Citrus Sinensis ID: 038544

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
MRNSQRTGVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN
Secondary Structure (PSIPRED)
cccccccccccccccccccEEccHHHHHHHHHHHHHHccccccccHHHHHHHccccccHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccEEEEEEHHHcccc
Coil and Loop (DISEMBL)
mrnsqrtgvrqynkselprlrwtpeLHKHFSQAVERlggkykaspKRILHMMNVKGLKLSHIKSHLQVN
Flexible Loop (DISEMBL)
mrnsqrtgvrqynkselprlrwtpeLHKHFSQAVERLGGKYKASPKRILHMMnvkglklshikshlqvn
Low Complexity Region (SEG)
MRNSQRTGVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN
Disordered region (IsUnstruct)
********************RWTPELHKHFSQAVERLGGKYKA**KRILHMMNVKGLKL**********
Disordered Region (DISOPRED)
********************RWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV*
Disordered Region (DISEMBL)
************NKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN
Disordered Region (DISPRO)
*******GVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHL***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRNSQRTGVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	69	2.2.26 [Sep-21-2011]
Q700D9	255	Putative Myb family trans	no	no	0.884	0.239	0.639	6e-18
Q9FJV5	276	Probable transcription fa	no	no	0.739	0.184	0.588	4e-12
Q9SAK5	358	Myb family transcription	no	no	0.724	0.139	0.64	6e-12
Q941I2	322	Probable transcription fa	no	no	0.739	0.158	0.549	2e-11
Q9C616	388	Probable transcription fa	no	no	0.739	0.131	0.568	3e-11
Q93WJ9	403	Transcription repressor K	no	no	0.739	0.126	0.568	3e-11
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.710	0.118	0.551	4e-11
Q0J235	532	Probable transcription fa	no	no	0.739	0.095	0.568	8e-11
Q9FFH0	386	Transcription activator G	no	no	0.710	0.126	0.58	7e-09
Q9LZJ8	426	Putative two-component re	no	no	0.724	0.117	0.518	6e-08

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 51/61 (83%)

Query: 8  GVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67
          GVR Y +S +PRLRWTPELH+ F  AV+ LGG+YKA+PK +L +M+VKGL +SH+KSHLQ
Sbjct: 14 GVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQ 73

Query: 68 V 68
          +
Sbjct: 74 M 74

Putative transcription factor.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 39/51 (76%)

Query: 18  PRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV 68
           PR+RWT  LH HF  AV+ LGG  +A+PK +L +MNVK L L+H+KSHLQ+
Sbjct: 106 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQM 156

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 38/50 (76%)

Query: 18 PRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67
          PRLRWT ELH+ F  AV +LGG  KA+PK I+ +M VKGL L H+KSHLQ
Sbjct: 35 PRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQ 84

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 39/51 (76%)

Query: 18  PRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV 68
           PR+RWT  LH HF  AV+ LGG  +A+PK +L +M+V+ L L+H+KSHLQ+
Sbjct: 165 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQM 215

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 38/51 (74%)

Query: 18  PRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV 68
           PR+RWT  LH  F  AVE LGG  +A+PK +L +M+VK L L+H+KSHLQ+
Sbjct: 214 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 264

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 38/51 (74%)

Query: 18  PRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV 68
           PR+RWT  LH  F  AVE LGG  +A+PK +L +M+VK L L+H+KSHLQ+
Sbjct: 220 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 270

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 38/49 (77%)

Query: 19  RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67
           R+RWTPELH+ F +AV +LGG  +A+PK +L ++N  GL + H+KSHLQ
Sbjct: 233 RMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQ 281

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 38/51 (74%)

Query: 18  PRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV 68
           PR+RWT  LH  F  AVE LGG  +A+PK +L +M+VK L L+H+KSHLQ+
Sbjct: 325 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 375

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FFH0|GLK2_ARATH Transcription activator GLK2 OS=Arabidopsis thaliana GN=GLK2 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query: 18  PRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67
           P++ WTPELH+ F QAVE+LG   KA P RIL +MNVK L   ++ SHLQ
Sbjct: 148 PKVDWTPELHRKFVQAVEQLGVD-KAVPSRILEIMNVKSLTRHNVASHLQ 196

Transcriptional activator that functions with GLK1 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZJ8|ARR20_ARATH Putative two-component response regulator ARR20 OS=Arabidopsis thaliana GN=ARR20 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 18  PRLRWTPELHKHFSQAVERLGGKYKASPKRILHMM----NVKGLKLSHIKSHLQ 67
           PR++WTPELH  F  AVE++G   KA PK IL  M    NV+GL  +++ SHLQ
Sbjct: 212 PRMQWTPELHHKFEVAVEKMGSLEKAFPKTILKYMQEELNVQGLTRNNVASHLQ 265

Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
147827062	237	hypothetical protein VITISV_032969 [Viti	0.985	0.286	0.808	7e-27
224082592	68	predicted protein [Populus trichocarpa]	0.985	1.0	0.779	1e-23
359485183	421	PREDICTED: uncharacterized protein LOC10	0.927	0.152	0.764	6e-23
255578695	68	hypothetical protein RCOM_0324560 [Ricin	0.971	0.985	0.731	5e-22
224066549	225	predicted protein [Populus trichocarpa]	0.985	0.302	0.720	7e-22
356569947	105	PREDICTED: putative Myb family transcrip	0.985	0.647	0.705	9e-21
356524189	228	PREDICTED: uncharacterized protein LOC10	0.985	0.298	0.691	1e-20
242093874	256	hypothetical protein SORBIDRAFT_10g02693	0.985	0.265	0.647	2e-19
413955083	253	putative MYB DNA-binding domain superfam	0.985	0.268	0.632	5e-19
226495485	256	myb-like DNA-binding domain, SHAQKYF cla	0.985	0.265	0.602	5e-18

>gi|147827062|emb|CAN70877.1| hypothetical protein VITISV_032969 [Vitis vinifera] gi|302143516|emb|CBI22077.3| unnamed protein product [Vitis vinifera]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 55/68 (80%), Positives = 63/68 (92%)

Query: 1  MRNSQRTGVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLS 60
          M+NSQRTGVRQYNKSE PRLRWTPELH HF + VERLGGKY+A+PKRIL MM+VKGLK+S
Sbjct: 1  MKNSQRTGVRQYNKSEFPRLRWTPELHDHFVEVVERLGGKYRATPKRILQMMSVKGLKIS 60

Query: 61 HIKSHLQV 68
          H+KSHLQ+
Sbjct: 61 HVKSHLQM 68

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082592|ref|XP_002306755.1| predicted protein [Populus trichocarpa] gi|222856204|gb|EEE93751.1| predicted protein [Populus trichocarpa]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/68 (77%), Positives = 61/68 (89%)

Query: 1  MRNSQRTGVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLS 60
          M+ S++ GVRQYNKSE PRLRWTPELH+HF +AVERLGGKYKA+P+RIL MM VK LK+S
Sbjct: 1  MKTSRKNGVRQYNKSEHPRLRWTPELHEHFVEAVERLGGKYKATPRRILQMMGVKELKIS 60

Query: 61 HIKSHLQV 68
          HIKSHLQV
Sbjct: 61 HIKSHLQV 68

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485183|ref|XP_003633228.1| PREDICTED: uncharacterized protein LOC100855381 [Vitis vinifera]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 59/68 (86%), Gaps = 4/68 (5%)

Query: 1  MRNSQRTGVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLS 60
          M+NSQRTGVRQYNKSE PRLRWTPELH HF + VERLG    A+PKRIL MM+VKGLK+S
Sbjct: 1  MKNSQRTGVRQYNKSEFPRLRWTPELHDHFVEVVERLG----ATPKRILQMMSVKGLKIS 56

Query: 61 HIKSHLQV 68
          H+KSHLQ+
Sbjct: 57 HVKSHLQM 64

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578695|ref|XP_002530207.1| hypothetical protein RCOM_0324560 [Ricinus communis] gi|223530283|gb|EEF32181.1| hypothetical protein RCOM_0324560 [Ricinus communis]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 58/67 (86%)

Query: 1  MRNSQRTGVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLS 60
          M++SQR G+RQYNKS+LPRLRWTPELH+ F +AVE LGGKYKA+PKRIL  M+VKGL + 
Sbjct: 1  MQSSQRNGIRQYNKSQLPRLRWTPELHQDFVKAVEELGGKYKATPKRILQKMSVKGLNIC 60

Query: 61 HIKSHLQ 67
           IKSHLQ
Sbjct: 61 QIKSHLQ 67

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066549|ref|XP_002302131.1| predicted protein [Populus trichocarpa] gi|222843857|gb|EEE81404.1| predicted protein [Populus trichocarpa]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 58/68 (85%)

Query: 1  MRNSQRTGVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLS 60
          M+ S+  G RQYNKSE PRLRWTP LH+HF +AVE LGGKYKA+PKRIL MM+VK L++S
Sbjct: 1  MKTSEANGARQYNKSEHPRLRWTPVLHEHFVEAVESLGGKYKATPKRILQMMSVKELRIS 60

Query: 61 HIKSHLQV 68
          HIKSHLQ+
Sbjct: 61 HIKSHLQM 68

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569947|ref|XP_003553155.1| PREDICTED: putative Myb family transcription factor At1g14600-like [Glycine max]

 Score =  103 bits (258), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 61/68 (89%)

Query: 1  MRNSQRTGVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLS 60
          M+NS++TGVR+Y+KSE PRLRWTPELH++F + VE LGGK KA+PK IL MM+VKGL++S
Sbjct: 1  MKNSKKTGVRKYHKSENPRLRWTPELHEYFVEVVEGLGGKNKATPKSILQMMHVKGLRIS 60

Query: 61 HIKSHLQV 68
          HIKSHLQ+
Sbjct: 61 HIKSHLQM 68

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524189|ref|XP_003530714.1| PREDICTED: uncharacterized protein LOC100817762 [Glycine max]

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 60/68 (88%)

Query: 1  MRNSQRTGVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLS 60
          M+NS++T  R+Y+KSE PRLRWTPELH++F + VE LGGK KA+PK ILHMM+VKGL++S
Sbjct: 1  MKNSKKTCARKYHKSENPRLRWTPELHEYFVEVVEGLGGKNKATPKSILHMMHVKGLRIS 60

Query: 61 HIKSHLQV 68
          HIKSHLQ+
Sbjct: 61 HIKSHLQM 68

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242093874|ref|XP_002437427.1| hypothetical protein SORBIDRAFT_10g026930 [Sorghum bicolor] gi|241915650|gb|EER88794.1| hypothetical protein SORBIDRAFT_10g026930 [Sorghum bicolor]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 57/68 (83%)

Query: 1  MRNSQRTGVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLS 60
          MR  +R GVRQYN+SE+PR+RWT ELH+ F +AVE LGG+ +A+PKRIL +M VKG+ +S
Sbjct: 1  MRGFERKGVRQYNRSEVPRMRWTEELHRQFVEAVECLGGQDEATPKRILQLMGVKGVSIS 60

Query: 61 HIKSHLQV 68
          HIKSHLQ+
Sbjct: 61 HIKSHLQM 68

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413955083|gb|AFW87732.1| putative MYB DNA-binding domain superfamily protein [Zea mays]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 56/68 (82%)

Query: 1  MRNSQRTGVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLS 60
          MR  +R GVRQYN+SE+PR+RWT ELH+ F +AVE LGG+ +A+PKRIL +M  KG+ +S
Sbjct: 1  MRGFERKGVRQYNRSEVPRMRWTEELHRQFVEAVECLGGQDEATPKRILQLMGAKGVSIS 60

Query: 61 HIKSHLQV 68
          HIKSHLQ+
Sbjct: 61 HIKSHLQM 68

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226495485|ref|NP_001147627.1| myb-like DNA-binding domain, SHAQKYF class family protein [Zea mays] gi|195612650|gb|ACG28155.1| myb-like DNA-binding domain, SHAQKYF class family protein [Zea mays]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 55/68 (80%)

Query: 1  MRNSQRTGVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLS 60
          MR  +R GVRQYN+SE+PR+RWT +LH+ F  AVE LGG+ +A+PK+IL +M VKG+ + 
Sbjct: 1  MRGFERKGVRQYNRSEVPRMRWTEQLHRQFVLAVECLGGQDEATPKQILQLMGVKGVSIC 60

Query: 61 HIKSHLQV 68
          HIKSHLQ+
Sbjct: 61 HIKSHLQM 68

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
TAIR|locus:2204518	255	AT1G14600 "AT1G14600" [Arabido	0.884	0.239	0.639	7.5e-18
TAIR|locus:2063141	410	AT2G40260 "AT2G40260" [Arabido	0.971	0.163	0.617	9.3e-18
TAIR|locus:2042927	340	AT2G38300 "AT2G38300" [Arabido	0.956	0.194	0.560	2.3e-17
TAIR|locus:2041539	255	AT2G42660 "AT2G42660" [Arabido	0.869	0.235	0.616	4.1e-17
TAIR|locus:2041145	256	AT2G02060 [Arabidopsis thalian	0.884	0.238	0.622	4.1e-17
TAIR|locus:2125771	166	AT4G04580 "AT4G04580" [Arabido	0.869	0.361	0.516	5.6e-13
TAIR|locus:2163852	276	ATS "AT5G42630" [Arabidopsis t	0.927	0.231	0.484	9.6e-13
TAIR|locus:2087740	235	AT3G12730 [Arabidopsis thalian	0.724	0.212	0.64	1.5e-12
TAIR|locus:2119425	295	UNE16 "unfertilized embryo sac	0.724	0.169	0.64	5.1e-12
TAIR|locus:2093726	298	AT3G24120 [Arabidopsis thalian	0.724	0.167	0.64	5.4e-12

TAIR|locus:2204518 AT1G14600 "AT1G14600" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 39/61 (63%), Positives = 51/61 (83%)

Query:     8 GVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67
             GVR Y +S +PRLRWTPELH+ F  AV+ LGG+YKA+PK +L +M+VKGL +SH+KSHLQ
Sbjct:    14 GVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQ 73

Query:    68 V 68
             +
Sbjct:    74 M 74

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2063141 AT2G40260 "AT2G40260" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 9.3e-18, P = 9.3e-18
 Identities = 42/68 (61%), Positives = 54/68 (79%)

Query:     2 RNSQRTG-VRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLS 60
             +N +  G VR YN+S+ PRLRWTPELH  F QAVERLGG  +A+PK +L +MNVKGL ++
Sbjct:    66 QNKKNGGSVRPYNRSKTPRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIA 125

Query:    61 HIKSHLQV 68
             H+KSHLQ+
Sbjct:   126 HVKSHLQM 133

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2042927 AT2G38300 "AT2G38300" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 37/66 (56%), Positives = 54/66 (81%)

Query:     3 NSQRTGVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHI 62
             + ++T VR Y +S++PRLRWTP+LH  F +AVERLGG+ +A+PK +  MMN+KGL ++H+
Sbjct:    40 SDKKTKVRPYVRSKVPRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHV 99

Query:    63 KSHLQV 68
             KSHLQ+
Sbjct:   100 KSHLQM 105

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2041539 AT2G42660 "AT2G42660" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 37/60 (61%), Positives = 50/60 (83%)

Query:     9 VRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV 68
             VRQY +S +PRLRWTP+LH  F +AV+RLGG  +A+PK +L MMN+KGL ++H+KSHLQ+
Sbjct:    42 VRQYIRSNMPRLRWTPDLHLSFVRAVQRLGGPDRATPKLVLEMMNLKGLSIAHVKSHLQM 101

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2041145 AT2G02060 [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 38/61 (62%), Positives = 51/61 (83%)

Query:     8 GVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67
             GVR Y +S +PRLRWTP+LH+ F  AVE LGG+++A+PK +L MM+VKGL +SH+KSHLQ
Sbjct:    20 GVRPYVRSPVPRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQ 79

Query:    68 V 68
             +
Sbjct:    80 M 80

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2125771 AT4G04580 "AT4G04580" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 31/60 (51%), Positives = 44/60 (73%)

Query:     9 VRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV 68
             VR Y +S+ PR+ WT +L   F Q +E+LGG+  A+PKRIL +M V+ L +SH+KSHLQ+
Sbjct:     6 VRSYIRSDNPRMHWTDDLDIRFIQVIEKLGGEESATPKRILSLMGVRDLTISHVKSHLQM 65

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2163852 ATS "AT5G42630" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 9.6e-13, P = 9.6e-13
 Identities = 32/66 (48%), Positives = 47/66 (71%)

Query:     3 NSQRTGVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHI 62
             +S   G+++  ++  PR+RWT  LH HF  AV+ LGG  +A+PK +L +MNVK L L+H+
Sbjct:    93 SSSMVGLKRSIRA--PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHV 150

Query:    63 KSHLQV 68
             KSHLQ+
Sbjct:   151 KSHLQM 156

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP;TAS

GO:0048481 "ovule development" evidence=IMP

GO:0080060 "integument development" evidence=IGI;IMP

GO:0005618 "cell wall" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

TAIR|locus:2087740 AT3G12730 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 32/50 (64%), Positives = 37/50 (74%)

Query:    18 PRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67
             PRLRWT ELH+ F  AV  LGG  KA+PK I+ +M VKGL L H+KSHLQ
Sbjct:    24 PRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQ 73

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2119425 UNE16 "unfertilized embryo sac 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 5.1e-12, P = 5.1e-12
 Identities = 32/50 (64%), Positives = 37/50 (74%)

Query:    18 PRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67
             PRLRWT ELH+ F  AV +LGG  KA+PK I+  M VKGL L H+KSHLQ
Sbjct:    38 PRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 87

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

TAIR|locus:2093726 AT3G24120 [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 5.4e-12, P = 5.4e-12
 Identities = 32/50 (64%), Positives = 37/50 (74%)

Query:    18 PRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67
             PRLRWT ELH+ F  AV +LGG  KA+PK I+  M VKGL L H+KSHLQ
Sbjct:    42 PRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 91

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018856001 SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (90 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	69
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	3e-16
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	3e-10
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	0.003

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 64.7 bits (158), Expect = 3e-16
 Identities = 27/51 (52%), Positives = 34/51 (66%)

Query: 18 PRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV 68
          PR+ WT +LH  F QAV++LGG   A+PKRIL +M V GL    + SHLQ 
Sbjct: 2  PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQK 52

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 53.2 bits (127), Expect = 3e-10
 Identities = 26/49 (53%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 19  RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67
           ++ WTPELH+ F  AVE+LG + KA P RIL +M V+ L   +I SHLQ
Sbjct: 237 KVDWTPELHRRFVHAVEQLGVE-KAFPSRILELMGVQCLTRHNIASHLQ 284

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 31.7 bits (73), Expect = 0.003
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 5/49 (10%)

Query: 19 RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67
          R  WTPE  +   +AV++ G     +  +I   +  +       K+   
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNG---NWSKIAKHLPGRTDN--QCKNRWN 44

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	69
PLN03162	526	golden-2 like transcription factor; Provisional	99.94
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.94
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	98.75
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	97.17
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	97.14
smart00426	68	TEA TEA domain.	97.01
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	95.0
PF01285	431	TEA: TEA/ATTS domain family; InterPro: IPR000818 T	94.39
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	91.9
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	91.59
PLN03212	249	Transcription repressor MYB5; Provisional	90.15
KOG3841	455	consensus TEF-1 and related transcription factor,	88.31
PLN03091	459	hypothetical protein; Provisional	86.77
PLN03212	249	Transcription repressor MYB5; Provisional	83.92
PLN03091	459	hypothetical protein; Provisional	82.63

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.94  E-value=2.9e-27  Score=181.23  Aligned_cols=55  Identities=47%  Similarity=0.720  Sum_probs=53.1

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544           14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN   69 (69)
Q Consensus        14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy   69 (69)
                      ..||+|++||+|||++||+||++||. ++|+||+||++|+|+|||++|||||||||
T Consensus       232 g~KKpRLrWTpELH~rFVeAV~qLG~-dKATPK~ILelMnV~GLTRenVKSHLQKY  286 (526)
T PLN03162        232 GKKKAKVDWTPELHRRFVHAVEQLGV-EKAFPSRILELMGVQCLTRHNIASHLQKY  286 (526)
T ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCc-CccchHHHHHHcCCCCcCHHHHHHHHHHH
Confidence            47899999999999999999999995 89999999999999999999999999998

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.94  E-value=5.4e-27  Score=137.47  Aligned_cols=53  Identities=51%  Similarity=0.814  Sum_probs=51.2

Q ss_pred             CCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544           17 LPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN   69 (69)
Q Consensus        17 k~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy   69 (69)
                      |+|+.||+|+|.+|++||+.||+.+.|+|+.|+++|++++||+.||+||||||
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy   53 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKY   53 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            68999999999999999999998679999999999999999999999999998

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=98.75  E-value=1.6e-08  Score=55.84  Aligned_cols=47  Identities=28%  Similarity=0.343  Sum_probs=40.7

Q ss_pred             cccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544           19 RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN   69 (69)
Q Consensus        19 R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy   69 (69)
                      |..||+|.+..|++||..+|..   .++.|.+.|+ .+-|..+|++|.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~-~~Rt~~qc~~~~~~~   47 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMP-GGRTAKQCRSRYQNL   47 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHS-SSSTHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcC-CCCCHHHHHHHHHhh
Confidence            5689999999999999999963   6999999999 788999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=97.17  E-value=0.0018  Score=33.40  Aligned_cols=43  Identities=16%  Similarity=0.282  Sum_probs=36.3

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544           20 LRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ   67 (69)
Q Consensus        20 ~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ   67 (69)
                      -.||++....|+.++.++|-   ..+..|.+.|+  +-|..+|+.+..
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~---~~w~~Ia~~~~--~rt~~~~~~~~~   44 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGK---NNWEKIAKELP--GRTAEQCRERWN   44 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcC--CCCHHHHHHHHH
Confidence            46999999999999999992   23899999886  679999988754

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=97.14  E-value=0.0019  Score=33.02  Aligned_cols=43  Identities=16%  Similarity=0.234  Sum_probs=36.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544           21 RWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV   68 (69)
Q Consensus        21 ~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK   68 (69)
                      .||+|....|+.++..+|.   ..+..|.+.|+-  -|..+|+++.+.
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~~--rs~~~~~~~~~~   43 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELPG--RTPKQCRERWRN   43 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcCC--CCHHHHHHHHHH
Confidence            4999999999999999993   248999999854  699999988754

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00426 TEA TEA domain

Probab=97.01  E-value=0.0017  Score=39.62  Aligned_cols=48  Identities=21%  Similarity=0.301  Sum_probs=31.0

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCcc----------------ChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544           20 LRWTPELHKHFSQAVERLGGKYKA----------------SPKRILHMMNVKGLKLSHIKSHLQV   68 (69)
Q Consensus        20 ~~WT~eLH~~Fv~Av~~LGg~~~A----------------~Pk~Il~~M~v~gLT~~~VkSHLQK   68 (69)
                      -+|.++|...|++|+..+--....                ....|...-| .--|+.||.||+|.
T Consensus         4 ~vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs~YI~~~tG-k~Rt~KQVsShIQv   67 (68)
T smart00426        4 GVWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQV   67 (68)
T ss_pred             CcCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHHHHHHHHhC-Cccchhhhcchhee
Confidence            379999999999999876421000                0112232223 22599999999995

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=95.00  E-value=0.097  Score=29.17  Aligned_cols=40  Identities=18%  Similarity=0.326  Sum_probs=32.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544           22 WTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ   67 (69)
Q Consensus        22 WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ   67 (69)
                      ||+|.-...+.+|...|.    .++.|.+.|+  .-|..+|+.+..
T Consensus         1 WT~eEd~~L~~~~~~~g~----~W~~Ia~~l~--~Rt~~~~~~r~~   40 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN----DWKKIAEHLG--NRTPKQCRNRWR   40 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-----HHHHHHHST--TS-HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc----CHHHHHHHHC--cCCHHHHHHHHH
Confidence            999999999999999985    4999999996  568999887754

...

>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids

Probab=94.39  E-value=0.031  Score=43.52  Aligned_cols=52  Identities=19%  Similarity=0.262  Sum_probs=28.9

Q ss_pred             CCCcccCCHHHHHHHHHHHHHhC---CC-----------CccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544           16 ELPRLRWTPELHKHFSQAVERLG---GK-----------YKASPKRILHMMNVKGLKLSHIKSHLQV   68 (69)
Q Consensus        16 kk~R~~WT~eLH~~Fv~Av~~LG---g~-----------~~A~Pk~Il~~M~v~gLT~~~VkSHLQK   68 (69)
                      ....-+|++++...|++|+..+-   ..           ..-.-..|...-| .--|+.||.||+|.
T Consensus        46 ~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg-~~rt~kqvsshiqv  111 (431)
T PF01285_consen   46 GDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTG-KTRTRKQVSSHIQV  111 (431)
T ss_dssp             GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS-----SHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhC-cccchhHHHHHHHH
Confidence            46788999999999999997663   11           1111123332333 23699999999993

The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=91.90  E-value=0.25  Score=39.03  Aligned_cols=48  Identities=19%  Similarity=0.200  Sum_probs=40.8

Q ss_pred             CCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544           16 ELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV   68 (69)
Q Consensus        16 kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK   68 (69)
                      +--...||.+.-..|++|++.+|.   -.|..|.+.||..  |.++++.|--|
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~---GNW~dIA~hIGtK--tkeeck~hy~k  116 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGF---GNWQDIADHIGTK--TKEECKEHYLK  116 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCC---CcHHHHHHHHccc--chHHHHHHHHH
Confidence            344678999999999999999995   3599999999954  99999999644

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=91.59  E-value=0.32  Score=28.98  Aligned_cols=47  Identities=19%  Similarity=0.343  Sum_probs=33.5

Q ss_pred             cCCHHHHHHHHHHHHHh---CCC------CccChHHHHHHcCC---CCCCHHHHHhhhc
Q 038544           21 RWTPELHKHFSQAVERL---GGK------YKASPKRILHMMNV---KGLKLSHIKSHLQ   67 (69)
Q Consensus        21 ~WT~eLH~~Fv~Av~~L---Gg~------~~A~Pk~Il~~M~v---~gLT~~~VkSHLQ   67 (69)
                      .||++..+.||+.+-+.   |..      .+.....|.+.++-   -.+|..||++|+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~   59 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWK   59 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence            59999999999988433   432      12345677777763   4478999999975

>PLN03212 Transcription repressor MYB5; Provisional

Probab=90.15  E-value=0.69  Score=34.19  Aligned_cols=46  Identities=11%  Similarity=0.030  Sum_probs=35.6

Q ss_pred             CCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHh
Q 038544           15 SELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKS   64 (69)
Q Consensus        15 ~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkS   64 (69)
                      ....|-.||+|.-..-+++|+.+|.   ..++.|.+.|+ ++-|..|++-
T Consensus        21 ~glKRg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~~g-~gRT~KQCRe   66 (249)
T PLN03212         21 MGMKRGPWTVEEDEILVSFIKKEGE---GRWRSLPKRAG-LLRCGKSCRL   66 (249)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCc---ccHHHHHHhhh-cCCCcchHHH
Confidence            3456788999999999999999995   35889988876 4556666554

>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]

Probab=88.31  E-value=0.66  Score=36.68  Aligned_cols=52  Identities=21%  Similarity=0.413  Sum_probs=33.4

Q ss_pred             CCcccCCHHHHHHHHHHHHHh---CCC-----Cc----cChHHHHHHcCC---CCCCHHHHHhhhcc
Q 038544           17 LPRLRWTPELHKHFSQAVERL---GGK-----YK----ASPKRILHMMNV---KGLKLSHIKSHLQV   68 (69)
Q Consensus        17 k~R~~WT~eLH~~Fv~Av~~L---Gg~-----~~----A~Pk~Il~~M~v---~gLT~~~VkSHLQK   68 (69)
                      -.--+|+++..+.|.||+..+   |..     |.    ..-.-|...++.   .--|+.||.||.|.
T Consensus        74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQV  140 (455)
T KOG3841|consen   74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV  140 (455)
T ss_pred             ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            456799999999999999775   211     00    011222222222   34699999999984

>PLN03091 hypothetical protein; Provisional

Probab=86.77  E-value=1.6  Score=34.76  Aligned_cols=46  Identities=13%  Similarity=0.192  Sum_probs=34.9

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHH
Q 038544           14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIK   63 (69)
Q Consensus        14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~Vk   63 (69)
                      +.+..+..||+|.-++.+++|..+|.   ..|+.|...|+ ++-|..|++
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~---~nWs~IAk~~g-~gRT~KQCR   54 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGH---GCWSSVPKQAG-LQRCGKSCR   54 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCc---CCHHHHhhhhc-cCcCcchHh
Confidence            34566778999999999999999995   36888888876 344554444

>PLN03212 Transcription repressor MYB5; Provisional

Probab=83.92  E-value=2.7  Score=31.13  Aligned_cols=48  Identities=19%  Similarity=0.140  Sum_probs=38.8

Q ss_pred             ccCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhh
Q 038544           12 YNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSH   65 (69)
Q Consensus        12 ~~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSH   65 (69)
                      +-.+.-.+-.||+|.-..-++++..+|..    +..|...|  ||-|-.+||.+
T Consensus        71 ~L~P~I~kgpWT~EED~lLlel~~~~GnK----Ws~IAk~L--pGRTDnqIKNR  118 (249)
T PLN03212         71 YLRPSVKRGGITSDEEDLILRLHRLLGNR----WSLIAGRI--PGRTDNEIKNY  118 (249)
T ss_pred             hhchhcccCCCChHHHHHHHHHHHhcccc----HHHHHhhc--CCCCHHHHHHH
Confidence            33455667789999999999999999963    88898866  88899999865

>PLN03091 hypothetical protein; Provisional

Probab=82.63  E-value=4.5  Score=32.35  Aligned_cols=47  Identities=17%  Similarity=0.170  Sum_probs=39.2

Q ss_pred             cCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhh
Q 038544           13 NKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSH   65 (69)
Q Consensus        13 ~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSH   65 (69)
                      -.+.-.+-.||+|.-...++.+..+|.    .+..|.+.|  ||-|-.+||.+
T Consensus        61 LdP~IkKgpWT~EED~lLLeL~k~~Gn----KWskIAk~L--PGRTDnqIKNR  107 (459)
T PLN03091         61 LRPDLKRGTFSQQEENLIIELHAVLGN----RWSQIAAQL--PGRTDNEIKNL  107 (459)
T ss_pred             cCCcccCCCCCHHHHHHHHHHHHHhCc----chHHHHHhc--CCCCHHHHHHH
Confidence            345555678999999999999999995    489999876  88999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	69
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		6e-07

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 18 PRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67
          PR+ WT ELH  F  AV+ LG + +A PK+IL +MNV  L   ++ SHLQ
Sbjct: 6  PRVLWTHELHNKFLAAVDHLGVE-RAVPKKILDLMNVDKLTRENVASHLQ 54

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	69
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	9e-15

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 60.7 bits (147), Expect = 9e-15
 Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 18 PRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67
          PR+ WT ELH  F  AV+ LG + +A PK+IL +MNV  L   ++ SHLQ
Sbjct: 6  PRVLWTHELHNKFLAAVDHLGVE-RAVPKKILDLMNVDKLTRENVASHLQ 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	69
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	100.0
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	98.57
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	98.21
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	98.08
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	97.97
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	97.76
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	97.62
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	97.62
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.61
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	97.59
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	97.56
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	97.53
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	97.48
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	97.4
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	97.33
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	97.32
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	97.27
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	97.12
2cjj_A	93	Radialis; plant development, DNA-binding protein,	96.98
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	96.93
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	96.88
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	96.84
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	96.79
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	96.7
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	96.65
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	96.64
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	96.48
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	96.46
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	96.4
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	96.37
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	95.33
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	96.19
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	96.17
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	96.14
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	96.12
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	96.1
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	96.01
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	95.91
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	95.8
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	95.8
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	95.76
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	95.05
2crg_A	70	Metastasis associated protein MTA3; transcription	94.68
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	94.18
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	93.59
1qgp_A	77	Protein (double stranded RNA adenosine deaminase);	82.56

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=100.00  E-value=4.7e-34  Score=170.65  Aligned_cols=55  Identities=45%  Similarity=0.701  Sum_probs=52.9

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544           14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN   69 (69)
Q Consensus        14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy   69 (69)
                      .++|+|++||+|||++||+||++||+ ++|+||.|+++|||+|||++||+||||||
T Consensus         2 ~~~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            2 AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            46899999999999999999999995 89999999999999999999999999998

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=98.57  E-value=2.8e-07  Score=55.65  Aligned_cols=60  Identities=13%  Similarity=0.096  Sum_probs=48.3

Q ss_pred             ccccccccccCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544            4 SQRTGVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN   69 (69)
Q Consensus         4 ~~~~~~r~~~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy   69 (69)
                      |+....+........+-.||+|.+..|++||+.+|+    .+..|.+.|+  +-|..||+.|-++|
T Consensus         3 sg~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~   62 (79)
T 2yus_A            3 SGSSGTLAKSKGASAGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRL   62 (79)
T ss_dssp             CSSSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred             CcccCccCCccccccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            444444455555566889999999999999999994    4999999986  57999999998875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.21  E-value=2e-06  Score=50.30  Aligned_cols=52  Identities=15%  Similarity=0.144  Sum_probs=43.0

Q ss_pred             CCCCcccCCHHHHHHHHHHHHHhCCCCc---cChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544           15 SELPRLRWTPELHKHFSQAVERLGGKYK---ASPKRILHMMNVKGLKLSHIKSHLQVN   69 (69)
Q Consensus        15 ~kk~R~~WT~eLH~~Fv~Av~~LGg~~~---A~Pk~Il~~M~v~gLT~~~VkSHLQKy   69 (69)
                      +...+-.||+|.+..|+++|..+|. +.   -.+..|.+.|  +|-|..||++|-|+|
T Consensus         4 p~~~~~~WT~eEd~~L~~~v~~~g~-~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~   58 (75)
T 2yum_A            4 GSSGNQLWTVEEQKKLEQLLIKYPP-EEVESRRWQKIADEL--GNRTAKQVASQVQKY   58 (75)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHSCC-CSCHHHHHHHHHHHH--SSSCHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-CCCCcccHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            3445668999999999999999994 22   4689999987  468999999998875

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.08  E-value=6.7e-06  Score=47.99  Aligned_cols=49  Identities=20%  Similarity=0.299  Sum_probs=41.8

Q ss_pred             CCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544           15 SELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN   69 (69)
Q Consensus        15 ~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy   69 (69)
                      +...+-.||+|.+..|+++|+.+|-    .+..|...|  ||-|..+|+.|.++|
T Consensus         5 p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~   53 (72)
T 2cu7_A            5 SSGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQY   53 (72)
T ss_dssp             CSSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHH
T ss_pred             CCcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHH
Confidence            3455778999999999999999996    599999976  678999999997654

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=97.97  E-value=2e-05  Score=44.59  Aligned_cols=49  Identities=14%  Similarity=0.081  Sum_probs=41.0

Q ss_pred             CCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544           16 ELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN   69 (69)
Q Consensus        16 kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy   69 (69)
                      .-.+-.||+|....+++||+.+|.   ..++.|.+.|  ++-|..|++.|-++|
T Consensus         5 ~~~~~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~r~~~~   53 (60)
T 1x41_A            5 SSGDPSWTAQEEMALLEAVMDCGF---GNWQDVANQM--CTKTKEECEKHYMKY   53 (60)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTCT---TCHHHHHHHH--TTSCHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCc---CcHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            345668999999999999999993   2499999998  578999999987654

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=97.76  E-value=8e-05  Score=44.35  Aligned_cols=62  Identities=10%  Similarity=0.132  Sum_probs=47.9

Q ss_pred             cccccccccCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544            5 QRTGVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV   68 (69)
Q Consensus         5 ~~~~~r~~~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK   68 (69)
                      ..+..|+..++...+-.||+|....|++||..+|......+.+|.+.|  ||-|..+|+.|-+.
T Consensus         4 ~~~~~~~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v--pGRT~~qcr~Ry~~   65 (73)
T 2cqr_A            4 GSSGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV--PSKSKEDCIARYKL   65 (73)
T ss_dssp             CSSSCCCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC--SSSCHHHHHHHHHH
T ss_pred             cccccccccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHH
Confidence            344556666677778889999999999999999942223577887766  68999999998653

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=97.62  E-value=0.00016  Score=51.74  Aligned_cols=56  Identities=18%  Similarity=0.174  Sum_probs=46.7

Q ss_pred             ccccccCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544            8 GVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN   69 (69)
Q Consensus         8 ~~r~~~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy   69 (69)
                      ..|......+..-.||+|.+..|++|+..+|- +   +..|.++++  +-|..||++|-++|
T Consensus       122 ~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGK-D---W~~IAk~Vg--TKT~~QcKnfY~~~  177 (235)
T 2iw5_B          122 PYRLPEVIQKCNARWTTEEQLLAVQAIRKYGR-D---FQAISDVIG--NKSVVQVKNFFVNY  177 (235)
T ss_dssp             GGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSS-C---HHHHHHHHS--SCCHHHHHHHHHHT
T ss_pred             cccCCCCCCccCCCCCHHHHHHHHHHHHHHCc-C---HHHHHHHcC--CCCHHHHHHHHHHH
Confidence            34555566778889999999999999999995 3   999999855  56999999998765

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=97.62  E-value=0.00018  Score=41.43  Aligned_cols=51  Identities=18%  Similarity=0.235  Sum_probs=43.0

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544           14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ   67 (69)
Q Consensus        14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ   67 (69)
                      .+++.+-.||+|.-...+++|+.+|.   ..+..|.+.|+..|-|..|++.+-.
T Consensus         5 ~~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~   55 (69)
T 1ity_A            5 HRARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWR   55 (69)
T ss_dssp             TCSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHH
Confidence            46678899999999999999999993   2599999999765889999887643

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.61  E-value=0.00014  Score=56.11  Aligned_cols=54  Identities=20%  Similarity=0.234  Sum_probs=45.9

Q ss_pred             ccccCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544           10 RQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN   69 (69)
Q Consensus        10 r~~~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy   69 (69)
                      |......+..-+||+|.|..|++|+..+|.    .+..|.+.++..  |..||++|-++|
T Consensus       371 r~~e~~~~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgTK--T~~Qvk~fy~~~  424 (482)
T 2xag_B          371 RLPEVIQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNK--SVVQVKNFFVNY  424 (482)
T ss_dssp             CCCCCCCCCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSSC--CHHHHHHHHHHT
T ss_pred             cCCccccccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCCC--CHHHHHHHHHHH
Confidence            444445567889999999999999999996    399999998876  999999999876

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=97.59  E-value=0.00016  Score=42.84  Aligned_cols=48  Identities=15%  Similarity=0.308  Sum_probs=40.0

Q ss_pred             CcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544           18 PRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV   68 (69)
Q Consensus        18 ~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK   68 (69)
                      ..-.||.|.+..|..|+..++......+.+|.+.|   |-|.++|+.|-++
T Consensus         7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l---gRt~~eV~~~y~~   54 (72)
T 2cqq_A            7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL---GRSVTDVTTKAKQ   54 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH---TSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh---CCCHHHHHHHHHH
Confidence            34579999999999999999863345688999998   4799999999764

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=97.56  E-value=0.0002  Score=40.26  Aligned_cols=47  Identities=15%  Similarity=0.149  Sum_probs=39.0

Q ss_pred             cccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544           19 RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN   69 (69)
Q Consensus        19 R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy   69 (69)
                      +-.||+|...++++||+.+|.   ..+..|.+.|+. +-|..|++.|-++|
T Consensus         9 ~~~WT~eED~~L~~~v~~~G~---~~W~~IA~~~~~-~Rt~~qcr~r~~~~   55 (58)
T 2elk_A            9 DENWGADEELLLIDACETLGL---GNWADIADYVGN-ARTKEECRDHYLKT   55 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTT---TCHHHHHHHHCS-SCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHHCC-CCCHHHHHHHHHHH
Confidence            456999999999999999993   249999999862 56999999987653

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=97.53  E-value=0.00034  Score=39.04  Aligned_cols=50  Identities=12%  Similarity=0.144  Sum_probs=41.6

Q ss_pred             CCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544           15 SELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN   69 (69)
Q Consensus        15 ~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy   69 (69)
                      +...+-.||+|....++++|..+|.   ..+..|.+.|  +|-|..|++.+-++|
T Consensus         4 p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~   53 (60)
T 2d9a_A            4 GSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRV   53 (60)
T ss_dssp             CCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHH
Confidence            4566789999999999999999993   2499999986  578999999876654

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.48  E-value=0.00062  Score=38.58  Aligned_cols=46  Identities=9%  Similarity=-0.030  Sum_probs=37.8

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhh
Q 038544           14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSH   65 (69)
Q Consensus        14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSH   65 (69)
                      +.++..-.||+|.|..|++|+..+|-    ....|...|  |+-|..+|..|
T Consensus         7 ~~r~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~l--~~rt~~~~v~~   52 (61)
T 2eqr_A            7 GDRQFMNVWTDHEKEIFKDKFIQHPK----NFGLIASYL--ERKSVPDCVLY   52 (61)
T ss_dssp             CCCSCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHHC--TTSCHHHHHHH
T ss_pred             cccccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHH
Confidence            34566789999999999999999994    388998775  57799988765

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=97.40  E-value=0.00061  Score=39.19  Aligned_cols=46  Identities=17%  Similarity=0.193  Sum_probs=39.1

Q ss_pred             CCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhh
Q 038544           17 LPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSH   65 (69)
Q Consensus        17 k~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSH   65 (69)
                      ..|-.||+|.-...+++|+.+|..   .++.|.+.+...|-|..|++-.
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~R   54 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVNRTAVMIKDR   54 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCC---chHHHHhhcCCCCCCHHHHHHH
Confidence            346679999999999999999942   4999999998889999998754

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=97.33  E-value=0.00061  Score=36.99  Aligned_cols=46  Identities=17%  Similarity=0.232  Sum_probs=38.9

Q ss_pred             cccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544           19 RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN   69 (69)
Q Consensus        19 R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy   69 (69)
                      +-.||+|....++++|+.+|.   ..+..|.+.|  +|-|..+++.+-+.|
T Consensus         3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~   48 (52)
T 1gvd_A            3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH   48 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHH
Confidence            567999999999999999995   2599999887  678999999876554

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=97.32  E-value=0.00043  Score=37.54  Aligned_cols=45  Identities=22%  Similarity=0.271  Sum_probs=38.4

Q ss_pred             cccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544           19 RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV   68 (69)
Q Consensus        19 R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK   68 (69)
                      +-.||+|....++++|+.+|.   ..+..|.+.|  +|-|..||+.+-++
T Consensus         3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~   47 (52)
T 1guu_A            3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQK   47 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHH
Confidence            568999999999999999995   3599999986  57899999987654

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=97.27  E-value=0.00075  Score=36.91  Aligned_cols=45  Identities=20%  Similarity=0.273  Sum_probs=38.3

Q ss_pred             cccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhh
Q 038544           19 RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHL   66 (69)
Q Consensus        19 R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHL   66 (69)
                      |-.||+|.....+++|+.+|.   ..+..|.+.|+..|-|..+++.+-
T Consensus         2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw   46 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRW   46 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHH
Confidence            568999999999999999994   259999999876688999988653

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.12  E-value=0.0018  Score=37.10  Aligned_cols=49  Identities=16%  Similarity=0.133  Sum_probs=40.6

Q ss_pred             CCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544           15 SELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV   68 (69)
Q Consensus        15 ~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK   68 (69)
                      +...+-.||+|....++++|..+|.   ..+..|...|+  |-|..|++.+-..
T Consensus         5 ~~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~   53 (70)
T 2dim_A            5 SSGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYE   53 (70)
T ss_dssp             SCSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHH
Confidence            4456778999999999999999993   25999999986  7899999887544

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=96.98  E-value=0.0016  Score=40.21  Aligned_cols=48  Identities=15%  Similarity=0.285  Sum_probs=39.0

Q ss_pred             cccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544           19 RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV   68 (69)
Q Consensus        19 R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK   68 (69)
                      .-.||+|....|++|+..+|......+.+|.+.+  ||-|..+|+.|-+.
T Consensus         8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v--pGRT~~q~k~ry~~   55 (93)
T 2cjj_A            8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAV--EGRTPEEVKKHYEI   55 (93)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS--TTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHH
Confidence            3469999999999999999842234588998887  58899999998653

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.93  E-value=0.002  Score=36.53  Aligned_cols=48  Identities=13%  Similarity=0.209  Sum_probs=39.8

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544           14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV   68 (69)
Q Consensus        14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK   68 (69)
                      .+...+-.||+|....++++++.+|.    .+..|.+++   |-|..+|+.|-+.
T Consensus         4 ~P~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~   51 (66)
T 2din_A            4 GSSGKKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEF   51 (66)
T ss_dssp             SSSSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHH
Confidence            34556778999999999999999995    599999955   4799999988654

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.88  E-value=0.0054  Score=34.98  Aligned_cols=46  Identities=17%  Similarity=0.207  Sum_probs=35.2

Q ss_pred             CCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhh
Q 038544           15 SELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSH   65 (69)
Q Consensus        15 ~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSH   65 (69)
                      +...+-.||+|.+..|.+|+...|- +   ...|...| |+.-|..+|..+
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~~-v~~Kt~~~~v~f   50 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGK-N---FFRIRKEL-LPNKETGELITF   50 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCS-C---HHHHHHHS-CTTSCHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCc-c---HHHHHHHH-cCCCcHHHHHHH
Confidence            4555679999999999999999995 2   78887632 455688887643

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=96.84  E-value=0.0035  Score=37.97  Aligned_cols=48  Identities=29%  Similarity=0.432  Sum_probs=40.3

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544           14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ   67 (69)
Q Consensus        14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ   67 (69)
                      .+.-.+-.||+|....++++|..+|.    .+..|.+.|  ||-|..+|+.|-.
T Consensus        51 ~p~~~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~   98 (105)
T 1gv2_A           51 NPEVKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAIKNHWN   98 (105)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSS----CHHHHHTTC--TTCCHHHHHHHHH
T ss_pred             CCcccccCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHH
Confidence            44556778999999999999999995    489998864  7899999998753

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=96.79  E-value=0.0048  Score=36.57  Aligned_cols=50  Identities=16%  Similarity=0.143  Sum_probs=40.0

Q ss_pred             ccccCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhh
Q 038544           10 RQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHL   66 (69)
Q Consensus        10 r~~~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHL   66 (69)
                      ..+..+.-.+-.||+|.-...++++..+|..    +..|.+.|   |-|..+|+.+-
T Consensus        14 ~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k----W~~IA~~l---gRt~~q~knRw   63 (73)
T 2llk_A           14 LYFQGDRNHVGKYTPEEIEKLKELRIKHGND----WATIGAAL---GRSASSVKDRC   63 (73)
T ss_dssp             -----CCCCCCSSCHHHHHHHHHHHHHHSSC----HHHHHHHH---TSCHHHHHHHH
T ss_pred             eeecCCCCCCCCCCHHHHHHHHHHHHHHCCC----HHHHHHHh---CCCHHHHHHHH
Confidence            3445567788899999999999999999952    99999999   78999998764

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=96.70  E-value=0.0048  Score=38.98  Aligned_cols=51  Identities=16%  Similarity=0.121  Sum_probs=41.8

Q ss_pred             cCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcC--CCCCCHHHHHhhh
Q 038544           13 NKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMN--VKGLKLSHIKSHL   66 (69)
Q Consensus        13 ~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~--v~gLT~~~VkSHL   66 (69)
                      ...++.+-.||+|.-...+++|+.+|.   -.++.|+..+.  .+|-|..+++.+-
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~RT~v~lKdrW   59 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADHRTYVDLKDKW   59 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTCCCHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCCCCHHHHHHHH
Confidence            346788999999999999999999995   24999999763  4889999988653

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=96.65  E-value=0.0057  Score=37.42  Aligned_cols=48  Identities=19%  Similarity=0.287  Sum_probs=40.5

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544           14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ   67 (69)
Q Consensus        14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ   67 (69)
                      .+.-.+-.||+|....++++|..+|.    .+..|.+.|  ||-|..+|+.|-.
T Consensus        48 ~p~i~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~   95 (107)
T 2k9n_A           48 NPALRTDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWM   95 (107)
T ss_dssp             SSCCTTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHH
T ss_pred             cccccccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHH
Confidence            44556779999999999999999995    499999886  7889999998743

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=96.64  E-value=0.0025  Score=39.15  Aligned_cols=51  Identities=20%  Similarity=0.261  Sum_probs=33.1

Q ss_pred             CCcccCCHHHHHHHHHHHHHhCCCCccCh----------------HHHHHHcCCCCCCHHHHHhhhcc
Q 038544           17 LPRLRWTPELHKHFSQAVERLGGKYKASP----------------KRILHMMNVKGLKLSHIKSHLQV   68 (69)
Q Consensus        17 k~R~~WT~eLH~~Fv~Av~~LGg~~~A~P----------------k~Il~~M~v~gLT~~~VkSHLQK   68 (69)
                      +..-+|.++|-..|++|++.+--......                ..|...-| .--|+.||.||+|.
T Consensus         4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tG-k~RtrKQVSShiQv   70 (82)
T 2hzd_A            4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQV   70 (82)
T ss_dssp             GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHS-CCCCSHHHHHHHHH
T ss_pred             CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHc-ccCCccchhHHHHH
Confidence            44678999999999999987742111111                11222222 34699999999993

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=96.48  E-value=0.0066  Score=36.69  Aligned_cols=45  Identities=20%  Similarity=0.241  Sum_probs=38.1

Q ss_pred             cccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544           19 RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV   68 (69)
Q Consensus        19 R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK   68 (69)
                      +-.||+|....++++|+.+|..   .+..|.+.|  ||-|..+|+.+-+.
T Consensus         4 k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l--~~Rt~~qcr~Rw~~   48 (105)
T 1gv2_A            4 KGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHL--KGRIGKQCRERWHN   48 (105)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTS--TTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhh--cCCCHHHHHHHHHh
Confidence            5679999999999999999962   499999987  67899999887554

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=96.46  E-value=0.009  Score=37.42  Aligned_cols=48  Identities=27%  Similarity=0.426  Sum_probs=40.4

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544           14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ   67 (69)
Q Consensus        14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ   67 (69)
                      .+.-.+-.||+|....+++++..+|.    .+..|.+.|  ||-|..+|+.|-.
T Consensus        74 ~p~~~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~r~~  121 (128)
T 1h8a_C           74 NPEVKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAVKNHWN  121 (128)
T ss_dssp             CSSSCCSCCCHHHHHHHHHHHHHHCS----CHHHHGGGS--TTCCHHHHHHHHH
T ss_pred             ccccccccCCHHHHHHHHHHHHHHCc----CHHHHHHHC--CCCCHHHHHHHHH
Confidence            34456778999999999999999995    489998875  7899999998754

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=96.40  E-value=0.0065  Score=38.20  Aligned_cols=49  Identities=18%  Similarity=0.249  Sum_probs=39.9

Q ss_pred             cCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544           13 NKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ   67 (69)
Q Consensus        13 ~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ   67 (69)
                      +.+...+..||+|.-...+++|+.+|.    .++.|.+.|  +|-|..++..+-.
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~~Rt~~qcr~Rw~   53 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATF--PNRNARQCRDRWK   53 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTC--TTCCHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHh
Confidence            345677889999999999999999995    499999887  4678888877643

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=96.37  E-value=0.012  Score=36.85  Aligned_cols=50  Identities=22%  Similarity=0.285  Sum_probs=40.9

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544           14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV   68 (69)
Q Consensus        14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK   68 (69)
                      .+.-.+-.||+|.-..++++|+.+|..   .+..|.+.|  ||-|..+++.+-..
T Consensus        22 ~p~~~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l--~~Rt~~qcr~Rw~~   71 (128)
T 1h8a_C           22 NPELNKGPWTKEEDQRVIEHVQKYGPK---RWSDIAKHL--KGRIGKQCRERWHN   71 (128)
T ss_dssp             CTTCCCSCCCHHHHHHHHHHHHHTCSC---CHHHHHHHS--SSCCHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHh--cCCcHHHHHHHHHH
Confidence            455667889999999999999999952   499999987  57799998876543

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=95.33  E-value=0.00061  Score=41.27  Aligned_cols=49  Identities=18%  Similarity=0.120  Sum_probs=40.0

Q ss_pred             CCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544           15 SELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN   69 (69)
Q Consensus        15 ~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy   69 (69)
                      +.-.+-.||+|....|+++|..+|-    .+..|...|  +|-|..+|+.|-+.|
T Consensus        12 p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l--~gRt~~q~k~r~~~~   60 (89)
T 2ltp_A           12 ENLYFQGWTEEEMGTAKKGLLEHGR----NWSAIARMV--GSKTVSQCKNFYFNY   60 (89)
Confidence            3445668999999999999999995    388888875  678999999886544

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=96.19  E-value=0.0016  Score=39.45  Aligned_cols=46  Identities=20%  Similarity=0.237  Sum_probs=36.3

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544           20 LRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ   67 (69)
Q Consensus        20 ~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ   67 (69)
                      -.||.+....|..|+..++....-.+.+|.+.  |||-|.++|+.|-|
T Consensus        21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~--VpGKT~eEVk~hY~   66 (74)
T 4eef_G           21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQY--VKGRTPEEVKKHYE   66 (74)
T ss_dssp             -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGG--SCSSCHHHHHGGGC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH--cCCCCHHHHHHHHH
Confidence            46999999999999999875333456677665  45889999999976

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=96.17  E-value=0.013  Score=34.91  Aligned_cols=45  Identities=7%  Similarity=0.037  Sum_probs=36.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544           21 RWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ   67 (69)
Q Consensus        21 ~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ   67 (69)
                      .||.+....|.+|+..++....-.+.+|.+.+  +|-|.++|..|-+
T Consensus        10 ~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V--~gKT~eE~~~hY~   54 (73)
T 1wgx_A           10 EWNEKELQKLHCAFASLPKHKPGFWSEVAAAV--GSRSPEECQRKYM   54 (73)
T ss_dssp             CCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHT--TTSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCccHHHHHHHHc--CCCCHHHHHHHHH
Confidence            59999999999999999843334577887765  5679999998853

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=96.14  E-value=0.014  Score=36.63  Aligned_cols=47  Identities=21%  Similarity=0.306  Sum_probs=39.1

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhh
Q 038544           14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHL   66 (69)
Q Consensus        14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHL   66 (69)
                      .+...+-.||+|....++++|..+|.    .+..|.+.|  ||-|..+|+.+-
T Consensus        57 ~p~~~~~~WT~eEd~~L~~~v~~~G~----~W~~Ia~~l--~gRt~~~~k~rw  103 (126)
T 3osg_A           57 APSISHTPWTAEEDALLVQKIQEYGR----QWAIIAKFF--PGRTDIHIKNRW  103 (126)
T ss_dssp             STTSCCSCCCHHHHHHHHHHHHHHCS----CHHHHHTTS--TTCCHHHHHHHH
T ss_pred             ccccccccCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHH
Confidence            34455668999999999999999996    389998865  688999999874

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=96.12  E-value=0.016  Score=37.43  Aligned_cols=48  Identities=29%  Similarity=0.432  Sum_probs=40.7

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544           14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ   67 (69)
Q Consensus        14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ   67 (69)
                      .+...+-.||+|....+++++.++|.    .+..|...|  ||-|..+|+.|-.
T Consensus       105 ~p~~~~~~WT~eEd~~L~~~~~~~g~----~W~~Ia~~l--~gRt~~~~knr~~  152 (159)
T 1h89_C          105 NPEVKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAIKNHWN  152 (159)
T ss_dssp             CTTSCCSCCCHHHHHHHHHHHHHHCS----CHHHHHTTS--TTCCHHHHHHHHH
T ss_pred             CccccccCCChHHHHHHHHHHHHHCC----CHHHHHHHC--CCCCHHHHHHHHH
Confidence            45556788999999999999999995    489998864  7899999998754

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=96.10  E-value=0.013  Score=37.86  Aligned_cols=54  Identities=15%  Similarity=0.080  Sum_probs=44.5

Q ss_pred             ccccCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcC--CCCCCHHHHHhhh
Q 038544           10 RQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMN--VKGLKLSHIKSHL   66 (69)
Q Consensus        10 r~~~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~--v~gLT~~~VkSHL   66 (69)
                      |.....++.|-.||+|.-...+++|+.+|.   -.+..|+..+.  .+|-|..+++.+-
T Consensus         8 ~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~---G~W~~Ia~~~~~~f~~RT~v~lKdRW   63 (121)
T 2juh_A            8 RSELSQRRIRRPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKW   63 (121)
T ss_dssp             CCCCCCCCSSCCCCHHHHHHHHHHHHHHGG---GCHHHHHHHHCSCCSSCCSHHHHHHH
T ss_pred             CccccCCCCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhccccCCCCHHHHHHHH
Confidence            344567888999999999999999999995   25999999875  3888998888653

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=96.01  E-value=0.031  Score=36.10  Aligned_cols=51  Identities=18%  Similarity=0.077  Sum_probs=42.3

Q ss_pred             ccCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcC--CCCCCHHHHHhh
Q 038544           12 YNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMN--VKGLKLSHIKSH   65 (69)
Q Consensus        12 ~~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~--v~gLT~~~VkSH   65 (69)
                      ....++.|-.||+|.-...+++|+.+|.   -.++.|+..+.  .++-|..+++.+
T Consensus        24 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~~~~RT~vdlKdR   76 (122)
T 2roh_A           24 DFGQRRIRRPFTVAEVELLVEAVEHLGT---GRWRDVKFRAFENVHHRTYVDLKDK   76 (122)
T ss_dssp             CCCCCCCCCCCCHHHHHHHHHHHHHHSS---SCHHHHHHHHHSSSCCCCHHHHHHH
T ss_pred             CcCCCCCCCCCCHHHHHHHHHHHHHHCC---CChHHHHHHhccccCCCCHHHHHHH
Confidence            3456788999999999999999999995   25999999763  488999998764

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=95.91  E-value=0.013  Score=36.93  Aligned_cols=48  Identities=23%  Similarity=0.351  Sum_probs=39.8

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544           14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ   67 (69)
Q Consensus        14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ   67 (69)
                      .+...+-.||+|....++++|..+|..    +..|.+.|  ||-|..+|+.|-.
T Consensus        49 ~p~~~~~~Wt~eEd~~L~~~~~~~G~~----W~~Ia~~l--~gRt~~~~k~rw~   96 (131)
T 3zqc_A           49 DPAVVKHAWTPEEDETIFRNYLKLGSK----WSVIAKLI--PGRTDNAIKNRWN   96 (131)
T ss_dssp             STTCCCSCCCHHHHHHHHHHHHHSCSC----HHHHTTTS--TTCCHHHHHHHHH
T ss_pred             CccccCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHc--CCCCHHHHHHHHH
Confidence            445556689999999999999999963    89998865  6889999998754

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=95.80  E-value=0.019  Score=35.06  Aligned_cols=42  Identities=21%  Similarity=0.237  Sum_probs=35.4

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhh
Q 038544           20 LRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHL   66 (69)
Q Consensus        20 ~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHL   66 (69)
                      ..||+|.-..++++|+.+|.   ..+..|.+.|+  |-|..++..+-
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~--~Rt~~qcr~Rw   43 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGA---KDWIRISQLMI--TRNPRQCRERW   43 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTT--TSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcC--CCCHHHHHHHH
Confidence            57999999999999999995   25999999885  67888887653

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=95.80  E-value=0.029  Score=36.15  Aligned_cols=50  Identities=20%  Similarity=0.234  Sum_probs=40.8

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544           14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV   68 (69)
Q Consensus        14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK   68 (69)
                      .+...+-.||+|....++++|+.+|.   ..+..|.+.|  ||-|..+|+.+-..
T Consensus        53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~  102 (159)
T 1h89_C           53 NPELIKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHN  102 (159)
T ss_dssp             CTTCCCSCCCHHHHHHHHHHHHHHCS---CCHHHHHHTS--TTCCHHHHHHHHHH
T ss_pred             CCCcCCCCCChHHHHHHHHHHHHhCc---ccHHHHHHHc--CCCCHHHHHHHHHH
Confidence            44556789999999999999999995   2489999887  67899998876543

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=95.76  E-value=0.03  Score=33.75  Aligned_cols=43  Identities=14%  Similarity=0.118  Sum_probs=36.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCccChHHHHHHcC--CCCCCHHHHHhhh
Q 038544           21 RWTPELHKHFSQAVERLGGKYKASPKRILHMMN--VKGLKLSHIKSHL   66 (69)
Q Consensus        21 ~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~--v~gLT~~~VkSHL   66 (69)
                      .||+|.....+++|+.+|.   -.++.|++...  ++|-|..+|+.+-
T Consensus         2 ~WT~eEd~~L~~gv~k~G~---g~W~~I~~~~~~~~~~RT~~~lKdrW   46 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKW   46 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCS---SCHHHHHHHHCTTCTTSCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCC---CCcHHHHHhhccccCCCCHHHHHHHH
Confidence            4999999999999999995   24999998643  5889999998753

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=95.05  E-value=0.14  Score=29.76  Aligned_cols=45  Identities=20%  Similarity=0.209  Sum_probs=37.5

Q ss_pred             CCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcC-CCCCCHHHHHh
Q 038544           16 ELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMN-VKGLKLSHIKS   64 (69)
Q Consensus        16 kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~-v~gLT~~~VkS   64 (69)
                      .+.|-.||+|.-...++.|+.+|.    .++.|+.--. .++-|.-+||.
T Consensus         5 ~~~r~~WT~EE~~~L~~gV~k~G~----~W~~I~~~y~f~~~RT~VdLKd   50 (62)
T 1x58_A            5 SSGRKDFTKEEVNYLFHGVKTMGN----HWNSILWSFPFQKGRRAVDLAH   50 (62)
T ss_dssp             CCCSSSCCHHHHHHHHHHHHHHCS----CHHHHHHHSCCCTTCCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhH----hHHHHHHhCCCccCcccchHHH
Confidence            346788999999999999999995    4999997544 47888888875

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=94.68  E-value=0.14  Score=29.56  Aligned_cols=45  Identities=18%  Similarity=0.158  Sum_probs=34.3

Q ss_pred             CCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhh
Q 038544           16 ELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSH   65 (69)
Q Consensus        16 kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSH   65 (69)
                      +...-.||+|.+..|.+|+...|- +   ...|...| ||+-|..+|..+
T Consensus         5 r~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~~-v~~Kt~~~~v~f   49 (70)
T 2crg_A            5 SSGMEEWSASEACLFEEALEKYGK-D---FNDIRQDF-LPWKSLTSIIEY   49 (70)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHTCS-C---HHHHHHTT-CSSSCHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHHHHhCc-c---HHHHHHHH-cCCCCHHHHHHH
Confidence            345668999999999999999995 3   77887621 456688887654

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=94.18  E-value=0.03  Score=35.21  Aligned_cols=44  Identities=11%  Similarity=0.083  Sum_probs=34.9

Q ss_pred             cccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544           19 RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ   67 (69)
Q Consensus        19 R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ   67 (69)
                      +..||+|.-...+++|+..|..   .++.|.+.|  ||-|..++..+-+
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~--~~Rt~~qcr~Rw~   45 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQ---NWPRITSFL--PNRSPKQCRERWF   45 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSC---CGGGGTTSC--TTSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCcC---CHHHHHHHH--CCCCHHHHHHHHh
Confidence            3579999999999999999942   478887776  5778888876643

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=93.59  E-value=0.18  Score=30.72  Aligned_cols=40  Identities=8%  Similarity=0.085  Sum_probs=31.0

Q ss_pred             CcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHH
Q 038544           18 PRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIK   63 (69)
Q Consensus        18 ~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~Vk   63 (69)
                      ..-.||+|.|..|.+|+.+.|-.    ...|.+.+  |+-|..++-
T Consensus        42 ~~~~WT~eE~~~F~~~~~~~gK~----F~~Ia~~l--~~Kt~~~cV   81 (94)
T 4a69_C           42 VMNMWSEQEKETFREKFMQHPKN----FGLIASFL--ERKTVAECV   81 (94)
T ss_dssp             HTCCCCHHHHHHHHHHHHHSTTC----HHHHHHTC--TTCCHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCC----HHHHHHHc--CCCCHHHHH
Confidence            45679999999999999999852    78887765  455766654

>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19

Probab=82.56  E-value=2.1  Score=24.57  Aligned_cols=42  Identities=12%  Similarity=0.146  Sum_probs=33.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544           23 TPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ   67 (69)
Q Consensus        23 T~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ   67 (69)
                      |++...+-++++...|..+..+.+.|.+.+|+   +...|..||-
T Consensus        12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~   53 (77)
T 1qgp_A           12 YQDQEQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLY   53 (77)
T ss_dssp             HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHH
Confidence            67788888999999994456889999999997   4667777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	69
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	1e-13

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 56.9 bits (137), Expect = 1e-13
 Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 18 PRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ 67
          PR+ WT ELH  F  AV+ LG + +A PK+IL +MNV  L   ++ SHLQ
Sbjct: 6  PRVLWTHELHNKFLAAVDHLGVE-RAVPKKILDLMNVDKLTRENVASHLQ 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	69
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.97
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	98.16
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	98.01
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	97.66
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.62
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	97.61
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	97.48
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	97.42
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.17
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	97.15
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	96.8
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	96.76
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	96.7
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	95.55
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	94.62
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	93.85

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=6.8e-32  Score=159.65  Aligned_cols=55  Identities=45%  Similarity=0.701  Sum_probs=52.8

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544           14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN   69 (69)
Q Consensus        14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy   69 (69)
                      ..+|+|++||+|||++||+||++||+ +.|+||.|+++|+|+|||++||+||||||
T Consensus         2 ~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           2 AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            36899999999999999999999997 78999999999999999999999999998

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.5e-06  Score=48.40  Aligned_cols=45  Identities=20%  Similarity=0.374  Sum_probs=39.2

Q ss_pred             cccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544           19 RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN   69 (69)
Q Consensus        19 R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy   69 (69)
                      ...||+|....|++||..+|.    .+..|.+.|+  +-|..+|++|.++|
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~--~Rt~~q~k~ry~~~   46 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLIG--SRTVLQVKSYARQY   46 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHS--SSCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHcC--CCCHHHHHHHHHHH
Confidence            367999999999999999995    3999998875  67999999998764

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=4.5e-06  Score=44.48  Aligned_cols=44  Identities=16%  Similarity=0.143  Sum_probs=38.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544           21 RWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN   69 (69)
Q Consensus        21 ~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy   69 (69)
                      .||+|...+|++||+.+|-   ..++.|.+.|+  +-|..|+++|-++|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~---~nW~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGF---GNWQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCT---TCHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCC---ccHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            4999999999999999994   25999999987  56999999998775

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=2.8e-05  Score=43.61  Aligned_cols=47  Identities=9%  Similarity=0.060  Sum_probs=38.8

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhh
Q 038544           14 KSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHL   66 (69)
Q Consensus        14 ~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHL   66 (69)
                      +.++..-.||+|....|++||.++|..    +..|.++|  |+-|..+|+.|-
T Consensus        12 ~~~~~~~~WT~eE~~~f~~~~~~~G~~----w~~Ia~~~--~~rt~~q~~~~y   58 (68)
T d1xc5a1          12 KDRQVMNMWSEQEKETFREKFMQHPKN----FGLIASFL--ERKTVAECVLYY   58 (68)
T ss_dssp             TSTTTTTCCCTTTHHHHHHHHHHTTSC----SSSHHHHT--TTSCHHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHCCc----HHHHHHHc--CCCCHHHHHHHH
Confidence            445566679999999999999999953    77788875  678999999874

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=6.7e-05  Score=41.09  Aligned_cols=54  Identities=9%  Similarity=0.108  Sum_probs=41.9

Q ss_pred             ccCCCCCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544           12 YNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ   67 (69)
Q Consensus        12 ~~~~kk~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ   67 (69)
                      ...++..+-.||+|....|++||..+|....-.+..|.+.|  ||-|..+|..|-+
T Consensus         5 ~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l--~~Rt~~qc~~R~~   58 (60)
T d2cqra1           5 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV--PSKSKEDCIARYK   58 (60)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC--SSSCHHHHHHHHH
T ss_pred             cccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHc--CCCCHHHHHHHHH
Confidence            34455666779999999999999999963333588998776  5889999988754

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=97.61  E-value=6.7e-05  Score=41.53  Aligned_cols=45  Identities=16%  Similarity=0.302  Sum_probs=38.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544           21 RWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ   67 (69)
Q Consensus        21 ~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ   67 (69)
                      .||+|....|++||..+|......+.+|.+.|+  |-|..||+.|-+
T Consensus         3 ~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~--gRt~~qc~~r~~   47 (63)
T d2cjja1           3 PWSAKENKAFERALAVYDKDTPDRWANVARAVE--GRTPEEVKKHYE   47 (63)
T ss_dssp             SCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST--TCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC--CCCHHHHHHHHH
Confidence            499999999999999999644456999999885  679999998854

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00017  Score=39.86  Aligned_cols=46  Identities=20%  Similarity=0.260  Sum_probs=38.7

Q ss_pred             CCcccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544           17 LPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQV   68 (69)
Q Consensus        17 k~R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQK   68 (69)
                      +..-.||+|....|++|+..+|..    +..|.+.|  +|-|..+|+.+-.+
T Consensus         3 k~~~~WT~eE~~~f~~~~~~~G~~----w~~Ia~~~--~~kt~~q~~~~y~~   48 (65)
T d2iw5b1           3 KCNARWTTEEQLLAVQAIRKYGRD----FQAISDVI--GNKSVVQVKNFFVN   48 (65)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHSSC----HHHHHHHH--SSCCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCch----HHHHHHHc--CCCCHHHHHHHHHH
Confidence            445679999999999999999952    99999987  46799999987654

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=0.00014  Score=38.67  Aligned_cols=46  Identities=22%  Similarity=0.255  Sum_probs=38.7

Q ss_pred             cccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544           19 RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN   69 (69)
Q Consensus        19 R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy   69 (69)
                      |..||+|.....+++|+.+|..   .+..|.+.|  +|-|..||+.+-++|
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~--~~Rt~~qcr~Rw~~~   46 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTD---DWKVIANYL--PNRTDVQCQHRWQKV   46 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSS---CHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHH--CCCCHHHHHHHHHhh
Confidence            3579999999999999999952   499999987  578999999876543

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.17  E-value=0.00054  Score=37.37  Aligned_cols=40  Identities=20%  Similarity=0.272  Sum_probs=32.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhh
Q 038544           21 RWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSH   65 (69)
Q Consensus        21 ~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSH   65 (69)
                      .||+|.+..|++|+...|-.    ...|.+.| +|+-|..+|.+|
T Consensus         3 ~WT~eE~~~F~~~~~~yGKd----f~~I~~~~-v~~Ks~~~~v~f   42 (57)
T d2crga1           3 EWSASEACLFEEALEKYGKD----FNDIRQDF-LPWKSLTSIIEY   42 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCSC----HHHHHHTT-CSSSCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHccc----HHHHHHHH-cCCCCHHHHHHH
Confidence            59999999999999999953    77787643 356799998876

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.0008  Score=36.22  Aligned_cols=44  Identities=18%  Similarity=0.228  Sum_probs=38.1

Q ss_pred             cccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhh
Q 038544           19 RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSH   65 (69)
Q Consensus        19 R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSH   65 (69)
                      |-.||+|.-...+++|+.+|.   ..+..|.+.+..++-|..+++-.
T Consensus         2 r~~WT~eEd~~L~~~V~~~G~---~~W~~I~~~~~~~~Rt~~q~k~R   45 (55)
T d1w0ua_           2 KQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDR   45 (55)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---ChHHHHHhhcCCCCcCHHHHHHH
Confidence            457999999999999999994   24999999988888999998765

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0026  Score=33.77  Aligned_cols=44  Identities=20%  Similarity=0.272  Sum_probs=37.5

Q ss_pred             cccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhh
Q 038544           19 RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSH   65 (69)
Q Consensus        19 R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSH   65 (69)
                      |-.||+|.-...+++|+.+|..   .+..|.+.....+-|..+++..
T Consensus         2 r~~WT~eED~~L~~~v~~~G~~---~W~~I~~~~~~~~Rt~~q~r~R   45 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDR   45 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCC---CHHHHHhhcCCCCCCHHHHHHH
Confidence            4579999999999999999942   4999998877788899998764

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.0018  Score=33.98  Aligned_cols=40  Identities=33%  Similarity=0.451  Sum_probs=35.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhh
Q 038544           21 RWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHL   66 (69)
Q Consensus        21 ~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHL   66 (69)
                      .||+|.-..++++|+.+|-    .+..|...|  ||-|..+|+.+-
T Consensus         3 ~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~gRt~~~~knr~   42 (47)
T d1gv2a2           3 SWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAIKNHW   42 (47)
T ss_dssp             CCCHHHHHHHHHHHHHHSS----CHHHHHTTC--TTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhh----HHHHHHhHc--CCCCHHHHHHHH
Confidence            6999999999999999995    389998865  789999999874

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.0021  Score=34.20  Aligned_cols=46  Identities=17%  Similarity=0.232  Sum_probs=38.7

Q ss_pred             cccCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhccC
Q 038544           19 RLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQVN   69 (69)
Q Consensus        19 R~~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQKy   69 (69)
                      |-.||+|.-.+-+++|+++|.   ..++.|.+.|  ++-|..|++.+-++|
T Consensus         3 rg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qc~~Rw~~~   48 (52)
T d1gvda_           3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH   48 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHH--CCCCHHHHHHHHHhh
Confidence            557999999999999999994   2499999987  578999999876554

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.013  Score=32.27  Aligned_cols=44  Identities=14%  Similarity=0.334  Sum_probs=36.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCccChHHHHHHcCCCCCCHHHHHhhhc
Q 038544           21 RWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIKSHLQ   67 (69)
Q Consensus        21 ~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~v~gLT~~~VkSHLQ   67 (69)
                      .||+|-...|..|+..+.....-.+.+|.+.+|   -|.++|..+.+
T Consensus         3 eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg---kt~~ev~~~~k   46 (59)
T d2cqqa1           3 EWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG---RSVTDVTTKAK   46 (59)
T ss_dssp             CCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT---SCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC---CCHHHHHHHHH
Confidence            699999999999999996434566899999994   69999987754

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=94.62  E-value=0.05  Score=30.87  Aligned_cols=42  Identities=14%  Similarity=0.114  Sum_probs=35.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCccChHHHHHHcC--CCCCCHHHHHhh
Q 038544           21 RWTPELHKHFSQAVERLGGKYKASPKRILHMMN--VKGLKLSHIKSH   65 (69)
Q Consensus        21 ~WT~eLH~~Fv~Av~~LGg~~~A~Pk~Il~~M~--v~gLT~~~VkSH   65 (69)
                      .||+|.-+..+++|+.+|..   .+..|...|.  .++-|..+++..
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~---~W~~I~~~~~~~~~~Rt~~qck~R   45 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDK   45 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTTSCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcc---cHHHHHHHHHhhccCCCHHHHHHH
Confidence            49999999999999999952   4999999885  578899888753

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.85  E-value=0.022  Score=33.02  Aligned_cols=48  Identities=15%  Similarity=0.176  Sum_probs=38.0

Q ss_pred             cccCCHHHHHHHHHHHHHhCCC--CccChHHHHHHcCCCCCCHHHHHhhhcc
Q 038544           19 RLRWTPELHKHFSQAVERLGGK--YKASPKRILHMMNVKGLKLSHIKSHLQV   68 (69)
Q Consensus        19 R~~WT~eLH~~Fv~Av~~LGg~--~~A~Pk~Il~~M~v~gLT~~~VkSHLQK   68 (69)
                      |-.||+|.-...+++|..+|-.  ....+..|.+.|  ||-|..||+.+-..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~l--pgRt~~qcr~Rw~~   50 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYV--PNHTGNSIRHRFRV   50 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTS--TTSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHc--CCCCHHHHHHHHHH
Confidence            4579999999999999999842  234588997776  78899999876543