Citrus Sinensis ID: 038539

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAGDSVVALHRMHIASVLKILVVN
cccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHccccccEEEEEcccccccccccccccHHHHHHHHcccccEEccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEcccccccEEEEEEcc
EEcHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHccccccEEEEEcccEcccccEEEcccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccEEEEEEEEc
mlsgetaagaypeIAVQTMARICLEAenfinygdlskkimetapmpmsplesLASSAVRTANCIKAALILVLTRggttakmvskyrpsmpilsvivpeiktdsivwscsdeapathslifrglvpvlgsgsarasdeesTEETIEFALQHAMAKGLCRAGDSVVALHRMHIASVLKILVVN
mlsgetaagaypeiAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAkmvskyrpsmpiLSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAGDSVVALHRMHIASVLKILVVN
MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAGDSVVALHRMHIASVLKILVVN
*********AYPEIAVQTMARICLEAENFINYGDLSKKI*****************AVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLG***************IEFALQHAMAKGLCRAGDSVVALHRMHIASVLKILVV*
MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSK**********SPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAGDSVVALHRMHIASVLKILVVN
********GAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVL****************IEFALQHAMAKGLCRAGDSVVALHRMHIASVLKILVVN
MLSG*TAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAGDSVVALHRMHIASVLKILVVN
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAGDSVVALHRMHIASVLKILVVN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query181 2.2.26 [Sep-21-2011]
Q42954508 Pyruvate kinase, cytosoli N/A no 0.994 0.354 0.761 4e-76
O65595497 Probable pyruvate kinase, no no 1.0 0.364 0.668 9e-66
Q42806511 Pyruvate kinase, cytosoli no no 1.0 0.354 0.646 3e-65
P22200510 Pyruvate kinase, cytosoli N/A no 0.994 0.352 0.633 4e-62
Q54RF5507 Pyruvate kinase OS=Dictyo yes no 0.801 0.285 0.401 1e-20
O44006531 Pyruvate kinase OS=Eimeri N/A no 0.867 0.295 0.365 2e-20
Q27686499 Pyruvate kinase OS=Leishm N/A no 0.917 0.332 0.342 2e-18
P46614504 Pyruvate kinase OS=Candid N/A no 0.850 0.305 0.341 8e-18
Q7RVA8527 Pyruvate kinase OS=Neuros N/A no 0.850 0.292 0.321 1e-17
Q12669526 Pyruvate kinase OS=Asperg yes no 0.850 0.292 0.321 1e-17
>sp|Q42954|KPYC_TOBAC Pyruvate kinase, cytosolic isozyme OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function desciption
 Score =  283 bits (724), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 137/180 (76%), Positives = 159/180 (88%)

Query: 1   MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRT 60
           MLSGETAAGAYP++AV TMA+IC+EAE+ I+Y D+ K+IM  AP+PMSPLESLASSAVRT
Sbjct: 328 MLSGETAAGAYPDLAVGTMAKICIEAESTIDYPDVFKRIMSNAPVPMSPLESLASSAVRT 387

Query: 61  ANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIF 120
           AN  KAALILVLTRGG+TAK+V+KYRP MPILSV+VPEIKTDS  W+CSDE+PA HSLIF
Sbjct: 388 ANSAKAALILVLTRGGSTAKLVAKYRPGMPILSVVVPEIKTDSFDWTCSDESPARHSLIF 447

Query: 121 RGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAGDSVVALHRMHIASVLKILVV 180
           RGLVPVL +GSARAS EESTEE ++FALQHA  KGLC+ GDSVVALHR+  ASV+KI+ V
Sbjct: 448 RGLVPVLHAGSARASHEESTEEALDFALQHAKTKGLCKQGDSVVALHRVGTASVIKIVTV 507

Nicotiana tabacum (taxid: 4097)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 0
>sp|O65595|KPYC_ARATH Probable pyruvate kinase, cytosolic isozyme OS=Arabidopsis thaliana GN=At4g26390 PE=3 SV=1 Back     alignment and function description
>sp|Q42806|KPYC_SOYBN Pyruvate kinase, cytosolic isozyme OS=Glycine max PE=2 SV=1 Back     alignment and function description
>sp|P22200|KPYC_SOLTU Pyruvate kinase, cytosolic isozyme OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q54RF5|KPYK_DICDI Pyruvate kinase OS=Dictyostelium discoideum GN=pyk PE=1 SV=1 Back     alignment and function description
>sp|O44006|KPYK_EIMTE Pyruvate kinase OS=Eimeria tenella GN=PYK PE=2 SV=1 Back     alignment and function description
>sp|Q27686|KPYK_LEIME Pyruvate kinase OS=Leishmania mexicana GN=PYK PE=1 SV=2 Back     alignment and function description
>sp|P46614|KPYK_CANAL Pyruvate kinase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CDC19 PE=1 SV=3 Back     alignment and function description
>sp|Q7RVA8|KPYK_NEUCR Pyruvate kinase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pyk-1 PE=3 SV=1 Back     alignment and function description
>sp|Q12669|KPYK_ASPNG Pyruvate kinase OS=Aspergillus niger GN=pkiA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query181
359481838 500 PREDICTED: pyruvate kinase, cytosolic is 1.0 0.362 0.779 7e-76
147821580 500 hypothetical protein VITISV_031893 [Viti 1.0 0.362 0.779 7e-76
449463834 500 PREDICTED: pyruvate kinase, cytosolic is 1.0 0.362 0.756 1e-74
2497543 508 RecName: Full=Pyruvate kinase, cytosolic 0.994 0.354 0.761 2e-74
224056925 493 predicted protein [Populus trichocarpa] 0.994 0.365 0.738 3e-74
255564804 509 pyruvate kinase, putative [Ricinus commu 0.994 0.353 0.744 1e-73
357510595 500 Pyruvate kinase [Medicago truncatula] gi 0.994 0.36 0.744 2e-73
224075958 495 predicted protein [Populus trichocarpa] 0.994 0.363 0.738 5e-73
217074474 500 unknown [Medicago truncatula] gi|3885165 0.994 0.36 0.738 1e-72
224123824 500 predicted protein [Populus trichocarpa] 1.0 0.362 0.751 2e-72
>gi|359481838|ref|XP_002282379.2| PREDICTED: pyruvate kinase, cytosolic isozyme-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  288 bits (737), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 141/181 (77%), Positives = 157/181 (86%)

Query: 1   MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRT 60
           MLSGETAAGAYPE+AVQTMARICLEAEN +NYGD+ K IMETAPMPMSP+ESLASSAVR 
Sbjct: 320 MLSGETAAGAYPELAVQTMARICLEAENSLNYGDVFKTIMETAPMPMSPIESLASSAVRA 379

Query: 61  ANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIF 120
           AN  KAALILVLTRGGTTA +V+KYRPSMPILSV+VPEI  DS  WSCSDE+PA H LIF
Sbjct: 380 ANGSKAALILVLTRGGTTANLVAKYRPSMPILSVVVPEITADSFDWSCSDESPARHGLIF 439

Query: 121 RGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAGDSVVALHRMHIASVLKILVV 180
           RGLVPVL SGSA+ASD ESTEE +EF+LQ+A  K +C+ GDSVVALHR+  ASV+KIL V
Sbjct: 440 RGLVPVLCSGSAKASDSESTEEALEFSLQYAKTKEMCKPGDSVVALHRVGTASVIKILTV 499

Query: 181 N 181
            
Sbjct: 500 K 500

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147821580|emb|CAN70030.1| hypothetical protein VITISV_031893 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449463834|ref|XP_004149636.1| PREDICTED: pyruvate kinase, cytosolic isozyme-like [Cucumis sativus] gi|449519038|ref|XP_004166542.1| PREDICTED: pyruvate kinase, cytosolic isozyme-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|2497543|sp|Q42954.1|KPYC_TOBAC RecName: Full=Pyruvate kinase, cytosolic isozyme; Short=PK gi|444023|emb|CAA82628.1| pyruvate kinase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|224056925|ref|XP_002299092.1| predicted protein [Populus trichocarpa] gi|222846350|gb|EEE83897.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255564804|ref|XP_002523396.1| pyruvate kinase, putative [Ricinus communis] gi|223537346|gb|EEF38975.1| pyruvate kinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357510595|ref|XP_003625586.1| Pyruvate kinase [Medicago truncatula] gi|355500601|gb|AES81804.1| Pyruvate kinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|224075958|ref|XP_002304847.1| predicted protein [Populus trichocarpa] gi|222842279|gb|EEE79826.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|217074474|gb|ACJ85597.1| unknown [Medicago truncatula] gi|388516555|gb|AFK46339.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224123824|ref|XP_002319173.1| predicted protein [Populus trichocarpa] gi|222857549|gb|EEE95096.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query181
TAIR|locus:2161068498 AT5G56350 [Arabidopsis thalian 0.994 0.361 0.716 7.6e-64
TAIR|locus:2160599510 AT5G63680 [Arabidopsis thalian 0.994 0.352 0.677 7.1e-61
TAIR|locus:2131453497 AT4G26390 [Arabidopsis thalian 0.994 0.362 0.672 1.3e-59
TAIR|locus:2159577510 AT5G08570 [Arabidopsis thalian 0.994 0.352 0.638 1.9e-58
TAIR|locus:2095953510 AT3G04050 [Arabidopsis thalian 0.994 0.352 0.597 2.1e-52
TAIR|locus:2078956492 AT3G55810 [Arabidopsis thalian 0.994 0.365 0.554 4.8e-46
TAIR|locus:2078966510 AT3G55650 [Arabidopsis thalian 0.994 0.352 0.543 3.4e-45
TAIR|locus:2092085497 AT3G25960 [Arabidopsis thalian 0.933 0.340 0.543 9.3e-43
TAIR|locus:2085226527 AT3G52990 [Arabidopsis thalian 0.983 0.337 0.402 8e-31
TAIR|locus:2044928527 AT2G36580 [Arabidopsis thalian 0.983 0.337 0.402 1.8e-30
TAIR|locus:2161068 AT5G56350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 129/180 (71%), Positives = 155/180 (86%)

Query:     1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRT 60
             MLSGETAAGAYPE+AV+TMA+IC+EAE+ ++YGD+ K+IM  +P+PMSPLESLASSAVRT
Sbjct:   318 MLSGETAAGAYPELAVRTMAKICVEAESTLDYGDVFKRIMLYSPVPMSPLESLASSAVRT 377

Query:    61 ANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIF 120
             AN  +A LI+VLTRGG+TA++V+KYRP MPILSV+VPEIKTD   WSCSDE+PA HSLIF
Sbjct:   378 ANSARATLIMVLTRGGSTARLVAKYRPGMPILSVVVPEIKTDFFDWSCSDESPARHSLIF 437

Query:   121 RGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAGDSVVALHRMHIASVLKILVV 180
             RGL+PVL +GSARAS +ESTEE IEFA Q+   K LC+ GDSVVAL R+  ASV+KIL V
Sbjct:   438 RGLIPVLYAGSARASHDESTEEAIEFATQYGKEKELCKTGDSVVALLRVGNASVIKILTV 497
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0004743 "pyruvate kinase activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006096 "glycolysis" evidence=IEA;ISS
GO:0030955 "potassium ion binding" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006865 "amino acid transport" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
TAIR|locus:2160599 AT5G63680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131453 AT4G26390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159577 AT5G08570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095953 AT3G04050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078956 AT3G55810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078966 AT3G55650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092085 AT3G25960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085226 AT3G52990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044928 AT2G36580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.1.40LOW CONFIDENCE prediction!
3rd Layer2.7.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_I000007
pyruvate kinase (EC-2.7.1.40) (493 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00030830
lactate dehydrogenase (EC-1.1.1.27) (351 aa)
     •• 0.942
estExt_fgenesh4_pm.C_280132
RecName- Full=Enolase; EC=4.2.1.11; (445 aa)
•    •• 0.922
estExt_fgenesh4_pm.C_LG_XII0191
enolase (EC-4.2.1.11) (431 aa)
•    •• 0.922
eugene3.00151093
RecName- Full=Enolase; EC=4.2.1.11; (445 aa)
•    •• 0.922
estExt_Genewise1_v1.C_LG_VII3984
phosphoenolpyruvate carboxykinase (ATP) (EC-4.1.1.49) (664 aa)
     •• 0.913
estExt_fgenesh4_pg.C_LG_II0983
phosphoenolpyruvate carboxykinase (ATP) (EC-4.1.1.49) (667 aa)
     •• 0.912
eugene3.00400106
RecName- Full=Nucleoside diphosphate kinase; EC=2.7.4.6; (149 aa)
     •• 0.909
estExt_fgenesh4_pg.C_LG_XII0928
adenylate kinase (EC-2.7.4.3) (246 aa)
     •• 0.909
gw1.VIII.102.1
hypothetical protein (223 aa)
     •• 0.908
gw1.V.2541.1
hypothetical protein (1081 aa)
     •• 0.908

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query181
PLN02461511 PLN02461, PLN02461, Probable pyruvate kinase 1e-109
PLN02765526 PLN02765, PLN02765, pyruvate kinase 1e-49
cd00288480 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): La 7e-49
PTZ00066513 PTZ00066, PTZ00066, pyruvate kinase; Provisional 9e-34
TIGR01064473 TIGR01064, pyruv_kin, pyruvate kinase 4e-30
COG0469477 COG0469, PykF, Pyruvate kinase [Carbohydrate trans 3e-27
PRK05826465 PRK05826, PRK05826, pyruvate kinase; Provisional 1e-26
PTZ00300454 PTZ00300, PTZ00300, pyruvate kinase; Provisional 3e-25
PRK06354 590 PRK06354, PRK06354, pyruvate kinase; Provisional 3e-25
pfam02887117 pfam02887, PK_C, Pyruvate kinase, alpha/beta domai 5e-24
PRK09206470 PRK09206, PRK09206, pyruvate kinase; Provisional 1e-17
PRK06247476 PRK06247, PRK06247, pyruvate kinase; Provisional 8e-16
pfam00224348 pfam00224, PK, Pyruvate kinase, barrel domain 9e-10
PLN02623581 PLN02623, PLN02623, pyruvate kinase 2e-09
PLN02762509 PLN02762, PLN02762, pyruvate kinase complex alpha 3e-07
>gnl|CDD|215255 PLN02461, PLN02461, Probable pyruvate kinase Back     alignment and domain information 
 Score =  321 bits (826), Expect = e-109
 Identities = 132/181 (72%), Positives = 158/181 (87%)

Query: 1   MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRT 60
           MLSGETAAGAYPE+AV+TMARIC EAE  ++YG L K+IM +AP+PMSPLESLASSAVRT
Sbjct: 331 MLSGETAAGAYPELAVKTMARICREAEASLDYGALFKEIMRSAPLPMSPLESLASSAVRT 390

Query: 61  ANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIF 120
           AN +KA+LI+VLTRGGTTA++V+KYRP++PILSV+VPEI TDS  WSCSDEAPA HSLI+
Sbjct: 391 ANKVKASLIVVLTRGGTTARLVAKYRPAVPILSVVVPEITTDSFDWSCSDEAPARHSLIY 450

Query: 121 RGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAGDSVVALHRMHIASVLKILVV 180
           RGL+PVL  GSA+A+D ESTEE +E A++HA  KGLC+ GDSVVALHR+  ASV+KIL V
Sbjct: 451 RGLIPVLAEGSAKATDSESTEEILEAAIEHAKKKGLCKPGDSVVALHRIGGASVIKILTV 510

Query: 181 N 181
            
Sbjct: 511 K 511

Length = 511
>gnl|CDD|215409 PLN02765, PLN02765, pyruvate kinase Back     alignment and domain information
>gnl|CDD|238178 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors Back     alignment and domain information
>gnl|CDD|173361 PTZ00066, PTZ00066, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|233257 TIGR01064, pyruv_kin, pyruvate kinase Back     alignment and domain information
>gnl|CDD|223545 COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235619 PRK05826, PRK05826, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|140321 PTZ00300, PTZ00300, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|235784 PRK06354, PRK06354, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|217269 pfam02887, PK_C, Pyruvate kinase, alpha/beta domain Back     alignment and domain information
>gnl|CDD|181699 PRK09206, PRK09206, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|180487 PRK06247, PRK06247, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|215802 pfam00224, PK, Pyruvate kinase, barrel domain Back     alignment and domain information
>gnl|CDD|215334 PLN02623, PLN02623, pyruvate kinase Back     alignment and domain information
>gnl|CDD|215407 PLN02762, PLN02762, pyruvate kinase complex alpha subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 181
PLN02461511 Probable pyruvate kinase 100.0
PLN02765526 pyruvate kinase 100.0
PTZ00066513 pyruvate kinase; Provisional 100.0
PTZ00300454 pyruvate kinase; Provisional 100.0
PLN02762509 pyruvate kinase complex alpha subunit 100.0
PRK06247476 pyruvate kinase; Provisional 100.0
PRK09206470 pyruvate kinase; Provisional 100.0
PRK06354 590 pyruvate kinase; Provisional 100.0
cd00288480 Pyruvate_Kinase Pyruvate kinase (PK): Large allost 100.0
COG0469477 PykF Pyruvate kinase [Carbohydrate transport and m 100.0
TIGR01064473 pyruv_kin pyruvate kinase. This enzyme is a homote 100.0
PRK05826465 pyruvate kinase; Provisional 100.0
PLN02623581 pyruvate kinase 100.0
KOG2323501 consensus Pyruvate kinase [Carbohydrate transport 100.0
PF02887117 PK_C: Pyruvate kinase, alpha/beta domain; InterPro 100.0
COG1751186 Uncharacterized conserved protein [Function unknow 89.65
>PLN02461 Probable pyruvate kinase Back     alignment and domain information 
Probab=100.00  E-value=1e-46  Score=337.16  Aligned_cols=181  Identities=73%  Similarity=1.099  Sum_probs=157.9

Q ss_pred             CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539            1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK   80 (181)
Q Consensus         1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~   80 (181)
                      |||||||.|+||+|||++|++||++||+.++|...|.........+.+..+++|.+|+++|+++++++||+||.||+||+
T Consensus       331 MLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIiv~T~sG~tA~  410 (511)
T PLN02461        331 MLSGETAAGAYPELAVKTMARICREAEASLDYGALFKEIMRSAPLPMSPLESLASSAVRTANKVKASLIVVLTRGGTTAR  410 (511)
T ss_pred             EEechhcCCCCHHHHHHHHHHHHHHHHhccchhhhhhhhcccccccCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHH
Confidence            99999999999999999999999999997655444433211111133567999999999999999999999999999999


Q ss_pred             HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539           81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG  160 (181)
Q Consensus        81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G  160 (181)
                      ++|||||.|||||+..|..+|+.++|+|++++++|||+|+|||+|++.+......|..+.+++++.+++++++.|++++|
T Consensus       411 ~iSk~RP~~pIia~t~~~~~~~~~~w~~~~~~~ar~l~L~~GV~P~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G  490 (511)
T PLN02461        411 LVAKYRPAVPILSVVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVLAEGSAKATDSESTEEILEAAIEHAKKKGLCKPG  490 (511)
T ss_pred             HHHhhCCCCCEEEEecCcccccccccccCCHHHhhhhheecceEEEEecccccccccCCHHHHHHHHHHHHHHcCCCCCc
Confidence            99999999999999777778889999999999999999999999998765322334568899999999999999999999


Q ss_pred             CEEEEEeecCCCcEEEEEEeC
Q 038539          161 DSVVALHRMHIASVLKILVVN  181 (181)
Q Consensus       161 d~vvvv~g~g~tn~i~i~~v~  181 (181)
                      |.||+++|.|.+|+++|++++
T Consensus       491 d~vvvv~~~g~tn~i~v~~v~  511 (511)
T PLN02461        491 DSVVALHRIGGASVIKILTVK  511 (511)
T ss_pred             CEEEEEecCCCCcEEEEEEeC
Confidence            999999999999999999875

>PLN02765 pyruvate kinase Back     alignment and domain information
>PTZ00066 pyruvate kinase; Provisional Back     alignment and domain information
>PTZ00300 pyruvate kinase; Provisional Back     alignment and domain information
>PLN02762 pyruvate kinase complex alpha subunit Back     alignment and domain information
>PRK06247 pyruvate kinase; Provisional Back     alignment and domain information
>PRK09206 pyruvate kinase; Provisional Back     alignment and domain information
>PRK06354 pyruvate kinase; Provisional Back     alignment and domain information
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors Back     alignment and domain information
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01064 pyruv_kin pyruvate kinase Back     alignment and domain information
>PRK05826 pyruvate kinase; Provisional Back     alignment and domain information
>PLN02623 pyruvate kinase Back     alignment and domain information
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2 Back     alignment and domain information
>COG1751 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query181
3eoe_A511 Crystal Structure Of Pyruvate Kinase From Toxoplasm 2e-24
3khd_A520 Crystal Structure Of Pff1300w. Length = 520 5e-21
3qv9_A499 Crystal Structure Of Trypanosoma Cruzi Pyruvate Kin 6e-21
3pp7_A498 Crystal Structure Of Leishmania Mexicana Pyruvate K 2e-19
1pkl_A499 The Structure Of Leishmania Pyruvate Kinase Length 2e-19
4drs_A526 Crystal Structure Of Cryptosporidium Parvum Pyruvat 1e-18
3ma8_A534 Crystal Structure Of Cgd1_2040, A Pyruvate Kinase F 1e-18
3e0v_A539 Crystal Structure Of Pyruvate Kinase From Leishmani 3e-18
3bjf_A518 Pyruvate Kinase M2 Is A Phosphotyrosine Binding Pro 1e-16
4g1n_A518 Pkm2 In Complex With An Activator Length = 518 1e-16
3u2z_A533 Activator-Bound Structure Of Human Pyruvate Kinase 1e-16
3bjt_A530 Pyruvate Kinase M2 Is A Phosphotyrosine Binding Pro 1e-16
4b2d_D548 Human Pkm2 With L-serine And Fbp Bound Length = 548 1e-16
1zjh_A548 Structure Of Human Muscle Pyruvate Kinase (Pkm2) Le 1e-16
1t5a_A567 Human Pyruvate Kinase M2 Length = 567 1e-16
3srd_A551 Human M2 Pyruvate Kinase In Complex With Fructose 1 1e-16
3gqy_A550 Activator-Bound Structure Of Human Pyruvate Kinase 1e-16
3g2g_A533 S437y Mutant Of Human Muscle Pyruvate Kinase, Isofo 2e-16
1a3w_A500 Pyruvate Kinase From Saccharomyces Cerevisiae Compl 2e-16
3srf_C551 Human M1 Pyruvate Kinase Length = 551 8e-15
1f3x_A530 S402p Mutant Of Rabbit Muscle Pyruvate Kinase Lengt 1e-14
2e28_A 587 Crystal Structure Analysis Of Pyruvate Kinase From 3e-14
4ima_A543 The Structure Of C436m-hlpyk In Complex With Citrat 7e-14
1aqf_A530 Pyruvate Kinase From Rabbit Muscle With Mg, K, And 8e-14
2g50_A530 The Location Of The Allosteric Amino Acid Binding S 1e-13
3n25_A531 The Structure Of Muscle Pyruvate Kinase In Complex 1e-13
2vgb_A528 Human Erythrocyte Pyruvate Kinase Length = 528 1e-13
4ip7_A543 Structure Of The S12d Variant Of Human Liver Pyruva 1e-13
2vgf_A528 Human Erythrocyte Pyruvate Kinase: T384m Mutant Len 1e-13
1pkm_A530 The Refined Three-Dimensional Structure Of Cat Musc 1e-13
2vgg_A528 Human Erythrocyte Pyruvate Kinase: R479h Mutant Len 1e-13
1f3w_A530 Recombinant Rabbit Muscle Pyruvate Kinase Length = 1e-13
1pkn_A530 Structure Of Rabbit Muscle Pyruvate Kinase Complexe 2e-13
2vgi_A528 Human Erythrocyte Pyruvate Kinase: R486w Mutant Len 4e-13
1e0u_A470 Structure R271l Mutant Of E. Coli Pyruvate Kinase L 6e-12
1e0t_A470 R292d Mutant Of E. Coli Pyruvate Kinase Length = 47 6e-12
1pky_A470 Pyruvate Kinase From E. Coli In The T-State Length 6e-12
3t05_A 606 Crystal Structure Of S. Aureus Pyruvate Kinase Leng 1e-11
3qtg_A461 Crystal Structure Of Pyruvate Kinase From Pyrobacul 9e-05
>pdb|3EOE|A Chain A, Crystal Structure Of Pyruvate Kinase From Toxoplasma Gondii, 55.M00007 Length = 511 Back     alignment and structure 
Iteration: 1

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 102/185 (55%), Gaps = 24/185 (12%)
Query: 1   MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRT 60
           MLSGETA G +P I V+TMARIC EAE  ++Y  L + +    P P+S  E++A +AV T
Sbjct: 345 MLSGETANGEFPVITVETMARICYEAETCVDYPALYRAMCLAVPPPISTQEAVARAAVET 404
Query: 61  ANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIF 120
           A C+ AA+IL LT  G TA++++KYRP  PIL++              + E+   H  + 
Sbjct: 405 AECVNAAIILALTETGQTARLIAKYRPMQPILAL-------------SASESTIKHLQVI 451
Query: 121 RGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAGDSVVALHRMH-----IASVL 175
           RG+       + +    + T+  I  A+  A  + L   G+S+VA+H M       +++L
Sbjct: 452 RGVT------TMQVPSFQGTDHVIRNAIVVAKERELVTEGESIVAVHGMKEEVAGSSNLL 505
Query: 176 KILVV 180
           K+L V
Sbjct: 506 KVLTV 510
>pdb|3KHD|A Chain A, Crystal Structure Of Pff1300w. Length = 520 Back     alignment and structure
>pdb|3QV9|A Chain A, Crystal Structure Of Trypanosoma Cruzi Pyruvate Kinase(Tcpyk)in Complex With Ponceau S. Length = 499 Back     alignment and structure
>pdb|3PP7|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase In Complex With The Drug Suramin, An Inhibitor Of Glycolysis. Length = 498 Back     alignment and structure
>pdb|1PKL|A Chain A, The Structure Of Leishmania Pyruvate Kinase Length = 499 Back     alignment and structure
>pdb|4DRS|A Chain A, Crystal Structure Of Cryptosporidium Parvum Pyruvate Kinase Length = 526 Back     alignment and structure
>pdb|3MA8|A Chain A, Crystal Structure Of Cgd1_2040, A Pyruvate Kinase From Cryptosporidium Parvum Length = 534 Back     alignment and structure
>pdb|3E0V|A Chain A, Crystal Structure Of Pyruvate Kinase From Leishmania Mexicana In Complex With Sulphate Ions Length = 539 Back     alignment and structure
>pdb|3BJF|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein Length = 518 Back     alignment and structure
>pdb|4G1N|A Chain A, Pkm2 In Complex With An Activator Length = 518 Back     alignment and structure
>pdb|3U2Z|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2 Length = 533 Back     alignment and structure
>pdb|3BJT|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein Length = 530 Back     alignment and structure
>pdb|4B2D|D Chain D, Human Pkm2 With L-serine And Fbp Bound Length = 548 Back     alignment and structure
>pdb|1ZJH|A Chain A, Structure Of Human Muscle Pyruvate Kinase (Pkm2) Length = 548 Back     alignment and structure
>pdb|1T5A|A Chain A, Human Pyruvate Kinase M2 Length = 567 Back     alignment and structure
>pdb|3SRD|A Chain A, Human M2 Pyruvate Kinase In Complex With Fructose 1-6 Bisphosphate And Oxalate. Length = 551 Back     alignment and structure
>pdb|3GQY|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2 Length = 550 Back     alignment and structure
>pdb|3G2G|A Chain A, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2 Length = 533 Back     alignment and structure
>pdb|1A3W|A Chain A, Pyruvate Kinase From Saccharomyces Cerevisiae Complexed With Fbp, Pg, Mn2+ And K+ Length = 500 Back     alignment and structure
>pdb|3SRF|C Chain C, Human M1 Pyruvate Kinase Length = 551 Back     alignment and structure
>pdb|1F3X|A Chain A, S402p Mutant Of Rabbit Muscle Pyruvate Kinase Length = 530 Back     alignment and structure
>pdb|2E28|A Chain A, Crystal Structure Analysis Of Pyruvate Kinase From Bacillus Stearothermophilus Length = 587 Back     alignment and structure
>pdb|4IMA|A Chain A, The Structure Of C436m-hlpyk In Complex With Citrate/mn/atp/fru-1,6-bp Length = 543 Back     alignment and structure
>pdb|1AQF|A Chain A, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L- Phospholactate Length = 530 Back     alignment and structure
>pdb|2G50|A Chain A, The Location Of The Allosteric Amino Acid Binding Site Of Muscle Pyruvate Kinase. Length = 530 Back     alignment and structure
>pdb|3N25|A Chain A, The Structure Of Muscle Pyruvate Kinase In Complex With Proline, Pyruvate, And Mn2+ Length = 531 Back     alignment and structure
>pdb|2VGB|A Chain A, Human Erythrocyte Pyruvate Kinase Length = 528 Back     alignment and structure
>pdb|4IP7|A Chain A, Structure Of The S12d Variant Of Human Liver Pyruvate Kinase In Complex With Citrate And Fbp. Length = 543 Back     alignment and structure
>pdb|2VGF|A Chain A, Human Erythrocyte Pyruvate Kinase: T384m Mutant Length = 528 Back     alignment and structure
>pdb|1PKM|A Chain A, The Refined Three-Dimensional Structure Of Cat Muscle (M1) Pyruvate Kinase, At A Resolution Of 2.6 Angstroms Length = 530 Back     alignment and structure
>pdb|2VGG|A Chain A, Human Erythrocyte Pyruvate Kinase: R479h Mutant Length = 528 Back     alignment and structure
>pdb|1F3W|A Chain A, Recombinant Rabbit Muscle Pyruvate Kinase Length = 530 Back     alignment and structure
>pdb|1PKN|A Chain A, Structure Of Rabbit Muscle Pyruvate Kinase Complexed With Mn2+, K+, And Pyruvate Length = 530 Back     alignment and structure
>pdb|2VGI|A Chain A, Human Erythrocyte Pyruvate Kinase: R486w Mutant Length = 528 Back     alignment and structure
>pdb|1E0U|A Chain A, Structure R271l Mutant Of E. Coli Pyruvate Kinase Length = 470 Back     alignment and structure
>pdb|1E0T|A Chain A, R292d Mutant Of E. Coli Pyruvate Kinase Length = 470 Back     alignment and structure
>pdb|1PKY|A Chain A, Pyruvate Kinase From E. Coli In The T-State Length = 470 Back     alignment and structure
>pdb|3T05|A Chain A, Crystal Structure Of S. Aureus Pyruvate Kinase Length = 606 Back     alignment and structure
>pdb|3QTG|A Chain A, Crystal Structure Of Pyruvate Kinase From Pyrobaculum Aerophilum Length = 461 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query181
3hqn_D499 Pyruvate kinase, PK; TIM barrel, T-state enzyme, t 8e-54
1a3w_A500 Pyruvate kinase; allosteric regulation, tranferase 2e-53
3gr4_A550 Pyruvate kinase isozymes M1/M2; activator, acetyla 7e-52
3khd_A520 Pyruvate kinase; malaria, structural genomics, str 8e-52
3gg8_A511 Pyruvate kinase; malaria, genomics, proteomics, gl 1e-51
3ma8_A534 Pyruvate kinase; parasitology, pyruvate kiase, gly 3e-51
1e0t_A470 Pyruvate kinase, PK; phosphotransferase, glycolysi 5e-49
3t05_A 606 Pyruvate kinase, PK; tetramer, glycolysis, transfe 5e-45
2e28_A 587 Pyruvate kinase, PK; allosteric, transferase; 2.40 2e-42
3qtg_A461 Pyruvate kinase, PK; TIM barrel, glycolysis, trans 4e-28
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A* Length = 499 Back     alignment and structure
 Score =  177 bits (450), Expect = 8e-54
 Identities = 60/184 (32%), Positives = 91/184 (49%), Gaps = 18/184 (9%)

Query: 1   MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRT 60
           MLSGETA G YP   VQ MARICLEA++ +N       I +   +PMS  E++ SSAV +
Sbjct: 329 MLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMSADEAVCSSAVNS 388

Query: 61  ANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIF 120
               KA  ++VL+  G +A++V+KYRP+ PI+ V              +         I 
Sbjct: 389 VYETKAKAMVVLSNTGRSARLVAKYRPNCPIVCV-------------TTRLQTCRQLNIT 435

Query: 121 RGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAGDSVVALHRMHIAS----VLK 176
           +G+  V    + +   +E  E  +   ++ A +KG  + GD  V +H  H         +
Sbjct: 436 QGVESVFFD-ADKLGHDEGKEHRVAAGVEFAKSKGYVQTGDYCVVIHADHKVKGYANQTR 494

Query: 177 ILVV 180
           IL+V
Sbjct: 495 ILLV 498
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A Length = 500 Back     alignment and structure
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 1zjh_A 3g2g_A 1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A* 2vgg_A* ... Length = 550 Back     alignment and structure
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7} Length = 520 Back     alignment and structure
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A Length = 511 Back     alignment and structure
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase, magnesium, transferase, structural genomi structural genomics consortium; HET: CIT; 2.64A {Cryptosporidium parvum} Length = 534 Back     alignment and structure
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A Length = 470 Back     alignment and structure
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* Length = 606 Back     alignment and structure
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} Length = 587 Back     alignment and structure
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum} Length = 461 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query181
4drs_A526 Pyruvate kinase; glycolysis, allosteric EN transfe 100.0
3khd_A520 Pyruvate kinase; malaria, structural genomics, str 100.0
3gr4_A550 Pyruvate kinase isozymes M1/M2; activator, acetyla 100.0
3gg8_A511 Pyruvate kinase; malaria, genomics, proteomics, gl 100.0
3hqn_D499 Pyruvate kinase, PK; TIM barrel, T-state enzyme, t 100.0
1e0t_A470 Pyruvate kinase, PK; phosphotransferase, glycolysi 100.0
3t05_A 606 Pyruvate kinase, PK; tetramer, glycolysis, transfe 100.0
1a3w_A500 Pyruvate kinase; allosteric regulation, tranferase 100.0
2e28_A 587 Pyruvate kinase, PK; allosteric, transferase; 2.40 100.0
3qtg_A461 Pyruvate kinase, PK; TIM barrel, glycolysis, trans 100.0
1vp8_A201 Hypothetical protein AF0103; putative pyruvate kin 96.58
1t57_A206 Conserved protein MTH1675; structural genomics, FM 96.53
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A* Back     alignment and structure
Probab=100.00  E-value=5.4e-47  Score=339.39  Aligned_cols=161  Identities=37%  Similarity=0.534  Sum_probs=147.6

Q ss_pred             CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539            1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK   80 (181)
Q Consensus         1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~   80 (181)
                      |||||||.|+||+|||++|++||+++|+.++|...+.......+.+.+..++||.+|+++|++++|++||+||.||+||+
T Consensus       360 MLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~sG~tA~  439 (526)
T 4drs_A          360 MLSGETANGAFPFDAVNVMSRVCAQAETCIDYPVLYHAIHSSVPKPVAVPEAIACSAVESAHDVNAKLIITITETGNTAR  439 (526)
T ss_dssp             EESHHHHSCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHTTCSEEEEECSSSHHHH
T ss_pred             EEcchhhcccCHHHHHHHHHHHHHHHhhcccchhhhhhhhhccCCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCcHHHH
Confidence            99999999999999999999999999999888777776666666777899999999999999999999999999999999


Q ss_pred             HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539           81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG  160 (181)
Q Consensus        81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G  160 (181)
                      ++|||||.+||||+      |       ++++++|||+|+|||+|++++..      .+.|++++.++++++++|++++|
T Consensus       440 ~iSr~RP~~pI~a~------T-------~~~~~~r~l~L~wGV~p~~~~~~------~~~d~~i~~a~~~~~~~g~~~~G  500 (526)
T 4drs_A          440 LISKYRPSQTIIAC------T-------AKPEVARGLKIARGVKTYVLNSI------HHSEVVISNALALAKEESLIESG  500 (526)
T ss_dssp             HHHHTCCSSEEEEE------E-------SCHHHHHHGGGSTTEEEEECSCC------CCHHHHHHHHHHHHHHTTSCCTT
T ss_pred             HHHhhCCCCCEEEE------C-------CCHHHHHhhhccCCeEEEEeCCC------CCHHHHHHHHHHHHHHCCCCCCc
Confidence            99999999999999      6       99999999999999999999864      78999999999999999999999


Q ss_pred             CEEEEEeec-----CCCcEEEEEEe
Q 038539          161 DSVVALHRM-----HIASVLKILVV  180 (181)
Q Consensus       161 d~vvvv~g~-----g~tn~i~i~~v  180 (181)
                      |.||+++|+     |+||+|||++|
T Consensus       501 D~vVi~~G~p~g~~G~TN~lrv~~V  525 (526)
T 4drs_A          501 DFAIAVHGVKESCPGSCNLMKIVRC  525 (526)
T ss_dssp             CEEEEEC----------CCEEEEEC
T ss_pred             CEEEEEeccCCCCCCcceEEEEEEC
Confidence            999999998     89999999987
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7} Back     alignment and structure
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ... Back     alignment and structure
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A Back     alignment and structure
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A* Back     alignment and structure
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A Back     alignment and structure
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A* Back     alignment and structure
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A Back     alignment and structure
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} Back     alignment and structure
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum} Back     alignment and structure
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2 Back     alignment and structure
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 181
d1a3xa3134 c.49.1.1 (A:367-500) Pyruvate kinase, C-terminal d 3e-24
d1pkla3141 c.49.1.1 (A:358-498) Pyruvate kinase, C-terminal d 1e-23
d2vgba3134 c.49.1.1 (A:440-573) Pyruvate kinase, C-terminal d 6e-23
d2g50a3135 c.49.1.1 (A:396-530) Pyruvate kinase, C-terminal d 2e-19
d1e0ta3117 c.49.1.1 (A:354-470) Pyruvate kinase, C-terminal d 4e-13
d2g50a2282 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-t 2e-09
d1a3xa2265 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-ter 4e-09
d1e0ta2246 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-ter 4e-09
d1pkla2258 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-ter 3e-08
>d1a3xa3 c.49.1.1 (A:367-500) Pyruvate kinase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 134 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: PK C-terminal domain-like
family: Pyruvate kinase, C-terminal domain
domain: Pyruvate kinase, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.4 bits (224), Expect = 3e-24
 Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 17/146 (11%)

Query: 39  IMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPE 98
           +    P P S  E++A+SAV      KA  I+VL+  GTT ++VSKYRP+ PI+      
Sbjct: 2   MRNCTPKPTSTTETVAASAVAAVFEQKAKAIIVLSTSGTTPRLVSKYRPNCPII------ 55

Query: 99  IKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCR 158
                          A  S ++RG+ P +      +   +  E  I F ++ A   G+ +
Sbjct: 56  -------LVTRCPRAARFSHLYRGVFPFVFEKEPVSDWTDDVEARINFGIEKAKEFGILK 108

Query: 159 AGDSVVALHRMHIAS----VLKILVV 180
            GD+ V++      +     L++  V
Sbjct: 109 KGDTYVSIQGFKAGAGHSNTLQVSTV 134
>d1pkla3 c.49.1.1 (A:358-498) Pyruvate kinase, C-terminal domain {Leishmania mexicana [TaxId: 5665]} Length = 141 Back     information, alignment and structure
>d2g50a3 c.49.1.1 (A:396-530) Pyruvate kinase, C-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 135 Back     information, alignment and structure
>d1e0ta3 c.49.1.1 (A:354-470) Pyruvate kinase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 117 Back     information, alignment and structure
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 282 Back     information, alignment and structure
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 265 Back     information, alignment and structure
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 246 Back     information, alignment and structure
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} Length = 258 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query181
d2vgba3134 Pyruvate kinase, C-terminal domain {Human (Homo sa 100.0
d1pkla3141 Pyruvate kinase, C-terminal domain {Leishmania mex 100.0
d1a3xa3134 Pyruvate kinase, C-terminal domain {Baker's yeast 100.0
d2g50a3135 Pyruvate kinase, C-terminal domain {Rabbit (Orycto 100.0
d1e0ta3117 Pyruvate kinase, C-terminal domain {Escherichia co 100.0
d1vp8a_190 Hypothetical protein AF0103 {Archaeoglobus fulgidu 96.19
d1t57a_186 Hypothetical protein MTH1675 {Methanobacterium the 95.31
d1ys7a2121 Transcriptional regulatory protein PrrA, N-termina 87.67
d1a04a2138 Nitrate/nitrite response regulator (NarL), receive 82.92
>d1pkla3 c.49.1.1 (A:358-498) Pyruvate kinase, C-terminal domain {Leishmania mexicana [TaxId: 5665]} Back     information, alignment and structure
>d1a3xa3 c.49.1.1 (A:367-500) Pyruvate kinase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2g50a3 c.49.1.1 (A:396-530) Pyruvate kinase, C-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1e0ta3 c.49.1.1 (A:354-470) Pyruvate kinase, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure