Citrus Sinensis ID: 038525

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MACAFSNTCRAVIVFTWAALTLLIVHVAASENRKTSFTQQRLVEGQDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHSTIWK
Secondary Structure (PSIPRED)
ccEEcccccccHHHHHHHHHccEEEEccccccccccccEEcccccccccccHHHHHccccEEEcccccEEEEcccccccccccccEEEccccccEEcccccHHccccccEEEccccccccccccccccEEEcccccccccccccccccccccEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccHHcccHHHHHHHHHHHHEEEEEEEcccHcccccccEEEEEEccccHHHHHHccccEEEEEccccccccccccccccccccccEEEcccccccccccHHHccHHHccEEEcccccHHHHHcHccccEEEccccccccccccEEEccEEEcHHHHHHccccccc
Coil and Loop (DISEMBL)
macafsntCRAVIVFTWAALTLLIVHVAasenrktsftqqrlvegqdssqcfrslqlgwYHIELVECSikgelgslnfscfsnLQYINlwnndlsgsippqiGSLLKLKYLNLRWKNLTEIGKILLLQNldlshnnlsdsqfrfvipYLRLSVQCVWTCHSTIWK
Flexible Loop (DISEMBL)
MACAFSNTCRAVIVFTWAALTLLIVHVAASENRKtsftqqrlvegqdsSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHSTIWK
Low Complexity Region (SEG)
MACAFSNTCRAVIVFTWAALTLLIVHVAASENRKTSFTQQRLVEGQDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHSTIWK
Disordered region (IsUnstruct)
**CAFSNTCRAVIVFTWAALTLLIVHVAASE*****************SQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHSTIW*
Disordered Region (DISOPRED)
MACAFSNTCRAVIVFTWAALTLLIVHVAASENRKTSFTQQRLVEGQDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHSTIW*
Disordered Region (DISEMBL)
MACAFSNTCRAVIVFTWAALTLLIVHVAASENRKTSFTQQRLVEGQDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHSTIWK
Disordered Region (DISPRO)
*ACAFSNTCRAVIVFTWAALTLLIVHVAASENRKTSFTQQRLVEGQDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHSTIW*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MACAFSNTCRAVIVFTWAALTLLIVHVAASENRKTSFTQQRLVEGQDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHSTIWK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	165	2.2.26 [Sep-21-2011]
Q94F62	615	BRASSINOSTEROID INSENSITI	no	no	0.569	0.152	0.297	6e-06
Q8LPS5	601	Somatic embryogenesis rec	no	no	0.484	0.133	0.347	9e-06
Q94AG2	625	Somatic embryogenesis rec	no	no	0.478	0.126	0.388	9e-06
Q9XIC7	628	Somatic embryogenesis rec	no	no	0.478	0.125	0.364	1e-05
C0LGX3	993	LRR receptor-like serine/	no	no	0.509	0.084	0.409	2e-05
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.406	0.053	0.397	2e-05
O65440	992	Leucine-rich repeat recep	no	no	0.533	0.088	0.350	3e-05
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.333	0.043	0.454	3e-05
C0LGJ1	1106	Probable LRR receptor-lik	no	no	0.533	0.079	0.354	4e-05
Q9LP24	1120	Probable leucine-rich rep	no	no	0.333	0.049	0.423	4e-05

>sp|Q94F62|BAK1_ARATH BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2

 Score = 50.1 bits (118), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 17/111 (15%)

Query: 59  WYHI-----------ELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLK 107
           W+H+           +L   ++ G+L  +      NLQY+ L++N+++G+IP Q+G+L +
Sbjct: 59  WFHVTCNSDNSVTRVDLGNANLSGQL-VMQLGQLPNLQYLELYSNNITGTIPEQLGNLTE 117

Query: 108 LKYLNLRWKNL-----TEIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSV 153
           L  L+L   NL     + +G++  L+ L L++N+LS    R +   L L V
Sbjct: 118 LVSLDLYLNNLSGPIPSTLGRLKKLRFLRLNNNSLSGEIPRSLTAVLTLQV 168

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Controls the expression of genes associated with innate immunity in the absence of pathogens or elicitors. Involved in brassinosteroid (BR) signal transduction. Phosphorylates BRI1. May be involved in changing the equilibrium between plasma membrane-located BRI1 homodimers and endocytosed BRI1-BAK1 heterodimers. Interaction with MSBP1 stimulates the endocytosis of BAK1 and suppresses brassinosteroid signaling. Acts in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) via its interaction with FLS2 and the phosphorylation of BIK1. Involved in programmed cell death (PCD) control. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8LPS5|SERK5_ARATH Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2

 Score = 49.7 bits (117), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 15/95 (15%)

Query: 59  WYHIEL-VECSI-KGELGSLNFSC--------FSNLQYINLWNNDLSGSIPPQIGSLLKL 108
           W+H+    E S+ + +LGS N S           NLQY+ L+NN+++G IP ++G L++L
Sbjct: 61  WFHVTCNTENSVTRLDLGSANLSGELVPQLAQLPNLQYLELFNNNITGEIPEELGDLMEL 120

Query: 109 KYLNLRWKNL-----TEIGKILLLQNLDLSHNNLS 138
             L+L   N+     + +GK+  L+ L L +N+LS
Sbjct: 121 VSLDLFANNISGPIPSSLGKLGKLRFLRLYNNSLS 155

Serine/threonine-kinase of unknown function.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q94AG2|SERK1_ARATH Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2

 Score = 49.7 bits (117), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 6/85 (7%)

Query: 61  HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT- 119
           ++EL   +I G + S N    +NL  ++L+ N  SG IP  +G L KL++L L   +LT 
Sbjct: 97  YLELYSNNITGPIPS-NLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLTG 155

Query: 120 ----EIGKILLLQNLDLSHNNLSDS 140
                +  I  LQ LDLS+N LS S
Sbjct: 156 SIPMSLTNITTLQVLDLSNNRLSGS 180

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Phosphorylates BRI1 on 'Ser-887' and CDC48 on at least one threonine residue and on 'Ser-41'. Confers embryogenic competence. Acts redundantly with SERK2 as a control point for sporophytic development controlling male gametophyte production. Involved in the brassinolide signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9XIC7|SERK2_ARATH Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 6/85 (7%)

Query: 61  HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT- 119
           ++EL   +I G + S +    +NL  ++L+ N  +G IP  +G L KL++L L   +LT 
Sbjct: 100 YLELYSNNITGPVPS-DLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKLRFLRLNNNSLTG 158

Query: 120 ----EIGKILLLQNLDLSHNNLSDS 140
                +  I+ LQ LDLS+N LS S
Sbjct: 159 PIPMSLTNIMTLQVLDLSNNRLSGS 183

Serine/threonine-kinase involved in brassinosteroid-dependent and -independent signaling pathways. Acts redundantly with SERK1 as a control point for sporophytic development controlling male gametophyte production.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGX3|HSL2_ARATH LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 61  HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT- 119
            +E+ E  + GE+ S   SC + L  +NL NN L G IPP++G L  L YL+L    LT 
Sbjct: 511 RVEMQENMLDGEIPSSVSSC-TELTELNLSNNRLRGGIPPELGDLPVLNYLDLSNNQLTG 569

Query: 120 EIGKILLLQNLDLSHNNLSDSQFRFVIP 147
           EI   LL   L L+  N+SD++    IP
Sbjct: 570 EIPAELL--RLKLNQFNVSDNKLYGKIP 595

Receptor-like serine/threonine-kinase acting on substrates that controls floral organ abscission. Regulated by the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) family of ligands.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 16/83 (19%)

Query: 64  LVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRW-------- 115
           ++  +I  ELG L      NL+ +NL NN L+G IP Q+G + +L+YL+L          
Sbjct: 226 MLNGTIPAELGRL-----ENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIP 280

Query: 116 KNLTEIGKILLLQNLDLSHNNLS 138
           K+L ++G    LQ LDLS NNL+
Sbjct: 281 KSLADLGN---LQTLDLSANNLT 300

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 53/114 (46%), Gaps = 26/114 (22%)

Query: 52  FRSLQLGWYHIELVECSIKGELGSL-----------NFS---------CFSNLQYINLWN 91
            RSLQ+       +   I GE+GSL           NFS         C S L Y++L +
Sbjct: 489 LRSLQILLLGANRLSGQIPGEIGSLKSLLKIDMSRNNFSGKFPPEFGDCMS-LTYLDLSH 547

Query: 92  NDLSGSIPPQIGSLLKLKYLNLRWKNL-----TEIGKILLLQNLDLSHNNLSDS 140
           N +SG IP QI  +  L YLN+ W +       E+G +  L + D SHNN S S
Sbjct: 548 NQISGQIPVQISQIRILNYLNVSWNSFNQSLPNELGYMKSLTSADFSHNNFSGS 601

Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 11/66 (16%)

Query: 81  FSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRW--------KNLTEIGKILLLQNLDL 132
             NLQ +NL +N  SG IP Q+G L+ ++YLNL          K LTE+     LQ LDL
Sbjct: 239 LKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELAN---LQTLDL 295

Query: 133 SHNNLS 138
           S NNL+
Sbjct: 296 SSNNLT 301

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGJ1|Y1743_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 8/96 (8%)

Query: 48  SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLK 107
           +    R+L++  Y ++L      GE+ + + S    L  ++L  N+  G +PP+IG L  
Sbjct: 562 AGSTVRTLKISAY-LQLSGNKFSGEIPA-SISQMDRLSTLHLGFNEFEGKLPPEIGQL-P 618

Query: 108 LKYLNLRWKNLT-----EIGKILLLQNLDLSHNNLS 138
           L +LNL   N +     EIG +  LQNLDLS NN S
Sbjct: 619 LAFLNLTRNNFSGEIPQEIGNLKCLQNLDLSFNNFS 654

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%)

Query: 61  HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT 119
            + L    I+G      F   SNL Y++L  N LSG+IPPQ G+L KL Y +L   +LT
Sbjct: 81  ELNLTNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLT 139

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
224065673	964	predicted protein [Populus trichocarpa]	0.436	0.074	0.480	2e-09
224110038	964	predicted protein [Populus trichocarpa]	0.436	0.074	0.480	2e-09
224065665	847	predicted protein [Populus trichocarpa]	0.436	0.085	0.467	1e-08
224136674	945	predicted protein [Populus trichocarpa]	0.472	0.082	0.5	2e-08
224110024	827	predicted protein [Populus trichocarpa]	0.436	0.087	0.454	4e-08
413941856	1070	putative leucine-rich repeat receptor pr	0.466	0.071	0.463	4e-08
356566991	1023	PREDICTED: probable LRR receptor-like se	0.460	0.074	0.444	6e-08
225456161	1037	PREDICTED: probable LRR receptor-like se	0.496	0.079	0.434	6e-08
218184060	1210	hypothetical protein OsI_32581 [Oryza sa	0.533	0.072	0.416	7e-08
225456159	1038	PREDICTED: probable LRR receptor-like se	0.496	0.078	0.423	1e-07

>gi|224065673|ref|XP_002301914.1| predicted protein [Populus trichocarpa] gi|222843640|gb|EEE81187.1| predicted protein [Populus trichocarpa]

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 5/77 (6%)

Query: 69  IKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNL-----TEIGK 123
           +  + G +NFSCFSNL  ++L N++LSGSIPPQI  L +L+YLNL   NL     + +G 
Sbjct: 89  VGNKFGKMNFSCFSNLVRLHLANHELSGSIPPQISILPQLRYLNLSSNNLAGELPSSLGN 148

Query: 124 ILLLQNLDLSHNNLSDS 140
           +  L  LD S NNL++S
Sbjct: 149 LSRLVELDFSSNNLTNS 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110038|ref|XP_002333164.1| predicted protein [Populus trichocarpa] gi|222835017|gb|EEE73466.1| predicted protein [Populus trichocarpa]

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 5/77 (6%)

Query: 69  IKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNL-----TEIGK 123
           +  + G +NFSCFSNL  ++L N++LSGSIPPQI  L +L+YLNL   NL     + +G 
Sbjct: 89  VGNKFGKMNFSCFSNLVRLHLANHELSGSIPPQISILPQLRYLNLSSNNLAGELPSSLGN 148

Query: 124 ILLLQNLDLSHNNLSDS 140
           +  L  LD S NNL++S
Sbjct: 149 LSRLVELDFSSNNLTNS 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065665|ref|XP_002301910.1| predicted protein [Populus trichocarpa] gi|222843636|gb|EEE81183.1| predicted protein [Populus trichocarpa]

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 5/77 (6%)

Query: 69  IKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNL-----TEIGK 123
           +  + G +NFSCFSNL  ++L N++LSGSIPPQI  L +L+YLNL   NL     + +G 
Sbjct: 89  VGNKFGKMNFSCFSNLARLHLANHELSGSIPPQISILPQLRYLNLSSNNLAGELPSSLGN 148

Query: 124 ILLLQNLDLSHNNLSDS 140
           +  L  LD S NN  +S
Sbjct: 149 LSRLVELDFSSNNFINS 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136674|ref|XP_002322387.1| predicted protein [Populus trichocarpa] gi|222869383|gb|EEF06514.1| predicted protein [Populus trichocarpa]

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 52/80 (65%), Gaps = 2/80 (2%)

Query: 61  HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKY-LNLRWKNL- 118
           +I L   S++G L SL F  F NL Y+ L NN L GSIPP IG+L++L   LN    N+ 
Sbjct: 85  NISLPNSSLRGTLNSLRFPSFPNLIYLILHNNSLYGSIPPHIGNLIRLDLSLNSISGNIP 144

Query: 119 TEIGKILLLQNLDLSHNNLS 138
            E+GK++ L  LDLS+NNLS
Sbjct: 145 PEVGKLVSLYLLDLSNNNLS 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110024|ref|XP_002333161.1| predicted protein [Populus trichocarpa] gi|222835014|gb|EEE73463.1| predicted protein [Populus trichocarpa]

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 5/77 (6%)

Query: 69  IKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNL-----TEIGK 123
           +  + G +NFSCFSNL  ++L N++L+GSIPPQI  L +L+YLNL   NL     + +G 
Sbjct: 90  VGNKFGKMNFSCFSNLVRLHLPNHELNGSIPPQISILPQLRYLNLSSNNLAGELPSSLGN 149

Query: 124 ILLLQNLDLSHNNLSDS 140
           +  L  LD S NN  +S
Sbjct: 150 LSRLVELDFSSNNFINS 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413941856|gb|AFW74505.1| putative leucine-rich repeat receptor protein kinase family protein [Zea mays]

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 47/82 (57%), Gaps = 5/82 (6%)

Query: 62  IELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNL--- 118
           + L   SI G LG LNFS F  LQ+++L  N L G IPP I SL  L YL+L    L   
Sbjct: 110 VSLPNASIDGHLGELNFSAFPFLQHLDLAYNSLHGGIPPAIASLRALSYLDLTGNWLHGH 169

Query: 119 --TEIGKILLLQNLDLSHNNLS 138
              E+G +  L +LDLS NNL+
Sbjct: 170 VPPEVGGMRRLVHLDLSFNNLT 191

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566991|ref|XP_003551708.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Glycine max]

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 5/81 (6%)

Query: 62  IELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-- 119
           I L    + G L +LNFS F NL  +N++NN   G+IPPQIG+L  L YL+L   N +  
Sbjct: 77  INLPNYGLSGTLHTLNFSSFPNLLSLNIYNNSFYGTIPPQIGNLSNLSYLDLSICNFSGH 136

Query: 120 ---EIGKILLLQNLDLSHNNL 137
              EIGK+ +L+ L ++ NNL
Sbjct: 137 IPPEIGKLNMLEILRIAENNL 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456161|ref|XP_002278590.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 10/92 (10%)

Query: 62  IELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-- 119
           I L E  + G L + +FS F NL Y+++  N+LSG IPPQIG L KLKYL+L     +  
Sbjct: 93  INLTESGLGGTLQAFSFSSFPNLAYVDISMNNLSGPIPPQIGLLSKLKYLDLSINQFSGG 152

Query: 120 ---EIGKILLLQNLDLSHNNLSDSQFRFVIPY 148
              EIG   LL NL++ H  L  +Q    IP+
Sbjct: 153 IPPEIG---LLTNLEVLH--LVQNQLNGSIPH 179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218184060|gb|EEC66487.1| hypothetical protein OsI_32581 [Oryza sativa Indica Group]

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 54/96 (56%), Gaps = 8/96 (8%)

Query: 51  CFRSLQLGW---YHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLK 107
           C R  ++ W    +I L    I G+LG L+FS    L YI+L +N L+G IP  I SLL 
Sbjct: 35  CGRRHRMPWPVVTNISLPAAGIHGQLGELDFSSIPYLAYIDLSDNSLNGPIPSNISSLLA 94

Query: 108 LKYLNLRWKNLT-----EIGKILLLQNLDLSHNNLS 138
           L++L L+   LT     EIG++  L  L LS NNL+
Sbjct: 95  LQHLELQLNQLTGRIPDEIGELRSLTTLSLSFNNLT 130

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456159|ref|XP_002278561.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 10/92 (10%)

Query: 62  IELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNL--- 118
           I L E  + G L   +FS F NL Y+++  N+LSG IPPQIG L +LKYL+L        
Sbjct: 93  INLTESGLNGTLMDFSFSSFPNLAYVDISMNNLSGPIPPQIGLLFELKYLDLSINQFSGG 152

Query: 119 --TEIGKILLLQNLDLSHNNLSDSQFRFVIPY 148
             +EIG   LL NL++ H  L  +Q    IP+
Sbjct: 153 IPSEIG---LLTNLEVLH--LVQNQLNGSIPH 179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
TAIR|locus:2094613	784	RLP38 "receptor like protein 3	0.545	0.114	0.326	1.3e-06
TAIR|locus:2169975	993	HSL2 "HAESA-like 2" [Arabidops	0.563	0.093	0.387	1.7e-06
TAIR|locus:2019255	1106	AT1G74360 [Arabidopsis thalian	0.503	0.075	0.373	2.5e-06
TAIR|locus:2139885	1013	AT4G28650 [Arabidopsis thalian	0.454	0.074	0.385	2.8e-06
TAIR|locus:2013021	625	SERK1 "somatic embryogenesis r	0.478	0.126	0.388	7.5e-06
TAIR|locus:2181042	967	AT5G01890 [Arabidopsis thalian	0.569	0.097	0.352	1.3e-05
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.509	0.075	0.397	1.6e-05
UNIPROTKB|Q15404	277	RSU1 "Ras suppressor protein 1	0.381	0.227	0.397	1.6e-05
TAIR|locus:2124147	431	RLP51 "receptor like protein 5	0.503	0.192	0.370	2.2e-05
TAIR|locus:2136313	864	AT4G39270 [Arabidopsis thalian	0.472	0.090	0.369	2.4e-05

TAIR|locus:2094613 RLP38 "receptor like protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 32/98 (32%), Positives = 54/98 (55%)

Query:    46 QDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSL 105
             + SS  F+   L   H++L  C+++GE+ S +    S+L +++L  N L G +P  IG+L
Sbjct:   101 KSSSALFKLQHLT--HLDLSNCNLQGEIPS-SIENLSHLTHLDLSTNHLVGEVPASIGNL 157

Query:   106 LKLKYLNLRWKNL-----TEIGKILLLQNLDLSHNNLS 138
              +L+Y++LR  +L     T    +  L  LDL  NN +
Sbjct:   158 NQLEYIDLRGNHLRGNIPTSFANLTKLSLLDLHENNFT 195

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2169975 HSL2 "HAESA-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 38/98 (38%), Positives = 52/98 (53%)

Query:    51 CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKY 110
             C   L+     +E+ E  + GE+ S   SC + L  +NL NN L G IPP++G L  L Y
Sbjct:   502 CINKLK-NLERVEMQENMLDGEIPSSVSSC-TELTELNLSNNRLRGGIPPELGDLPVLNY 559

Query:   111 LNLRWKNLT-EIGKILLLQNLDLSHNNLSDSQFRFVIP 147
             L+L    LT EI   LL   L L+  N+SD++    IP
Sbjct:   560 LDLSNNQLTGEIPAELL--RLKLNQFNVSDNKLYGKIP 595

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2019255 AT1G74360 [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 34/91 (37%), Positives = 50/91 (54%)

Query:    53 RSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLN 112
             R+L++  Y ++L      GE+ + + S    L  ++L  N+  G +PP+IG L  L +LN
Sbjct:   567 RTLKISAY-LQLSGNKFSGEIPA-SISQMDRLSTLHLGFNEFEGKLPPEIGQL-PLAFLN 623

Query:   113 LRWKNLT-----EIGKILLLQNLDLSHNNLS 138
             L   N +     EIG +  LQNLDLS NN S
Sbjct:   624 LTRNNFSGEIPQEIGNLKCLQNLDLSFNNFS 654

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2139885 AT4G28650 [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 32/83 (38%), Positives = 48/83 (57%)

Query:    62 IELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNL--- 118
             ++  + ++ GE+  +  +   NLQ +NL  N LSGSIPP I SL +L+ L L W N    
Sbjct:   289 LDFSDNALTGEI-PMEITKLKNLQLLNLMRNKLSGSIPPAISSLAQLQVLEL-WNNTLSG 346

Query:   119 ---TEIGKILLLQNLDLSHNNLS 138
                +++GK   LQ LD+S N+ S
Sbjct:   347 ELPSDLGKNSPLQWLDVSSNSFS 369

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2013021 SERK1 "somatic embryogenesis receptor-like kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 7.5e-06, P = 7.5e-06
 Identities = 33/85 (38%), Positives = 47/85 (55%)

Query:    61 HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT- 119
             ++EL   +I G + S N    +NL  ++L+ N  SG IP  +G L KL++L L   +LT 
Sbjct:    97 YLELYSNNITGPIPS-NLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLTG 155

Query:   120 ----EIGKILLLQNLDLSHNNLSDS 140
                  +  I  LQ LDLS+N LS S
Sbjct:   156 SIPMSLTNITTLQVLDLSNNRLSGS 180

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0042802 "identical protein binding" evidence=IPI

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=TAS

GO:0009556 "microsporogenesis" evidence=IGI;IMP

GO:0010152 "pollen maturation" evidence=IMP

GO:0043234 "protein complex" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI;IMP

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0007030 "Golgi organization" evidence=IGI

GO:0010227 "floral organ abscission" evidence=IGI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009880 "embryonic pattern specification" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0016310 "phosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0051301 "cell division" evidence=RCA

TAIR|locus:2181042 AT5G01890 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 36/102 (35%), Positives = 56/102 (54%)

Query:    42 LVEGQDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQ 101
             L+ G   S+   ++ L   H+     S  G++ +   +C S L  INL  N+LSG+IP  
Sbjct:   444 LLNGTLPSEIGGAVSLKQLHLHRNRLS--GQIPAKISNC-SALNTINLSENELSGAIPGS 500

Query:   102 IGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSHNNLS 138
             IGSL  L+Y++L   NL+     EI K+  L   ++SHNN++
Sbjct:   501 IGSLSNLEYIDLSRNNLSGSLPKEIEKLSHLLTFNISHNNIT 542

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 35/88 (39%), Positives = 47/88 (53%)

Query:    62 IELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-E 120
             + L    I+G      F   SNL Y++L  N LSG+IPPQ G+L KL Y +L   +LT E
Sbjct:    82 LNLTNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGE 141

Query:   121 IGKIL-LLQNLDLSHNNLSDSQFRFVIP 147
             I   L  L+NL + +  L  +    VIP
Sbjct:   142 ISPSLGNLKNLTVLY--LHQNYLTSVIP 167

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

UNIPROTKB|Q15404 RSU1 "Ras suppressor protein 1" [Homo sapiens (taxid:9606)]

 Score = 115 (45.5 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 27/68 (39%), Positives = 41/68 (60%)

Query:    77 NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI----GKILLLQNLDL 132
             N +   NL+ +N +NN +   +P QI SL KLK+LNL    L  +    G +  L+ LDL
Sbjct:    58 NIAELKNLEVLNFFNNQIE-ELPTQISSLQKLKHLNLGMNRLNTLPRGFGSLPALEVLDL 116

Query:   133 SHNNLSDS 140
             ++NNLS++
Sbjct:   117 TYNNLSEN 124

GO:0007265 "Ras protein signal transduction" evidence=IEA

GO:0007165 "signal transduction" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0034329 "cell junction assembly" evidence=TAS

TAIR|locus:2124147 RLP51 "receptor like protein 51" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 33/89 (37%), Positives = 50/89 (56%)

Query:    62 IELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-- 119
             I+L +  +KG + + + +  SNL+ +NL  N +SG IP  IG L+ LK L+L    L+  
Sbjct:   217 IDLSDNLLKGSIPT-SITLLSNLKSLNLSKNTISGDIPDSIGDLISLKNLSLSSNKLSGP 275

Query:   120 ---EIGKILLLQNLDLSHNNLSDSQFRFV 145
                 I  I  L +LDLS N L+ +  RF+
Sbjct:   276 IPDSISSIPELTHLDLSGNQLNGTIPRFI 304

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2136313 AT4G39270 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 31/84 (36%), Positives = 50/84 (59%)

Query:    62 IELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTE- 120
             ++L + +I G++  L+ +   NL  ++L +N + GSIP  IG+L KL+ LNL    LT  
Sbjct:   155 LDLSKNAINGDI-PLSLTSLQNLSILDLSSNSVFGSIPANIGALSKLQRLNLSRNTLTSS 213

Query:   121 ----IGKILLLQNLDLSHNNLSDS 140
                 +G + +L +LDLS N +S S
Sbjct:   214 IPPSLGDLSVLIDLDLSFNGMSGS 237

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_395000005 hypothetical protein (964 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	165
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 6/103 (5%)

Query: 61  HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT- 119
           H++LV  ++ G + S +     NLQY+ L+ N LSG IPP I SL KL  L+L   +L+ 
Sbjct: 240 HLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298

Query: 120 EIGKILL-LQNLDLSH---NNLSDSQFRFVIPYLRLSVQCVWT 158
           EI ++++ LQNL++ H   NN +      +    RL V  +W+
Sbjct: 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 35/81 (43%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 62  IELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSL-LKLKYLNLRWKNLT- 119
           I+L   +I G++ S  F     +Q INL NN LSG IP  I +    L+YLNL   N T 
Sbjct: 74  IDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG 132

Query: 120 --EIGKILLLQNLDLSHNNLS 138
               G I  L+ LDLS+N LS
Sbjct: 133 SIPRGSIPNLETLDLSNNMLS 153

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 9e-07
 Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 6/75 (8%)

Query: 69  IKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGK 123
           ++G + + + S   +LQ INL  N + G+IPP +GS+  L+ L+L + +        +G+
Sbjct: 430 LRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488

Query: 124 ILLLQNLDLSHNNLS 138
           +  L+ L+L+ N+LS
Sbjct: 489 LTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 10/77 (12%)

Query: 69  IKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGK 123
           I  ELG +      +L++I L  N+LSG IP +IG L  L +L+L + NLT      +G 
Sbjct: 204 IPRELGQMK-----SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258

Query: 124 ILLLQNLDLSHNNLSDS 140
           +  LQ L L  N LS  
Sbjct: 259 LKNLQYLFLYQNKLSGP 275

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 10/75 (13%)

Query: 69  IKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGK 123
           I  ++GS     FS+L+ ++L  N L G IP  + +L  L++L L    L      E+G+
Sbjct: 156 IPNDIGS-----FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ 210

Query: 124 ILLLQNLDLSHNNLS 138
           +  L+ + L +NNLS
Sbjct: 211 MKSLKWIYLGYNNLS 225

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 6/82 (7%)

Query: 62  IELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-E 120
           ++L + S+ GE+  L      NL+ ++L++N+ +G IP  + SL +L+ L L     + E
Sbjct: 289 LDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347

Query: 121 IGKILLLQN----LDLSHNNLS 138
           I K L   N    LDLS NNL+
Sbjct: 348 IPKNLGKHNNLTVLDLSTNNLT 369

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL 132
               S L  + L  N LSG IP ++ S  KL  L+L    L+        ++ +L  LDL
Sbjct: 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554

Query: 133 SHNNLS 138
           S N LS
Sbjct: 555 SQNQLS 560

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 6e-04
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 7/61 (11%)

Query: 83  NLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL-----LQNLDLSHNN 136
           NL+ ++L NN L+  IP      L  LK L+L   NLT I          L++LDLS NN
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 137 L 137
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 82  SNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSHNN 136
             L+ ++L  N  SG++P ++GSL +L  L L    L+     E+     L +LDLSHN 
Sbjct: 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534

Query: 137 LS 138
           LS
Sbjct: 535 LS 536

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 74  GSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQ 128
           GS+      NL+ ++L NN LSG IP  IGS   LK L+L    L       +  +  L+
Sbjct: 132 GSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191

Query: 129 NLDLSHNNL 137
            L L+ N L
Sbjct: 192 FLTLASNQL 200

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 87  INLWNNDLSGSIPPQIGSLLKLKYLNLRWKNL-----TEIGKILLLQNLDLSHNNLSDS 140
           + L N  L G IP  I  L  L+ +NL   ++       +G I  L+ LDLS+N+ + S
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 36.4 bits (84), Expect = 0.004
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 7/81 (8%)

Query: 62  IELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-- 119
           I L    + G +    F+  S+L+Y+NL NN+ +GSIP   GS+  L+ L+L    L+  
Sbjct: 98  INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGE 155

Query: 120 ---EIGKILLLQNLDLSHNNL 137
              +IG    L+ LDL  N L
Sbjct: 156 IPNDIGSFSSLKVLDLGGNVL 176

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.59
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.58
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.49
PLN03150	623	hypothetical protein; Provisional	99.48
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.45
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.45
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.4
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.35
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.24
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.21
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.19
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.17
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.17
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.16
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.16
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.13
PLN03150	623	hypothetical protein; Provisional	99.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.11
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.06
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.97
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.92
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.92
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.91
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.86
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.83
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.78
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.7
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.67
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.61
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.6
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.48
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.43
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.39
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.37
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.36
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.36
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.33
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.28
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.19
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.16
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.96
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.82
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.78
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.78
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.71
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.54
PRK15386	426	type III secretion protein GogB; Provisional	97.36
PRK15386	426	type III secretion protein GogB; Provisional	97.23
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.19
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.18
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.17
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.14
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.98
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.87
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.83
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.73
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.58
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.55
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.4
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.87
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.49
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.4
smart00370	26	LRR Leucine-rich repeats, outliers.	95.23
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.23
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.74
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.19
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.95
smart00370	26	LRR Leucine-rich repeats, outliers.	93.95
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	91.35
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	89.44
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	88.91
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.24
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	87.28
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	85.74
KOG1947	482	consensus Leucine rich repeat proteins, some prote	82.15

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.59  E-value=2.4e-15  Score=130.43  Aligned_cols=101  Identities=26%  Similarity=0.427  Sum_probs=44.2

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL  132 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l  132 (165)
                      +|++|++++|.+.+.+ |..++.+++|++|++++|.+++.+|..++.+++|++|++++|.++     .++.+++|++|++
T Consensus       165 ~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  243 (968)
T PLN00113        165 SLKVLDLGGNVLVGKI-PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL  243 (968)
T ss_pred             CCCEEECccCcccccC-ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence            4444444444444444 444444444444444444444444444444444444444444433     2333444444444


Q ss_pred             cCCCCCCcccccccCCCCCcEEEccCC
Q 038525          133 SHNNLSDSQFRFVIPYLRLSVQCVWTC  159 (165)
Q Consensus       133 s~N~l~~~~p~~~~~l~~L~~L~l~~n  159 (165)
                      ++|.+.+.+|..+.++++|+.|++++|
T Consensus       244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n  270 (968)
T PLN00113        244 VYNNLTGPIPSSLGNLKNLQYLFLYQN  270 (968)
T ss_pred             cCceeccccChhHhCCCCCCEEECcCC
Confidence            444444334444444444444444433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.58  E-value=4.1e-15  Score=129.04  Aligned_cols=102  Identities=29%  Similarity=0.423  Sum_probs=46.1

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL  132 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l  132 (165)
                      +|++|++++|.+.+.+ |..++.+++|++|++++|.+++.+|..++.+++|+.|++++|.++     .+..+++|+.|++
T Consensus       213 ~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  291 (968)
T PLN00113        213 SLKWIYLGYNNLSGEI-PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL  291 (968)
T ss_pred             CccEEECcCCccCCcC-ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC
Confidence            3444444444444444 444444444444444444444444444444444444444444433     2333444444444


Q ss_pred             cCCCCCCcccccccCCCCCcEEEccCCc
Q 038525          133 SHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       133 s~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      ++|.+.+.+|..+.++++|+.|++++|+
T Consensus       292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~  319 (968)
T PLN00113        292 SDNSLSGEIPELVIQLQNLEILHLFSNN  319 (968)
T ss_pred             cCCeeccCCChhHcCCCCCcEEECCCCc
Confidence            4444444444444444444444444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.49  E-value=1.3e-15  Score=105.86  Aligned_cols=103  Identities=23%  Similarity=0.279  Sum_probs=69.5

Q ss_pred             ccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccCcCC
Q 038525           54 SLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKILLL  127 (165)
Q Consensus        54 ~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l~~L  127 (165)
                      .+. +++.|++++|+++ .+ |.+++.+++|+.|.++-|++. ..|..|+.++.|+.||+.+|.+.      .|-.++.|
T Consensus        54 ~l~-nlevln~~nnqie-~l-p~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tl  129 (264)
T KOG0617|consen   54 ELK-NLEVLNLSNNQIE-EL-PTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTL  129 (264)
T ss_pred             Hhh-hhhhhhcccchhh-hc-Chhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHH
Confidence            344 5667777777777 66 777777777777777777777 77777777777777777777765      34445556


Q ss_pred             CEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          128 QNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       128 ~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      +.|.+++|.++ .+|..++++++|+.|.+++|..
T Consensus       130 ralyl~dndfe-~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen  130 RALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             HHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence            66666666665 5566666666666666666543

>PLN03150 hypothetical protein; Provisional

Probab=99.48  E-value=9.9e-14  Score=115.39  Aligned_cols=102  Identities=25%  Similarity=0.344  Sum_probs=93.8

Q ss_pred             eeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEecc
Q 038525           59 WYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLS  133 (165)
Q Consensus        59 L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls  133 (165)
                      ++.|+|++|.+.|.+ |..++.+++|+.|++++|.++|.+|..++.+++|+.|++++|+++     .++.+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~i-p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFI-PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccC-CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            779999999999999 999999999999999999999999999999999999999999997     68899999999999


Q ss_pred             CCCCCCcccccccCC-CCCcEEEccCCcc
Q 038525          134 HNNLSDSQFRFVIPY-LRLSVQCVWTCHS  161 (165)
Q Consensus       134 ~N~l~~~~p~~~~~l-~~L~~L~l~~n~~  161 (165)
                      +|.++|.+|..+... .++..+++.+|..
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcc
Confidence            999999999988764 4677888888763

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.45  E-value=1.2e-15  Score=106.04  Aligned_cols=135  Identities=21%  Similarity=0.221  Sum_probs=116.0

Q ss_pred             cccccCCCccccccccccccCCCc--hhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCC-CCCCcC
Q 038525           25 VHVAASENRKTSFTQQRLVEGQDS--SQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLS-GSIPPQ  101 (165)
Q Consensus        25 ~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~~  101 (165)
                      ..+++....+.+|..+.+..+++.  +...+.++ +++.|+++-|++. .+ |..|+.++.|+.||+++|++. ..+|..
T Consensus        46 ~~vppnia~l~nlevln~~nnqie~lp~~issl~-klr~lnvgmnrl~-~l-prgfgs~p~levldltynnl~e~~lpgn  122 (264)
T KOG0617|consen   46 TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLP-KLRILNVGMNRLN-IL-PRGFGSFPALEVLDLTYNNLNENSLPGN  122 (264)
T ss_pred             eecCCcHHHhhhhhhhhcccchhhhcChhhhhch-hhhheecchhhhh-cC-ccccCCCchhhhhhccccccccccCCcc
Confidence            446677777788888888777763  33457788 8999999999998 77 999999999999999999985 357899


Q ss_pred             cCCCCCCCEEEcCCCCCC----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccCc
Q 038525          102 IGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHSTI  163 (165)
Q Consensus       102 ~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~  163 (165)
                      |..+..|+-|.+++|.+.    .++.+++|+.|.+.+|.+- .+|..++.++.|+.|.+.+|+.++
T Consensus       123 ff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  123 FFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             hhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeee
Confidence            999999999999999988    8899999999999999997 789999999999999999998653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.45  E-value=5.9e-15  Score=118.45  Aligned_cols=112  Identities=18%  Similarity=0.137  Sum_probs=78.4

Q ss_pred             CchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CC
Q 038525           47 DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EI  121 (165)
Q Consensus        47 ~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~  121 (165)
                      +....|-.+. ++++|+|..|++...- ...+.+++.|+.|++|+|.|..+.++.+...++|++|+|++|+++     +|
T Consensus       260 L~DG~Fy~l~-kme~l~L~~N~l~~vn-~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf  337 (873)
T KOG4194|consen  260 LDDGAFYGLE-KMEHLNLETNRLQAVN-EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF  337 (873)
T ss_pred             ccCcceeeec-ccceeecccchhhhhh-cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH
Confidence            3455566666 6778888888877444 667778888888888888888777787777888888888888877     45


Q ss_pred             ccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525          122 GKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       122 ~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      ..+..|++|+|++|++....-..|..+.+|+.|+|++|.
T Consensus       338 ~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~  376 (873)
T KOG4194|consen  338 RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE  376 (873)
T ss_pred             HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence            556666666666666654444455566666666666665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.40  E-value=1e-13  Score=111.46  Aligned_cols=116  Identities=21%  Similarity=0.147  Sum_probs=72.7

Q ss_pred             CCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCC------------------------CCCCcC
Q 038525           46 QDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLS------------------------GSIPPQ  101 (165)
Q Consensus        46 ~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~------------------------~~~p~~  101 (165)
                      .+....|..+. +|..|.|+.|+++ .+|+..|..+++|+.|||..|+|.                        ..-...
T Consensus       187 ~l~~~~F~~ln-sL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~  264 (873)
T KOG4194|consen  187 TLETGHFDSLN-SLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGA  264 (873)
T ss_pred             ccccccccccc-hheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcc
Confidence            33444555555 5556666666655 332445555555555555555544                        223334


Q ss_pred             cCCCCCCCEEEcCCCCCC-----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccCc
Q 038525          102 IGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHSTI  163 (165)
Q Consensus       102 ~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~  163 (165)
                      |..+.++++|+|..|+++     .+-++++|+.|++|.|.|....++.+...++|++|+|++|+++.
T Consensus       265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~  331 (873)
T KOG4194|consen  265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR  331 (873)
T ss_pred             eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence            555566666666666665     55677778888888888877777788888888888888887643

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.35  E-value=1.1e-13  Score=112.51  Aligned_cols=101  Identities=26%  Similarity=0.296  Sum_probs=79.4

Q ss_pred             eeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-------------------
Q 038525           59 WYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-------------------  119 (165)
Q Consensus        59 L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-------------------  119 (165)
                      +.+|++|+|++. .+|-+-|.+++.|-+||||+|++. .+|+++..+.+|++|++++|++.                   
T Consensus       128 ~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms  205 (1255)
T KOG0444|consen  128 SIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS  205 (1255)
T ss_pred             cEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence            446666677766 442344567777788888888888 77888888888999999998764                   


Q ss_pred             -----------CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          120 -----------EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       120 -----------~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                                 ++..+.+|..+|+|.|.+. .+|+.+.++.+|+.|+|++|+++
T Consensus       206 ~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  206 NTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             cccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence                       3445667888899999998 89999999999999999999874

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.24  E-value=5.5e-13  Score=108.40  Aligned_cols=101  Identities=22%  Similarity=0.242  Sum_probs=62.8

Q ss_pred             eEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCC-CCCcCcCCCCCCCEEEcCCCCCC----CCccCcCCCEEeccC
Q 038525           60 YHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSG-SIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLSH  134 (165)
Q Consensus        60 ~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls~  134 (165)
                      ++|++|.|+++ .+ |..+..++.|+.|++.+|+++- -+|..++.+..|+++..++|.+.    .+.++..|+.|.|++
T Consensus       271 EtLNlSrNQLt-~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~  348 (1255)
T KOG0444|consen  271 ETLNLSRNQLT-VL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH  348 (1255)
T ss_pred             hhhccccchhc-cc-hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc
Confidence            33444444444 34 4555555555555555555431 24555555555555555555554    566777788888888


Q ss_pred             CCCCCcccccccCCCCCcEEEccCCccCc
Q 038525          135 NNLSDSQFRFVIPYLRLSVQCVWTCHSTI  163 (165)
Q Consensus       135 N~l~~~~p~~~~~l~~L~~L~l~~n~~~~  163 (165)
                      |.+. .+|+.+.-++.|+.|+++.|..++
T Consensus       349 NrLi-TLPeaIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  349 NRLI-TLPEAIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             ccee-echhhhhhcCCcceeeccCCcCcc
Confidence            8876 678888888888888888887653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.21  E-value=2.2e-12  Score=99.96  Aligned_cols=104  Identities=19%  Similarity=0.161  Sum_probs=70.7

Q ss_pred             hccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCC
Q 038525           53 RSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLL  127 (165)
Q Consensus        53 ~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L  127 (165)
                      +.++ ++..|++++|-+. .+ |..++.+..|+.+++|.|++. .+|.-+..+..++.+-.++|++.     .+.++.+|
T Consensus       432 ~~l~-kLt~L~L~NN~Ln-~L-P~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL  507 (565)
T KOG0472|consen  432 SQLQ-KLTFLDLSNNLLN-DL-PEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL  507 (565)
T ss_pred             Hhhh-cceeeecccchhh-hc-chhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence            3344 4455555555555 44 555555555555555555555 55554444455555545555554     47788999


Q ss_pred             CEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          128 QNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       128 ~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      .+||+.+|.+. .+|..++++++|++|.+++|.+
T Consensus       508 ~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  508 TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             ceeccCCCchh-hCChhhccccceeEEEecCCcc
Confidence            99999999998 7899999999999999999975

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.19  E-value=1.7e-11  Score=71.89  Aligned_cols=60  Identities=30%  Similarity=0.473  Sum_probs=52.1

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNL  118 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l  118 (165)
                      +|++|++++|++. .+++..|.++++|++|++++|.++...|..|..+++|+++++++|+|
T Consensus         2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            6779999999998 44378899999999999999999977777889999999999999875

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.17  E-value=1.5e-12  Score=100.52  Aligned_cols=108  Identities=21%  Similarity=0.194  Sum_probs=89.3

Q ss_pred             hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCC-CCCC-----CCccCc
Q 038525           52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRW-KNLT-----EIGKIL  125 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~-n~l~-----~~~~l~  125 (165)
                      ...+|...++++|..|+|+ .+||..|+.+++|+.||||+|.|+.+-|++|.++..+..|-+-+ |+|+     .|+++.
T Consensus        62 P~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~  140 (498)
T KOG4237|consen   62 PANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS  140 (498)
T ss_pred             cccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence            4566667889999999999 55589999999999999999999988899999999987777665 8888     678888


Q ss_pred             CCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525          126 LLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       126 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      +++.|.+.-|++.....+.|..+++|..|.+-+|+
T Consensus       141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~  175 (498)
T KOG4237|consen  141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK  175 (498)
T ss_pred             HHHHHhcChhhhcchhHHHHHHhhhcchhcccchh
Confidence            88888888888876666777778777777776665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.17  E-value=5e-13  Score=103.44  Aligned_cols=97  Identities=26%  Similarity=0.220  Sum_probs=61.3

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcC-CCCCCCEEEcCCCCCC----CCccCcCCCEEec
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIG-SLLKLKYLNLRWKNLT----EIGKILLLQNLDL  132 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~-~l~~L~~L~ls~n~l~----~~~~l~~L~~L~l  132 (165)
                      ++..|++..|++. .+ | .|+++..|++++++.|+|+ .+|.+.. ++.++.+||+..|+++    .+..+.+|.+||+
T Consensus       207 ~L~~LyL~~Nki~-~l-P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDl  282 (565)
T KOG0472|consen  207 SLELLYLRRNKIR-FL-P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDL  282 (565)
T ss_pred             hhHHHHhhhcccc-cC-C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcc
Confidence            4445566666655 44 4 5666666666666666666 5555554 5666677777777766    4555666777777


Q ss_pred             cCCCCCCcccccccCCCCCcEEEccCCc
Q 038525          133 SHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       133 s~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      |+|.++ .+|..++++ +|++|.+.+|.
T Consensus       283 SNN~is-~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  283 SNNDIS-SLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             cCCccc-cCCcccccc-eeeehhhcCCc
Confidence            777776 456666666 67777776664

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.16  E-value=1.5e-11  Score=86.70  Aligned_cols=77  Identities=23%  Similarity=0.323  Sum_probs=21.5

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCc-CCCCCCCEEEcCCCCCC------CCccCcCCCEE
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLT------EIGKILLLQNL  130 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~-~~l~~L~~L~ls~n~l~------~~~~l~~L~~L  130 (165)
                      +++.|++++|.++ .+ + .+..++.|+.|++++|.|+ .+++.+ ..+++|+.|++++|++.      .+..+++|+.|
T Consensus        43 ~L~~L~Ls~N~I~-~l-~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L  118 (175)
T PF14580_consen   43 KLEVLDLSNNQIT-KL-E-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL  118 (175)
T ss_dssp             T--EEE-TTS--S----T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred             CCCEEECCCCCCc-cc-c-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence            3445555555555 22 2 3444555555555555555 232222 23455555555555554      33344555555


Q ss_pred             eccCCCCC
Q 038525          131 DLSHNNLS  138 (165)
Q Consensus       131 ~ls~N~l~  138 (165)
                      ++.+|+++
T Consensus       119 ~L~~NPv~  126 (175)
T PF14580_consen  119 SLEGNPVC  126 (175)
T ss_dssp             E-TT-GGG
T ss_pred             eccCCccc
Confidence            55555553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.16  E-value=4.3e-11  Score=84.43  Aligned_cols=100  Identities=23%  Similarity=0.306  Sum_probs=39.2

Q ss_pred             CeeEEEeecCCCCcccCCcccC-CCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCCC-----ccCcCCCEEe
Q 038525           58 GWYHIELVECSIKGELGSLNFS-CFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI-----GKILLLQNLD  131 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~-~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~~-----~~l~~L~~L~  131 (165)
                      ++++|++++|.++ .+ . .++ .+.+|+.|++++|.|+ .++ .+..+++|+.|++++|+++.+     ..+++|+.|+
T Consensus        20 ~~~~L~L~~n~I~-~I-e-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TI-E-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccc-cc-c-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            5779999999998 44 3 455 5889999999999999 454 577899999999999999833     2589999999


Q ss_pred             ccCCCCCCcc-cccccCCCCCcEEEccCCccC
Q 038525          132 LSHNNLSDSQ-FRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       132 ls~N~l~~~~-p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      +++|++...- =..+..+++|+.|++.+|...
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            9999996421 135678999999999999753

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.13  E-value=6.8e-12  Score=105.21  Aligned_cols=123  Identities=21%  Similarity=0.299  Sum_probs=93.7

Q ss_pred             ccccccccCCCchhhhh---ccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEc
Q 038525           37 FTQQRLVEGQDSSQCFR---SLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL  113 (165)
Q Consensus        37 l~~~~~~~~~~~~~~~~---~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l  113 (165)
                      |..+.+..+.+...++.   ... +|+.|+|++|++. .+|...+.++..|+.|+||+|+++ .+|+.+..+..|++|..
T Consensus       361 Lq~LylanN~Ltd~c~p~l~~~~-hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  361 LQELYLANNHLTDSCFPVLVNFK-HLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA  437 (1081)
T ss_pred             HHHHHHhcCcccccchhhhcccc-ceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence            44444444555554443   334 6889999999888 553667788889999999999998 88888888999999999


Q ss_pred             CCCCCC---CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          114 RWKNLT---EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       114 s~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      .+|++.   .+..++.|+.+|++.|.++...-..-...++|++|++++|.-+
T Consensus       438 hsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  438 HSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             cCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence            999887   7788899999999999997533333344589999999999743

>PLN03150 hypothetical protein; Provisional

Probab=99.12  E-value=1.2e-10  Score=97.14  Aligned_cols=79  Identities=27%  Similarity=0.272  Sum_probs=74.8

Q ss_pred             CCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEcc
Q 038525           83 NLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVW  157 (165)
Q Consensus        83 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~  157 (165)
                      .++.|+|++|.++|.+|..++.+++|+.|++++|.++     .++.+++|+.|++++|+++|.+|+.+.++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            3788999999999999999999999999999999997     58899999999999999999999999999999999999


Q ss_pred             CCcc
Q 038525          158 TCHS  161 (165)
Q Consensus       158 ~n~~  161 (165)
                      +|+.
T Consensus       499 ~N~l  502 (623)
T PLN03150        499 GNSL  502 (623)
T ss_pred             CCcc
Confidence            9975

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.11  E-value=9.8e-12  Score=99.78  Aligned_cols=130  Identities=21%  Similarity=0.197  Sum_probs=109.5

Q ss_pred             cccccCCCccccccccccccCCCchh--hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCc
Q 038525           25 VHVAASENRKTSFTQQRLVEGQDSSQ--CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQI  102 (165)
Q Consensus        25 ~~~~~~~~~l~~l~~~~~~~~~~~~~--~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~  102 (165)
                      ..++.+...++.+...++..+++..-  ....++  |+.|.+++|+++ .+ |..++...+|..||.+.|.+. .+|.++
T Consensus       111 r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp--Lkvli~sNNkl~-~l-p~~ig~~~tl~~ld~s~nei~-slpsql  185 (722)
T KOG0532|consen  111 RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP--LKVLIVSNNKLT-SL-PEEIGLLPTLAHLDVSKNEIQ-SLPSQL  185 (722)
T ss_pred             eecchhhhhhhHHHHhhhccchhhcCChhhhcCc--ceeEEEecCccc-cC-CcccccchhHHHhhhhhhhhh-hchHHh
Confidence            55677777888888888877776322  223344  779999999998 77 889999999999999999998 889999


Q ss_pred             CCCCCCCEEEcCCCCCC----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          103 GSLLKLKYLNLRWKNLT----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       103 ~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      +.+.+|+.|.+..|++.    .+..++ |..||+|.|++. .+|-.|.+|.+|++|-|.+|..
T Consensus       186 ~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  186 GYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             hhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCC
Confidence            99999999999999887    555444 899999999998 7999999999999999999963

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.06  E-value=1.7e-10  Score=67.52  Aligned_cols=59  Identities=27%  Similarity=0.271  Sum_probs=35.3

Q ss_pred             CCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCCCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525           83 NLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus        83 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      +|++|++++|+++...+..|                   .++++|++|++++|.++...|+.|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f-------------------~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSF-------------------SNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTT-------------------TTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHH-------------------cCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45666666666663333344                   445555555566666665555666777777777777665

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.97  E-value=2.3e-09  Score=90.73  Aligned_cols=98  Identities=19%  Similarity=0.092  Sum_probs=63.3

Q ss_pred             CeeEEEeecCCCCcccCCcccCC-----------------CCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCC
Q 038525           58 GWYHIELVECSIKGELGSLNFSC-----------------FSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTE  120 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~-----------------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~  120 (165)
                      +|++|++++|+++ .+ |.....                 ..+|+.|++++|.++ .+|..   ..+|+.|++++|+++.
T Consensus       343 ~Lq~LdLS~N~Ls-~L-P~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss  416 (788)
T PRK15387        343 GLQELSVSDNQLA-SL-PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS  416 (788)
T ss_pred             ccceEecCCCccC-CC-CCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC
Confidence            5667777777776 34 322111                 124555666666655 34432   2456667777777663


Q ss_pred             Ccc-CcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          121 IGK-ILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       121 ~~~-l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      +.. ..+|+.|++++|+++ .+|+.+..+++|+.|++++|+..
T Consensus       417 IP~l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        417 LPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             CCcchhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence            222 245777888888887 68888999999999999999863

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.92  E-value=4.8e-10  Score=85.75  Aligned_cols=60  Identities=27%  Similarity=0.390  Sum_probs=26.9

Q ss_pred             CCCCCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEcCCCCCC---------CCccCcCCCEEeccCCCCC
Q 038525           79 SCFSNLQYINLWNNDLSGS----IPPQIGSLLKLKYLNLRWKNLT---------EIGKILLLQNLDLSHNNLS  138 (165)
Q Consensus        79 ~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~ls~n~l~---------~~~~l~~L~~L~ls~N~l~  138 (165)
                      ..+++|++|++++|.+++.    ++..+...++|+.|++++|.++         .+..+++|++|++++|.++
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            3344455555555544421    1122233345555555555443         2334445555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.92  E-value=1.4e-10  Score=87.30  Aligned_cols=99  Identities=21%  Similarity=0.164  Sum_probs=63.2

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSH  134 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~  134 (165)
                      .++.|++|+|.+. .+  ..+..+++|+.||+|+|.++ .+-.+-..+.+.+.|.+++|.+.   .++.+-+|..||+++
T Consensus       308 kir~L~lS~N~i~-~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~  383 (490)
T KOG1259|consen  308 KLRRLILSQNRIR-TV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSS  383 (490)
T ss_pred             ceeEEecccccee-ee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccc
Confidence            5556666666655 22  13555566666666666655 33333344555666666666555   566677888899999


Q ss_pred             CCCCCccc--ccccCCCCCcEEEccCCcc
Q 038525          135 NNLSDSQF--RFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       135 N~l~~~~p--~~~~~l~~L~~L~l~~n~~  161 (165)
                      |+|.. ..  ..+++++.|+++.+.+|..
T Consensus       384 N~Ie~-ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  384 NQIEE-LDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             cchhh-HHHhcccccccHHHHHhhcCCCc
Confidence            98863 22  3678888899998888865

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.91  E-value=7e-09  Score=87.91  Aligned_cols=94  Identities=24%  Similarity=0.260  Sum_probs=53.6

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCCC--ccCcCCCEEeccCC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI--GKILLLQNLDLSHN  135 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~~--~~l~~L~~L~ls~N  135 (165)
                      .++.|++++|.++ .+ |..+.  ++|++|++++|.++ .+|..+.  .+|+.|++++|.++.+  .-.++|+.|++++|
T Consensus       200 ~L~~L~Ls~N~Lt-sL-P~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N  272 (754)
T PRK15370        200 QITTLILDNNELK-SL-PENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITELPERLPSALQSLDLFHN  272 (754)
T ss_pred             CCcEEEecCCCCC-cC-Chhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCcCChhHhCCCCEEECcCC
Confidence            4557777777776 45 44443  46777777777766 4555432  3566666666666511  11235666666666


Q ss_pred             CCCCcccccccCCCCCcEEEccCCcc
Q 038525          136 NLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       136 ~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      +++ .+|..+.  .+|+.|++++|+.
T Consensus       273 ~L~-~LP~~l~--~sL~~L~Ls~N~L  295 (754)
T PRK15370        273 KIS-CLPENLP--EELRYLSVYDNSI  295 (754)
T ss_pred             ccC-ccccccC--CCCcEEECCCCcc
Confidence            665 3554443  3566666666653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.89  E-value=7.7e-10  Score=84.63  Aligned_cols=101  Identities=21%  Similarity=0.210  Sum_probs=47.0

Q ss_pred             eeEEEeecCCCCc----ccCCcccCCC-CCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEcCCCCCC---------C
Q 038525           59 WYHIELVECSIKG----ELGSLNFSCF-SNLQYINLWNNDLSGS----IPPQIGSLLKLKYLNLRWKNLT---------E  120 (165)
Q Consensus        59 L~~L~ls~n~l~~----~~~p~~~~~l-~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~ls~n~l~---------~  120 (165)
                      +++|++++|.+.+    .+ ...+..+ ++|+.|++++|.+++.    ++..+..+++|+.|++++|.++         .
T Consensus       110 L~~L~ls~~~~~~~~~~~l-~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  188 (319)
T cd00116         110 LQELKLNNNGLGDRGLRLL-AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG  188 (319)
T ss_pred             ccEEEeeCCccchHHHHHH-HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence            5555555555542    11 1223334 5555555555555522    1222334445555555555554         1


Q ss_pred             CccCcCCCEEeccCCCCCCc----ccccccCCCCCcEEEccCCc
Q 038525          121 IGKILLLQNLDLSHNNLSDS----QFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       121 ~~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~l~~n~  160 (165)
                      +...++|+.|++++|.+++.    ++..+..+++|++|++++|+
T Consensus       189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence            22334555555555555422    12233444555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.86  E-value=3.4e-10  Score=87.64  Aligned_cols=92  Identities=18%  Similarity=0.137  Sum_probs=77.2

Q ss_pred             CCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEeccCCCCCCcccc
Q 038525           69 IKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFR  143 (165)
Q Consensus        69 l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~  143 (165)
                      ..+..|...|.++++|++|++++|+++++-+.+|.+...++.|.|..|++.     .|.++..|+.|+|.+|+|+...|.
T Consensus       261 ~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~  340 (498)
T KOG4237|consen  261 PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG  340 (498)
T ss_pred             cCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence            333443456888999999999999999888888888999999999999887     688888999999999999888888


Q ss_pred             cccCCCCCcEEEccCCc
Q 038525          144 FVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       144 ~~~~l~~L~~L~l~~n~  160 (165)
                      .|..+.+|..|.+-.|.
T Consensus       341 aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  341 AFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             cccccceeeeeehccCc
Confidence            89999999999887765

>PLN03210 Resistant to P

Probab=98.86  E-value=1.4e-08  Score=90.22  Aligned_cols=101  Identities=18%  Similarity=0.191  Sum_probs=74.8

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCC-CCCC-ccCcCCCEEeccCC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKN-LTEI-GKILLLQNLDLSHN  135 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~-l~~~-~~l~~L~~L~ls~N  135 (165)
                      +|++|++++|...+.+ |..++.+++|+.|++++|..-+.+|..+ .+++|+.|++++|. +..+ ...++++.|++++|
T Consensus       779 sL~~L~Ls~n~~l~~l-P~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n  856 (1153)
T PLN03210        779 SLTRLFLSDIPSLVEL-PSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT  856 (1153)
T ss_pred             cchheeCCCCCCcccc-ChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC
Confidence            6889999999877788 8889999999999999875433777765 67888888888764 3322 22356777777777


Q ss_pred             CCCCcccccccCCCCCcEEEccCCcc
Q 038525          136 NLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       136 ~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      .++ .+|..+..+++|++|++++|+.
T Consensus       857 ~i~-~iP~si~~l~~L~~L~L~~C~~  881 (1153)
T PLN03210        857 GIE-EVPWWIEKFSNLSFLDMNGCNN  881 (1153)
T ss_pred             CCc-cChHHHhcCCCCCEEECCCCCC
Confidence            776 5677777777777777776543

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.86  E-value=1.6e-08  Score=89.85  Aligned_cols=104  Identities=17%  Similarity=0.141  Sum_probs=56.9

Q ss_pred             hccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCC-CC---CCccCcCCC
Q 038525           53 RSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKN-LT---EIGKILLLQ  128 (165)
Q Consensus        53 ~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~-l~---~~~~l~~L~  128 (165)
                      ..++.+++.|++.++.+. .+ |..| ...+|+.|++++|.+. .+|..+..+++|+.++++++. ++   .+..+++|+
T Consensus       585 ~~lp~~Lr~L~~~~~~l~-~l-P~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le  660 (1153)
T PLN03210        585 DYLPPKLRLLRWDKYPLR-CM-PSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLE  660 (1153)
T ss_pred             hhcCcccEEEEecCCCCC-CC-CCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCccccCCccc
Confidence            334434556666666554 44 5444 3456666666666665 455555556666666666543 22   444455556


Q ss_pred             EEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525          129 NLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       129 ~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      .|++++|.....+|..+..+++|+.|++++|.
T Consensus       661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~  692 (1153)
T PLN03210        661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE  692 (1153)
T ss_pred             EEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence            66665554444555555555555555555543

syringae 6; Provisional

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.83  E-value=4.1e-10  Score=84.90  Aligned_cols=98  Identities=16%  Similarity=0.165  Sum_probs=81.2

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCC----CccCcCCCEEecc
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTE----IGKILLLQNLDLS  133 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~----~~~l~~L~~L~ls  133 (165)
                      .|+++|+|+|.++ .+ ..++.-.+.++.|++|+|.+. .+. .+..+.+|+.||+|+|.++.    -..+-+.++|.++
T Consensus       285 ~LtelDLS~N~I~-~i-DESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QI-DESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchh-hh-hhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            4779999999998 77 778888999999999999998 444 37889999999999999882    2245678899999


Q ss_pred             CCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          134 HNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       134 ~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      .|.+. .+ ..++++-+|..|++++|++
T Consensus       361 ~N~iE-~L-SGL~KLYSLvnLDl~~N~I  386 (490)
T KOG1259|consen  361 QNKIE-TL-SGLRKLYSLVNLDLSSNQI  386 (490)
T ss_pred             hhhHh-hh-hhhHhhhhheeccccccch
Confidence            99986 33 4678888999999999974

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.82  E-value=1.1e-10  Score=98.21  Aligned_cols=99  Identities=22%  Similarity=0.200  Sum_probs=78.7

Q ss_pred             eeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCc-CcCCCCCCCEEEcCCCCCC----CCccCcCCCEEecc
Q 038525           59 WYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPP-QIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLS  133 (165)
Q Consensus        59 L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls  133 (165)
                      |+.|++.+|.++... -+.+.++++|+.|+|++|++. .+|+ .+.++..|+.|++|+|+++    .+..+..|++|...
T Consensus       361 Lq~LylanN~Ltd~c-~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah  438 (1081)
T KOG0618|consen  361 LQELYLANNHLTDSC-FPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAH  438 (1081)
T ss_pred             HHHHHHhcCcccccc-hhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhc
Confidence            566778888877655 456778888888888888888 6665 4567888888888888887    56677888888888


Q ss_pred             CCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          134 HNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       134 ~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      +|++. ..| .+..++.|+++|++.|..
T Consensus       439 sN~l~-~fP-e~~~l~qL~~lDlS~N~L  464 (1081)
T KOG0618|consen  439 SNQLL-SFP-ELAQLPQLKVLDLSCNNL  464 (1081)
T ss_pred             CCcee-ech-hhhhcCcceEEecccchh
Confidence            88887 677 788889999999988864

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.78  E-value=1.3e-08  Score=86.25  Aligned_cols=34  Identities=21%  Similarity=0.048  Sum_probs=19.5

Q ss_pred             cCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          125 LLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       125 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      ++|+.|++++|+++ .+|..+.  ++|+.|++++|+.
T Consensus       346 ~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~L  379 (754)
T PRK15370        346 PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNAL  379 (754)
T ss_pred             CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcC
Confidence            35666666666665 3454442  4666666666654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.70  E-value=7.9e-08  Score=81.62  Aligned_cols=95  Identities=19%  Similarity=0.117  Sum_probs=49.4

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCCC-ccCcCCCEEeccCCC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI-GKILLLQNLDLSHNN  136 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~~-~~l~~L~~L~ls~N~  136 (165)
                      +|++|++++|+++ .+ |..   .++|+.|++++|.++ .+|..   ...|+.|++++|+++.+ ...++|+.|++++|+
T Consensus       243 ~Lk~LdLs~N~Lt-sL-P~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~  313 (788)
T PRK15387        243 ELRTLEVSGNQLT-SL-PVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ  313 (788)
T ss_pred             CCcEEEecCCccC-cc-cCc---ccccceeeccCCchh-hhhhc---hhhcCEEECcCCccccccccccccceeECCCCc
Confidence            4445555555544 33 321   234444555555444 33331   23455666666666622 134678888888888


Q ss_pred             CCCcccccccC----------------C-CCCcEEEccCCccC
Q 038525          137 LSDSQFRFVIP----------------Y-LRLSVQCVWTCHST  162 (165)
Q Consensus       137 l~~~~p~~~~~----------------l-~~L~~L~l~~n~~~  162 (165)
                      +++ +|.....                + .+|+.|++++|+..
T Consensus       314 L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls  355 (788)
T PRK15387        314 LAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA  355 (788)
T ss_pred             ccc-CCCCcccccccccccCccccccccccccceEecCCCccC
Confidence            874 4432111                1 25677777777654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.67  E-value=1e-08  Score=81.03  Aligned_cols=119  Identities=26%  Similarity=0.325  Sum_probs=63.3

Q ss_pred             cccccccccCCCchh--hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEc
Q 038525           36 SFTQQRLVEGQDSSQ--CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL  113 (165)
Q Consensus        36 ~l~~~~~~~~~~~~~--~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l  113 (165)
                      .|..+++..+.+...  ....++ .++.|++++|++. .+ |...+..+.|+.|++++|++. .+|........|+++.+
T Consensus       141 nL~~L~l~~N~i~~l~~~~~~l~-~L~~L~l~~N~l~-~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~  216 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLRNLP-NLKNLDLSFNDLS-DL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDL  216 (394)
T ss_pred             hcccccccccchhhhhhhhhccc-cccccccCCchhh-hh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhh
Confidence            344444444444332  344455 5666666666666 44 444445666666666666666 55555444555666666


Q ss_pred             CCCC-CC--------------------------CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525          114 RWKN-LT--------------------------EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       114 s~n~-l~--------------------------~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      ++|+ +.                          .++.+++++.|++++|.++ .++. +..+.+++.|++++|+
T Consensus       217 ~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~  288 (394)
T COG4886         217 SNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNS  288 (394)
T ss_pred             cCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccc-cccc-ccccCccCEEeccCcc
Confidence            6663 22                          2333444555555555555 2332 5555556666665554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.61  E-value=4e-08  Score=53.54  Aligned_cols=35  Identities=31%  Similarity=0.441  Sum_probs=16.8

Q ss_pred             eeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCC
Q 038525           59 WYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLS   95 (165)
Q Consensus        59 L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~   95 (165)
                      |++|++++|+++ .+ |+.++.+++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~-~l-~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DL-PPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SH-GGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-cc-CchHhCCCCCCEEEecCCCCC
Confidence            445555555555 34 334555555555555555554

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.60  E-value=3.6e-08  Score=77.94  Aligned_cols=85  Identities=33%  Similarity=0.460  Sum_probs=61.6

Q ss_pred             eeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccCC
Q 038525           59 WYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSHN  135 (165)
Q Consensus        59 L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~N  135 (165)
                      ++++.+++|... .. +..+..+..+..+.+++|++. ..+..++.+..+++|++++|.++   .++.+.+++.+++++|
T Consensus       211 L~~l~~~~N~~~-~~-~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n  287 (394)
T COG4886         211 LEELDLSNNSII-EL-LSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGN  287 (394)
T ss_pred             hhhhhhcCCcce-ec-chhhhhcccccccccCCceee-eccchhccccccceeccccccccccccccccCccCEEeccCc
Confidence            445555555432 23 445566666666667777766 44677888899999999999998   6778899999999999


Q ss_pred             CCCCccccccc
Q 038525          136 NLSDSQFRFVI  146 (165)
Q Consensus       136 ~l~~~~p~~~~  146 (165)
                      .+....|....
T Consensus       288 ~~~~~~~~~~~  298 (394)
T COG4886         288 SLSNALPLIAL  298 (394)
T ss_pred             cccccchhhhc
Confidence            99866665443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.48  E-value=3.1e-09  Score=85.74  Aligned_cols=99  Identities=20%  Similarity=0.266  Sum_probs=66.8

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcCCCEEecc
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLS  133 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls  133 (165)
                      .++.++++.|+++ .+ |..+..++ |+.|-+++|+++ .+|..++....|..||.+.|.+.    .++.+.+|+.|.+.
T Consensus       122 ~lt~l~ls~NqlS-~l-p~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vr  197 (722)
T KOG0532|consen  122 ALTFLDLSSNQLS-HL-PDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVR  197 (722)
T ss_pred             HHHHhhhccchhh-cC-ChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHh
Confidence            4556677777766 55 55555554 666677777776 66777776677777777777665    56677777777777


Q ss_pred             CCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          134 HNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       134 ~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      .|.+. .+|+.+. ...|..||++.||.+
T Consensus       198 Rn~l~-~lp~El~-~LpLi~lDfScNkis  224 (722)
T KOG0532|consen  198 RNHLE-DLPEELC-SLPLIRLDFSCNKIS  224 (722)
T ss_pred             hhhhh-hCCHHHh-CCceeeeecccCcee
Confidence            77776 5666666 446677888888753

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.43  E-value=7.3e-08  Score=76.95  Aligned_cols=100  Identities=22%  Similarity=0.185  Sum_probs=69.6

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSH  134 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~  134 (165)
                      +++.+++.+|++.+ + ...+..+++|++|++++|.|+...+  +..++.|+.|++++|.++   .+..+..|+.+++++
T Consensus        96 ~l~~l~l~~n~i~~-i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~  171 (414)
T KOG0531|consen   96 SLEALDLYDNKIEK-I-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSY  171 (414)
T ss_pred             ceeeeeccccchhh-c-ccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccCCccchhhhcccCCc
Confidence            56688888888774 3 3336777888888888888874332  455667888888888877   555577788888888


Q ss_pred             CCCCCccccc-ccCCCCCcEEEccCCccC
Q 038525          135 NNLSDSQFRF-VIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       135 N~l~~~~p~~-~~~l~~L~~L~l~~n~~~  162 (165)
                      |.+...-+ . ...+..++.+++.+|...
T Consensus       172 n~i~~ie~-~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  172 NRIVDIEN-DELSELISLEELDLGGNSIR  199 (414)
T ss_pred             chhhhhhh-hhhhhccchHHHhccCCchh
Confidence            88774333 1 466777777777777653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.39  E-value=4.9e-09  Score=86.85  Aligned_cols=105  Identities=26%  Similarity=0.222  Sum_probs=79.2

Q ss_pred             hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCC
Q 038525           52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQ  128 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~  128 (165)
                      ++-++ .++.|+|++|++. ..  ..+..+++|+.||+++|.+. .+|.--..-.+|+.|.+++|.++   .+.++.+|+
T Consensus       183 Lqll~-ale~LnLshNk~~-~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~  257 (1096)
T KOG1859|consen  183 LQLLP-ALESLNLSHNKFT-KV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLY  257 (1096)
T ss_pred             HHHHH-Hhhhhccchhhhh-hh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhhhhHHhhhhhh
Confidence            44455 6779999999988 33  37888999999999999998 66652212234999999999988   778889999


Q ss_pred             EEeccCCCCCCcc-cccccCCCCCcEEEccCCcc
Q 038525          129 NLDLSHNNLSDSQ-FRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       129 ~L~ls~N~l~~~~-p~~~~~l~~L~~L~l~~n~~  161 (165)
                      .||+++|-+.+-- -+.+..+..|+.|+|.+|..
T Consensus       258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            9999999886411 12345567888999998864

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.37  E-value=5.4e-07  Score=49.04  Aligned_cols=38  Identities=18%  Similarity=0.060  Sum_probs=25.7

Q ss_pred             cCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccCc
Q 038525          125 LLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHSTI  163 (165)
Q Consensus       125 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~  163 (165)
                      ++|++|++++|+++ .+|..+.++++|+.|++++|+...
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            35777777777777 566667777777777777777643

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.36  E-value=7.8e-07  Score=63.62  Aligned_cols=98  Identities=18%  Similarity=0.137  Sum_probs=79.4

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccCcCCCEEe
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKILLLQNLD  131 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l~~L~~L~  131 (165)
                      ....+|+++|.+..   -..|..++.|.+|.+++|.|+.+.|.--..+++|+.|.+.+|++.      .+..+++|++|.
T Consensus        43 ~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhh---cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            45589999999874   337899999999999999999666654445788999999999988      667889999999


Q ss_pred             ccCCCCCCccc---ccccCCCCCcEEEccC
Q 038525          132 LSHNNLSDSQF---RFVIPYLRLSVQCVWT  158 (165)
Q Consensus       132 ls~N~l~~~~p---~~~~~l~~L~~L~l~~  158 (165)
                      +-+|.++..--   -.+..+++|++||.+.
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhh
Confidence            99999863221   2577899999999865

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=1.3e-07  Score=74.27  Aligned_cols=107  Identities=18%  Similarity=0.261  Sum_probs=68.6

Q ss_pred             CeeEEEeecCCCCc-ccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccCcCCCEE
Q 038525           58 GWYHIELVECSIKG-ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKILLLQNL  130 (165)
Q Consensus        58 ~L~~L~ls~n~l~~-~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l~~L~~L  130 (165)
                      .++.|.++.|.++- .+ -.....+++|+.|+|.+|..-+..-....-+..|+.|||++|++.      ..+.++.|+.|
T Consensus       198 ~lK~L~l~~CGls~k~V-~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDV-QWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhheEEeccCCCCHHHH-HHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            34566666666652 11 222345677778888877422232333344677888888888765      56677888888


Q ss_pred             eccCCCCCC-ccccc-----ccCCCCCcEEEccCCccCccC
Q 038525          131 DLSHNNLSD-SQFRF-----VIPYLRLSVQCVWTCHSTIWK  165 (165)
Q Consensus       131 ~ls~N~l~~-~~p~~-----~~~l~~L~~L~l~~n~~~~~~  165 (165)
                      +++.+.+.. ..|+.     ....++|++|++..|+.-.|+
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~  317 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR  317 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence            888888764 22333     345678888888888876674

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.33  E-value=1.6e-07  Score=74.93  Aligned_cols=100  Identities=22%  Similarity=0.308  Sum_probs=83.0

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSH  134 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~  134 (165)
                      .++.+.+..|.+.. + -..+..+++|+.+++.+|.|. .+...+..+++|++|++++|.|+   .+..++.|+.|++++
T Consensus        73 ~l~~l~l~~n~i~~-~-~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-I-LNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSG  149 (414)
T ss_pred             hHHhhccchhhhhh-h-hcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccchhhccchhhheecc
Confidence            45577788888873 3 345888999999999999999 45544778999999999999998   677788899999999


Q ss_pred             CCCCCcccccccCCCCCcEEEccCCccC
Q 038525          135 NNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       135 N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      |.++. + +.+..+..|+.+++++|++.
T Consensus       150 N~i~~-~-~~~~~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  150 NLISD-I-SGLESLKSLKLLDLSYNRIV  175 (414)
T ss_pred             Ccchh-c-cCCccchhhhcccCCcchhh
Confidence            99983 3 46777999999999999863

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.28  E-value=3.9e-07  Score=78.68  Aligned_cols=97  Identities=23%  Similarity=0.320  Sum_probs=53.2

Q ss_pred             eeEEEeecCC--CCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcCCCEEec
Q 038525           59 WYHIELVECS--IKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDL  132 (165)
Q Consensus        59 L~~L~ls~n~--l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~l  132 (165)
                      +++|-+..|.  +. .+++..|..++.|++||+++|.=-+.+|..++.+.+|++|++++..++    .++++..|.+|++
T Consensus       547 L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl  625 (889)
T KOG4658|consen  547 LRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNL  625 (889)
T ss_pred             cceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecc
Confidence            4455555554  22 221333555666666666655444456666666666666666666555    4555556666666


Q ss_pred             cCCCCCCcccccccCCCCCcEEEc
Q 038525          133 SHNNLSDSQFRFVIPYLRLSVQCV  156 (165)
Q Consensus       133 s~N~l~~~~p~~~~~l~~L~~L~l  156 (165)
                      ..+.-...+|.....+.+|++|.+
T Consensus       626 ~~~~~l~~~~~i~~~L~~Lr~L~l  649 (889)
T KOG4658|consen  626 EVTGRLESIPGILLELQSLRVLRL  649 (889)
T ss_pred             ccccccccccchhhhcccccEEEe
Confidence            655544444555555666666655

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.19  E-value=6.8e-07  Score=77.23  Aligned_cols=109  Identities=24%  Similarity=0.288  Sum_probs=85.7

Q ss_pred             CCCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----
Q 038525           45 GQDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----  119 (165)
Q Consensus        45 ~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----  119 (165)
                      ..++.+.|..++ .|++||+++|.--+.+ |..++.+-+|++|++++..++ .+|..++.+..|.+|++..+.-.     
T Consensus       560 ~~is~~ff~~m~-~LrVLDLs~~~~l~~L-P~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~  636 (889)
T KOG4658|consen  560 LEISGEFFRSLP-LLRVLDLSGNSSLSKL-PSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG  636 (889)
T ss_pred             hhcCHHHHhhCc-ceEEEECCCCCccCcC-ChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc
Confidence            446777799999 9999999998877789 999999999999999999999 99999999999999999987643     


Q ss_pred             CCccCcCCCEEeccCCCC--CCcccccccCCCCCcEEEc
Q 038525          120 EIGKILLLQNLDLSHNNL--SDSQFRFVIPYLRLSVQCV  156 (165)
Q Consensus       120 ~~~~l~~L~~L~ls~N~l--~~~~p~~~~~l~~L~~L~l  156 (165)
                      ....+++|++|.+..-..  ....-..+..+.+|+.+..
T Consensus       637 i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  637 ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            344588999998865432  2222234455556655554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.16  E-value=3.7e-08  Score=81.79  Aligned_cols=96  Identities=20%  Similarity=0.160  Sum_probs=78.2

Q ss_pred             eeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEecc
Q 038525           59 WYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLS  133 (165)
Q Consensus        59 L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls  133 (165)
                      |...+.++|.+. .. ..++.-++.++.|+|++|+++ ... .+..+++|++||+++|.++     ...++. |+.|.+.
T Consensus       166 L~~a~fsyN~L~-~m-D~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LM-DESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHH-hH-HHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            557788888887 56 667778899999999999998 333 7888999999999999998     233344 9999999


Q ss_pred             CCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          134 HNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       134 ~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      +|.++. + ..+.++.+|+.||++.|-.
T Consensus       241 nN~l~t-L-~gie~LksL~~LDlsyNll  266 (1096)
T KOG1859|consen  241 NNALTT-L-RGIENLKSLYGLDLSYNLL  266 (1096)
T ss_pred             ccHHHh-h-hhHHhhhhhhccchhHhhh
Confidence            999973 3 4688999999999999854

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=2.5e-07  Score=72.80  Aligned_cols=109  Identities=18%  Similarity=0.031  Sum_probs=58.6

Q ss_pred             hhccccCeeEEEeecCCCCcccC-CcccCCCCCCcEEEcccCcCCCCCCcCc-CCCCCCCEEEcCCCCCC------CCcc
Q 038525           52 FRSLQLGWYHIELVECSIKGELG-SLNFSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLT------EIGK  123 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p~~~-~~l~~L~~L~ls~n~l~------~~~~  123 (165)
                      .+.++ +++.||++.|-+....+ -.....+++|+.|.++.|.+.-...... ..+++++.|.++.|.++      ....
T Consensus       142 ~k~~~-~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  142 SKILP-NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhCC-cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            34455 67788888876653220 2223457778888888887763332222 24567777777777776      2234


Q ss_pred             CcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          124 ILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       124 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      +|+++.|++..|...........-+..|+.|+|++|..
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l  258 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL  258 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence            45555555555532112222233344455555555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.11  E-value=6.1e-08  Score=65.40  Aligned_cols=83  Identities=27%  Similarity=0.389  Sum_probs=64.4

Q ss_pred             CeeEEEeecCCCCcccCCcccC-CCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcCCCEEec
Q 038525           58 GWYHIELVECSIKGELGSLNFS-CFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDL  132 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~-~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~l  132 (165)
                      .++..++++|.+. .+ |..|. .++..+.+++++|+++ .+|.++..++.|+.++++.|.+.    .+..+.++..|+.
T Consensus        54 el~~i~ls~N~fk-~f-p~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KF-PKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhh-hC-CHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence            4667889999888 56 55554 4568888999999998 78888888999999999999887    4445778888888


Q ss_pred             cCCCCCCccccc
Q 038525          133 SHNNLSDSQFRF  144 (165)
Q Consensus       133 s~N~l~~~~p~~  144 (165)
                      .+|.+. .+|..
T Consensus       131 ~~na~~-eid~d  141 (177)
T KOG4579|consen  131 PENARA-EIDVD  141 (177)
T ss_pred             CCCccc-cCcHH
Confidence            888876 55544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.96  E-value=2.8e-07  Score=62.30  Aligned_cols=97  Identities=21%  Similarity=0.309  Sum_probs=57.4

Q ss_pred             EEEeecCCCCcccC--CcccCCCCCCcEEEcccCcCCCCCCcCcCC-CCCCCEEEcCCCCCC----CCccCcCCCEEecc
Q 038525           61 HIELVECSIKGELG--SLNFSCFSNLQYINLWNNDLSGSIPPQIGS-LLKLKYLNLRWKNLT----EIGKILLLQNLDLS  133 (165)
Q Consensus        61 ~L~ls~n~l~~~~~--p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~-l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls  133 (165)
                      .++|+++++- .++  +..+.....|+..++++|.+. .+|+.|.. .+.++.+++++|.++    .+..++.|+.++++
T Consensus        31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR  108 (177)
T ss_pred             hcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence            5566666543 220  223344455666667777766 55555543 346666777777666    55666667777777


Q ss_pred             CCCCCCcccccccCCCCCcEEEccCCc
Q 038525          134 HNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       134 ~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      .|.+. ..|+.+..+.+|..|+..+|.
T Consensus       109 ~N~l~-~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen  109 FNPLN-AEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             cCccc-cchHHHHHHHhHHHhcCCCCc
Confidence            77766 456666666666666665553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.82  E-value=6.8e-06  Score=60.76  Aligned_cols=94  Identities=18%  Similarity=0.236  Sum_probs=58.3

Q ss_pred             eeEEEeecCCCCcccCCcccCCCCCCcEEEcccC--cCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccCcCCCEE
Q 038525           59 WYHIELVECSIKGELGSLNFSCFSNLQYINLWNN--DLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKILLLQNL  130 (165)
Q Consensus        59 L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N--~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l~~L~~L  130 (165)
                      ++.+.+.+..++.   -..|..+++|++|++|.|  ++.+.++.....+++|+++++++|+++      ....+.+|..|
T Consensus        45 le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   45 LELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             hhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence            4466666666652   235677778888888888  555555555555677888888888776      34455667777


Q ss_pred             eccCCCCCCccc---ccccCCCCCcEEE
Q 038525          131 DLSHNNLSDSQF---RFVIPYLRLSVQC  155 (165)
Q Consensus       131 ~ls~N~l~~~~p---~~~~~l~~L~~L~  155 (165)
                      ++.+|..+..--   ..|.-+++|++|+
T Consensus       122 dl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  122 DLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hcccCCccccccHHHHHHHHhhhhcccc
Confidence            777776553111   1344455666655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.78  E-value=1.8e-05  Score=60.89  Aligned_cols=110  Identities=18%  Similarity=0.182  Sum_probs=77.3

Q ss_pred             hhhhccccCeeEEEeecCCCCcc----cCCcccCCCCCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEcCCCCCC--
Q 038525           50 QCFRSLQLGWYHIELVECSIKGE----LGSLNFSCFSNLQYINLWNNDLSGS----IPPQIGSLLKLKYLNLRWKNLT--  119 (165)
Q Consensus        50 ~~~~~l~~~L~~L~ls~n~l~~~----~~p~~~~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~ls~n~l~--  119 (165)
                      ..|+..+ .++++.+..|.+...    + ...|..+++|++||+.+|.++..    +...+..+++|+.++++++.+.  
T Consensus       179 ~~~~~~~-~leevr~~qN~I~~eG~~al-~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~  256 (382)
T KOG1909|consen  179 EAFQSHP-TLEEVRLSQNGIRPEGVTAL-AEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE  256 (382)
T ss_pred             HHHHhcc-ccceEEEecccccCchhHHH-HHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc
Confidence            3455555 788888888887521    1 23467788899999999888732    2345667888888888888887  


Q ss_pred             -------CC-ccCcCCCEEeccCCCCCCc----ccccccCCCCCcEEEccCCcc
Q 038525          120 -------EI-GKILLLQNLDLSHNNLSDS----QFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       120 -------~~-~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~l~~n~~  161 (165)
                             .+ ...++|+.+.+.+|.++..    +...+...+.|..|++++|+.
T Consensus       257 Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  257 GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence                   11 2467888898898888632    223455677888888888875

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.78  E-value=1.8e-05  Score=66.95  Aligned_cols=108  Identities=16%  Similarity=0.203  Sum_probs=76.7

Q ss_pred             hhhhhccccCeeEEEeecCCCCc-ccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CC
Q 038525           49 SQCFRSLQLGWYHIELVECSIKG-ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EI  121 (165)
Q Consensus        49 ~~~~~~l~~~L~~L~ls~n~l~~-~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~  121 (165)
                      ......+| +|+.|.+++-.+.. .+ ..-..++++|+.||+|+.+++ .+ ..++.+++|+.|.+.+=.+.      .+
T Consensus       141 ~kig~~LP-sL~sL~i~~~~~~~~dF-~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L  216 (699)
T KOG3665|consen  141 KKIGTMLP-SLRSLVISGRQFDNDDF-SQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDL  216 (699)
T ss_pred             HHHhhhCc-ccceEEecCceecchhH-HHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHH
Confidence            34445567 88899888876642 22 334567889999999999888 33 56788888888888776665      66


Q ss_pred             ccCcCCCEEeccCCCCCCcc--c----ccccCCCCCcEEEccCCc
Q 038525          122 GKILLLQNLDLSHNNLSDSQ--F----RFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       122 ~~l~~L~~L~ls~N~l~~~~--p----~~~~~l~~L~~L~l~~n~  160 (165)
                      .++++|+.||+|........  .    +.-..++.|++||.++..
T Consensus       217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence            78899999999887654211  1    233457899999988764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.71  E-value=4.7e-05  Score=54.65  Aligned_cols=82  Identities=22%  Similarity=0.221  Sum_probs=65.3

Q ss_pred             hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCC--cCcCCCCCCCEEEcCCCCCC--------C
Q 038525           51 CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIP--PQIGSLLKLKYLNLRWKNLT--------E  120 (165)
Q Consensus        51 ~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p--~~~~~l~~L~~L~ls~n~l~--------~  120 (165)
                      .|..++ +|.+|.+++|.++ .++|.--..+++|..|.+.+|+|. .+.  +.+..++.|++|.+-+|+.+        -
T Consensus        59 ~lp~l~-rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yv  135 (233)
T KOG1644|consen   59 NLPHLP-RLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYV  135 (233)
T ss_pred             cCCCcc-ccceEEecCCcce-eeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEE
Confidence            366677 8999999999999 442655556778999999999987 333  23567889999999999987        5


Q ss_pred             CccCcCCCEEeccCC
Q 038525          121 IGKILLLQNLDLSHN  135 (165)
Q Consensus       121 ~~~l~~L~~L~ls~N  135 (165)
                      +..+++|+.||.+.=
T Consensus       136 l~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  136 LYKLPSLRTLDFQKV  150 (233)
T ss_pred             EEecCcceEeehhhh
Confidence            778999999998654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.54  E-value=1.9e-05  Score=60.76  Aligned_cols=77  Identities=17%  Similarity=0.148  Sum_probs=37.5

Q ss_pred             CCCcEEEcccCcCCCCCC-----cCcCCCCCCCEEEcCCCCCC---------CCccCcCCCEEeccCCCCCC----cccc
Q 038525           82 SNLQYINLWNNDLSGSIP-----PQIGSLLKLKYLNLRWKNLT---------EIGKILLLQNLDLSHNNLSD----SQFR  143 (165)
Q Consensus        82 ~~L~~L~ls~N~l~~~~p-----~~~~~l~~L~~L~ls~n~l~---------~~~~l~~L~~L~ls~N~l~~----~~p~  143 (165)
                      +.|+++..++|++. ..+     ..|...+.|+.+.++.|.|.         .+..++.|+.|||.+|.++.    .+..
T Consensus       157 ~~Lrv~i~~rNrle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  157 PKLRVFICGRNRLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             cceEEEEeeccccc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            44555555555543 111     12333445555555555544         34455566666666665532    1223


Q ss_pred             cccCCCCCcEEEccCC
Q 038525          144 FVIPYLRLSVQCVWTC  159 (165)
Q Consensus       144 ~~~~l~~L~~L~l~~n  159 (165)
                      .+..+++|+.+++++|
T Consensus       236 aL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDC  251 (382)
T ss_pred             Hhcccchheeeccccc
Confidence            4455555666665555

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.36  E-value=0.00076  Score=53.76  Aligned_cols=32  Identities=13%  Similarity=0.200  Sum_probs=14.7

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNN   92 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N   92 (165)
                      +|++|.++++.--..+ |..+.  ++|++|++++|
T Consensus        73 sLtsL~Lsnc~nLtsL-P~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         73 ELTEITIENCNNLTTL-PGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             CCcEEEccCCCCcccC-Cchhh--hhhhheEccCc
Confidence            4555555553222233 43331  35556666555

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.23  E-value=0.0017  Score=51.77  Aligned_cols=28  Identities=14%  Similarity=0.378  Sum_probs=14.3

Q ss_pred             CeeEEEeecC-CCCcccCCcccCCCCCCcEEEcccCc
Q 038525           58 GWYHIELVEC-SIKGELGSLNFSCFSNLQYINLWNND   93 (165)
Q Consensus        58 ~L~~L~ls~n-~l~~~~~p~~~~~l~~L~~L~ls~N~   93 (165)
                      +|++|++++| .+. .+ |.      +|+.|+++.+.
T Consensus        95 nLe~L~Ls~Cs~L~-sL-P~------sLe~L~L~~n~  123 (426)
T PRK15386         95 GLEKLTVCHCPEIS-GL-PE------SVRSLEIKGSA  123 (426)
T ss_pred             hhhheEccCccccc-cc-cc------ccceEEeCCCC
Confidence            4556666666 333 34 32      34555555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.19  E-value=0.0017  Score=42.91  Aligned_cols=95  Identities=18%  Similarity=0.124  Sum_probs=35.8

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcCCCEEecc
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLS  133 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls  133 (165)
                      +++.+.+.. .+...- ...|.++++|+.+.+.++ +...-...|..+..++.+.+..+...    .|..+++++.+++.
T Consensus        13 ~l~~i~~~~-~~~~I~-~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   13 NLESITFPN-TIKKIG-ENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             T--EEEETS-T--EE--TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEEET
T ss_pred             CCCEEEECC-CeeEeC-hhhccccccccccccccc-ccccceeeeecccccccccccccccccccccccccccccccccC
Confidence            444555543 333222 445555555555555553 33222334445545555555442111    44455555555554


Q ss_pred             CCCCCCcccccccCCCCCcEEEcc
Q 038525          134 HNNLSDSQFRFVIPYLRLSVQCVW  157 (165)
Q Consensus       134 ~N~l~~~~p~~~~~l~~L~~L~l~  157 (165)
                      .+ +...-...|.+. .|+.+.+.
T Consensus        90 ~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   90 SN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             TT--BEEHTTTTTT--T--EEE-T
T ss_pred             cc-ccEEchhhhcCC-CceEEEEC
Confidence            43 332223344443 55555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=9.8e-06  Score=60.91  Aligned_cols=93  Identities=16%  Similarity=0.116  Sum_probs=53.9

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccCcCCCEEe
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKILLLQNLD  131 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l~~L~~L~  131 (165)
                      +++.|+..++.+.. +  .....++.|++|.||-|.|+..-  .+..+++|+.|.|..|.|.      -+.++++|+.|+
T Consensus        20 ~vkKLNcwg~~L~D-I--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDD-I--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCccH-H--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            34456666666552 2  13345666666666666666322  2455666666666666665      345667777777


Q ss_pred             ccCCCCCCcccc-----cccCCCCCcEEE
Q 038525          132 LSHNNLSDSQFR-----FVIPYLRLSVQC  155 (165)
Q Consensus       132 ls~N~l~~~~p~-----~~~~l~~L~~L~  155 (165)
                      |..|...|.-+.     .+.-+++|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            777776655443     234455665554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.17  E-value=7.8e-05  Score=56.71  Aligned_cols=80  Identities=24%  Similarity=0.266  Sum_probs=60.2

Q ss_pred             CeeEEEeecCCCCc--ccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccCcCCCE
Q 038525           58 GWYHIELVECSIKG--ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKILLLQN  129 (165)
Q Consensus        58 ~L~~L~ls~n~l~~--~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l~~L~~  129 (165)
                      .++++|+..|.++.  ++ ...+..++.|+.|+++.|.+...+...-....+|+++.+.+..+.      .+..++.++.
T Consensus        72 ~v~elDL~~N~iSdWseI-~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEI-GAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhcccchhccHHHH-HHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            67799999999874  23 344578899999999999998444322245678999999888776      5667888888


Q ss_pred             EeccCCCCC
Q 038525          130 LDLSHNNLS  138 (165)
Q Consensus       130 L~ls~N~l~  138 (165)
                      |++|.|++.
T Consensus       151 lHmS~N~~r  159 (418)
T KOG2982|consen  151 LHMSDNSLR  159 (418)
T ss_pred             hhhccchhh
Confidence            888888543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.14  E-value=0.0001  Score=62.57  Aligned_cols=103  Identities=12%  Similarity=0.189  Sum_probs=75.2

Q ss_pred             CeeEEEeecCCCCc-ccCCccc-CCCCCCcEEEcccCcCCC-CCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEe
Q 038525           58 GWYHIELVECSIKG-ELGSLNF-SCFSNLQYINLWNNDLSG-SIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLD  131 (165)
Q Consensus        58 ~L~~L~ls~n~l~~-~~~p~~~-~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~  131 (165)
                      +|++|++++..... .. |..+ ..+|.|+.|.+++=.+.. .+-....++++|..||+|+..++   .++.+++|+.|.
T Consensus       123 nL~~LdI~G~~~~s~~W-~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGW-PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             hhhhcCccccchhhccH-HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            57899998866431 22 3333 357999999999877642 22344567899999999999998   778888898888


Q ss_pred             ccCCCCCC-cccccccCCCCCcEEEccCCcc
Q 038525          132 LSHNNLSD-SQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       132 ls~N~l~~-~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      +.+=.+.. ..-..+.++++|++||+|..+.
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence            87766652 1123677899999999998654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.98  E-value=0.00023  Score=32.60  Aligned_cols=19  Identities=42%  Similarity=0.822  Sum_probs=9.8

Q ss_pred             CcEEEcccCcCCCCCCcCcC
Q 038525           84 LQYINLWNNDLSGSIPPQIG  103 (165)
Q Consensus        84 L~~L~ls~N~l~~~~p~~~~  103 (165)
                      |++||+++|+++ .+|+.|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.87  E-value=0.0038  Score=41.24  Aligned_cols=100  Identities=14%  Similarity=0.166  Sum_probs=56.2

Q ss_pred             CCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----C
Q 038525           46 QDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----E  120 (165)
Q Consensus        46 ~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~  120 (165)
                      .+....|...+ +++.+.+.++ +...- ...|..++.++.+.+.. .+.......|..+.+++.+++..+ ++     .
T Consensus        25 ~I~~~~F~~~~-~l~~i~~~~~-~~~i~-~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~   99 (129)
T PF13306_consen   25 KIGENAFSNCT-SLKSINFPNN-LTSIG-DNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSS   99 (129)
T ss_dssp             EE-TTTTTT-T-T-SEEEESST-TSCE--TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTT
T ss_pred             EeChhhccccc-cccccccccc-ccccc-eeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhh
Confidence            34566688877 7889999886 66343 67889998999999976 444244556777999999999876 44     7


Q ss_pred             CccCcCCCEEeccCCCCCCcccccccCCCCCc
Q 038525          121 IGKILLLQNLDLSHNNLSDSQFRFVIPYLRLS  152 (165)
Q Consensus       121 ~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~  152 (165)
                      |.+. .++.+.+.. .+.......|.++++|+
T Consensus       100 f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen  100 FSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             TTT--T--EEE-TT-B-SS----GGG------
T ss_pred             hcCC-CceEEEECC-CccEECCccccccccCC
Confidence            7777 899998876 44435556777776663

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.83  E-value=0.00097  Score=49.56  Aligned_cols=84  Identities=23%  Similarity=0.222  Sum_probs=59.8

Q ss_pred             CcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-------CCccCcCCCEEeccCCCCCCcccccc--
Q 038525           75 SLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-------EIGKILLLQNLDLSHNNLSDSQFRFV--  145 (165)
Q Consensus        75 p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-------~~~~l~~L~~L~ls~N~l~~~~p~~~--  145 (165)
                      ..-...+..|+.+.+.+-.++ .+ ..+-.+++|+.|.++.|.+.       ....+++|+++++++|++.  +++++  
T Consensus        36 ~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~p  111 (260)
T KOG2739|consen   36 GGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRP  111 (260)
T ss_pred             ccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccch
Confidence            444556677888887777776 22 24556889999999999544       2345599999999999996  24444  


Q ss_pred             -cCCCCCcEEEccCCccC
Q 038525          146 -IPYLRLSVQCVWTCHST  162 (165)
Q Consensus       146 -~~l~~L~~L~l~~n~~~  162 (165)
                       ..+.+|..|++.+|..+
T Consensus       112 l~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhhhcchhhhhcccCCcc
Confidence             44557778888887653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.73  E-value=0.00063  Score=31.07  Aligned_cols=22  Identities=41%  Similarity=0.286  Sum_probs=17.0

Q ss_pred             CCCEEeccCCCCCCcccccccCC
Q 038525          126 LLQNLDLSHNNLSDSQFRFVIPY  148 (165)
Q Consensus       126 ~L~~L~ls~N~l~~~~p~~~~~l  148 (165)
                      +|++||+++|+++ .+|+.|.++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4788999999998 788777653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.58  E-value=0.0014  Score=50.04  Aligned_cols=81  Identities=19%  Similarity=0.199  Sum_probs=54.5

Q ss_pred             ccccccccccCCCc-----hhhhhccccCeeEEEeecCCCCcccCCccc-CCCCCCcEEEcccCcCCCCCCc-CcCCCCC
Q 038525           35 TSFTQQRLVEGQDS-----SQCFRSLQLGWYHIELVECSIKGELGSLNF-SCFSNLQYINLWNNDLSGSIPP-QIGSLLK  107 (165)
Q Consensus        35 ~~l~~~~~~~~~~~-----~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p~-~~~~l~~  107 (165)
                      +.++..++..+.+.     ...++++| .++.|+++.|+++..+ . .. ....+|+.|-|.+..+...--+ ....++.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP-~l~~LNls~N~L~s~I-~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLP-ALTTLNLSCNSLSSDI-K-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCc-cceEeeccCCcCCCcc-c-cCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            33444444444443     33467888 8999999999998544 2 22 4567899999988887644333 3456778


Q ss_pred             CCEEEcCCCCC
Q 038525          108 LKYLNLRWKNL  118 (165)
Q Consensus       108 L~~L~ls~n~l  118 (165)
                      ++.|.++.|.+
T Consensus       148 vtelHmS~N~~  158 (418)
T KOG2982|consen  148 VTELHMSDNSL  158 (418)
T ss_pred             hhhhhhccchh
Confidence            88888888744

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.55  E-value=0.0026  Score=48.08  Aligned_cols=37  Identities=19%  Similarity=0.103  Sum_probs=17.5

Q ss_pred             cCcCCCEEeccCCCCCC----cccccccCCCCCcEEEccCC
Q 038525          123 KILLLQNLDLSHNNLSD----SQFRFVIPYLRLSVQCVWTC  159 (165)
Q Consensus       123 ~l~~L~~L~ls~N~l~~----~~p~~~~~l~~L~~L~l~~n  159 (165)
                      .+.+|+.||+.+|-++-    .+...+..++.|+.|.+.+|
T Consensus       212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC  252 (388)
T COG5238         212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC  252 (388)
T ss_pred             HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence            34455555555555531    11223444555555555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.40  E-value=0.00023  Score=54.25  Aligned_cols=39  Identities=21%  Similarity=0.270  Sum_probs=23.3

Q ss_pred             cCcCCCEEeccCCCC-CCcccccccCCCCCcEEEccCCcc
Q 038525          123 KILLLQNLDLSHNNL-SDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       123 ~l~~L~~L~ls~N~l-~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      .+++|.+|||++|.. +...-..|.+++.|++|.++.|+-
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~  350 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD  350 (419)
T ss_pred             hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence            466777777776542 322334556666777777776653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.87  E-value=0.0051  Score=26.17  Aligned_cols=13  Identities=46%  Similarity=0.664  Sum_probs=5.0

Q ss_pred             CCcEEEcccCcCC
Q 038525           83 NLQYINLWNNDLS   95 (165)
Q Consensus        83 ~L~~L~ls~N~l~   95 (165)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3455555555544

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.49  E-value=0.00035  Score=52.79  Aligned_cols=77  Identities=17%  Similarity=0.211  Sum_probs=61.4

Q ss_pred             CCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccCCCCCCcccc--cccCCCCCcEEE
Q 038525           81 FSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSHNNLSDSQFR--FVIPYLRLSVQC  155 (165)
Q Consensus        81 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~--~~~~l~~L~~L~  155 (165)
                      +.+.++|+.-++.++.+  .-...|+.|++|.|+-|+|+   .+..|++|+.|.|..|.|. .+.+  -+.++++|+.|+
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence            44567777878877732  23457999999999999998   7889999999999999997 4443  357889999999


Q ss_pred             ccCCc
Q 038525          156 VWTCH  160 (165)
Q Consensus       156 l~~n~  160 (165)
                      |..|.
T Consensus        95 L~ENP   99 (388)
T KOG2123|consen   95 LDENP   99 (388)
T ss_pred             hccCC
Confidence            98874

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.40  E-value=0.025  Score=42.91  Aligned_cols=103  Identities=17%  Similarity=0.102  Sum_probs=68.2

Q ss_pred             cccCeeEEEeecCCCCcccCCcc----cCCCCCCcEEEcccCcCCCCCCcCc-------------CCCCCCCEEEcCCCC
Q 038525           55 LQLGWYHIELVECSIKGELGSLN----FSCFSNLQYINLWNNDLSGSIPPQI-------------GSLLKLKYLNLRWKN  117 (165)
Q Consensus        55 l~~~L~~L~ls~n~l~~~~~p~~----~~~l~~L~~L~ls~N~l~~~~p~~~-------------~~l~~L~~L~ls~n~  117 (165)
                      .| +++..++|.|.+.... |..    ++.-+.|+.|.+++|.+..+-...+             ..-+.|++.+...|+
T Consensus        91 cp-~l~~v~LSDNAfg~~~-~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          91 CP-RLQKVDLSDNAFGSEF-PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             CC-cceeeeccccccCccc-chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            34 6778888888887665 443    3455778888888887762222222             234678888888888


Q ss_pred             CC---------CCccCcCCCEEeccCCCCCCcccc--------cccCCCCCcEEEccCCccC
Q 038525          118 LT---------EIGKILLLQNLDLSHNNLSDSQFR--------FVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       118 l~---------~~~~l~~L~~L~ls~N~l~~~~p~--------~~~~l~~L~~L~l~~n~~~  162 (165)
                      +.         .+..-..|..+.+..|.|.   |+        .+..+.+|++|++++|-.+
T Consensus       169 lengs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         169 LENGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             hccCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchh
Confidence            76         2333356788888888765   33        2345678888888888653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.23  E-value=0.016  Score=27.24  Aligned_cols=20  Identities=50%  Similarity=0.810  Sum_probs=13.9

Q ss_pred             CCCCcEEEcccCcCCCCCCcC
Q 038525           81 FSNLQYINLWNNDLSGSIPPQ  101 (165)
Q Consensus        81 l~~L~~L~ls~N~l~~~~p~~  101 (165)
                      +++|+.|++++|+++ .+|..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            457788888888887 55543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.23  E-value=0.016  Score=27.24  Aligned_cols=20  Identities=50%  Similarity=0.810  Sum_probs=13.9

Q ss_pred             CCCCcEEEcccCcCCCCCCcC
Q 038525           81 FSNLQYINLWNNDLSGSIPPQ  101 (165)
Q Consensus        81 l~~L~~L~ls~N~l~~~~p~~  101 (165)
                      +++|+.|++++|+++ .+|..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            457788888888887 55543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.74  E-value=0.0004  Score=51.22  Aligned_cols=78  Identities=14%  Similarity=0.104  Sum_probs=52.4

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcCCCEEecc
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLS  133 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls  133 (165)
                      ..+.||++.|++. -+ ...|..++.+..||++.|++. ..|..+++...+..+++..|..+    +++..+.++++++-
T Consensus        43 r~tvld~~s~r~v-n~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHH-hh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence            3557777777765 34 556677777777777777777 67777777666666666666555    56666666666666


Q ss_pred             CCCCC
Q 038525          134 HNNLS  138 (165)
Q Consensus       134 ~N~l~  138 (165)
                      .|.+.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            66543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.19  E-value=0.00069  Score=50.02  Aligned_cols=64  Identities=16%  Similarity=0.046  Sum_probs=46.2

Q ss_pred             hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC
Q 038525           52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT  119 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~  119 (165)
                      |+.++ .+..|+++.|++. .. |.+++....++.+++..|..+ ..|.+++..+++++++..+|.+.
T Consensus        61 ~s~~t-~~~rl~~sknq~~-~~-~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   61 FSILT-RLVRLDLSKNQIK-FL-PKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             hHHHH-HHHHHhccHhhHh-hC-hhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence            44444 5667777777776 55 777777777777777777777 67777777777777777777766

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.95  E-value=0.051  Score=25.46  Aligned_cols=20  Identities=45%  Similarity=0.358  Sum_probs=14.5

Q ss_pred             CcCCCEEeccCCCCCCccccc
Q 038525          124 ILLLQNLDLSHNNLSDSQFRF  144 (165)
Q Consensus       124 l~~L~~L~ls~N~l~~~~p~~  144 (165)
                      +++|+.|++++|+++ .+|..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            467888888888888 44543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.95  E-value=0.051  Score=25.46  Aligned_cols=20  Identities=45%  Similarity=0.358  Sum_probs=14.5

Q ss_pred             CcCCCEEeccCCCCCCccccc
Q 038525          124 ILLLQNLDLSHNNLSDSQFRF  144 (165)
Q Consensus       124 l~~L~~L~ls~N~l~~~~p~~  144 (165)
                      +++|+.|++++|+++ .+|..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            467888888888888 44543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=91.35  E-value=0.021  Score=43.82  Aligned_cols=54  Identities=22%  Similarity=0.233  Sum_probs=34.9

Q ss_pred             CCCEEEcCCCCCC------CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525          107 KLKYLNLRWKNLT------EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       107 ~L~~L~ls~n~l~------~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      .++++|++...++      -+..+.+|+.|.+.++++...+-.++.+..+|+.|+++.+.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s  245 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS  245 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc
Confidence            4666777766666      34556666777777777666555666666667777666653

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=89.44  E-value=0.33  Score=22.98  Aligned_cols=14  Identities=29%  Similarity=0.522  Sum_probs=8.8

Q ss_pred             CCCcEEEcccCcCC
Q 038525           82 SNLQYINLWNNDLS   95 (165)
Q Consensus        82 ~~L~~L~ls~N~l~   95 (165)
                      ++|+.|+++.|.|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            45666666666665

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=88.91  E-value=0.3  Score=23.15  Aligned_cols=17  Identities=41%  Similarity=0.684  Sum_probs=11.7

Q ss_pred             CCcEEEcccCcCCCCCCc
Q 038525           83 NLQYINLWNNDLSGSIPP  100 (165)
Q Consensus        83 ~L~~L~ls~N~l~~~~p~  100 (165)
                      +|++|++++|+++ .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            5677777777777 5664

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.24  E-value=0.038  Score=39.94  Aligned_cols=75  Identities=19%  Similarity=0.119  Sum_probs=38.0

Q ss_pred             eeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCC-CCcCcC-CCCCCCEEEcCCCC-CC-----CCccCcCCCEE
Q 038525           59 WYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGS-IPPQIG-SLLKLKYLNLRWKN-LT-----EIGKILLLQNL  130 (165)
Q Consensus        59 L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~~~-~l~~L~~L~ls~n~-l~-----~~~~l~~L~~L  130 (165)
                      ++.+|.++..+..+- -..+.+++.++.|.+.++.--+. --+.++ -.++|+.|++++|. |+     -+..+++|+.|
T Consensus       103 IeaVDAsds~I~~eG-le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEG-LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             EEEEecCCchHHHHH-HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            566777776665443 34555666666666555432110 001111 23567777777663 55     34445555555


Q ss_pred             eccC
Q 038525          131 DLSH  134 (165)
Q Consensus       131 ~ls~  134 (165)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            5443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=87.28  E-value=0.26  Score=22.48  Aligned_cols=14  Identities=36%  Similarity=0.631  Sum_probs=6.4

Q ss_pred             CCCcEEEcccCcCC
Q 038525           82 SNLQYINLWNNDLS   95 (165)
Q Consensus        82 ~~L~~L~ls~N~l~   95 (165)
                      ++|++|++++|.|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34555555555544

...

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=85.74  E-value=0.69  Score=22.09  Aligned_cols=13  Identities=38%  Similarity=0.562  Sum_probs=7.6

Q ss_pred             CCcEEEcccCcCC
Q 038525           83 NLQYINLWNNDLS   95 (165)
Q Consensus        83 ~L~~L~ls~N~l~   95 (165)
                      +|++|||++|.+.
T Consensus         3 ~L~~LdL~~N~i~   15 (28)
T smart00368        3 SLRELDLSNNKLG   15 (28)
T ss_pred             ccCEEECCCCCCC
Confidence            4566666666554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=82.15  E-value=0.41  Score=38.46  Aligned_cols=56  Identities=27%  Similarity=0.269  Sum_probs=25.9

Q ss_pred             CCCCCEEEcCCCC-CC-----CCc-cCcCCCEEeccCCC-CCC-cccccccCCCCCcEEEccCCc
Q 038525          105 LLKLKYLNLRWKN-LT-----EIG-KILLLQNLDLSHNN-LSD-SQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       105 l~~L~~L~ls~n~-l~-----~~~-~l~~L~~L~ls~N~-l~~-~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      +++|+.+++++.. ++     .+. .+++|+.|.+.++. ++. .+-.....++.|+.|+++.|.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            4555566665555 33     111 24556666544444 221 111222345556666666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	165
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-04
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 69  IKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGK 123
           I  E+GS+ +     L  +NL +ND+SGSIP ++G L  L  L+L    L       +  
Sbjct: 645 IPKEIGSMPY-----LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 699
Query: 124 ILLLQNLDLSHNNLS 138
           + +L  +DLS+NNLS
Sbjct: 700 LTMLTEIDLSNNNLS 714

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 69  IKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGK 123
           I  E+GS+ +     L  +NL +ND+SGSIP ++G L  L  L+L    L       +  
Sbjct: 648 IPKEIGSMPY-----LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702
Query: 124 ILLLQNLDLSHNNLS 138
           + +L  +DLS+NNLS
Sbjct: 703 LTMLTEIDLSNNNLS 717

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	165
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	9e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 66.4 bits (163), Expect = 9e-14
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 68  SIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGK 123
            I     +LN      L +++L  N L G      GS    + ++L   +L     ++G 
Sbjct: 189 KIPPTFANLN------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242

Query: 124 ILLLQNLDLSHNNLS 138
              L  LDL +N + 
Sbjct: 243 SKNLNGLDLRNNRIY 257

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 65.6 bits (161), Expect = 1e-13
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 68  SIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIG 122
           +I   L  +       L  ++   N LSG++PP I SL  L  +      ++       G
Sbjct: 116 AIPDFLSQI-----KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 123 KIL-LLQNLDLSHNNLS 138
               L  ++ +S N L+
Sbjct: 171 SFSKLFTSMTISRNRLT 187

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 64.5 bits (158), Expect = 3e-13
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 10/72 (13%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILL 126
            +  L     + L Y+ + + ++SG+IP  +  +  L  L+  +  L+      I  +  
Sbjct: 96  AIAKL-----TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 127 LQNLDLSHNNLS 138
           L  +    N +S
Sbjct: 151 LVGITFDGNRIS 162

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.2 bits (152), Expect = 3e-12
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 11/73 (15%)

Query: 72  ELGSLNFSCFSNLQYINLWN-NDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKIL 125
            L +L       L ++ +   N+L G IPP I  L +L YL +   N++      + +I 
Sbjct: 71  SLANL-----PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125

Query: 126 LLQNLDLSHNNLS 138
            L  LD S+N LS
Sbjct: 126 TLVTLDFSYNALS 138

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 58.3 bits (142), Expect = 6e-11
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL 132
            S       + +  N L+G IPP   + L L +++L    L        G     Q + L
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 133 SHNNLS 138
           + N+L+
Sbjct: 229 AKNSLA 234

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.1 bits (131), Expect = 2e-09
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 82  SNLQYINLWNNDLSGS--IPPQIGSLLKLKYLNLRWKNL------TEIGKILLLQNLDLS 133
             +  ++L   +L     IP  + +L  L +L +   N         I K+  L  L ++
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 134 HNNLS 138
           H N+S
Sbjct: 110 HTNVS 114

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.2 bits (126), Expect = 8e-09
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 61  HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT- 119
            I L + S+  +LG +  S   NL  ++L NN + G++P  +  L  L  LN+ + NL  
Sbjct: 225 KIHLAKNSLAFDLGKVGLS--KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 120 ---EIGKILLLQNLDLSHNN 136
              + G +        ++N 
Sbjct: 283 EIPQGGNLQRFDVSAYANNK 302

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL 132
           F    ++ ++++  N LSG IP +IGS+  L  LNL   +++     E+G +  L  LDL
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687

Query: 133 SHNNLS 138
           S N L 
Sbjct: 688 SSNKLD 693

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.2 bits (152), Expect = 4e-12
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 52  FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYL 111
            +SLQ    ++ L E    GE+          L  ++L  N   G++PP  GS   L+ L
Sbjct: 268 LKSLQ----YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

Query: 112 NLRWKNLT------EIGKILLLQNLDLSHNNLSDS 140
            L   N +       + K+  L+ LDLS N  S  
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.8 bits (151), Expect = 5e-12
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 74  GSLNFSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLT-----EIGKILLL 127
           G +      +LQY++L  N  +G IP  + G+   L  L+L   +         G   LL
Sbjct: 261 GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320

Query: 128 QNLDLSHNNLSDS 140
           ++L LS NN S  
Sbjct: 321 ESLALSSNNFSGE 333

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 82  SNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSHNN 136
           S L  ++L  N LSG+IP  +GSL KL+ L L    L      E+  +  L+ L L  N+
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477

Query: 137 LS 138
           L+
Sbjct: 478 LT 479

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 81  FSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSHN 135
            S     N+ +    G   P   +   + +L++ +  L+     EIG +  L  L+L HN
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666

Query: 136 NLSDS 140
           ++S S
Sbjct: 667 DISGS 671

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.7 bits (148), Expect = 1e-11
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 10/78 (12%)

Query: 68  SIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIG 122
           +I   LGSL     S L+ + LW N L G IP ++  +  L+ L L + +LT      + 
Sbjct: 433 TIPSSLGSL-----SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487

Query: 123 KILLLQNLDLSHNNLSDS 140
               L  + LS+N L+  
Sbjct: 488 NCTNLNWISLSNNRLTGE 505

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.7 bits (148), Expect = 1e-11
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 82  SNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSHNN 136
           +NL +I+L NN L+G IP  IG L  L  L L   + +     E+G    L  LDL+ N 
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549

Query: 137 LS 138
            +
Sbjct: 550 FN 551

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.9 bits (146), Expect = 2e-11
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-EIGKILL--LQNLDLSH 134
               S LQ++++  N LSG     I +  +LK LN+        I  + L  LQ L L+ 
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE 278

Query: 135 NNLS 138
           N  +
Sbjct: 279 NKFT 282

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.9 bits (146), Expect = 2e-11
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 10/89 (11%)

Query: 61  HIELVECSIKGELGSLN--FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNL 118
            I+L    +     +++      + L+ + L N+ ++GS+         L  L+L   +L
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSL 112

Query: 119 T-------EIGKILLLQNLDLSHNNLSDS 140
           +        +G    L+ L++S N L   
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.5 bits (145), Expect = 4e-11
 Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 10/96 (10%)

Query: 49  SQCFRSLQLGWYHIELVECSIKGEL-GSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLK 107
           +    SL      ++L   +  G +  +L  +  + LQ + L NN  +G IPP + +  +
Sbjct: 364 TNLSASLL----TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419

Query: 108 LKYLNLRWKNLT-----EIGKILLLQNLDLSHNNLS 138
           L  L+L +  L+      +G +  L++L L  N L 
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.4 bits (142), Expect = 7e-11
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPP--QIGSLLKLKYLNLRWKNLTEIGKILL------LQ 128
            F C ++L  ++L  N LSG +     +GS   LK+LN+    L   GK+        L+
Sbjct: 95  GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154

Query: 129 NLDLSHNNLSDS 140
            LDLS N++S +
Sbjct: 155 VLDLSANSISGA 166

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 61  HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQI---GSLLKLKYLNLRWKN 117
            + +   ++            ++L+ ++L  N +SG+            +LK+L +    
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189

Query: 118 LT---EIGKILLLQNLDLSHNNLS 138
           ++   ++ + + L+ LD+S NN S
Sbjct: 190 ISGDVDVSRCVNLEFLDVSSNNFS 213

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.7 bits (135), Expect = 6e-10
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 61  HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLL-KLKYLNLRWKNLT 119
            + L   +  GEL          L+ ++L  N+ SG +P  + +L   L  L+L   N +
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381

Query: 120 -----EIGKILL--LQNLDLSHNNLS 138
                 + +     LQ L L +N  +
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFT 407

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 81  FSNLQYINLWNNDLSGSIPPQIGSL-LKLKYLNLRWKNLTEIGKILLLQNLDLSHNNLSD 139
             +L +++L  N  +G+IP  +     K+    +  K    I    + +    + N L  
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596

Query: 140 S 140
            
Sbjct: 597 Q 597

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 82  SNLQYINLWNNDLS---GSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLSH 134
             +  I+L +  L+    ++   + SL  L+ L L   ++            L +LDLS 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109

Query: 135 NNLSDS 140
           N+LS  
Sbjct: 110 NSLSGP 115

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 68  SIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-EIGKILL 126
           SI  E+G L       L  ++L +N L G IP  + +L  L  ++L   NL+  I ++  
Sbjct: 671 SIPDEVGDL-----RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725

Query: 127 LQNLDLS 133
            +    +
Sbjct: 726 FETFPPA 732

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 5/67 (7%), Positives = 18/67 (26%), Gaps = 8/67 (11%)

Query: 79  SCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNL-------TEIGKILLLQNLD 131
           +         +  N ++G     I +    K  +     L        ++ ++      +
Sbjct: 556 AAMFKQS-GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614

Query: 132 LSHNNLS 138
           ++     
Sbjct: 615 ITSRVYG 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.8 bits (135), Expect = 5e-10
 Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 76  LNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLR-------------WKNLTEIG 122
           L +    +L  + ++N      +P  + +L +++ +N+              W+ L +  
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAP 302

Query: 123 KILLLQNLDLSHNNLS 138
               +Q + + +NNL 
Sbjct: 303 VGEKIQIIYIGYNNLK 318

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 3/90 (3%)

Query: 68  SIKGELGSL-NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL 126
               +  +      F      +   N      P  I     L  L +   ++ ++ + + 
Sbjct: 527 KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT 586

Query: 127 --LQNLDLSHNNLSDSQFRFVIPYLRLSVQ 154
             +  LD+  N        +V PY+   + 
Sbjct: 587 PNISVLDIKDNPNISIDLSYVCPYIEAGMY 616

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 10/80 (12%)

Query: 82  SNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---------EIGKILLLQNLDL 132
             +  ++L     SG +P  IG L +L+ L L                I   +  +    
Sbjct: 81  GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 133 SHNNLSDSQFRFVIPYLRLS 152
              +   +   +  P    S
Sbjct: 141 MRMHYQKTFVDY-DPREDFS 159

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 68  SIKGELGSL-NFSCFSNLQYINLWNNDL-SGSIPPQIGSLLKLKYLNLRWKNLT----EI 121
            +K +  +L +      +Q I +  N+L +  +   +  + KL  L   +  L       
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF 349

Query: 122 GKILLLQNLDLSHNNLS 138
           G  + L +L+L++N ++
Sbjct: 350 GSEIKLASLNLAYNQIT 366

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 5/73 (6%), Positives = 20/73 (27%), Gaps = 5/73 (6%)

Query: 68  SIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLL 127
            +   +  L     + L+   + N+        +       +Y         +   +  L
Sbjct: 197 FVSKAVMRL-----TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL 251

Query: 128 QNLDLSHNNLSDS 140
            ++++ +      
Sbjct: 252 TDVEVYNCPNLTK 264

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 4/88 (4%)

Query: 69  IKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKI 124
            K  +       FS+L    + ++    SI       LK   +     N+T     + ++
Sbjct: 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRL 205

Query: 125 LLLQNLDLSHNNLSDSQFRFVIPYLRLS 152
             L+   + ++                 
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENSE 233

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 7e-08
 Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 12/76 (15%)

Query: 75  SLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNL-----------TEIGK 123
               +    L  I+L  N  S   P Q  +   LK   +R +               I  
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564

Query: 124 ILLLQNLDLSHNNLSD 139
              L  L +  N++  
Sbjct: 565 CPSLTQLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 7e-08
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 12/70 (17%)

Query: 81  FSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL------------LQ 128
             N+  INL NN +S        +   L  +NL    LTEI K  L            L 
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491

Query: 129 NLDLSHNNLS 138
           ++DL  N L+
Sbjct: 492 SIDLRFNKLT 501

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 10/76 (13%), Positives = 26/76 (34%), Gaps = 12/76 (15%)

Query: 75  SLNFSCFSNLQYINLWNNDLSG-------SIPPQIGSLLKLKYLNLRWKNLTEI-----G 122
             +    S +  I+   N++          + P     + +  +NL    +++       
Sbjct: 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454

Query: 123 KILLLQNLDLSHNNLS 138
               L +++L  N L+
Sbjct: 455 TGSPLSSINLMGNMLT 470

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 13/74 (17%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLK-LKYLNLRWKNLTEI------GKI 124
             GS        L  +NL  N ++  IP       + ++ L+     L  I        +
Sbjct: 348 AFGSE-----IKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV 401

Query: 125 LLLQNLDLSHNNLS 138
            ++  +D S+N + 
Sbjct: 402 SVMSAIDFSYNEIG 415

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 10/75 (13%), Positives = 28/75 (37%), Gaps = 15/75 (20%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPP--QIGSLLKLKYLNLRWKNLT------------EIGK 123
                 ++ ++  +N L   IP      S+  +  ++  +  +                K
Sbjct: 373 CGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 124 ILLLQNLDLSHNNLS 138
            + + +++LS+N +S
Sbjct: 432 GINVSSINLSNNQIS 446

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 9/97 (9%), Positives = 25/97 (25%), Gaps = 7/97 (7%)

Query: 61  HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSG----SIPPQIGSLLKLKYLNLRWK 116
            + L      G +        + L+ + L ++          P  I + +  +       
Sbjct: 85  GLSLEGFGASGRVPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRM 143

Query: 117 NLT--EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRL 151
           +     +         DL  + ++    +  I     
Sbjct: 144 HYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 13/74 (17%)

Query: 78  FSCFSNLQYINLWNNDLSG-------SIPPQIGSLLKLKYLNLRWKNLTEI------GKI 124
           FS  S L  INL  N L+               +   L  ++LR+  LT++        +
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512

Query: 125 LLLQNLDLSHNNLS 138
             L  +DLS+N+ S
Sbjct: 513 PYLVGIDLSYNSFS 526

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 19/81 (23%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDL--------SGSIPPQIGSLLKLKYLNLRWKNLTE--- 120
            L +L       +Q IN+  N                      K++ + + + NL     
Sbjct: 268 FLKAL-----PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV 322

Query: 121 ---IGKILLLQNLDLSHNNLS 138
              + K+  L  L+  +N L 
Sbjct: 323 ETSLQKMKKLGMLECLYNQLE 343

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 8/67 (11%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLR-----WKNLTEIGKILLLQNLDL 132
            +   +L  + + +ND+   +  +I     +  L+++       +L+ +   +      L
Sbjct: 562 ITLCPSLTQLQIGSNDIR-KVNEKITP--NISVLDIKDNPNISIDLSYVCPYIEAGMYML 618

Query: 133 SHNNLSD 139
            ++   D
Sbjct: 619 FYDKTQD 625

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 4e-09
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT--------------EIGK 123
           +S   +L  + L+N      +P  +  L +L+ LN+                    +   
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT 546

Query: 124 ILLLQNLDLSHNNLS 138
              +Q   + +NNL 
Sbjct: 547 GPKIQIFYMGYNNLE 561

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 8e-09
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 1/86 (1%)

Query: 67  CSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL 126
                + G  +      +  ++L      G +P  IG L +LK L+    + T  G++  
Sbjct: 309 DMWGDQPGV-DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFG 367

Query: 127 LQNLDLSHNNLSDSQFRFVIPYLRLS 152
            + L    +     + R     + L 
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLD 393

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 3e-08
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLK-LKYLNLRWKNLTEI------GKILLLQNL 130
           F     L  + L  N +   IP    +    ++ L      L  I        + ++ ++
Sbjct: 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSV 649

Query: 131 DLSHNNLS 138
           D S+N + 
Sbjct: 650 DFSYNKIG 657

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.6 bits (121), Expect = 4e-08
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 68  SIKGELGSL-NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL 126
           S   +  +      F      +   N +    P  I +   L  L +   ++ ++ + L 
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT 826

Query: 127 --LQNLDLSHNNLSDSQFRFVIPYLRLSV 153
             L  LD++ N         V PY+   +
Sbjct: 827 PQLYILDIADNPNISIDVTSVCPYIEAGM 855

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.6 bits (121), Expect = 4e-08
 Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 12/78 (15%)

Query: 73  LGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI----------- 121
             S++     N   + L  N++         +   +  + L    +T I           
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

Query: 122 -GKILLLQNLDLSHNNLS 138
                LL  +DL  N L+
Sbjct: 724 YKNTYLLTTIDLRFNKLT 741

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 6e-08
 Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 13/117 (11%)

Query: 30  SENRKTSFTQQRLVEGQ--DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYI 87
           + NR  S  Q +    +  D       +Q       +   +++    S +      L  +
Sbjct: 523 ACNRGISAAQLKADWTRLADDEDTGPKIQ----IFYMGYNNLEEFPASASLQKMVKLGLL 578

Query: 88  NLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-----LQNLDLSHNNLSD 139
           +  +N +        G+ +KL  L L +  + EI +        ++ L  SHN L  
Sbjct: 579 DCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY 633

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 13/75 (17%)

Query: 78  FSCFSNLQYINLWNNDLS-------GSIPPQIGSLLKLKYLNLRWKNLTEI------GKI 124
           F+  S +  I L NN ++               +   L  ++LR+  LT +        +
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL 752

Query: 125 LLLQNLDLSHNNLSD 139
             L N+D+S+N  S 
Sbjct: 753 PYLSNMDVSYNCFSS 767

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.9 bits (114), Expect = 3e-07
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 20/86 (23%)

Query: 68  SIKGELGSLNFSCFSNLQYINLWNNDLSG---------SIPPQIGSLLKLKYLNLRWKNL 118
            +   L  L       LQ +N+  N              +     +  K++   + + NL
Sbjct: 506 QLPDFLYDL-----PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

Query: 119 TEI------GKILLLQNLDLSHNNLS 138
            E        K++ L  LD  HN + 
Sbjct: 561 EEFPASASLQKMVKLGLLDCVHNKVR 586

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 4e-07
 Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 14/77 (18%)

Query: 75  SLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNL------------TEIG 122
               +    L  +++  N  S S P Q  +  +LK   +R                T I 
Sbjct: 746 DFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIR-HQRDAEGNRILRQWPTGIT 803

Query: 123 KILLLQNLDLSHNNLSD 139
               L  L +  N++  
Sbjct: 804 TCPSLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.8 bits (111), Expect = 8e-07
 Identities = 7/63 (11%), Positives = 15/63 (23%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNNL 137
               + LQ I   N+  +              Y             +  L +++L +   
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 138 SDS 140
              
Sbjct: 504 MTQ 506

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 5/63 (7%)

Query: 82  SNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSHNN 136
            + +  N        +      +L  L  + L            +  +  LQ+L+++ N 
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526

Query: 137 LSD 139
              
Sbjct: 527 GIS 529

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.1 bits (104), Expect = 6e-06
 Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 8/78 (10%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQI--GSLLKLKYLNLRWKNLT----EIGKILLLQNL 130
           N+     L  I+L  N L+ S+       +L  L  +++ +   +    +      L+  
Sbjct: 723 NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAF 781

Query: 131 DLSHN-NLSDSQFRFVIP 147
            + H  +   ++     P
Sbjct: 782 GIRHQRDAEGNRILRQWP 799

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.1 bits (104), Expect = 8e-06
 Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 2/71 (2%)

Query: 71  GELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNL 130
             +   +     + Q  NL N      I   I  L KL+ +       T     +  ++ 
Sbjct: 415 KPIKKDSRISLKDTQIGNLTNR--ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA 472

Query: 131 DLSHNNLSDSQ 141
           +  +    +++
Sbjct: 473 NSDYAKQYENE 483

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 8/76 (10%), Positives = 22/76 (28%), Gaps = 12/76 (15%)

Query: 75  SLNFSCFSNLQYINLWNNDLSGSIPPQIGS------LLKLKYLNLRWKNLTEI-----GK 123
             N      +  ++   N +  S    I         +    + L +  + +        
Sbjct: 637 IFNAKSVYVMGSVDFSYNKIG-SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT 695

Query: 124 ILLLQNLDLSHNNLSD 139
              +  + LS+N ++ 
Sbjct: 696 GSPISTIILSNNLMTS 711

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 12/112 (10%), Positives = 27/112 (24%), Gaps = 19/112 (16%)

Query: 59  WYHIELVECSIKGELGSLN-------------FSCFSNLQYINLWNNDLSGSIPPQIGSL 105
           W     V+    G +  L+                 + L+ ++   +  + S        
Sbjct: 311 WGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEE 370

Query: 106 LKLKYLNLRWKNLT------EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRL 151
           L       R   +        +     L   DL  + ++ +     I     
Sbjct: 371 LTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL----- 126
            LGS +F  F  LQ ++L   ++         SL  L  L L    +  +          
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 127 LQNLDLSHNNLSDSQ 141
           LQ L     NL+  +
Sbjct: 102 LQKLVAVETNLASLE 116

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.3 bits (118), Expect = 9e-08
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI-----GKILLLQNLDL 132
           +   S+L  + L  N +          L  L+ L     NL  +     G +  L+ L++
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 133 SHNNLSDSQF 142
           +HN +   + 
Sbjct: 132 AHNLIQSFKL 141

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI------GKILLLQNLD 131
           FS  S+LQ +     +L+      IG L  LK LN+    +           +  L++LD
Sbjct: 96  FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

Query: 132 LSHNNLS 138
           LS N + 
Sbjct: 156 LSSNKIQ 162

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL------LQNLD 131
           F+  S+LQ +N+ +N+           L  L+ L+    ++    K  L      L  L+
Sbjct: 490 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549

Query: 132 LSHNNLS 138
           L+ N+ +
Sbjct: 550 LTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL-----LQNL 130
           NF     L++++  +++L       +  SL  L YL++   +       +      L+ L
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 131 DLSHNNLSDSQFRFVIPYLR 150
            ++ N+  ++    +   LR
Sbjct: 451 KMAGNSFQENFLPDIFTELR 470

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL-----LQNLD 131
           F+  S+L+ + +  N    +  P I   L  L +L+L    L ++          LQ L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 132 LSHNNLSDSQFRF 144
           +SHNN        
Sbjct: 501 MSHNNFFSLDTFP 513

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 61  HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTE 120
           H++    ++K       F    NL Y+++ +     +       L  L+ L +   +  E
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 121 ------IGKILLLQNLDLSHNNLS 138
                   ++  L  LDLS   L 
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLE 483

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 68  SIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI-----G 122
           S +       F+   NL +++L    L    P    SL  L+ LN+   N   +      
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515

Query: 123 KILLLQNLDLSHNNLS 138
            +  LQ LD S N++ 
Sbjct: 516 CLNSLQVLDYSLNHIM 531

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI------GKIL 125
              S +    ++L+Y++L  N +   +      L +L++L+ +  NL ++        + 
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 126 LLQNLDLSHNNLSDS 140
            L  LD+SH +   +
Sbjct: 422 NLIYLDISHTHTRVA 436

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 81  FSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-----LQNLDLSHN 135
             + + ++L  N L         S  +L+ L+L    +  I          L  L L+ N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 136 NLS 138
            + 
Sbjct: 87  PIQ 89

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 17/68 (25%), Positives = 28/68 (41%)

Query: 74  GSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLS 133
              +FS     Q++ L N         ++ SL +L + + +  N      +  L+ LDLS
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 355

Query: 134 HNNLSDSQ 141
            N LS   
Sbjct: 356 RNGLSFKG 363

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 74  GSLNFSCFSNLQYINLWNNDLS--GSIPPQIGSLLKLKYLNLRWKNLTEIGKILL----L 127
            + +     +L++++L  N LS  G           LKYL+L +  +  +    L    L
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 128 QNLDLSHNNLSD 139
           ++LD  H+NL  
Sbjct: 399 EHLDFQHSNLKQ 410

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKY----LNLRWKNLTEI----GKILLLQN 129
           FS  +NL++++L +N +       +  L ++      L+L    +  I     K + L  
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204

Query: 130 LDLSHNNLS 138
           L L +N  S
Sbjct: 205 LTLRNNFDS 213

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 11/88 (12%)

Query: 61  HIELVECSIKGELGSLNFSCFSNLQYINLWNNDL-SGSIPPQIGSLLKLKYLNLRWKNLT 119
            +  VE ++              L+ +N+ +N + S  +P    +L  L++L+L    + 
Sbjct: 104 KLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 120 EI---------GKILLLQNLDLSHNNLS 138
            I            LL  +LDLS N ++
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 37.7 bits (88), Expect = 9e-04
 Identities = 11/88 (12%), Positives = 24/88 (27%), Gaps = 3/88 (3%)

Query: 52  FRSLQ-LGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKY 110
              L  L      L       +     F+C +N+   +L +  +              ++
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQH 308

Query: 111 LNLRWKNLTEIGKILLLQNLDLSHNNLS 138
           L L      +   + L     L+  +  
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTFTSNK 336

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL----- 126
            L + NF+ +S L  +++  N +S   P     L  LK LNL+   L+++          
Sbjct: 39  RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98

Query: 127 LQNLDLSHNNLSD 139
           L  L L  N++  
Sbjct: 99  LTELHLMSNSIQK 111

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 7/78 (8%)

Query: 68  SIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL- 126
            I  EL    +    N+  I L  N            +  L+ L LR   L  +      
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475

Query: 127 ------LQNLDLSHNNLS 138
                 L  LDLS+NN++
Sbjct: 476 FQPLRNLTILDLSNNNIA 493

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-----LQNLDL 132
           F+  +NL  ++L +N +             L  L+L    L+            LQ L L
Sbjct: 93  FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLL 152

Query: 133 SHNNLSDSQ 141
           S+N +   +
Sbjct: 153 SNNKIQALK 161

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 6e-08
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-----LQNLDL 132
                 L+ +NL +N+LS            L  L+L   ++ +I          L  LDL
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128

Query: 133 SHNNLSD 139
           SHN LS 
Sbjct: 129 SHNGLSS 135

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 61  HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTE 120
            + L+  SI+  + +  F    NL  ++L +N LS +       L  L+ L L    +  
Sbjct: 101 ELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159

Query: 121 IGKILL-------LQNLDLSHNNLS 138
           +    L       L+ L+LS N + 
Sbjct: 160 LKSEELDIFANSSLKKLELSSNQIK 184

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 13/75 (17%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL----------- 126
           F    NL  ++L NN+++      +  L KL+ L+L+  NL  + K              
Sbjct: 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535

Query: 127 --LQNLDLSHNNLSD 139
             L  L+L  N   +
Sbjct: 536 SHLHILNLESNGFDE 550

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL------LQNLD 131
           F     L+ I+L  N+L+        + + LK LNL+   +T + K +       L  LD
Sbjct: 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 615

Query: 132 LSHNNLS 138
           +  N   
Sbjct: 616 MRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 7/82 (8%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPP--QIGSLLKLKYLNLRWKNLTEIGKILL-----LQNL 130
                NLQ + L NN +         I +   LK L L    + E           L  L
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200

Query: 131 DLSHNNLSDSQFRFVIPYLRLS 152
            L++  L  S    +   L  +
Sbjct: 201 FLNNVQLGPSLTEKLCLELANT 222

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 53  RSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLN 112
             L L   ++  +                S+L  +NL +N            L +LK ++
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566

Query: 113 LRWKNLTEIGKILL-----LQNLDLSHNNLS 138
           L   NL  +   +      L++L+L  N ++
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 11/77 (14%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKI------- 124
           ++   +F     L+++N+ +ND+ G        L+ LKYL+L   + T +  +       
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN-SFTSLRTLTNETFVS 377

Query: 125 ---LLLQNLDLSHNNLS 138
                L  L+L+ N +S
Sbjct: 378 LAHSPLHILNLTKNKIS 394

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 74  GSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL------- 126
             L+    S+L+ + L +N +    P    ++ +L  L L    L       L       
Sbjct: 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222

Query: 127 -LQNLDLSHNNLSD 139
            ++NL LS++ LS 
Sbjct: 223 SIRNLSLSNSQLST 236

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 10/93 (10%)

Query: 53  RSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLN 112
           + L L      L   +      +      S L  +NL  N +S         L  L+ L+
Sbjct: 356 KYLSLSNSFTSLRTLTN----ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411

Query: 113 LRWKNLT------EIGKILLLQNLDLSHNNLSD 139
           L    +       E   +  +  + LS+N    
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 14/76 (18%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLR---------WKNLTEIGKILL-- 126
           F+    L+Y  L  N++       +  L  ++YLNL+           +L +I       
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 127 ---LQNLDLSHNNLSD 139
              L++L++  N++  
Sbjct: 328 LKCLEHLNMEDNDIPG 343

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 13/74 (17%)

Query: 78  FSCFSNLQYINLWNNDLS--------GSIPPQIGSLLKLKYLNLRWKNLTEIGKILL--- 126
                 L+ ++L +N+L+        G     +  L  L  LNL      EI   +    
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559

Query: 127 --LQNLDLSHNNLS 138
             L+ +DL  NNL+
Sbjct: 560 FELKIIDLGLNNLN 573

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 74  GSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI-----GKILLLQ 128
            +     ++NL  ++L  N+L+         L +L+Y  L + N+  +       +  ++
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299

Query: 129 NLDLSHNNLSDSQFRFVIPYL 149
            L+L  +    S     +P +
Sbjct: 300 YLNLKRSFTKQSISLASLPKI 320

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 80  CFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-----LQNLDLSH 134
           C  + +  +  +  L+  +P  + +   +  LNL    L  +          L +LD+  
Sbjct: 2   CTVSHEVADCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 135 NNLS 138
           N +S
Sbjct: 59  NTIS 62

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 78  FSCFSNLQYINLWNNDLS-GSIPPQIGSLL---KLKYLNLRWKNLTEIGKILL-----LQ 128
           F+   NL+Y++L N+  S  ++  +    L    L  LNL    +++I          L+
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408

Query: 129 NLDLSHNNLSDS 140
            LDL  N +   
Sbjct: 409 VLDLGLNEIGQE 420

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 2e-08
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL---RWKNLTEIGKILLLQNLDLS 133
           +      + +++L +N L  ++PP + +L  L+ L       +N+  +  +  LQ L L 
Sbjct: 458 HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLC 516

Query: 134 HNNLSD 139
           +N L  
Sbjct: 517 NNRLQQ 522

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLR------WKNLTEIGKILLLQNL 130
             +    L+ +   +N L  ++   + +L +L+ L L          +  +     L  L
Sbjct: 481 ALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538

Query: 131 DLSHNNLSD 139
           +L  N+L  
Sbjct: 539 NLQGNSLCQ 547

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 9e-08
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL--LQNLDLSHN 135
                NL  +++  N     +P       K+++LNL    +  +   +   L+ LD+S+N
Sbjct: 383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNN 441

Query: 136 NLSD 139
           NL  
Sbjct: 442 NLDS 445

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 22/114 (19%)

Query: 53  RSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQ---IGSLLKLK 109
           + + +    + LV CS              +L++++L  N +           G+   L+
Sbjct: 313 KRITVENSKVFLVPCSF--------SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364

Query: 110 YLNLRWKNLTEIGKILL-------LQNLDLSHNNLSDSQFRFVIP----YLRLS 152
            L L   +L  + K          L +LD+S N           P    +L LS
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLS 418

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL---- 126
            +G  +    +NLQ + L ++ ++ +I      SL  L++L+L   +L+ +         
Sbjct: 40  YIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98

Query: 127 -LQNLDLSHNNLSD 139
            L+ L+L  N    
Sbjct: 99  SLKYLNLMGNPYQT 112

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 68  SIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGK 123
           ++K     L  +       + L +  L    P Q   L  L+++ +    L      + +
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQ 125

Query: 124 ILLLQNLDLSHNNLS 138
              L+ L L+ N L 
Sbjct: 126 FAGLETLTLARNPLR 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLS 133
               S+LQ++ +    L   +P  +     L+ L L    L      I  +  L+ L + 
Sbjct: 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158

Query: 134 HNN 136
              
Sbjct: 159 ACP 161

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 68  SIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGK 123
            +     S       NLQ + L    +  S+P  I +L  LK L +R   L+     I  
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHH 227

Query: 124 ILLLQNLDLSHNNL 137
           +  L+ LDL     
Sbjct: 228 LPKLEELDLRGCTA 241

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 13/84 (15%)

Query: 61  HIELVECSIKG---ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKN 117
            +++    +      +  L       L+ ++L       + PP  G    LK L L+  +
Sbjct: 210 SLKIRNSPLSALGPAIHHL-----PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

Query: 118 -LT----EIGKILLLQNLDLSHNN 136
            L     +I ++  L+ LDL    
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRW-KNLT----EIGKILL 126
             G       + L+ + L +     ++P  I  L +L+ L+LR   NL+     I ++  
Sbjct: 248 IFGGR-----APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

Query: 127 LQNLDLSHNNLS 138
              + +  +  +
Sbjct: 303 NCIILVPPHLQA 314

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNL---DLSH 134
                N++ ++L  N LS      +    KL+ LNL    L E   +  L  L   DL++
Sbjct: 30  RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN 89

Query: 135 NNLSD 139
           N + +
Sbjct: 90  NYVQE 94

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNNL 137
            + F+ L+ +NL +N L       + SL  L+ L+L    + E+     ++ L  ++NN+
Sbjct: 54  LAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111

Query: 138 SD 139
           S 
Sbjct: 112 SR 113

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 7e-07
 Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 73  LGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI------GKILL 126
           +  ++ S     + I L NN ++       G   +++YL+L+   +  +           
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 127 LQNLDLSHNNLSD 139
           L++L+L +N + D
Sbjct: 171 LEHLNLQYNFIYD 183

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSG-SIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNL 130
            L  L+  C S +QY++L  N++   +      S   L++LNL++  + ++   ++   L
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193

Query: 131 ---DLSHNNLSD 139
              DLS N L+ 
Sbjct: 194 KTLDLSSNKLAF 205

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 5/64 (7%)

Query: 79  SCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL----LQNLDLSH 134
             F+ L+ ++L +N L+  + P+  S   + +++LR   L  I K L     L++ DL  
Sbjct: 188 VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

Query: 135 NNLS 138
           N   
Sbjct: 247 NGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 82  SNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-----LQNLDLSHNN 136
           +  +   + ++ L  ++     S   +K L+L    L++I    L     L+ L+LS N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 137 LSD 139
           L +
Sbjct: 70  LYE 72

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 10/65 (15%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL--LQNLDLSH 134
           +    S L+ ++L NN +      ++     ++ L+    N++ +        +N+ L++
Sbjct: 75  DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLAN 129

Query: 135 NNLSD 139
           N ++ 
Sbjct: 130 NKITM 134

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL----LQNLDLS 133
            +    L+++NL  N +   +  Q+    KLK L+L    L  +G        +  + L 
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222

Query: 134 HNNLSD 139
           +N L  
Sbjct: 223 NNKLVL 228

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDL 132
            F   + + +I+L NN L   I   +     L++ +LR                 +   +
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

Query: 133 SHNNLSD 139
           +   +  
Sbjct: 268 AKQTVKK 274

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNL---DLSH 134
                N++ ++L  N LS      +    KL+ LNL    L E   +  L  L   DL++
Sbjct: 30  RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN 89

Query: 135 NNLSD 139
           N + +
Sbjct: 90  NYVQE 94

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.5 bits (113), Expect = 4e-07
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNNL 137
            + F+ L+ +NL +N L       + SL  L+ L+L    + E+     ++ L  ++NN+
Sbjct: 54  LAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111

Query: 138 SD 139
           S 
Sbjct: 112 SR 113

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 73  LGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI------GKILL 126
           +  ++ S     + I L NN ++       G   +++YL+L+   +  +           
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 127 LQNLDLSHNNLSD 139
           L++L+L +N + D
Sbjct: 171 LEHLNLQYNFIYD 183

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSG-SIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNL 130
            L  L+  C S +QY++L  N++   +      S   L++LNL++  + ++   ++   L
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193

Query: 131 ---DLSHNNLS 138
              DLS N L+
Sbjct: 194 KTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 5e-06
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 82  SNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-----LQNLDLSHNN 136
           +  +   + ++ L  ++     S   +K L+L    L++I    L     L+ L+LS N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 137 LSD 139
           L +
Sbjct: 70  LYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 5/64 (7%)

Query: 79  SCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL----LQNLDLSH 134
             F+ L+ ++L +N L+  + P+  S   + +++LR   L  I K L     L++ DL  
Sbjct: 188 VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

Query: 135 NNLS 138
           N   
Sbjct: 247 NGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 10/65 (15%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL--LQNLDLSH 134
           +    S L+ ++L NN +      ++     ++ L+    N++ +        +N+ L++
Sbjct: 75  DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLAN 129

Query: 135 NNLSD 139
           N ++ 
Sbjct: 130 NKITM 134

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 9e-05
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL----LQNLDLS 133
            +    L+++NL  N +   +  Q+    KLK L+L    L  +G        +  + L 
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222

Query: 134 HNNLSD 139
           +N L  
Sbjct: 223 NNKLVL 228

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRW---KNLTEIGKILLLQNLDLS 133
                +NL  IN  NN L+   P  + +L KL  + +      ++T +  +  L  L L 
Sbjct: 63  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 120

Query: 134 HNNLSD 139
           +N ++D
Sbjct: 121 NNQITD 126

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL---RWKNLTEIGKILLLQNLDLS 133
             +  + L  + L  N L    P  I +L  L YL L      +++ +  +  LQ L   
Sbjct: 282 PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY 339

Query: 134 HNNLSD 139
           +N +SD
Sbjct: 340 NNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNL---DLS 133
             +  +      L   +++ ++      L ++  L      +  I  +  L NL   + S
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFS 76

Query: 134 HNNLSD 139
           +N L+D
Sbjct: 77  NNQLTD 82

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRW---KNLTEIGKILLLQNLDLS 133
             S   NL Y+ L+ N++S   P  + SL KL+ L        +++ +  +  +  L   
Sbjct: 304 PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAG 361

Query: 134 HNNLSD 139
           HN +SD
Sbjct: 362 HNQISD 367

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI---GKILLLQNLDLS 133
                + L  I + NN ++   P  + +L  L  L L    +T+I     +  L  L+LS
Sbjct: 85  PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 142

Query: 134 HNNLSD 139
            N +SD
Sbjct: 143 SNTISD 148

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNL---DLS 133
             +  +NL+ +   NN +S   P  +G L  L  L+L    L +IG +  L NL   DL+
Sbjct: 194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 251

Query: 134 HNNLSD 139
           +N +S+
Sbjct: 252 NNQISN 257

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 73  LGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI---GKILLLQN 129
                 +  + L+ +++ +N +S      +  L  L+ L      +++I   G +  L  
Sbjct: 168 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDE 225

Query: 130 LDLSHNNLSD 139
           L L+ N L D
Sbjct: 226 LSLNGNQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL---RWKNLTEIGKILLLQNLDLS 133
             +  +NL  ++L NN +S   P  +  L KL  L L   +  N++ +  +  L NL+L+
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELN 295

Query: 134 HNNLSD 139
            N L D
Sbjct: 296 ENQLED 301

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL---RWKNLTEIGKILLLQNLDLS 133
             S  + LQ +  +NN +S      + +L  + +L+    +  +LT +  +  +  L L+
Sbjct: 326 PVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 383

Query: 134 HNNLSD 139
               ++
Sbjct: 384 DQAWTN 389

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL--RWKNLTEIGKILLLQNLDLSH 134
                +NL  + L +N +S      +  L  L+ L+   +  +L  +  +  L+ LD+S 
Sbjct: 129 PLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 186

Query: 135 NNLSD 139
           N +SD
Sbjct: 187 NKVSD 191

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI---GKILLLQNLDLS 133
                +NL  ++L  N L       + SL  L  L+L    ++ +     +  L  L L 
Sbjct: 216 PLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG 273

Query: 134 HNNLSD 139
            N +S+
Sbjct: 274 ANQISN 279

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI---GKILLLQNLDLS 133
             +  +NL  + L+NN ++   P  + +L  L  L L    +++I     +  LQ L   
Sbjct: 107 PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 164

Query: 134 HNNLSD 139
            N ++D
Sbjct: 165 -NQVTD 169

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-----LQNLDL 132
           F     LQ +N+ +N+L          L  L  L+  +  +     IL      L   +L
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552

Query: 133 SHNNLS 138
           ++N+++
Sbjct: 553 TNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 5/73 (6%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL----- 126
            L S +FS FS LQ+++L   ++          L  L  L L    +             
Sbjct: 46  ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105

Query: 127 LQNLDLSHNNLSD 139
           L+NL      L+ 
Sbjct: 106 LENLVAVETKLAS 118

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-----LQNLDL 132
           +    +L  + L  N +    P     L  L+ L      L  +    +     L+ L++
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135

Query: 133 SHNNLSDSQF 142
           +HN +   + 
Sbjct: 136 AHNFIHSCKL 145

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL------LQNLD 131
           FS  ++L+ +      L+      IG L+ LK LN+    +              L ++D
Sbjct: 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159

Query: 132 LSHNNLS 138
           LS+N + 
Sbjct: 160 LSYNYIQ 166

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 75  SLNFSCFSNLQYINLWNNDLSGSIPPQ-IGSLLKLKYLNLRWKNLTEIGKILL-----LQ 128
           S NF     LQ+++  ++ L          SL KL YL++ + N       +      L 
Sbjct: 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451

Query: 129 NLDLSHNNLSDS 140
            L ++ N+  D+
Sbjct: 452 TLKMAGNSFKDN 463

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 9e-06
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL--LQN 129
               + F C +N+  ++L    +       +    K + L++    L +   + L  L++
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKS 332

Query: 130 LDLSHNNLSDS 140
           L L+ N  S S
Sbjct: 333 LTLTMNKGSIS 343

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 75  SLNFSCFSNLQYINLWNNDLS--GSIPPQIGSLLKLKYLNLRWKNLTEIGKILL----LQ 128
           S       +L Y++L  N LS  G           L++L+L +     +    +    LQ
Sbjct: 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQ 402

Query: 129 NLDLSHNNLSD 139
           +LD  H+ L  
Sbjct: 403 HLDFQHSTLKR 413

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 68  SIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL- 126
           S K    S  F+  +NL +++L    L         +L +L+ LN+   NL  +      
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518

Query: 127 ----LQNLDLSHNNLS 138
               L  LD S N + 
Sbjct: 519 QLYSLSTLDCSFNRIE 534

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL-----LQNLD 131
           F   ++L  + +  N    +    +  +   L +L+L    L +I   +      LQ L+
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503

Query: 132 LSHNNLS 138
           +SHNNL 
Sbjct: 504 MSHNNLL 510

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 74  GSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL------L 127
            S +    ++L++++L  N     +      L +L++L+ +   L  + +         L
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426

Query: 128 QNLDLSHNNLS 138
             LD+S+ N  
Sbjct: 427 LYLDISYTNTK 437

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 81  FSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-----LQNLDLSHN 135
            S+ + I+L  N L         +  +L++L+L    +  I          L NL L+ N
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 136 NLS 138
            + 
Sbjct: 91  PIQ 93

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 6/68 (8%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI------GKILLLQNLD 131
           F     L Y+++   +           L  L  L +   +  +            L  LD
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

Query: 132 LSHNNLSD 139
           LS   L  
Sbjct: 480 LSKCQLEQ 487

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLK----YLNLRWKNLTEIGKILL----LQN 129
           FS  +NL +++L  N +       +  L +       L++    +  I         L  
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE 208

Query: 130 LDLSHNNLSDSQFRFVIPYLR 150
           L L  N  S +  +  +  L 
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLA 229

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 11/88 (12%)

Query: 61  HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSG-SIPPQIGSLLKLKYLNLRWKNLT 119
           ++  VE  +   L S        L+ +N+ +N +    +P    +L  L +++L +  + 
Sbjct: 108 NLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 120 EI---------GKILLLQNLDLSHNNLS 138
            I             +  +LD+S N + 
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPID 194

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.9 bits (115), Expect = 3e-07
 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRW---KNLTEIGKILLLQNLDLS 133
                +NL+Y+NL  N ++   P  + +L+KL  L +      +++ +  +  L+ L L+
Sbjct: 61  GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLN 118

Query: 134 HNNLSD 139
            +N+SD
Sbjct: 119 EDNISD 124

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 6e-07
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL---RWKNLTEIGKILLLQNLDLS 133
             +  S L  + L NN L       IG L  L  L L      ++  +  +  + + D +
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFA 341

Query: 134 HNNLS 138
           +  + 
Sbjct: 342 NQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.8 bits (107), Expect = 3e-06
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRW----KNLTEIGKILLLQNLDL 132
                +NL+ + L  +++S   P  + +L K+  LNL       +L+ +  +  L  L +
Sbjct: 105 ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV 162

Query: 133 SHNNLSD 139
           + + + D
Sbjct: 163 TESKVKD 169

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 12/66 (18%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL---RWKNLTEIGKILLLQNLDLS 133
             +  ++L Y   + N ++   P  + ++ +L  L +   +  +L+ +  +  L  L++ 
Sbjct: 194 PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIG 251

Query: 134 HNNLSD 139
            N +SD
Sbjct: 252 TNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 5e-06
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNL---DLS 133
             +  +      L    ++  +      L  +  L +  + +  I  I  L NL   +L+
Sbjct: 17  PDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLN 74

Query: 134 HNNLSD 139
            N ++D
Sbjct: 75  GNQITD 80

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI---GKILLLQNLDLS 133
             +  + L  + + NN ++   P  + +L +L +L +    +++I     +  L+ L++ 
Sbjct: 216 PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVG 273

Query: 134 HNNLSD 139
            N +SD
Sbjct: 274 SNQISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRW---KNLTEIGKILLLQNLDLS 133
             +  + +  +NL  N     + P + ++  L YL +     K++T I  +  L +L L+
Sbjct: 127 PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLN 185

Query: 134 HNNLSD 139
           +N + D
Sbjct: 186 YNQIED 191

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI---GKILLLQNLDLS 133
             S    L  + +  N ++      + +L  L+ L L   N+++I     +  + +L+L 
Sbjct: 83  PLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLG 140

Query: 134 HNNL 137
            N+ 
Sbjct: 141 ANHN 144

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLD 131
                + L+ +N+ +N +S  I   + +L +L  L L    L       IG +  L  L 
Sbjct: 260 AVKDLTKLKMLNVGSNQIS-DISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 132 LSHNNLSD 139
           LS N+++D
Sbjct: 318 LSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.6 bits (96), Expect = 8e-05
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNL---DLS 133
             S  + L Y+ +  + +    P  I +L  L  L+L +  + +I  +  L +L      
Sbjct: 150 PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAY 207

Query: 134 HNNLSD 139
            N ++D
Sbjct: 208 VNQITD 213

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL---RWKNLTEIGKILLLQNLDLS 133
             +  S L ++ +  N +S  I   +  L KLK LN+   +  +++ +  +  L +L L+
Sbjct: 238 PLANLSQLTWLEIGTNQIS-DINA-VKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLN 295

Query: 134 HNNLSDS 140
           +N L + 
Sbjct: 296 NNQLGNE 302

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 68  SIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLL-KLKYLNLRWKNLTEIGKILL 126
           +  G   +L  +    LQ ++L +N L  +          +L  LNL +  L ++ K L 
Sbjct: 215 TPSGVCSAL-AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP 273

Query: 127 --LQNLDLSHNNLSDSQFRFVIPYLR 150
             L  LDLS+N L  +     +P + 
Sbjct: 274 AKLSVLDLSYNRLDRNPSPDELPQVG 299

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.8 bits (111), Expect = 6e-07
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 68  SIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL- 126
           S++   G+ +    S L  +NL    L   +P  + +  KL  L+L +  L         
Sbjct: 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRLDRNPSPDEL 295

Query: 127 --LQNLDLSHNNLSDSQ 141
             + NL L  N   DS+
Sbjct: 296 PQVGNLSLKGNPFLDSE 312

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 9/73 (12%)

Query: 75  SLNFSCFSNLQYINLWNN---DLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL----- 126
           +L    F  LQ + L N      SG       + ++L+ L+L   +L +           
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253

Query: 127 -LQNLDLSHNNLS 138
            L +L+LS   L 
Sbjct: 254 QLNSLNLSFTGLK 266

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.6 bits (113), Expect = 4e-07
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 79  SCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNNLS 138
           +    L+ + +  N L+ S+P     LL+L   +    +L  +     L  L +  N L+
Sbjct: 78  ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL--PSGLCKLWIFGNQLT 134

Query: 139 D 139
            
Sbjct: 135 S 135

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 81  FSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNNLS 138
            S LQ +++ +N L+ S+P     L KL   N R  +L  +     L+ L +S N L+
Sbjct: 180 PSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 40.6 bits (95), Expect = 8e-05
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLL 127
            L +L     +++  + + +N+L+ S+P       +L+ L +    LT        +L L
Sbjct: 51  GLTTLPDCLPAHITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQLTSLPVLPPGLLEL 106

Query: 128 QNLDLSHNNLSDS 140
                   +L   
Sbjct: 107 SIFSNPLTHLPAL 119

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 82  SNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI--GKILLLQNLDLSHNNL 137
           S L  ++++ N L+  +P  +  L     +NL    L+E     +  + +       +
Sbjct: 261 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 8/62 (12%)

Query: 82  SNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLSHNNL 137
           S L+ + +  N L+ S+P     L     L++    LT     +  +     ++L  N L
Sbjct: 241 SELKELMVSGNRLT-SLPMLPSGL---LSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296

Query: 138 SD 139
           S+
Sbjct: 297 SE 298

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 5/73 (6%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL----- 126
            + +  FS   NL +++L    +         S  +L  L L    L  + +  L     
Sbjct: 47  TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106

Query: 127 LQNLDLSHNNLSD 139
           L++L      +S 
Sbjct: 107 LKHLFFIQTGISS 119

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 61  HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTE 120
            ++L    +K +     F     L+ +NL ++ L  S       L  L++LNL+  +  +
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463

Query: 121 IGKILL--------LQNLDLSHNNLS 138
                         L+ L LS  +LS
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLS 489

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-----LQNLDL 132
           F CFS LQ ++L    LS  +P  +  L  LK L L       + +I       L +L +
Sbjct: 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332

Query: 133 SHNNLS 138
             N   
Sbjct: 333 KGNTKR 338

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-----LQNLDL 132
            S    L+++      +S      + +   L+ L L   +++ I          L+ LD 
Sbjct: 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160

Query: 133 SHNNLSD 139
            +N +  
Sbjct: 161 QNNAIHY 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-----LQNLDL 132
           F+    + +++L +N L+ S   +  S LK  YLNL   +++ I   LL      + ++L
Sbjct: 496 FTSLKMMNHVDLSHNRLT-SSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINL 554

Query: 133 SHNNLS 138
             N L 
Sbjct: 555 RQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI------GKIL 125
           +  +L     S+LQ +NL  N+             +L+ L+L +  L           + 
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425

Query: 126 LLQNLDLSHNNLSDSQ 141
           LL+ L+LSH+ L  S 
Sbjct: 426 LLKVLNLSHSLLDISS 441

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-----LQNLDL 132
           F     L  + L  N L       +     LK+L      ++ I  I L     L++L L
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136

Query: 133 SHNNLS 138
             N++S
Sbjct: 137 GSNHIS 142

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPP-QIGSLLKLKYLNLRWKNLTEIGKILL-----LQNLD 131
           F     L+ ++L    L          +L  LK LNL    L    + L      LQ+L+
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455

Query: 132 LSHNNLSD 139
           L  N+   
Sbjct: 456 LQGNHFPK 463

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 61  HIELVECSIKGELGSLNFSCFSNLQYINLWNNDL--SGSIPPQIGSLLKLKYLNLRWKNL 118
           H+ +   + + ELG+       NL+ ++L ++D+  S     Q+ +L  L+ LNL +   
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388

Query: 119 TEIGKILL-----LQNLDLSHNNLS 138
             +          L+ LDL+   L 
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLK 413

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 74  GSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL----LQN 129
                 C  +++ INL  +               L+ L+L   +L+E+   L+    L+ 
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKK 305

Query: 130 LDLSHNNLS 138
           L LS N   
Sbjct: 306 LVLSANKFE 314

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQ-IGSLLKLKYLNLRWKNLTEIGKILL---- 126
            L  ++ S F +L ++++  N     +    + +L  L+ L+L   ++       L    
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 127 ---LQNLDLSHNNLSD 139
              LQ+L+LS+N    
Sbjct: 375 LSHLQSLNLSYNEPLS 390

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGS---LLKLKYLNLRWKNLTEIGKILL-----LQN 129
           F     LQ++NL  N        +  S   L +L+ L L + +L+ I +        + +
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504

Query: 130 LDLSHNNLS 138
           +DLSHN L+
Sbjct: 505 VDLSHNRLT 513

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNL-TEIGKILL-----LQNLD 131
               S L+ + L  N           +   L +L+++      E+G   L     L+ LD
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 132 LSHNNLSDSQF 142
           LSH+++  S  
Sbjct: 357 LSHDDIETSDC 367

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 81  FSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-----LQNLDLSHN 135
            ++ + +    N L          L+ L +L+L    +  I +        L  L L+ N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 136 NLS 138
            L 
Sbjct: 92  PLI 94

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-------LQNL 130
                 L+ + L +N +S    P+     KLK L+ +   +  + K  +         +L
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184

Query: 131 DLSHNNLSD 139
           +L+ N+++ 
Sbjct: 185 NLNGNDIAG 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 12/67 (17%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRW----KNLTEIGKILLLQNLDL 132
           N S  ++L  +++ ++    SI  +I +L K+  ++L +     ++  +  +  L++L++
Sbjct: 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNI 166

Query: 133 SHNNLSD 139
             + + D
Sbjct: 167 QFDGVHD 173

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRW-----KNLTEIGKILLLQNLD 131
             S  SNL+ + +   D++    P +  L  L  L++         LT+I  +  + ++D
Sbjct: 83  PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142

Query: 132 LSHNNL 137
           LS+N  
Sbjct: 143 LSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLD 131
                 N++ + + N   +   P  I  L  L+ L +  K++T      +  +  L  LD
Sbjct: 61  GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 132 LSHNNLSDSQF 142
           +SH+   DS  
Sbjct: 119 ISHSAHDDSIL 129

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 4/68 (5%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL---RWKNLTEIGKILLLQNLDLS 133
             +    +  I+L  N     I P + +L +LK LN+      +   I     L  L   
Sbjct: 131 KINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAF 189

Query: 134 HNNLSDSQ 141
              +   +
Sbjct: 190 SQTIGGKK 197

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 9e-07
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL---- 126
            + + +F     LQ + L +     +I  +   +L  L+ L+L    +  +         
Sbjct: 38  TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97

Query: 127 -LQNLDLSHNNLSDS 140
            L  L L    LSD+
Sbjct: 98  HLFELRLYFCGLSDA 112

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 6e-06
 Identities = 23/67 (34%), Positives = 32/67 (47%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLD 131
           EL S NF     + YI+L  N ++         L KL+ L+LR   LT I  I  + ++ 
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387

Query: 132 LSHNNLS 138
           LS N L 
Sbjct: 388 LSGNKLV 394

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 7e-06
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-----LQNLDL 132
           F    +L+ +NL  N ++         L  L+ LNL +  L E+          +  +DL
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345

Query: 133 SHNNLS 138
             N+++
Sbjct: 346 QKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 5/77 (6%)

Query: 66  ECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKI 124
           + + + EL    F   S+LQ + L +N L+ S+PP +   L  L+ L+L    LT +   
Sbjct: 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHN 522

Query: 125 LL---LQNLDLSHNNLS 138
            L   L+ LD+S N L 
Sbjct: 523 DLPANLEILDISRNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 10/101 (9%)

Query: 61  HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQI-----GSLLKLKYLNLRW 115
            + L +       G    S   +L+ + L  N L  +   ++       L  L+ L L  
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489

Query: 116 KNLTEIGKILL-----LQNLDLSHNNLSDSQFRFVIPYLRL 151
             L  +   +      L+ L L+ N L+      +   L +
Sbjct: 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEI 530

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 61  HIELVECSIKGE-LGSLNFSCFSNLQYINLWNNDLSG-SIPPQIGSLLKLKYLNLRWKNL 118
            + L  C +    L    F     L  ++L  N +    + P  G L  LK ++     +
Sbjct: 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160

Query: 119 TEIGKILL--LQNLDLSHNNLSDSQFRFVIP 147
             + +  L  LQ   LS  +L+ +     + 
Sbjct: 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 79  SCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNNLS 138
               +L+ +    N L+  +P    SL  L   N   K L+++    LL+ L +S+N L 
Sbjct: 88  ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLE 144

Query: 139 D 139
            
Sbjct: 145 K 145

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 79  SCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI-GKILLLQNLDLSHNNL 137
               +L++I   NN L     P++ +L  L  +     +L ++    L L+++   +N L
Sbjct: 170 DLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL 227

Query: 138 SD 139
            +
Sbjct: 228 EE 229

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 1/62 (1%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNN 136
                  L  I   NN L   +P    SL  +   N   + L E+  +  L  +   +N 
Sbjct: 190 ELQNLPFLTAIYADNNSLK-KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL 248

Query: 137 LS 138
           L 
Sbjct: 249 LK 250

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNN 136
                S L+ I++ NN L   +P    SL  +   N + + L E+  +  L  +   +N+
Sbjct: 148 ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS 206

Query: 137 LSD 139
           L  
Sbjct: 207 LKK 209

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI-GKILLLQNLDLSHNN 136
                +L+ I   NN L     P++ +L  L  +      L  +      L+ L++  N 
Sbjct: 211 PDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNY 268

Query: 137 LSD 139
           L+D
Sbjct: 269 LTD 271

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 14/78 (17%)

Query: 76  LNFSCFSNLQYINLWNNDLSGSIPPQIGSLL-------------KLKYLNLRWKNLTEIG 122
           +      +        ++   + PP  G                +   L L    L+ + 
Sbjct: 28  VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87

Query: 123 KILL-LQNLDLSHNNLSD 139
           ++   L++L  S N+L++
Sbjct: 88  ELPPHLESLVASCNSLTE 105

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 79  SCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNNLS 138
               NL+ +++  N L    P    S+  L+  +   +          L+ L +  N L 
Sbjct: 354 ELPQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQN---LKQLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 3/62 (4%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNN 136
                  L  I   NN L  ++P    SL  L   +    +L E+     L  LD+S N 
Sbjct: 232 ELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENI 288

Query: 137 LS 138
            S
Sbjct: 289 FS 290

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 82  SNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNNLSD 139
            +L+ +N+ +N L+  +P    SL  L      +  L+E+     L  L+ S N +  
Sbjct: 257 PSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSEL--PPNLYYLNASSNEIRS 311

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 79  SCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI-GKILLLQNLDLSHNNL 137
               NL Y+N  +N++  S+     SL   + LN+    L E+      L+ L  S N+L
Sbjct: 294 ELPPNLYYLNASSNEIR-SLCDLPPSL---EELNVSNNKLIELPALPPRLERLIASFNHL 349

Query: 138 SD 139
           ++
Sbjct: 350 AE 351

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDL-SGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL--LQ 128
           ++    FS   N+  I +  N L +    P     LKL YL +    LT I K L   L 
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN 196

Query: 129 NLDLSHNNLS 138
            L L HN + 
Sbjct: 197 ELHLDHNKIQ 206

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 12/72 (16%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIG-----------KILL 126
            S    L+ ++L NN LS  +P  +  L  L+ + L   N+T++G           K   
Sbjct: 237 LSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295

Query: 127 LQNLDLSHNNLS 138
              + L +N + 
Sbjct: 296 YNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 73  LGSLNFSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL----- 126
           L  +       L  ++L +N +  +I  +      KL  L L    +  I    L     
Sbjct: 184 LTGIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242

Query: 127 LQNLDLSHNNLS 138
           L+ L L +N LS
Sbjct: 243 LRELHLDNNKLS 254

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKIL----LLQNLDL 132
              +S L  + L +N +   I       L  L+ L+L    L+ +   L    LLQ + L
Sbjct: 213 LLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYL 271

Query: 133 SHNNLS 138
             NN++
Sbjct: 272 HTNNIT 277

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL----LQNLDLS 133
           F     L+ + + NN L  ++      +  LK L+L   +L  + +       L+NL L 
Sbjct: 274 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 332

Query: 134 HNNLSD 139
           HN++  
Sbjct: 333 HNSIVT 338

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL--LQNLDLSHN 135
                 L+ ++L +N L   +        +L+ L L   ++  +       L+NL LSHN
Sbjct: 297 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHN 355

Query: 136 NLSDSQFRFVIPYLR 150
           +   +  R +   + 
Sbjct: 356 DWDCNSLRALFRNVA 370

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL-----LQNLD 131
           F     L  + L  NDLS S+P  I  +  KL  L++   NL  I          LQNL 
Sbjct: 119 FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177

Query: 132 LSHNNLSD 139
           LS N L+ 
Sbjct: 178 LSSNRLTH 185

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.5 bits (105), Expect = 5e-06
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 73  LGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL--LQNL 130
           L  ++ S   +L + N+  N LS      +   + ++ L+    ++  +   +   L  L
Sbjct: 183 LTHVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTIL 237

Query: 131 DLSHNNLSD 139
            L HNNL+D
Sbjct: 238 KLQHNNLTD 246

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNNL 137
           F   ++LQ + L +N L+  +      +  L + N+ +  L+ +   + ++ LD SHN++
Sbjct: 167 FQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 223

Query: 138 S 138
           +
Sbjct: 224 N 224

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.5 bits (97), Expect = 5e-05
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL-----LQNLD 131
           F+    +Q + +  N +   +PP +  ++  L  L L   +L+ + + +      L  L 
Sbjct: 95  FAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153

Query: 132 LSHNNLSD 139
           +S+NNL  
Sbjct: 154 MSNNNLER 161

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.1 bits (96), Expect = 7e-05
 Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 7/81 (8%)

Query: 65  VECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGK 123
           ++   +           +N + +   N+ +   +P  +  S  +++ LNL    + EI  
Sbjct: 34  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDT 92

Query: 124 ILL-----LQNLDLSHNNLSD 139
                   +Q L +  N +  
Sbjct: 93  YAFAYAHTIQKLYMGFNAIRY 113

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 73  LGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-----L 127
           +  +       L  + L +N+L+      + +   L  ++L +  L +I          L
Sbjct: 223 INVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280

Query: 128 QNLDLSHNNLSD 139
           + L +S+N L  
Sbjct: 281 ERLYISNNRLVA 292

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 75  SLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL--LQNLDL 132
           +L       L+ ++L +N L   +        +L+ L L   ++  +       L+NL L
Sbjct: 288 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTL 346

Query: 133 SHNNLSDSQFRFVIPYLR 150
           SHN+   +  R +   + 
Sbjct: 347 SHNDWDCNSLRALFRNVA 364

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL----LQNLDLS 133
           F     L+ + + NN L  ++      +  LK L+L   +L  + +       L+NL L 
Sbjct: 268 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 326

Query: 134 HNNLSD 139
           HN++  
Sbjct: 327 HNSIVT 332

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL--LQN 129
            L  ++ S   +L + N+  N LS      +   + ++ L+    ++  +   +   L  
Sbjct: 176 RLTHVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTI 230

Query: 130 LDLSHNNLSD 139
           L L HNNL+D
Sbjct: 231 LKLQHNNLTD 240

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL-----LQNLD 131
           F     L  + L  NDLS S+P  I  +  KL  L++   NL  I          LQNL 
Sbjct: 113 FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171

Query: 132 LSHNNLSDSQFR 143
           LS N L+     
Sbjct: 172 LSSNRLTHVDLS 183

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNNL 137
           F   ++LQ + L +N L+  +      +  L + N+ +  L+ +   + ++ LD SHN++
Sbjct: 161 FQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 217

Query: 138 S 138
           +
Sbjct: 218 N 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 7/71 (9%)

Query: 75  SLNFSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL-----LQ 128
                  +N + +   N+ +   +P  +  S  +++ LNL    + EI          +Q
Sbjct: 38  GFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 129 NLDLSHNNLSD 139
            L +  N +  
Sbjct: 97  KLYMGFNAIRY 107

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 7/67 (10%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL-----LQNLD 131
              F  ++ +NL +  +   I          ++ L + +  +  +   +      L  L 
Sbjct: 65  LDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123

Query: 132 LSHNNLS 138
           L  N+LS
Sbjct: 124 LERNDLS 130

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 73  LGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-----L 127
           +  +       L  + L +N+L+      + +   L  ++L +  L +I          L
Sbjct: 217 INVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274

Query: 128 QNLDLSHNNLSD 139
           + L +S+N L  
Sbjct: 275 ERLYISNNRLVA 286

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL----- 126
              S +    ++L+Y++L  N +  ++      L +L++L+ +  NL ++ +  +     
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 127 -LQNLDLSHNNLS 138
            L  LD+SH +  
Sbjct: 422 NLIYLDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQI--GSLLKLKYLNLRWKNLTEIGKILL-----LQN 129
           NF     L++++  +++L   +       SL  L YL++   +       +      L+ 
Sbjct: 391 NFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 130 LDLSHNNLSDS 140
           L ++ N+  ++
Sbjct: 450 LKMAGNSFQEN 460

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 77  NFSCFSNLQYINLWNNDLS--GSIPPQIGSLLKLKYLNLRWKNLTEIGKILL----LQNL 130
           +     +L++++L  N LS  G           LKYL+L +  +  +    L    L++L
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401

Query: 131 DLSHNNLSD 139
           D  H+NL  
Sbjct: 402 DFQHSNLKQ 410

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 5/73 (6%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL----- 126
            LGS +F  F  LQ ++L   ++         SL  L  L L    +  +          
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 127 LQNLDLSHNNLSD 139
           LQ L     NL+ 
Sbjct: 102 LQKLVAVETNLAS 114

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 61  HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLT 119
            +++   S +       F+   NL +++L    L   + P    SL  L+ LN+    L 
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLK 507

Query: 120 EIGKILL-----LQNLDLSHNNLS 138
            +   +      LQ + L  N   
Sbjct: 508 SVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-----LQNLDL 132
           +   S+L  + L  N +          L  L+ L     NL  +    +     L+ L++
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 133 SHNNLSD 139
           +HN +  
Sbjct: 132 AHNLIQS 138

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI------GKILLLQNLD 131
           FS  S+LQ +     +L+      IG L  LK LN+    +           +  L++LD
Sbjct: 96  FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

Query: 132 LSHNNLS 138
           LS N + 
Sbjct: 156 LSSNKIQ 162

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 65  VECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKI 124
            +C        +  +   + + ++L  N L         S  +L+ L+L    +  I   
Sbjct: 12  YQCMELN-FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 125 LL-----LQNLDLSHNNLS 138
                  L  L L+ N + 
Sbjct: 71  AYQSLSHLSTLILTGNPIQ 89

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.1 bits (106), Expect = 3e-06
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRW---KNLTEIGKILLLQNLDLS 133
                  L+ + L NN ++  I   +  L KL  L+L      ++  +  +  LQNL LS
Sbjct: 126 GLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 183

Query: 134 HNNLSD 139
            N++SD
Sbjct: 184 KNHISD 189

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNL---DLS 133
               F+     NL    ++ ++      L  +  +     ++  +  I  L N+    L+
Sbjct: 16  PDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLN 73

Query: 134 HNNLSD 139
            N L+D
Sbjct: 74  GNKLTD 79

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI---GKILLLQNLDLS 133
             +   NL ++ L  N +   +   +  L KLK L+L    +++I     +  L++L L 
Sbjct: 82  PLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG 139

Query: 134 HNNLSD 139
           +N ++D
Sbjct: 140 NNKITD 145

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNL---DLS 133
             +  +++  I   N+D+  S+   I  L  +  L L    LT+I  +  L+NL    L 
Sbjct: 38  TQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLD 95

Query: 134 HNNLSD 139
            N + D
Sbjct: 96  ENKIKD 101

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRW---KNLTEIGKILLLQNLDLS 133
             S  + L  ++L +N +S  I P +  L KL+ L L      +L  +  +  L  L+L 
Sbjct: 148 VLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 205

Query: 134 HNNLSDSQFRFVIPYLRL 151
                +         +  
Sbjct: 206 SQECLNKPINHQSNLVVP 223

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 73  LGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL---RWKNLTEIGKILLLQN 129
           +  L+ S    L Y+ L N +L+  +   +    KLK L+      ++ + +GKI  L N
Sbjct: 309 ITELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNN 365

Query: 130 LDLSHNNLSD 139
              +      
Sbjct: 366 NFEAEGQTIT 375

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI--GKILLLQN 129
            + +L+ S  +NL Y+   +N L+ ++   +  L KL YLN     LT++   +  LL  
Sbjct: 75  NITTLDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTY 131

Query: 130 LDLSHNNLSD 139
           L+ + N L++
Sbjct: 132 LNCARNTLTE 141

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.5 bits (103), Expect = 9e-06
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 73  LGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI--GKILLLQNL 130
           +  L+ S    L  +N   N+++  +   +   ++L +L+     LTEI    +  L   
Sbjct: 182 ITELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYF 238

Query: 131 DLSHNNLSD 139
           D S N L++
Sbjct: 239 DCSVNPLTE 247

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL--LQN 129
            +  L+ +    L +++  +N L+  I   +  L +L Y +     LTE+    L  L  
Sbjct: 202 NITKLDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTT 258

Query: 130 LDLSHNNLSD 139
           L     +L +
Sbjct: 259 LHCIQTDLLE 268

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI--GKILLLQNLDLSH 134
                + L  +   +N+++ ++   +     L YL      LT +    +  L  L+   
Sbjct: 59  GIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDT 115

Query: 135 NNLSD 139
           N L+ 
Sbjct: 116 NKLTK 120

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI--GKILLLQN 129
            L  ++ S  + L  ++   N     +   +    +L  L+  +  +TE+   +  LL  
Sbjct: 138 TLTEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELDVSQNKLLNR 195

Query: 130 LDLSHNNLSD 139
           L+   NN++ 
Sbjct: 196 LNCDTNNITK 205

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 73  LGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI--GKILLLQNL 130
             +++    + L  ++  N+ ++  +   I  L  L  L     N+T +   +   L  L
Sbjct: 33  TDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNNITTLDLSQNTNLTYL 90

Query: 131 DLSHNNLSD 139
               N L++
Sbjct: 91  ACDSNKLTN 99

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI--GKILLLQN 129
           +L +L+ +  + L Y+N   N L+  +   +     L YLN     LTEI       L  
Sbjct: 96  KLTNLDVTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTE 152

Query: 130 LDLSHNNLSDS 140
           LD   N     
Sbjct: 153 LDCHLNKKITK 163

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI--GKILLLQN 129
           +L  ++ +  + L Y           +   +    +L  L+ +   +TE+   +   L  
Sbjct: 265 DLLEIDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGITELDLSQNPKLVY 322

Query: 130 LDLSHNNLSD 139
           L L++  L++
Sbjct: 323 LYLNNTELTE 332

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 15/80 (18%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 62  IELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI 121
           +  ++C +  ++  L+ +  + L  ++   N ++  +   +     L  LN    N+T++
Sbjct: 150 LTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNITKL 206

Query: 122 --GKILLLQNLDLSHNNLSD 139
              + + L  LD S N L++
Sbjct: 207 DLNQNIQLTFLDCSSNKLTE 226

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQ 128
           +L  L+ S    L Y+N   N L+  I   +    +L  L+          ++     L 
Sbjct: 117 KLTKLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLDVTPQTQLT 173

Query: 129 NLDLSHNNLSD 139
            LD S N +++
Sbjct: 174 TLDCSFNKITE 184

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGS-LLKLKYLNLRWKNLTEIGKILL--LQNLDLSH 134
           F    NL  + L NN +S  I P   + L+KL+ L L    L E+ + +   LQ L +  
Sbjct: 72  FKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE 130

Query: 135 NNLS 138
           N ++
Sbjct: 131 NEIT 134

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-----LQNLDL 132
           F     L YI + + +++ +IP   G    L  L+L    +T++    L     L  L L
Sbjct: 167 FQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223

Query: 133 SHNNLSD 139
           S N++S 
Sbjct: 224 SFNSISA 230

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 73  LGSLNFSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL----- 126
           + ++      +L  ++L  N ++  +       L  L  L L + +++ +    L     
Sbjct: 183 ITTIPQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241

Query: 127 LQNLDLSHNNLS 138
           L+ L L++N L 
Sbjct: 242 LRELHLNNNKLV 253

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKIL----L 126
           ++ + +    +NL  + L  N +S ++      +   L+ L+L    L ++   L     
Sbjct: 206 KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 264

Query: 127 LQNLDLSHNNLS 138
           +Q + L +NN+S
Sbjct: 265 IQVVYLHNNNIS 276

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.6 bits (105), Expect = 5e-06
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI-GKILLLQNL 130
            L SL  +    +  + +  N L  S+P    SL   +YL+     L+ +      L++L
Sbjct: 70  NLSSLPDNLPPQITVLEITQNALI-SLPELPASL---EYLDACDNRLSTLPELPASLKHL 125

Query: 131 DLSHNNLS 138
           D+ +N L+
Sbjct: 126 DVDNNQLT 133

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.1 bits (96), Expect = 7e-05
 Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 81  FSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGK-ILLLQNLDLSHNNLS 138
            ++L+Y++  +N LS ++P    SL   K+L++    LT + +   LL+ ++  +N L+
Sbjct: 99  PASLEYLDACDNRLS-TLPELPASL---KHLDVDNNQLTMLPELPALLEYINADNNQLT 153

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 81  FSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI-GKILLLQNLDLSHNNLS 138
            +    + L   +LS S+P  +    ++  L +    L  +      L+ LD   N LS
Sbjct: 58  INQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALISLPELPASLEYLDACDNRLS 113

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 38.0 bits (88), Expect = 7e-04
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 79  SCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKIL-LLQNLDLSHNNL 137
              + L+YIN  NN L+  +P    SL   + L++R   LT + ++   L+ LD+S N L
Sbjct: 137 ELPALLEYINADNNQLT-MLPELPTSL---EVLSVRNNQLTFLPELPESLEALDVSTNLL 192

Query: 138 S 138
            
Sbjct: 193 E 193

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKI--LLLQNLDLSH 134
               F+NL+ ++L +N +S  + P +  L KL+ L++    L  +  I    L  L L +
Sbjct: 58  GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDN 115

Query: 135 NNLSD 139
           N L D
Sbjct: 116 NELRD 120

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI---GKILLLQNLDLS 133
                + L+ +++  N L  ++         L  L L    L +      +  L+ L + 
Sbjct: 80  PLKDLTKLEELSVNRNRLK-NLNG--IPSACLSRLFLDNNELRDTDSLIHLKNLEILSIR 136

Query: 134 HNNLSD 139
           +N L  
Sbjct: 137 NNKLKS 142

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL----- 126
            +   +F     L+ + + +     ++ P     L L  L++   NLT +  + +     
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249

Query: 127 LQNLDLSHNNLSD 139
           L+ L+LS+N +S 
Sbjct: 250 LRFLNLSYNPIST 262

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 7/67 (10%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL-----LQNLD 131
           F+  SNL  +++  N +   +   +   L  LK L +   +L  I          L+ L 
Sbjct: 100 FTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158

Query: 132 LSHNNLS 138
           L   NL+
Sbjct: 159 LEKCNLT 165

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL---- 126
            L    F+ F +L+ + L  N +S ++ P    +L  L+ L LR   L  I   +     
Sbjct: 46  TLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104

Query: 127 -LQNLDLSHNNLS 138
            L  LD+S N + 
Sbjct: 105 NLTKLDISENKIV 117

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL-----LQNLD 131
                 L+++NL  N +S +I   +   LL+L+ + L    L  +          L+ L+
Sbjct: 244 VRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302

Query: 132 LSHNNLS 138
           +S N L+
Sbjct: 303 VSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL-----LQNLD 131
           FS  ++L+ + L   +L+ SIP +    L  L  L LR  N+  I          L+ L+
Sbjct: 148 FSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206

Query: 132 LSHNNLSDSQFRFVIPYLRL 151
           +SH    D+     +  L L
Sbjct: 207 ISHWPYLDTMTPNCLYGLNL 226

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL---RWKNLTEIGKILLLQNLDLS 133
                +NL  + L +N ++  + P + +L K+  L L     KN++ I  +  ++ LDL+
Sbjct: 58  GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT 115

Query: 134 HNNLSD 139
              ++D
Sbjct: 116 STQITD 121

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRW---KNLTEIGKILLLQNLDLS 133
             +    +  ++ +   ++ +I   +  L  L  L L+     +L  +  +  +  L+LS
Sbjct: 36  TQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQITDLAPLKNLTKITELELS 93

Query: 134 HNNLSD 139
            N L +
Sbjct: 94  GNPLKN 99

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 79  SCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNL---DLSHN 135
              +N   I    ++++ ++      L  +  L+     +T I  +  L NL   +L  N
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN 73

Query: 136 NLSD 139
            ++D
Sbjct: 74  QITD 77

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRW---KNLTEIGKILLLQNLDLS 133
             +  SNLQ + L  N ++ +I P +  L  L+YL++      +LT +  +  L  L   
Sbjct: 124 PLAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181

Query: 134 HNNLSD 139
            N +SD
Sbjct: 182 DNKISD 187

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNL---DLS 133
                + +  + L  N L  ++   I  L  +K L+L    +T++  +  L NL    L 
Sbjct: 80  PLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 137

Query: 134 HNNLSD 139
            N +++
Sbjct: 138 LNQITN 143

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRW---KNLTEIGKILLLQNLDLS 133
             +  +NLQY+++ N  +S  + P + +L KL  L        +++ +  +  L  + L 
Sbjct: 146 PLAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLK 203

Query: 134 HNNLSD 139
           +N +SD
Sbjct: 204 NNQISD 209

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNL---DLS 133
             +   +++ ++L +  ++  + P +  L  L+ L L    +T I  +  L NL    + 
Sbjct: 102 AIAGLQSIKTLDLTSTQIT-DVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIG 159

Query: 134 HNNLSD 139
           +  +SD
Sbjct: 160 NAQVSD 165

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 61  HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTE 120
            + L                F  L++++  N  L+ SI   +  L KLK L L    ++ 
Sbjct: 21  ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSG 78

Query: 121 IGKILL-----LQNLDLSHNNLSD 139
             ++L      L +L+LS N + D
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKD 102

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLR------WKNLTEIGKILLLQNL 130
           N    + L+ + L +N +SG +         L +LNL          +  + K+  L++L
Sbjct: 59  NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118

Query: 131 DLSHN 135
           DL + 
Sbjct: 119 DLFNC 123

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 12/87 (13%)

Query: 66  ECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGS---LLKLKYLNLRWKNLTEIG 122
           +  +       +   F NL+++ + + +    +         L +L+ +++    LT+ G
Sbjct: 236 DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295

Query: 123 KILL---------LQNLDLSHNNLSDS 140
             LL         L+ +++ +N LSD 
Sbjct: 296 ARLLLDHVDKIKHLKFINMKYNYLSDE 322

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEI-----GKIL 125
           EL   +FS   +LQ++ +        I       L  L  L L +    ++       + 
Sbjct: 44  ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103

Query: 126 LLQNLDLSHNNLSDS 140
            L+ L L+  NL  +
Sbjct: 104 NLEVLTLTQCNLDGA 118

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL-----LQNLD 131
           F   ++L  +NL  N L  SI  ++  +L KL+ L+L + ++  +G         L+ L 
Sbjct: 319 FWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377

Query: 132 LSHNNLS 138
           L  N L 
Sbjct: 378 LDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL-----LQNLD 131
           FS F++L+ + L  N+++  I       L  L  LNL    L  I   +      L+ LD
Sbjct: 295 FSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353

Query: 132 LSHNNLS 138
           LS+N++ 
Sbjct: 354 LSYNHIR 360

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 7/83 (8%)

Query: 62  IELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI 121
           + L  C           + F NL++++L N  L  S+   +  L KLK L L    +   
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGG 86

Query: 122 GKILL-----LQNLDLSHNNLSD 139
             +L      L +L+LS N L D
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKD 109

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 6/69 (8%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLR------WKNLTEIGKILLLQNL 130
           N      L+ + L  N + G +      L  L +LNL          L  + K+  L++L
Sbjct: 66  NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125

Query: 131 DLSHNNLSD 139
           DL +  +++
Sbjct: 126 DLFNCEVTN 134

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRW---KNLTEIGKILLLQNLDLS 133
                  L+ + L NN ++  I   +  L KL  L+L      ++  +  +  LQNL LS
Sbjct: 129 GLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 186

Query: 134 HNNLSD 139
            N++SD
Sbjct: 187 KNHISD 192

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNL---DLS 133
           +   F+     NL    ++ ++      L  +  +     ++  +  I  L N+    L+
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLN 76

Query: 134 HNNLSD 139
            N L+D
Sbjct: 77  GNKLTD 82

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNL---DLS 133
             +   NL ++ L  N +   +   +  L KLK L+L    +++I  ++ L  L    L 
Sbjct: 85  PLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG 142

Query: 134 HNNLSD 139
           +N ++D
Sbjct: 143 NNKITD 148

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNL---DLS 133
             +  +++  I   N+D+  S+   I  L  +  L L    LT+I  +  L+NL    L 
Sbjct: 41  TQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLD 98

Query: 134 HNNLSD 139
            N + D
Sbjct: 99  ENKVKD 104

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL----- 126
              S +    ++L+Y++L  N +  ++      L +L++L+ +  NL ++ +  +     
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126

Query: 127 -LQNLDLSHNNLS 138
            L  LD+SH +  
Sbjct: 127 NLIYLDISHTHTR 139

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL-----LQNLD 131
           F+  S+L+ + +  N    +  P I   L  L +L+L    L ++          LQ L+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 132 LSHNNLS 138
           +SHNN  
Sbjct: 206 MSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQ--IGSLLKLKYLNLRWKNLTEIGKILL-----LQN 129
           NF     L++++  +++L   +       SL  L YL++   +       +      L+ 
Sbjct: 96  NFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154

Query: 130 LDLSHNNLSDS 140
           L ++ N+  ++
Sbjct: 155 LKMAGNSFQEN 165

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL-----LQNLD 131
           F+   NL +++L    L   + P    SL  L+ LN+   N   +          LQ LD
Sbjct: 171 FTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229

Query: 132 LSHNNLS 138
            S N++ 
Sbjct: 230 YSLNHIM 236

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 7/73 (9%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL---- 126
            + +  F    +L+ + L  N +   I       L  L  L L    LT I         
Sbjct: 89  MIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147

Query: 127 -LQNLDLSHNNLS 138
            L+ L L +N + 
Sbjct: 148 KLRELWLRNNPIE 160

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNL-RWKNLTEIGKILL-----LQNL 130
           F   S L+ + L NN +  SIP      +  L  L+L   K L  I +        L+ L
Sbjct: 143 FEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201

Query: 131 DLSHNNLSD 139
           +L   N+ D
Sbjct: 202 NLGMCNIKD 210

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 7e-05
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-------LQNL 130
            S  S   +++  NN L+ ++    G L +L+ L L+   L E+ KI         LQ L
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379

Query: 131 DLSHNNLSDS 140
           D+S N++S  
Sbjct: 380 DISQNSVSYD 389

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEI--GKILLLQ 128
           EL + +    S L+ + + +N +   +   +     +L+YL+L    L +I     + L+
Sbjct: 35  ELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLK 93

Query: 129 NLDLSHNNLSD 139
           +LDLS N    
Sbjct: 94  HLDLSFNAFDA 104

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 10/76 (13%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIG---SLLKLKYLNLRWKNLTEIGKILL------L 127
           N    + L+ + L  N L   +         +  L+ L++   +++   K         L
Sbjct: 343 NCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 128 QNLDLSHNNLSDSQFR 143
            +L++S N L+D+ FR
Sbjct: 402 LSLNMSSNILTDTIFR 417

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEI--GKILLLQ 128
           EL   + S  S L+ + L +N +  S+   +      L+YL++    L  I    +  L+
Sbjct: 66  ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLR 124

Query: 129 NLDLSHNNLSD 139
           +LDLS N+   
Sbjct: 125 HLDLSFNDFDV 135

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 10/76 (13%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKIL---------LL 127
             S    LQ + L  N L  +          +  L     +L  +              +
Sbjct: 372 GCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430

Query: 128 QNLDLSHNNLSDSQFR 143
             L+LS N L+ S FR
Sbjct: 431 LVLNLSSNMLTGSVFR 446

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 7/73 (9%)

Query: 72  ELGSLNFSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL---- 126
            +   +F    +L+ + L  N +  +I       L  L  L L    LT I         
Sbjct: 78  IIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136

Query: 127 -LQNLDLSHNNLS 138
            L+ L L +N + 
Sbjct: 137 KLKELWLRNNPIE 149

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNL-RWKNLTEIGKILL-----LQNL 130
           F   S L+ + L NN +  SIP      +  L+ L+L   K L+ I +        L+ L
Sbjct: 132 FVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190

Query: 131 DLSHNNLSD 139
           +L+  NL +
Sbjct: 191 NLAMCNLRE 199

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 79  SCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-----LQNLDLS 133
           +       I+  +N++   +      L +LK L +    +  IG+ L      L  L L+
Sbjct: 39  ATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96

Query: 134 HNNLSD 139
           +N+L +
Sbjct: 97  NNSLVE 102

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 31/166 (18%), Positives = 57/166 (34%), Gaps = 44/166 (26%)

Query: 22  LLIV-HVAASENRKT--SFTQQ-R-LVEGQDSSQCFRSLQLGWYHIELVECSI---KGEL 73
           LL++ +V   +N K   +F    + L+  +              HI L   S+     E+
Sbjct: 247 LLVLLNV---QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 74  GSLNFSCFSNLQYINLWNNDLSGSIPPQI--GSLL-------KLKYLNLRWKNLTEIGKI 124
            SL         Y++    DL    P ++   +          ++     W N   +   
Sbjct: 304 KSL----LLK--YLDCRPQDL----PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 125 LLLQNLDLSHNNLSDSQFR--------FV----IPYLRLSVQCVWT 158
            L   ++ S N L  +++R        F     IP + LS+  +W 
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL--IWF 397

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEI-----GKILLLQNLD 131
           FS +  L+ I+L NN +S  + P     L  L  L L    +TE+       +  LQ L 
Sbjct: 52  FSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110

Query: 132 LSHNNLS 138
           L+ N ++
Sbjct: 111 LNANKIN 117

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL-----LQNLD 131
           F+  + L+ + +  +DL  S  P+   S+  + +L L  K    + +I +     ++ L+
Sbjct: 170 FAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 132 LSHNNLSDSQFR 143
           L   +L    F 
Sbjct: 229 LRDTDLDTFHFS 240

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 7/67 (10%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEIGKILL-----LQNLD 131
           F     L  ++L    L   + P +   L  L+YL L+   L  +          L +L 
Sbjct: 101 FHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159

Query: 132 LSHNNLS 138
           L  N +S
Sbjct: 160 LHGNRIS 166

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 14/90 (15%)

Query: 53  RSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLN 112
           + L L   +IE +           + S   NL+ ++L  N +   I         L+ L 
Sbjct: 51  KHLALSTNNIEKIS----------SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW 99

Query: 113 LRW---KNLTEIGKILLLQNLDLSHNNLSD 139
           + +    +L+ I K++ L+ L +S+N +++
Sbjct: 100 ISYNQIASLSGIEKLVNLRVLYMSNNKITN 129

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNL-RWKNLTEIGKILL-----LQNL 130
           FS F +L+ I +  ND+   I   +  +L KL  + + +  NL  I          LQ L
Sbjct: 50  FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109

Query: 131 DLSHNNLS 138
            +S+  + 
Sbjct: 110 LISNTGIK 117

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 78  FSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLTEI-----GKILLLQNLD 131
                 LQ + L  N+L  ++PP +     KL+ L+L   NLTE+       +  L  L 
Sbjct: 120 LRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 132 LSHNNLS 138
           L  N+L 
Sbjct: 179 LQENSLY 185

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 37.8 bits (88), Expect = 9e-04
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 13/72 (18%)

Query: 82  SNLQYINLWNNDLSGSIPPQIGSLLK----LKYLNLRWKNLTEIGKILL---------LQ 128
             +  + L NN L+ +    +   L     + +L+L    L + G  LL         LQ
Sbjct: 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQ 214

Query: 129 NLDLSHNNLSDS 140
            L++++N   D+
Sbjct: 215 ELNVAYNGAGDT 226

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	165
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.79
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.79
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.75
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.75
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.75
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.75
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.75
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.73
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.73
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.73
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.72
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.72
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.72
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.72
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.72
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.71
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.71
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.71
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.71
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.7
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.7
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.7
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.7
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.69
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.68
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.68
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.68
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.68
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.67
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.66
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.66
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.65
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.65
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.65
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.65
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.64
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.64
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.63
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.63
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.63
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.63
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.63
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.62
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.62
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.62
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.62
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.61
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.61
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.61
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.61
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.61
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.6
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.6
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.6
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.6
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.59
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.59
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.58
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.58
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.58
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.58
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.58
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.57
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.56
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.56
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.55
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.55
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.54
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.53
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.52
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.51
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.5
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.49
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.48
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.48
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.41
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.39
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.38
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.37
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.37
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.36
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.35
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.32
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.3
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.28
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.26
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.2
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.17
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.1
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.99
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.92
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.88
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.8
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.76
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.66
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.61
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.52
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.47
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.43
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.39
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.38
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.31
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.3
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.19
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.95
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.84
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.76
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.69
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.62
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.55
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.52
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.34
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.26
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.1

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=6e-19  Score=127.91  Aligned_cols=113  Identities=16%  Similarity=0.150  Sum_probs=97.8

Q ss_pred             CchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CC
Q 038525           47 DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EI  121 (165)
Q Consensus        47 ~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~  121 (165)
                      +++..|..++ +|++|++++|.+++.. |..|.++++|++|++++|.+++..+..|..+++|++|++++|+++     .|
T Consensus        47 i~~~~~~~l~-~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~  124 (220)
T 2v9t_B           47 IPPGAFSPYK-KLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF  124 (220)
T ss_dssp             ECTTSSTTCT-TCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cCHhHhhCCC-CCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHc
Confidence            3555677777 8999999999999776 889999999999999999999555556788999999999999988     67


Q ss_pred             ccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          122 GKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       122 ~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      ..+++|+.|++++|.+++..+..|..+++|+.|++++|..
T Consensus       125 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            8889999999999999977777899999999999999974

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=1.2e-18  Score=126.40  Aligned_cols=110  Identities=20%  Similarity=0.104  Sum_probs=100.5

Q ss_pred             hhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccC
Q 038525           50 QCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKI  124 (165)
Q Consensus        50 ~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l  124 (165)
                      ..|..++ +|++|++++|.+++.. +..|..+++|++|++++|.+++..|..|..+++|++|++++|+++     .+..+
T Consensus        51 ~~~~~l~-~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  128 (220)
T 2v70_A           51 GIFKKLP-QLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL  128 (220)
T ss_dssp             CCGGGCT-TCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC
T ss_pred             hhhccCC-CCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC
Confidence            4477788 8999999999999665 778999999999999999999777778999999999999999998     68889


Q ss_pred             cCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          125 LLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       125 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      ++|+.|++++|.+++..|..|..+++|+.|++++|..
T Consensus       129 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            9999999999999988899999999999999999975

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.79  E-value=3.3e-18  Score=126.04  Aligned_cols=107  Identities=22%  Similarity=0.197  Sum_probs=52.0

Q ss_pred             hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcC
Q 038525           52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILL  126 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~  126 (165)
                      +..++ +|++|++++|.+++.. +..|..+++|++|++++|.+++..+..|..+++|++|++++|+++     .++.+++
T Consensus        79 ~~~l~-~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  156 (251)
T 3m19_A           79 FDDLT-ELGTLGLANNQLASLP-LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN  156 (251)
T ss_dssp             TTTCT-TCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hccCC-cCCEEECCCCcccccC-hhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence            33344 4445555555444332 344444555555555555554333333444555555555555544     2444555


Q ss_pred             CCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525          127 LQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       127 L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      |++|++++|++++..+..+..+++|+.|++++|+
T Consensus       157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence            5555555555554444445555555555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.79  E-value=3e-18  Score=126.25  Aligned_cols=116  Identities=20%  Similarity=0.142  Sum_probs=102.3

Q ss_pred             CCCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----
Q 038525           45 GQDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----  119 (165)
Q Consensus        45 ~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----  119 (165)
                      ..+++..+..++ +|++|++++|.+++.. +..|..+++|++|++++|.+++..+..|..+++|++|++++|+++     
T Consensus        48 ~~~~~~~~~~l~-~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  125 (251)
T 3m19_A           48 ATLSDATFRGLT-KLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG  125 (251)
T ss_dssp             CCCCTTTTTTCT-TCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CccCHhHhcCcc-cCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChh
Confidence            334555677888 8999999999999766 888999999999999999999777778899999999999999998     


Q ss_pred             CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          120 EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       120 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      .+..+++|+.|++++|.+++..+..|..+++|++|++++|+..
T Consensus       126 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A          126 VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            4788999999999999999777778999999999999999863

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.78  E-value=2.9e-18  Score=121.77  Aligned_cols=103  Identities=17%  Similarity=0.067  Sum_probs=94.9

Q ss_pred             CeeEEEeecCCCCcccCCc-ccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEe
Q 038525           58 GWYHIELVECSIKGELGSL-NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLD  131 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~-~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~  131 (165)
                      ++++|++++|.+.+.. +. .|+.+++|++|++++|.+++..|..|..+++|++|++++|+++     .+.++++|++|+
T Consensus        30 ~l~~L~l~~n~i~~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           30 HTTELLLNDNELGRIS-SDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCCCCSBC-CSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCccC-CccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            5679999999998654 43 4899999999999999999888999999999999999999998     588999999999


Q ss_pred             ccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          132 LSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       132 ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      +++|++++..|..+..+++|++|++++|..
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            999999988899999999999999999975

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=6.5e-18  Score=123.09  Aligned_cols=113  Identities=19%  Similarity=0.157  Sum_probs=90.8

Q ss_pred             CchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCc
Q 038525           47 DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIG  122 (165)
Q Consensus        47 ~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~  122 (165)
                      +++..|..++ +|++|++++|++.+.. +..|..+++|++|++++|.+++..+..|..+++|++|++++|+++    .+.
T Consensus        55 ~~~~~~~~l~-~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~  132 (229)
T 3e6j_A           55 LEPGVFDSLI-NLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIE  132 (229)
T ss_dssp             CCTTTTTTCT-TCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGG
T ss_pred             cCHHHhhCcc-CCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccc
Confidence            3455567777 7888999999887443 666788888999999999888666666788888999999988887    567


Q ss_pred             cCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          123 KILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       123 ~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      .+++|++|++++|++++..+..+..+++|+.|++++|..
T Consensus       133 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            888899999999998866666788888999999988874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=8.3e-18  Score=120.46  Aligned_cols=115  Identities=20%  Similarity=0.163  Sum_probs=98.9

Q ss_pred             CCCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----
Q 038525           45 GQDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----  119 (165)
Q Consensus        45 ~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----  119 (165)
                      ..++...+..++ +|++|++++|++++.. +..|..+++|++|++++|.+++..+..|..+++|++|++++|+++     
T Consensus        41 ~~~~~~~~~~l~-~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  118 (208)
T 2o6s_A           41 KSLPNGVFDELT-SLTQLYLGGNKLQSLP-NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDG  118 (208)
T ss_dssp             CCCCTTTTTTCT-TCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CcCChhhhcccc-cCcEEECCCCccCccC-hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHh
Confidence            344566677778 8999999999999554 667899999999999999999666666889999999999999998     


Q ss_pred             CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          120 EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       120 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      .+..+++|++|++++|.+++..+..+..+++|+.|++++|..
T Consensus       119 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A          119 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence            478899999999999999977666789999999999999964

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=6.1e-18  Score=122.58  Aligned_cols=104  Identities=23%  Similarity=0.200  Sum_probs=96.7

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL  132 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l  132 (165)
                      ++++|++++|.+++.. +..|..+++|++|++++|.+++..|..|..+++|++|++++|+++     .|.++++|+.|++
T Consensus        33 ~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            6779999999999665 778999999999999999999888999999999999999999998     4788999999999


Q ss_pred             cCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          133 SHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       133 s~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      ++|.+++..|..|..+++|++|++++|+..
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  141 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQ  141 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence            999999888999999999999999999864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.76  E-value=1.8e-17  Score=123.46  Aligned_cols=109  Identities=23%  Similarity=0.252  Sum_probs=65.4

Q ss_pred             hhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccC
Q 038525           50 QCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKI  124 (165)
Q Consensus        50 ~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l  124 (165)
                      ..+..++ +|++|++++|.+++.. +..|..+++|++|++++|.+++..|..++.+++|+.|++++|+++     .++.+
T Consensus       103 ~~~~~l~-~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  180 (272)
T 3rfs_A          103 GVFDKLT-NLKELVLVENQLQSLP-DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL  180 (272)
T ss_dssp             TTTTTCT-TCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             hHhcCCc-CCCEEECCCCcCCccC-HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC
Confidence            3344455 5666666666666443 445566666666666666666444444556666666666666665     24556


Q ss_pred             cCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525          125 LLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       125 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      ++|++|++++|.+++..|..+..+++|++|++++|+
T Consensus       181 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          181 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence            666666666666665555556666666666666665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.76  E-value=4.2e-18  Score=138.90  Aligned_cols=112  Identities=20%  Similarity=0.208  Sum_probs=70.2

Q ss_pred             chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCc
Q 038525           48 SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIG  122 (165)
Q Consensus        48 ~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~  122 (165)
                      ++..|..++ +|++|++++|++++.. |..|.++++|++|+|++|++++..+..|.++++|++|++++|+++     .|+
T Consensus        68 ~~~~f~~l~-~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~  145 (635)
T 4g8a_A           68 GSYSFFSFP-ELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG  145 (635)
T ss_dssp             CTTTTTTCT-TCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCT
T ss_pred             CHHHHhCCC-CCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhh
Confidence            444566666 6666666666666443 556666666666666666666444455666666666666666665     356


Q ss_pred             cCcCCCEEeccCCCCCC-cccccccCCCCCcEEEccCCcc
Q 038525          123 KILLLQNLDLSHNNLSD-SQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       123 ~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      ++++|++|++++|.+++ ..|..+..+++|++|++++|+.
T Consensus       146 ~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          146 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             cCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence            66666666666666654 3455666666666666666654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.75  E-value=6.1e-18  Score=137.97  Aligned_cols=108  Identities=19%  Similarity=0.088  Sum_probs=97.4

Q ss_pred             ccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCC
Q 038525           54 SLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQ  128 (165)
Q Consensus        54 ~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~  128 (165)
                      .+|.++++|++++|++++.. +..|.++++|++|++++|+|++..|..|.++++|++|++++|+++     .|.++++|+
T Consensus        49 ~lp~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~  127 (635)
T 4g8a_A           49 NLPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ  127 (635)
T ss_dssp             SSCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred             CCCcCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence            44557889999999999655 789999999999999999999777778999999999999999998     588999999


Q ss_pred             EEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          129 NLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       129 ~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      +|++++|++++..+..|.++++|++|++++|+..
T Consensus       128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~  161 (635)
T 4g8a_A          128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ  161 (635)
T ss_dssp             EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCcCCCCChhhhhcCcccCeeccccCccc
Confidence            9999999999777778999999999999999863

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.75  E-value=2.6e-17  Score=123.13  Aligned_cols=111  Identities=19%  Similarity=0.189  Sum_probs=66.7

Q ss_pred             hhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCcc
Q 038525           49 SQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGK  123 (165)
Q Consensus        49 ~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~  123 (165)
                      +..+..++ +|++|++++|.+.+.. |..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++     .+..
T Consensus        98 ~~~~~~l~-~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  175 (285)
T 1ozn_A           98 PATFHGLG-RLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG  175 (285)
T ss_dssp             TTTTTTCT-TCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             HHHhcCCc-CCCEEECCCCcCCEEC-HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC
Confidence            33445555 5666666666666444 555666666666666666666444444566666666666666665     3555


Q ss_pred             CcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          124 ILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       124 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      +++|+.|++++|.+++..|..+..+++|+.|++++|+.
T Consensus       176 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  213 (285)
T 1ozn_A          176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL  213 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC
Confidence            66666666666666655566666666666666666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.75  E-value=3.3e-17  Score=121.88  Aligned_cols=110  Identities=22%  Similarity=0.219  Sum_probs=54.4

Q ss_pred             hhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCcc
Q 038525           49 SQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGK  123 (165)
Q Consensus        49 ~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~  123 (165)
                      ...|..++ +|++|++++|.+.+.. +..|..+++|++|++++|.+++..|..|..+++|++|++++|.++     .+..
T Consensus        78 ~~~~~~l~-~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  155 (270)
T 2o6q_A           78 AGIFKELK-NLETLWVTDNKLQALP-IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK  155 (270)
T ss_dssp             TTTTSSCT-TCCEEECCSSCCCCCC-TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             hhhhcCCC-CCCEEECCCCcCCcCC-HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC
Confidence            33344444 4555555555555332 444455555555555555555444444455555555555555544     2444


Q ss_pred             CcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525          124 ILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       124 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      +++|+.|++++|.+++..+..|..+++|++|++++|+
T Consensus       156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ  192 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence            4555555555555544333344445555555555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.75  E-value=1.8e-17  Score=117.96  Aligned_cols=102  Identities=19%  Similarity=0.129  Sum_probs=93.9

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL  132 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l  132 (165)
                      ++++|++++|.++ .+ |..|..+++|++|++++|.+++..+..|..+++|++|++++|+++     .|..+++|+.|++
T Consensus        32 ~l~~L~L~~n~i~-~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TCCEEECCSSCCC-SC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCc-hh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            6779999999998 78 889999999999999999999777888999999999999999998     5889999999999


Q ss_pred             cCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          133 SHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       133 s~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      ++|.+++..+..|..+++|+.|++++|..
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            99999966666799999999999999974

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.75  E-value=4.2e-18  Score=143.16  Aligned_cols=81  Identities=28%  Similarity=0.339  Sum_probs=61.1

Q ss_pred             CCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEE
Q 038525           81 FSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQC  155 (165)
Q Consensus        81 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~  155 (165)
                      +++|++||+++|+++|.+|.+++.++.|+.|++++|+++     .++.+++|+.||+++|+++|.+|+.+..+++|++|+
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  710 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID  710 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence            455667777777777777777777777777777777776     567777777777777777777777777777777888


Q ss_pred             ccCCcc
Q 038525          156 VWTCHS  161 (165)
Q Consensus       156 l~~n~~  161 (165)
                      +++|+.
T Consensus       711 ls~N~l  716 (768)
T 3rgz_A          711 LSNNNL  716 (768)
T ss_dssp             CCSSEE
T ss_pred             CcCCcc
Confidence            777764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=1.5e-17  Score=120.55  Aligned_cols=105  Identities=14%  Similarity=0.056  Sum_probs=95.0

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL  132 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l  132 (165)
                      .+++|++++|.+++..++..|..+++|++|++++|.+++..|..|..+++|++|++++|.++     .|..+++|++|++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            45699999999997652356899999999999999999777778999999999999999998     4889999999999


Q ss_pred             cCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          133 SHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       133 s~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      ++|.+++..|..|..+++|++|++++|+..
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  142 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDNQIT  142 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence            999999888999999999999999999864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.75  E-value=4.2e-17  Score=121.48  Aligned_cols=127  Identities=20%  Similarity=0.165  Sum_probs=101.5

Q ss_pred             cccccccccccCCCch-hhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 038525           34 KTSFTQQRLVEGQDSS-QCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLN  112 (165)
Q Consensus        34 l~~l~~~~~~~~~~~~-~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~  112 (165)
                      +++|..+++..+.+.. ..+..++ +|++|++++|.+++.. +..|..+++|++|++++|.+++..|..|+.+++|++|+
T Consensus        62 l~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  139 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHDISALKELT-NLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN  139 (272)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTCT-TCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEECCCCCCCCchhhcCCC-CCCEEECCCCccCccC-hhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence            4445555554444422 2456667 7889999999998655 77788999999999999999976677788899999999


Q ss_pred             cCCCCCC-----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          113 LRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       113 ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      +++|.++     .++.+++|+.|++++|++++..|..+..+++|++|++++|+..
T Consensus       140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            9999887     3678899999999999999777777889999999999998753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.75  E-value=4.7e-17  Score=113.82  Aligned_cols=103  Identities=19%  Similarity=0.133  Sum_probs=91.6

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL  132 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l  132 (165)
                      ++++|++++|++.+.. +..|..+++|++|++++|.+++..+..|..+++|++|++++|.++     .+..+++|++|++
T Consensus        29 ~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           29 SATRLELESNKLQSLP-HGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEeCCCcccEeC-HHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            6779999999999655 777899999999999999999666667899999999999999998     4688999999999


Q ss_pred             cCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          133 SHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       133 s~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      ++|.+++..+..+..+++|++|++++|+.
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            99999976666678899999999999975

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=3.9e-17  Score=118.94  Aligned_cols=103  Identities=20%  Similarity=0.131  Sum_probs=94.4

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL  132 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l  132 (165)
                      ++++|++++|.+.+.. |..|..+++|++|++++|.+++..+..|..+++|++|++++|+++     .+..+++|+.|++
T Consensus        41 ~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           41 NAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            6779999999999877 889999999999999999998555567899999999999999998     4788999999999


Q ss_pred             cCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          133 SHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       133 s~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      ++|+++ .+|..+..+++|++|++++|+..
T Consensus       120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A          120 CCNKLT-ELPRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             CSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred             cCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence            999998 78999999999999999999864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.73  E-value=1.9e-17  Score=126.65  Aligned_cols=38  Identities=16%  Similarity=-0.015  Sum_probs=15.9

Q ss_pred             ccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCC
Q 038525          122 GKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTC  159 (165)
Q Consensus       122 ~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n  159 (165)
                      +.+++|+.|++++|.+.+.+|..+.++++|++|++++|
T Consensus       250 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC  287 (328)
T ss_dssp             TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred             cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence            33344444444444444444444444444444444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.73  E-value=9.1e-17  Score=119.47  Aligned_cols=127  Identities=18%  Similarity=0.164  Sum_probs=107.0

Q ss_pred             ccccccccccccCC---CchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCC
Q 038525           33 RKTSFTQQRLVEGQ---DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLK  109 (165)
Q Consensus        33 ~l~~l~~~~~~~~~---~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~  109 (165)
                      .+++|..+++..+.   ++...+..++ +|++|++++|.+.+.. +..|..+++|++|++++|.+++..+..|..+++|+
T Consensus        83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  160 (270)
T 2o6q_A           83 ELKNLETLWVTDNKLQALPIGVFDQLV-NLAELRLDRNQLKSLP-PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK  160 (270)
T ss_dssp             SCTTCCEEECCSSCCCCCCTTTTTTCS-SCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCCCEEECCCCcCCcCCHhHccccc-CCCEEECCCCccCeeC-HHHhCcCcCCCEEECCCCcCCccCHhHccCCcccc
Confidence            34555555554433   4556677788 8999999999999666 78899999999999999999966666689999999


Q ss_pred             EEEcCCCCCC-----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          110 YLNLRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       110 ~L~ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      .|++++|+++     .+..+++|++|++++|.+++..+..+..+++|+.|++++|..
T Consensus       161 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             eeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            9999999998     478899999999999999976666789999999999999974

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.73  E-value=4.1e-17  Score=121.49  Aligned_cols=124  Identities=19%  Similarity=0.159  Sum_probs=100.7

Q ss_pred             ccccccccCCC---chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEc
Q 038525           37 FTQQRLVEGQD---SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL  113 (165)
Q Consensus        37 l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l  113 (165)
                      +...++..+.+   +...+..++ +|++|++++|.+.+.. +..|..+++|++|++++|.+++..|..|..+++|++|++
T Consensus        30 l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           30 TKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            44444443333   444567777 8889999999998655 778899999999999999998777788899999999999


Q ss_pred             CCCCCC-----CCccCcCCCEEeccCCCCCCc-ccccccCCCCCcEEEccCCccC
Q 038525          114 RWKNLT-----EIGKILLLQNLDLSHNNLSDS-QFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       114 s~n~l~-----~~~~l~~L~~L~ls~N~l~~~-~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      ++|.++     .++.+++|++|++++|.+++. +|..+..+++|++|++++|+..
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            999887     578889999999999999763 6888999999999999998753

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.72  E-value=1.2e-16  Score=119.45  Aligned_cols=127  Identities=18%  Similarity=0.131  Sum_probs=79.8

Q ss_pred             ccccccccccccCCC---chhhhhccccCeeEEEeecCC-CCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCC
Q 038525           33 RKTSFTQQRLVEGQD---SSQCFRSLQLGWYHIELVECS-IKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKL  108 (165)
Q Consensus        33 ~l~~l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~-l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L  108 (165)
                      .++.|..+++..+.+   .+..+..++ +|++|++++|. +.... |..|..+++|++|++++|.+++..|..+..+++|
T Consensus        54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  131 (285)
T 1ozn_A           54 ACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL  131 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             cCCCCCEEECCCCccceeCHhhcCCcc-CCCEEeCCCCCCccccC-HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence            334444444443333   233455555 66677777775 55433 5666667777777777777765556666667777


Q ss_pred             CEEEcCCCCCC-----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          109 KYLNLRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       109 ~~L~ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      ++|++++|+++     .++.+++|+.|++++|.+++..+..+..+++|+.|++++|+.
T Consensus       132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence            77777777666     356677777777777777654444567777777777777764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.72  E-value=5.3e-18  Score=128.84  Aligned_cols=109  Identities=14%  Similarity=0.225  Sum_probs=75.3

Q ss_pred             hhhccccCeeEEEeec-CCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccC
Q 038525           51 CFRSLQLGWYHIELVE-CSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKI  124 (165)
Q Consensus        51 ~~~~l~~~L~~L~ls~-n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l  124 (165)
                      .+..++ +|++|++++ |.+.+.+ |..|+.+++|++|++++|.+++.+|..|..+++|++|++++|.++     .+..+
T Consensus        71 ~l~~l~-~L~~L~L~~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  148 (313)
T 1ogq_A           71 SLANLP-YLNFLYIGGINNLVGPI-PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL  148 (313)
T ss_dssp             GGGGCT-TCSEEEEEEETTEESCC-CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred             hHhCCC-CCCeeeCCCCCcccccC-ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence            455566 677777773 6676666 667777777777777777776667777777777777777777665     45666


Q ss_pred             cCCCEEeccCCCCCCcccccccCCC-CCcEEEccCCcc
Q 038525          125 LLLQNLDLSHNNLSDSQFRFVIPYL-RLSVQCVWTCHS  161 (165)
Q Consensus       125 ~~L~~L~ls~N~l~~~~p~~~~~l~-~L~~L~l~~n~~  161 (165)
                      ++|++|++++|.+++.+|..+..++ +|++|++++|+.
T Consensus       149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence            7777777777777666677777666 677777776654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.72  E-value=6e-18  Score=128.55  Aligned_cols=105  Identities=19%  Similarity=0.249  Sum_probs=59.0

Q ss_pred             hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCc-
Q 038525           52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKIL-  125 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~-  125 (165)
                      +..++ +|++|++++|.+.+.+ |..|..+++|++|++++|.+++.+|..+..+++|++|++++|+++     .+..++ 
T Consensus        97 l~~l~-~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  174 (313)
T 1ogq_A           97 IAKLT-QLHYLYITHTNVSGAI-PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK  174 (313)
T ss_dssp             GGGCT-TCSEEEEEEECCEEEC-CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCT
T ss_pred             HhcCC-CCCEEECcCCeeCCcC-CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhh
Confidence            45555 5666666666666555 666666666666666666666566666666666666666666654     344444 


Q ss_pred             CCCEEeccCCCCCCcccccccCCCCCcEEEccCC
Q 038525          126 LLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTC  159 (165)
Q Consensus       126 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n  159 (165)
                      +|+.|++++|.+++.+|..+..+. |++|++++|
T Consensus       175 ~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             TCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             cCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            455555555555444444444443 444444444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.72  E-value=5.2e-17  Score=132.67  Aligned_cols=125  Identities=18%  Similarity=0.178  Sum_probs=107.3

Q ss_pred             cccccccccCC---CchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 038525           36 SFTQQRLVEGQ---DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLN  112 (165)
Q Consensus        36 ~l~~~~~~~~~---~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~  112 (165)
                      ++...++..+.   +++..|..++ +|++|++++|.+++.. |..|+++++|++|++++|.+++..|..|+.+++|++|+
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~i~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFS-ELQWLDLSRCEIETIE-DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CcCEEECCCCCcCEeChhhccCCc-cCcEEeCCCCcccccC-HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            34444444443   3555678888 8999999999999776 88899999999999999999988899999999999999


Q ss_pred             cCCCCCC-----CCccCcCCCEEeccCCCCCC-cccccccCCCCCcEEEccCCccC
Q 038525          113 LRWKNLT-----EIGKILLLQNLDLSHNNLSD-SQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       113 ls~n~l~-----~~~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      +++|.++     .++++++|++|++++|.+++ .+|..+.++++|++|++++|+..
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence            9999987     68899999999999999986 57999999999999999999753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=3.1e-17  Score=116.71  Aligned_cols=107  Identities=14%  Similarity=0.253  Sum_probs=69.1

Q ss_pred             hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCC-CC---CCccCcC
Q 038525           51 CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKN-LT---EIGKILL  126 (165)
Q Consensus        51 ~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~-l~---~~~~l~~  126 (165)
                      .+..++ +|++|++++|.+.+.. +..++.+++|++|++++|.+++..|..++.+++|++|++++|+ ++   .+..+++
T Consensus        83 ~l~~l~-~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~  160 (197)
T 4ezg_A           83 PISGLS-NLERLRIMGKDVTSDK-IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE  160 (197)
T ss_dssp             GGTTCT-TCCEEEEECTTCBGGG-SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSS
T ss_pred             hhhcCC-CCCEEEeECCccCccc-ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCC
Confidence            344555 6667777777766555 6666667777777777777665556666667777777777776 55   4566666


Q ss_pred             CCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          127 LQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       127 L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      |+.|++++|.+++ ++ .+..+++|+.|++++|+.
T Consensus       161 L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          161 LKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred             CCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence            7777777777763 33 566677777777777664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.72  E-value=1.2e-16  Score=120.38  Aligned_cols=101  Identities=18%  Similarity=0.142  Sum_probs=51.8

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL  132 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l  132 (165)
                      +|++|++++|.+. .+ |..+..+++|++|++++|++++..|..|..+++|++|++++|+++     .+..+++|+.|++
T Consensus        78 ~L~~L~Ls~N~l~-~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  155 (290)
T 1p9a_G           78 VLGTLDLSHNQLQ-SL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL  155 (290)
T ss_dssp             TCCEEECCSSCCS-SC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCEEECCCCcCC-cC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence            4445555555554 34 444555555555555555555444444555555555555555554     2344555555555


Q ss_pred             cCCCCCCcccccccCCCCCcEEEccCCc
Q 038525          133 SHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       133 s~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      ++|++++..+..|..+++|++|++++|+
T Consensus       156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          156 ANNNLTELPAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             TTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCcCCccCHHHhcCcCCCCEEECCCCc
Confidence            5555553333344455555555555554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.72  E-value=4.2e-17  Score=124.71  Aligned_cols=128  Identities=20%  Similarity=0.217  Sum_probs=74.6

Q ss_pred             CCccccccccccccCCCc--hhhhhccccCeeEEEeecCCCCcccCCcccCC---------CCCCcEEEcccCcCCCCCC
Q 038525           31 ENRKTSFTQQRLVEGQDS--SQCFRSLQLGWYHIELVECSIKGELGSLNFSC---------FSNLQYINLWNNDLSGSIP   99 (165)
Q Consensus        31 ~~~l~~l~~~~~~~~~~~--~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~---------l~~L~~L~ls~N~l~~~~p   99 (165)
                      ...+++|..+++..+.+.  +..+..++ +|++|++++|.+.+.+ |..+..         +++|++|++++|.++ .+|
T Consensus       123 ~~~l~~L~~L~Ls~n~l~~lp~~l~~l~-~L~~L~L~~n~~~~~~-p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp  199 (328)
T 4fcg_A          123 MQQFAGLETLTLARNPLRALPASIASLN-RLRELSIRACPELTEL-PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLP  199 (328)
T ss_dssp             GGGGTTCSEEEEESCCCCCCCGGGGGCT-TCCEEEEEEETTCCCC-CSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCC
T ss_pred             HhccCCCCEEECCCCccccCcHHHhcCc-CCCEEECCCCCCcccc-ChhHhhccchhhhccCCCCCEEECcCCCcC-cch
Confidence            344444444444333321  22244555 5666666666665555 555443         666666666666666 566


Q ss_pred             cCcCCCCCCCEEEcCCCCCC----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          100 PQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       100 ~~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      ..++.+++|++|++++|.++    .++.+++|++|++++|.+.+.+|..+..+++|++|++++|+.
T Consensus       200 ~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~  265 (328)
T 4fcg_A          200 ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN  265 (328)
T ss_dssp             GGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT
T ss_pred             HhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc
Confidence            66666666666666666665    455566666666666666666666666666666666666543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.71  E-value=6.5e-17  Score=125.87  Aligned_cols=117  Identities=16%  Similarity=0.079  Sum_probs=102.8

Q ss_pred             cCCCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----
Q 038525           44 EGQDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----  119 (165)
Q Consensus        44 ~~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----  119 (165)
                      ...+|...+..++ +|++|++++|.+.+.. +..|..+++|++|++++|.+++..|..|+.+++|++|++++|.++    
T Consensus        57 l~~l~~~~~~~l~-~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~  134 (390)
T 3o6n_A           57 MRKLPAALLDSFR-QVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR  134 (390)
T ss_dssp             ESEECTHHHHHCC-CCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             hhhCChhHhcccc-cCcEEECCCCcccccC-hhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH
Confidence            3446777788888 8999999999998655 778999999999999999999777888999999999999999988    


Q ss_pred             -CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          120 -EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       120 -~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                       .+..+++|++|++++|.+++..|..+..+++|++|++++|+..
T Consensus       135 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence             3688999999999999999877888999999999999999764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.71  E-value=5.4e-17  Score=128.30  Aligned_cols=124  Identities=18%  Similarity=0.127  Sum_probs=103.3

Q ss_pred             cccccccccCCC---chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 038525           36 SFTQQRLVEGQD---SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLN  112 (165)
Q Consensus        36 ~l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~  112 (165)
                      ++...++..+.+   ++..+..++ +|++|++++|.+.+.. |..|..+++|++|++++|.+++..|..+..+++|++|+
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKID-DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             CceEEEecCccccccchhhcccCC-CCCEEECCCCcccccC-hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence            344444444443   345567777 8999999999999776 88899999999999999999877788889999999999


Q ss_pred             cCCCCCC-----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          113 LRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       113 ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      +++|+++     .+..+++|++|++++|++++..+..+..+++|++|++++|+.
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence            9999988     678899999999999999976666788999999999999975

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.71  E-value=6.5e-17  Score=125.05  Aligned_cols=113  Identities=19%  Similarity=0.149  Sum_probs=89.3

Q ss_pred             chhhhh-ccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CC
Q 038525           48 SSQCFR-SLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EI  121 (165)
Q Consensus        48 ~~~~~~-~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~  121 (165)
                      +...+. .++ +|++|++++|++++.. +..|..+++|++|++++|.+++..+..|..+++|++|++++|+++     .|
T Consensus        55 ~~~~~~~~l~-~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~  132 (361)
T 2xot_A           55 RAEWTPTRLT-NLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF  132 (361)
T ss_dssp             CTTSSSSCCT-TCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             Chhhhhhccc-ccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh
Confidence            444455 666 7889999999988655 778889999999999999998666667888899999999999887     67


Q ss_pred             ccCcCCCEEeccCCCCCCcccccc---cCCCCCcEEEccCCccC
Q 038525          122 GKILLLQNLDLSHNNLSDSQFRFV---IPYLRLSVQCVWTCHST  162 (165)
Q Consensus       122 ~~l~~L~~L~ls~N~l~~~~p~~~---~~l~~L~~L~l~~n~~~  162 (165)
                      .++++|+.|++++|.+++..+..|   ..+++|+.|++++|+..
T Consensus       133 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          133 EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            888899999999999985444444   56888999999988764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.71  E-value=1.7e-16  Score=110.68  Aligned_cols=97  Identities=19%  Similarity=0.197  Sum_probs=64.6

Q ss_pred             EEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEeccCC
Q 038525           61 HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSHN  135 (165)
Q Consensus        61 ~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls~N  135 (165)
                      ++++++|.++ .+ |..+.  ++|++|++++|.+++..|..|..+++|++|++++|+++     .|..+++|++|++++|
T Consensus        13 ~l~~s~n~l~-~i-p~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           13 TVDCSGKSLA-SV-PTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             EEECTTSCCS-SC-CSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-cc-CccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            6677777766 45 54442  66777777777777555666667777777777777766     3566677777777777


Q ss_pred             CCCCcccccccCCCCCcEEEccCCcc
Q 038525          136 NLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       136 ~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      ++++..+..|..+++|++|++++|+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            77655555566777777777777753

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.71  E-value=9.1e-17  Score=127.00  Aligned_cols=125  Identities=18%  Similarity=0.102  Sum_probs=103.7

Q ss_pred             ccccccccCCC---chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEc
Q 038525           37 FTQQRLVEGQD---SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL  113 (165)
Q Consensus        37 l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l  113 (165)
                      ++.+++..+.+   ++..+..++ +|++|++++|.+.+.+++..|.++++|++|++++|.+++..|..|+.+++|++|++
T Consensus        32 l~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  110 (455)
T 3v47_A           32 VNYVDLSLNSIAELNETSFSRLQ-DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL  110 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTSSCT-TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred             cCEEEecCCccCcCChhHhccCc-cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence            44444444443   455677788 89999999999876664678999999999999999999778889999999999999


Q ss_pred             CCCCCC-------CCccCcCCCEEeccCCCCCCccccc-ccCCCCCcEEEccCCccC
Q 038525          114 RWKNLT-------EIGKILLLQNLDLSHNNLSDSQFRF-VIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       114 s~n~l~-------~~~~l~~L~~L~ls~N~l~~~~p~~-~~~l~~L~~L~l~~n~~~  162 (165)
                      ++|.++       .++.+++|++|++++|.+++..|.. +.++++|++|++++|+..
T Consensus       111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A          111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            999987       2888999999999999999877776 889999999999999753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.70  E-value=2.7e-16  Score=112.53  Aligned_cols=104  Identities=21%  Similarity=0.172  Sum_probs=92.9

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL  132 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l  132 (165)
                      ++++|++++|++++.. +..|..+++|++|++++|.+++..+..|..+++|++|++++|.++     .+..+++|++|++
T Consensus        29 ~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCccCcCC-hhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            6779999999999655 777899999999999999999666667889999999999999998     4788999999999


Q ss_pred             cCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          133 SHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       133 s~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      ++|.+++..+..+..+++|++|++++|+..
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence            999999777777899999999999999764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.70  E-value=9.8e-17  Score=120.99  Aligned_cols=110  Identities=22%  Similarity=0.217  Sum_probs=76.5

Q ss_pred             hhhhccccCeeEEEeecCCCCc-ccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCcc
Q 038525           50 QCFRSLQLGWYHIELVECSIKG-ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGK  123 (165)
Q Consensus        50 ~~~~~l~~~L~~L~ls~n~l~~-~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~  123 (165)
                      ..+..++ +|++|++++|.+.+ .. |..+..+++|++|++++|.+++..|..+..+++|+.|++++|+++     .+..
T Consensus       144 ~~~~~l~-~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  221 (306)
T 2z66_A          144 GIFNGLS-SLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC  221 (306)
T ss_dssp             TTTTTCT-TCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred             hhcccCc-CCCEEECCCCccccccc-hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence            3345555 66677777777664 34 666777777777777777777666667777777777777777766     4556


Q ss_pred             CcCCCEEeccCCCCCCcccccccCCC-CCcEEEccCCcc
Q 038525          124 ILLLQNLDLSHNNLSDSQFRFVIPYL-RLSVQCVWTCHS  161 (165)
Q Consensus       124 l~~L~~L~ls~N~l~~~~p~~~~~l~-~L~~L~l~~n~~  161 (165)
                      +++|+.|++++|.+++..|..+..++ +|++|++++|+.
T Consensus       222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            67777777777777777777777764 777777777764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.70  E-value=4.2e-17  Score=137.13  Aligned_cols=109  Identities=25%  Similarity=0.235  Sum_probs=75.3

Q ss_pred             hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCc
Q 038525           51 CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKIL  125 (165)
Q Consensus        51 ~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~  125 (165)
                      .+..++ +|++|++++|.+.+.+ |..+..+++|++|++++|.+++.+|..++.+++|++|++++|+++     .++.++
T Consensus       437 ~l~~l~-~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~  514 (768)
T 3rgz_A          437 SLGSLS-KLRDLKLWLNMLEGEI-PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE  514 (768)
T ss_dssp             GGGGCT-TCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             HHhcCC-CCCEEECCCCcccCcC-CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence            345555 6667777777766666 666666777777777777777666766777777777777777665     456667


Q ss_pred             CCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          126 LLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       126 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      +|++|++++|++++.+|..+..+++|++|++++|+.
T Consensus       515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            777777777777767777777777777777777754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.70  E-value=1e-16  Score=131.29  Aligned_cols=116  Identities=16%  Similarity=0.085  Sum_probs=103.9

Q ss_pred             CCCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----
Q 038525           45 GQDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----  119 (165)
Q Consensus        45 ~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----  119 (165)
                      +.+|+..+..++ +|++|++++|.+.+.. |..|+.+++|++|++++|.+++..|..|+.+++|++|++++|.++     
T Consensus        64 ~~lp~~~~~~l~-~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~  141 (597)
T 3oja_B           64 RKLPAALLDSFR-QVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG  141 (597)
T ss_dssp             SEECTHHHHHCC-CCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCcCHHHHccCC-CCcEEECCCCCCCCCC-hHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHH
Confidence            446777788888 8999999999999766 789999999999999999999888888899999999999999998     


Q ss_pred             CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          120 EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       120 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      .|+.+++|++|++++|.+++..|..|..+++|++|++++|+..
T Consensus       142 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence            3688999999999999999888888999999999999999754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.70  E-value=3.9e-16  Score=117.47  Aligned_cols=125  Identities=18%  Similarity=0.060  Sum_probs=103.5

Q ss_pred             cccccccccccCCCc--hhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEE
Q 038525           34 KTSFTQQRLVEGQDS--SQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYL  111 (165)
Q Consensus        34 l~~l~~~~~~~~~~~--~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L  111 (165)
                      +++|..+++..+.+.  +..+..++ +|++|++++|++++.. |..|..+++|++|++++|++++..+..|..+++|+.|
T Consensus        76 l~~L~~L~Ls~N~l~~l~~~~~~l~-~L~~L~l~~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  153 (290)
T 1p9a_G           76 LPVLGTLDLSHNQLQSLPLLGQTLP-ALTVLDVSFNRLTSLP-LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (290)
T ss_dssp             CTTCCEEECCSSCCSSCCCCTTTCT-TCCEEECCSSCCCCCC-SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcCCEEECCCCcCCcCchhhccCC-CCCEEECCCCcCcccC-HHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence            344444444444432  12345667 8999999999999665 7889999999999999999997666778899999999


Q ss_pred             EcCCCCCC-----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          112 NLRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       112 ~ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      ++++|+++     .+..+++|+.|++++|+++ .+|..+....+|+.+++++|..
T Consensus       154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence            99999998     4678999999999999998 7888888999999999999974

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=2e-16  Score=122.30  Aligned_cols=104  Identities=15%  Similarity=0.069  Sum_probs=95.1

Q ss_pred             CeeEEEeecCCCCcccCCcccC-CCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEe
Q 038525           58 GWYHIELVECSIKGELGSLNFS-CFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLD  131 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~-~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~  131 (165)
                      .+++|++++|.+++.. +..|. .+++|++|++++|++++..|..|..+++|++|++++|+++     .|..+++|+.|+
T Consensus        40 ~l~~L~Ls~N~l~~l~-~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           40 YTALLDLSHNNLSRLR-AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TCSEEECCSSCCCEEC-TTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCCCCccC-hhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            5679999999999665 77777 9999999999999999777788999999999999999998     588999999999


Q ss_pred             ccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          132 LSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       132 ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      +++|.+++..|..|.++++|+.|++++|+..
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence            9999999887899999999999999999864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.69  E-value=3.8e-16  Score=109.34  Aligned_cols=96  Identities=19%  Similarity=0.205  Sum_probs=57.8

Q ss_pred             EEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEeccCC
Q 038525           61 HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSHN  135 (165)
Q Consensus        61 ~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls~N  135 (165)
                      .+++++|.+. .+ |..+.  ++|++|++++|++++..|..|..+++|++|++++|+++     .|..+++|++|++++|
T Consensus        16 ~l~~~~n~l~-~i-P~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           16 LVNCQNIRLA-SV-PAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             EEECCSSCCS-SC-CSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCCC-cc-CCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            5666666665 45 44443  56666666666666555556666666666666666665     2455666666666666


Q ss_pred             CCCCcccccccCCCCCcEEEccCCc
Q 038525          136 NLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       136 ~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      ++++..+..|..+++|++|++++|+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCC
Confidence            6664444446666666666666665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.68  E-value=3.1e-16  Score=124.91  Aligned_cols=112  Identities=19%  Similarity=0.173  Sum_probs=77.7

Q ss_pred             chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCc
Q 038525           48 SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIG  122 (165)
Q Consensus        48 ~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~  122 (165)
                      ++..|..++ +|++|++++|.+.+.. |..|.++++|++|++++|.+++..+..|..+++|++|++++|+++     .+.
T Consensus        48 ~~~~~~~l~-~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~  125 (477)
T 2id5_A           48 NQDEFASFP-HLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ  125 (477)
T ss_dssp             CTTTTTTCT-TCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             CHhHccCCC-CCCEEECCCCccCEeC-hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcc
Confidence            344566666 6777777777777655 677777777777777777777444445677777777777777766     466


Q ss_pred             cCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          123 KILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       123 ~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      .+++|+.|++++|.+++..|..|.++++|+.|++++|+.
T Consensus       126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  164 (477)
T 2id5_A          126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL  164 (477)
T ss_dssp             TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred             ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence            677777777777777666666677777777777776654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.68  E-value=1.6e-16  Score=129.80  Aligned_cols=109  Identities=19%  Similarity=0.181  Sum_probs=73.4

Q ss_pred             hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCC-CCCcCcCCCCCCCEEEcCCCCCC-----CCccC
Q 038525           51 CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSG-SIPPQIGSLLKLKYLNLRWKNLT-----EIGKI  124 (165)
Q Consensus        51 ~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l  124 (165)
                      .+..++ +|++|++++|.+.+.. |..+..+++|++|++++|.+++ .+|..++.+++|+.|++++|+++     .+..+
T Consensus       419 ~~~~l~-~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  496 (606)
T 3vq2_A          419 AFLSLE-KLLYLDISYTNTKIDF-DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL  496 (606)
T ss_dssp             TTTTCT-TCCEEECTTSCCEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             hhhccc-cCCEEECcCCCCCccc-hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccc
Confidence            455555 6667777777776655 6666777777777777777665 25666666777777777777665     45666


Q ss_pred             cCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          125 LLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       125 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      ++|++|++++|++++..|..+..+++|+.|++++|+.
T Consensus       497 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l  533 (606)
T 3vq2_A          497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI  533 (606)
T ss_dssp             TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred             ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence            6777777777777666666666677777777776664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.68  E-value=2.2e-16  Score=119.05  Aligned_cols=111  Identities=21%  Similarity=0.211  Sum_probs=93.2

Q ss_pred             hhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCC-CCCcCcCCCCCCCEEEcCCCCCC-----CCcc
Q 038525           50 QCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSG-SIPPQIGSLLKLKYLNLRWKNLT-----EIGK  123 (165)
Q Consensus        50 ~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~ls~n~l~-----~~~~  123 (165)
                      ..+..++ +|++|++++|.+.+.. +..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.++     .+..
T Consensus       120 ~~~~~l~-~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  197 (306)
T 2z66_A          120 SVFLSLR-NLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS  197 (306)
T ss_dssp             TTTTTCT-TCCEEECTTSCCEECS-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             hhhhhcc-CCCEEECCCCcCCccc-hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC
Confidence            3466677 7889999999888776 7788889999999999998875 47888888999999999999887     5778


Q ss_pred             CcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          124 ILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       124 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      +++|+.|++++|.+++..+..+..+++|++|++++|+..
T Consensus       198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  236 (306)
T 2z66_A          198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM  236 (306)
T ss_dssp             CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred             CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence            889999999999998766667888999999999998763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.68  E-value=2.9e-16  Score=127.15  Aligned_cols=124  Identities=19%  Similarity=0.167  Sum_probs=104.5

Q ss_pred             ccccccccCCC---chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEc
Q 038525           37 FTQQRLVEGQD---SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL  113 (165)
Q Consensus        37 l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l  113 (165)
                      +...++..+.+   ++..|..++ +|++|++++|.+.+.. |..|+++++|++|++++|.+++..|..|+.+++|++|++
T Consensus        30 l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           30 TKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCS-SCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccEEEccCCccCccChhHhhCCC-CceEEECCCCcCCccC-cccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            34444444433   455677888 8999999999998665 788999999999999999999777788999999999999


Q ss_pred             CCCCCC-----CCccCcCCCEEeccCCCCCC-cccccccCCCCCcEEEccCCccC
Q 038525          114 RWKNLT-----EIGKILLLQNLDLSHNNLSD-SQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       114 s~n~l~-----~~~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      ++|.++     .++.+++|++|++++|.+++ .+|+.+.++++|++|++++|+..
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence            999987     58899999999999999986 46899999999999999999753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.67  E-value=3.5e-16  Score=127.07  Aligned_cols=103  Identities=18%  Similarity=0.127  Sum_probs=91.5

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC--CCccCcCCCEEeccCC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT--EIGKILLLQNLDLSHN  135 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~--~~~~l~~L~~L~ls~N  135 (165)
                      ++++|++++|.+.+.. |..|..+++|++|++++|.+++..|+.|..+++|++|++++|+++  .-..+++|++|++++|
T Consensus        53 ~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N  131 (562)
T 3a79_B           53 RTKALSLSQNSISELR-MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFN  131 (562)
T ss_dssp             TCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECCSS
T ss_pred             CcCEEECCCCCccccC-hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence            6779999999999665 789999999999999999999888889999999999999999998  2238899999999999


Q ss_pred             CCCC-cccccccCCCCCcEEEccCCcc
Q 038525          136 NLSD-SQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       136 ~l~~-~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      ++++ .+|..|.++++|++|++++|+.
T Consensus       132 ~l~~l~~p~~~~~l~~L~~L~L~~n~l  158 (562)
T 3a79_B          132 DFDVLPVCKEFGNLTKLTFLGLSAAKF  158 (562)
T ss_dssp             CCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred             CccccCchHhhcccCcccEEecCCCcc
Confidence            9986 3468899999999999999875

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=1.9e-16  Score=109.71  Aligned_cols=107  Identities=17%  Similarity=0.178  Sum_probs=91.8

Q ss_pred             hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccCc
Q 038525           52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKIL  125 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l~  125 (165)
                      +..++ +|++|++++|.+++.   ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.++      .+..++
T Consensus        45 ~~~l~-~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~  120 (168)
T 2ell_A           45 TAEFV-NLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE  120 (168)
T ss_dssp             CGGGG-GCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCS
T ss_pred             HHhCC-CCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCC
Confidence            56666 788999999998853   57889999999999999999778887778999999999999988      466789


Q ss_pred             CCCEEeccCCCCCCccc---ccccCCCCCcEEEccCCccC
Q 038525          126 LLQNLDLSHNNLSDSQF---RFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       126 ~L~~L~ls~N~l~~~~p---~~~~~l~~L~~L~l~~n~~~  162 (165)
                      +|+.|++++|.+++..+   ..+..+++|++|++++|+..
T Consensus       121 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          121 CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            99999999999986544   47889999999999998764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.67  E-value=6.5e-16  Score=127.78  Aligned_cols=113  Identities=19%  Similarity=0.113  Sum_probs=75.9

Q ss_pred             CchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CC
Q 038525           47 DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EI  121 (165)
Q Consensus        47 ~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~  121 (165)
                      +++..|..++ +|++|++++|.+.+.. |..|+.+++|++|++++|.+++..+..|+.+++|++|++++|.++     .+
T Consensus        40 ~~~~~~~~l~-~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  117 (680)
T 1ziw_A           40 LPAANFTRYS-QLTSLDVGFNTISKLE-PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF  117 (680)
T ss_dssp             CCGGGGGGGT-TCSEEECCSSCCCCCC-TTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTT
T ss_pred             cCHHHHhCCC-cCcEEECCCCccCccC-HHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHc
Confidence            4455566666 6777777777777555 666777777777777777776433345667777777777777665     46


Q ss_pred             ccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          122 GKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       122 ~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      +++++|++|++++|.+++..|..+.++++|++|++++|+.
T Consensus       118 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  157 (680)
T 1ziw_A          118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI  157 (680)
T ss_dssp             TTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred             cccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence            6667777777777777666666666777777777776653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=3.5e-16  Score=106.36  Aligned_cols=101  Identities=22%  Similarity=0.234  Sum_probs=51.8

Q ss_pred             CeeEEEeecCCCC-cccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEe
Q 038525           58 GWYHIELVECSIK-GELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLD  131 (165)
Q Consensus        58 ~L~~L~ls~n~l~-~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~  131 (165)
                      ++++|++++|.+. +.+ |..+..+++|++|++++|.+++.  ..++.+++|++|++++|.++     .++.+++|++|+
T Consensus        18 ~l~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKL-EGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GCSEEECTTCBCBTTBC-CSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             cCeEEEccCCcCChhHH-HHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            3445555555554 444 44555555555555555555533  44555555555555555554     223355555555


Q ss_pred             ccCCCCCCc-ccccccCCCCCcEEEccCCcc
Q 038525          132 LSHNNLSDS-QFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       132 ls~N~l~~~-~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      +++|.+++. .|..+..+++|++|++++|+.
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l  125 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEV  125 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence            555555532 224455555555555555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.66  E-value=5.8e-16  Score=115.25  Aligned_cols=119  Identities=20%  Similarity=0.145  Sum_probs=75.0

Q ss_pred             CCccccccccccccCCC---chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCC
Q 038525           31 ENRKTSFTQQRLVEGQD---SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLK  107 (165)
Q Consensus        31 ~~~l~~l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~  107 (165)
                      ...++.|+..++..+.+   +...+..++ +|++|++++|.+.+.. +..|..+++|++|++++|.+++..+..++.+++
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  125 (276)
T 2z62_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  125 (276)
T ss_dssp             TTTCTTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred             hccccCCcEEECCCCcCCccCHHHccCCc-CCCEEECCCCccCccC-hhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence            33444555555544443   334456666 6777777777777554 666777777777777777777555556777777


Q ss_pred             CCEEEcCCCCCC------CCccCcCCCEEeccCCCCCCcccccccCCCCC
Q 038525          108 LKYLNLRWKNLT------EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRL  151 (165)
Q Consensus       108 L~~L~ls~n~l~------~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L  151 (165)
                      |++|++++|.++      .++.+++|++|++++|++++..+..+..+.+|
T Consensus       126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  175 (276)
T 2z62_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (276)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred             CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence            777777777665      35566777777777777765444444443333

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=4.4e-16  Score=110.75  Aligned_cols=125  Identities=14%  Similarity=0.154  Sum_probs=102.3

Q ss_pred             CccccccccccccCCCch-hhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCE
Q 038525           32 NRKTSFTQQRLVEGQDSS-QCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKY  110 (165)
Q Consensus        32 ~~l~~l~~~~~~~~~~~~-~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~  110 (165)
                      ..+..+...++..+.+.. ..+..++ +|++|++++|.+. .  +..+..+++|++|++++|.+++..|..++.+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~-~L~~L~l~~n~~~-~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAH-NIKDLTINNIHAT-N--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCT-TCSEEEEESCCCS-C--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCccChHHHhcCC-CCCEEEccCCCCC-c--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            344555555555444432 2466777 8999999999766 3  447899999999999999999778889999999999


Q ss_pred             EEcCCCCCC-----CCccCcCCCEEeccCCC-CCCcccccccCCCCCcEEEccCCccC
Q 038525          111 LNLRWKNLT-----EIGKILLLQNLDLSHNN-LSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       111 L~ls~n~l~-----~~~~l~~L~~L~ls~N~-l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      |++++|.++     .++.+++|++|++++|. ++ .+| .+..+++|+.|++++|+..
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence            999999998     57889999999999998 65 566 6899999999999999864

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.66  E-value=5.5e-16  Score=126.59  Aligned_cols=112  Identities=19%  Similarity=0.141  Sum_probs=75.4

Q ss_pred             chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCc
Q 038525           48 SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIG  122 (165)
Q Consensus        48 ~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~  122 (165)
                      ++..|..++ +|++|++++|.+.+.. |..|+++++|++|++++|.+++..|..|+.+++|++|++++|.++     .++
T Consensus        49 ~~~~~~~l~-~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~  126 (606)
T 3t6q_A           49 QNTTFSRLI-NLTFLDLTRCQIYWIH-EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH  126 (606)
T ss_dssp             CTTTSTTCT-TCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCT
T ss_pred             ChhHhccCc-cceEEECCCCccceeC-hhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhc
Confidence            344556666 6777777777777555 667777777777777777777666667777777777777777766     456


Q ss_pred             cCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          123 KILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       123 ~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      .+++|++|++++|.+++..+..+..+++|++|++++|+.
T Consensus       127 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  165 (606)
T 3t6q_A          127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI  165 (606)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred             cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc
Confidence            667777777777777653323344467777777777654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.66  E-value=8.6e-16  Score=122.32  Aligned_cols=129  Identities=18%  Similarity=0.108  Sum_probs=92.9

Q ss_pred             CCccccccccccccCCC---chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCC
Q 038525           31 ENRKTSFTQQRLVEGQD---SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLK  107 (165)
Q Consensus        31 ~~~l~~l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~  107 (165)
                      ...++.|..+++..+.+   .+..|..++ +|++|++++|.+.+.. +..|.++++|++|++++|.+++..|..|..+++
T Consensus        52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  129 (477)
T 2id5_A           52 FASFPHLEELELNENIVSAVEPGAFNNLF-NLRTLGLRSNRLKLIP-LGVFTGLSNLTKLDISENKIVILLDYMFQDLYN  129 (477)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCSCC-TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             ccCCCCCCEEECCCCccCEeChhhhhCCc-cCCEEECCCCcCCccC-cccccCCCCCCEEECCCCccccCChhHcccccc
Confidence            33445555555554444   345567777 7888888888888443 566788888888888888888777777888888


Q ss_pred             CCEEEcCCCCCC-----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          108 LKYLNLRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       108 L~~L~ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      |+.|++++|.++     .+..+++|+.|++++|.+++..+..+.++++|+.|++++|+.
T Consensus       130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred             CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence            888888888876     567777788888888877765555667777777777776653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.66  E-value=3.1e-16  Score=114.51  Aligned_cols=104  Identities=15%  Similarity=0.185  Sum_probs=51.5

Q ss_pred             hhhccccCeeEEEeec-CCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCC---EEEcCCC-CCC-----C
Q 038525           51 CFRSLQLGWYHIELVE-CSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLK---YLNLRWK-NLT-----E  120 (165)
Q Consensus        51 ~~~~l~~~L~~L~ls~-n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~---~L~ls~n-~l~-----~  120 (165)
                      .|..++ +|++|++++ |.+++.. +..|.++++|++|++++|.+++ +|. +..+++|+   +|++++| .++     .
T Consensus        75 ~f~~l~-~L~~L~l~~~n~l~~i~-~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~  150 (239)
T 2xwt_C           75 SFYNLS-KVTHIEIRNTRNLTYID-PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNA  150 (239)
T ss_dssp             TEESCT-TCCEEEEEEETTCCEEC-TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTT
T ss_pred             HcCCCc-CCcEEECCCCCCeeEcC-HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCccc
Confidence            344444 455555554 5554322 4445555555555555555552 443 44455554   5555555 444     3


Q ss_pred             CccCcCCC-EEeccCCCCCCcccccccCCCCCcEEEccCC
Q 038525          121 IGKILLLQ-NLDLSHNNLSDSQFRFVIPYLRLSVQCVWTC  159 (165)
Q Consensus       121 ~~~l~~L~-~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n  159 (165)
                      |.++++|+ .|++++|.++ .+|......++|+.|++++|
T Consensus       151 ~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n  189 (239)
T 2xwt_C          151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN  189 (239)
T ss_dssp             TTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTC
T ss_pred             ccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCC
Confidence            45555555 5555555555 33333222255555555555

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=1.6e-16  Score=108.11  Aligned_cols=104  Identities=15%  Similarity=0.176  Sum_probs=91.0

Q ss_pred             hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccC
Q 038525           51 CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKI  124 (165)
Q Consensus        51 ~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l  124 (165)
                      .+..++ ++++|++++|.+++.   ..++.+++|++|++++|.+++.+|..+..+++|++|++++|.++      .++.+
T Consensus        37 ~~~~l~-~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l  112 (149)
T 2je0_A           37 LTDEFE-ELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL  112 (149)
T ss_dssp             CCTTCT-TCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGC
T ss_pred             HHhhcC-CCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhC
Confidence            356667 899999999999853   57899999999999999999778888888999999999999998      57889


Q ss_pred             cCCCEEeccCCCCCCccc---ccccCCCCCcEEEccC
Q 038525          125 LLLQNLDLSHNNLSDSQF---RFVIPYLRLSVQCVWT  158 (165)
Q Consensus       125 ~~L~~L~ls~N~l~~~~p---~~~~~l~~L~~L~l~~  158 (165)
                      ++|++|++++|.+++..+   ..+..+++|++|++++
T Consensus       113 ~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          113 ENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999999999986554   4789999999999874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=2.6e-16  Score=131.76  Aligned_cols=111  Identities=22%  Similarity=0.207  Sum_probs=97.0

Q ss_pred             CchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCc
Q 038525           47 DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIG  122 (165)
Q Consensus        47 ~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~  122 (165)
                      +++..+..++ .|++|++++|.+. .+ |..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.|+    .++
T Consensus       215 ~~~~~~~~l~-~L~~L~Ls~n~l~-~l-~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~  290 (727)
T 4b8c_D          215 MPKDSKYDDQ-LWHALDLSNLQIF-NI-SANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELG  290 (727)
T ss_dssp             -------CCC-CCCEEECTTSCCS-CC-CGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGG
T ss_pred             cChhhhccCC-CCcEEECCCCCCC-CC-ChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhc
Confidence            3556677777 8999999999998 77 778889999999999999999 89999999999999999999998    788


Q ss_pred             cCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          123 KILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       123 ~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      .+++|++|+|++|.++ .+|..|..+++|++|+|++|+..
T Consensus       291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred             CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccC
Confidence            9999999999999997 78889999999999999999864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.65  E-value=1.4e-15  Score=120.66  Aligned_cols=126  Identities=21%  Similarity=0.211  Sum_probs=60.6

Q ss_pred             ccccccccccccCCC---chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcC--------
Q 038525           33 RKTSFTQQRLVEGQD---SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQ--------  101 (165)
Q Consensus        33 ~l~~l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--------  101 (165)
                      .++.|..+++..+.+   ++..|..++ +|++|++++|.+++.. +..|..+++|++|++++|.+++..+..        
T Consensus        97 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  174 (452)
T 3zyi_A           97 HLHHLEVLQLGRNSIRQIEVGAFNGLA-SLNTLELFDNWLTVIP-SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM  174 (452)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSBCC-TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred             CCCCCCEEECCCCccCCcChhhccCcc-cCCEEECCCCcCCccC-hhhhcccCCCCEEECCCCCcceeCHhHHhcCCccc
Confidence            334444444433333   333455555 5666666666665333 444555666666666666555322222        


Q ss_pred             -----------------cCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525          102 -----------------IGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       102 -----------------~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                                       |..+++|++|++++|.++   .+..+++|+.|++++|.+++..|..|.++++|+.|++++|+
T Consensus       175 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  253 (452)
T 3zyi_A          175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ  253 (452)
T ss_dssp             EEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred             EEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence                             333444444444444443   33344445555555555544444444444444444444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.65  E-value=1.1e-15  Score=124.76  Aligned_cols=106  Identities=16%  Similarity=0.073  Sum_probs=97.9

Q ss_pred             ccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEE
Q 038525           56 QLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNL  130 (165)
Q Consensus        56 ~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L  130 (165)
                      +..+++|++++|.+++.. |..|+++++|++|++++|.+++..|..|+.+++|++|++++|+++     .++++++|++|
T Consensus        32 ~~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  110 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL  110 (606)
T ss_dssp             CTTCCEEECTTCCCSEEC-TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred             CCcCcEEEccCCccCcCC-hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence            336779999999999776 889999999999999999999888999999999999999999997     68899999999


Q ss_pred             eccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          131 DLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       131 ~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      ++++|.+++..|..+.++++|++|++++|+..
T Consensus       111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~  142 (606)
T 3t6q_A          111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHIS  142 (606)
T ss_dssp             ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCC
T ss_pred             eccccCcccCCcchhccCCcccEEECCCCccc
Confidence            99999999777889999999999999999864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.65  E-value=1.2e-15  Score=120.95  Aligned_cols=67  Identities=25%  Similarity=0.234  Sum_probs=32.8

Q ss_pred             hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC
Q 038525           51 CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT  119 (165)
Q Consensus        51 ~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~  119 (165)
                      .|..++ +|++|++++|.+.+.. +..|.++++|++|++++|.+++..+..|..+++|++|++++|+++
T Consensus        94 ~~~~l~-~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  160 (452)
T 3zyi_A           94 TFRHLH-HLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE  160 (452)
T ss_dssp             TTTTCT-TCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred             HcCCCC-CCCEEECCCCccCCcC-hhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc
Confidence            344444 4555555555554333 444555555555555555555333334444555555555555444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.65  E-value=4.9e-16  Score=128.25  Aligned_cols=109  Identities=11%  Similarity=0.129  Sum_probs=94.7

Q ss_pred             hhhccccCeeEEEeecCCCCcc-----------------cCCcccC--CCCCCcEEEcccCcCCCCCCcCcCCCCCCCEE
Q 038525           51 CFRSLQLGWYHIELVECSIKGE-----------------LGSLNFS--CFSNLQYINLWNNDLSGSIPPQIGSLLKLKYL  111 (165)
Q Consensus        51 ~~~~l~~~L~~L~ls~n~l~~~-----------------~~p~~~~--~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L  111 (165)
                      .+..++ +|++|++++|.+++.                 + |..++  .+++|++|++++|.+.+.+|+.++.+++|++|
T Consensus       201 ~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i-p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  278 (636)
T 4eco_A          201 AVMRLT-KLRQFYMGNSPFVAENICEAWENENSEYAQQYK-TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI  278 (636)
T ss_dssp             GGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred             HHhccc-CCCEEECcCCccccccccccccccccchhcccC-chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence            366677 899999999999975                 8 88888  99999999999999999999999999999999


Q ss_pred             EcCCCC-CC------CCccC------cCCCEEeccCCCCCCcccc--cccCCCCCcEEEccCCccC
Q 038525          112 NLRWKN-LT------EIGKI------LLLQNLDLSHNNLSDSQFR--FVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       112 ~ls~n~-l~------~~~~l------~~L~~L~ls~N~l~~~~p~--~~~~l~~L~~L~l~~n~~~  162 (165)
                      ++++|+ ++      .++.+      ++|++|++++|.++ .+|.  .+.++++|++|++++|+..
T Consensus       279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~  343 (636)
T 4eco_A          279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE  343 (636)
T ss_dssp             ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred             ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc
Confidence            999998 65      34444      89999999999998 7888  8999999999999998754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.64  E-value=8.7e-16  Score=130.29  Aligned_cols=113  Identities=19%  Similarity=0.145  Sum_probs=86.1

Q ss_pred             chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-------C
Q 038525           48 SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-------E  120 (165)
Q Consensus        48 ~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-------~  120 (165)
                      .+..|..++ +|++|++++|...+.++|..|..+++|++|++++|.+++..|+.|+.+++|++|++++|.++       .
T Consensus        40 ~~~~~~~l~-~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  118 (844)
T 3j0a_A           40 TASSFPFLE-QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY  118 (844)
T ss_dssp             CSSSCSSCC-SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCC
T ss_pred             ChhHCcccc-cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcc
Confidence            344566777 78888888886655655677888888888888888888777888888888888888888776       2


Q ss_pred             CccCcCCCEEeccCCCCCCccc-ccccCCCCCcEEEccCCcc
Q 038525          121 IGKILLLQNLDLSHNNLSDSQF-RFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       121 ~~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~L~l~~n~~  161 (165)
                      ++.+++|++|++++|.+++..| ..|.++++|++|++++|+.
T Consensus       119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A          119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            6778888888888888876544 4678888888888888764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.64  E-value=6.7e-16  Score=117.05  Aligned_cols=128  Identities=18%  Similarity=0.113  Sum_probs=79.5

Q ss_pred             CccccccccccccCCCch--hhhhcc-----ccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCC--CCcCc
Q 038525           32 NRKTSFTQQRLVEGQDSS--QCFRSL-----QLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGS--IPPQI  102 (165)
Q Consensus        32 ~~l~~l~~~~~~~~~~~~--~~~~~l-----~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~--~p~~~  102 (165)
                      ..+++|..+++..+.+..  ..+..+     + +|++|++++|++.+.. |..|+.+++|++|++++|++.+.  .|..+
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~-~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKP-GLKVLSIAQAHSLNFS-CEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCT-TCCEEEEESCSCCCCC-TTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcC-CCcEEEeeCCCCccch-HHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence            344455555554443321  223333     3 6777777777777554 67777777777777777776543  23333


Q ss_pred             --CCCCCCCEEEcCCCCCC--------CCccCcCCCEEeccCCCCCCccc-ccccCCCCCcEEEccCCcc
Q 038525          103 --GSLLKLKYLNLRWKNLT--------EIGKILLLQNLDLSHNNLSDSQF-RFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       103 --~~l~~L~~L~ls~n~l~--------~~~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~L~l~~n~~  161 (165)
                        ..+++|++|++++|+++        .+..+++|++|++++|.+++..| ..+..+++|++|++++|+.
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l  265 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL  265 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence              66777777777777776        12355677777777777776554 3455567777777777765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=3e-15  Score=122.65  Aligned_cols=130  Identities=15%  Similarity=0.092  Sum_probs=89.1

Q ss_pred             CCCccccccccccccCC---CchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCC
Q 038525           30 SENRKTSFTQQRLVEGQ---DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLL  106 (165)
Q Consensus        30 ~~~~l~~l~~~~~~~~~---~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~  106 (165)
                      ....++.|..+++..+.   +++..|..++ +|++|++++|.+.+.. +..|+.+++|++|++++|.+++..|..|+.++
T Consensus        94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  171 (597)
T 3oja_B           94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQATT  171 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred             HhcCCCCCCEEECCCCcCCCCCHHHHcCCC-CCCEEEeeCCCCCCCC-HHHhccCCCCCEEEeeCCcCCCCChhhhhcCC
Confidence            33444455555554333   3455566677 7888888888887433 55567888888888888888877777777788


Q ss_pred             CCCEEEcCCCCCC--C--------------------------------------------------------------Cc
Q 038525          107 KLKYLNLRWKNLT--E--------------------------------------------------------------IG  122 (165)
Q Consensus       107 ~L~~L~ls~n~l~--~--------------------------------------------------------------~~  122 (165)
                      +|++|++++|.++  .                                                              +.
T Consensus       172 ~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~  251 (597)
T 3oja_B          172 SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL  251 (597)
T ss_dssp             TCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGG
T ss_pred             cCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhc
Confidence            8888888777664  1                                                              34


Q ss_pred             cCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          123 KILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       123 ~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      .+++|+.|++++|.+++..|..|..+++|+.|++++|+.
T Consensus       252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  290 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL  290 (597)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred             cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence            456677777777777766677777777777777777764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=2.6e-16  Score=128.49  Aligned_cols=101  Identities=20%  Similarity=0.223  Sum_probs=93.1

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSH  134 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~  134 (165)
                      .+++|++++|.+++ + |. ++.+++|+.|++++|.++ .+|..++.+++|+.|++++|.++   .++.+++|+.|++++
T Consensus       442 ~L~~L~Ls~n~l~~-l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-L-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSS-C-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCC-C-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCC
Confidence            46799999999995 6 75 999999999999999999 88999999999999999999998   678899999999999


Q ss_pred             CCCCCcc-cccccCCCCCcEEEccCCccC
Q 038525          135 NNLSDSQ-FRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       135 N~l~~~~-p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      |.+++.. |..+..+++|+.|++++|+..
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            9999776 999999999999999999863

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.63  E-value=5e-16  Score=119.43  Aligned_cols=99  Identities=19%  Similarity=0.118  Sum_probs=45.9

Q ss_pred             eeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEecc
Q 038525           59 WYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLS  133 (165)
Q Consensus        59 L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls  133 (165)
                      +++|++++|.+++.. +..|..+++|++|++++|.+++..|..|..+++|++|++++|+++     .++.+++|++|+++
T Consensus        54 L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           54 VKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             CCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             CcEEECCCCcCcccC-HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            335555555544322 334444555555555555554434444444555555555555444     13444445555555


Q ss_pred             CCCCCCcccc--cccCCCCCcEEEccCC
Q 038525          134 HNNLSDSQFR--FVIPYLRLSVQCVWTC  159 (165)
Q Consensus       134 ~N~l~~~~p~--~~~~l~~L~~L~l~~n  159 (165)
                      +|++++ +|.  .+.++++|++|++++|
T Consensus       133 ~n~l~~-l~~~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A          133 GNPYKT-LGETSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             TCCCSS-SCSSCSCTTCTTCCEEEEEES
T ss_pred             CCCCcc-cCchhhhccCCCCcEEECCCC
Confidence            554442 222  3444444444444444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.63  E-value=2.3e-15  Score=119.04  Aligned_cols=62  Identities=18%  Similarity=0.196  Sum_probs=33.0

Q ss_pred             ccccccccccccCCC---chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCC
Q 038525           33 RKTSFTQQRLVEGQD---SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSG   96 (165)
Q Consensus        33 ~l~~l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~   96 (165)
                      .+++|..+++..+.+   +...|..++ +|++|++++|.+++.. +..|..+++|++|++++|.+++
T Consensus        86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~i~~  150 (440)
T 3zyj_A           86 HLRHLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRLTTIP-NGAFVYLSKLKELWLRNNPIES  150 (440)
T ss_dssp             SCSSCCEEECCSSCCCEECGGGGTTCS-SCCEEECCSSCCSSCC-TTTSCSCSSCCEEECCSCCCCE
T ss_pred             CCCCCCEEECCCCcCCccChhhccCCc-cCCEEECCCCcCCeeC-HhHhhccccCceeeCCCCcccc
Confidence            344444444443333   334455555 5666666666666333 4455666666666666665553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=9.5e-16  Score=106.19  Aligned_cols=102  Identities=25%  Similarity=0.303  Sum_probs=90.4

Q ss_pred             CeeEEEeecCCCC-cccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEe
Q 038525           58 GWYHIELVECSIK-GELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLD  131 (165)
Q Consensus        58 ~L~~L~ls~n~l~-~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~  131 (165)
                      ++++|++++|.+. +.+ |..+..+++|++|++++|.+++.  ..+..+++|++|++++|.++     .+..+++|++|+
T Consensus        25 ~L~~L~l~~n~l~~~~i-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             SCSEEECCSCBCBTTBC-SSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             cCCEEECCCCCCChhhH-HHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            6789999999998 778 88889999999999999999955  78899999999999999998     344689999999


Q ss_pred             ccCCCCCCcc-cccccCCCCCcEEEccCCccC
Q 038525          132 LSHNNLSDSQ-FRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       132 ls~N~l~~~~-p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      +++|.+++.. +..+..+++|++|++++|+..
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~  133 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVT  133 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence            9999998632 278999999999999999864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.63  E-value=2e-15  Score=119.38  Aligned_cols=110  Identities=22%  Similarity=0.188  Sum_probs=65.2

Q ss_pred             hhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCcc
Q 038525           49 SQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGK  123 (165)
Q Consensus        49 ~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~  123 (165)
                      ...|..++ +|++|++++|.+.+.. +..|.++++|++|++++|.+++..+..|..+++|++|++++|+++     .+..
T Consensus        81 ~~~~~~l~-~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~  158 (440)
T 3zyj_A           81 VNSFKHLR-HLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR  158 (440)
T ss_dssp             TTTTSSCS-SCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTT
T ss_pred             HHHhhCCC-CCCEEECCCCcCCccC-hhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhh
Confidence            34455666 6777777777776444 666777777777777777777444455667777777777777665     3445


Q ss_pred             CcCCCEEeccCCCCCCccc-ccccCCCCCcEEEccCCc
Q 038525          124 ILLLQNLDLSHNNLSDSQF-RFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       124 l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~L~l~~n~  160 (165)
                      +++|++|++++|+..+.+| ..|.++++|++|++++|+
T Consensus       159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  196 (440)
T 3zyj_A          159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN  196 (440)
T ss_dssp             CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred             CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence            5555555555532222222 244455555555555554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.63  E-value=5.5e-16  Score=125.17  Aligned_cols=111  Identities=19%  Similarity=0.110  Sum_probs=72.2

Q ss_pred             hhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCc
Q 038525           49 SQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIG  122 (165)
Q Consensus        49 ~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~  122 (165)
                      +..+..++ +|++|++++|.+.+.. |..|+.+++|++|++++|.+++..|..|+.+++|++|++++|.++      .++
T Consensus        43 ~~~~~~l~-~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  120 (549)
T 2z81_A           43 HGDLRACA-NLQVLILKSSRINTIE-GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP  120 (549)
T ss_dssp             SSTTSSCT-TCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred             hhhhhcCC-cccEEECCCCCcCccC-hhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhh
Confidence            34455666 6777777777777554 666777777777777777777555555677777777777777665      355


Q ss_pred             cCcCCCEEeccCCCCCCccc-ccccCCCCCcEEEccCCcc
Q 038525          123 KILLLQNLDLSHNNLSDSQF-RFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       123 ~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~L~l~~n~~  161 (165)
                      .+++|++|++++|.+.+.+| ..+.++++|++|++++|+.
T Consensus       121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A          121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            66667777777766433443 4566666677776666654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.63  E-value=9.5e-16  Score=116.05  Aligned_cols=129  Identities=15%  Similarity=0.060  Sum_probs=97.7

Q ss_pred             CccccccccccccCCCch-------hhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCC--C--Cc
Q 038525           32 NRKTSFTQQRLVEGQDSS-------QCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGS--I--PP  100 (165)
Q Consensus        32 ~~l~~l~~~~~~~~~~~~-------~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~--~--p~  100 (165)
                      ..+++|..+++..+.+..       ..+..++ +|++|++++|.+.+.. |..|..+++|++|++++|++.+.  +  +.
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  191 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKP-GLKVLSIAQAHSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAAL  191 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS-CCCEEEEECCSSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTS
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhcc-CCCEEEeeCCCcchhh-HHHhccCCCCCEEECCCCCCccchhhhHHH
Confidence            556666777776666543       2233466 8889999999998666 88899999999999999998642  2  22


Q ss_pred             CcCCCCCCCEEEcCCCCCC---C-----CccCcCCCEEeccCCCCCCcccccccCC---CCCcEEEccCCccC
Q 038525          101 QIGSLLKLKYLNLRWKNLT---E-----IGKILLLQNLDLSHNNLSDSQFRFVIPY---LRLSVQCVWTCHST  162 (165)
Q Consensus       101 ~~~~l~~L~~L~ls~n~l~---~-----~~~l~~L~~L~ls~N~l~~~~p~~~~~l---~~L~~L~l~~n~~~  162 (165)
                      .++.+++|++|++++|+++   .     ++.+++|++|++++|.+++..|+.+..+   ++|++|++++|+..
T Consensus       192 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          192 CPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             CTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred             hhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence            3467888999999999887   1     3567889999999999987777777766   58888888888753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.63  E-value=7.8e-16  Score=124.59  Aligned_cols=110  Identities=18%  Similarity=0.218  Sum_probs=97.2

Q ss_pred             hhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCC-CCCCcCcCCCCCCCEEEcCCCCCC-----CCcc
Q 038525           50 QCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLS-GSIPPQIGSLLKLKYLNLRWKNLT-----EIGK  123 (165)
Q Consensus        50 ~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~  123 (165)
                      ..+..++ +|++|++++|.+.+.. |..+.++++|++|++++|.++ +.+|..+..+++|+.|++++|+++     .+..
T Consensus       415 ~~~~~l~-~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  492 (570)
T 2z63_A          415 SVFLSLR-NLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS  492 (570)
T ss_dssp             CTTTTCT-TCCEEECTTSCCEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             hhhhcCC-CCCEEeCcCCcccccc-hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhc
Confidence            4566777 8889999999998777 888999999999999999987 578888999999999999999988     6788


Q ss_pred             CcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          124 ILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       124 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      +++|++|++++|++++..|..+.++++|+.|++++|+.
T Consensus       493 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence            89999999999999988778899999999999999874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.62  E-value=6.4e-15  Score=114.59  Aligned_cols=128  Identities=16%  Similarity=0.120  Sum_probs=82.4

Q ss_pred             CccccccccccccCC---CchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCC
Q 038525           32 NRKTSFTQQRLVEGQ---DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKL  108 (165)
Q Consensus        32 ~~l~~l~~~~~~~~~---~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L  108 (165)
                      ..++.|+.+++..+.   +++..+..++ +|++|++++|.+. .+++..|..+++|++|++++|.+++..|..+..+++|
T Consensus        90 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  167 (390)
T 3o6n_A           90 AYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL  167 (390)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred             cCCCCcCEEECCCCCCCcCCHHHhcCCC-CCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence            334444444444333   3444566666 7777777777777 4414445777777777777777776666667777777


Q ss_pred             CEEEcCCCCCC--C--------------------------------------------------------------CccC
Q 038525          109 KYLNLRWKNLT--E--------------------------------------------------------------IGKI  124 (165)
Q Consensus       109 ~~L~ls~n~l~--~--------------------------------------------------------------~~~l  124 (165)
                      ++|++++|+++  .                                                              +..+
T Consensus       168 ~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l  247 (390)
T 3o6n_A          168 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY  247 (390)
T ss_dssp             CEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGC
T ss_pred             CEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCC
Confidence            77777777654  1                                                              2334


Q ss_pred             cCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          125 LLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       125 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      ++|++|++++|.+++..|..+..+++|+.|++++|+.
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  284 (390)
T 3o6n_A          248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL  284 (390)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC
T ss_pred             CCccEEECCCCcCCCcChhHccccccCCEEECCCCcC
Confidence            5666677777777666666777777777777777764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.62  E-value=4.4e-15  Score=113.10  Aligned_cols=103  Identities=17%  Similarity=0.127  Sum_probs=50.6

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcCCCEEecc
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLS  133 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls  133 (165)
                      +|++|++++|.+.+.. |..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++    .+..+++|++|+++
T Consensus       193 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~  271 (330)
T 1xku_A          193 SLTELHLDGNKITKVD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH  271 (330)
T ss_dssp             TCSEEECTTSCCCEEC-TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred             cCCEEECCCCcCCccC-HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence            3445555555555433 445555555555555555555444444555555555555555554    34445555555555


Q ss_pred             CCCCCCcccccccC------CCCCcEEEccCCcc
Q 038525          134 HNNLSDSQFRFVIP------YLRLSVQCVWTCHS  161 (165)
Q Consensus       134 ~N~l~~~~p~~~~~------l~~L~~L~l~~n~~  161 (165)
                      +|++++..+..|..      ...|+.+++++|..
T Consensus       272 ~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             CCcCCccChhhcCCcccccccccccceEeecCcc
Confidence            55555433333322      13445555555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.62  E-value=9.9e-16  Score=122.90  Aligned_cols=101  Identities=23%  Similarity=0.168  Sum_probs=47.6

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcC-CCCCCCEEEcCCCCCC---CCccCcCCCEEecc
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIG-SLLKLKYLNLRWKNLT---EIGKILLLQNLDLS  133 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~-~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls  133 (165)
                      +|++|++++|.+++.. |..++.+++|++|++++|.+++..|..+. .+++|+.|++++|.++   ....+++|+.|+++
T Consensus       121 ~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls  199 (487)
T 3oja_A          121 GKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS  199 (487)
T ss_dssp             SCEEEECCSSCCCSGG-GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECC
T ss_pred             CCCEEECCCCCCCCCC-chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECC
Confidence            3445555555555444 44555555555555555555544444443 3455555555555544   22334444444444


Q ss_pred             CCCCCCcccccccCCCCCcEEEccCCc
Q 038525          134 HNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       134 ~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      +|.+++ +|..+..+++|+.|++++|+
T Consensus       200 ~N~l~~-~~~~~~~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          200 SNKLAF-MGPEFQSAAGVTWISLRNNK  225 (487)
T ss_dssp             SSCCCE-ECGGGGGGTTCSEEECTTSC
T ss_pred             CCCCCC-CCHhHcCCCCccEEEecCCc
Confidence            444442 22234444444444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.62  E-value=4.1e-15  Score=105.67  Aligned_cols=98  Identities=15%  Similarity=0.158  Sum_probs=89.0

Q ss_pred             eEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEeccC
Q 038525           60 YHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSH  134 (165)
Q Consensus        60 ~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls~  134 (165)
                      +++++++|.+. .+ |..+.  ++|++|++++|.++ .+|..|..+++|+.|++++|.++     .|.++++|++|++++
T Consensus        13 ~~l~~~~~~l~-~i-p~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VL-PKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SC-CSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cC-CCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            37899999998 67 76554  68999999999999 88899999999999999999998     588999999999999


Q ss_pred             CCCCCcccccccCCCCCcEEEccCCccC
Q 038525          135 NNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       135 N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      |.+++..|..|..+++|++|++++|+..
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~  115 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDIS  115 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence            9999888889999999999999999864

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.62  E-value=5.5e-15  Score=112.73  Aligned_cols=103  Identities=16%  Similarity=0.059  Sum_probs=83.4

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC--CCccCcCCCEEeccCC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT--EIGKILLLQNLDLSHN  135 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~--~~~~l~~L~~L~ls~N  135 (165)
                      ++++|++++|.+.+.. |..|..+++|++|++++|.+++..|..|+.+++|++|++++|+++  .-.-.++|++|++++|
T Consensus        55 ~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n  133 (332)
T 2ft3_A           55 DTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN  133 (332)
T ss_dssp             TCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSS
T ss_pred             CCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence            5678999999888655 778888999999999999988777888888899999999998887  1122278888888888


Q ss_pred             CCCCcccccccCCCCCcEEEccCCcc
Q 038525          136 NLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       136 ~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      .+++..+..+.++++|+.|++++|+.
T Consensus       134 ~i~~~~~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          134 RIRKVPKGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             CCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred             ccCccCHhHhCCCccCCEEECCCCcc
Confidence            88866666788888888888888875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.61  E-value=1.1e-15  Score=129.77  Aligned_cols=131  Identities=20%  Similarity=0.146  Sum_probs=105.8

Q ss_pred             ccCCCccccccccccccC----CCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcC--
Q 038525           28 AASENRKTSFTQQRLVEG----QDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQ--  101 (165)
Q Consensus        28 ~~~~~~l~~l~~~~~~~~----~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~--  101 (165)
                      +.....++.|..+++..+    .+++..|..++ +|++|++++|.+.+.. |..|+++++|++|++++|.+++..|..  
T Consensus        41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~-~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  118 (844)
T 3j0a_A           41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP-NLRILDLGSSKIYFLH-PDAFQGLFHLFELRLYFCGLSDAVLKDGY  118 (844)
T ss_dssp             SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCT-TCCEEECTTCCCCEEC-TTSSCSCSSCCCEECTTCCCSSCCSTTCC
T ss_pred             hhHCcccccCeEEeCCCCCCccccCHHHhcCCC-CCCEEECCCCcCcccC-HhHccCCcccCEeeCcCCCCCcccccCcc
Confidence            344556667777777555    34466788888 8999999999999777 999999999999999999999767765  


Q ss_pred             cCCCCCCCEEEcCCCCCC------CCccCcCCCEEeccCCCCCCcccccccCC--CCCcEEEccCCc
Q 038525          102 IGSLLKLKYLNLRWKNLT------EIGKILLLQNLDLSHNNLSDSQFRFVIPY--LRLSVQCVWTCH  160 (165)
Q Consensus       102 ~~~l~~L~~L~ls~n~l~------~~~~l~~L~~L~ls~N~l~~~~p~~~~~l--~~L~~L~l~~n~  160 (165)
                      |+.+++|++|++++|.++      .++++++|++|++++|.+++..|+.+..+  ++|+.|++++|.
T Consensus       119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~  185 (844)
T 3j0a_A          119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS  185 (844)
T ss_dssp             CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred             ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence            889999999999999987      47889999999999999988777777665  566666666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=6.2e-15  Score=104.52  Aligned_cols=90  Identities=22%  Similarity=0.224  Sum_probs=82.5

Q ss_pred             hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCc
Q 038525           51 CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKIL  125 (165)
Q Consensus        51 ~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~  125 (165)
                      .+..++ +|++|++++|.+++.. |..|..+++|++|++++|.+++..|..|..+++|++|++++|+++     .+..++
T Consensus        49 ~~~~l~-~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  126 (192)
T 1w8a_A           49 LFGRLP-HLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN  126 (192)
T ss_dssp             SGGGCT-TCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT
T ss_pred             ccccCC-CCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC
Confidence            477788 8999999999999877 899999999999999999999888888999999999999999998     688899


Q ss_pred             CCCEEeccCCCCCCccc
Q 038525          126 LLQNLDLSHNNLSDSQF  142 (165)
Q Consensus       126 ~L~~L~ls~N~l~~~~p  142 (165)
                      +|++|++++|.+.+..+
T Consensus       127 ~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          127 SLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             TCCEEECTTCCBCCSGG
T ss_pred             CCCEEEeCCCCccCcCc
Confidence            99999999999987654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.61  E-value=6.4e-15  Score=112.18  Aligned_cols=102  Identities=22%  Similarity=0.165  Sum_probs=54.7

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC--CCccCcCCCEEeccCC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT--EIGKILLLQNLDLSHN  135 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~--~~~~l~~L~~L~ls~N  135 (165)
                      .+++|++++|.+++.. +..|..+++|++|++++|.+++..|..|..+++|++|++++|+++  .-.-.++|++|++++|
T Consensus        53 ~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n  131 (330)
T 1xku_A           53 DTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN  131 (330)
T ss_dssp             TCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred             CCeEEECCCCcCCEeC-hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCC
Confidence            4556666666666443 445666666666666666666555666666666666666666655  1111134444444444


Q ss_pred             CCCCcccccccCCCCCcEEEccCCc
Q 038525          136 NLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       136 ~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      .+++..+..+.++++|+.|++++|+
T Consensus       132 ~l~~~~~~~~~~l~~L~~L~l~~n~  156 (330)
T 1xku_A          132 EITKVRKSVFNGLNQMIVVELGTNP  156 (330)
T ss_dssp             CCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred             cccccCHhHhcCCccccEEECCCCc
Confidence            4443333334444444444444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.61  E-value=1.4e-15  Score=122.20  Aligned_cols=103  Identities=17%  Similarity=0.125  Sum_probs=72.7

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC--CCccCcCCCEEeccCC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT--EIGKILLLQNLDLSHN  135 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~--~~~~l~~L~~L~ls~N  135 (165)
                      ++++|++++|.+.+.. |..|..+++|++|++++|.+++..|..|+.+++|++|++++|+++  .-..+++|++|++++|
T Consensus        22 ~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~N  100 (520)
T 2z7x_B           22 KTTILNISQNYISELW-TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFN  100 (520)
T ss_dssp             TCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECCSS
T ss_pred             cccEEECCCCcccccC-hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEeccCC
Confidence            5667777777777554 567777777777777777777666677777777777777777776  1116677777777777


Q ss_pred             CCCC-cccccccCCCCCcEEEccCCcc
Q 038525          136 NLSD-SQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       136 ~l~~-~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      .+++ .+|..+.++++|++|++++|+.
T Consensus       101 ~l~~~~~p~~~~~l~~L~~L~L~~n~l  127 (520)
T 2z7x_B          101 AFDALPICKEFGNMSQLKFLGLSTTHL  127 (520)
T ss_dssp             CCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred             ccccccchhhhccCCcceEEEecCccc
Confidence            7765 3567777777777777777754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.61  E-value=1.6e-15  Score=115.23  Aligned_cols=105  Identities=16%  Similarity=-0.001  Sum_probs=60.2

Q ss_pred             hhccccCeeEEEeecCCCCcccCCccc-CCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcC
Q 038525           52 FRSLQLGWYHIELVECSIKGELGSLNF-SCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILL  126 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~  126 (165)
                      +..++ +|++|++++|.+.+.. +..+ ..+++|++|++++|.+++ +|. ...+++|++|++++|+++    .+..+++
T Consensus       140 ~~~l~-~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~  215 (317)
T 3o53_A          140 EGCRS-RVQYLDLKLNEIDTVN-FAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAG  215 (317)
T ss_dssp             TGGGS-SEEEEECTTSCCCEEE-GGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTT
T ss_pred             hhccC-CCCEEECCCCCCCccc-HHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEEECCCCcCCcchhhhcccCc
Confidence            33444 5556666666555443 4433 245556666666666552 222 223566666666666665    4555666


Q ss_pred             CCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          127 LQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       127 L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      |+.|++++|.++ .+|..+..+++|+.|++++|+.
T Consensus       216 L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             CSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCC
T ss_pred             ccEEECcCCccc-chhhHhhcCCCCCEEEccCCCc
Confidence            666666666666 4566666666777777766654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.61  E-value=8.1e-16  Score=116.59  Aligned_cols=106  Identities=12%  Similarity=-0.017  Sum_probs=70.1

Q ss_pred             hccccCeeEEEeecCCCCcccCCcccCCC-----CCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC--------
Q 038525           53 RSLQLGWYHIELVECSIKGELGSLNFSCF-----SNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT--------  119 (165)
Q Consensus        53 ~~l~~~L~~L~ls~n~l~~~~~p~~~~~l-----~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~--------  119 (165)
                      ..++ +|++|++++|.+++ . |..++.+     ++|++|++++|++++..|..|+.+++|++|++++|++.        
T Consensus       118 ~~l~-~L~~L~Ls~N~l~~-~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          118 ATGP-DLNILNLRNVSWAT-R-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             CCSC-CCSEEEEESCBCSS-S-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             hcCC-CccEEEccCCCCcc-h-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence            4455 66677777777763 3 5555555     67777777777777666677777777777777777754        


Q ss_pred             -CCccCcCCCEEeccCCCCCC--ccc-ccccCCCCCcEEEccCCcc
Q 038525          120 -EIGKILLLQNLDLSHNNLSD--SQF-RFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       120 -~~~~l~~L~~L~ls~N~l~~--~~p-~~~~~l~~L~~L~l~~n~~  161 (165)
                       .++.+++|++|++++|.+++  .++ ..+..+++|++|++++|+.
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l  240 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL  240 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence             22667777777777777763  112 2345667777777777765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.61  E-value=3.2e-15  Score=123.62  Aligned_cols=103  Identities=19%  Similarity=0.157  Sum_probs=95.6

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL  132 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l  132 (165)
                      ++++|++++|.+.+.. +..|..+++|++|++++|.+++..|..|+.+++|++|++++|.++     .|+.+++|++|++
T Consensus        26 ~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            6779999999999765 778999999999999999999888999999999999999999988     4889999999999


Q ss_pred             cCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          133 SHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       133 s~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      ++|.+++..|..|.++++|++|++++|+.
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  133 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGL  133 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcc
Confidence            99999987778999999999999999975

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.61  E-value=4e-15  Score=114.35  Aligned_cols=123  Identities=17%  Similarity=0.089  Sum_probs=102.1

Q ss_pred             ccccccccCCC---chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEc
Q 038525           37 FTQQRLVEGQD---SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL  113 (165)
Q Consensus        37 l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l  113 (165)
                      +..+++..+.+   +...+..++ +|++|++++|.+++.. |..|..+++|++|++++|.+++..+..|+.+++|++|++
T Consensus        54 L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           54 VKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             CcEEECCCCcCcccCHHHhccCC-CCCEEECCCCccCccC-HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            33444444433   455677888 8999999999999766 888999999999999999999544445899999999999


Q ss_pred             CCCCCC------CCccCcCCCEEeccCC-CCCCcccccccCCCCCcEEEccCCcc
Q 038525          114 RWKNLT------EIGKILLLQNLDLSHN-NLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       114 s~n~l~------~~~~l~~L~~L~ls~N-~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      ++|+++      .+..+++|++|++++| .+.+..|..+.++++|+.|++++|+.
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            999987      3678999999999999 47656677899999999999999975

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.60  E-value=1e-14  Score=117.24  Aligned_cols=105  Identities=18%  Similarity=0.103  Sum_probs=53.0

Q ss_pred             hccccCeeEEEeecCCCCc--ccCCcccCCCCCCcEEEcccCcCCCCCCcC-cCCCCCCC--------------------
Q 038525           53 RSLQLGWYHIELVECSIKG--ELGSLNFSCFSNLQYINLWNNDLSGSIPPQ-IGSLLKLK--------------------  109 (165)
Q Consensus        53 ~~l~~~L~~L~ls~n~l~~--~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~l~~L~--------------------  109 (165)
                      ..++ +|++|++++|++.+  .+ |..+..+++|++|++++|.+++.+|.. +..+++|+                    
T Consensus       345 ~~l~-~L~~L~L~~N~l~~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~  422 (520)
T 2z7x_B          345 GHLT-ELETLILQMNQLKELSKI-AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR  422 (520)
T ss_dssp             CCCS-SCCEEECCSSCCCBHHHH-HHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTT
T ss_pred             ccCC-CCCEEEccCCccCccccc-hHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhccc
Confidence            3444 45555555555553  23 344555555555555555555434432 44444444                    


Q ss_pred             --EEEcCCCCCC----CCccCcCCCEEeccCCCCCCccccc-ccCCCCCcEEEccCCc
Q 038525          110 --YLNLRWKNLT----EIGKILLLQNLDLSHNNLSDSQFRF-VIPYLRLSVQCVWTCH  160 (165)
Q Consensus       110 --~L~ls~n~l~----~~~~l~~L~~L~ls~N~l~~~~p~~-~~~l~~L~~L~l~~n~  160 (165)
                        .|++++|+++    .+..+++|++|++++|+++ .+|.. +..+++|++|++++|+
T Consensus       423 L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          423 IKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             CCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCC
Confidence              4555554444    2334555555556555555 23333 5555556666665554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.60  E-value=4.3e-15  Score=108.41  Aligned_cols=112  Identities=17%  Similarity=0.178  Sum_probs=72.4

Q ss_pred             chhhhhccccCeeEEEeecCC-CCcccCCcccCCCCCCcEEEccc-CcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCc
Q 038525           48 SSQCFRSLQLGWYHIELVECS-IKGELGSLNFSCFSNLQYINLWN-NDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIG  122 (165)
Q Consensus        48 ~~~~~~~l~~~L~~L~ls~n~-l~~~~~p~~~~~l~~L~~L~ls~-N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~  122 (165)
                      ++..|..++ +|++|++++|. +++.. +..|.++++|++|++++ |.+++..+..|..+++|++|++++|+++   .+.
T Consensus        47 ~~~~~~~l~-~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~  124 (239)
T 2xwt_C           47 PSHAFSNLP-NISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLT  124 (239)
T ss_dssp             CTTTTTTCT-TCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCT
T ss_pred             CHHHccCCC-CCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccc
Confidence            444555666 66777777775 65333 55667777777777776 7776444556666777777777777666   455


Q ss_pred             cCcCCC---EEeccCC-CCCCcccccccCCCCCc-EEEccCCcc
Q 038525          123 KILLLQ---NLDLSHN-NLSDSQFRFVIPYLRLS-VQCVWTCHS  161 (165)
Q Consensus       123 ~l~~L~---~L~ls~N-~l~~~~p~~~~~l~~L~-~L~l~~n~~  161 (165)
                      .+++|+   .|++++| .+++..+..|.++++|+ .|++++|+.
T Consensus       125 ~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l  168 (239)
T 2xwt_C          125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF  168 (239)
T ss_dssp             TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred             cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence            556666   7777777 66654445566677777 777776654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.60  E-value=1.2e-14  Score=109.25  Aligned_cols=102  Identities=24%  Similarity=0.265  Sum_probs=57.0

Q ss_pred             hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCC
Q 038525           52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQ  128 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~  128 (165)
                      +..++ +|++|++++|.+.+ + | .+..+++|++|++++|.+++ + +.+..+++|+.|++++|.++   .+..+++|+
T Consensus        86 l~~l~-~L~~L~l~~n~l~~-~-~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~  159 (291)
T 1h6t_A           86 LANLK-NLGWLFLDENKVKD-L-S-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLD  159 (291)
T ss_dssp             GTTCT-TCCEEECCSSCCCC-G-G-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             cccCC-CCCEEECCCCcCCC-C-h-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcchhhccCCCCC
Confidence            34444 55555555555552 2 2 25555566666666665553 2 24555566666666666555   455556666


Q ss_pred             EEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          129 NLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       129 ~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      .|++++|.+++..|  +..+++|+.|++++|+.
T Consensus       160 ~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          160 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence            66666666654333  55666666666666654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.60  E-value=3.1e-15  Score=120.77  Aligned_cols=102  Identities=18%  Similarity=0.084  Sum_probs=94.4

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL  132 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l  132 (165)
                      ++++|++++|.+++.. |..|..+++|++|++++|.+++..|+.|+.+++|++|++++|.++     .++++++|++|++
T Consensus        27 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           27 AMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CccEEECcCCccCccC-hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            6779999999999776 889999999999999999999888889999999999999999998     4889999999999


Q ss_pred             cCCCCCC-cccccccCCCCCcEEEccCCc
Q 038525          133 SHNNLSD-SQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       133 s~N~l~~-~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      ++|.+++ ..|..+.++++|++|++++|+
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCc
Confidence            9999986 457789999999999999997

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.59  E-value=2.2e-14  Score=106.49  Aligned_cols=101  Identities=16%  Similarity=0.117  Sum_probs=69.0

Q ss_pred             hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCC
Q 038525           52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQ  128 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~  128 (165)
                      +..++ +|++|++++|++++.. +  +..+++|++|++++|.+++ +|... . ++|+.|++++|+++   .+..+++|+
T Consensus        59 l~~l~-~L~~L~L~~N~i~~~~-~--l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~~~~l~~l~~L~  131 (263)
T 1xeu_A           59 MQFFT-NLKELHLSHNQISDLS-P--LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRDTDSLIHLKNLE  131 (263)
T ss_dssp             GGGCT-TCCEEECCSSCCCCCG-G--GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSBSGGGTTCTTCC
T ss_pred             HhhCC-CCCEEECCCCccCCCh-h--hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCCChhhcCccccc
Confidence            55566 7778888888887433 3  7788888888888888873 44322 2 67777777777776   566667777


Q ss_pred             EEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          129 NLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       129 ~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      .|++++|++++ +| .+..+++|+.|++++|+.
T Consensus       132 ~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A          132 ILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             EEECTTSCCCB-CG-GGGGCTTCCEEECTTSCC
T ss_pred             EEECCCCcCCC-Ch-HHccCCCCCEEECCCCcC
Confidence            77777777764 33 566677777777777664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.59  E-value=7.5e-15  Score=111.49  Aligned_cols=124  Identities=21%  Similarity=0.128  Sum_probs=102.4

Q ss_pred             cccccccccCCCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcC-CCCCCCEEEcC
Q 038525           36 SFTQQRLVEGQDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIG-SLLKLKYLNLR  114 (165)
Q Consensus        36 ~l~~~~~~~~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~-~l~~L~~L~ls  114 (165)
                      +|....+..+.+.......++ +|++|++++|.+++.. +..+..+++|++|++++|.+++..|..+. .+++|++|+++
T Consensus       100 ~L~~L~l~~n~l~~~~~~~~~-~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  177 (317)
T 3o53_A          100 SIETLHAANNNISRVSCSRGQ-GKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ  177 (317)
T ss_dssp             TCCEEECCSSCCSEEEECCCS-SCEEEECCSSCCCSGG-GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred             CcCEEECCCCccCCcCccccC-CCCEEECCCCCCCCcc-chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence            445555555555544444556 7889999999999766 77899999999999999999977777764 78999999999


Q ss_pred             CCCCC---CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          115 WKNLT---EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       115 ~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      +|.++   ....+++|++|++++|.++ .+|..+..+++|+.|++++|+..
T Consensus       178 ~N~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          178 YNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             TSCCCEEECCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC
T ss_pred             CCcCcccccccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc
Confidence            99998   5556899999999999998 46667999999999999999863

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.58  E-value=2.1e-14  Score=116.68  Aligned_cols=106  Identities=20%  Similarity=0.125  Sum_probs=52.6

Q ss_pred             hhccccCeeEEEeecCCCCc--ccCCcccCCCCCCcEEEcccCcCCCCCCc-CcCCCCCCCEEEcCCCCCC--CCccC-c
Q 038525           52 FRSLQLGWYHIELVECSIKG--ELGSLNFSCFSNLQYINLWNNDLSGSIPP-QIGSLLKLKYLNLRWKNLT--EIGKI-L  125 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~--~~~p~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~l~~L~~L~ls~n~l~--~~~~l-~  125 (165)
                      +..++ +|++|++++|++++  .+ |..+..+++|++|++++|.+++.+|. .+..+++|+.|++++|+++  .+..+ +
T Consensus       373 ~~~l~-~L~~L~L~~N~l~~~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~  450 (562)
T 3a79_B          373 CSTLK-RLQTLILQRNGLKNFFKV-ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP  450 (562)
T ss_dssp             CCSCS-SCCEEECCSSCCCBTTHH-HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCT
T ss_pred             hcccC-CCCEEECCCCCcCCcccc-hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcC
Confidence            34455 56666666666653  22 34456666666666666666643443 2445555555555555554  12222 3


Q ss_pred             CCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525          126 LLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       126 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      +|+.|++++|+++ .+|..+..+++|++|++++|+
T Consensus       451 ~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~  484 (562)
T 3a79_B          451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ  484 (562)
T ss_dssp             TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSC
T ss_pred             cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCC
Confidence            4444444444444 334333344444444444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.58  E-value=2e-14  Score=100.13  Aligned_cols=83  Identities=19%  Similarity=0.113  Sum_probs=75.3

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL  132 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l  132 (165)
                      ++++|++++|.+++.. |..|..+++|++|++++|++++..|..|..+++|++|++++|+++     .+..+++|++|++
T Consensus        31 ~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           31 TTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCcCCccC-hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            6779999999999776 889999999999999999999766667899999999999999998     4889999999999


Q ss_pred             cCCCCCCcc
Q 038525          133 SHNNLSDSQ  141 (165)
Q Consensus       133 s~N~l~~~~  141 (165)
                      ++|.+....
T Consensus       110 ~~N~~~c~c  118 (170)
T 3g39_A          110 LNNPWDCAC  118 (170)
T ss_dssp             CSSCBCTTB
T ss_pred             CCCCCCCCc
Confidence            999998654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.58  E-value=2.6e-14  Score=108.24  Aligned_cols=101  Identities=18%  Similarity=0.294  Sum_probs=46.3

Q ss_pred             hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCC
Q 038525           52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQ  128 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~  128 (165)
                      +..++ +|++|++++|.+.+ + + .+..+++|++|++++|.+++ +|. +..+++|+.|++++|.++   .+..+++|+
T Consensus        81 ~~~l~-~L~~L~L~~n~l~~-~-~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~  154 (308)
T 1h6u_A           81 LKNLT-KITELELSGNPLKN-V-S-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQ  154 (308)
T ss_dssp             GTTCC-SCCEEECCSCCCSC-C-G-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCC
T ss_pred             HccCC-CCCEEEccCCcCCC-c-h-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCccccCCCCcc
Confidence            44444 55555555555542 2 2 34555555555555555542 222 444555555555555444   233444444


Q ss_pred             EEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525          129 NLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       129 ~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      .|++++|.+++ ++. +..+++|+.|++++|+
T Consensus       155 ~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          155 YLSIGNAQVSD-LTP-LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred             EEEccCCcCCC-Chh-hcCCCCCCEEECCCCc
Confidence            44444444442 221 3444444444444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.58  E-value=3.1e-15  Score=127.25  Aligned_cols=108  Identities=15%  Similarity=0.143  Sum_probs=87.4

Q ss_pred             hhhccccCeeEEEeecCCCCc-----------------ccCCcccC--CCCCCcEEEcccCcCCCCCCcCcCCCCCCCEE
Q 038525           51 CFRSLQLGWYHIELVECSIKG-----------------ELGSLNFS--CFSNLQYINLWNNDLSGSIPPQIGSLLKLKYL  111 (165)
Q Consensus        51 ~~~~l~~~L~~L~ls~n~l~~-----------------~~~p~~~~--~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L  111 (165)
                      .+..++ +|++|++++|.+++                 .+ |..++  .+++|++|++++|.+.+.+|..++.+++|+.|
T Consensus       443 ~l~~L~-~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i-P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L  520 (876)
T 4ecn_A          443 AIQRLT-KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE-NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL  520 (876)
T ss_dssp             GGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred             HHhcCC-CCCEEECcCCcCCCCcccccccccccccccccC-ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence            366677 78899999999887                 37 77877  89999999999998888889888889999999


Q ss_pred             EcCCCC-CC------CCccC-------cCCCEEeccCCCCCCcccc--cccCCCCCcEEEccCCcc
Q 038525          112 NLRWKN-LT------EIGKI-------LLLQNLDLSHNNLSDSQFR--FVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       112 ~ls~n~-l~------~~~~l-------~~L~~L~ls~N~l~~~~p~--~~~~l~~L~~L~l~~n~~  161 (165)
                      ++++|+ ++      .++.+       ++|+.|++++|.++ .+|.  .+.++++|+.|++++|+.
T Consensus       521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l  585 (876)
T 4ecn_A          521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV  585 (876)
T ss_dssp             ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCC
T ss_pred             ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCc
Confidence            999887 64      23333       48888888888888 7777  788888888888888865

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.58  E-value=9.1e-15  Score=117.30  Aligned_cols=122  Identities=15%  Similarity=-0.032  Sum_probs=101.1

Q ss_pred             cccccccccCCC---chhhhhccccCeeEEEeecCCCCcccCCcccC-CCCCCcEEEcccCcCCCCCCcCcCCCCCCCEE
Q 038525           36 SFTQQRLVEGQD---SSQCFRSLQLGWYHIELVECSIKGELGSLNFS-CFSNLQYINLWNNDLSGSIPPQIGSLLKLKYL  111 (165)
Q Consensus        36 ~l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~-~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L  111 (165)
                      +|..+.+..+.+   ++..+..++ +|++|++++|.+++.. |..+. .+++|++|++++|.+++. |. ...+++|+.|
T Consensus       121 ~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~-~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L  196 (487)
T 3oja_A          121 GKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVN-FAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL  196 (487)
T ss_dssp             SCEEEECCSSCCCSGGGBCGGGGS-SEEEEECTTSCCCEEE-GGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred             CCCEEECCCCCCCCCCchhhcCCC-CCCEEECCCCCCCCcC-hHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEE
Confidence            344444444443   344566777 8999999999999877 77776 799999999999999955 43 4469999999


Q ss_pred             EcCCCCCC----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          112 NLRWKNLT----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       112 ~ls~n~l~----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      ++++|.++    .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|...
T Consensus       197 ~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             ECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred             ECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence            99999998    6788999999999999999 57888999999999999999865

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.57  E-value=3.8e-14  Score=107.37  Aligned_cols=96  Identities=20%  Similarity=0.257  Sum_probs=45.2

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSH  134 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~  134 (165)
                      +|++|++++|.+.+ + +. +..+++|++|++++|.+++ +| .+..+++|+.|++++|.++   .+..+++|++|++++
T Consensus        64 ~L~~L~L~~n~i~~-~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~  138 (308)
T 1h6u_A           64 NLIGLELKDNQITD-L-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL  138 (308)
T ss_dssp             TCCEEECCSSCCCC-C-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred             CCCEEEccCCcCCC-C-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCC
Confidence            44455555555442 2 22 4455555555555555542 22 3444555555555555544   344444555555555


Q ss_pred             CCCCCcccccccCCCCCcEEEccCCc
Q 038525          135 NNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       135 N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      |.+++..+  +..+++|++|++++|+
T Consensus       139 n~l~~~~~--l~~l~~L~~L~l~~n~  162 (308)
T 1h6u_A          139 NQITNISP--LAGLTNLQYLSIGNAQ  162 (308)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             CccCcCcc--ccCCCCccEEEccCCc
Confidence            55543221  4445555555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=2.8e-14  Score=99.59  Aligned_cols=95  Identities=21%  Similarity=0.163  Sum_probs=82.5

Q ss_pred             CCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----C
Q 038525           46 QDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----E  120 (165)
Q Consensus        46 ~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~  120 (165)
                      .++...+..++ +|++|++++|.+++.. +..|..+++|++|++++|.+++..+..+..+++|++|++++|.++     .
T Consensus        42 ~~~~~~~~~l~-~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  119 (177)
T 2o6r_A           42 SLPHGVFDKLT-QLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI  119 (177)
T ss_dssp             CCCTTTTTTCT-TCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             EeCHHHhcCcc-cccEEECCCCcceEeC-hhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHH
Confidence            44556677777 8999999999999555 777899999999999999999766677889999999999999998     4


Q ss_pred             CccCcCCCEEeccCCCCCCccc
Q 038525          121 IGKILLLQNLDLSHNNLSDSQF  142 (165)
Q Consensus       121 ~~~l~~L~~L~ls~N~l~~~~p  142 (165)
                      +..+++|++|++++|.+.+..|
T Consensus       120 ~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          120 FDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTTCTTCCEEECCSSCBCCCHH
T ss_pred             hcCCcccCEEEecCCCeeccCc
Confidence            6789999999999999987665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.57  E-value=1.4e-14  Score=110.40  Aligned_cols=103  Identities=17%  Similarity=0.143  Sum_probs=55.5

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcCCCEEecc
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLS  133 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls  133 (165)
                      +|++|++++|.+.+.. +..+..+++|++|++++|.+++..|..+..+++|+.|++++|+++    .+..+++|+.|+++
T Consensus       194 ~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          194 TLNELHLDHNKIQAIE-LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             SCSCCBCCSSCCCCCC-TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccC-HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECC
Confidence            4445555555555443 455555556666666666655444445555556666666665555    34555555666666


Q ss_pred             CCCCCCcccccccCC------CCCcEEEccCCcc
Q 038525          134 HNNLSDSQFRFVIPY------LRLSVQCVWTCHS  161 (165)
Q Consensus       134 ~N~l~~~~p~~~~~l------~~L~~L~l~~n~~  161 (165)
                      +|++++..+..|...      ..|+.+++++|..
T Consensus       273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~  306 (332)
T 2ft3_A          273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV  306 (332)
T ss_dssp             SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred             CCCCCccChhHccccccccccccccceEeecCcc
Confidence            655554333333332      3455555555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.57  E-value=1e-14  Score=101.92  Aligned_cols=100  Identities=16%  Similarity=0.145  Sum_probs=74.9

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccCcCCCEEe
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKILLLQNLD  131 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l~~L~~L~  131 (165)
                      +|++|++++|.+++ +  ..+..+++|++|++++|.+++..|..+..+++|++|++++|.++      .+..+++|+.|+
T Consensus        43 ~L~~L~Ls~N~l~~-~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRK-L--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCE-E--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCc-c--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEE
Confidence            67788888888874 3  36778888888888888888443344477888888888888876      356677888888


Q ss_pred             ccCCCCCCccccc----ccCCCCCcEEEccCCcc
Q 038525          132 LSHNNLSDSQFRF----VIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       132 ls~N~l~~~~p~~----~~~l~~L~~L~l~~n~~  161 (165)
                      +++|.++ .+|..    +..+++|++|++++|+.
T Consensus       120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            8888887 45653    77888888888887753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.56  E-value=4e-14  Score=106.47  Aligned_cols=121  Identities=17%  Similarity=0.184  Sum_probs=98.0

Q ss_pred             cccccccccccCCCc-hhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 038525           34 KTSFTQQRLVEGQDS-SQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLN  112 (165)
Q Consensus        34 l~~l~~~~~~~~~~~-~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~  112 (165)
                      ++.++...+..+.+. ...+..++ +|++|++++|.+++.. +  +..+++|++|++++|.+++ +| .+..+++|++|+
T Consensus        45 l~~L~~L~l~~~~i~~~~~~~~l~-~L~~L~L~~n~l~~~~-~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQGIQYLP-NVTKLFLNGNKLTDIK-P--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCT-TCCEEECCSSCCCCCG-G--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             cCcccEEEccCCCcccChhHhcCC-CCCEEEccCCccCCCc-c--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence            344555555444332 12256677 8999999999999543 3  9999999999999999984 44 489999999999


Q ss_pred             cCCCCCC---CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          113 LRWKNLT---EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       113 ls~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      +++|+++   .+..+++|+.|++++|.+++.  ..+..+++|+.|++++|+..
T Consensus       119 L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~  169 (291)
T 1h6t_A          119 LEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  169 (291)
T ss_dssp             CTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             CCCCcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence            9999998   678899999999999999864  57899999999999999863

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.56  E-value=2.9e-14  Score=108.97  Aligned_cols=104  Identities=19%  Similarity=0.281  Sum_probs=72.4

Q ss_pred             hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCC
Q 038525           52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQ  128 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~  128 (165)
                      +..++ +|++|++++|.+.+.  +. +..+++|++|++++|.+++ + +.+..+++|+.|++++|.++   .+..+++|+
T Consensus       217 ~~~~~-~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~  290 (347)
T 4fmz_A          217 VANMT-RLNSLKIGNNKITDL--SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDISVLNNLSQLN  290 (347)
T ss_dssp             GGGCT-TCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             hhcCC-cCCEEEccCCccCCC--cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCChhhcCCCCCC
Confidence            44555 677777777777643  22 6777777777777777763 3 35667777777777777776   456677777


Q ss_pred             EEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          129 NLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       129 ~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      .|++++|.+++..|+.+..+++|++|++++|+.
T Consensus       291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  323 (347)
T 4fmz_A          291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI  323 (347)
T ss_dssp             EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred             EEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence            777777777766666777777777777777764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=5e-15  Score=103.46  Aligned_cols=103  Identities=16%  Similarity=0.109  Sum_probs=87.7

Q ss_pred             hccccCeeEEEeecCCCCcccCCcccCCCC-CCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----C-CccCcC
Q 038525           53 RSLQLGWYHIELVECSIKGELGSLNFSCFS-NLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----E-IGKILL  126 (165)
Q Consensus        53 ~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~-~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~-~~~l~~  126 (165)
                      .... ++++|++++|.+. .+ |. +..+. +|++|++++|.+++.  +.+..+++|++|++++|.++    . +..+++
T Consensus        16 ~~~~-~L~~L~l~~n~l~-~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           16 TNAV-RDRELDLRGYKIP-VI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             ECTT-SCEEEECTTSCCC-SC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             CCcC-CceEEEeeCCCCc-hh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            3444 7889999999998 56 54 44444 999999999999954  67899999999999999998    2 478999


Q ss_pred             CCEEeccCCCCCCcccc--cccCCCCCcEEEccCCccC
Q 038525          127 LQNLDLSHNNLSDSQFR--FVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       127 L~~L~ls~N~l~~~~p~--~~~~l~~L~~L~l~~n~~~  162 (165)
                      |++|++++|.++ .+|.  .+..+++|+.|++++|+..
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence            999999999997 5676  8899999999999999863

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.56  E-value=3.3e-14  Score=117.32  Aligned_cols=112  Identities=13%  Similarity=0.071  Sum_probs=63.3

Q ss_pred             CchhhhhccccCeeEEEeecCCCCcccCCcccCCCC-------CCcEEEcccCcCCCCCCcCcC--CCCCCCEEEcCCCC
Q 038525           47 DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFS-------NLQYINLWNNDLSGSIPPQIG--SLLKLKYLNLRWKN  117 (165)
Q Consensus        47 ~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~-------~L~~L~ls~N~l~~~~p~~~~--~l~~L~~L~ls~n~  117 (165)
                      ++...+..++ +|++|++++|.++ .+++..+....       +|++|++++|.++ .+|..+.  .+++|+.|++++|+
T Consensus       448 lp~~~~~~l~-~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~  524 (636)
T 4eco_A          448 FPKELFSTGS-PLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS  524 (636)
T ss_dssp             CCTHHHHTTC-CCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC
T ss_pred             CCHHHHccCC-CCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC
Confidence            3444455555 5666666666666 44122222222       5666666666666 5555554  56666666666666


Q ss_pred             CC----CCccCcCCCEEec------cCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          118 LT----EIGKILLLQNLDL------SHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       118 l~----~~~~l~~L~~L~l------s~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      ++    .+..+++|+.|++      ++|++.+.+|..+..+++|+.|++++|+.
T Consensus       525 l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          525 FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             CCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence            65    4455566666666      34555556666666666666666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.56  E-value=3.3e-14  Score=105.52  Aligned_cols=119  Identities=19%  Similarity=0.188  Sum_probs=96.5

Q ss_pred             cccccccccccCCCchh-hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 038525           34 KTSFTQQRLVEGQDSSQ-CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLN  112 (165)
Q Consensus        34 l~~l~~~~~~~~~~~~~-~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~  112 (165)
                      ++.|..+++..+.+... .+..++ +|++|++++|++++ + |. +.. ++|++|++++|.+++ +| .+..+++|+.|+
T Consensus        62 l~~L~~L~L~~N~i~~~~~l~~l~-~L~~L~L~~N~l~~-l-~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~  134 (263)
T 1xeu_A           62 FTNLKELHLSHNQISDLSPLKDLT-KLEELSVNRNRLKN-L-NG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILS  134 (263)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCS-SCCEEECCSSCCSC-C-TT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCCChhhccCC-CCCEEECCCCccCC-c-Cc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEE
Confidence            44455555555544211 177777 89999999999985 4 43 333 999999999999995 44 589999999999


Q ss_pred             cCCCCCC---CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          113 LRWKNLT---EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       113 ls~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      +++|+++   .+..+++|+.|++++|.+++.  ..+..+++|+.|++++|+.
T Consensus       135 Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          135 IRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             CTTSCCCBCGGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred             CCCCcCCCChHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence            9999998   678899999999999999865  6789999999999999975

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=3.8e-15  Score=126.73  Aligned_cols=131  Identities=13%  Similarity=0.175  Sum_probs=81.0

Q ss_pred             cccCCC--ccccccccccccCCC---chhhhhccccCeeEEEeecCC-CCc-ccCCcccCCCC-------CCcEEEcccC
Q 038525           27 VAASEN--RKTSFTQQRLVEGQD---SSQCFRSLQLGWYHIELVECS-IKG-ELGSLNFSCFS-------NLQYINLWNN   92 (165)
Q Consensus        27 ~~~~~~--~l~~l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~-l~~-~~~p~~~~~l~-------~L~~L~ls~N   92 (165)
                      +|....  ++++|..+++..+.+   .+..+..++ +|++|++++|+ +++ .+ |..++.++       +|+.|++++|
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~-~L~~L~Ls~N~~lsg~~i-P~~i~~L~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNRGISAAQL-KADWTRLADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS-SCCEEECTTCTTSCHHHH-HHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCC-CCCEEECcCCCCcccccc-hHHHHhhhhcccccCCccEEEeeCC
Confidence            444544  566666665543322   123455666 67777777776 665 55 55444333       6777777777


Q ss_pred             cCCCCCCc--CcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccCCCCCCcccccccCCCC-CcEEEccCCcc
Q 038525           93 DLSGSIPP--QIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSHNNLSDSQFRFVIPYLR-LSVQCVWTCHS  161 (165)
Q Consensus        93 ~l~~~~p~--~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~-L~~L~l~~n~~  161 (165)
                      .++ .+|.  .++.+++|+.|++++|.++   .++.+++|+.|++++|.++ .+|..+..+++ |+.|++++|+.
T Consensus       559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L  631 (876)
T 4ecn_A          559 NLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL  631 (876)
T ss_dssp             CCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC
T ss_pred             cCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC
Confidence            776 6666  6667777777777777666   4556666666666666666 56666666666 66666666653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.55  E-value=5.8e-14  Score=115.39  Aligned_cols=102  Identities=25%  Similarity=0.269  Sum_probs=59.0

Q ss_pred             hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCC
Q 038525           52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQ  128 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~  128 (165)
                      +..++ +|++|++++|.+.+ + | .+..+++|+.|++++|.+++ + +.+..+++|+.|++++|.++   .+..+++|+
T Consensus        83 l~~l~-~L~~L~Ls~N~l~~-l-~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~  156 (605)
T 1m9s_A           83 LTNLK-NLGWLFLDENKIKD-L-S-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLD  156 (605)
T ss_dssp             GGGCT-TCCEEECCSSCCCC-C-T-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCS
T ss_pred             hccCC-CCCEEECcCCCCCC-C-h-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCchhhcccCCCC
Confidence            44444 55566666665552 2 2 45556666666666666653 2 23555666666666666655   455566666


Q ss_pred             EEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          129 NLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       129 ~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      .|+|++|.+++..|  +..+++|+.|++++|+.
T Consensus       157 ~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          157 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence            66666666665444  56666666666666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.54  E-value=2.7e-14  Score=109.43  Aligned_cols=97  Identities=18%  Similarity=0.111  Sum_probs=58.0

Q ss_pred             EEEeecC-CCCcccCCcccCCCCCCcEEEccc-CcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEecc
Q 038525           61 HIELVEC-SIKGELGSLNFSCFSNLQYINLWN-NDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLS  133 (165)
Q Consensus        61 ~L~ls~n-~l~~~~~p~~~~~l~~L~~L~ls~-N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls  133 (165)
                      .++.+++ .++ .+ |. +..+++|++|+|++ |.+++..|..|+.+++|+.|+|++|+|+     .|.++++|+.|+|+
T Consensus        12 ~v~~~~~n~l~-~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALD-SL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCT-TT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCC-cc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            3455665 555 35 55 66666666666664 6666555556666666666666666665     45566666666666


Q ss_pred             CCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          134 HNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       134 ~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      +|+|++..+..+..+. |+.|++++|+.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCc
Confidence            6666644444444333 66666666653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.54  E-value=1.1e-14  Score=110.29  Aligned_cols=107  Identities=13%  Similarity=-0.007  Sum_probs=79.6

Q ss_pred             hccccCeeEEEeecCCCCcccCC----cccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---------
Q 038525           53 RSLQLGWYHIELVECSIKGELGS----LNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---------  119 (165)
Q Consensus        53 ~~l~~~L~~L~ls~n~l~~~~~p----~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---------  119 (165)
                      ..++ +|++|++++|.+.+.. +    ..+..+++|++|++++|.+++..|..++.+++|++|++++|++.         
T Consensus       114 ~~~~-~L~~L~Ls~n~i~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  191 (310)
T 4glp_A          114 ATGL-ALSSLRLRNVSWATGR-SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL  191 (310)
T ss_dssp             CCCB-CCSSCEEESCCCSSTT-SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS
T ss_pred             ccCC-CCCEEEeecccccchh-hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHH
Confidence            4455 6777788888777544 3    33456788888888888888777778888888888888888864         


Q ss_pred             CCccCcCCCEEeccCCCCCCcccc----cccCCCCCcEEEccCCccC
Q 038525          120 EIGKILLLQNLDLSHNNLSDSQFR----FVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       120 ~~~~l~~L~~L~ls~N~l~~~~p~----~~~~l~~L~~L~l~~n~~~  162 (165)
                      .++.+++|++|++++|+++ .+|.    .+..+++|++|++++|+..
T Consensus       192 ~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~  237 (310)
T 4glp_A          192 CPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLR  237 (310)
T ss_dssp             CTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCC
T ss_pred             hhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCC
Confidence            2367888888888888886 3443    2567788899999888753

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.53  E-value=1e-13  Score=96.91  Aligned_cols=82  Identities=20%  Similarity=0.140  Sum_probs=74.0

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL  132 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l  132 (165)
                      ++++|++++|.+++.. |..|..+++|++|++++|++++..+..|..+++|++|++++|+++     .+..+++|++|++
T Consensus        34 ~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCcEEEeCCCCccccC-HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            6779999999999777 889999999999999999999655556789999999999999998     4888999999999


Q ss_pred             cCCCCCCc
Q 038525          133 SHNNLSDS  140 (165)
Q Consensus       133 s~N~l~~~  140 (165)
                      ++|.+...
T Consensus       113 ~~N~~~c~  120 (174)
T 2r9u_A          113 YNNPWDCE  120 (174)
T ss_dssp             CSSCBCTT
T ss_pred             CCCCcccc
Confidence            99999843

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.52  E-value=1.2e-13  Score=113.60  Aligned_cols=121  Identities=18%  Similarity=0.196  Sum_probs=99.6

Q ss_pred             cccccccccccCCCch-hhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 038525           34 KTSFTQQRLVEGQDSS-QCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLN  112 (165)
Q Consensus        34 l~~l~~~~~~~~~~~~-~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~  112 (165)
                      +..|..+.+..+.+.. ..+..++ +|++|++++|.+.+.. |  +..+++|+.|++++|.+++ +| .+..+++|+.|+
T Consensus        42 L~~L~~L~l~~n~i~~l~~l~~l~-~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQGIQYLP-NVTKLFLNGNKLTDIK-P--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS  115 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTTGGGCT-TCCEEECTTSCCCCCG-G--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred             CCCCCEEECcCCCCCCChHHccCC-CCCEEEeeCCCCCCCh-h--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence            4445555554444321 2367777 8999999999999644 4  8999999999999999984 44 789999999999


Q ss_pred             cCCCCCC---CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          113 LRWKNLT---EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       113 ls~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      +++|.++   .+..+++|+.|+|++|.+++.  ..+..+++|+.|++++|+..
T Consensus       116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A          116 LEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred             ecCCCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence            9999998   688899999999999999864  57899999999999999863

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.51  E-value=9.8e-14  Score=106.05  Aligned_cols=121  Identities=18%  Similarity=0.197  Sum_probs=96.7

Q ss_pred             cccccccccccCCCchh-hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 038525           34 KTSFTQQRLVEGQDSSQ-CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLN  112 (165)
Q Consensus        34 l~~l~~~~~~~~~~~~~-~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~  112 (165)
                      +++|...++..+.+... .+..++ +|++|++++|.+.+ +  ..+..+++|++|++++|.+++ + +.+..+++|+.|+
T Consensus       220 ~~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~  293 (347)
T 4fmz_A          220 MTRLNSLKIGNNKITDLSPLANLS-QLTWLEIGTNQISD-I--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLF  293 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCC-C--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEE
T ss_pred             CCcCCEEEccCCccCCCcchhcCC-CCCEEECCCCccCC-C--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEE
Confidence            34455555544444221 266777 89999999999984 3  368999999999999999995 4 4588999999999


Q ss_pred             cCCCCCC-----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          113 LRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       113 ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      +++|+++     .++.+++|++|++++|.+++..|  +..+++|+.|++++|+..
T Consensus       294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            9999998     57889999999999999997665  889999999999999853

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.50  E-value=3.1e-15  Score=125.23  Aligned_cols=111  Identities=25%  Similarity=0.331  Sum_probs=92.5

Q ss_pred             CCccccccccccccC---CCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCC
Q 038525           31 ENRKTSFTQQRLVEG---QDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLK  107 (165)
Q Consensus        31 ~~~l~~l~~~~~~~~---~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~  107 (165)
                      ...+..|..+++..+   .++...+ .++ +|++|+|++|.++ .+ |..|+.+++|++|+|++|.|+ .+|..|+.+++
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~-~L~~L~Ls~N~l~-~l-p~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~  294 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISANIF-KYD-FLTRLYLNGNSLT-EL-PAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ  294 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCGGGG-GCC-SCSCCBCTTSCCS-CC-CGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred             hccCCCCcEEECCCCCCCCCChhhc-CCC-CCCEEEeeCCcCc-cc-ChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence            334455555555443   3455554 567 7999999999999 88 889999999999999999999 88999999999


Q ss_pred             CCEEEcCCCCCC----CCccCcCCCEEeccCCCCCCccccccc
Q 038525          108 LKYLNLRWKNLT----EIGKILLLQNLDLSHNNLSDSQFRFVI  146 (165)
Q Consensus       108 L~~L~ls~n~l~----~~~~l~~L~~L~ls~N~l~~~~p~~~~  146 (165)
                      |++|+|++|.++    .|+.+++|+.|+|++|.+++.+|..+.
T Consensus       295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred             CCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence            999999999998    688999999999999999988887664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.49  E-value=1.5e-13  Score=109.26  Aligned_cols=101  Identities=21%  Similarity=0.278  Sum_probs=46.6

Q ss_pred             hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCC
Q 038525           52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQ  128 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~  128 (165)
                      +..++ +|++|++++|.+.+.. +  +..+++|++|++++|.+++..|  +..+++|+.|++++|+++   .+..+++|+
T Consensus       261 ~~~l~-~L~~L~l~~n~l~~~~-~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~  334 (466)
T 1o6v_A          261 LSGLT-KLTELKLGANQISNIS-P--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQ  334 (466)
T ss_dssp             GTTCT-TCSEEECCSSCCCCCG-G--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCC
T ss_pred             hhcCC-CCCEEECCCCccCccc-c--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCC
Confidence            34444 4555555555555322 2  4555555555555555553222  444555555555555444   233444444


Q ss_pred             EEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525          129 NLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       129 ~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      .|++++|.+++.  ..+..+++|+.|++++|+
T Consensus       335 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          335 RLFFYNNKVSDV--SSLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             EEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             EeECCCCccCCc--hhhccCCCCCEEeCCCCc
Confidence            444444444422  233444444444444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.48  E-value=5.1e-13  Score=106.38  Aligned_cols=97  Identities=26%  Similarity=0.284  Sum_probs=52.8

Q ss_pred             hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC--CCccCcCCCE
Q 038525           52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT--EIGKILLLQN  129 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~--~~~~l~~L~~  129 (165)
                      +..++ +|++|++++|.+++ + |  ++.+++|++|++++|.+++. |  ++.+++|++|++++|+++  .++.+++|++
T Consensus        60 l~~l~-~L~~L~Ls~n~l~~-~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~  131 (457)
T 3bz5_A           60 IEKLT-GLTKLICTSNNITT-L-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTY  131 (457)
T ss_dssp             GGGCT-TCSEEECCSSCCSC-C-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCCCCTTCTTCCE
T ss_pred             hcccC-CCCEEEccCCcCCe-E-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCeecCCCCCcCCE
Confidence            44445 56666666666653 3 3  55566666666666666532 2  555666666666666555  4455555555


Q ss_pred             EeccCCCCCCcccccccCCCCCcEEEccCC
Q 038525          130 LDLSHNNLSDSQFRFVIPYLRLSVQCVWTC  159 (165)
Q Consensus       130 L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n  159 (165)
                      |++++|.+++ +|  +..+++|++|++++|
T Consensus       132 L~l~~N~l~~-l~--l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          132 LNCARNTLTE-ID--VSHNTQLTELDCHLN  158 (457)
T ss_dssp             EECTTSCCSC-CC--CTTCTTCCEEECTTC
T ss_pred             EECCCCccce-ec--cccCCcCCEEECCCC
Confidence            5555555553 22  344444444444444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.48  E-value=5.6e-13  Score=106.15  Aligned_cols=78  Identities=21%  Similarity=0.183  Sum_probs=53.5

Q ss_pred             cCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC--CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEE
Q 038525           78 FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT--EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQC  155 (165)
Q Consensus        78 ~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~--~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~  155 (165)
                      ++.+++|++|++++|++++ +|  ++.+++|+.|++++|.++  .++.+++|+.|++++|++++ +|  +..+++|++|+
T Consensus       166 ~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~  239 (457)
T 3bz5_A          166 VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD  239 (457)
T ss_dssp             CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred             cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence            4556666666666666663 44  566667777777777766  56677777777777777775 45  66777777777


Q ss_pred             ccCCcc
Q 038525          156 VWTCHS  161 (165)
Q Consensus       156 l~~n~~  161 (165)
                      +++|+.
T Consensus       240 l~~N~l  245 (457)
T 3bz5_A          240 CSVNPL  245 (457)
T ss_dssp             CCSSCC
T ss_pred             eeCCcC
Confidence            777764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.48  E-value=3.9e-13  Score=106.91  Aligned_cols=96  Identities=23%  Similarity=0.306  Sum_probs=48.2

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSH  134 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~  134 (165)
                      +|++|++++|.+.+.. +  +..+++|+.|++++|.+++..|  +..+++|+.|++++|+++   .+..+++|+.|++++
T Consensus       288 ~L~~L~L~~n~l~~~~-~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~  362 (466)
T 1o6v_A          288 ALTNLELNENQLEDIS-P--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGH  362 (466)
T ss_dssp             TCSEEECCSSCCSCCG-G--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             ccCeEEcCCCcccCch-h--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCC
Confidence            4555555555555322 2  4455555555555555553332  444555555555555554   344455555555555


Q ss_pred             CCCCCcccccccCCCCCcEEEccCCc
Q 038525          135 NNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       135 N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      |++++..|  +..+++|+.|++++|+
T Consensus       363 n~l~~~~~--~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          363 NQISDLTP--LANLTRITQLGLNDQA  386 (466)
T ss_dssp             SCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred             CccCccch--hhcCCCCCEEeccCCc
Confidence            55554433  4455555555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.47  E-value=2e-13  Score=111.47  Aligned_cols=100  Identities=18%  Similarity=0.158  Sum_probs=87.0

Q ss_pred             hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccCc
Q 038525           52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKIL  125 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l~  125 (165)
                      +..++ +|++|++++|.++ .+ |..++.+++|+.|++++|.+++ +| .++.+++|+.|++++|+++      .++.++
T Consensus       459 ~~~l~-~L~~L~Ls~N~l~-~l-p~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~  533 (567)
T 1dce_A          459 LEQLL-LVTHLDLSHNRLR-AL-PPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP  533 (567)
T ss_dssp             GGGGT-TCCEEECCSSCCC-CC-CGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT
T ss_pred             ccccc-cCcEeecCccccc-cc-chhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC
Confidence            67777 8999999999999 88 8899999999999999999995 77 8999999999999999987      456889


Q ss_pred             CCCEEeccCCCCCCccccc---ccCCCCCcEEEc
Q 038525          126 LLQNLDLSHNNLSDSQFRF---VIPYLRLSVQCV  156 (165)
Q Consensus       126 ~L~~L~ls~N~l~~~~p~~---~~~l~~L~~L~l  156 (165)
                      +|+.|++++|.+++..|..   +..+++|+.|++
T Consensus       534 ~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          534 RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9999999999998654422   334789998864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=9.2e-16  Score=109.14  Aligned_cols=106  Identities=19%  Similarity=0.189  Sum_probs=91.7

Q ss_pred             hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCC
Q 038525           51 CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLL  127 (165)
Q Consensus        51 ~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L  127 (165)
                      .+..++ +|++|++++|.+.+ + | .+..+++|++|++++|.++ .+|..+..+++|++|++++|+++   .+..+++|
T Consensus        43 ~~~~l~-~L~~L~ls~n~l~~-l-~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLK-ACKHLALSTNNIEK-I-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNL  117 (198)
T ss_dssp             HHHHTT-TCSEEECSEEEESC-C-C-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHS
T ss_pred             HHhcCC-CCCEEECCCCCCcc-c-c-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCCccccCCCC
Confidence            467777 88999999999985 7 7 8899999999999999999 78887777899999999999998   66778899


Q ss_pred             CEEeccCCCCCCccc-ccccCCCCCcEEEccCCcc
Q 038525          128 QNLDLSHNNLSDSQF-RFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       128 ~~L~ls~N~l~~~~p-~~~~~l~~L~~L~l~~n~~  161 (165)
                      +.|++++|.+++..+ ..+..+++|++|++++|+.
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            999999999985332 4788999999999999975

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.41  E-value=2e-13  Score=106.00  Aligned_cols=126  Identities=16%  Similarity=0.125  Sum_probs=85.6

Q ss_pred             ccccccccccCCCch-------hhhhccccCeeEEEeecCCCC--c---ccCCcccCCCCCCcEEEcccCcCC----CCC
Q 038525           35 TSFTQQRLVEGQDSS-------QCFRSLQLGWYHIELVECSIK--G---ELGSLNFSCFSNLQYINLWNNDLS----GSI   98 (165)
Q Consensus        35 ~~l~~~~~~~~~~~~-------~~~~~l~~~L~~L~ls~n~l~--~---~~~p~~~~~l~~L~~L~ls~N~l~----~~~   98 (165)
                      ++|..+.+..+.+..       ..+..++ +|++|++++|.+.  |   .. |..+..+++|++|++++|.++    +.+
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~g~~~l~-~~~l~~~~~L~~L~Ls~n~l~~~g~~~l  236 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLL-LEGLAYCQELKVLDLQDNTFTHLGSSAL  236 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCHHHHHHHH-HTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCC-CcCEEECcCCCCCHhHHHHHH-HHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence            344444554444431       1233455 6778888888776  2   23 446777788888888888874    456


Q ss_pred             CcCcCCCCCCCEEEcCCCCCC---------CC--ccCcCCCEEeccCCCCCC----cccccc-cCCCCCcEEEccCCccC
Q 038525           99 PPQIGSLLKLKYLNLRWKNLT---------EI--GKILLLQNLDLSHNNLSD----SQFRFV-IPYLRLSVQCVWTCHST  162 (165)
Q Consensus        99 p~~~~~l~~L~~L~ls~n~l~---------~~--~~l~~L~~L~ls~N~l~~----~~p~~~-~~l~~L~~L~l~~n~~~  162 (165)
                      |..+..+++|+.|++++|.++         .+  +.+++|+.|++++|.+++    .+|..+ .++++|++|++++|+..
T Consensus       237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            777777888888888888876         12  347788888888888875    367666 55788888888888753

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.39  E-value=4.7e-12  Score=103.41  Aligned_cols=92  Identities=20%  Similarity=0.154  Sum_probs=56.4

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCCCc-cCcCCCEEeccCCC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIG-KILLLQNLDLSHNN  136 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~-~l~~L~~L~ls~N~  136 (165)
                      +|++|++++|.+++ + |. +..  +|++|++++|.+++ +|.   .+++|+.|++++|.++.+. .+++|+.|++++|.
T Consensus       101 ~L~~L~Ls~N~l~~-i-p~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~  171 (571)
T 3cvr_A          101 SLEYLDACDNRLST-L-PE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQ  171 (571)
T ss_dssp             TCCEEECCSSCCSC-C-CC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred             CCCEEEccCCCCCC-c-ch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCCcCCCcCEEECCCCC
Confidence            55566666666664 4 44 443  66666666666663 554   4566777777777666211 44567777777777


Q ss_pred             CCCcccccccCCCCCcEEEccCCccC
Q 038525          137 LSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       137 l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      +++ +|. +.  ++|+.|++++|++.
T Consensus       172 L~~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          172 LTF-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred             CCC-cch-hh--CCCCEEECcCCCCC
Confidence            764 555 44  66777777777643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.38  E-value=5.6e-14  Score=106.90  Aligned_cols=62  Identities=21%  Similarity=0.226  Sum_probs=30.6

Q ss_pred             hccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccC-cCCCC-CCcCcCCCCCCCEEEcCCC
Q 038525           53 RSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNN-DLSGS-IPPQIGSLLKLKYLNLRWK  116 (165)
Q Consensus        53 ~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N-~l~~~-~p~~~~~l~~L~~L~ls~n  116 (165)
                      ..++ +|++|++++|.+.+.. +..++.+++|++|++++| .+++. +|..+..+++|+.|++++|
T Consensus       115 ~~~~-~L~~L~L~~~~l~~~~-~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          115 SQCS-KLQNLSLEGLRLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             TTBC-CCSEEECTTCBCCHHH-HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             hhCC-CCCEEeCcCcccCHHH-HHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            3444 5555555555555444 445555555555555555 34421 3333444444444444444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.37  E-value=1.9e-12  Score=99.09  Aligned_cols=85  Identities=18%  Similarity=0.187  Sum_probs=73.1

Q ss_pred             hhccccCeeEEEeec-CCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCc
Q 038525           52 FRSLQLGWYHIELVE-CSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKIL  125 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~-n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~  125 (165)
                      +..++ +|++|+|++ |.+.+.. +..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|+|+     .+..++
T Consensus        27 l~~~~-~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~  104 (347)
T 2ifg_A           27 LPGAE-NLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS  104 (347)
T ss_dssp             SCSCS-CCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC
T ss_pred             CCCCC-CeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC
Confidence            45555 788999996 9999665 788999999999999999999888888999999999999999998     344444


Q ss_pred             CCCEEeccCCCCCC
Q 038525          126 LLQNLDLSHNNLSD  139 (165)
Q Consensus       126 ~L~~L~ls~N~l~~  139 (165)
                       |+.|++.+|.+..
T Consensus       105 -L~~l~l~~N~~~c  117 (347)
T 2ifg_A          105 -LQELVLSGNPLHC  117 (347)
T ss_dssp             -CCEEECCSSCCCC
T ss_pred             -ceEEEeeCCCccC
Confidence             9999999999874

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.37  E-value=1.5e-12  Score=100.03  Aligned_cols=113  Identities=15%  Similarity=0.081  Sum_probs=60.4

Q ss_pred             chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcE-EEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CC
Q 038525           48 SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQY-INLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EI  121 (165)
Q Consensus        48 ~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~-L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~  121 (165)
                      ++..|.+++ +|++|++++|++.+.+++..|.++++++. +.+++|++++..|..|..+++|++|++++|+++     .+
T Consensus        46 ~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~  124 (350)
T 4ay9_X           46 QKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK  124 (350)
T ss_dssp             CTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT
T ss_pred             CHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhh
Confidence            444555555 56666666666544442344555555543 344556665444555666666666666666655     22


Q ss_pred             ccCcCCCEEeccC-CCCCCcccccccCCC-CCcEEEccCCcc
Q 038525          122 GKILLLQNLDLSH-NNLSDSQFRFVIPYL-RLSVQCVWTCHS  161 (165)
Q Consensus       122 ~~l~~L~~L~ls~-N~l~~~~p~~~~~l~-~L~~L~l~~n~~  161 (165)
                      ....++..+++.+ |.+....+..|..+. .++.|++++|+.
T Consensus       125 ~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X          125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            3334455555543 344433333444443 466677777764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.36  E-value=6.2e-12  Score=102.69  Aligned_cols=95  Identities=12%  Similarity=0.038  Sum_probs=63.8

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCCCccC-cCC-------CE
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKI-LLL-------QN  129 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~l-~~L-------~~  129 (165)
                      +|++|++++|.+++ + |.   .+++|++|++++|.+++ +|. |.  ++|+.|++++|.++.+..+ .+|       +.
T Consensus       141 ~L~~L~Ls~N~l~~-l-p~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~  211 (571)
T 3cvr_A          141 LLEYINADNNQLTM-L-PE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIF  211 (571)
T ss_dssp             TCCEEECCSSCCSC-C-CC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCCCC--------CCEE
T ss_pred             cccEEeCCCCccCc-C-CC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhhHHHhhhcccccceE
Confidence            45566666666653 4 43   45667777777777774 565 54  6777888888777722111 156       88


Q ss_pred             EeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          130 LDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       130 L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      |++++|.++ .+|..+..+++|+.|++++|+..
T Consensus       212 L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          212 FRCRENRIT-HIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             EECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred             EecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence            888888888 57887888889999999988753

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.35  E-value=2.9e-12  Score=98.45  Aligned_cols=101  Identities=20%  Similarity=0.154  Sum_probs=64.6

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCC-cCcCCCCCCCE-EEcCCCCCC-----CCccCcCCCEE
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIP-PQIGSLLKLKY-LNLRWKNLT-----EIGKILLLQNL  130 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~-L~ls~n~l~-----~~~~l~~L~~L  130 (165)
                      ++++|++++|+++ .+++..|.++++|++|++++|.+.+.+| ..|.++++++. +.+.+|+++     .|..+++|++|
T Consensus        31 ~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           31 NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            4557777777777 3424567777777777777777654444 34566666654 445566666     46677777777


Q ss_pred             eccCCCCCCcccccccCCCCCcEEEccCC
Q 038525          131 DLSHNNLSDSQFRFVIPYLRLSVQCVWTC  159 (165)
Q Consensus       131 ~ls~N~l~~~~p~~~~~l~~L~~L~l~~n  159 (165)
                      ++++|.+++..+..+....++..+++.++
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~  138 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDN  138 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESC
T ss_pred             cccccccccCCchhhcccchhhhhhhccc
Confidence            77777776555555556666666666543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.34  E-value=2.2e-13  Score=105.76  Aligned_cols=103  Identities=16%  Similarity=0.114  Sum_probs=49.2

Q ss_pred             CeeEEEeecCCCC-cccCC---cccCCCCCCcEEEcccCcCCC-----CCCcCcCCCCCCCEEEcCCCCCC---------
Q 038525           58 GWYHIELVECSIK-GELGS---LNFSCFSNLQYINLWNNDLSG-----SIPPQIGSLLKLKYLNLRWKNLT---------  119 (165)
Q Consensus        58 ~L~~L~ls~n~l~-~~~~p---~~~~~l~~L~~L~ls~N~l~~-----~~p~~~~~l~~L~~L~ls~n~l~---------  119 (165)
                      +|++|++++|.+. +.+ +   ..+..+++|++|++++|.++.     ..|..+..+++|+.|++++|.++         
T Consensus       160 ~L~~L~L~~n~l~~~~~-~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          160 PLRSIICGRNRLENGSM-KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCEEECCSSCCTGGGH-HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCcEEECCCCCCCcHHH-HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            4445555555543 222 2   233344555555555555541     12224445555555555555552         


Q ss_pred             CCccCcCCCEEeccCCCCCCc----cccccc--CCCCCcEEEccCCcc
Q 038525          120 EIGKILLLQNLDLSHNNLSDS----QFRFVI--PYLRLSVQCVWTCHS  161 (165)
Q Consensus       120 ~~~~l~~L~~L~ls~N~l~~~----~p~~~~--~l~~L~~L~l~~n~~  161 (165)
                      .+..+++|++|++++|.+++.    +|..+.  .+++|+.|++++|+.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence            344555555555555555433    333442  255555555555543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.32  E-value=7e-11  Score=93.97  Aligned_cols=76  Identities=17%  Similarity=0.166  Sum_probs=48.4

Q ss_pred             CCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCCC-ccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525           82 SNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI-GKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus        82 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~~-~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      ++|++|++++|.+++ +| .++.+++|++|++++|+++.+ ....+|++|++++|.+++ +| .+.++++|++|++++|+
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~  206 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNS  206 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCc
Confidence            466777777777763 55 466777777777777776622 123466777777777664 45 46666666666666665


Q ss_pred             c
Q 038525          161 S  161 (165)
Q Consensus       161 ~  161 (165)
                      .
T Consensus       207 l  207 (454)
T 1jl5_A          207 L  207 (454)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.32  E-value=2.9e-11  Score=99.71  Aligned_cols=75  Identities=21%  Similarity=0.076  Sum_probs=61.9

Q ss_pred             CCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCCC-ccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525           82 SNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI-GKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus        82 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~~-~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      ++|++|++++|.++ .+|   ..+++|+.|++++|.++.+ ..+++|+.|++++|+++ .+|..+.++++|+.|++++|+
T Consensus       221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred             CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCC
Confidence            67888888888888 456   3567888999999988822 26678999999999998 778899999999999999997


Q ss_pred             c
Q 038525          161 S  161 (165)
Q Consensus       161 ~  161 (165)
                      .
T Consensus       296 l  296 (622)
T 3g06_A          296 L  296 (622)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.31  E-value=7e-13  Score=100.79  Aligned_cols=102  Identities=21%  Similarity=0.131  Sum_probs=71.2

Q ss_pred             CeeEEEeecCCCCcc-cCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCC-CCC------CCccCcCCCE
Q 038525           58 GWYHIELVECSIKGE-LGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWK-NLT------EIGKILLLQN  129 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n-~l~------~~~~l~~L~~  129 (165)
                      +|++|++++|.+.+. + |..+..+++|++|++++|.+++..|..++.+++|++|++++| .++      .+..+++|++
T Consensus        94 ~L~~L~L~~~~l~~~~~-~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           94 RVQHMDLSNSVIEVSTL-HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             CCCEEECTTCEECHHHH-HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCEEEccCCCcCHHHH-HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            566777777776644 5 666677777777777777776666666777777777777777 455      2556777777


Q ss_pred             EeccCC-CCCCc-ccccccCCC-CCcEEEccCCc
Q 038525          130 LDLSHN-NLSDS-QFRFVIPYL-RLSVQCVWTCH  160 (165)
Q Consensus       130 L~ls~N-~l~~~-~p~~~~~l~-~L~~L~l~~n~  160 (165)
                      |++++| .+++. ++..+..++ +|++|++++|+
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence            777777 77643 466667777 77777777774

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.30  E-value=4e-11  Score=95.38  Aligned_cols=98  Identities=16%  Similarity=0.074  Sum_probs=53.6

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCc-------------------CcCCCCCCCEEEcCCCCC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPP-------------------QIGSLLKLKYLNLRWKNL  118 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~-------------------~~~~l~~L~~L~ls~n~l  118 (165)
                      +|++|++++|.+++ + | .|+.+++|++|++++|++++ +|.                   .++.+++|++|++++|.+
T Consensus       132 ~L~~L~L~~n~l~~-l-p-~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l  207 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-L-P-ELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL  207 (454)
T ss_dssp             TCCEEECCSSCCSS-C-C-CCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             CCCEEECcCCCCCC-C-c-ccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcC
Confidence            45566666666653 4 4 35555555555555555552 332                   344455555555555554


Q ss_pred             CCCc-cCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          119 TEIG-KILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       119 ~~~~-~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      +.+. ..++|++|++++|.++ .+| .+..+++|++|++++|+.
T Consensus       208 ~~l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          208 KKLPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLL  249 (454)
T ss_dssp             SSCCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCC
T ss_pred             CcCCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcC
Confidence            4211 1235556666666665 455 366777777777777764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.28  E-value=4.6e-13  Score=103.35  Aligned_cols=104  Identities=16%  Similarity=0.131  Sum_probs=66.3

Q ss_pred             CeeEEEeecCCCCcccCCcc----cCCC-CCCcEEEcccCcCCCCCCcCc----CC-CCCCCEEEcCCCCCC--------
Q 038525           58 GWYHIELVECSIKGELGSLN----FSCF-SNLQYINLWNNDLSGSIPPQI----GS-LLKLKYLNLRWKNLT--------  119 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~----~~~l-~~L~~L~ls~N~l~~~~p~~~----~~-l~~L~~L~ls~n~l~--------  119 (165)
                      +|++|++++|.+++.. +..    +..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.++        
T Consensus        81 ~L~~L~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKS-SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TCCEEECCSSCGGGSC-HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CccEEECcCCcCChHH-HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            6777777777776544 443    3333 677777887777775444333    23 257788888888776        


Q ss_pred             -CCccCc-CCCEEeccCCCCCCcccccc----cCC-CCCcEEEccCCccC
Q 038525          120 -EIGKIL-LLQNLDLSHNNLSDSQFRFV----IPY-LRLSVQCVWTCHST  162 (165)
Q Consensus       120 -~~~~l~-~L~~L~ls~N~l~~~~p~~~----~~l-~~L~~L~l~~n~~~  162 (165)
                       .+..++ +|++|++++|.+++..+..+    ..+ ++|+.|++++|+..
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence             123343 78888888888765555433    334 47888888888753

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.26  E-value=1.6e-14  Score=102.74  Aligned_cols=100  Identities=16%  Similarity=0.143  Sum_probs=84.2

Q ss_pred             CeeEEEeecCCCCcccCCc------ccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcCC
Q 038525           58 GWYHIELVECSIKGELGSL------NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLL  127 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~------~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~L  127 (165)
                      .++.++++.+.+.+.. |.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++    .+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~-~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMI-PPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCC-TTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHC
T ss_pred             cccCcchheeEecccc-CcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcC
Confidence            4556666666666666 55      89999999999999999995 77 8899999999999999988    34456889


Q ss_pred             CEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          128 QNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       128 ~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      +.|++++|.+++ +| .+..+++|++|++++|+..
T Consensus        96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~  128 (198)
T 1ds9_A           96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT  128 (198)
T ss_dssp             SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC
T ss_pred             CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC
Confidence            999999999985 56 6888999999999999865

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.24  E-value=1.3e-12  Score=100.74  Aligned_cols=112  Identities=16%  Similarity=0.208  Sum_probs=84.4

Q ss_pred             hhhhccccCeeEEEeecCCCCcccCCcccCCC-----CCCcEEEcccCcCCCCCCcCc----CCC-CCCCEEEcCCCCCC
Q 038525           50 QCFRSLQLGWYHIELVECSIKGELGSLNFSCF-----SNLQYINLWNNDLSGSIPPQI----GSL-LKLKYLNLRWKNLT  119 (165)
Q Consensus        50 ~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l-----~~L~~L~ls~N~l~~~~p~~~----~~l-~~L~~L~ls~n~l~  119 (165)
                      ..+..++.+|++|++++|.+.+.. +..+..+     ++|++|++++|.+++..+..+    ..+ ++|++|++++|.++
T Consensus        44 ~~l~~~~~~L~~L~Ls~N~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  122 (362)
T 3goz_A           44 QAFANTPASVTSLNLSGNSLGFKN-SDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS  122 (362)
T ss_dssp             HHHHTCCTTCCEEECCSSCGGGSC-HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             HHHHhCCCceeEEECcCCCCCHHH-HHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence            345555546889999999998665 6666664     899999999999986666544    334 78999999999988


Q ss_pred             ---------CCcc-CcCCCEEeccCCCCCC----cccccccCCC-CCcEEEccCCccC
Q 038525          120 ---------EIGK-ILLLQNLDLSHNNLSD----SQFRFVIPYL-RLSVQCVWTCHST  162 (165)
Q Consensus       120 ---------~~~~-l~~L~~L~ls~N~l~~----~~p~~~~~l~-~L~~L~l~~n~~~  162 (165)
                               .+.. .++|++|++++|.+++    .++..+...+ +|++|++++|+..
T Consensus       123 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence                     1333 3689999999999974    3344455665 8999999999864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.22  E-value=1.4e-10  Score=95.54  Aligned_cols=72  Identities=22%  Similarity=0.213  Sum_probs=39.6

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCCC-ccCcCCCEEeccCCC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI-GKILLLQNLDLSHNN  136 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~~-~~l~~L~~L~ls~N~  136 (165)
                      +|++|++++|+++ .+ |.   .+++|++|++++|.++ .+|.   .+++|+.|++++|+++.+ ..+++|++|++++|.
T Consensus        82 ~L~~L~Ls~N~l~-~l-p~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~  152 (622)
T 3g06_A           82 ELRTLEVSGNQLT-SL-PV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ  152 (622)
T ss_dssp             TCCEEEECSCCCS-CC-CC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred             CCCEEEcCCCcCC-cC-CC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCc
Confidence            5667777777766 44 43   4566666666666666 3443   344555555555555411 123455555555555


Q ss_pred             CC
Q 038525          137 LS  138 (165)
Q Consensus       137 l~  138 (165)
                      ++
T Consensus       153 l~  154 (622)
T 3g06_A          153 LA  154 (622)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.20  E-value=1.1e-12  Score=103.66  Aligned_cols=106  Identities=13%  Similarity=0.026  Sum_probs=75.0

Q ss_pred             cccCeeEEEeecCCCCcccCCcccC-----CCCCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEcCCCCCC-----C
Q 038525           55 LQLGWYHIELVECSIKGELGSLNFS-----CFSNLQYINLWNNDLSGS----IPPQIGSLLKLKYLNLRWKNLT-----E  120 (165)
Q Consensus        55 l~~~L~~L~ls~n~l~~~~~p~~~~-----~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~ls~n~l~-----~  120 (165)
                      ++ +|++|++++|.+.+.. +..+.     ..++|++|++++|.+++.    +|..+..+++|+.|++++|.++     .
T Consensus       283 ~~-~L~~L~Ls~n~i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  360 (461)
T 1z7x_W          283 KE-SLKELSLAGNELGDEG-ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE  360 (461)
T ss_dssp             CT-TCCEEECTTCCCHHHH-HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred             CC-CcceEECCCCCCchHH-HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence            44 5667777777765332 22222     225777777777777644    3455666788999999998887     2


Q ss_pred             Ccc-----CcCCCEEeccCCCCCC----cccccccCCCCCcEEEccCCccC
Q 038525          121 IGK-----ILLLQNLDLSHNNLSD----SQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       121 ~~~-----l~~L~~L~ls~N~l~~----~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      +..     .++|++|++++|.+++    .+|..+..+++|++|++++|+..
T Consensus       361 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            221     5689999999999875    67888888999999999998753

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.17  E-value=4.8e-12  Score=99.96  Aligned_cols=103  Identities=12%  Similarity=0.035  Sum_probs=59.6

Q ss_pred             CeeEEEeecCCCCcccCCcccC-----CCCCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEcCCCCCC---------
Q 038525           58 GWYHIELVECSIKGELGSLNFS-----CFSNLQYINLWNNDLSGS----IPPQIGSLLKLKYLNLRWKNLT---------  119 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~-----~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~ls~n~l~---------  119 (165)
                      +|++|++++|.+.... +..+.     ..++|++|++++|.+++.    ++..+..+++|+.|++++|.++         
T Consensus       171 ~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~  249 (461)
T 1z7x_W          171 DFKELTVSNNDINEAG-VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP  249 (461)
T ss_dssp             TCCEEECCSSBCHHHH-HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             CCCEEECcCCCcchHH-HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH
Confidence            5556666666554322 22222     244666666666666532    3445555667777777777665         


Q ss_pred             -CCccCcCCCEEeccCCCCCCc----ccccccCCCCCcEEEccCCcc
Q 038525          120 -EIGKILLLQNLDLSHNNLSDS----QFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       120 -~~~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~l~~n~~  161 (165)
                       .+..+++|++|++++|.+++.    ++..+..+++|++|++++|+.
T Consensus       250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL  296 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred             HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence             112456677777777776632    455566667777777776653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.10  E-value=1.2e-11  Score=96.07  Aligned_cols=125  Identities=15%  Similarity=0.126  Sum_probs=82.6

Q ss_pred             cccccccccCCCchhh----hhccccCeeEEEeecCCCCcccCCccc-----CCCCCCcEEEcccCcCCCC----CCcCc
Q 038525           36 SFTQQRLVEGQDSSQC----FRSLQLGWYHIELVECSIKGELGSLNF-----SCFSNLQYINLWNNDLSGS----IPPQI  102 (165)
Q Consensus        36 ~l~~~~~~~~~~~~~~----~~~l~~~L~~L~ls~n~l~~~~~p~~~-----~~l~~L~~L~ls~N~l~~~----~p~~~  102 (165)
                      .|..+++..+.+....    ...++ ++++|++++|.+...- ...+     ...++|++|++++|.++..    ++..+
T Consensus       102 ~L~~L~Ls~n~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~~~~-~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLRTLLPVFL-RARKLGLQLNSLGPEA-CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             CEEEEECTTCCCCHHHHHHTHHHHH-TEEEEECCSSCCCHHH-HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHH-hccHhhcCCCCCCHHH-HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            4455555555554332    22344 6778888888876432 2333     2457788888888887631    33344


Q ss_pred             CCCCCCCEEEcCCCCCC---------CCccCcCCCEEeccCCCCCCc----ccccccCCCCCcEEEccCCccC
Q 038525          103 GSLLKLKYLNLRWKNLT---------EIGKILLLQNLDLSHNNLSDS----QFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       103 ~~l~~L~~L~ls~n~l~---------~~~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      ...++|++|++++|.++         .+...++|+.|++++|.++..    ++..+...++|++|++++|++.
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            66788888888888887         355667888888888888642    3344556788889998888753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.06  E-value=1.1e-09  Score=83.35  Aligned_cols=79  Identities=13%  Similarity=0.057  Sum_probs=55.6

Q ss_pred             CCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCC-EEeccCCCCCCcccccccCCCCCcEE
Q 038525           81 FSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQ-NLDLSHNNLSDSQFRFVIPYLRLSVQ  154 (165)
Q Consensus        81 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~-~L~ls~N~l~~~~p~~~~~l~~L~~L  154 (165)
                      +++|+.+++++|.++...+..|.++.+|+.+++++| ++     +|.++++|+ .+++.+ .++...+..|.++.+|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            567777777777777444456777777777777776 54     677777777 777777 5664555677777778877


Q ss_pred             EccCCcc
Q 038525          155 CVWTCHS  161 (165)
Q Consensus       155 ~l~~n~~  161 (165)
                      ++++|+.
T Consensus       303 ~l~~n~i  309 (329)
T 3sb4_A          303 LATGDKI  309 (329)
T ss_dssp             EECSSCC
T ss_pred             EeCCCcc
Confidence            7766653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.99  E-value=1.4e-09  Score=82.76  Aligned_cols=98  Identities=11%  Similarity=0.025  Sum_probs=85.8

Q ss_pred             cccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCC-EEEcCCCCCC-----CCccCcCCC
Q 038525           55 LQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLK-YLNLRWKNLT-----EIGKILLLQ  128 (165)
Q Consensus        55 l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~-~L~ls~n~l~-----~~~~l~~L~  128 (165)
                      .+ +|+++++++|+++ .+++..|.++++|+.+++++| ++..-+..|.++.+|+ .+++++ .++     +|.++++|+
T Consensus       225 ~~-~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MP-NLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CT-TCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred             cC-CCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence            44 7889999999998 454888999999999999998 7756667899999999 999998 565     899999999


Q ss_pred             EEeccCCCCCCcccccccCCCCCcEEEc
Q 038525          129 NLDLSHNNLSDSQFRFVIPYLRLSVQCV  156 (165)
Q Consensus       129 ~L~ls~N~l~~~~p~~~~~l~~L~~L~l  156 (165)
                      .+++++|.++...+..|.++++|+.++.
T Consensus       301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          301 YVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEEeCCCccCccchhhhcCCcchhhhcc
Confidence            9999999999776779999999999874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.92  E-value=4.7e-11  Score=92.79  Aligned_cols=104  Identities=16%  Similarity=0.119  Sum_probs=80.7

Q ss_pred             CeeEEEeecCCCCcccCCcc-cCCCCCCcEEEcccCcCCCCCCcCc-----CCCCCCCEEEcCCCCCC---------CCc
Q 038525           58 GWYHIELVECSIKGELGSLN-FSCFSNLQYINLWNNDLSGSIPPQI-----GSLLKLKYLNLRWKNLT---------EIG  122 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~-~~~l~~L~~L~ls~N~l~~~~p~~~-----~~l~~L~~L~ls~n~l~---------~~~  122 (165)
                      +|++|++++|.+.... ... ...+++|+.|++++|.++......+     ...+.|+.|++++|.++         .+.
T Consensus       102 ~L~~L~Ls~n~l~~~~-~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          102 ALDEVNLASCQLDPAG-LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             CEEEEECTTCCCCHHH-HHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CceEEEecCCCCCHHH-HHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            7999999999987432 222 2346789999999999974433333     34678999999999997         346


Q ss_pred             cCcCCCEEeccCCCCCCc----ccccccCCCCCcEEEccCCccC
Q 038525          123 KILLLQNLDLSHNNLSDS----QFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       123 ~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      ..++|++|+|++|.++..    +++.+...++|+.|++++|+..
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            788999999999998642    3566778889999999999864

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.88  E-value=3.9e-10  Score=79.34  Aligned_cols=108  Identities=9%  Similarity=0.016  Sum_probs=83.0

Q ss_pred             hhccccCeeEEEeecC-CCCcc----cCCcccCCCCCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEcCCCCCC---
Q 038525           52 FRSLQLGWYHIELVEC-SIKGE----LGSLNFSCFSNLQYINLWNNDLSGS----IPPQIGSLLKLKYLNLRWKNLT---  119 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n-~l~~~----~~p~~~~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~ls~n~l~---  119 (165)
                      +...+ .+++|++++| .+...    + ...+...++|++|++++|.+...    +...+...+.|++|++++|.++   
T Consensus        32 l~~~~-~L~~L~L~~n~~i~~~g~~~l-~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           32 QNNDP-DLEEVNLNNIMNIPVPTLKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HTTCT-TCCEEECTTCTTCCHHHHHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HhcCC-CCCEEEecCCCCCCHHHHHHH-HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            33444 6889999999 88632    3 44566778999999999998732    2334455688999999999998   


Q ss_pred             ------CCccCcCCCEEec--cCCCCCCc----ccccccCCCCCcEEEccCCcc
Q 038525          120 ------EIGKILLLQNLDL--SHNNLSDS----QFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       120 ------~~~~l~~L~~L~l--s~N~l~~~----~p~~~~~l~~L~~L~l~~n~~  161 (165)
                            .+...+.|++|++  ++|.+...    +.+.+...++|+.|++++|+.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence                  5677788999999  88999743    345566778999999999974

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.80  E-value=2.5e-09  Score=79.44  Aligned_cols=78  Identities=28%  Similarity=0.249  Sum_probs=61.4

Q ss_pred             CCCCCCcEEEcccCcCCC--CCCcCcCCCCCCCEEEcCCCCCC---CCccCc--CCCEEeccCCCCCCcccc-------c
Q 038525           79 SCFSNLQYINLWNNDLSG--SIPPQIGSLLKLKYLNLRWKNLT---EIGKIL--LLQNLDLSHNNLSDSQFR-------F  144 (165)
Q Consensus        79 ~~l~~L~~L~ls~N~l~~--~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~--~L~~L~ls~N~l~~~~p~-------~  144 (165)
                      ..+++|+.|+|++|.+++  .+|..+..+++|+.|+|++|+++   .+..+.  +|+.|++++|.+.+.+|+       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            457889999999999986  34566678899999999999998   344444  899999999999876652       4


Q ss_pred             ccCCCCCcEEEc
Q 038525          145 VIPYLRLSVQCV  156 (165)
Q Consensus       145 ~~~l~~L~~L~l  156 (165)
                      +..+++|+.|+-
T Consensus       247 l~~~P~L~~LDg  258 (267)
T 3rw6_A          247 RERFPKLLRLDG  258 (267)
T ss_dssp             HHHCTTCCEESS
T ss_pred             HHHCcccCeECC
Confidence            677888888874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.76  E-value=6.8e-10  Score=90.15  Aligned_cols=85  Identities=14%  Similarity=0.076  Sum_probs=53.4

Q ss_pred             cCCCCCCcEEEcccC--cCCCCCCcCcC-CCCCCCEEEcCCCCCC------CCccCcCCCEEeccCCCCCCc-ccccccC
Q 038525           78 FSCFSNLQYINLWNN--DLSGSIPPQIG-SLLKLKYLNLRWKNLT------EIGKILLLQNLDLSHNNLSDS-QFRFVIP  147 (165)
Q Consensus        78 ~~~l~~L~~L~ls~N--~l~~~~p~~~~-~l~~L~~L~ls~n~l~------~~~~l~~L~~L~ls~N~l~~~-~p~~~~~  147 (165)
                      +.++++|++|+++++  .+++..+..+. .+++|++|++++|+++      .+..+++|+.|++++|.+++. ++..+..
T Consensus       432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  511 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK  511 (592)
T ss_dssp             HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred             HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence            444566666666532  24433333332 3677788888877776      245677888888888887543 3444556


Q ss_pred             CCCCcEEEccCCccC
Q 038525          148 YLRLSVQCVWTCHST  162 (165)
Q Consensus       148 l~~L~~L~l~~n~~~  162 (165)
                      +++|++|++++|+.+
T Consensus       512 l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          512 LPSLRYLWVQGYRAS  526 (592)
T ss_dssp             CSSCCEEEEESCBCC
T ss_pred             cCccCeeECcCCcCC
Confidence            788888888888753

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.66  E-value=7.2e-09  Score=84.12  Aligned_cols=20  Identities=0%  Similarity=-0.321  Sum_probs=9.6

Q ss_pred             ccccccCCCCCcEEEccCCc
Q 038525          141 QFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       141 ~p~~~~~l~~L~~L~l~~n~  160 (165)
                      +|..+..+++|++|++++|.
T Consensus       285 l~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          285 MPILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             GGGGGGGGGGCCEEEETTCC
T ss_pred             HHHHHhhcCCCcEEecCCCc
Confidence            34444444455555555444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.61  E-value=2.1e-08  Score=74.46  Aligned_cols=75  Identities=21%  Similarity=0.240  Sum_probs=60.1

Q ss_pred             hccccCeeEEEeecCCCCc--ccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCC--CCCEEEcCCCCCC---------
Q 038525           53 RSLQLGWYHIELVECSIKG--ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLL--KLKYLNLRWKNLT---------  119 (165)
Q Consensus        53 ~~l~~~L~~L~ls~n~l~~--~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~--~L~~L~ls~n~l~---------  119 (165)
                      ..++ +|++|+|++|.+++  .+ |..+..+++|+.|+|++|++++.  ..+..+.  +|+.|++++|.+.         
T Consensus       167 ~~l~-~L~~L~Ls~N~l~~l~~l-~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y  242 (267)
T 3rw6_A          167 ENIP-ELLSLNLSNNRLYRLDDM-SSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTY  242 (267)
T ss_dssp             HHCT-TCCEEECTTSCCCCCGGG-TTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred             hhCC-CCCEEECCCCCCCCCccc-hhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhH
Confidence            3456 78999999999997  44 56677899999999999999954  3344444  9999999999987         


Q ss_pred             ---CCccCcCCCEEe
Q 038525          120 ---EIGKILLLQNLD  131 (165)
Q Consensus       120 ---~~~~l~~L~~L~  131 (165)
                         .+..+++|+.||
T Consensus       243 ~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          243 ISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHCTTCCEES
T ss_pred             HHHHHHHCcccCeEC
Confidence               156788898886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.52  E-value=8.4e-09  Score=83.68  Aligned_cols=83  Identities=13%  Similarity=0.191  Sum_probs=55.5

Q ss_pred             cCCCCCCcEEEcccCcCCCCCCcCcCC-CCCCCEEEcCCCCCC-----CC-ccCcCCCEEeccCCCCCCcccc-cccCCC
Q 038525           78 FSCFSNLQYINLWNNDLSGSIPPQIGS-LLKLKYLNLRWKNLT-----EI-GKILLLQNLDLSHNNLSDSQFR-FVIPYL  149 (165)
Q Consensus        78 ~~~l~~L~~L~ls~N~l~~~~p~~~~~-l~~L~~L~ls~n~l~-----~~-~~l~~L~~L~ls~N~l~~~~p~-~~~~l~  149 (165)
                      +..+++|+.|++++ .+++..+..+.. +++|+.|++++|.++     .+ ..+++|+.|++++|.+++..+. ....++
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence            44556677777755 444333333443 677888888888876     22 5678888888888888543333 445578


Q ss_pred             CCcEEEccCCcc
Q 038525          150 RLSVQCVWTCHS  161 (165)
Q Consensus       150 ~L~~L~l~~n~~  161 (165)
                      +|+.|++++|+.
T Consensus       507 ~L~~L~l~~~~~  518 (594)
T 2p1m_B          507 TMRSLWMSSCSV  518 (594)
T ss_dssp             GSSEEEEESSCC
T ss_pred             CCCEEeeeCCCC
Confidence            888888888875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.47  E-value=1.3e-06  Score=68.35  Aligned_cols=106  Identities=14%  Similarity=0.174  Sum_probs=62.9

Q ss_pred             chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCC-----CCCCcCcCCCCCCCEEEcCCCCCC---
Q 038525           48 SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLS-----GSIPPQIGSLLKLKYLNLRWKNLT---  119 (165)
Q Consensus        48 ~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~-----~~~p~~~~~l~~L~~L~ls~n~l~---  119 (165)
                      +...|.. . +|+.+.+. +.+. .+++..|.++++|+.+++.+|.+.     ...+..|.++.+|+.+++.. .++   
T Consensus       241 ~~~aF~~-~-~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~  315 (401)
T 4fdw_A          241 GQEAFRE-S-GITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG  315 (401)
T ss_dssp             CTTTTTT-C-CCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC
T ss_pred             ccccccc-C-CccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh
Confidence            3344444 2 45566663 3344 222666777777777777766553     23345666777777777763 344   


Q ss_pred             --CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525          120 --EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       120 --~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                        .|.++++|+.+.+..| ++..-+..|.++ +|+.+.+++|.
T Consensus       316 ~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          316 QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             TTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred             hhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence              6667777777777544 543445566666 77777776664

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.43  E-value=4.2e-08  Score=79.57  Aligned_cols=101  Identities=14%  Similarity=0.136  Sum_probs=54.6

Q ss_pred             CeeEEEeecC-CCCcc-cCCcccCCCCCCcEEEcccCcCCCCCCcCcC----CCCCCCEEEcCCCC--CC------CCcc
Q 038525           58 GWYHIELVEC-SIKGE-LGSLNFSCFSNLQYINLWNNDLSGSIPPQIG----SLLKLKYLNLRWKN--LT------EIGK  123 (165)
Q Consensus        58 ~L~~L~ls~n-~l~~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~----~l~~L~~L~ls~n~--l~------~~~~  123 (165)
                      +|++|++++| .+... + +..+..+++|++|++++|.+++..+..+.    .+++|+.|++++|.  ++      .+..
T Consensus       131 ~L~~L~L~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~  209 (594)
T 2p1m_B          131 NFKVLVLSSCEGFSTDGL-AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR  209 (594)
T ss_dssp             TCCEEEEESCEEEEHHHH-HHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred             CCcEEeCCCcCCCCHHHH-HHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence            5666666666 33321 2 33333566677777776666544333322    45567777776665  32      1234


Q ss_pred             CcCCCEEeccCCCCCCcccccccCCCCCcEEEccCC
Q 038525          124 ILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTC  159 (165)
Q Consensus       124 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n  159 (165)
                      +++|++|++++|...+.+|..+..+++|+.|+++.+
T Consensus       210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred             CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence            566777777666222235555666666666665433

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.39  E-value=1.3e-07  Score=66.27  Aligned_cols=87  Identities=13%  Similarity=0.004  Sum_probs=69.4

Q ss_pred             CcccCCCCCCcEEEcccC-cCCCC----CCcCcCCCCCCCEEEcCCCCCC---------CCccCcCCCEEeccCCCCCCc
Q 038525           75 SLNFSCFSNLQYINLWNN-DLSGS----IPPQIGSLLKLKYLNLRWKNLT---------EIGKILLLQNLDLSHNNLSDS  140 (165)
Q Consensus        75 p~~~~~l~~L~~L~ls~N-~l~~~----~p~~~~~l~~L~~L~ls~n~l~---------~~~~l~~L~~L~ls~N~l~~~  140 (165)
                      ...+...+.|++|++++| .+...    +...+...++|++|++++|.+.         .+...+.|++|+|++|.+...
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            345667899999999999 88732    2344566789999999999998         345568899999999999743


Q ss_pred             ----ccccccCCCCCcEEEc--cCCcc
Q 038525          141 ----QFRFVIPYLRLSVQCV--WTCHS  161 (165)
Q Consensus       141 ----~p~~~~~l~~L~~L~l--~~n~~  161 (165)
                          +.+.+...++|++|++  ++|+.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i  135 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPL  135 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCC
Confidence                4567788899999999  77875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.38  E-value=2.3e-07  Score=64.64  Aligned_cols=78  Identities=13%  Similarity=0.059  Sum_probs=44.3

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCc-CCCCCCcCcCCC----CCCCEEEcCCCC-CC-----CCccCcC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNND-LSGSIPPQIGSL----LKLKYLNLRWKN-LT-----EIGKILL  126 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~-l~~~~p~~~~~l----~~L~~L~ls~n~-l~-----~~~~l~~  126 (165)
                      .|++||++++.++..- -..+.++++|+.|+|+++. ++..--..+..+    ++|+.|++++|. ++     .+..+++
T Consensus        62 ~L~~LDLs~~~Itd~G-L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIG-FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGG-GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHH-HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            4667777777665332 3345666777777777663 442222223332    246666666653 55     4555666


Q ss_pred             CCEEeccCCC
Q 038525          127 LQNLDLSHNN  136 (165)
Q Consensus       127 L~~L~ls~N~  136 (165)
                      |+.|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            6666666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.31  E-value=3.8e-06  Score=65.75  Aligned_cols=111  Identities=8%  Similarity=0.025  Sum_probs=89.9

Q ss_pred             CCchhhhhccccCeeEEEeecCCCC----cccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC--
Q 038525           46 QDSSQCFRSLQLGWYHIELVECSIK----GELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT--  119 (165)
Q Consensus        46 ~~~~~~~~~l~~~L~~L~ls~n~l~----~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~--  119 (165)
                      .++...|...+ +|+.+++.+|.+.    ..+++..|.++++|+.+++.+ .++..-...|.++.+|+.+.+..| ++  
T Consensus       261 ~I~~~aF~~c~-~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I  337 (401)
T 4fdw_A          261 NIASRAFYYCP-ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI  337 (401)
T ss_dssp             EECTTTTTTCT-TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred             EEChhHhhCCC-CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence            35677788888 8999999998764    123378899999999999994 577455678999999999999766 44  


Q ss_pred             ---CCccCcCCCEEeccCCCCCCcccccccCCC-CCcEEEccCCc
Q 038525          120 ---EIGKILLLQNLDLSHNNLSDSQFRFVIPYL-RLSVQCVWTCH  160 (165)
Q Consensus       120 ---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~-~L~~L~l~~n~  160 (165)
                         +|.++ +|+.+++++|.+....+..|.+++ .++.+++-.+.
T Consensus       338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence               78899 999999999998866667788885 78899887664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.30  E-value=2.4e-07  Score=71.71  Aligned_cols=103  Identities=17%  Similarity=0.175  Sum_probs=63.2

Q ss_pred             CeeEEEeecCCCCcccCCcccC--CCCCCcEEEccc--CcCCCC-----CCcCc--CCCCCCCEEEcCCCCCC-------
Q 038525           58 GWYHIELVECSIKGELGSLNFS--CFSNLQYINLWN--NDLSGS-----IPPQI--GSLLKLKYLNLRWKNLT-------  119 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~--~l~~L~~L~ls~--N~l~~~-----~p~~~--~~l~~L~~L~ls~n~l~-------  119 (165)
                      +|++|++..+.+.... ...+.  .+++|+.|+|+.  |...+.     +...+  ..+++|++|++++|.+.       
T Consensus       194 ~L~~L~L~~~~l~~~~-l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l  272 (362)
T 2ra8_A          194 NLKSLEIISGGLPDSV-VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF  272 (362)
T ss_dssp             TCSEEEEECSBCCHHH-HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred             CCcEEEEecCCCChHH-HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence            4555555555443221 11222  577888888753  221111     11122  24688899999888876       


Q ss_pred             -CCccCcCCCEEeccCCCCCCc----ccccccCCCCCcEEEccCCcc
Q 038525          120 -EIGKILLLQNLDLSHNNLSDS----QFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       120 -~~~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~l~~n~~  161 (165)
                       ....+++|++|+|+.|.+.+.    ++..+.++++|+.|++++|..
T Consensus       273 a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence             224578899999999988653    344455678899999998875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.19  E-value=5.9e-07  Score=62.59  Aligned_cols=87  Identities=7%  Similarity=0.008  Sum_probs=66.8

Q ss_pred             CcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCC-CC-----CCccC----cCCCEEeccCCC-CCCcccc
Q 038525           75 SLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKN-LT-----EIGKI----LLLQNLDLSHNN-LSDSQFR  143 (165)
Q Consensus        75 p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~-l~-----~~~~l----~~L~~L~ls~N~-l~~~~p~  143 (165)
                      |.....-..|+.||++++.++..--..+..+++|+.|+++++. ++     .+..+    ++|++|+++++. ++..--.
T Consensus        54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            4433334579999999999875544567889999999999995 77     44443    479999999985 7643334


Q ss_pred             cccCCCCCcEEEccCCcc
Q 038525          144 FVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       144 ~~~~l~~L~~L~l~~n~~  161 (165)
                      .+.++++|+.|++++|..
T Consensus       134 ~L~~~~~L~~L~L~~c~~  151 (176)
T 3e4g_A          134 ALHHFRNLKYLFLSDLPG  151 (176)
T ss_dssp             HGGGCTTCCEEEEESCTT
T ss_pred             HHhcCCCCCEEECCCCCC
Confidence            577899999999999864

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.95  E-value=3.9e-06  Score=64.86  Aligned_cols=106  Identities=11%  Similarity=0.095  Sum_probs=70.1

Q ss_pred             hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcC--CCCCCCEEEcCC--CC------CC-
Q 038525           51 CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIG--SLLKLKYLNLRW--KN------LT-  119 (165)
Q Consensus        51 ~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~--~l~~L~~L~ls~--n~------l~-  119 (165)
                      .+...| +|++|++++|.-. .+ +. +. +++|+.|++..+.++......+.  .+++|+.|+|+.  |.      +. 
T Consensus       167 ll~~~P-~L~~L~L~g~~~l-~l-~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          167 VLDAMP-LLNNLKIKGTNNL-SI-GK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             HHHTCT-TCCEEEEECCBTC-BC-CS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             HHhcCC-CCcEEEEeCCCCc-ee-cc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            345556 7889999887322 33 33 33 78899999988877633223333  688999998853  21      11 


Q ss_pred             -----CCccCcCCCEEeccCCCCCCccccccc---CCCCCcEEEccCCcc
Q 038525          120 -----EIGKILLLQNLDLSHNNLSDSQFRFVI---PYLRLSVQCVWTCHS  161 (165)
Q Consensus       120 -----~~~~l~~L~~L~ls~N~l~~~~p~~~~---~l~~L~~L~l~~n~~  161 (165)
                           ....+++|+.|++.+|.+....+..+.   .+++|++|+++.|+.
T Consensus       242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence                 113578999999999888643333332   477899999998874

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.84  E-value=0.00013  Score=56.60  Aligned_cols=105  Identities=10%  Similarity=0.054  Sum_probs=73.3

Q ss_pred             hhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccC
Q 038525           50 QCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKI  124 (165)
Q Consensus        50 ~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l  124 (165)
                      ..|.... .|+.+.+..+... .- ...|.+++.|+.+.+.. .++..-...|.++.+|+.+++..+ ++     +|.++
T Consensus       259 ~aF~~c~-~L~~i~lp~~~~~-I~-~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C  333 (394)
T 4gt6_A          259 HAFDSCA-YLASVKMPDSVVS-IG-TGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC  333 (394)
T ss_dssp             TTTTTCS-SCCEEECCTTCCE-EC-TTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             ceeeecc-cccEEecccccce-ec-CcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence            3455555 6777777665432 33 66778888888888863 455344456778888888888765 33     78888


Q ss_pred             cCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525          125 LLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       125 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      .+|+.+.+..+ ++..-...|.++.+|+.+.+.++.
T Consensus       334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            88888888654 554445678888888888887764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.76  E-value=9.3e-05  Score=57.34  Aligned_cols=103  Identities=13%  Similarity=0.070  Sum_probs=62.7

Q ss_pred             hhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCcc
Q 038525           49 SQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGK  123 (165)
Q Consensus        49 ~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~  123 (165)
                      ...|.... .++.+....+.+.    ...|..+.+|+.+.+..+ ++..-...|..+.+|+.+++..+ ++     +|.+
T Consensus       269 ~~~F~~~~-~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~  341 (394)
T 4fs7_A          269 GSLFYNCS-GLKKVIYGSVIVP----EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRG  341 (394)
T ss_dssp             SCTTTTCT-TCCEEEECSSEEC----TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTT
T ss_pred             cccccccc-ccceeccCceeec----cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccC
Confidence            33455444 5555555544322    445667777777777654 44234456677777777777644 33     6777


Q ss_pred             CcCCCEEeccCCCCCCcccccccCCCCCcEEEccCC
Q 038525          124 ILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTC  159 (165)
Q Consensus       124 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n  159 (165)
                      +++|+.+++..+ ++..-..+|.++.+|+.+.+..+
T Consensus       342 c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          342 CTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             CCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            777777777665 55344456777777777777544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.69  E-value=0.00012  Score=48.30  Aligned_cols=56  Identities=16%  Similarity=0.183  Sum_probs=42.9

Q ss_pred             EEEeecCCCC-cccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC
Q 038525           61 HIELVECSIK-GELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT  119 (165)
Q Consensus        61 ~L~ls~n~l~-~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~  119 (165)
                      +++.+++.++ ..+ |..+.  ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~v-P~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASL-PTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTS-CSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccC-CCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            6778888876 345 54433  46899999999998555566788899999999999886

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.62  E-value=0.00025  Score=54.44  Aligned_cols=96  Identities=11%  Similarity=0.023  Sum_probs=49.8

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL  132 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l  132 (165)
                      .|+.+.+..+ ++..- ...|.++..|+.+.+..+ ++..-...|..+.+|+.+.+.++.++     .|.++.+|+.+.+
T Consensus       241 ~L~~i~lp~~-v~~I~-~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          241 ALDEIAIPKN-VTSIG-SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             SCCEEEECTT-CCEEC-TTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             cceEEEcCCC-ccEeC-ccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence            4555555544 33122 445555566666655433 33122334555666666666655554     5566666666666


Q ss_pred             cCCCCCCcccccccCCCCCcEEEcc
Q 038525          133 SHNNLSDSQFRFVIPYLRLSVQCVW  157 (165)
Q Consensus       133 s~N~l~~~~p~~~~~l~~L~~L~l~  157 (165)
                      ..+ ++..-..+|.++.+|+.+.+.
T Consensus       318 p~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          318 PTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             Ccc-ccEEHHHHhhCCCCCCEEEEC
Confidence            543 432333456666666655553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.55  E-value=0.0003  Score=54.48  Aligned_cols=99  Identities=14%  Similarity=0.149  Sum_probs=48.7

Q ss_pred             chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCc
Q 038525           48 SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIG  122 (165)
Q Consensus        48 ~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~  122 (165)
                      +...|.... +|+.+.+..+ +. .++...|.++++|+.+++..+ ++..-...|.++.+|+.+++..+ ++     +|.
T Consensus       289 ~~~~F~~~~-~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~  363 (394)
T 4fs7_A          289 PEKTFYGCS-SLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ  363 (394)
T ss_dssp             CTTTTTTCT-TCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred             ccccccccc-cccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence            333444444 4555555443 33 222445555666666665433 33233345555566666665544 32     555


Q ss_pred             cCcCCCEEeccCCCCCCcccccccCCCCCcE
Q 038525          123 KILLLQNLDLSHNNLSDSQFRFVIPYLRLSV  153 (165)
Q Consensus       123 ~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~  153 (165)
                      ++++|+.+++..+ ++ .+...|.++++|+.
T Consensus       364 ~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          364 GCINLKKVELPKR-LE-QYRYDFEDTTKFKW  392 (394)
T ss_dssp             TCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred             CCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence            5666666655443 22 23344555555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.52  E-value=3.6e-05  Score=54.49  Aligned_cols=102  Identities=13%  Similarity=0.044  Sum_probs=73.7

Q ss_pred             CeeEEEeecC-CCCc----ccCCcccCCCCCCcEEEcccCcCCCCCC----cCcCCCCCCCEEEcCCCCCC---------
Q 038525           58 GWYHIELVEC-SIKG----ELGSLNFSCFSNLQYINLWNNDLSGSIP----PQIGSLLKLKYLNLRWKNLT---------  119 (165)
Q Consensus        58 ~L~~L~ls~n-~l~~----~~~p~~~~~l~~L~~L~ls~N~l~~~~p----~~~~~l~~L~~L~ls~n~l~---------  119 (165)
                      .|++|++++| .+..    .+ ...+..-+.|+.|+|++|.+...--    ..+..-+.|+.|+|++|.|+         
T Consensus        42 ~L~~L~L~~nn~igd~ga~~l-a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHH-HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            6889999986 7652    13 3445667889999999999973222    23345578999999999998         


Q ss_pred             CCccCcCCCEEeccCC---CCCC----cccccccCCCCCcEEEccCCc
Q 038525          120 EIGKILLLQNLDLSHN---NLSD----SQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       120 ~~~~l~~L~~L~ls~N---~l~~----~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      .+..-+.|+.|+|++|   .+..    .+.+.+..-+.|+.|+++.|.
T Consensus       121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            4556677999999865   3331    234566777899999998764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.34  E-value=0.00033  Score=54.26  Aligned_cols=107  Identities=15%  Similarity=0.133  Sum_probs=74.9

Q ss_pred             CchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CC
Q 038525           47 DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EI  121 (165)
Q Consensus        47 ~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~  121 (165)
                      +....|.... .|+.+.+. +.+. .++...|.++.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++     +|
T Consensus       279 I~~~aF~~c~-~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF  353 (394)
T 4gt6_A          279 IGTGAFMNCP-ALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAF  353 (394)
T ss_dssp             ECTTTTTTCT-TCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGG
T ss_pred             ecCccccccc-ccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHh
Confidence            3455677777 78899986 4455 343778999999999999865 55355668999999999999765 43     89


Q ss_pred             ccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          122 GKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       122 ~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      .++++|+.+++.++...   -..+....+|+.+.+..+..
T Consensus       354 ~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          354 SNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             hCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            99999999999987643   24677788999998877654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.26  E-value=0.00037  Score=45.85  Aligned_cols=41  Identities=10%  Similarity=0.045  Sum_probs=34.5

Q ss_pred             ccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCC
Q 038525           54 SLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLS   95 (165)
Q Consensus        54 ~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~   95 (165)
                      .++.++++|+|++|+++... +..|..+++|++|+|++|.+.
T Consensus        28 ~lp~~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           28 AFPVDTTELVLTGNNLTALP-PGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             CCCTTCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCcCCCEEECCCCcCCccC-hhhhhhccccCEEEecCCCee
Confidence            34546779999999999544 788899999999999999875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.12  E-value=0.0002  Score=50.60  Aligned_cols=83  Identities=13%  Similarity=0.035  Sum_probs=62.3

Q ss_pred             cCCCCCCcEEEcccC-cCCCC----CCcCcCCCCCCCEEEcCCCCCC---------CCccCcCCCEEeccCCCCCCc---
Q 038525           78 FSCFSNLQYINLWNN-DLSGS----IPPQIGSLLKLKYLNLRWKNLT---------EIGKILLLQNLDLSHNNLSDS---  140 (165)
Q Consensus        78 ~~~l~~L~~L~ls~N-~l~~~----~p~~~~~l~~L~~L~ls~n~l~---------~~~~l~~L~~L~ls~N~l~~~---  140 (165)
                      +..-+.|+.|+|++| .|...    +-..+..-..|+.|+|++|.+.         .+..-+.|+.|+|+.|.|...   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            345578999999986 77521    2234556788999999999998         344557899999999999632   


Q ss_pred             -ccccccCCCCCcEEEccCCc
Q 038525          141 -QFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       141 -~p~~~~~l~~L~~L~l~~n~  160 (165)
                       +-+.+..-+.|+.|++++|.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~  137 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQR  137 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHhhCCceeEEECCCCc
Confidence             23456677789999998764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.10  E-value=0.0032  Score=48.20  Aligned_cols=99  Identities=16%  Similarity=0.070  Sum_probs=75.1

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcCCCEEecc
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLS  133 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls  133 (165)
                      .++.+.+..+ +...- ...|.++..|+.+.+..+ ++..-...|..+..|+.+.+..+--+    .|.++++|+.+.+.
T Consensus       218 ~l~~i~~~~~-~~~i~-~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~  294 (379)
T 4h09_A          218 NLKKITITSG-VTTLG-DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMD  294 (379)
T ss_dssp             SCSEEECCTT-CCEEC-TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEEC
T ss_pred             ccceeeeccc-eeEEc-cccccCCccceEEEcCCC-ccEeCccccceeehhccccccccceecccccccccccccccccc
Confidence            4556666554 33233 667888899999999776 55345567888999999998765222    78899999999999


Q ss_pred             CCCCCCcccccccCCCCCcEEEccCC
Q 038525          134 HNNLSDSQFRFVIPYLRLSVQCVWTC  159 (165)
Q Consensus       134 ~N~l~~~~p~~~~~l~~L~~L~l~~n  159 (165)
                      ++.++..-...|.++.+|+.+.+.++
T Consensus       295 ~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          295 NSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             CTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             ccccceehhhhhcCCCCCCEEEcCcc
Confidence            99888555678999999999999654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	165
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.4 bits (98), Expect = 8e-06
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDL 132
                 NL  ++L NN + G++P  +  L  L  LN+ + NL     + G +        
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298

Query: 133 SHNNL 137
           ++N  
Sbjct: 299 ANNKC 303

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-05
 Identities = 13/103 (12%), Positives = 33/103 (32%), Gaps = 5/103 (4%)

Query: 36  SFTQQRLVEGQDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLS 95
             T    +E  ++     S      ++  +             S  + LQ +   NN +S
Sbjct: 283 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVS 342

Query: 96  GSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSHN 135
                 + +L  + +L+     ++    +  +  +  L L+  
Sbjct: 343 D--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 5e-05
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLS 133
             S   NL Y+ L+ N++S   P  + SL KL+ L      ++    +  +  +  L   
Sbjct: 302 PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAG 359

Query: 134 HNNLSD 139
           HN +SD
Sbjct: 360 HNQISD 365

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.5 bits (88), Expect = 1e-04
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 1/101 (0%)

Query: 65  VECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKI 124
           V+CS  G L  +      +   ++L NN ++        +L  L  L L    +++I   
Sbjct: 15  VQCSDLG-LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG 73

Query: 125 LLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHSTIWK 165
                + L    LS +Q + +   +  ++Q +    + I K
Sbjct: 74  AFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITK 114

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 2e-04
 Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 1/100 (1%)

Query: 65  VECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKI 124
           V C  +  L +L      +   ++L  N L       +    +L  LNL    LT++   
Sbjct: 15  VNCDKRN-LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73

Query: 125 LLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHSTIW 164
             L  L     + +  Q   ++     ++  +    + + 
Sbjct: 74  GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 3e-04
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 77  NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILL-LQNLDLSHN 135
                 +L+ +N+ NN L   +P     L   + L   + +L E+ ++   L+ L + +N
Sbjct: 279 LCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLAEVPELPQNLKQLHVEYN 334

Query: 136 NLSD 139
            L +
Sbjct: 335 PLRE 338

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.001
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 83  NLQYINLWNNDLSGSIPPQIGSLLK-LKYLNLRWKNLTEIGKILL---------LQNLDL 132
           ++Q +++   +LS +   ++  LL+  + + L    LTE     +         L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 133 SHNNLSDSQFRFVIPYLR 150
             N L D     V+  L+
Sbjct: 63  RSNELGDVGVHCVLQGLQ 80

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (77), Expect = 0.004
 Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 14/104 (13%)

Query: 50  QCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLK-- 107
              R L         +E +   EL        S L+ + L + D+S S    + + L   
Sbjct: 337 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 396

Query: 108 --LKYLNLRWKNLTEIGKILL----------LQNLDLSHNNLSD 139
             L+ L+L    L + G + L          L+ L L     S+
Sbjct: 397 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 18/103 (17%), Positives = 42/103 (40%), Gaps = 8/103 (7%)

Query: 68  SIKGELGSLNFSCFSNLQYINLWNNDLSGSIPP------QIGSLLKLKYLNLRWKNLTEI 121
           +IK  +    F    ++        +L G IPP       + +L   K+L L   N+ +I
Sbjct: 6   TIKDAIR--IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI 63

Query: 122 GKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHSTIW 164
             +  ++NL +     +  +    +  +  +++ +W  ++ I 
Sbjct: 64  SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	165
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.81
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.73
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.65
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.64
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.64
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.64
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.63
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.62
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.61
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.6
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.54
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.5
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.48
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.46
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.44
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.42
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.32
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.32
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.31
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.29
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.18
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.09
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.86
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.84
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.73
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.57
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.55
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.37
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.3
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.28
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.24
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.74
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.58
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.75

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=2.2e-19  Score=125.97  Aligned_cols=105  Identities=16%  Similarity=0.073  Sum_probs=96.2

Q ss_pred             cCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEe
Q 038525           57 LGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLD  131 (165)
Q Consensus        57 ~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~  131 (165)
                      .++++|++++|++++.+++..|.++++|+.|++++|.+.+..+..|..+++|++|++++|+++     .|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            367799999999986554778899999999999999999888899999999999999999998     689999999999


Q ss_pred             ccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          132 LSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       132 ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      |++|+|++..|+.|..+++|+++++++|..
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cCCccccccCHHHhcCCccccccccccccc
Confidence            999999987788899999999999999975

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=1.1e-17  Score=109.62  Aligned_cols=99  Identities=20%  Similarity=0.251  Sum_probs=75.7

Q ss_pred             eEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccCCC
Q 038525           60 YHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSHNN  136 (165)
Q Consensus        60 ~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~N~  136 (165)
                      |+|++++|+++ .+ + .+..+++|++|++++|.++ .+|+.++.+++|++|++++|.++   .++.+++|+++++++|+
T Consensus         1 R~L~Ls~n~l~-~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLT-VL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCS-SC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCC-CC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccCccccccccCeEECCCCc
Confidence            46888888887 44 4 4778888888888888887 67777888888888888888887   67777888888888888


Q ss_pred             CCCcc-cccccCCCCCcEEEccCCccC
Q 038525          137 LSDSQ-FRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       137 l~~~~-p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      +++.. ...+..+++|+++++++|+..
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            87432 246777888888888888753

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8.9e-16  Score=113.08  Aligned_cols=110  Identities=21%  Similarity=0.155  Sum_probs=73.0

Q ss_pred             hhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCcc
Q 038525           49 SQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGK  123 (165)
Q Consensus        49 ~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~  123 (165)
                      ...+.... +|+.+++++|.+++.. +..|..+++|+.|++++|++++..+..|..+++|+++++++|+++     .|..
T Consensus       122 ~~~~~~~~-~L~~l~l~~N~l~~i~-~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~  199 (284)
T d1ozna_         122 PGLFRGLA-ALQYLYLQDNALQALP-DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD  199 (284)
T ss_dssp             TTTTTTCT-TCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             ccccchhc-ccchhhhccccccccC-hhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhh
Confidence            33344444 5666777777766443 556666667777777777776555666666777777777777665     5666


Q ss_pred             CcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525          124 ILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       124 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      +++|++|++++|.+.+..|..|..+.+|++|++++|+
T Consensus       200 l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             hhhcccccccccccccccccccccccccCEEEecCCC
Confidence            6777777777777776666667777777777777765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.64  E-value=1.3e-16  Score=118.96  Aligned_cols=133  Identities=18%  Similarity=0.179  Sum_probs=83.1

Q ss_pred             cccCCCcccccccccccc-----CCCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcC
Q 038525           27 VAASENRKTSFTQQRLVE-----GQDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQ  101 (165)
Q Consensus        27 ~~~~~~~l~~l~~~~~~~-----~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~  101 (165)
                      ++.+..+++.|+.+++..     +.+|+. +..++ +|++|++++|++.+.. +..+..+..|+++++++|.+.+.+|..
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~-~L~~L~Ls~N~l~~~~-~~~~~~~~~L~~l~l~~N~~~~~~p~~  144 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLT-QLHYLYITHTNVSGAI-PDFLSQIKTLVTLDFSYNALSGTLPPS  144 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCT-TCSEEEEEEECCEEEC-CGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             CChHHhcCccccccccccccccccccccc-ccccc-ccchhhhccccccccc-cccccchhhhcccccccccccccCchh
Confidence            445555666666555532     234433 45566 6667777666666544 444555555555555555444444444


Q ss_pred             cCCCCCCCEEEcCCCCCC--------------------------------------------------------------
Q 038525          102 IGSLLKLKYLNLRWKNLT--------------------------------------------------------------  119 (165)
Q Consensus       102 ~~~l~~L~~L~ls~n~l~--------------------------------------------------------------  119 (165)
                      ++.++.++.+++++|.++                                                              
T Consensus       145 l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~  224 (313)
T d1ogqa_         145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ  224 (313)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCS
T ss_pred             hccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            444444444444444331                                                              


Q ss_pred             --------------CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          120 --------------EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       120 --------------~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                                    .++.+++++.|++++|+++|.+|+.+.++++|++|++++|+..
T Consensus       225 ~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             EEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             ccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence                          2344677899999999999999999999999999999999753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.6e-15  Score=109.75  Aligned_cols=100  Identities=19%  Similarity=0.092  Sum_probs=60.1

Q ss_pred             eeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEecc
Q 038525           59 WYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLS  133 (165)
Q Consensus        59 L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls  133 (165)
                      |++|++++|.+.+.. +..+..+.++++|++++|.+++..+..+..+++++.+++++|+++     .+..+++|++|+|+
T Consensus       102 L~~L~l~~~~~~~~~-~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls  180 (266)
T d1p9ag_         102 LTVLDVSFNRLTSLP-LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (266)
T ss_dssp             CCEEECCSSCCCCCC-SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccccccccccceee-ccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecc
Confidence            334444444333222 333444444444555555555334444555666777777777666     46667777778887


Q ss_pred             CCCCCCcccccccCCCCCcEEEccCCc
Q 038525          134 HNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       134 ~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      +|+++ .+|+.+..+++|+.|++++|.
T Consensus       181 ~N~L~-~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         181 ENSLY-TIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             SSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             cCCCc-ccChhHCCCCCCCEEEecCCC
Confidence            77777 677777777777778777775

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.2e-15  Score=110.12  Aligned_cols=110  Identities=19%  Similarity=0.191  Sum_probs=79.3

Q ss_pred             chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC--------
Q 038525           48 SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT--------  119 (165)
Q Consensus        48 ~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~--------  119 (165)
                      +...|..++ +|++|++++|+++ .+ | .++.+++|++|++++|+++ ..+..+..+++|++|++++|.+.        
T Consensus        47 ~~~~f~~l~-~L~~L~L~~N~l~-~l-~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  121 (266)
T d1p9ag_          47 SLATLMPYT-RLTQLNLDRAELT-KL-Q-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR  121 (266)
T ss_dssp             EGGGGTTCT-TCCEEECTTSCCC-EE-E-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTT
T ss_pred             CHHHhhccc-ccccccccccccc-cc-c-ccccccccccccccccccc-ccccccccccccccccccccccceeeccccc
Confidence            455566666 7777777777776 44 3 3466777777777777776 44556666666666666666543        


Q ss_pred             ---------------------CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          120 ---------------------EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       120 ---------------------~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                                           .+..++.++.+++++|++++..++.|..+++|++|++++|+..
T Consensus       122 ~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc
Confidence                                 3456778899999999998777778888999999999999753

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.63  E-value=2e-16  Score=118.02  Aligned_cols=102  Identities=23%  Similarity=0.306  Sum_probs=64.8

Q ss_pred             CeeEEEeecCCCCc--ccCCcccCCCCCCcEEEccc-CcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCE
Q 038525           58 GWYHIELVECSIKG--ELGSLNFSCFSNLQYINLWN-NDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQN  129 (165)
Q Consensus        58 ~L~~L~ls~n~l~~--~~~p~~~~~l~~L~~L~ls~-N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~  129 (165)
                      ++++|++++|.+.|  .+ |..++.+++|++|++++ |.++|.+|++|+.+++|++|++++|++.     .+..+..|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~l-p~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPI-PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEEC-CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCC-ChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            35566666666665  34 56666666666666664 5666666666666666666666666665     3555566666


Q ss_pred             EeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525          130 LDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       130 L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      +++++|.+.+.+|..+.+++.|+.+++++|+
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccccccccccCchhhccCcccceeeccccc
Confidence            6666666666666666666666666666664

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=9.6e-16  Score=104.58  Aligned_cols=99  Identities=15%  Similarity=0.121  Sum_probs=65.4

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL  132 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l  132 (165)
                      ++++|++++|+++ .+ +..+..+++|+.|++++|.++ .++ .+..+++|++|++++|+++     .+..+++|+.|++
T Consensus        19 ~lr~L~L~~n~I~-~i-~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          19 RDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             SCEEEECTTSCCC-SC-CCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcEEECCCCCCC-cc-CccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            5667777777776 45 555566777777777777776 443 3666777777777777776     1345677777777


Q ss_pred             cCCCCCCccc--ccccCCCCCcEEEccCCcc
Q 038525          133 SHNNLSDSQF--RFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       133 s~N~l~~~~p--~~~~~l~~L~~L~l~~n~~  161 (165)
                      ++|+++. ++  ..+..+++|+++++++|..
T Consensus        95 ~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          95 TNNSLVE-LGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             CSCCCCC-GGGGGGGGGCTTCCEEECCSSGG
T ss_pred             ccccccc-cccccccccccccchhhcCCCcc
Confidence            7777763 33  3566677777777777754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.2e-15  Score=109.41  Aligned_cols=115  Identities=18%  Similarity=0.180  Sum_probs=102.3

Q ss_pred             CCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----C
Q 038525           46 QDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----E  120 (165)
Q Consensus        46 ~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~  120 (165)
                      .+++..|..++ +|++|++++|.+.... +..+...++|+.+++++|.+++..+..|..+++|+.|++++|+++     .
T Consensus        95 ~l~~~~~~~l~-~L~~L~l~~n~~~~~~-~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_          95 SVDPATFHGLG-RLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             CCCTTTTTTCT-TCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccchhhcccc-cCCEEecCCccccccc-ccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence            34566677788 8999999999998655 778889999999999999999666778889999999999999998     6


Q ss_pred             CccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          121 IGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       121 ~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      +.++++|+.+++++|++++..|..|.++++|++|++++|+..
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             hccccccchhhhhhccccccChhHhhhhhhcccccccccccc
Confidence            889999999999999999888999999999999999999864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=2.5e-15  Score=104.87  Aligned_cols=98  Identities=17%  Similarity=0.241  Sum_probs=87.1

Q ss_pred             EEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCC-CcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEeccC
Q 038525           61 HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSI-PPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSH  134 (165)
Q Consensus        61 ~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~-p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls~  134 (165)
                      +++.++++++ .+ |..+.  +++++|++++|+|++.+ +..|..+++|+.|++++|.+.     .+..+++|++|++++
T Consensus        12 ~v~Cs~~~L~-~i-P~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          12 TVDCTGRGLK-EI-PRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EEECTTSCCS-SC-CSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EEEEeCCCcC-cc-CCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            7899999999 77 76664  78999999999998644 567789999999999999987     788899999999999


Q ss_pred             CCCCCcccccccCCCCCcEEEccCCccC
Q 038525          135 NNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       135 N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      |++++..|+.|.++++|++|+|++|++.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~  115 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred             ccccccCHHHHhCCCcccccccCCcccc
Confidence            9999777888999999999999999863

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=3.2e-15  Score=97.60  Aligned_cols=98  Identities=20%  Similarity=0.215  Sum_probs=80.4

Q ss_pred             hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccCc
Q 038525           52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKIL  125 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l~  125 (165)
                      +..++ .+++|++++|.++ .+ |..++.+++|+.|++++|.++ .+| .+..+++|+.+++++|+++      .+..++
T Consensus        16 l~~l~-~L~~L~ls~N~l~-~l-p~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~   90 (124)
T d1dcea3          16 LEQLL-LVTHLDLSHNRLR-AL-PPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP   90 (124)
T ss_dssp             GGGGT-TCCEEECCSSCCC-CC-CGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT
T ss_pred             cccCC-CCCEEECCCCccC-cc-hhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCccCCCCCchhhcCCC
Confidence            45666 7889999999998 67 778999999999999999999 555 4899999999999999997      467789


Q ss_pred             CCCEEeccCCCCCCc---ccccccCCCCCcEE
Q 038525          126 LLQNLDLSHNNLSDS---QFRFVIPYLRLSVQ  154 (165)
Q Consensus       126 ~L~~L~ls~N~l~~~---~p~~~~~l~~L~~L  154 (165)
                      +|+.+++++|+++..   .......+++|+.+
T Consensus        91 ~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          91 RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            999999999999632   12234446777655

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.54  E-value=3.7e-14  Score=105.01  Aligned_cols=106  Identities=17%  Similarity=0.142  Sum_probs=85.8

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcCCCEEecc
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLS  133 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls  133 (165)
                      ++++|++++|...+.. +..|..++.+++|++++|.+++..+..+.++++|++|++++|+++    .+..+++|++|+++
T Consensus       172 ~L~~L~l~~n~~~~~~-~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls  250 (305)
T d1xkua_         172 SLTELHLDGNKITKVD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH  250 (305)
T ss_dssp             TCSEEECTTSCCCEEC-TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred             ccCEEECCCCcCCCCC-hhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECC
Confidence            6778999998888777 888888999999999999998777788888899999999999887    67788899999999


Q ss_pred             CCCCCCcccccc------cCCCCCcEEEccCCccCcc
Q 038525          134 HNNLSDSQFRFV------IPYLRLSVQCVWTCHSTIW  164 (165)
Q Consensus       134 ~N~l~~~~p~~~------~~l~~L~~L~l~~n~~~~~  164 (165)
                      +|+++..-...|      ....+|+.|++++|+...|
T Consensus       251 ~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~  287 (305)
T d1xkua_         251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW  287 (305)
T ss_dssp             SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             CCccCccChhhccCcchhcccCCCCEEECCCCcCccC
Confidence            999874332333      3466888999999876444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.9e-14  Score=94.61  Aligned_cols=97  Identities=16%  Similarity=0.057  Sum_probs=47.6

Q ss_pred             EEEeecCCCCcccCCcccCCCCCCcEEEcccC-cCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEeccC
Q 038525           61 HIELVECSIKGELGSLNFSCFSNLQYINLWNN-DLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSH  134 (165)
Q Consensus        61 ~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N-~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls~  134 (165)
                      .++.+++.+. .. |..+.++++|++|++++| .++...++.|.++++|+.|++++|+++     +|..+++|++|+|++
T Consensus        12 ~l~c~~~~~~-~~-p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          12 GLRCTRDGAL-DS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             CEECCSSCCC-TT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             eEEecCCCCc-cC-cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            3444555444 33 444555555555555433 354333344555555555555555554     345555555555555


Q ss_pred             CCCCCcccccccCCCCCcEEEccCCc
Q 038525          135 NNLSDSQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       135 N~l~~~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      |+++. +|.......+|+.|++++|.
T Consensus        90 N~l~~-l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          90 NALES-LSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             SCCSC-CCSTTTCSCCCCEEECCSSC
T ss_pred             CCCcc-cChhhhccccccccccCCCc
Confidence            55552 33322223345555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.48  E-value=5.1e-13  Score=93.41  Aligned_cols=102  Identities=18%  Similarity=0.221  Sum_probs=58.8

Q ss_pred             hccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCC---------------------cCcCCCCCCCEE
Q 038525           53 RSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIP---------------------PQIGSLLKLKYL  111 (165)
Q Consensus        53 ~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p---------------------~~~~~l~~L~~L  111 (165)
                      +.++ +|++|++++|++++.  + .++.+++|++|++++|.+. .++                     +.+..+++|+.+
T Consensus        59 ~~l~-nL~~L~Ls~N~l~~~--~-~l~~l~~L~~L~l~~n~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L  133 (199)
T d2omxa2          59 EYLN-NLTQINFSNNQLTDI--T-PLKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL  133 (199)
T ss_dssp             GGCT-TCCEEECCSSCCCCC--G-GGTTCTTCCEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             ccCC-CcCcCccccccccCc--c-cccCCcccccccccccccc-cccccccccccccccccccccccccccchhhhhHHh
Confidence            3344 455555555555532  2 1455555555555555544 222                     124455566666


Q ss_pred             EcCCCCCC---CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          112 NLRWKNLT---EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       112 ~ls~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      ++++|++.   .+..+++++.|++++|++++ ++ .+.++++|++|++++|+.
T Consensus       134 ~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         134 ELSSNTISDISALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKV  184 (199)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCC
T ss_pred             hhhhhhhcccccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCC
Confidence            66666555   45566677777777777764 33 367788888888888864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=5.9e-13  Score=93.86  Aligned_cols=102  Identities=20%  Similarity=0.272  Sum_probs=71.6

Q ss_pred             hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------------
Q 038525           52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------------  119 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------------  119 (165)
                      ++.++ +|++|++++|++++ + + .++.+++|++|++++|+++ .+| .+..+++|+.+++++|.+.            
T Consensus        64 l~~l~-~L~~L~L~~n~i~~-l-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~  137 (210)
T d1h6ta2          64 IQYLP-NVTKLFLNGNKLTD-I-K-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLE  137 (210)
T ss_dssp             GGGCT-TCCEEECCSSCCCC-C-G-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCC
T ss_pred             HhhCC-CCCEEeCCCccccC-c-c-ccccCcccccccccccccc-ccc-ccccccccccccccccccccccccccccccc
Confidence            45555 67777777777774 3 3 3567777777777777777 344 3666777777777766543            


Q ss_pred             -------------CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          120 -------------EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       120 -------------~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                                   .+..+++|+.+++++|++++ ++ .+.++++|+.|++++|+.
T Consensus       138 ~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCC
Confidence                         24456778888888888874 33 377888888999888875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=7.8e-14  Score=94.89  Aligned_cols=87  Identities=8%  Similarity=0.016  Sum_probs=75.9

Q ss_pred             ccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccCCCCCCcccccccCCCCCcE
Q 038525           77 NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSV  153 (165)
Q Consensus        77 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~  153 (165)
                      .|.+..++++|++++|+|+ .+|..+..+++|+.|++++|+++   .+..+++|++|++++|++++..+..+..+++|+.
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            4677889999999999999 66777788999999999999998   7888999999999999998554555678999999


Q ss_pred             EEccCCccCcc
Q 038525          154 QCVWTCHSTIW  164 (165)
Q Consensus       154 L~l~~n~~~~~  164 (165)
                      |++++|+...|
T Consensus        92 L~L~~N~i~~~  102 (162)
T d1a9na_          92 LILTNNSLVEL  102 (162)
T ss_dssp             EECCSCCCCCG
T ss_pred             ceecccccccc
Confidence            99999987544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=6.7e-13  Score=92.80  Aligned_cols=100  Identities=21%  Similarity=0.256  Sum_probs=76.7

Q ss_pred             ccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEE
Q 038525           54 SLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNL  130 (165)
Q Consensus        54 ~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L  130 (165)
                      .++ ++++|++++|.+. .+ + .+..+++|++|++++|++++ +++ ++.+++|+.|++++|.+.   .+.+++.|+.+
T Consensus        38 ~l~-~l~~L~l~~~~i~-~l-~-~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLD-QVTTLQADRLGIK-SI-D-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGL  111 (199)
T ss_dssp             HHT-TCCEEECTTSCCC-CC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             Hhc-CCCEEECCCCCCC-Cc-c-ccccCCCcCcCccccccccC-ccc-ccCCcccccccccccccccccccccccccccc
Confidence            345 6779999999998 44 3 47889999999999999995 443 889999999999999887   56667777777


Q ss_pred             eccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          131 DLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       131 ~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      ++++|.+...  +.+..+++|+.+++++|+.
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l  140 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTI  140 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCC
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhh
Confidence            7777766532  2456667777777776654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.44  E-value=4.8e-13  Score=98.93  Aligned_cols=106  Identities=15%  Similarity=0.212  Sum_probs=92.9

Q ss_pred             hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCc
Q 038525           51 CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKIL  125 (165)
Q Consensus        51 ~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~  125 (165)
                      .+..++ +++++++++|.+. .+ |..+  +++|+.|++++|..++..+..|..++.++.|++++|.++     .+.+++
T Consensus       145 ~~~~l~-~L~~l~l~~n~l~-~l-~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~  219 (305)
T d1xkua_         145 AFQGMK-KLSYIRIADTNIT-TI-PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP  219 (305)
T ss_dssp             GGGGCT-TCCEEECCSSCCC-SC-CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred             cccccc-ccCccccccCCcc-cc-Cccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccc
Confidence            355566 7889999999988 56 5443  689999999999999888889999999999999999998     678899


Q ss_pred             CCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          126 LLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       126 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      +|++|++++|+++ .+|+.+..+++|++|++++|+..
T Consensus       220 ~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         220 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             cceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            9999999999998 67889999999999999999853

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=4.4e-13  Score=101.33  Aligned_cols=78  Identities=23%  Similarity=0.322  Sum_probs=56.5

Q ss_pred             cCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccCCCCCCcccccccCCCCCcEE
Q 038525           78 FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQ  154 (165)
Q Consensus        78 ~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L  154 (165)
                      +..+++++.+++++|++++. + .+..+++|+.|++++|+++   .+.++++|++|++++|++++..|  +.++++|+.|
T Consensus       303 ~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L  378 (384)
T d2omza2         303 ISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL  378 (384)
T ss_dssp             GGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEE
T ss_pred             cchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEe
Confidence            55567777777777777743 3 2667778888888888776   56777778888888888775443  6777788888


Q ss_pred             EccCC
Q 038525          155 CVWTC  159 (165)
Q Consensus       155 ~l~~n  159 (165)
                      ++++|
T Consensus       379 ~L~~N  383 (384)
T d2omza2         379 GLNDQ  383 (384)
T ss_dssp             ECCCE
T ss_pred             eCCCC
Confidence            88776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.42  E-value=1.2e-15  Score=107.25  Aligned_cols=106  Identities=19%  Similarity=0.197  Sum_probs=90.5

Q ss_pred             hhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcC
Q 038525           50 QCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILL  126 (165)
Q Consensus        50 ~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~  126 (165)
                      ..+..++ +|++|++++|.++ .+ + .+..+++|++|++++|.++ .+|..+..+++|++|++++|+++   .+..+++
T Consensus        42 ~sl~~L~-~L~~L~Ls~n~I~-~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~  116 (198)
T d1m9la_          42 ATLSTLK-ACKHLALSTNNIE-KI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVN  116 (198)
T ss_dssp             HHHHHTT-TCCEEECSEEEES-CC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCHHHHHHHHH
T ss_pred             hHHhccc-ccceeECcccCCC-Cc-c-cccCCccccChhhcccccc-ccccccccccccccccccccccccccccccccc
Confidence            3467777 8999999999998 55 4 5889999999999999998 67765666678999999999998   5778899


Q ss_pred             CCEEeccCCCCCCccc--ccccCCCCCcEEEccCCcc
Q 038525          127 LQNLDLSHNNLSDSQF--RFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       127 L~~L~ls~N~l~~~~p--~~~~~l~~L~~L~l~~n~~  161 (165)
                      |+.|++++|+++. ++  ..+..+++|+.|++++|+.
T Consensus       117 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         117 LRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccccchhcc-ccccccccCCCccceeecCCCcc
Confidence            9999999999984 44  4688999999999999974

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=1.8e-12  Score=91.36  Aligned_cols=119  Identities=23%  Similarity=0.225  Sum_probs=83.7

Q ss_pred             cccccccccccCCCch-hhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCC---------------
Q 038525           34 KTSFTQQRLVEGQDSS-QCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGS---------------   97 (165)
Q Consensus        34 l~~l~~~~~~~~~~~~-~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~---------------   97 (165)
                      +++|..+++..+.+.. ..+..++ +|++|++++|+++ .+ | .+..+++|+.+++++|.+...               
T Consensus        67 l~~L~~L~L~~n~i~~l~~~~~l~-~L~~L~l~~n~i~-~l-~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~  142 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTDIKPLANLK-NLGWLFLDENKVK-DL-S-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG  142 (210)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCC-CG-G-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred             CCCCCEEeCCCccccCccccccCc-ccccccccccccc-cc-c-cccccccccccccccccccccccccccccccccccc
Confidence            3445555554444421 2245556 6778888888776 34 3 466677777777766655421               


Q ss_pred             -----CCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccC
Q 038525           98 -----IPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWT  158 (165)
Q Consensus        98 -----~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~  158 (165)
                           .+..+..+++|+.+++++|+++   .+.++++|++|++++|.++ .+| .+.++++|++|++++
T Consensus       143 ~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         143 NNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             SSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence                 1223556789999999999998   6788999999999999998 565 589999999999974

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.9e-12  Score=86.41  Aligned_cols=85  Identities=20%  Similarity=0.221  Sum_probs=67.4

Q ss_pred             hhccccCeeEEEeecCC-CCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcC
Q 038525           52 FRSLQLGWYHIELVECS-IKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILL  126 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~-l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~  126 (165)
                      +..++ ++++|++++|+ ++ .+++..|.++++|+.|++++|+|+...|..|..+++|++|++++|+++    ......+
T Consensus        27 l~~l~-~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~  104 (156)
T d2ifga3          27 LPGAE-NLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS  104 (156)
T ss_dssp             SCSCS-CCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC
T ss_pred             ccCcc-ccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcccc
Confidence            44555 78899997664 77 443778999999999999999999777788899999999999999988    2223346


Q ss_pred             CCEEeccCCCCC
Q 038525          127 LQNLDLSHNNLS  138 (165)
Q Consensus       127 L~~L~ls~N~l~  138 (165)
                      |+.|++++|.+.
T Consensus       105 l~~L~L~~Np~~  116 (156)
T d2ifga3         105 LQELVLSGNPLH  116 (156)
T ss_dssp             CCEEECCSSCCC
T ss_pred             ccccccCCCccc
Confidence            899999999885

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=1.6e-11  Score=87.11  Aligned_cols=57  Identities=18%  Similarity=0.203  Sum_probs=39.8

Q ss_pred             CCCCCCCEEEcCCCCCC---CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525          103 GSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       103 ~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      ..+++|+.|++++|.++   .++.+++|+.|++++|++++ +| .+.++++|++|++++|+.
T Consensus       148 ~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~l  207 (227)
T d1h6ua2         148 AGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQI  207 (227)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCC
T ss_pred             ccccccccccccccccccchhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcC
Confidence            33445555666555554   56677888888888888874 44 377888888888888875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.31  E-value=1.1e-11  Score=87.89  Aligned_cols=94  Identities=19%  Similarity=0.208  Sum_probs=75.7

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSH  134 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~  134 (165)
                      .++.+.++++.+...   ..+..+++|+.|++++|.+++ .+ .++.+++|+.|++++|+++   .+.++++|++|++++
T Consensus       130 ~~~~l~~~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~  204 (227)
T d1h6ua2         130 NLQVLYLDLNQITNI---SPLAGLTNLQYLSIGNAQVSD-LT-PLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKN  204 (227)
T ss_dssp             TCCEEECCSSCCCCC---GGGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTT
T ss_pred             chhhhhchhhhhchh---hhhcccccccccccccccccc-ch-hhcccccceecccCCCccCCChhhcCCCCCCEEECcC
Confidence            455666666655432   246778899999999999973 33 3889999999999999998   678899999999999


Q ss_pred             CCCCCcccccccCCCCCcEEEccC
Q 038525          135 NNLSDSQFRFVIPYLRLSVQCVWT  158 (165)
Q Consensus       135 N~l~~~~p~~~~~l~~L~~L~l~~  158 (165)
                      |++++ +| .+.++++|++|++++
T Consensus       205 N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         205 NQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             SCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             CcCCC-Cc-ccccCCCCCEEEeeC
Confidence            99985 54 388999999999974

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.29  E-value=2e-11  Score=92.07  Aligned_cols=105  Identities=21%  Similarity=0.261  Sum_probs=75.2

Q ss_pred             hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCC--------------------CcCcCCCCCCCEE
Q 038525           52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSI--------------------PPQIGSLLKLKYL  111 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~--------------------p~~~~~l~~L~~L  111 (165)
                      +..++ +++++++++|.+++..   .++.+++|+++++++|.+++..                    +..+..+++++.+
T Consensus       237 l~~l~-~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L  312 (384)
T d2omza2         237 LASLT-NLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL  312 (384)
T ss_dssp             GGGCT-TCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEE
T ss_pred             hhccc-ccchhccccCccCCCC---cccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeE
Confidence            34444 5666666666666432   2556666666666666655321                    1235667788888


Q ss_pred             EcCCCCCC---CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525          112 NLRWKNLT---EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST  162 (165)
Q Consensus       112 ~ls~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~  162 (165)
                      ++++|+++   .+..+++|++|++++|++++ +| .+.++++|++|++++|+..
T Consensus       313 ~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         313 TLYFNNISDISPVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             ECCSSCCSCCGGGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCCcccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCC
Confidence            88888888   57889999999999999984 55 6899999999999999853

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.2e-11  Score=88.24  Aligned_cols=72  Identities=19%  Similarity=0.231  Sum_probs=46.8

Q ss_pred             CchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEccc-CcCCCCCCcCcCCCCCCCEEEcCCCCCC
Q 038525           47 DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWN-NDLSGSIPPQIGSLLKLKYLNLRWKNLT  119 (165)
Q Consensus        47 ~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~-N~l~~~~p~~~~~l~~L~~L~ls~n~l~  119 (165)
                      ++...|.+++ +|++|++++|.+...+++..|.+++.++++++.. |.+....+..|..+++|+.+++++|.++
T Consensus        44 l~~~~f~~l~-~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          44 IQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             ECTTTTTTCT-TCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             cChhHhhccc-hhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhc
Confidence            3555677777 7888888888776555355566677777666543 4555455556666777777777666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=1.6e-14  Score=101.38  Aligned_cols=99  Identities=18%  Similarity=0.167  Sum_probs=81.7

Q ss_pred             hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccCc
Q 038525           52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKIL  125 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l~  125 (165)
                      +..++ +|++|++++|.++ .+ |..+..+++|++|++++|.++ .++ .+..+++|+.|++++|+++      .+..++
T Consensus        66 l~~l~-~L~~L~Ls~N~i~-~i-~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~  140 (198)
T d1m9la_          66 LSGME-NLRILSLGRNLIK-KI-ENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALD  140 (198)
T ss_dssp             HHHHT-TCCEEECCEEEEC-SC-SSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTT
T ss_pred             ccCCc-cccChhhcccccc-cc-ccccccccccccccccccccc-ccc-cccccccccccccccchhccccccccccCCC
Confidence            66777 8999999999998 66 655666778999999999998 443 4778999999999999997      467899


Q ss_pred             CCCEEeccCCCCCCccccc----------ccCCCCCcEEE
Q 038525          126 LLQNLDLSHNNLSDSQFRF----------VIPYLRLSVQC  155 (165)
Q Consensus       126 ~L~~L~ls~N~l~~~~p~~----------~~~l~~L~~L~  155 (165)
                      +|+.|++++|++....+..          +..+++|+.||
T Consensus       141 ~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         141 KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             TCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            9999999999986444332          56788999886

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.18  E-value=1.1e-10  Score=86.74  Aligned_cols=93  Identities=22%  Similarity=0.147  Sum_probs=73.3

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCCCccCc-CCCEEeccCCC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKIL-LLQNLDLSHNN  136 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~l~-~L~~L~ls~N~  136 (165)
                      ++++|+++++.++ .+ |..   .++|++|++++|+|+ .+|+.+   .+|+.|++++|+++.+..++ .|++|++++|.
T Consensus        39 ~l~~LdLs~~~L~-~l-p~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~  109 (353)
T d1jl5a_          39 QAHELELNNLGLS-SL-PEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQ  109 (353)
T ss_dssp             TCSEEECTTSCCS-CC-CSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSCCCSCCTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCCC-CC-CCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccchhhhhccccccccccccc
Confidence            3558999999987 67 643   468899999999998 778653   57888899999888666654 58999999999


Q ss_pred             CCCcccccccCCCCCcEEEccCCcc
Q 038525          137 LSDSQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       137 l~~~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      +. .+|+ +..+++|+.|++++|..
T Consensus       110 l~-~lp~-~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         110 LE-KLPE-LQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             CS-SCCC-CTTCTTCCEEECCSSCC
T ss_pred             cc-cccc-hhhhccceeeccccccc
Confidence            87 5664 57788999999988764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.1e-10  Score=81.65  Aligned_cols=102  Identities=18%  Similarity=0.159  Sum_probs=77.5

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCC-CcCcCCCCCCCEEEcCC-CCCC-----CCccCcCCCEE
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSI-PPQIGSLLKLKYLNLRW-KNLT-----EIGKILLLQNL  130 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~-p~~~~~l~~L~~L~ls~-n~l~-----~~~~l~~L~~L  130 (165)
                      ++++|++++|.++... +..|.++++|++|++++|.+...+ +..|..++.++.+++.. |.+.     .+.++++|+++
T Consensus        30 ~l~~L~Ls~n~i~~l~-~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CCSEEEEESCCCCEEC-TTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCEEECcCCcCCccC-hhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            5679999999998443 667999999999999999987544 45678899999998764 5665     57889999999


Q ss_pred             eccCCCCCCcccc-cccCCCCCcEEEccCCc
Q 038525          131 DLSHNNLSDSQFR-FVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       131 ~ls~N~l~~~~p~-~~~~l~~L~~L~l~~n~  160 (165)
                      ++++|.+....+. .+..+..+..+...+++
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~  139 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNIN  139 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTT
T ss_pred             ccchhhhcccccccccccccccccccccccc
Confidence            9999999743222 23344555555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.86  E-value=2.6e-08  Score=73.42  Aligned_cols=95  Identities=18%  Similarity=0.098  Sum_probs=67.6

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccC
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSH  134 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~  134 (165)
                      ++++|++++|+++ .+ |..   +.+|+.|++++|.++ .+++.   .+.|++|++++|.++   .++.+++|+.+++++
T Consensus        59 ~L~~L~Ls~N~l~-~l-p~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~  129 (353)
T d1jl5a_          59 HLESLVASCNSLT-EL-PEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDN  129 (353)
T ss_dssp             TCSEEECCSSCCS-SC-CCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCS
T ss_pred             CCCEEECCCCCCc-cc-ccc---hhhhhhhhhhhcccc-hhhhh---ccccccccccccccccccchhhhccceeecccc
Confidence            6779999999988 67 654   357888889988887 45431   246888999988887   566788888888888


Q ss_pred             CCCCCccc------------------ccccCCCCCcEEEccCCcc
Q 038525          135 NNLSDSQF------------------RFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       135 N~l~~~~p------------------~~~~~l~~L~~L~l~~n~~  161 (165)
                      |.+....+                  ..+..+..++.++++.|..
T Consensus       130 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         130 NSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             SCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccccchhhccccccccccccccccceecccccccc
Confidence            87753221                  2234455666777776654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.4e-10  Score=87.31  Aligned_cols=104  Identities=14%  Similarity=0.055  Sum_probs=70.2

Q ss_pred             CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCC----CCCcCcCCCCCCCEEEcCCCCCC---------CCc-c
Q 038525           58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSG----SIPPQIGSLLKLKYLNLRWKNLT---------EIG-K  123 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~----~~p~~~~~l~~L~~L~ls~n~l~---------~~~-~  123 (165)
                      +|++||+++|++++.--..-+..++++++|+|++|.++.    .++..+...++|++||+++|+++         .+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            577888888888642102234556788888888887762    22334567788888888888875         221 2


Q ss_pred             CcCCCEEeccCCCCCCc----ccccccCCCCCcEEEccCCcc
Q 038525          124 ILLLQNLDLSHNNLSDS----QFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       124 l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      ..+|++|++++|.++..    ++..+..+++|++|++++|+.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            34688888888887632    345667788888888888764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.7e-09  Score=77.96  Aligned_cols=124  Identities=19%  Similarity=0.195  Sum_probs=78.5

Q ss_pred             ccccccccccCCCchh----hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccC-cCCCC-CCcCcCCCCCC
Q 038525           35 TSFTQQRLVEGQDSSQ----CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNN-DLSGS-IPPQIGSLLKL  108 (165)
Q Consensus        35 ~~l~~~~~~~~~~~~~----~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N-~l~~~-~p~~~~~l~~L  108 (165)
                      .++...++....+...    .+...+ +|++|+++++.+.... +..++.+++|++|+++++ .++.. +..-...+++|
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~-~L~~L~L~~~~l~~~~-~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCS-KLQNLSLEGLRLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBC-CCSEEECTTCBCCHHH-HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCC-CcccccccccCCCcHH-HHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            3455555554444332    345556 7888888888877666 667777888888888874 45421 11112346677


Q ss_pred             CEEEcCCC-CCC----------------------------------CCccCcCCCEEeccCC-CCCCcccccccCCCCCc
Q 038525          109 KYLNLRWK-NLT----------------------------------EIGKILLLQNLDLSHN-NLSDSQFRFVIPYLRLS  152 (165)
Q Consensus       109 ~~L~ls~n-~l~----------------------------------~~~~l~~L~~L~ls~N-~l~~~~p~~~~~l~~L~  152 (165)
                      ++|+++++ .++                                  ....+++|++|++++| .+++.....+.++++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            77777664 232                                  1123567888888875 46656667777888888


Q ss_pred             EEEccCCc
Q 038525          153 VQCVWTCH  160 (165)
Q Consensus       153 ~L~l~~n~  160 (165)
                      +|++++|.
T Consensus       204 ~L~L~~C~  211 (284)
T d2astb2         204 HLSLSRCY  211 (284)
T ss_dssp             EEECTTCT
T ss_pred             EEECCCCC
Confidence            88888864

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.57  E-value=8e-09  Score=77.04  Aligned_cols=106  Identities=18%  Similarity=0.124  Sum_probs=77.1

Q ss_pred             ccccCeeEEEeecCCCCcc-----cCCcccCCCCCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEcCCCCCC-----
Q 038525           54 SLQLGWYHIELVECSIKGE-----LGSLNFSCFSNLQYINLWNNDLSGS----IPPQIGSLLKLKYLNLRWKNLT-----  119 (165)
Q Consensus        54 ~l~~~L~~L~ls~n~l~~~-----~~p~~~~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~ls~n~l~-----  119 (165)
                      ..+ .+++|++++|.+...     + ...+...++|+.|++++|.++..    +...+...++|++|++++|.++     
T Consensus       184 ~~~-~L~~L~L~~n~i~~~g~~~~l-~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         184 SHR-LLHTVKMVQNGIRPEGIEHLL-LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HCT-TCCEEECCSSCCCHHHHHHHH-HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhh-hhcccccccccccccccccch-hhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            344 688999999988632     3 34567788999999999987532    3345667889999999999987     


Q ss_pred             ----CCc--cCcCCCEEeccCCCCCCc----cccccc-CCCCCcEEEccCCcc
Q 038525          120 ----EIG--KILLLQNLDLSHNNLSDS----QFRFVI-PYLRLSVQCVWTCHS  161 (165)
Q Consensus       120 ----~~~--~l~~L~~L~ls~N~l~~~----~p~~~~-~l~~L~~L~l~~n~~  161 (165)
                          .+.  ..+.|++|++++|.++..    +...+. +.+.|++|++++|+.
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence                222  246799999999988632    223332 567899999999885

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=4.7e-09  Score=70.64  Aligned_cols=78  Identities=28%  Similarity=0.152  Sum_probs=48.2

Q ss_pred             cCCCCCCcEEEcccCcCCCCC--CcCcCCCCCCCEEEcCCCCCCC-----CccCcCCCEEeccCCCCCCcccc-------
Q 038525           78 FSCFSNLQYINLWNNDLSGSI--PPQIGSLLKLKYLNLRWKNLTE-----IGKILLLQNLDLSHNNLSDSQFR-------  143 (165)
Q Consensus        78 ~~~l~~L~~L~ls~N~l~~~~--p~~~~~l~~L~~L~ls~n~l~~-----~~~l~~L~~L~ls~N~l~~~~p~-------  143 (165)
                      +..+++|++|++++|+|+..-  +..+..+++|+.|++++|.++.     +.....|+.+++++|.+......       
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            345677777777777777332  2334557777777777777761     12234577777788777644332       


Q ss_pred             cccCCCCCcEEE
Q 038525          144 FVIPYLRLSVQC  155 (165)
Q Consensus       144 ~~~~l~~L~~L~  155 (165)
                      .+..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            245677777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=6.6e-09  Score=69.89  Aligned_cols=78  Identities=23%  Similarity=0.116  Sum_probs=59.7

Q ss_pred             hhccccCeeEEEeecCCCCcccC-CcccCCCCCCcEEEcccCcCCCCCCc-CcCCCCCCCEEEcCCCCCC----------
Q 038525           52 FRSLQLGWYHIELVECSIKGELG-SLNFSCFSNLQYINLWNNDLSGSIPP-QIGSLLKLKYLNLRWKNLT----------  119 (165)
Q Consensus        52 ~~~l~~~L~~L~ls~n~l~~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~l~~L~~L~ls~n~l~----------  119 (165)
                      +..++ .|++|++++|+++..-+ +..+..+++|+.|++++|.++ .+++ .+.....|+.+++++|++.          
T Consensus        61 ~~~~~-~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          61 EENIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHCT-TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHhCC-CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            34566 79999999999984320 345678999999999999999 4443 3445567999999999987          


Q ss_pred             --CCccCcCCCEEe
Q 038525          120 --EIGKILLLQNLD  131 (165)
Q Consensus       120 --~~~~l~~L~~L~  131 (165)
                        .+..+++|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence              245689999886

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.37  E-value=4.8e-08  Score=72.71  Aligned_cols=103  Identities=15%  Similarity=0.083  Sum_probs=70.8

Q ss_pred             CeeEEEeecCCCCcc----cCCcccCCCCCCcEEEcccCcCCCC-----CCcCcCCCCCCCEEEcCCCCCC---------
Q 038525           58 GWYHIELVECSIKGE----LGSLNFSCFSNLQYINLWNNDLSGS-----IPPQIGSLLKLKYLNLRWKNLT---------  119 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~----~~p~~~~~l~~L~~L~ls~N~l~~~-----~p~~~~~l~~L~~L~ls~n~l~---------  119 (165)
                      .++.+++++|.+...    + ...+...+.|+.+++++|.++..     +...+...++|+.|++++|.++         
T Consensus       159 ~L~~l~l~~n~i~~~~~~~l-~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~  237 (344)
T d2ca6a1         159 PLRSIICGRNRLENGSMKEW-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  237 (344)
T ss_dssp             CCCEEECCSSCCTGGGHHHH-HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             ccceeecccccccccccccc-cchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence            455666666665421    1 22244567899999999988632     2334667788999999999886         


Q ss_pred             CCccCcCCCEEeccCCCCCCcccc----ccc--CCCCCcEEEccCCcc
Q 038525          120 EIGKILLLQNLDLSHNNLSDSQFR----FVI--PYLRLSVQCVWTCHS  161 (165)
Q Consensus       120 ~~~~l~~L~~L~ls~N~l~~~~p~----~~~--~l~~L~~L~l~~n~~  161 (165)
                      .+..+++|++|++++|.+++.-..    .+.  ....|+.|++++|+.
T Consensus       238 ~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i  285 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  285 (344)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcC
Confidence            466788899999999988743222    232  246799999999875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=4.3e-08  Score=74.48  Aligned_cols=103  Identities=20%  Similarity=0.140  Sum_probs=55.0

Q ss_pred             CeeEEEeecCCCCcccCCc----ccCCCCCCcEEEcccCcCCCC----CCcCcC-CCCCCCEEEcCCCCCC---------
Q 038525           58 GWYHIELVECSIKGELGSL----NFSCFSNLQYINLWNNDLSGS----IPPQIG-SLLKLKYLNLRWKNLT---------  119 (165)
Q Consensus        58 ~L~~L~ls~n~l~~~~~p~----~~~~l~~L~~L~ls~N~l~~~----~p~~~~-~l~~L~~L~ls~n~l~---------  119 (165)
                      .++.+++++|.+.... ..    .+...++|++|++++|.+++.    ++..+. ....|++|++++|.++         
T Consensus       313 ~L~~l~l~~~~l~~~~-~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  391 (460)
T d1z7xw1         313 QLESLWVKSCSFTAAC-CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  391 (460)
T ss_dssp             CCCEEECTTSCCBGGG-HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             ccccccccccchhhhh-hhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence            4556666666655321 11    223345677777777766421    222222 3455777777777776         


Q ss_pred             CCccCcCCCEEeccCCCCCCcccc----ccc-CCCCCcEEEccCCcc
Q 038525          120 EIGKILLLQNLDLSHNNLSDSQFR----FVI-PYLRLSVQCVWTCHS  161 (165)
Q Consensus       120 ~~~~l~~L~~L~ls~N~l~~~~p~----~~~-~l~~L~~L~l~~n~~  161 (165)
                      .+..+++|++|++++|+++.....    .+. +...|+.|++++|..
T Consensus       392 ~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~  438 (460)
T d1z7xw1         392 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW  438 (460)
T ss_dssp             HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             HHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence            234456677777777776532221    222 233567777766653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.28  E-value=2e-07  Score=62.74  Aligned_cols=102  Identities=14%  Similarity=0.026  Sum_probs=74.1

Q ss_pred             CeeEEEeecC-CCCcc----cCCcccCCCCCCcEEEcccCcCCCCCC----cCcCCCCCCCEEEcCCCCCC---------
Q 038525           58 GWYHIELVEC-SIKGE----LGSLNFSCFSNLQYINLWNNDLSGSIP----PQIGSLLKLKYLNLRWKNLT---------  119 (165)
Q Consensus        58 ~L~~L~ls~n-~l~~~----~~p~~~~~l~~L~~L~ls~N~l~~~~p----~~~~~l~~L~~L~ls~n~l~---------  119 (165)
                      ++++|+++++ .+...    + -..+...+.|++|++++|.++....    ..+...+.|+.|++++|.++         
T Consensus        16 ~L~~L~L~~~~~i~~~~~~~l-~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          16 DLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SCCEEECTTCCSSCHHHHHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCcEEEeCCCCCCCHHHHHHH-HHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            6889999874 45422    2 2346677889999999998863222    23445688999999999998         


Q ss_pred             CCccCcCCCEEeccCCCCCCc-------ccccccCCCCCcEEEccCCc
Q 038525          120 EIGKILLLQNLDLSHNNLSDS-------QFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       120 ~~~~l~~L~~L~ls~N~l~~~-------~p~~~~~l~~L~~L~l~~n~  160 (165)
                      .+...++|++|++++|.+...       +.+.+...++|+.|+++.+.
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            567778899999999876521       34456667889999987653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.3e-07  Score=67.49  Aligned_cols=101  Identities=18%  Similarity=0.109  Sum_probs=73.8

Q ss_pred             eeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCC-CCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525           59 WYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGS-IPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL  132 (165)
Q Consensus        59 L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l  132 (165)
                      +..+.++.......  ........+|++||++++.++.. ++..+..+++|++|+++++.++     .++.+++|++|++
T Consensus        25 ~~~lrl~~~~~~~~--~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  102 (284)
T d2astb2          25 VIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  102 (284)
T ss_dssp             CSEEECTTCEECSC--CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ceEeeccccccccc--hhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccc
Confidence            44666666554422  23344567899999999988743 3445678999999999999987     6778899999999


Q ss_pred             cCC-CCCC-cccccccCCCCCcEEEccCCcc
Q 038525          133 SHN-NLSD-SQFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       133 s~N-~l~~-~~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      +++ .++. .+......+++|++|++++|..
T Consensus       103 s~c~~itd~~l~~l~~~~~~L~~L~ls~c~~  133 (284)
T d2astb2         103 SGCSGFSEFALQTLLSSCSRLDELNLSWCFD  133 (284)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred             cccccccccccchhhHHHHhccccccccccc
Confidence            995 5542 1233346789999999998753

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.74  E-value=6.2e-06  Score=55.11  Aligned_cols=83  Identities=13%  Similarity=0.048  Sum_probs=62.4

Q ss_pred             CCCCCCcEEEcccC-cCCCC----CCcCcCCCCCCCEEEcCCCCCC---------CCccCcCCCEEeccCCCCCCc----
Q 038525           79 SCFSNLQYINLWNN-DLSGS----IPPQIGSLLKLKYLNLRWKNLT---------EIGKILLLQNLDLSHNNLSDS----  140 (165)
Q Consensus        79 ~~l~~L~~L~ls~N-~l~~~----~p~~~~~l~~L~~L~ls~n~l~---------~~~~l~~L~~L~ls~N~l~~~----  140 (165)
                      .+.++|+.|+++++ .++..    +-..+...+.|+.|++++|.++         .+...+.|++|++++|.+...    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34578999999974 46521    1224567788999999999998         345568899999999998742    


Q ss_pred             ccccccCCCCCcEEEccCCcc
Q 038525          141 QFRFVIPYLRLSVQCVWTCHS  161 (165)
Q Consensus       141 ~p~~~~~l~~L~~L~l~~n~~  161 (165)
                      +-..+...+.|+.|++++|+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSS
T ss_pred             HHHHHHhCCcCCEEECCCCcC
Confidence            223567778999999998863

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.58  E-value=5.7e-06  Score=55.08  Aligned_cols=102  Identities=10%  Similarity=0.034  Sum_probs=71.5

Q ss_pred             CeeEEEeec-CCCCcc----cCCcccCCCCCCcEEEcccCcCCCCCC----cCcCCCCCCCEEEcCCCCCC---------
Q 038525           58 GWYHIELVE-CSIKGE----LGSLNFSCFSNLQYINLWNNDLSGSIP----PQIGSLLKLKYLNLRWKNLT---------  119 (165)
Q Consensus        58 ~L~~L~ls~-n~l~~~----~~p~~~~~l~~L~~L~ls~N~l~~~~p----~~~~~l~~L~~L~ls~n~l~---------  119 (165)
                      +|++|++++ +.++..    + -..+...++|++|++++|.++...-    ..+...+.++.+++++|.++         
T Consensus        18 ~L~~L~L~~~~~i~~~~~~~l-~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          18 DLEEVNLNNIMNIPVPTLKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TCCEEECTTCTTCCHHHHHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCcEEEcCCCCCCCHHHHHHH-HHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            688999987 445421    2 3345678889999999998863322    23455688999999999887         


Q ss_pred             CCccCcCCCEEec--cCCCCCC----cccccccCCCCCcEEEccCCc
Q 038525          120 EIGKILLLQNLDL--SHNNLSD----SQFRFVIPYLRLSVQCVWTCH  160 (165)
Q Consensus       120 ~~~~l~~L~~L~l--s~N~l~~----~~p~~~~~l~~L~~L~l~~n~  160 (165)
                      .+...++|+.++|  ++|.+..    .+.+.+...+.|+.|+++.+.
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            5677788887555  5667643    244556678899999987764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.75  E-value=0.00037  Score=45.89  Aligned_cols=81  Identities=14%  Similarity=0.036  Sum_probs=60.4

Q ss_pred             CCCCCCcEEEccc-CcCCCC----CCcCcCCCCCCCEEEcCCCCCC---------CCccCcCCCEEeccCCCCCCc----
Q 038525           79 SCFSNLQYINLWN-NDLSGS----IPPQIGSLLKLKYLNLRWKNLT---------EIGKILLLQNLDLSHNNLSDS----  140 (165)
Q Consensus        79 ~~l~~L~~L~ls~-N~l~~~----~p~~~~~l~~L~~L~ls~n~l~---------~~~~l~~L~~L~ls~N~l~~~----  140 (165)
                      .+.+.|++|++++ +.++..    +-..+...++|+.|++++|.++         .+...++++.+++++|.+...    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4568999999997 456522    1223557889999999999998         456678999999999998532    


Q ss_pred             ccccccCCCCCcEEEccCC
Q 038525          141 QFRFVIPYLRLSVQCVWTC  159 (165)
Q Consensus       141 ~p~~~~~l~~L~~L~l~~n  159 (165)
                      +-+.+...++|+.++++.+
T Consensus        94 l~~~l~~~~~L~~l~L~l~  112 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQ  112 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCC
T ss_pred             HHHHHHhCccccEEeeccC
Confidence            2356778889998777643