Citrus Sinensis ID: 038503

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
Protein Sequence
QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVIILIVA
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
qevvlldneitFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGvmiddissniesshasTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVIILIVA
Flexible Loop (DISEMBL)
qevvlldneitfneaIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVIILIVA
Low Complexity Region (SEG)
QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKsssslsclllvifgiilliviilivA
Disordered region (IsUnstruct)
***VLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDI******************************LSCLLLVIFGIILLIVIILIV*
Disordered Region (DISOPRED)
***********FN**IIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVIILIVA
Disordered Region (DISEMBL)
QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE***********************SSLSCLLLVIFGIILLIVIILIVA
Disordered Region (DISPRO)
*EVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVIILIVA
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
QEVVLLDNEITFNEAIxxxxxxxxxxxxxxxxxxxxxFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVIILIVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	107	2.2.26 [Sep-21-2011]
P93654	268	Syntaxin-22 OS=Arabidopsi	yes	no	0.887	0.354	0.726	9e-35
Q39233	279	Syntaxin-21 OS=Arabidopsi	no	no	0.887	0.340	0.694	1e-34
Q9C615	416	Putative syntaxin-24 OS=A	no	no	0.738	0.189	0.587	4e-18
O04378	255	Syntaxin-23 OS=Arabidopsi	no	no	0.728	0.305	0.679	1e-17
O70439	261	Syntaxin-7 OS=Mus musculu	yes	no	0.971	0.398	0.396	8e-16
Q54JY7	356	Syntaxin-7A OS=Dictyostel	yes	no	0.981	0.294	0.380	2e-14
Q5RBW6	276	Syntaxin-12 OS=Pongo abel	yes	no	0.822	0.318	0.406	2e-13
Q86Y82	276	Syntaxin-12 OS=Homo sapie	yes	no	0.728	0.282	0.435	4e-13
O70257	261	Syntaxin-7 OS=Rattus norv	yes	no	0.813	0.333	0.409	1e-12
Q3ZBT5	261	Syntaxin-7 OS=Bos taurus	no	no	0.785	0.321	0.411	2e-12

>sp|P93654|SYP22_ARATH Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1

 Score =  145 bits (365), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 69/95 (72%), Positives = 86/95 (90%)

Query: 1   QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
           QE+VLLDNEI FNEA+IEEREQGI+EI +QI EVNEIFKDLAVLV++QGVMIDDI ++I+
Sbjct: 162 QELVLLDNEIAFNEAVIEEREQGIQEIHQQIGEVNEIFKDLAVLVNDQGVMIDDIGTHID 221

Query: 61  SSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFG 95
           +S A+T+Q  +QL +A+K QKS+SSL+CLLLVIFG
Sbjct: 222 NSRAATSQGKSQLVQAAKTQKSNSSLTCLLLVIFG 256

May provide the t-SNARE function in the vacuolar assembly.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39233|SYP21_ARATH Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 SV=1

 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/95 (69%), Positives = 86/95 (90%)

Query: 1   QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
           QEVV LDNEITFNEAIIEEREQGI+EI++QI +VN +FKDLA++V+ QG ++DDISSN++
Sbjct: 173 QEVVFLDNEITFNEAIIEEREQGIREIEDQIRDVNGMFKDLALMVNHQGNIVDDISSNLD 232

Query: 61  SSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFG 95
           +SHA+T QAT QL KA+K Q+S+SSL+CLL++IFG
Sbjct: 233 NSHAATTQATVQLRKAAKTQRSNSSLTCLLILIFG 267

May function in the docking or fusion of transport vesicles with the prevacuolar membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 59/80 (73%), Gaps = 1/80 (1%)

Query: 1   QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
           QE+VLLDNEI+ NEA IE REQGI+E++ QISEV E+FKDLAV+V  QG  IDDI   I+
Sbjct: 252 QEIVLLDNEISLNEARIEAREQGIQEVKHQISEVMEMFKDLAVMVDHQGT-IDDIDEKID 310

Query: 61  SSHASTAQATTQLAKASKIQ 80
           +  ++ AQ  + L KAS  Q
Sbjct: 311 NLRSAAAQGKSHLVKASNTQ 330

Vesicle trafficking protein that functions in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|O04378|SYP23_ARATH Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/78 (67%), Positives = 68/78 (87%)

Query: 1   QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
           QE+VLLDNEI FNEA+IEEREQGI+EIQ+QI EV+EIFKDLAVLVH+QG MIDDI ++I+
Sbjct: 171 QELVLLDNEIAFNEAVIEEREQGIQEIQQQIGEVHEIFKDLAVLVHDQGNMIDDIGTHID 230

Query: 61  SSHASTAQATTQLAKASK 78
           +S+A+TAQ  + L +  +
Sbjct: 231 NSYAATAQGKSHLVRHQR 248

May function in the docking or fusion of transport vesicles with the prevacuolar membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|O70439|STX7_MOUSE Syntaxin-7 OS=Mus musculus GN=Stx7 PE=1 SV=3

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 71/106 (66%), Gaps = 2/106 (1%)

Query: 2   EVVLLDNEITFNE-AIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
           +V + D EIT ++  +I ERE  I++++  I ++NEIFKDL +++HEQG MID I +N+E
Sbjct: 152 QVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDMIDSIEANVE 211

Query: 61  SSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVIILIV 106
           S+     QA  QL++A+  Q+ S    C+++ I  ++ +++I LIV
Sbjct: 212 SAEVHVQQANQQLSRAADYQRKSRKTLCIIIFIL-VVRIVIICLIV 256

May be involved in protein trafficking from the plasma membrane to the early endosome (EE) as well as in homotypic fusion of endocytic organelles. Mediates the endocytic trafficking from early endosomes to late endosomes and lysosomes.

Mus musculus (taxid: 10090)

>sp|Q54JY7|STX7A_DICDI Syntaxin-7A OS=Dictyostelium discoideum GN=syn7A PE=1 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 73/105 (69%)

Query: 1   QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
           Q++  ++ E  +  +II+ER++GI++I++ I E+NEIF DL+ LV EQGVMI+ I +++E
Sbjct: 246 QQLAQIEAEREYQNSIIQERDEGIRKIEQSIVEINEIFVDLSGLVAEQGVMINTIEASLE 305

Query: 61  SSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVIILI 105
           S+  +T +    L +ASK QKSS +  C +++I  I+  ++ +++
Sbjct: 306 STTINTKEGVNHLREASKNQKSSRNKMCWIVLILLIVCAVLGVIL 350

Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for fusion of late endosomes with lysosomes and homotypic lysosomal fusion. May be involved in protein trafficking from the plasma membrane to the early endosome (EE) as well as in homotypic fusion of endocytic organelles.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5RBW6|STX12_PONAB Syntaxin-12 OS=Pongo abelii GN=STX12 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 61/91 (67%), Gaps = 3/91 (3%)

Query: 7   DNEITFNEA---IIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSH 63
           D+E+   E    +I+ERE  I++++  I +VN+IFKDLA+++H+QG +ID I +N+ESS 
Sbjct: 168 DDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSE 227

Query: 64  ASTAQATTQLAKASKIQKSSSSLSCLLLVIF 94
               +AT QL +A+  QK S    C+L+++ 
Sbjct: 228 VHVERATEQLQRAAYYQKKSRKKMCILVLVL 258

SNARE that acts to regulate protein transport between late endosomes and the trans-Golgi network. The SNARE complex containing STX6, STX12, VAMP4 and VTI1A mediates vesicle fusion (in vitro).

Pongo abelii (taxid: 9601)

>sp|Q86Y82|STX12_HUMAN Syntaxin-12 OS=Homo sapiens GN=STX12 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 56/78 (71%)

Query: 16  IIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAK 75
           +I+ERE  I++++  I +VN+IFKDLA+++H+QG +ID I +N+ESS     +AT QL +
Sbjct: 180 LIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATEQLQR 239

Query: 76  ASKIQKSSSSLSCLLLVI 93
           A+  QK S    C+L+++
Sbjct: 240 AAYYQKKSRKKMCILVLV 257

SNARE that acts to regulate protein transport between late endosomes and the trans-Golgi network. The SNARE complex containing STX6, STX12, VAMP4 and VTI1A mediates vesicle fusion (in vitro).

Homo sapiens (taxid: 9606)

>sp|O70257|STX7_RAT Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 58/88 (65%), Gaps = 1/88 (1%)

Query: 2   EVVLLDNEITFNE-AIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
           +V + D EIT ++  +I ERE  I++++  I ++NEIFKDL +++HEQG +ID I +N+E
Sbjct: 152 QVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVE 211

Query: 61  SSHASTAQATTQLAKASKIQKSSSSLSC 88
           S+     QA  QL++A+  Q+ S    C
Sbjct: 212 SAEVHVQQANQQLSRAANYQRKSRKTLC 239

May be involved in protein trafficking from the plasma membrane to the early endosome (EE) as well as in homotypic fusion of endocytic organelles. Mediates the endocytic trafficking from early endosomes to late endosomes and lysosomes.

Rattus norvegicus (taxid: 10116)

>sp|Q3ZBT5|STX7_BOVIN Syntaxin-7 OS=Bos taurus GN=STX7 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 57/85 (67%), Gaps = 1/85 (1%)

Query: 5   LLDNEITFNE-AIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSH 63
           L D EIT ++  +I+ERE  I++++  I ++NEIFKDL +++HEQG +ID I +N+E++ 
Sbjct: 155 LQDEEITEDDLRLIQERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAE 214

Query: 64  ASTAQATTQLAKASKIQKSSSSLSC 88
               QA  QL++A+  Q+ S    C
Sbjct: 215 VHVQQANQQLSRAADYQRKSRKTLC 239

May be involved in protein trafficking from the plasma membrane to the early endosome (EE) as well as in homotypic fusion of endocytic organelles. Mediates the endocytic trafficking from early endosomes to late endosomes and lysosomes.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
449462039	274	PREDICTED: syntaxin-22-like [Cucumis sat	0.887	0.346	0.821	2e-38
388505230	273	unknown [Lotus japonicus]	0.887	0.347	0.821	2e-38
82570055	276	syntaxin-like protein [Brassica oleracea	0.887	0.344	0.810	3e-38
356496277	273	PREDICTED: syntaxin-22-like [Glycine max	0.887	0.347	0.821	6e-38
225427138	274	PREDICTED: syntaxin-22 [Vitis vinifera]	0.887	0.346	0.821	1e-37
356531439	273	PREDICTED: syntaxin-22-like [Glycine max	0.887	0.347	0.8	5e-37
116788059	273	unknown [Picea sitchensis] gi|148909620|	0.887	0.347	0.8	2e-36
224074317	261	predicted protein [Populus trichocarpa]	0.878	0.360	0.776	4e-35
302808979	265	hypothetical protein SELMODRAFT_269103 [	1.0	0.403	0.672	5e-35
302806487	277	hypothetical protein SELMODRAFT_121392 [	1.0	0.386	0.672	5e-35

>gi|449462039|ref|XP_004148749.1| PREDICTED: syntaxin-22-like [Cucumis sativus]

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/95 (82%), Positives = 86/95 (90%)

Query: 1   QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
           QEV+LLDNEI FNEAIIEEREQGI EIQ+QI EVNEIFKDLAVLVHEQG MIDDI SNIE
Sbjct: 168 QEVLLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIE 227

Query: 61  SSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFG 95
            +HA+T+Q TTQL KASK Q+S+SSL+CLLLVIFG
Sbjct: 228 GAHAATSQGTTQLVKASKTQRSNSSLACLLLVIFG 262

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505230|gb|AFK40681.1| unknown [Lotus japonicus]

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/95 (82%), Positives = 87/95 (91%)

Query: 1   QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
           QEV+ LDNEI FNEAII+EREQGI EIQ+QI EVNEIFKDLAVLVHEQG MIDDI SNIE
Sbjct: 167 QEVLFLDNEIAFNEAIIKEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIE 226

Query: 61  SSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFG 95
           +SHA+TAQA +QLAKASK Q+S+SSL+CLLLVIFG
Sbjct: 227 NSHAATAQAKSQLAKASKTQRSNSSLACLLLVIFG 261

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82570055|gb|ABB83612.1| syntaxin-like protein [Brassica oleracea]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/95 (81%), Positives = 90/95 (94%)

Query: 1   QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
           QEVV LDNEITFNEAIIEEREQGI+EIQEQI EVNEIFKDLAVLV++QGVMIDDISSNI+
Sbjct: 170 QEVVFLDNEITFNEAIIEEREQGIREIQEQIGEVNEIFKDLAVLVNDQGVMIDDISSNID 229

Query: 61  SSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFG 95
           +SHA+T+QAT QL KASK Q+++SSL+CLL++IFG
Sbjct: 230 NSHAATSQATAQLRKASKTQRANSSLTCLLILIFG 264

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496277|ref|XP_003516995.1| PREDICTED: syntaxin-22-like [Glycine max]

 Score =  160 bits (406), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 78/95 (82%), Positives = 86/95 (90%)

Query: 1   QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
           QEV+ LDNEI+FNEAIIEEREQGI+EIQ QI EVNEIFKDLAVLVHEQG MIDDI SNIE
Sbjct: 167 QEVLFLDNEISFNEAIIEEREQGIQEIQSQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIE 226

Query: 61  SSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFG 95
            SH +TAQA +QLAKASK Q+S+SSL+CLLLVIFG
Sbjct: 227 HSHEATAQAKSQLAKASKTQRSNSSLTCLLLVIFG 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427138|ref|XP_002278649.1| PREDICTED: syntaxin-22 [Vitis vinifera] gi|147791633|emb|CAN75135.1| hypothetical protein VITISV_018887 [Vitis vinifera] gi|297742058|emb|CBI33845.3| unnamed protein product [Vitis vinifera]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/95 (82%), Positives = 87/95 (91%)

Query: 1   QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
           QEV+LLDNEI FNEAIIEEREQGI+EIQ QI EVNEIFKDLAVLVHEQGVMIDDI SNI+
Sbjct: 168 QEVLLLDNEIVFNEAIIEEREQGIQEIQHQIGEVNEIFKDLAVLVHEQGVMIDDIGSNID 227

Query: 61  SSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFG 95
            + A+TAQA +QLAKASK Q+S+SSL+CLLLVIFG
Sbjct: 228 GAQAATAQAKSQLAKASKTQRSNSSLTCLLLVIFG 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531439|ref|XP_003534285.1| PREDICTED: syntaxin-22-like [Glycine max]

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 76/95 (80%), Positives = 85/95 (89%)

Query: 1   QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
           QEV+ LDNEI FNEAII+ER+QGI+EIQ QI EVNEIFKDLAVLVHEQG MIDDI SNIE
Sbjct: 167 QEVLFLDNEIAFNEAIIDERDQGIQEIQSQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIE 226

Query: 61  SSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFG 95
            SHA+T QA +QLAKASK Q+S+SSL+CLLLVIFG
Sbjct: 227 HSHAATVQAKSQLAKASKTQRSNSSLTCLLLVIFG 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116788059|gb|ABK24740.1| unknown [Picea sitchensis] gi|148909620|gb|ABR17901.1| unknown [Picea sitchensis]

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/95 (80%), Positives = 88/95 (92%)

Query: 1   QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
           QEV+ L+NE+ FNEAIIEEREQG++EIQ+QI EVNEIFKDLAVLVHEQGVMIDDI SNIE
Sbjct: 167 QEVLQLENEVVFNEAIIEEREQGLQEIQQQIGEVNEIFKDLAVLVHEQGVMIDDIDSNIE 226

Query: 61  SSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFG 95
           SS+++T QA +QLAKASK QKS+SSL+CLLLVIFG
Sbjct: 227 SSYSATVQAKSQLAKASKSQKSNSSLTCLLLVIFG 261

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074317|ref|XP_002304351.1| predicted protein [Populus trichocarpa] gi|222841783|gb|EEE79330.1| predicted protein [Populus trichocarpa]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 73/94 (77%), Positives = 85/94 (90%)

Query: 1   QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
           QEV+LLDNEI FNEAIIEEREQGI EIQ+QI EVNEIFKDLAVLVHEQG MIDDI S+IE
Sbjct: 168 QEVLLLDNEIVFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSHIE 227

Query: 61  SSHASTAQATTQLAKASKIQKSSSSLSCLLLVIF 94
           S+ A+T+Q T+QL KA+K Q+S+SSL+CLL+VIF
Sbjct: 228 SAQAATSQGTSQLVKAAKTQRSNSSLACLLMVIF 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302808979|ref|XP_002986183.1| hypothetical protein SELMODRAFT_269103 [Selaginella moellendorffii] gi|300146042|gb|EFJ12714.1| hypothetical protein SELMODRAFT_269103 [Selaginella moellendorffii]

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 72/107 (67%), Positives = 94/107 (87%)

Query: 1   QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
           QEV+ LDNE+TFNEA+IEER QGI+E+QEQI EV+EIFKDLAV+VHEQG  I++I S++E
Sbjct: 159 QEVLQLDNEVTFNEAVIEERAQGIREVQEQIEEVHEIFKDLAVMVHEQGGTIEEIDSHVE 218

Query: 61  SSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVIILIVA 107
           +S+A+TAQA  QL+KASK QKS ++LSCLL+VIF + L+IVII++ A
Sbjct: 219 NSYAATAQANKQLSKASKSQKSGNTLSCLLMVIFAVALVIVIIVLAA 265

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302806487|ref|XP_002984993.1| hypothetical protein SELMODRAFT_121392 [Selaginella moellendorffii] gi|300147203|gb|EFJ13868.1| hypothetical protein SELMODRAFT_121392 [Selaginella moellendorffii]

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 72/107 (67%), Positives = 94/107 (87%)

Query: 1   QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
           QEV+ LDNE+TFNEA+IEER QGI+E+QEQI EV+EIFKDLAV+VHEQG  I++I S++E
Sbjct: 171 QEVLQLDNEVTFNEAVIEERAQGIREVQEQIEEVHEIFKDLAVMVHEQGGTIEEIDSHVE 230

Query: 61  SSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVIILIVA 107
           +S+A+TAQA  QL+KASK QKS ++LSCLL+VIF + L+IVII++ A
Sbjct: 231 NSYAATAQANKQLSKASKSQKSGNTLSCLLMVIFAVALVIVIIVLAA 277

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
TAIR|locus:2148960	279	SYP21 "syntaxin of plants 21"	0.757	0.290	0.691	1.1e-25
TAIR|locus:3356150	268	VAM3 "VACUOLAR MORPHOLOGY 3" [	0.757	0.302	0.703	1.4e-25
TAIR|locus:2129406	262	SYP23 "syntaxin of plants 23"	0.700	0.286	0.706	1.1e-23
TAIR|locus:2028336	416	ATSYP24 [Arabidopsis thaliana	0.738	0.189	0.587	9.8e-18
ASPGD|ASPL0000072279	273	pepA [Emericella nidulans (tax	0.691	0.271	0.472	6.9e-15
MGI|MGI:1858210	261	Stx7 "syntaxin 7" [Mus musculu	0.747	0.306	0.432	3e-14
UNIPROTKB|F1S3P8	261	STX7 "Uncharacterized protein"	0.747	0.306	0.432	3.8e-14
UNIPROTKB|Q5ZMP2	258	STX7 "Uncharacterized protein"	0.700	0.290	0.447	4.9e-14
RGD|619747	261	Stx7 "syntaxin 7" [Rattus norv	0.747	0.306	0.419	6.2e-14
UNIPROTKB|Q3ZBT5	261	STX7 "Syntaxin-7" [Bos taurus	0.719	0.295	0.423	1.3e-13

TAIR|locus:2148960 SYP21 "syntaxin of plants 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 56/81 (69%), Positives = 72/81 (88%)

Query:     1 QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
             QEVV LDNEITFNEAIIEEREQGI+EI++QI +VN +FKDLA++V+ QG ++DDISSN++
Sbjct:   173 QEVVFLDNEITFNEAIIEEREQGIREIEDQIRDVNGMFKDLALMVNHQGNIVDDISSNLD 232

Query:    61 SSHASTAQATTQLAKASKIQK 81
             +SHA+T QAT QL KA+K Q+
Sbjct:   233 NSHAATTQATVQLRKAAKTQR 253

GO:0005484 "SNAP receptor activity" evidence=IEA;IMP;IDA;TAS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0006896 "Golgi to vacuole transport" evidence=TAS

GO:0005770 "late endosome" evidence=IDA;TAS

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0030140 "trans-Golgi network transport vesicle" evidence=IDA;TAS

GO:0016020 "membrane" evidence=IDA

GO:0045324 "late endosome to vacuole transport" evidence=IMP

GO:0006623 "protein targeting to vacuole" evidence=RCA;IDA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:3356150 VAM3 "VACUOLAR MORPHOLOGY 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 57/81 (70%), Positives = 72/81 (88%)

Query:     1 QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
             QE+VLLDNEI FNEA+IEEREQGI+EI +QI EVNEIFKDLAVLV++QGVMIDDI ++I+
Sbjct:   162 QELVLLDNEIAFNEAVIEEREQGIQEIHQQIGEVNEIFKDLAVLVNDQGVMIDDIGTHID 221

Query:    61 SSHASTAQATTQLAKASKIQK 81
             +S A+T+Q  +QL +A+K QK
Sbjct:   222 NSRAATSQGKSQLVQAAKTQK 242

GO:0005484 "SNAP receptor activity" evidence=IEA;TAS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA

GO:0005770 "late endosome" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0030140 "trans-Golgi network transport vesicle" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009660 "amyloplast organization" evidence=IMP

GO:0005773 "vacuole" evidence=IDA

GO:0010118 "stomatal movement" evidence=IMP

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=IGI;RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

GO:0009959 "negative gravitropism" evidence=IMP

TAIR|locus:2129406 SYP23 "syntaxin of plants 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 53/75 (70%), Positives = 67/75 (89%)

Query:     1 QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
             QE+VLLDNEI FNEA+IEEREQGI+EIQ+QI EV+EIFKDLAVLVH+QG MIDDI ++I+
Sbjct:   171 QELVLLDNEIAFNEAVIEEREQGIQEIQQQIGEVHEIFKDLAVLVHDQGNMIDDIGTHID 230

Query:    61 SSHASTAQATTQLAK 75
             +S+A+TAQ  + L +
Sbjct:   231 NSYAATAQGKSHLVR 245

GO:0005484 "SNAP receptor activity" evidence=IEA;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2028336 ATSYP24 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 9.8e-18, P = 9.8e-18
 Identities = 47/80 (58%), Positives = 59/80 (73%)

Query:     1 QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
             QE+VLLDNEI+ NEA IE REQGI+E++ QISEV E+FKDLAV+V  QG  IDDI   I+
Sbjct:   252 QEIVLLDNEISLNEARIEAREQGIQEVKHQISEVMEMFKDLAVMVDHQGT-IDDIDEKID 310

Query:    61 SSHASTAQATTQLAKASKIQ 80
             +  ++ AQ  + L KAS  Q
Sbjct:   311 NLRSAAAQGKSHLVKASNTQ 330

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=ISS;RCA

GO:0016021 "integral to membrane" evidence=TAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

ASPGD|ASPL0000072279 pepA [Emericella nidulans (taxid:162425)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 35/74 (47%), Positives = 53/74 (71%)

Query:     8 NEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTA 67
             +E+ F EA+I ERE  I+ I++ + E+NE+F+D+A +VHEQG  +D IS N+E+ HA+T 
Sbjct:   173 DEVDFQEALIIEREAEIRNIEQSVGELNELFRDVAHIVHEQGEQLDTISGNVENVHANTQ 232

Query:    68 QATTQLAKASKIQK 81
              A  +L  AS+ QK
Sbjct:   233 GANVELRSASRYQK 246

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0005768 "endosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0006896 "Golgi to vacuole transport" evidence=IEA

GO:0000011 "vacuole inheritance" evidence=IEA

MGI|MGI:1858210 Stx7 "syntaxin 7" [Mus musculus (taxid:10090)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 35/81 (43%), Positives = 56/81 (69%)

Query:     2 EVVLLDNEITFNEA-IIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
             +V + D EIT ++  +I ERE  I++++  I ++NEIFKDL +++HEQG MID I +N+E
Sbjct:   152 QVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDMIDSIEANVE 211

Query:    61 SSHASTAQATTQLAKASKIQK 81
             S+     QA  QL++A+  Q+
Sbjct:   212 SAEVHVQQANQQLSRAADYQR 232

GO:0000149 "SNARE binding" evidence=ISO;IBA

GO:0005484 "SNAP receptor activity" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005768 "endosome" evidence=ISO

GO:0006886 "intracellular protein transport" evidence=IBA

GO:0006906 "vesicle fusion" evidence=ISO

GO:0008333 "endosome to lysosome transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=IBA

GO:0016192 "vesicle-mediated transport" evidence=ISO

GO:0031201 "SNARE complex" evidence=ISO;IBA

GO:0031902 "late endosome membrane" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

UNIPROTKB|F1S3P8 STX7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 35/81 (43%), Positives = 56/81 (69%)

Query:     2 EVVLLDNEITFNEA-IIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
             +V + D EIT ++  +I ERE  I++++  I ++NEIFKDL +++HEQG +ID I +N+E
Sbjct:   152 QVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVE 211

Query:    61 SSHASTAQATTQLAKASKIQK 81
             SS     QA  QL++A+  Q+
Sbjct:   212 SSEVHVQQANQQLSRAADYQR 232

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q5ZMP2 STX7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 34/76 (44%), Positives = 54/76 (71%)

Query:     7 DNEITFNEA-IIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHAS 65
             D EIT ++  +IEERE  I++++  I ++NEIFKDL +++HEQG +ID I +N+E++   
Sbjct:   153 DEEITEDDLRLIEERESSIRQLESDIMDINEIFKDLGMMIHEQGDVIDSIEANVENADVH 212

Query:    66 TAQATTQLAKASKIQK 81
               QA  QLA+A+  Q+
Sbjct:   213 VQQANQQLARAANYQQ 228

GO:0000149 "SNARE binding" evidence=IBA

GO:0005484 "SNAP receptor activity" evidence=IBA

GO:0006886 "intracellular protein transport" evidence=IBA

GO:0016079 "synaptic vesicle exocytosis" evidence=IBA

GO:0031201 "SNARE complex" evidence=IBA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

RGD|619747 Stx7 "syntaxin 7" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 34/81 (41%), Positives = 56/81 (69%)

Query:     2 EVVLLDNEITFNEA-IIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
             +V + D EIT ++  +I ERE  I++++  I ++NEIFKDL +++HEQG +ID I +N+E
Sbjct:   152 QVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVE 211

Query:    61 SSHASTAQATTQLAKASKIQK 81
             S+     QA  QL++A+  Q+
Sbjct:   212 SAEVHVQQANQQLSRAANYQR 232

GO:0000149 "SNARE binding" evidence=IPI

GO:0005484 "SNAP receptor activity" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005765 "lysosomal membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IBA

GO:0006906 "vesicle fusion" evidence=IDA

GO:0008333 "endosome to lysosome transport" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0031201 "SNARE complex" evidence=IDA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IDA

GO:0032403 "protein complex binding" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

UNIPROTKB|Q3ZBT5 STX7 "Syntaxin-7" [Bos taurus (taxid:9913)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 33/78 (42%), Positives = 55/78 (70%)

Query:     5 LLDNEITFNEA-IIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSH 63
             L D EIT ++  +I+ERE  I++++  I ++NEIFKDL +++HEQG +ID I +N+E++ 
Sbjct:   155 LQDEEITEDDLRLIQERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAE 214

Query:    64 ASTAQATTQLAKASKIQK 81
                 QA  QL++A+  Q+
Sbjct:   215 VHVQQANQQLSRAADYQR 232

GO:0031201 "SNARE complex" evidence=IBA

GO:0016079 "synaptic vesicle exocytosis" evidence=IBA

GO:0006886 "intracellular protein transport" evidence=IBA

GO:0005484 "SNAP receptor activity" evidence=IBA

GO:0000149 "SNARE binding" evidence=IBA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93654	SYP22_ARATH	No assigned EC number	0.7263	0.8878	0.3544	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015706001	SubName- Full=Putative uncharacterized protein (Chromosome chr2 scaffold_11, whole genome shotgun sequence); (274 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00034698001	SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (241 aa)					•		•		0.465
	GSVIVG00014287001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (568 aa)					•		•		0.429

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	107
pfam05739	62	pfam05739, SNARE, SNARE domain	2e-15
COG5325	283	COG5325, COG5325, t-SNARE complex subunit, syntaxi	4e-15
smart00397	66	smart00397, t_SNARE, Helical region found in SNARE	8e-10
cd00193	60	cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se	5e-09
COG5074	280	COG5074, COG5074, t-SNARE complex subunit, syntaxi	1e-06

>gnl|CDD|203323 pfam05739, SNARE, SNARE domain

 Score = 64.5 bits (158), Expect = 2e-15
 Identities = 19/62 (30%), Positives = 40/62 (64%)

Query: 20 REQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79
          R++ ++E++  I E+ ++F D+   V EQG ++D I  N++++ +   +A  +L KA++ 
Sbjct: 1  RDEALEELESSIGELKQLFLDMGEEVEEQGELLDRIDDNVDNTQSRVERANKRLKKAARY 60

Query: 80 QK 81
          QK
Sbjct: 61 QK 62

Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. Length = 62

>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

 Score = 68.3 bits (167), Expect = 4e-15
 Identities = 37/105 (35%), Positives = 61/105 (58%)

Query: 1   QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIE 60
           Q+  L + E+ + + +I ER++ IK +   I E+NEIF+DL  LV EQG ++D I  NIE
Sbjct: 174 QQQGLSNEELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIE 233

Query: 61  SSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVIILI 105
           ++  +   A  +L KA   Q+ +      LL+I  ++LL V ++ 
Sbjct: 234 NTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVVLLFVSLIK 278

Length = 283

>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs

 Score = 50.3 bits (121), Expect = 8e-10
 Identities = 19/65 (29%), Positives = 38/65 (58%)

Query: 12 FNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATT 71
             A  EER++ ++++++ I E+ +IF D+   + EQG  +D I  N++ +  +  +A  
Sbjct: 2  QALAREEERDEELEQLEKSIQELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANK 61

Query: 72 QLAKA 76
          +L KA
Sbjct: 62 RLKKA 66

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs". Length = 66

>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

 Score = 47.9 bits (115), Expect = 5e-09
 Identities = 19/60 (31%), Positives = 38/60 (63%)

Query: 17 IEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76
           +ER++ +++++  I E+ +IF DL   V EQG ++D I  N++++  +  +A  +L KA
Sbjct: 1  EQERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60

Length = 60

>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 17  IEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76
           ++ R Q IK+I++ ++E+ ++F D+  LV EQ   +D I  N+E +  +  Q      KA
Sbjct: 180 VQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKA 239

Query: 77  SKIQKSS--SSLSCLLLVIFGIILLIVIILIV 106
            K  +++    + C  +    II+++V++  V
Sbjct: 240 VKSARAARKKKIRCYGICFIIIIVIVVVVFKV 271

Length = 280

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	107
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	99.95
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	99.94
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	99.91
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	99.9
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	99.8
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	99.74
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	99.73
cd00193	60	t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu	99.6
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	99.56
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	99.54
KOG3894	316	consensus SNARE protein Syntaxin 18/UFE1 [Intracel	99.2
KOG3385	118	consensus V-SNARE [Intracellular trafficking, secr	99.14
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	98.2
KOG3065	273	consensus SNAP-25 (synaptosome-associated protein)	97.93
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	97.92
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	97.61
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	97.09
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	96.95
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	96.87
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	96.6
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	96.46
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	95.76
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	95.56
KOG3208	231	consensus SNARE protein GS28 [Intracellular traffi	95.25
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	95.1
KOG2678	244	consensus Predicted membrane protein [Function unk	95.08
PF11166	98	DUF2951: Protein of unknown function (DUF2951); In	94.49
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	94.35
KOG3251	213	consensus Golgi SNAP receptor complex member [Intr	93.41
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	93.29
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	92.52
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	91.74
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	91.56
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	91.11
PRK11637	428	AmiB activator; Provisional	89.7
KOG3065	273	consensus SNAP-25 (synaptosome-associated protein)	89.11
PF06072	60	Herpes_US9: Alphaherpesvirus tegument protein US9;	89.02
PF03904	230	DUF334: Domain of unknown function (DUF334); Inter	88.03
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	87.99
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	87.74
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	87.68
PRK00295	68	hypothetical protein; Provisional	86.38
PF09548	170	Spore_III_AB: Stage III sporulation protein AB (sp	85.78
TIGR02833	170	spore_III_AB stage III sporulation protein AB. A c	85.46
PRK08307	171	stage III sporulation protein SpoAB; Provisional	85.42
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	85.25
PRK02793	72	phi X174 lysis protein; Provisional	85.23
PRK04325	74	hypothetical protein; Provisional	85.2
PRK00736	68	hypothetical protein; Provisional	84.91
PRK02119	73	hypothetical protein; Provisional	84.9
PRK11637	428	AmiB activator; Provisional	84.65
PF04505	82	Dispanin: Interferon-induced transmembrane protein	84.23
PF01519	102	DUF16: Protein of unknown function DUF16; InterPro	83.01
PLN03160	219	uncharacterized protein; Provisional	82.91
KOG3894	316	consensus SNARE protein Syntaxin 18/UFE1 [Intracel	81.2
PF00523	490	Fusion_gly: Fusion glycoprotein F0; InterPro: IPR0	80.84
KOG0859	217	consensus Synaptobrevin/VAMP-like protein [Intrace	80.8
PF01601	610	Corona_S2: Coronavirus S2 glycoprotein; InterPro:	80.52
PHA02844	75	putative transmembrane protein; Provisional	80.47

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=6.2e-27  Score=170.50  Aligned_cols=105  Identities=42%  Similarity=0.665  Sum_probs=96.0

Q ss_pred             hhhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038503            2 EVVLLDNE-ITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQ   80 (107)
Q Consensus         2 ~~~~~~~~-~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~   80 (107)
                      |.+..+++ .+++..++++|.+.+.+|+++|.|+++||+||+.+|++||+++|+||+|+++|..|++.|+.+|.+|.+|+
T Consensus       159 e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq  238 (269)
T KOG0811|consen  159 EEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQ  238 (269)
T ss_pred             HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666 78899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcchhhHHHHHHHHHHHHHHHHHHHh
Q 038503           81 KSSSSLSCLLLVIFGIILLIVIILIV  106 (107)
Q Consensus        81 ~~~rk~~~~~~~i~~ii~~i~~~~~~  106 (107)
                      +++||++|+++++++++++++.++++
T Consensus       239 ~~~~k~~~~ll~v~~~v~lii~l~i~  264 (269)
T KOG0811|consen  239 RKARKKKCILLLVGGPVGLIIGLIIA  264 (269)
T ss_pred             HHhcCchhhhhHHHHHHHHHHHHHHH
Confidence            99999999888888777777766654

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.3e-26  Score=167.83  Aligned_cols=94  Identities=34%  Similarity=0.569  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHH
Q 038503           12 FNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLL   91 (107)
Q Consensus        12 ~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~   91 (107)
                      --...+++|+.++++||++|.+|++||.||+.+|..||+|+|+||.||.+|.+|+++|+.++++|.+|++++|||+||++
T Consensus       196 ~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~i  275 (297)
T KOG0810|consen  196 QTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIII  275 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeee
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHH
Q 038503           92 VIFGIILLIVIILI  105 (107)
Q Consensus        92 ~i~~ii~~i~~~~~  105 (107)
                      ++++|+++|+++++
T Consensus       276 i~~iii~~v~v~~i  289 (297)
T KOG0810|consen  276 IILIIIIVVLVVVI  289 (297)
T ss_pred             hHHHHHHHHHhhhh
Confidence            88888777776665

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=99.91  E-value=8.8e-24  Score=152.83  Aligned_cols=105  Identities=35%  Similarity=0.551  Sum_probs=96.4

Q ss_pred             ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038503            1 QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQ   80 (107)
Q Consensus         1 ~~~~~~~~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~   80 (107)
                      |+..+...+.+|+..++.+|++++.+|+++|.+|+++|.||+++|.+||+.+|+||.|++++..|++.|+++|.+|..|+
T Consensus       174 qq~~l~~ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hq  253 (283)
T COG5325         174 QQQGLSNEELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQ  253 (283)
T ss_pred             HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHH
Confidence            35566778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcchhhHHHHHHHHHHHHHHHHHHH
Q 038503           81 KSSSSLSCLLLVIFGIILLIVIILI  105 (107)
Q Consensus        81 ~~~rk~~~~~~~i~~ii~~i~~~~~  105 (107)
                      |+++||..|++++++|+.+++++++
T Consensus       254 rrt~k~~~~~Llil~vv~lfv~l~~  278 (283)
T COG5325         254 RRTKKCRFYLLLILLVVLLFVSLIK  278 (283)
T ss_pred             hhhccchhhHHHHHHHHHHHHHHHH
Confidence            9999999988888877776666553

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.2e-23  Score=151.93  Aligned_cols=93  Identities=34%  Similarity=0.632  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHH
Q 038503           13 NEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLLV   92 (107)
Q Consensus        13 ~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~   92 (107)
                      +++...+|++++.++.++|.+|+++|.||+.+|.+||..+|+||+|++++..+++.|.++|.||..|||+++|++||+++
T Consensus       209 ~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L  288 (305)
T KOG0809|consen  209 NEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILML  288 (305)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHH
Q 038503           93 IFGIILLIVIILI  105 (107)
Q Consensus        93 i~~ii~~i~~~~~  105 (107)
                      +++|+++++++++
T Consensus       289 ~l~ii~llvllil  301 (305)
T KOG0809|consen  289 TLLIIALLVLLIL  301 (305)
T ss_pred             HHHHHHHHHHHHh
Confidence            8877776666654

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=99.80  E-value=8.9e-19  Score=124.62  Aligned_cols=94  Identities=26%  Similarity=0.381  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHH
Q 038503           11 TFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLL   90 (107)
Q Consensus        11 ~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~   90 (107)
                      .--...+++|++++++||++|.+|-++|++|+++|.+|.+++|.|+.|+.+++.|++.|+..+.+|.++.+++||++|+|
T Consensus       174 ktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c  253 (280)
T COG5074         174 KTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRC  253 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceeh
Confidence            34467789999999999999999999999999999999999999999999999999999999999999999999988766


Q ss_pred             HHHHHHHHHHHHHH
Q 038503           91 LVIFGIILLIVIIL  104 (107)
Q Consensus        91 ~~i~~ii~~i~~~~  104 (107)
                      +.|++|+++++..+
T Consensus       254 ~gI~~iii~viv~v  267 (280)
T COG5074         254 YGICFIIIIVIVVV  267 (280)
T ss_pred             hhhHHHHHHHHHHH
Confidence            66665554444443

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=5.1e-17  Score=118.40  Aligned_cols=97  Identities=30%  Similarity=0.531  Sum_probs=81.7

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503            2 EVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK   81 (107)
Q Consensus         2 ~~~~~~~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~   81 (107)
                      |+++++..    ++++++|...+.+||.+|.||.++|.+|++||.+|||++.+||+||+.+..|++.|..+|.|....-+
T Consensus       211 Qm~ll~es----~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vS  286 (311)
T KOG0812|consen  211 QMALLDES----DEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVS  286 (311)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhc
Confidence            44555544    78999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHH
Q 038503           82 SSSSLSCLLLVIFGIILLIVIILI  105 (107)
Q Consensus        82 ~~rk~~~~~~~i~~ii~~i~~~~~  105 (107)
                      ++|..   ++-+|+|++++|++|+
T Consensus       287 SNRwL---mvkiF~i~ivFflvfv  307 (311)
T KOG0812|consen  287 SNRWL---MVKIFGILIVFFLVFV  307 (311)
T ss_pred             cchHH---HHHHHHHHHHHHHHHH
Confidence            88854   4444444444444444

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=99.73  E-value=8.1e-17  Score=93.92  Aligned_cols=63  Identities=32%  Similarity=0.566  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503           19 EREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK   81 (107)
Q Consensus        19 er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~   81 (107)
                      +|+++++.|++++.+|+++|.+|+.+|.+|+++||+|++|++.|..++.+|+.+|.+|.+|+|
T Consensus         1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k   63 (63)
T PF05739_consen    1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK   63 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            689999999999999999999999999999999999999999999999999999999999975

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

Probab=99.60  E-value=7.6e-15  Score=84.08  Aligned_cols=59  Identities=32%  Similarity=0.616  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           18 EEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA   76 (107)
Q Consensus        18 ~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A   76 (107)
                      ++|++++.+|++++.+++++|.+|+.+|.+|++++|+|++|++.+..++..|..+|.+|
T Consensus         2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka   60 (60)
T cd00193           2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA   60 (60)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            68999999999999999999999999999999999999999999999999999999875

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=1.8e-13  Score=98.43  Aligned_cols=97  Identities=22%  Similarity=0.524  Sum_probs=85.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 038503            8 NEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLS   87 (107)
Q Consensus         8 ~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~   87 (107)
                      ....++..++++++++++.|+++++.++++...++.++.+|+.++|+.++.++.+...+.++.+.+.+..+ .++.+.+|
T Consensus       138 ~~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~s~~~~~  216 (235)
T KOG3202|consen  138 EIVQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MASQCSQW  216 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhccccch
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999 56666666


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 038503           88 CLLLVIFGIILLIVIILI  105 (107)
Q Consensus        88 ~~~~~i~~ii~~i~~~~~  105 (107)
                      |+++++++++++++++|+
T Consensus       217 ~~il~l~~~~~lvv~i~~  234 (235)
T KOG3202|consen  217 CAILLLVGLLLLVVIIFI  234 (235)
T ss_pred             hHHHHHHHHHHHHHHHhc
Confidence            767777766666666654

>smart00397 t_SNARE Helical region found in SNAREs

Probab=99.54  E-value=1e-13  Score=80.57  Aligned_cols=64  Identities=28%  Similarity=0.551  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           13 NEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA   76 (107)
Q Consensus        13 ~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A   76 (107)
                      ..+.+++|+++++++++++.+++++|.+++.+|.+|++++|+|+++++.+..++..|..+|.+|
T Consensus         3 ~~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~   66 (66)
T smart00397        3 ADQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA   66 (66)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence            4678999999999999999999999999999999999999999999999999999999998764

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=5.5e-10  Score=82.72  Aligned_cols=97  Identities=16%  Similarity=0.208  Sum_probs=84.3

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503            2 EVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK   81 (107)
Q Consensus         2 ~~~~~~~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~   81 (107)
                      +++++++|...-...+++..++++.+++.+.++..+-..+++.|-.|...||.|-+++..|..|++.||+.+++|.+...
T Consensus       212 ~~Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~  291 (316)
T KOG3894|consen  212 QVQLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNG  291 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcc
Confidence            56778888666667777888999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cchhhHHHHHHHHHHHH
Q 038503           82 SSSSLSCLLLVIFGIIL   98 (107)
Q Consensus        82 ~~rk~~~~~~~i~~ii~   98 (107)
                      +.|+|..++++++.+++
T Consensus       292 ~~r~~~lf~llvlsf~l  308 (316)
T KOG3894|consen  292 GLRVFLLFFLLVLSFSL  308 (316)
T ss_pred             cchhHHHHHHHHHHHHH
Confidence            88887665555554443

>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=6.1e-10  Score=71.76  Aligned_cols=90  Identities=18%  Similarity=0.301  Sum_probs=75.6

Q ss_pred             hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 038503           11 TFNEAII-EEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCL   89 (107)
Q Consensus        11 ~~~~~~i-~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~   89 (107)
                      .++.+.. +|.++.++++...+..|+.+.-+++.+|..|+.++|.+++..+.+...+.++...++...+.  ++++.+||
T Consensus        24 s~~~~~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~--sg~~l~~~  101 (118)
T KOG3385|consen   24 SSHLASLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR--SGISLLCW  101 (118)
T ss_pred             hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc--CCcchHHH
Confidence            3445555 77778899999999999999999999999999999999999999999999999999888877  67777777


Q ss_pred             HHHHHHHHHHHHH
Q 038503           90 LLVIFGIILLIVI  102 (107)
Q Consensus        90 ~~~i~~ii~~i~~  102 (107)
                      +++.++|.++++.
T Consensus       102 m~~f~lV~~fi~~  114 (118)
T KOG3385|consen  102 MAVFSLVAFFILW  114 (118)
T ss_pred             HHHHHHHHHHHhh
Confidence            7666555544443

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=98.20  E-value=0.0002  Score=44.12  Aligned_cols=52  Identities=21%  Similarity=0.356  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQL   73 (107)
Q Consensus        22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL   73 (107)
                      +.+.++...+.+++++..+=-..+-+-|+.++.+++..+.-......-.+.=
T Consensus         3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a   54 (89)
T PF00957_consen    3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNA   54 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHH
Confidence            5678899999999999888888888999999999987666555555444333

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.93  E-value=7.6e-05  Score=55.11  Aligned_cols=57  Identities=12%  Similarity=0.278  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           19 EREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAK   75 (107)
Q Consensus        19 er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~   75 (107)
                      +-+..+..|...+..|+.|..+++.+++.|++.||+|+++++....+|...++.+++
T Consensus       215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k  271 (273)
T KOG3065|consen  215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK  271 (273)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence            567789999999999999999999999999999999999999999999999988765

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.92  E-value=0.00099  Score=43.26  Aligned_cols=44  Identities=20%  Similarity=0.391  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 038503           20 REQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSH   63 (107)
Q Consensus        20 r~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~   63 (107)
                      .++.++..+..+.++.+++.+=-.=|-+-|+-+|.+++..++-.
T Consensus        27 ~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~   70 (116)
T KOG0860|consen   27 ANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQ   70 (116)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHH
Confidence            46678899999999999999988889999999999987655433

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=97.61  E-value=0.0072  Score=43.90  Aligned_cols=52  Identities=12%  Similarity=0.237  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           25 KEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA   76 (107)
Q Consensus        25 ~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A   76 (107)
                      +++-.-...|++-...++..+.+-...+++.+..++.....+......|+.-
T Consensus       170 ~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~  221 (251)
T PF09753_consen  170 EEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEH  221 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555567777778889999999999999999999999999999998664

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.043  Score=40.63  Aligned_cols=88  Identities=23%  Similarity=0.214  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHH
Q 038503           13 NEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLLV   92 (107)
Q Consensus        13 ~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~   92 (107)
                      ..+-+++=+.+|..++.-..+|..|..+=+..|+.=.+.+++-..|++.+..++.+|.+.=+++.+..   .-..|++++
T Consensus       178 R~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~---~~ll~v~~~  254 (269)
T KOG0811|consen  178 REQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKK---CILLLVGGP  254 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch---hhhhHHHHH
Confidence            56677888888999999999999999999999999999999999999999999999987655544432   445566666


Q ss_pred             HHHHHHHHHHH
Q 038503           93 IFGIILLIVII  103 (107)
Q Consensus        93 i~~ii~~i~~~  103 (107)
                      +++++.++++.
T Consensus       255 v~lii~l~i~~  265 (269)
T KOG0811|consen  255 VGLIIGLIIAG  265 (269)
T ss_pred             HHHHHHHHHHH
Confidence            66666555544

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=96.95  E-value=0.035  Score=33.95  Aligned_cols=55  Identities=9%  Similarity=0.065  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038503           28 QEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKS   82 (107)
Q Consensus        28 e~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~   82 (107)
                      .+--.++.+.-.-+..-++.=-+-=+++|.-.+.|+.=...|..--+.|.+-+++
T Consensus         6 ~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~   60 (89)
T PF00957_consen    6 EQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRK   60 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3333344444444444443333333344444444444444444333444444443

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.87  E-value=0.044  Score=41.08  Aligned_cols=68  Identities=16%  Similarity=0.209  Sum_probs=50.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503            9 EITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA   76 (107)
Q Consensus         9 ~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A   76 (107)
                      |++-.-..++.=.+.+.+|+.--.++..+-..=+.+|+.=...+.+-.++|+.+.+++++|...=++|
T Consensus       200 Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkka  267 (297)
T KOG0810|consen  200 EIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKA  267 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444556667777888888888888888888888888888888888888888888888885443333

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=96.60  E-value=0.086  Score=38.41  Aligned_cols=64  Identities=17%  Similarity=0.232  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           13 NEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA   76 (107)
Q Consensus        13 ~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A   76 (107)
                      .-+.++.=.+.+.+|..-..++.++..+=..+|+.=...+.+.+.|++.+..++++|.+..++|
T Consensus       183 Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaa  246 (280)
T COG5074         183 RHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAA  246 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHH
Confidence            3444555555666666666666777777777888777888889999999999999998774333

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=96.46  E-value=0.15  Score=37.89  Aligned_cols=83  Identities=17%  Similarity=0.275  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHH
Q 038503           13 NEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLLV   92 (107)
Q Consensus        13 ~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~   92 (107)
                      ..+.+..=.+++.++..-..++..+..+=+.+|..=...|++..+|+..|...+.+|...=+    ..++.+..+.++++
T Consensus       193 r~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqr----rt~k~~~~~Llil~  268 (283)
T COG5325         193 RDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQR----RTKKCRFYLLLILL  268 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHh----hhccchhhHHHHHH
Confidence            56677777888888888888888888888888888888888888888888888888885544    44445665555555


Q ss_pred             HHHHHHH
Q 038503           93 IFGIILL   99 (107)
Q Consensus        93 i~~ii~~   99 (107)
                      +++.+++
T Consensus       269 vv~lfv~  275 (283)
T COG5325         269 VVLLFVS  275 (283)
T ss_pred             HHHHHHH
Confidence            5544333

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.76  E-value=0.47  Score=34.05  Aligned_cols=74  Identities=11%  Similarity=0.163  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 038503           22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGI   96 (107)
Q Consensus        22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~i   96 (107)
                      +.++.=.+...+--++..+|-.-++.|-+.+.+--.-.-.+.+|+.++.+-|..-.+.--++ |+.|+.++++.+
T Consensus       135 ~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~n-k~~~~aii~~l~  208 (220)
T KOG1666|consen  135 DRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRN-KFTLTAIIALLV  208 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            34555566667888888899999999999999988888888888888888776665543333 333433333333

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=95.56  E-value=0.29  Score=30.23  Aligned_cols=61  Identities=8%  Similarity=0.123  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 038503           24 IKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSS   84 (107)
Q Consensus        24 i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~r   84 (107)
                      +....+.+.+--+-...-...+.+|.+.+....+.......-+..+.+=+.+..+..+.-+
T Consensus        10 L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~   70 (92)
T PF03908_consen   10 LRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDR   70 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            3444444444444445555677888899999999999888888888887777666655444

>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.25  E-value=0.62  Score=33.59  Aligned_cols=80  Identities=14%  Similarity=0.145  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Q 038503           23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVI  102 (107)
Q Consensus        23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~~  102 (107)
                      .+.+=-+-+.++-++...--.-.+.|+.++..|...+.++....=.-+.=|.+...++++.   .  +++-.+|-+++++
T Consensus       150 ~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrd---s--lILa~Vis~C~ll  224 (231)
T KOG3208|consen  150 HINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRD---S--LILAAVISVCTLL  224 (231)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhh---h--HHHHHHHHHHHHH
Confidence            4555555666666777777777889999999999999999888766665555554433222   2  3333344445555


Q ss_pred             HHHhC
Q 038503          103 ILIVA  107 (107)
Q Consensus       103 ~~~~~  107 (107)
                      ++++|
T Consensus       225 llfy~  229 (231)
T KOG3208|consen  225 LLFYW  229 (231)
T ss_pred             HHHHH
Confidence            55555

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=95.10  E-value=0.32  Score=27.95  Aligned_cols=57  Identities=11%  Similarity=0.158  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI   79 (107)
Q Consensus        23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~   79 (107)
                      .+..-.+.+.+..++..+....+..|++.+.++...+..+..++..++.-+.+..+.
T Consensus         9 ~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR   65 (66)
T PF12352_consen    9 SLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR   65 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence            678888889999999999999999999999999999999999999999888776553

>KOG2678 consensus Predicted membrane protein [Function unknown]

Probab=95.08  E-value=0.88  Score=32.95  Aligned_cols=67  Identities=12%  Similarity=0.189  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Q 038503           33 EVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIV  101 (107)
Q Consensus        33 ~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~  101 (107)
                      .++........-+.+=.+.+-.-+.-++.....+...+..+++-.+...  ..|..+.++|+.++.+|+
T Consensus       166 slKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~--s~wf~~~miI~v~~sFVs  232 (244)
T KOG2678|consen  166 SLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKL--SYWFYITMIIFVILSFVS  232 (244)
T ss_pred             HHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhh--hHHHHHHHHHHHHHHHHH
Confidence            3455555566677777888888888888888888888877766554432  333333334443333333

>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function

Probab=94.49  E-value=0.7  Score=29.03  Aligned_cols=81  Identities=14%  Similarity=0.181  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hhHHHHHHHHHHH
Q 038503           19 EREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSS-SLSCLLLVIFGII   97 (107)
Q Consensus        19 er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~r-k~~~~~~~i~~ii   97 (107)
                      +.+..+..||..-..+..=+.++..=.+.|...-+..+.+++.-... ..-.++.++...  |.-+ -++|++.++..|+
T Consensus         8 e~e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~re-Re~dee~k~~n~--Knir~~KmwilGlvgTi~   84 (98)
T PF11166_consen    8 EHEWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINRE-REEDEENKKKND--KNIRDIKMWILGLVGTIF   84 (98)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHH
Confidence            44566888888888888888888888899999999988888874332 112222222111  1222 2567776666665


Q ss_pred             HHHHH
Q 038503           98 LLIVI  102 (107)
Q Consensus        98 ~~i~~  102 (107)
                      ..+++
T Consensus        85 gslii   89 (98)
T PF11166_consen   85 GSLII   89 (98)
T ss_pred             HHHHH
Confidence            54443

It has a highly conserved sequence.

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=94.35  E-value=1.4  Score=31.95  Aligned_cols=58  Identities=7%  Similarity=0.165  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 038503           25 KEIQEQISEVNEIFKDLAVLVHEQGVMIDD----ISSNIESSHASTAQATTQLAKASKIQKSSSS   85 (107)
Q Consensus        25 ~~le~~i~~l~~l~~~l~~~V~~Qge~id~----Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk   85 (107)
                      ++|..++..+..-.++=+...   +..|..    ++.....+..|...-..+=.+..+|.+++.+
T Consensus       166 E~L~~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~  227 (251)
T PF09753_consen  166 EDLTEEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG  227 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            355555555444444332222   333333    4444555555555555555566666655555

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.41  E-value=2.1  Score=30.72  Aligned_cols=77  Identities=8%  Similarity=0.064  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 038503           23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILL   99 (107)
Q Consensus        23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~   99 (107)
                      .+++-++.+.++-.....+-.-+.+|+..+-.+-..+-....-+.=.+.-+.-..+..+.-+..+|+.+++++|+++
T Consensus       130 ~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v~~y  206 (213)
T KOG3251|consen  130 SLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVILTLVIMY  206 (213)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            45556666666666667777777889988888888888888888777777877777766666555555544444433

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.29  E-value=2.1  Score=32.23  Aligned_cols=86  Identities=14%  Similarity=0.291  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh---cchhhHHHHHHHHH
Q 038503           20 REQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI-QK---SSSSLSCLLLVIFG   95 (107)
Q Consensus        20 r~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~-~~---~~rk~~~~~~~i~~   95 (107)
                      -++...+=|+.+..+.+=..|++++..+=+.++-.=-.-+|...-|+++..-.++.|.+- +|   .-|+-.-+.+++++
T Consensus       209 ~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L  288 (305)
T KOG0809|consen  209 NEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILML  288 (305)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHH
Confidence            333444555555555555555555555555555554455555555555555555555433 11   11223345555555


Q ss_pred             HHHHHHHHHH
Q 038503           96 IILLIVIILI  105 (107)
Q Consensus        96 ii~~i~~~~~  105 (107)
                      ++++|+++++
T Consensus       289 ~l~ii~llvl  298 (305)
T KOG0809|consen  289 TLLIIALLVL  298 (305)
T ss_pred             HHHHHHHHHH
Confidence            5555555444

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=92.52  E-value=0.43  Score=27.43  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=10.7

Q ss_pred             HhhcchhhHHHHHHHHHHHHHHHH
Q 038503           79 IQKSSSSLSCLLLVIFGIILLIVI  102 (107)
Q Consensus        79 ~~~~~rk~~~~~~~i~~ii~~i~~  102 (107)
                      .+++.++..+++++++++++++.+
T Consensus        31 ~qk~~~~~~~i~~~~~i~~l~v~~   54 (59)
T PF09889_consen   31 RQKRMRKTQYIFFGIFILFLAVWI   54 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445555444444444433

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=91.74  E-value=7.4  Score=32.97  Aligned_cols=25  Identities=16%  Similarity=0.179  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           55 ISSNIESSHASTAQATTQLAKASKI   79 (107)
Q Consensus        55 Ie~nv~~a~~~v~~~~~eL~~A~~~   79 (107)
                      +.+-...+...+.......++...|
T Consensus       388 ~s~~~~~~~~~~~~~~~~~~~y~~y  412 (806)
T PF05478_consen  388 ISDILNNTERSSRSFEDEYEKYDSY  412 (806)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHH
Confidence            3333444444444444444444444

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.56  E-value=2.6  Score=27.44  Aligned_cols=6  Identities=17%  Similarity=0.456  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 038503           68 QATTQL   73 (107)
Q Consensus        68 ~~~~eL   73 (107)
                      ++...|
T Consensus        78 ~~A~kl   83 (116)
T KOG0860|consen   78 KTAVKL   83 (116)
T ss_pred             HHHHHH
Confidence            333333

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=91.11  E-value=2  Score=25.19  Aligned_cols=50  Identities=18%  Similarity=0.272  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 038503           21 EQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQAT   70 (107)
Q Consensus        21 ~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~   70 (107)
                      .+.+..||..+.-.-+...+++..|..|...||++...+..-...+....
T Consensus         3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35688899999999999999999999999999999998888887777654

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PRK11637 AmiB activator; Provisional

Probab=89.70  E-value=8.2  Score=30.05  Aligned_cols=51  Identities=20%  Similarity=0.307  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           24 IKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLA   74 (107)
Q Consensus        24 i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~   74 (107)
                      +..+++.+..+..-..++...+..-..-++..+..+..++..+......+.
T Consensus        77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~  127 (428)
T PRK11637         77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA  127 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444444443

>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.11  E-value=7.6  Score=28.91  Aligned_cols=50  Identities=18%  Similarity=0.225  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           30 QISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI   79 (107)
Q Consensus        30 ~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~   79 (107)
                      .+.+.......-..++.+|++.|++||.+++........+-+.|..-..+
T Consensus        87 ~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~~  136 (273)
T KOG3065|consen   87 LAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKGL  136 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            34455666677788999999999999999999999999998888655544

>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses

Probab=89.02  E-value=1.7  Score=24.94  Aligned_cols=14  Identities=29%  Similarity=0.295  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHh
Q 038503           67 AQATTQLAKASKIQ   80 (107)
Q Consensus        67 ~~~~~eL~~A~~~~   80 (107)
                      +.|+.-|.+.-++|
T Consensus         9 ETA~~FL~RvGr~q   22 (60)
T PF06072_consen    9 ETATEFLRRVGRQQ   22 (60)
T ss_pred             ccHHHHHHHHhHHH
Confidence            44555666666655

The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument

>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function

Probab=88.03  E-value=8.3  Score=27.99  Aligned_cols=76  Identities=14%  Similarity=0.156  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503           18 EEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDIS----------------SNIESSHASTAQATTQLAKASKIQK   81 (107)
Q Consensus        18 ~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie----------------~nv~~a~~~v~~~~~eL~~A~~~~~   81 (107)
                      ..|.++.++|-.++.+-..=|.+-+.-+  |..-++.+-                .++....+..++..++++.+.+.-+
T Consensus        67 d~reK~~~~I~ssL~eTtkdf~~~~~k~--~~dF~~~Lq~~Lk~V~tde~k~~~~~ei~k~r~e~~~ml~evK~~~E~y~  144 (230)
T PF03904_consen   67 DIREKNLKEIKSSLEETTKDFIDKTEKV--HNDFQDILQDELKDVDTDELKNIAQNEIKKVREENKSMLQEVKQSHEKYQ  144 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556666666666555555543332  333333332                2334445556667777777777766


Q ss_pred             cchhhHHHHHHHHH
Q 038503           82 SSSSLSCLLLVIFG   95 (107)
Q Consensus        82 ~~rk~~~~~~~i~~   95 (107)
                      ++.+.++..+..++
T Consensus       145 k~~k~~~~gi~aml  158 (230)
T PF03904_consen  145 KRQKSMYKGIGAML  158 (230)
T ss_pred             HHHHHHHHhHHHHH
Confidence            66666664444433

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=87.99  E-value=5.2  Score=26.41  Aligned_cols=52  Identities=19%  Similarity=0.290  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQL   73 (107)
Q Consensus        22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL   73 (107)
                      ..|+.+..++.+..++...+...|.+=++-+++|.+.++..+.-+..=-..+
T Consensus        68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki  119 (126)
T PF07889_consen   68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI  119 (126)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466777777777777777777777777777777777666665555443333

The region featured in this family is approximately 100 amino acids long.

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=87.74  E-value=3.9  Score=23.95  Aligned_cols=38  Identities=13%  Similarity=0.131  Sum_probs=23.4

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           42 AVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI   79 (107)
Q Consensus        42 ~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~   79 (107)
                      ..-++...+-++.+|.+-+.....+...+++|.+-...
T Consensus        12 e~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n   49 (71)
T PF10779_consen   12 ETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN   49 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455666777777766666667777777655543

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=87.68  E-value=1.5  Score=28.68  Aligned_cols=37  Identities=11%  Similarity=0.390  Sum_probs=24.6

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503            4 VLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKD   40 (107)
Q Consensus         4 ~~~~~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~   40 (107)
                      ..++..++.-.+++=|+.+++.+|..++.++++||..
T Consensus        78 ~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~  114 (120)
T PF12325_consen   78 EELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYRE  114 (120)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555666777777777777777777777765

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PRK00295 hypothetical protein; Provisional

Probab=86.38  E-value=4.8  Score=23.56  Aligned_cols=47  Identities=11%  Similarity=0.196  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038503           23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQA   69 (107)
Q Consensus        23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~   69 (107)
                      .+..||..+.-.-+...+++..|..|...||.+...+..-...+...
T Consensus         6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~   52 (68)
T PRK00295          6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM   52 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            48899999999999999999999999999999998887776666553

>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []

Probab=85.78  E-value=4.3  Score=27.75  Aligned_cols=36  Identities=31%  Similarity=0.305  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Q 038503           66 TAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIV  101 (107)
Q Consensus        66 v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~  101 (107)
                      .++=..++..|.+..+++.|.+-++.+++++.++|+
T Consensus       133 ~~~L~~~~~~a~~~~~~~~Klyr~LGvl~G~~lvIl  168 (170)
T PF09548_consen  133 LEQLEQQLEEAREEAKKKGKLYRSLGVLGGLFLVIL  168 (170)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            333344455566555555554444444444443333

A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>TIGR02833 spore_III_AB stage III sporulation protein AB

Probab=85.46  E-value=4.5  Score=27.78  Aligned_cols=34  Identities=24%  Similarity=0.390  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Q 038503           67 AQATTQLAKASKIQKSSSSLSCLLLVIFGIILLI  100 (107)
Q Consensus        67 ~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i  100 (107)
                      +.=..++..|.+.++++.|.+-++-+++++.++|
T Consensus       134 ~~L~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lvI  167 (170)
T TIGR02833       134 EHLERQLTEAEDEQKKNEKMYRYLGVLVGLMIVL  167 (170)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            3334455566666666666544454444444333

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.

>PRK08307 stage III sporulation protein SpoAB; Provisional

Probab=85.42  E-value=4.5  Score=27.80  Aligned_cols=34  Identities=18%  Similarity=0.268  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Q 038503           67 AQATTQLAKASKIQKSSSSLSCLLLVIFGIILLI  100 (107)
Q Consensus        67 ~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i  100 (107)
                      +.=..++.+|.+.++++.|.+-++-+++++.++|
T Consensus       135 e~L~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lvI  168 (171)
T PRK08307        135 EHLEREEEEAEEEQKKNEKMYKYLGFLAGLLIVI  168 (171)
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            3334445566666666666544454444444333

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=85.25  E-value=22  Score=30.17  Aligned_cols=37  Identities=19%  Similarity=0.273  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHH
Q 038503           33 EVNEIFKDLAVLVHEQGVMIDD-ISSNIESSHASTAQA   69 (107)
Q Consensus        33 ~l~~l~~~l~~~V~~Qge~id~-Ie~nv~~a~~~v~~~   69 (107)
                      +++....+++..+..+.+.+-. +..++.....++.+.
T Consensus       361 ~ik~~l~~~~~~i~~~a~~i~~~~~~~~s~~~~~~~~~  398 (806)
T PF05478_consen  361 PIKRDLDSIGKQIRSQAKQIPNQIDSNISDILNNTERS  398 (806)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444433332 333444444444443

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>PRK02793 phi X174 lysis protein; Provisional

Probab=85.23  E-value=5.8  Score=23.47  Aligned_cols=48  Identities=10%  Similarity=0.199  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038503           21 EQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQ   68 (107)
Q Consensus        21 ~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~   68 (107)
                      ...+..||..+.-.-+...+|+..|..|...||.+...+..-...+..
T Consensus         7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~   54 (72)
T PRK02793          7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA   54 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            357888999999999999999999999999999988887777666554

>PRK04325 hypothetical protein; Provisional

Probab=85.20  E-value=6  Score=23.55  Aligned_cols=48  Identities=17%  Similarity=0.216  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038503           22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQA   69 (107)
Q Consensus        22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~   69 (107)
                      +.+..||..+.-.-+...+|+..|..|+..|+.+...+..-...+...
T Consensus         9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~   56 (74)
T PRK04325          9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA   56 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            348999999999999999999999999999999998877776666543

>PRK00736 hypothetical protein; Provisional

Probab=84.91  E-value=5.8  Score=23.20  Aligned_cols=47  Identities=11%  Similarity=0.253  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038503           22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQ   68 (107)
Q Consensus        22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~   68 (107)
                      ..+..||..+.-.-+...+|+..|..|...||.+...+..-.+.+..
T Consensus         5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~   51 (68)
T PRK00736          5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS   51 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34889999999999999999999999999999999887777666654

>PRK02119 hypothetical protein; Provisional

Probab=84.90  E-value=6.1  Score=23.45  Aligned_cols=51  Identities=18%  Similarity=0.279  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038503           18 EEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQ   68 (107)
Q Consensus        18 ~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~   68 (107)
                      ..=.+.+..||..+.-.-+...+|+..|..|...||.+...+..-...+..
T Consensus         5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~   55 (73)
T PRK02119          5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD   55 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334567889999999999999999999999999999998887777666644

>PRK11637 AmiB activator; Provisional

Probab=84.65  E-value=17  Score=28.31  Aligned_cols=74  Identities=16%  Similarity=0.276  Sum_probs=40.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503            6 LDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI   79 (107)
Q Consensus         6 ~~~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~   79 (107)
                      +..+++.....+++-..++.++++.+..+..=...+...+..-..-++.++..++.....+.....++....+.
T Consensus        52 l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~  125 (428)
T PRK11637         52 IQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL  125 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444455555555555555555555555566666666666666666666666666555544

>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression []

Probab=84.23  E-value=0.77  Score=27.91  Aligned_cols=32  Identities=16%  Similarity=0.251  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH
Q 038503           62 SHASTAQATTQLAKASKIQKSSSSLSCLLLVI   93 (107)
Q Consensus        62 a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i   93 (107)
                      .+.+-.....+...|.++.+++|++.++-+++
T Consensus        42 ~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~   73 (82)
T PF04505_consen   42 SKVRSRYAAGDYEGARRASRKAKKWSIIAIII   73 (82)
T ss_pred             hhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence            33444445556788888888887765544333

; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane

>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function

Probab=83.01  E-value=9.7  Score=24.26  Aligned_cols=49  Identities=20%  Similarity=0.302  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 038503           19 EREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTA   67 (107)
Q Consensus        19 er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~   67 (107)
                      ...+++..+...+....+-...+...+..||+.++.|...+..-..++.
T Consensus        50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD   98 (102)
T PF01519_consen   50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLD   98 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444555666666666666666666666677777666666555554443

It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.

>PLN03160 uncharacterized protein; Provisional

Probab=82.91  E-value=0.74  Score=32.93  Aligned_cols=8  Identities=25%  Similarity=0.542  Sum_probs=3.0

Q ss_pred             HHHHHHHh
Q 038503           99 LIVIILIV  106 (107)
Q Consensus        99 ~i~~~~~~  106 (107)
                      .+++++++
T Consensus        51 ~~v~~~l~   58 (219)
T PLN03160         51 ATTILVLV   58 (219)
T ss_pred             HHHHHhee
Confidence            33333333

>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.20  E-value=22  Score=27.08  Aligned_cols=82  Identities=20%  Similarity=0.286  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhhHHHHHHHHHHHHH
Q 038503           26 EIQEQISEVNEIFKDLAVLVHEQGVMIDD---ISSNIESSHASTAQATTQLAKASKIQK---SSSSLSCLLLVIFGIILL   99 (107)
Q Consensus        26 ~le~~i~~l~~l~~~l~~~V~~Qge~id~---Ie~nv~~a~~~v~~~~~eL~~A~~~~~---~~rk~~~~~~~i~~ii~~   99 (107)
                      .++.-+.++.++=..+-.+..-|..+-..   =+.|++--.+.+..+..+++.+++--+   .++.+.--+++++++++.
T Consensus       226 ~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvls  305 (316)
T KOG3894|consen  226 ELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLS  305 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHH
Confidence            44444555555555555556666655444   477888888888899999988876533   233333445566677777


Q ss_pred             HHHHHHhC
Q 038503          100 IVIILIVA  107 (107)
Q Consensus       100 i~~~~~~~  107 (107)
                      ++++++-|
T Consensus       306 f~lLFldw  313 (316)
T KOG3894|consen  306 FSLLFLDW  313 (316)
T ss_pred             HHHHHHhh
Confidence            77888777

>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses

Probab=80.84  E-value=3.6  Score=33.05  Aligned_cols=33  Identities=30%  Similarity=0.346  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 038503           51 MIDDISSNIESSHASTAQATTQLAKASKIQKSSS   84 (107)
Q Consensus        51 ~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~r   84 (107)
                      .+| |..+..++...++++...|+++.+.=.+..
T Consensus       433 PlD-IS~eL~~vn~sL~~A~~~L~~Sn~iL~~v~  465 (490)
T PF00523_consen  433 PLD-ISSELGQVNNSLNNAKDLLDKSNQILDSVN  465 (490)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345 666666666666666666666666544433

This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....

>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.80  E-value=6.6  Score=28.08  Aligned_cols=28  Identities=18%  Similarity=0.355  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 038503           24 IKEIQEQISEVNEIFKDLAVLVHEQGVM   51 (107)
Q Consensus        24 i~~le~~i~~l~~l~~~l~~~V~~Qge~   51 (107)
                      +-++...+.+++.++-+==+-|-+-||-
T Consensus       127 lskvkaqv~evk~vM~eNIekvldRGek  154 (217)
T KOG0859|consen  127 LAKVKAQVTEVKGVMMENIEKVLDRGEK  154 (217)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCe
Confidence            3444455555555554444444444443

>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein

Probab=80.52  E-value=0.54  Score=38.40  Aligned_cols=45  Identities=4%  Similarity=0.074  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhC
Q 038503           62 SHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVIILIVA  107 (107)
Q Consensus        62 a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~~~~~~~  107 (107)
                      .-.++....-+|++-.++. ..-||-||.++++++.+++++++++|
T Consensus       523 ~I~~LN~tlVdLe~Ln~~e-~YiKWPWyVWL~i~~~li~~~~~l~~  567 (610)
T PF01601_consen  523 VIDNLNNTLVDLEWLNRYE-TYIKWPWYVWLAIILALIAFALILLW  567 (610)
T ss_dssp             HHHHHHCCHHHCCHHTTCC-CHH-----------------------
T ss_pred             HHHHhhhhheeHHHhccee-EEeehHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555565555552 34477788888777777777777766

The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....

>PHA02844 putative transmembrane protein; Provisional

Probab=80.47  E-value=3.5  Score=24.73  Aligned_cols=20  Identities=15%  Similarity=0.277  Sum_probs=8.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHH
Q 038503           85 SLSCLLLVIFGIILLIVIIL  104 (107)
Q Consensus        85 k~~~~~~~i~~ii~~i~~~~  104 (107)
                      .+.+++++++++++++++++
T Consensus        47 ~~~~~ii~i~~v~~~~~~~f   66 (75)
T PHA02844         47 STKIWILTIIFVVFATFLTF   66 (75)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	107
1gl2_B	65	Crystal Structure Of An Endosomal Snare Core Comple		2e-10
2nps_B	71	Crystal Structure Of The Early Endosomal Snare Comp		2e-10
2xhe_B	279	Crystal Structure Of The Unc18-Syntaxin 1 Complex F		2e-06
1jth_B	77	Crystal Structure And Biophysical Properties Of A C		5e-05
1hvv_A	75	Self-Association Of The H3 Region Of Syntaxin 1a: I		6e-05
1sfc_B	83	Neuronal Synaptic Fusion Complex Length = 83		6e-05
1urq_B	75	Crystal Structure Of Neuronal Q-Snares In Complex W		7e-05
1l4a_B	88	X-Ray Structure Of The Neuronal ComplexinSNARE COMP		7e-05
3hd7_B	109	Helical Extension Of The Neuronal Snare Complex Int		8e-05
3c98_B	279	Revised Structure Of The Munc18a-Syntaxin1 Complex		1e-04
1n7s_B	68	High Resolution Structure Of A Truncated Neuronal S		2e-04

>pdb|1GL2|B Chain B, Crystal Structure Of An Endosomal Snare Core Complex Length = 65

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 44/62 (70%)
Query: 17 IEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76
          + ERE  I++++  I ++NEIFKDL +++HEQG +ID I +N+ES+     QA  QL++A
Sbjct: 4  MHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRA 63
Query: 77 SK 78
          + 
Sbjct: 64 AN 65

>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex Length = 71

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 45/62 (72%)
Query: 20 REQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79
          RE  I++++  I +VN+IFKDLA+++H+QG +ID I +N+ESS     +A+ QL +A+  
Sbjct: 4  RETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY 63
Query: 80 QK 81
          QK
Sbjct: 64 QK 65

>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 9   EITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQ 68
           E   NE  I +R + I++++  + E++E+F D++ LV  QG MID I  ++E SH    +
Sbjct: 206 EAKLNE--IRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKK 263
Query: 69  ATTQLAKASKIQ 80
           AT Q+ +A   Q
Sbjct: 264 ATEQVVQARHYQ 275

>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex Between The N-Terminal Region Of Snap25 And The Snare Region Of Syntaxin 1a Length = 77

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 17 IEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76
          IE R   I +++  I E++++F D+A+LV  QG MID I  N+E +     +A +   KA
Sbjct: 5  IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 64
Query: 77 SKIQ 80
           K Q
Sbjct: 65 VKYQ 68

>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a: Implications For Snare Complex Assembly Length = 75

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 17 IEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76
          IE R   I +++  I E++++F D+A+LV  QG MID I  N+E +     +A +   KA
Sbjct: 6  IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 65
Query: 77 SKIQ 80
           K Q
Sbjct: 66 VKYQ 69

>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex Length = 83

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 17 IEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76
          IE R   I +++  I E++++F D+A+LV  QG MID I  N+E +     +A +   KA
Sbjct: 16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 75
Query: 77 SKIQ 80
           K Q
Sbjct: 76 VKYQ 79

>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With R-Snare Motif Of Tomosyn Length = 75

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 17 IEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76
          IE R   I +++  I E++++F D+A+LV  QG MID I  N+E +     +A +   KA
Sbjct: 11 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 70
Query: 77 SKIQ 80
           K Q
Sbjct: 71 VKYQ 74

>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX From The Squid Loligo Pealei Length = 88

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 15 AIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESS--HASTAQATTQ 72
          A IE R   I +++  I E++++F D+A+LV  QG MID I  N+E++  +  TA+  T+
Sbjct: 19 ADIEARHADIMKLETSIRELHDMFMDMAMLVESQGEMIDRIEYNVEAAVDYIETAKVDTK 78
Query: 73 LAKASKIQ 80
            KA K Q
Sbjct: 79 --KAVKYQ 84

>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The Membrane, Spacegroup C 1 2 1 Length = 109

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 17 IEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76
          IE R   I +++  I E++++F D+A+LV  QG MID I  N+E +     +A +   KA
Sbjct: 16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 75
Query: 77 SKIQ 80
           K Q
Sbjct: 76 VKYQ 79

>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 279

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 4   VLLDNEITFNEAI--IEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIES 61
           +++D+ I+  +A+  IE R   I +++  I E++++F D+A+LV  QG MID I  N+E 
Sbjct: 193 IIMDSSIS-KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEH 251
Query: 62  SHASTAQATTQLAKASKIQ 80
           +     +A +   KA K Q
Sbjct: 252 AVDYVERAVSDTKKAVKYQ 270

>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare Complex Length = 68

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 17 IEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76
          IE R   I +++  I E++++F D+A+LV  QG MID I  N+E +     +A +   KA
Sbjct: 7  IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66
Query: 77 SK 78
           K
Sbjct: 67 VK 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	107
2nps_B	71	Syntaxin 13, vesicle-associated membrane protein 4	1e-21
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	6e-21
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	9e-20
1gl2_B	65	Syntaxin 7; membrane protein, membrane fusion prot	3e-19
1sfc_B	83	Protein (syntaxin 1A), protein (synaptobrevin 2);	3e-18
3b5n_B	69	Protein SSO1; snare complex, syntaxin, synaptobrev	5e-18
1n7s_B	68	Syntaxin 1A; neuronal snare protein complex, four	3e-17
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	6e-16
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	8e-16
1fio_A	196	SSO1 protein; four helix bundle, alpha helix, memb	2e-06

>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71

 Score = 80.0 bits (198), Expect = 1e-21
 Identities = 29/65 (44%), Positives = 46/65 (70%)

Query: 19 EREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASK 78
           RE  I++++  I +VN+IFKDLA+++H+QG +ID I +N+ESS     +A+ QL +A+ 
Sbjct: 3  MRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAY 62

Query: 79 IQKSS 83
           QK S
Sbjct: 63 YQKKS 67

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109

 Score = 79.4 bits (196), Expect = 6e-21
 Identities = 27/91 (29%), Positives = 48/91 (52%)

Query: 17  IEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76
           IE R   I +++  I E++++F D+A+LV  QG MID I  N+E +     +A +   KA
Sbjct: 16  IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 75

Query: 77  SKIQKSSSSLSCLLLVIFGIILLIVIILIVA 107
            K Q  +     ++++   I+ +I+   I  
Sbjct: 76  VKYQSKARRKKIMIIICCVILGIIIASTIGG 106

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77

 Score = 75.4 bits (186), Expect = 9e-20
 Identities = 24/73 (32%), Positives = 39/73 (53%)

Query: 17 IEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76
          IE R   I +++  I E++++F D+A+LV  QG MID I  N+E +     +A +   KA
Sbjct: 5  IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 64

Query: 77 SKIQKSSSSLSCL 89
           K Q  +     +
Sbjct: 65 VKYQSKARRKKIM 77

>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65

 Score = 73.8 bits (182), Expect = 3e-19
 Identities = 27/63 (42%), Positives = 45/63 (71%)

Query: 15 AIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLA 74
          + + ERE  I++++  I ++NEIFKDL +++HEQG +ID I +N+ES+     QA  QL+
Sbjct: 2  SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLS 61

Query: 75 KAS 77
          +A+
Sbjct: 62 RAA 64

>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83

 Score = 71.7 bits (176), Expect = 3e-18
 Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 4  VLLDNEITFNE-AIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESS 62
          +++D+ I+    + IE R   I +++  I E++++F D+A+LV  QG MID I  N+E +
Sbjct: 2  IIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHA 61

Query: 63 HASTAQATTQLAKASKIQKSS 83
               +A +   KA K Q  +
Sbjct: 62 VDYVERAVSDTKKAVKYQSKA 82

>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69

 Score = 70.8 bits (174), Expect = 5e-18
 Identities = 17/65 (26%), Positives = 34/65 (52%)

Query: 17 IEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76
          ++ R Q + ++++ ++E+ ++F D+  LV EQ   +D I  N+E +     Q      KA
Sbjct: 5  VQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKA 64

Query: 77 SKIQK 81
           K  +
Sbjct: 65 VKSAR 69

>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68

 Score = 68.9 bits (169), Expect = 3e-17
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 17 IEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76
          IE R   I +++  I E++++F D+A+LV  QG MID I  N+E +     +A +   KA
Sbjct: 7  IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66

Query: 77 SK 78
           K
Sbjct: 67 VK 68

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267

 Score = 69.8 bits (170), Expect = 6e-16
 Identities = 24/77 (31%), Positives = 40/77 (51%)

Query: 13  NEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQ 72
             + IE R   I +++  I E++++F D+A+LV  QG MID I  N+E +     +A + 
Sbjct: 191 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 250

Query: 73  LAKASKIQKSSSSLSCL 89
             KA K Q  +     +
Sbjct: 251 TKKAVKYQSKARRKKIM 267

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279

 Score = 69.4 bits (169), Expect = 8e-16
 Identities = 24/76 (31%), Positives = 43/76 (56%)

Query: 8   NEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTA 67
                    I +R + I++++  + E++E+F D++ LV  QG MID I  ++E SH    
Sbjct: 203 EGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVK 262

Query: 68  QATTQLAKASKIQKSS 83
           +AT Q+ +A   Q+S+
Sbjct: 263 KATEQVVQARHYQESA 278

>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196

 Score = 43.1 bits (101), Expect = 2e-06
 Identities = 9/32 (28%), Positives = 22/32 (68%)

Query: 17  IEEREQGIKEIQEQISEVNEIFKDLAVLVHEQ 48
           ++ R Q + ++++ ++E+ ++F D+  LV EQ
Sbjct: 164 VQARHQELLKLEKSMAELTQLFNDMEELVIEQ 195

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	107
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	99.97
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	99.94
2nps_B	71	Syntaxin 13, vesicle-associated membrane protein 4	99.92
1sfc_B	83	Protein (syntaxin 1A), protein (synaptobrevin 2);	99.89
3b5n_B	69	Protein SSO1; snare complex, syntaxin, synaptobrev	99.89
1gl2_B	65	Syntaxin 7; membrane protein, membrane fusion prot	99.85
1n7s_B	68	Syntaxin 1A; neuronal snare protein complex, four	99.85
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	99.8
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	99.67
3c98_B	279	Syntaxin-1A; protein complex, alternative splicing	99.38
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	99.15
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	99.02
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	98.91
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	98.87
3b5n_D	64	Protein transport protein SEC9; snare complex, syn	98.73
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	98.7
1fio_A	196	SSO1 protein; four helix bundle, alpha helix, memb	98.46
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	98.0
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	97.97
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	97.54
1nhl_A	54	Synaptosomal-associated protein 23; snare, coiled-	97.49
3b5n_C	70	Protein transport protein SEC9; snare complex, syn	97.15
1l4a_C	83	S-SNAP25 fusion protein; snare, snare complex, mem	96.97
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	96.2
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	95.56
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	94.25
2nps_C	81	Vesicle transport through interaction with T- snar	91.34
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	90.07
1n7s_B	68	Syntaxin 1A; neuronal snare protein complex, four	87.1
1gl2_B	65	Syntaxin 7; membrane protein, membrane fusion prot	86.69
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	86.49
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	85.59
2nps_B	71	Syntaxin 13, vesicle-associated membrane protein 4	85.5
3b5n_B	69	Protein SSO1; snare complex, syntaxin, synaptobrev	85.41
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	84.6
3n27_A	80	Fusion glycoprotein F0, linker, fusion glycoprote;	80.46

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=99.97  E-value=5.8e-30  Score=164.23  Aligned_cols=96  Identities=28%  Similarity=0.393  Sum_probs=88.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 038503           10 ITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCL   89 (107)
Q Consensus        10 ~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~   89 (107)
                      .......+++|++++++|++++.+|+++|.||+.+|++||+++|+||+|+++|.+|+++|+.+|++|.+|+|++|||+||
T Consensus         9 a~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i   88 (109)
T 3hd7_B            9 SKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM   88 (109)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccee
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 038503           90 LLVIFGIILLIVIILI  105 (107)
Q Consensus        90 ~~~i~~ii~~i~~~~~  105 (107)
                      +++|++++++++.+++
T Consensus        89 ~l~~~~i~~~i~~~~~  104 (109)
T 3hd7_B           89 IIICCVILGIIIASTI  104 (109)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHh
Confidence            9888887777766655

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B

Probab=99.94  E-value=4.5e-26  Score=137.89  Aligned_cols=75  Identities=32%  Similarity=0.465  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 038503           15 AIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCL   89 (107)
Q Consensus        15 ~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~   89 (107)
                      +.+++|++++.+|+++|.+|++||.||+.+|.+||+++|+||+|++.|..|+++|+.+|.+|.+|++++||++||
T Consensus         3 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~i   77 (77)
T 1jth_B            3 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM   77 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999886

>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=99.92  E-value=2.3e-24  Score=128.52  Aligned_cols=70  Identities=41%  Similarity=0.636  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 038503           18 EEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLS   87 (107)
Q Consensus        18 ~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~   87 (107)
                      ++|++++.+|+++|.+|++||.||+.+|.+||++||+||+|++.|..|+++|+.+|.+|.+|++++|||+
T Consensus         2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~   71 (71)
T 2nps_B            2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM   71 (71)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            4899999999999999999999999999999999999999999999999999999999999999999874

>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B

Probab=99.89  E-value=1.1e-22  Score=124.66  Aligned_cols=75  Identities=32%  Similarity=0.434  Sum_probs=69.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 038503           10 ITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSS   84 (107)
Q Consensus        10 ~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~r   84 (107)
                      .......+++|++++.+|+++|.+|++||.||+.+|.+||++||+||+|++.|..|+++|+.+|.+|.+|++++|
T Consensus         9 ~~~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r   83 (83)
T 1sfc_B            9 SKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR   83 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence            344677899999999999999999999999999999999999999999999999999999999999999999875

>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=99.89  E-value=2.7e-22  Score=118.92  Aligned_cols=67  Identities=27%  Similarity=0.426  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503           15 AIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK   81 (107)
Q Consensus        15 ~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~   81 (107)
                      ..+++|++++.+|+++|.+|++||.||+.+|.+||+++|+||+|++.|..|+++|+.+|.+|.+|+|
T Consensus         3 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr   69 (69)
T 3b5n_B            3 AEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR   69 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999999999999999999999999999999999999999985

>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=99.85  E-value=5.2e-21  Score=112.17  Aligned_cols=64  Identities=42%  Similarity=0.736  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           15 AIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASK   78 (107)
Q Consensus        15 ~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~   78 (107)
                      .++++|++++.+|+++|.+|++||.||+.+|++||+++|+||+|++.|..|+++|+.+|.+|.+
T Consensus         2 ~~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k   65 (65)
T 1gl2_B            2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN   65 (65)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4688999999999999999999999999999999999999999999999999999999999864

>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B

Probab=99.85  E-value=1.1e-20  Score=111.63  Aligned_cols=64  Identities=34%  Similarity=0.500  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           14 EAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKAS   77 (107)
Q Consensus        14 ~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~   77 (107)
                      ...+++|++++.+|+++|.+|++||.+|+.+|.+||+++|+||+|++.|..|+++|+.+|.+|.
T Consensus         4 l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~   67 (68)
T 1n7s_B            4 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4589999999999999999999999999999999999999999999999999999999999985

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B

Probab=99.80  E-value=2.3e-21  Score=140.62  Aligned_cols=80  Identities=30%  Similarity=0.405  Sum_probs=58.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 038503           10 ITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCL   89 (107)
Q Consensus        10 ~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~   89 (107)
                      .......+++|++++.+|+++|.+|++||.||+.+|++||++||+||+|++.|..|++.|+.+|.+|.+|++++|||+||
T Consensus       188 ~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~~  267 (267)
T 1dn1_B          188 SKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM  267 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            44567899999999999999999999999999999999999999999999999999999999999999999999999886

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}

Probab=99.67  E-value=1.2e-18  Score=126.77  Aligned_cols=72  Identities=33%  Similarity=0.526  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 038503           13 NEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSS   84 (107)
Q Consensus        13 ~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~r   84 (107)
                      ....+++|+++|.+|+++|.+|++||.+|+.||++||++||+||+||+.|..|+++|+.+|.+|.+|+|++|
T Consensus       208 ~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~~R  279 (279)
T 2xhe_B          208 KLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR  279 (279)
T ss_dssp             --CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence            345799999999999999999999999999999999999999999999999999999999999999999876

>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}

Probab=99.38  E-value=2.3e-14  Score=101.97  Aligned_cols=80  Identities=30%  Similarity=0.405  Sum_probs=57.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 038503           10 ITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCL   89 (107)
Q Consensus        10 ~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~   89 (107)
                      .......++++.+.+.+|+.++.+++++|.+++.++.+|++++|+|+.|++.+..++..|+.++.+|.+|++++|||+||
T Consensus       200 ~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkkk~i  279 (279)
T 3c98_B          200 SKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM  279 (279)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcC
Confidence            44456789999999999999999999999999999999999999999999999999999999999999999999999885

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}

Probab=99.15  E-value=2e-10  Score=69.62  Aligned_cols=74  Identities=19%  Similarity=0.311  Sum_probs=59.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 038503           10 ITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSS   83 (107)
Q Consensus        10 ~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~   83 (107)
                      ++.+..++++.++.++.|..++..++++..+|+.++..|++++|++++.++.+...+..+++.+.+..+..+.+
T Consensus         7 ~q~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~   80 (82)
T 2nps_D            7 MTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDR   80 (82)
T ss_dssp             -----------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence            34567889999999999999999999999999999999999999999999999999999999999988875544

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.02  E-value=1.4e-09  Score=63.04  Aligned_cols=62  Identities=16%  Similarity=0.346  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           15 AIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA   76 (107)
Q Consensus        15 ~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A   76 (107)
                      +++++.++.++.|+.++..++++..+|+.++..|+.++|++++.++.+...+..+++.+.+.
T Consensus         2 ~~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l   63 (65)
T 1gl2_D            2 SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV   63 (65)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47889999999999999999999999999999999999999999999999999999887654

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B

Probab=98.91  E-value=2.4e-08  Score=57.96  Aligned_cols=60  Identities=17%  Similarity=0.263  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           16 IIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAK   75 (107)
Q Consensus        16 ~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~   75 (107)
                      +-++.++.++.|..++..++++..+|+.++..|+.++|++++.++.+...+..+++.+.+
T Consensus         4 ~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~   63 (66)
T 1n7s_D            4 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK   63 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            346778899999999999999999999999999999999999999999999999988865

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=98.87  E-value=4.2e-08  Score=59.95  Aligned_cols=63  Identities=17%  Similarity=0.274  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           14 EAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA   76 (107)
Q Consensus        14 ~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A   76 (107)
                      ....++.++.++.|...+..++++..+|+.++..|+++||++++.++.+...+..+++.+.+.
T Consensus        21 d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~l   83 (87)
T 1sfc_D           21 DARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM   83 (87)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            456778999999999999999999999999999999999999999999999999999888764

>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}

Probab=98.73  E-value=1.7e-07  Score=54.16  Aligned_cols=58  Identities=14%  Similarity=0.184  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           18 EEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAK   75 (107)
Q Consensus        18 ~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~   75 (107)
                      .+.++.+..++..+..++.|...++.++..|.++||+|++.++.+..++..+++.|.+
T Consensus         6 ~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~   63 (64)
T 3b5n_D            6 LEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG   63 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5677889999999999999999999999999999999999999999999999988864

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=98.70  E-value=1e-07  Score=58.21  Aligned_cols=62  Identities=21%  Similarity=0.300  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           15 AIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA   76 (107)
Q Consensus        15 ~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A   76 (107)
                      ..-.+.++.++.|...+..|++|..+|+.++..|+++||+|++.++.+..++..+++.+.+.
T Consensus        23 ~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kl   84 (87)
T 1l4a_D           23 AREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKL   84 (87)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHC
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567789999999999999999999999999999999999999999999999999888653

>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1

Probab=98.46  E-value=6e-08  Score=66.49  Aligned_cols=39  Identities=26%  Similarity=0.446  Sum_probs=36.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503           11 TFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQG   49 (107)
Q Consensus        11 ~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qg   49 (107)
                      ......+++|+++|.+|+++|.+|++||.||+.+|++||
T Consensus       158 ~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG  196 (196)
T 1fio_A          158 KTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ  196 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            345678999999999999999999999999999999997

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=98.00  E-value=0.00045  Score=42.19  Aligned_cols=43  Identities=19%  Similarity=0.298  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 038503           22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHA   64 (107)
Q Consensus        22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~   64 (107)
                      +.+.++...+.++++++.+=-.-+-+.||-+|.+++..++-..
T Consensus         5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~   47 (91)
T 3hd7_A            5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA   47 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence            5688999999999999998888888999999998877665444

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=97.97  E-value=0.00089  Score=42.10  Aligned_cols=90  Identities=14%  Similarity=0.185  Sum_probs=64.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 038503            9 EITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSC   88 (107)
Q Consensus         9 ~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~   88 (107)
                      +++...+.+++=.+.+.+|..-..++..+..+=+.+++.=...+++..+|++.+...+.+|.+.=++++    +...+++
T Consensus        15 ~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~r----kk~~i~l   90 (109)
T 3hd7_B           15 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR----RKKIMII   90 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CcceehH
Confidence            344456677778888888888889999999888889988888999999999999999999875533333    3334444


Q ss_pred             HH-HHHHHHHHHHHH
Q 038503           89 LL-LVIFGIILLIVI  102 (107)
Q Consensus        89 ~~-~~i~~ii~~i~~  102 (107)
                      ++ +++++|+.+++.
T Consensus        91 ~~~~i~~~i~~~~~~  105 (109)
T 3hd7_B           91 ICCVILGIIIASTIG  105 (109)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhc
Confidence            44 344444444443

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=97.54  E-value=0.0039  Score=37.04  Aligned_cols=55  Identities=15%  Similarity=0.254  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           21 EQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAK   75 (107)
Q Consensus        21 ~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~   75 (107)
                      -+.+++--+.+.+-.++.......++.||+.|++++.+++.+..++..|.+.|..
T Consensus        22 ~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~   76 (79)
T 1n7s_C           22 LESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD   76 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence            3446677777778888999999999999999999999999999999999988764

>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1

Probab=97.49  E-value=0.0015  Score=36.03  Aligned_cols=48  Identities=13%  Similarity=0.151  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           27 IQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLA   74 (107)
Q Consensus        27 le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~   74 (107)
                      ..+-+.+..++......+++.||+.+++++.+++....++..|.+.|.
T Consensus         5 ~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~   52 (54)
T 1nhl_A            5 ILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT   52 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence            344566677778888889999999999999999999999999988774

>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=97.15  E-value=0.011  Score=34.41  Aligned_cols=54  Identities=9%  Similarity=0.159  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           26 EIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI   79 (107)
Q Consensus        26 ~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~   79 (107)
                      +.-+-..+-.+....-..++..||+.|+++|.+++.+..+...|.+.+..-..+
T Consensus        16 r~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~   69 (70)
T 3b5n_C           16 NTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKL   69 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            333444455556666667889999999999999999999999999988766554

>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=96.97  E-value=0.0069  Score=36.34  Aligned_cols=50  Identities=20%  Similarity=0.277  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           24 IKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQL   73 (107)
Q Consensus        24 i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL   73 (107)
                      .++.-+-+.+..+....-..+++.||+.|++|+.+++....++..|-+.|
T Consensus        29 Trr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L   78 (83)
T 1l4a_C           29 TRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL   78 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555566666777778888999999999999999999999988876554

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=96.20  E-value=0.00061  Score=43.62  Aligned_cols=40  Identities=18%  Similarity=0.308  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 038503           22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIES   61 (107)
Q Consensus        22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~   61 (107)
                      +.+.++...+.++++++.+=-.-|-+.||-+|.+++..++
T Consensus        33 d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~   72 (119)
T 2kog_A           33 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA   72 (119)
T ss_dssp             SHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            4577888889999888888888888889988888766554

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=95.56  E-value=0.14  Score=28.95  Aligned_cols=54  Identities=15%  Similarity=0.199  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAK   75 (107)
Q Consensus        22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~   75 (107)
                      +.+++-.+.+.+--++...+...++.|.|.|.+....+..+..++.++.+-|..
T Consensus         9 ~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~   62 (65)
T 1gl2_C            9 QSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRS   62 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHh
Confidence            456677778888899999999999999999999999999999999999877653

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=94.25  E-value=0.48  Score=28.47  Aligned_cols=27  Identities=22%  Similarity=0.212  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503           55 ISSNIESSHASTAQATTQLAKASKIQK   81 (107)
Q Consensus        55 Ie~nv~~a~~~v~~~~~eL~~A~~~~~   81 (107)
                      +|.-++.|.+=...+..--+.|.+.++
T Consensus        35 L~~L~~kt~~L~~~s~~F~~~A~~l~r   61 (91)
T 3hd7_A           35 LSELDDRADALQAGASQFETSAAKLKR   61 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444443333333333333333333

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=91.34  E-value=1.3  Score=25.92  Aligned_cols=65  Identities=9%  Similarity=0.104  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           15 AIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI   79 (107)
Q Consensus        15 ~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~   79 (107)
                      +-+..=...++.-...+.+-.++...+-..+..|.|.|.+....+..+..++.++.+-|..-.+.
T Consensus        12 ~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr   76 (81)
T 2nps_C           12 ERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRR   76 (81)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence            34444455688888889999999999999999999999999999999999999999888776654

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=90.07  E-value=3.6  Score=28.79  Aligned_cols=74  Identities=16%  Similarity=0.246  Sum_probs=57.6

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503            2 EVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAK   75 (107)
Q Consensus         2 ~~~~~~~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~   75 (107)
                      +|+.+|.+++.-.....+-..++..++..+..++.-+..+...+.+-...+.+.+..++.+...+.+...++..
T Consensus        12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~   85 (256)
T 3na7_A           12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE   85 (256)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            35666666655555556666778888888888888888888888888888888888888888888888877754

>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B

Probab=87.10  E-value=2.7  Score=23.57  Aligned_cols=61  Identities=11%  Similarity=0.222  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 038503           23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSS   83 (107)
Q Consensus        23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~   83 (107)
                      .+..=++.+..+..-..+++.+..+=+.++..=...+++...|+..+.....+|.+.-+++
T Consensus         6 ~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA   66 (68)
T 1n7s_B            6 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666666666666666666666666666666666666666666666666554443

>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=86.69  E-value=2.7  Score=23.34  Aligned_cols=54  Identities=19%  Similarity=0.319  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503           28 QEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK   81 (107)
Q Consensus        28 e~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~   81 (107)
                      ++.+..+..-..+++.+..+=+.++..=...+++...|+..+.....+|.+.-+
T Consensus         8 ~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~   61 (65)
T 1gl2_B            8 ESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLS   61 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555555555555555555555555554433

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B

Probab=86.49  E-value=3.1  Score=23.81  Aligned_cols=64  Identities=14%  Similarity=0.229  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           14 EAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKAS   77 (107)
Q Consensus        14 ~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~   77 (107)
                      .+.+++=.+.+.+|..-..++..|..+=+.+++.=...++....|++.+...+.+|.+.-+++.
T Consensus         9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~r   72 (77)
T 1jth_B            9 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR   72 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4445555666667777777777777777777776667777777777777777777765444433

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=85.59  E-value=1.3  Score=27.93  Aligned_cols=6  Identities=33%  Similarity=0.761  Sum_probs=2.2

Q ss_pred             HHHHhh
Q 038503           76 ASKIQK   81 (107)
Q Consensus        76 A~~~~~   81 (107)
                      |.+.++
T Consensus        84 A~kl~r   89 (119)
T 2kog_A           84 AAKLKR   89 (119)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=85.50  E-value=3.4  Score=23.30  Aligned_cols=62  Identities=13%  Similarity=0.226  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           15 AIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA   76 (107)
Q Consensus        15 ~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A   76 (107)
                      ..+++=.+.+.+|..-..++..|..+=+.+++.=...++....|++.+...+.+|.+.-+++
T Consensus         6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~   67 (71)
T 2nps_B            6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKS   67 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34555566777777778888888888888888778888888888888888888887654443

>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=85.41  E-value=3.4  Score=23.20  Aligned_cols=60  Identities=7%  Similarity=0.209  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 038503           24 IKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSS   83 (107)
Q Consensus        24 i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~   83 (107)
                      +..=++.+..+..-..+++.+..+=+.++..=..-+++...|+..+.....+|.+.-+++
T Consensus         5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA   64 (69)
T 3b5n_B            5 VQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKA   64 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555666666666666666666666666666666666666666666666554443

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=84.60  E-value=4.2  Score=23.64  Aligned_cols=48  Identities=8%  Similarity=0.094  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038503           22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQA   69 (107)
Q Consensus        22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~   69 (107)
                      ..+..||..+.-.-+...+|+..|..|...||++...+..-...+...
T Consensus        14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~   61 (78)
T 3efg_A           14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV   61 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            467889999999999999999999999999999998888777766543

>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}

Probab=80.46  E-value=6.7  Score=22.99  Aligned_cols=26  Identities=12%  Similarity=0.286  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503           54 DISSNIESSHASTAQATTQLAKASKI   79 (107)
Q Consensus        54 ~Ie~nv~~a~~~v~~~~~eL~~A~~~   79 (107)
                      +|.-+...|...++.....+.++++.
T Consensus        50 dis~~l~~a~~~l~~sk~~~~~~~~~   75 (80)
T 3n27_A           50 DISIELNKAKSDLEESKEWIRRSNQK   75 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhHhHHHhhHHHHHHHHHHHHHH
Confidence            46667888888888888888887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	107
d1fioa_	196	a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c	4e-06

>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (96), Expect = 4e-06
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 8   NEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQ 48
            E     A ++ R Q + ++++ ++E+ ++F D+  LV EQ
Sbjct: 155 GEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQ 195

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	107
d1fioa_	196	Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.24

>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.24  E-value=1.9e-07  Score=61.37  Aligned_cols=41  Identities=27%  Similarity=0.447  Sum_probs=37.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503            9 EITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQG   49 (107)
Q Consensus         9 ~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qg   49 (107)
                      +.......+++|+++|.+|+++|.+|++||.+|+.||++|.
T Consensus       156 ~~~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ~  196 (196)
T d1fioa_         156 EAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ  196 (196)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC
Confidence            45567788999999999999999999999999999999884