEECTTC
T ss_pred             HHHhccccccccccccccccchh-hhcccccccchhhhcccccccccccc-cccccccccccccccccc
Confidence            68899999999863 4421 222 233 3578999999864  3443211 112234556666666664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=2.4e-08  Score=68.90  Aligned_cols=70  Identities=29%  Similarity=0.238  Sum_probs=51.3

Q ss_pred             hcCCCCCcEEECCCCCCCch--hHHhhccCCCCcEEeCCCccccCcccHhhhcCCCCCcEEECCCCCCCcccc
Q 038485           85 LSRLNNLKMLNLSGNSFNNS--ILSSLTHLSSLRSLNLFWNRLEGSIDVKELDSLRDLEELDIGGNKIDKFVV  155 (184)
Q Consensus        85 ~~~l~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~L~l~~n~~~~~l~~~~~~~~~~L~~L~ls~N~l~~~~~  155 (184)
                      +..++.|++|++++|+++..  .+..+..+++|+.|++++|.++ .++.........|+.+++++|++.+...
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcc
Confidence            35678888899999988743  2455667888999999999987 5554334455578889999998876543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.29  E-value=4.1e-06  Score=63.05  Aligned_cols=77  Identities=25%  Similarity=0.214  Sum_probs=60.8

Q ss_pred             CCceEEEecCCCCCCccccccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhHHhhccC
Q 038485           33 MSRVIALDLSDTYGGEYWYLNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHL  112 (184)
Q Consensus        33 ~~~l~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l  112 (184)
                      ++++++|++++|.++.   +|..    ..+|+.|++++|.++.. +.     +  .+.|++|++++|.+. .+|. ++.+
T Consensus        57 ~~~L~~L~Ls~N~l~~---lp~~----~~~L~~L~l~~n~l~~l-~~-----l--p~~L~~L~L~~n~l~-~lp~-~~~l  119 (353)
T d1jl5a_          57 PPHLESLVASCNSLTE---LPEL----PQSLKSLLVDNNNLKAL-SD-----L--PPLLEYLGVSNNQLE-KLPE-LQNS  119 (353)
T ss_dssp             CTTCSEEECCSSCCSS---CCCC----CTTCCEEECCSSCCSCC-CS-----C--CTTCCEEECCSSCCS-SCCC-CTTC
T ss_pred             CCCCCEEECCCCCCcc---cccc----hhhhhhhhhhhcccchh-hh-----h--ccccccccccccccc-cccc-hhhh
Confidence            5689999999999987   6532    46899999999988753 21     1  246999999999998 4554 6778


Q ss_pred             CCCcEEeCCCcccc
Q 038485          113 SSLRSLNLFWNRLE  126 (184)
Q Consensus       113 ~~L~~L~l~~n~~~  126 (184)
                      +.|++++++++.+.
T Consensus       120 ~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         120 SFLKIIDVDNNSLK  133 (353)
T ss_dssp             TTCCEEECCSSCCS
T ss_pred             ccceeecccccccc
Confidence            99999999988876

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=8.6e-07  Score=60.78  Aligned_cols=83  Identities=27%  Similarity=0.276  Sum_probs=62.5

Q ss_pred             CCCCCCCEEeCCCCcCCCcch--hhhhhhhcCCCCCcEEECCCCCCCchhHHhhccCCCCcEEeCCCccccCcccH----
Q 038485           58 TPFQQLESLDLTDNKIASCVE--NEGIERLSRLNNLKMLNLSGNSFNNSILSSLTHLSSLRSLNLFWNRLEGSIDV----  131 (184)
Q Consensus        58 ~~l~~L~~L~ls~n~l~~~~p--~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~l~~----  131 (184)
                      ..+++|++|++++|+++...+  ..    +..+++|+.|++++|.++...+-.+.....|+.+++++|.+......    
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~----~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSI----VQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTH----HHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHH----HhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            457899999999999987543  32    56789999999999999854333344456799999999999743321    


Q ss_pred             --hhhcCCCCCcEEE
Q 038485          132 --KELDSLRDLEELD  144 (184)
Q Consensus       132 --~~~~~~~~L~~L~  144 (184)
                        ..+..+++|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence              2366789999886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.95  E-value=8.9e-06  Score=55.77  Aligned_cols=116  Identities=13%  Similarity=0.123  Sum_probs=69.2

Q ss_pred             CCceEEEecCCC-CCCcccc-ccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhH----
Q 038485           33 MSRVIALDLSDT-YGGEYWY-LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSIL----  106 (184)
Q Consensus        33 ~~~l~~L~l~~n-~l~~~~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p----  106 (184)
                      .+.+++|+|+++ .++.... .-...+...+.|++|++++|.+.......+.+++...+.|+.|++++|.++....    
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            467888888764 4543110 1122345567788888888877644434434445666778888888888775433    


Q ss_pred             HhhccCCCCcEEeCCCccccCccc-------HhhhcCCCCCcEEECCCCC
Q 038485          107 SSLTHLSSLRSLNLFWNRLEGSID-------VKELDSLRDLEELDIGGNK  149 (184)
Q Consensus       107 ~~~~~l~~L~~L~l~~n~~~~~l~-------~~~~~~~~~L~~L~ls~N~  149 (184)
                      ..+...++|++|++++|.+. .+.       ...+...++|+.++++.+.
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~-~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQS-VLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSC-CCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHhCCcCCEEECCCCcCC-CccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            23455577888888777543 221       1134456777777776543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.80  E-value=4.8e-05  Score=51.92  Aligned_cols=94  Identities=14%  Similarity=0.135  Sum_probs=70.0

Q ss_pred             CCCCCCCEEeCCCC-cCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhH----HhhccCCCCcEEeCCCccccCc----
Q 038485           58 TPFQQLESLDLTDN-KIASCVENEGIERLSRLNNLKMLNLSGNSFNNSIL----SSLTHLSSLRSLNLFWNRLEGS----  128 (184)
Q Consensus        58 ~~l~~L~~L~ls~n-~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p----~~~~~l~~L~~L~l~~n~~~~~----  128 (184)
                      .+.+.|+.|+++++ .+....-..+..++...+.|+.|++++|.+.....    +.+...+.|+.|++++|.+.+.    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45688999999974 46543333345557888999999999999985433    4455678999999999998732    


Q ss_pred             ccHhhhcCCCCCcEEECCCCCCCc
Q 038485          129 IDVKELDSLRDLEELDIGGNKIDK  152 (184)
Q Consensus       129 l~~~~~~~~~~L~~L~ls~N~l~~  152 (184)
                      +.. .+...++|++|++++|.+..
T Consensus        92 l~~-aL~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          92 LLR-STLVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             HHH-HTTTTCCCSEEECCCCSSCC
T ss_pred             HHH-HHHhCCcCCEEECCCCcCCC
Confidence            222 46677899999999887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.50  E-value=5.2e-05  Score=51.55  Aligned_cols=117  Identities=17%  Similarity=0.078  Sum_probs=73.5

Q ss_pred             CCceEEEecCC-CCCCcccc-ccCccCCCCCCCCEEeCCCCcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhH----
Q 038485           33 MSRVIALDLSD-TYGGEYWY-LNASLFTPFQQLESLDLTDNKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSIL----  106 (184)
Q Consensus        33 ~~~l~~L~l~~-n~l~~~~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p----  106 (184)
                      .+.+++|++++ +.++.... .-...+...++|+.|++++|.+....-..+.+++...+.++.+++.++.+.....    
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            46788888887 44543111 1122335677888888888887765555545556677888888888888775433    


Q ss_pred             HhhccCCCCcEEeC--CCccccC----cccHhhhcCCCCCcEEECCCCCC
Q 038485          107 SSLTHLSSLRSLNL--FWNRLEG----SIDVKELDSLRDLEELDIGGNKI  150 (184)
Q Consensus       107 ~~~~~l~~L~~L~l--~~n~~~~----~l~~~~~~~~~~L~~L~ls~N~l  150 (184)
                      +.+...++++.+++  ++|.+..    .+.. .+...+.|++|+++.+..
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~-~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHH-HHHhCCCcCEEeCcCCCC
Confidence            44556677776555  4555642    1222 455677888888876543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.67  E-value=0.0039  Score=41.74  Aligned_cols=117  Identities=21%  Similarity=0.162  Sum_probs=76.7

Q ss_pred             CCCCCCCEEeCCC-CcCCCcchhhhhhhhcCCCCCcEEECCCCCCCchhH----HhhccCCCCcEEeCCCccccCc----
Q 038485           58 TPFQQLESLDLTD-NKIASCVENEGIERLSRLNNLKMLNLSGNSFNNSIL----SSLTHLSSLRSLNLFWNRLEGS----  128 (184)
Q Consensus        58 ~~l~~L~~L~ls~-n~l~~~~p~~~~~~~~~l~~L~~L~l~~n~~~~~~p----~~~~~l~~L~~L~l~~n~~~~~----  128 (184)
                      .+.+.|++|++++ +.++...-..+..++...++|+.|++++|.++....    ..+.....++.++++++.+...    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4568999999998 456544444445667889999999999999986543    3455678999999999988632    


Q ss_pred             ccHhhhcCCCCCcEEECC--CCCCCccccC--ccccccccceeeccccccc
Q 038485          129 IDVKELDSLRDLEELDIG--GNKIDKFVVS--KGTTNTIKNANLYKLAGFF  175 (184)
Q Consensus       129 l~~~~~~~~~~L~~L~ls--~N~l~~~~~~--~~~~~~l~~L~~~~l~~~~  175 (184)
                      +.. .+...++|+.+++.  +|.+....-.  ...+...+.|..+++..+.
T Consensus        94 l~~-~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHH-HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            212 46677889876664  5667542211  1222334455555555443