Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 19/91 (20%)
Query: 29 GVMIAAASEAIWNGGGACGQ-------GTPNPCQGSSSVVVKIVDLCP---------AGS 72
GV A S A++N G ACGQ +PN GS + VV ++CP G
Sbjct: 63 GVATTALSTALFNEGYACGQCFQLKCVSSPNCYYGSPATVVTATNICPPNYGQASNNGGW 122
Query: 73 C---RGTIDLSQEAFASIADTACGVINISYQ 100
C R DL++ AF IA+ G+I +SY+
Sbjct: 123 CNPPRVHFDLTKPAFMKIANWKAGIIPVSYR 153
Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.
May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.
Oryza sativa subsp. japonica (taxid: 39947)
Close Homologs in the Non-Redundant Database Detected by BLAST
Score = 92 (37.4 bits), Expect = 0.00095, P = 0.00095
Identities = 31/103 (30%), Positives = 45/103 (43%)
Query: 3 SAQNHGTATYYTPPYIPSACYGFADQGVM-----IAAASEAIWNGGGACGQGTPNPCQGS 57
S G AT+Y C F D + +A + +A W+ CG
Sbjct: 167 SGATTGEATFYGGNLSGGTC-SFTDYTLPSHLSGVAFSGQA-WDNAAECGACIAVTGPNG 224
Query: 58 SSVVVKIVDLCPAGSCRGT-IDLSQEAFASIADTACGVINISY 99
++V V +VD CP C T +DL + AF ++A + G I ISY
Sbjct: 225 NTVKVMVVDKCP--ECAQTHLDLFESAFTTLASASEGQIPISY 265
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.131 0.415 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 100 100 0.00091 102 3 11 22 0.42 30
29 0.47 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 547 (58 KB)
Total size of DFA: 116 KB (2076 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.16u 0.14s 10.30t Elapsed: 00:00:00
Total cpu time: 10.16u 0.14s 10.30t Elapsed: 00:00:00
Start: Sat May 11 09:47:26 2013 End: Sat May 11 09:47:26 2013
Score = 61.4 bits (150), Expect = 3e-14
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 32 IAAASEAIWNGGGACGQ----------GTPNPCQGSSSVVVKIVDLCPAGSCRGTIDLSQ 81
AA S +++N G ACG+ C+ SV V I D CP R DLS
Sbjct: 1 TAAGSASLYNDGTACGECYQVKCLTAAHPTGTCRVLRSVTVTITDRCP-FPPRRHFDLSG 59
Query: 82 EAFASIADTACGVINISY 99
AF ++A G++ + Y
Sbjct: 60 PAFEALAKPRAGIVPVEY 77
Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen. Length = 77
>gnl|CDD|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel
Score = 37.8 bits (88), Expect = 7e-05
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 19/86 (22%)
Query: 33 AAASEAIWNGGGACG-------QGTPNPCQGSSSVVVKIVDLCPAGSC------------ 73
AA S A++N G +CG +P C+ S+ V + CP
Sbjct: 2 AALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPP 61
Query: 74 RGTIDLSQEAFASIADTACGVINISY 99
R DLSQ AF IA G++ + Y
Sbjct: 62 RKHFDLSQPAFEKIAQYKAGIVPVKY 87
Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen. Length = 87
>gnl|CDD|226755 COG4305, COG4305, Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.85 E-value=4.6e-22 Score=122.68 Aligned_cols=65 Identities=42% Similarity=0.754 Sum_probs=54.3
Q ss_pred EEEecccccCCCCCCCCCcccC----------CCCC--CeEEEEEeecCCCCCCC-CceecCHHHHHhhhcCCCcEEEEE
Q 038502 32 IAAASEAIWNGGGACGQGTPNP----------CQGS--SSVVVKIVDLCPAGSCR-GTIDLSQEAFASIADTACGVINIS 98 (100)
Q Consensus 32 ~aAls~~~~~~g~~CG~~i~~~----------~~~g--~sv~v~V~D~Cp~~~C~-~~lDLS~~aF~~l~~~~~G~~~v~ 98 (100)
+||++..+|++|..||+++... | .. |+|+|+|+|+|| .|. +|||||+.||++|++++.|+++|+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~-~~~~ksV~v~V~D~Cp--~~~~~~lDLS~~aF~~la~~~~G~i~V~ 77 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTC-KVGNKSVTVTVVDRCP--GCPPNHLDLSPAAFKALADPDAGVIPVE 77 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--B-ESEECEEEEEEEEE-T--TSSSSEEEEEHHHHHHTBSTTCSSEEEE
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceE-EecCCeEEEEEEccCC--CCcCCEEEeCHHHHHHhCCCCceEEEEE
Confidence 5889999999999999942111 3 23 999999999999 899 999999999999999999999999
Q ss_pred E
Q 038502 99 Y 99 (100)
Q Consensus 99 w 99 (100)
|
T Consensus 78 w 78 (78)
T PF03330_consen 78 W 78 (78)
T ss_dssp E
T ss_pred C
Confidence 9
They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel
Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family
It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Score = 71.4 bits (175), Expect = 5e-17
Identities = 33/106 (31%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Query: 1 MASAQNH-GTATYYTPPYIPSAC-YGFADQGVMIAAASEAIWNGGG----ACGQGTPNPC 54
MA H G ATY Y A + I A + A N GG G
Sbjct: 1 MAYDDLHEGYATYTGSGYSGGAFLLDPIPSDMEITAINPADLNYGGVKAALAGS-YLEVE 59
Query: 55 QGSSSVVVKIVDLCPAGSCRGTIDLSQEAFASIADTACGVINISYQ 100
V + DL P G+ RG +DLS AF I + G INI ++
Sbjct: 60 GPKGKTTVYVTDLYPEGA-RGALDLSPNAFRKIGNMKDGKINIKWR 104
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245
Score = 51.7 bits (123), Expect = 1e-09
Identities = 26/117 (22%), Positives = 37/117 (31%), Gaps = 24/117 (20%)
Query: 7 HGTATYYT------PPYIPSAC-YGFADQ---GVMIAAASEAIWNGGGACGQ------GT 50
+T+Y P AC Y D+ M + I+ G CG
Sbjct: 21 DAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTK 80
Query: 51 PNPCQGSSSVVVKIVDLCPAGSCRGTIDLSQEAFASIADTA-------CGVINISYQ 100
P C G VV I D DLS AF ++A G + + ++
Sbjct: 81 PEACSGEPVVVH-ITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFR 136
