Citrus Sinensis ID: 038571

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
Protein Sequence
MEPGSNDKHEDGSSLPNGYNEEQAIDGNTDDRSKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWESQMKEEKQSFWVMRNESRKQMKLPGYFDREVYDVLDGVLAMPAVPLTTMSVSEEDEDDEVFDSDRSTAAGDGLFSDSEPSQRQEISHNPEKETTERQSPSKKVAAQLHVADTLKEKLAGTTTANGSTTQERWKRRRLSSCVSKETNMGDLLFKVLERNSSMLNTQLEAQNINCQLDREQKKEHSDNLIAAMNKLTDALLRIGNKL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccHHHHHHcccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcccHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mepgsndkhedgsslpngyneeqaidgntddrsktarnprwtrqETIVLIQGKRVVEDRIrgfrtstsafrsdhsepkwdSVASYCKqygvnrrpvqcrKRWGNLLVDFRKIKRWESQMKEEKQSFWVMRNEsrkqmklpgyfdrevydvldgvlampavplttmsvseededdevfdsdrstaagdglfsdsepsqrqeishnpeketterqspskkVAAQLHVADTLKEKLagtttangsttqerwkrrrlsscvsketnmGDLLFKVLERNSSMLNTQLEAQNINCQLDREQKKEHSDNLIAAMNKLTDALLRIGNKL
Flexible Loop (DISEMBL)
mepgsndkhedgsslpngyneeqaidgntddrsktarnprwtrqetivliqgkrvvedrIRGFrtstsafrsdhsepkwdSVASYCKQygvnrrpvqcrkrwgnLLVDFRKIKrwesqmkeekqsfwvMRNESRKQMKLPGYFDREVYDVLDGVLAMPAVPLTTMSVSEEDEDDEVFDSDRSTAAGdglfsdsepsqrqeishnpeketterqspskkVAAQLHVADTlkeklagtttangsttqerwkrrrlsscvsketnmgDLLFKVLERNSSMLNTQLEAQNINCQLDREQKKEHSDNLIAAMNKLTDALLRIGNKL
Low Complexity Region (SEG)
MEPGSNDKHEDGSSLPNGYNEEQAIDGNTDDRSKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWESQMKEEKQSFWVMRNESRKQMKLPGYFDREVYDVLDGVLAMPAVPLTTMsvseededdevfdsdrsTAAGDGLFSDSEPSQRQEISHNPEKETTERQSPSKKVAAQLHVADTLKEKLAGTTTANGSTTQERWKRRRLSSCVSKETNMGDLLFKVLERNSSMLNTQLEAQNINCQLDREQKKEHSDNLIAAMNKLTDALLRIGNKL
Disordered region (IsUnstruct)
****************************************WTRQETIVLIQGKRVVEDRIRGFRT************KWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWES*******SFWVMR*****QMKLPGYFDREVYDVLDGVLAMPAVPLT***************************************************************************************************MGDLLFKVLE*************************************************
Disordered Region (DISOPRED)
********************************************ETIVLIQGKRVV**********************WDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKR********************K**KLPGYFDREVYDVLDG**************************************************************************************************************************************************SDNLIAAMNKLTDALLRIGNKL
Disordered Region (DISEMBL)
**************LPNGYNEEQAID***********NPRWTRQETIVLIQGKRVVEDRIRGFRTS**************SVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWESQMKEEKQSFWVMRNESRKQMKLPGYFDREVYDVLDGVLAMPAVPLTTMSV************DRSTAAGDG********************************AQLHVADTLKEKLAGT********************VSKETNMGDLLFKVLERNSSMLNTQLEAQNINCQLDREQKKEHSDNLIAAMNKLTDALLRIGNKL
Disordered Region (DISPRO)
**************************************PRWTRQETIVLIQGKRVVEDRI*************HSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWESQMKEEKQSFWVMRNESRKQMKLPGYFDREVYDVLDGVLAMP******************************************************************************************************TNMGDLLFKVLERNSSMLNTQLEAQNINCQLDREQKKEHSDNLIAAMNKLTDALLRIGNKL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEPGSNDKHEDGSSLPNGYNEEQAIDGNTDDRSKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWESQMKEEKQSFWVMRNESRKQMKLPGYFDREVYDVLDGVLAMPAVPLTTMSVSEEDEDDEVFDSDRSTAAGDGLFSDSEPSQRQEISHNPEKETTERQSPSKKVAAQLHVADTLKEKLAGTTTANGSTTQERWKRRRLSSCVSKETNMGDLLFKVLERNSSxxxxxxxxxxxxxxxxxxxxxEHSDNLIAAMNKLTDALLRIGNKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
297734507	339	unnamed protein product [Vitis vinifera]	0.990	0.938	0.511	2e-82
225456485	359	PREDICTED: uncharacterized protein LOC10	0.990	0.885	0.477	2e-79
359473824	340	PREDICTED: uncharacterized protein LOC10	0.934	0.882	0.476	6e-76
449445594	355	PREDICTED: uncharacterized protein LOC10	0.940	0.850	0.466	2e-74
255543204	347	conserved hypothetical protein [Ricinus	0.915	0.847	0.482	2e-74
224136332	299	predicted protein [Populus trichocarpa]	0.925	0.993	0.492	6e-72
224057842	346	predicted protein [Populus trichocarpa]	0.900	0.835	0.479	1e-69
2459437	311	hypothetical protein [Arabidopsis thalia	0.909	0.938	0.443	2e-68
30685749	314	gt-2-related protein [Arabidopsis thalia	0.909	0.929	0.448	3e-67
297826811	318	hypothetical protein ARALYDRAFT_902429 [	0.894	0.902	0.439	3e-67

>gi|297734507|emb|CBI15754.3| unnamed protein product [Vitis vinifera]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 175/342 (51%), Positives = 234/342 (68%), Gaps = 24/342 (7%)

Query: 1   MEPGSNDKHEDGSSLPNGYNEEQAIDGNTDDRSKTARNPRWTRQETIVLIQGKRVVEDRI 60
           M P  +D HE+      G      IDG  DD++K AR+PRWTRQET VLIQGK++ E+R+
Sbjct: 1   MAPEHSDVHENAVG--VGVGVSNGIDGG-DDKNKVARHPRWTRQETFVLIQGKKIAENRV 57

Query: 61  RGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWESQMK 120
           R  R S+SAF SD  EPKWDSV+SYC+++GVNR PVQCRKRW NL+ DF+KIK WES+++
Sbjct: 58  RRGRRSSSAFGSDQVEPKWDSVSSYCRRHGVNRGPVQCRKRWSNLVGDFKKIKTWESEVR 117

Query: 121 EEKQSFWVMRNESRKQMKLPGYFDREVYDVLDG-VLAMPAVPLTTMSVSEEDEDDE---- 175
           E+ +SFWV+RN+ R++ KLPG+FDREVYDVLDG   +  A PL  +S   + E++E    
Sbjct: 118 EDAESFWVLRNDLRRERKLPGFFDREVYDVLDGRAFSATAFPLALVSAMPDGEEEEEEEE 177

Query: 176 -VFDSDRSTAAGDGLFSDSEPSQRQEISHNPEKETTER-QSPSKKVAAQLHVADTLKEKL 233
            VFDS R  AA DGLFSDSE   ++E S + EKETT   +SP++     L +++   +K 
Sbjct: 178 AVFDSGRQAAAEDGLFSDSEQLGQEEASGSLEKETTAATESPTQTTPIPLPISERKFQKF 237

Query: 234 AGTTTA--------------NGSTTQERWKRRRLSSCVSKETNMGDLLFKVLERNSSMLN 279
               T+               G  ++ERWKRRR+S     ETNM + L KVLERNS  LN
Sbjct: 238 YQGCTSQGKQKGKQHCSDAWTGPMSEERWKRRRVSVDGCAETNMEEQLIKVLERNSKRLN 297

Query: 280 TQLEAQNINCQLDREQKKEHSDNLIAAMNKLTDALLRIGNKL 321
            QLEAQN+N QLDR+Q+K+H+++L+AA++KLTDA++RI +KL
Sbjct: 298 AQLEAQNVNSQLDRDQRKDHANSLVAALSKLTDAIVRIADKL 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456485|ref|XP_002280881.1| PREDICTED: uncharacterized protein LOC100266238 [Vitis vinifera]

 Score =  302 bits (773), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 173/362 (47%), Positives = 232/362 (64%), Gaps = 44/362 (12%)

Query: 1   MEPGSNDKHEDGSSLPNGYNEEQAIDGNTDDRSKTARNPRWTRQETIVLIQGKRVVEDRI 60
           M P  +D HE+      G      IDG  DD++K AR+PRWTRQET VLIQGK++ E+R+
Sbjct: 1   MAPEHSDVHENAVG--VGVGVSNGIDGG-DDKNKVARHPRWTRQETFVLIQGKKIAENRV 57

Query: 61  RGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWESQMK 120
           R  R S+SAF SD  EPKWDSV+SYC+++GVNR PVQCRKRW NL+ DF+KIK WES+++
Sbjct: 58  RRGRRSSSAFGSDQVEPKWDSVSSYCRRHGVNRGPVQCRKRWSNLVGDFKKIKTWESEVR 117

Query: 121 EEKQSFWVMRNESRKQMKLPGYFDREVYDVLDG-VLAMPAVPLTTMSVSEEDEDDE---- 175
           E+ +SFWV+RN+ R++ KLPG+FDREVYDVLDG   +  A PL  +S   + +  +    
Sbjct: 118 EDAESFWVLRNDLRRERKLPGFFDREVYDVLDGRAFSATAFPLALVSAMPDVKSSDGMEP 177

Query: 176 ---------------------VFDSDRSTAAGDGLFSDSEPSQRQEISHNPEKETTER-Q 213
                                VFDS R  AA DGLFSDSE   ++E S + EKETT   +
Sbjct: 178 VAVAVEAEEEEGEEEEEEEEAVFDSGRQAAAEDGLFSDSEQLGQEEASGSLEKETTAATE 237

Query: 214 SPSKKVAAQLHVADTLKEKLAGTTTA--------------NGSTTQERWKRRRLSSCVSK 259
           SP++     L +++   +K     T+               G  ++ERWKRRR+S     
Sbjct: 238 SPTQTTPIPLPISERKFQKFYQGCTSQGKQKGKQHCSDAWTGPMSEERWKRRRVSVDGCA 297

Query: 260 ETNMGDLLFKVLERNSSMLNTQLEAQNINCQLDREQKKEHSDNLIAAMNKLTDALLRIGN 319
           ETNM + L KVLERNS  LN QLEAQN+N QLDR+Q+K+H+++L+AA++KLTDA++RI +
Sbjct: 298 ETNMEEQLIKVLERNSKRLNAQLEAQNVNSQLDRDQRKDHANSLVAALSKLTDAIVRIAD 357

Query: 320 KL 321
           KL
Sbjct: 358 KL 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473824|ref|XP_002269943.2| PREDICTED: uncharacterized protein LOC100267783 [Vitis vinifera]

 Score =  290 bits (742), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 161/338 (47%), Positives = 211/338 (62%), Gaps = 38/338 (11%)

Query: 10  EDGSSLPNGYNEEQAIDGNTDDRSKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSA 69
           +D  ++PNG N         DD S+  R PRWTRQE +VLIQGK+V E R+R  RT   A
Sbjct: 15  DDADAVPNGVN------AAGDDGSRAPRLPRWTRQEILVLIQGKKVAESRVRRGRTGGLA 68

Query: 70  FRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWESQMKEEKQSFWVM 129
           F S   EPKW SV+SYCK++GVNR PVQCRKRW NL  D++KIK WESQ+++E +SFWVM
Sbjct: 69  FGSAQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIRDESESFWVM 128

Query: 130 RNESRKQMKLPGYFDREVYDVLDGVLAMP-----------AVPLTTMSVSEEDEDDEVFD 178
           RN+ R++ +LPG+FDREVYD+LDGV A P             P     V+ E+E + VFD
Sbjct: 129 RNDVRREKRLPGFFDREVYDMLDGVGAAPPGPSGLALGLAPAPEGEGMVAPEEEAEAVFD 188

Query: 179 SDRSTAAGDGLFSDSEPSQRQEISHNPEKETTERQSPSKKVAAQLHVADTLKEKLAGTTT 238
           S RS AA DGLFSD E S       +PEKE   ++ P+  VAA + +++   +      +
Sbjct: 189 SGRSAAAEDGLFSDFEQS-----GGSPEKEPPAKEVPA-TVAAPVPISEKQYQPFPREGS 242

Query: 239 ANG--------------STTQERWKRRRLSSCVSKETN-MGDLLFKVLERNSSMLNTQLE 283
           + G              ST+QE  KR+R +    +ET  + D L +VLERN  ML+ QLE
Sbjct: 243 SQGPASKRHPASNPEMASTSQEGRKRKRFTVDGDEETTRLQDQLIEVLERNGRMLSDQLE 302

Query: 284 AQNINCQLDREQKKEHSDNLIAAMNKLTDALLRIGNKL 321
           AQN N QLDREQ+K+ +D L+A ++KL DAL RI +KL
Sbjct: 303 AQNTNFQLDREQRKDQADCLVAVLSKLADALGRIADKL 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445594|ref|XP_004140557.1| PREDICTED: uncharacterized protein LOC101222632 [Cucumis sativus]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 159/341 (46%), Positives = 205/341 (60%), Gaps = 39/341 (11%)

Query: 17  NGYNEEQAIDGNTDDRSKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSE 76
           NG +         DD SKT R PRWTRQE +VLIQGK+V E R+RG R ++ AF S   E
Sbjct: 18  NGVDVRPMSTDGGDDGSKTPRLPRWTRQEILVLIQGKKVAETRVRGGRAASLAFGSGQVE 77

Query: 77  PKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWESQMKEEKQSFWVMRNESRKQ 136
           PKW SV+SYCK++GVNR PVQCRKRW NL  DF+KIK WESQ++E+ +SFWVMRN+ R++
Sbjct: 78  PKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIREDTESFWVMRNDLRRE 137

Query: 137 MKLPGYFDREVYDVLDGVLAMPAVPLTTMSVS-----------------EEDEDDEVFDS 179
            KLPG+FDREVYD+LD   A    P   ++++                  + E + VFDS
Sbjct: 138 RKLPGFFDREVYDILDSGSAPSPSPALALALTPLPIPVPPPALNSDDGKPDAEPEHVFDS 197

Query: 180 DRSTAAGDGLFSDSEPSQRQEISHNPEKETTERQSPSKKVAAQLHVADTLKEKL------ 233
            ++ AA DGLFSD E   + E   +P KE   +  P       +     L EKL      
Sbjct: 198 SKTAAADDGLFSDFE---QDETCRSPLKEVAGKDVPPPTADGGIPAPTPLSEKLYRPPGH 254

Query: 234 ----AGTT-----TAN---GST-TQERWKRRRLSSCVSKETNMGDLLFKVLERNSSMLNT 280
                GTT      AN   GST +QE  KR+R++    +ET + D L  +LE+N  +L  
Sbjct: 255 DCPDQGTTNEKEAAANPEIGSTSSQEGRKRKRVALDGDEETILQDELIGILEKNGKLLTA 314

Query: 281 QLEAQNINCQLDREQKKEHSDNLIAAMNKLTDALLRIGNKL 321
           QLEAQN+N QLDREQ+K H+D L+A +NKL DAL RI +KL
Sbjct: 315 QLEAQNMNFQLDREQRKHHADGLVAVLNKLADALGRIADKL 355

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543204|ref|XP_002512665.1| conserved hypothetical protein [Ricinus communis] gi|223548626|gb|EEF50117.1| conserved hypothetical protein [Ricinus communis]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 156/323 (48%), Positives = 207/323 (64%), Gaps = 29/323 (8%)

Query: 24  AIDGNTDDRSKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVA 83
           +IDG  DD SKT R PRWTRQE +VLIQGK+V E+R+R  RT+  AF S   EPKW SV+
Sbjct: 29  SIDG-ADDGSKTPRLPRWTRQEILVLIQGKKVAENRVRRGRTAGMAFGSGQVEPKWASVS 87

Query: 84  SYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWESQMKEEKQSFWVMRNESRKQMKLPGYF 143
           SYCK++GVNR PVQCRKRW NL  D++KIK WE+ ++EE +SFWVMRN+ R++ KLPG+F
Sbjct: 88  SYCKRHGVNRGPVQCRKRWSNLAGDYKKIKEWENHIREETESFWVMRNDLRRERKLPGFF 147

Query: 144 DREVYDVLD---GVLAMPAVPLTTMSVSEEDEDDE-VFDSDRSTAAGDGLFSDSEPSQRQ 199
           DREV+D+LD   GV A PA P   ++++   ED E VFDS R+ AA DGLFSD E   ++
Sbjct: 148 DREVFDILDGAGGVSAAPATPGLALALAPATEDSEAVFDSGRTAAAEDGLFSDFE---QE 204

Query: 200 EISHNPEKETTERQSPSKK-----VAAQLHVAD--------------TLKEKLAGTTTAN 240
           +   +PEKE  +   P K      +AA + +++                 EK   +    
Sbjct: 205 DAGGSPEKEAVKEAPPIKAAATGGIAAPVPISEKQYQPAVRTDQSQGATNEKQPPSNPEM 264

Query: 241 GSTTQERWKRRRL--SSCVSKETNMGDLLFKVLERNSSMLNTQLEAQNINCQLDREQKKE 298
           GS   E  KR+R   +    + T + + L  VLERN  ML  QLEAQN N QLDREQ+K+
Sbjct: 265 GSGLHESRKRKRFGTTDGDEETTTLQNQLIGVLERNGEMLTAQLEAQNTNFQLDREQRKD 324

Query: 299 HSDNLIAAMNKLTDALLRIGNKL 321
            +++L+A +NKL DAL +I +KL
Sbjct: 325 QANSLVAVLNKLADALGKIADKL 347

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136332|ref|XP_002322303.1| predicted protein [Populus trichocarpa] gi|222869299|gb|EEF06430.1| predicted protein [Populus trichocarpa]

 Score =  276 bits (707), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 159/323 (49%), Positives = 210/323 (65%), Gaps = 26/323 (8%)

Query: 1   MEPGSNDKHEDGS-SLPNGYNEEQAIDGNTDDRSKTARNPRWTRQETIVLIQGKRVVEDR 59
           M   SND  E    S PNG  +EQA+D   DD++KT R+PRWTRQET VLI+ K+VVE+R
Sbjct: 1   MVSESNDGQETQELSRPNGVRKEQALD--VDDKTKT-RHPRWTRQETFVLIESKKVVENR 57

Query: 60  IRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWESQM 119
            +  R STSA  SD  E KWDSV+SYC Q+GVNR PVQCRKRWGN+L DF+KIK WESQ 
Sbjct: 58  FQWSRRSTSALGSDQIESKWDSVSSYCSQHGVNRGPVQCRKRWGNMLCDFKKIKTWESQQ 117

Query: 120 KEEKQSFWVMRNESRKQMKLPGYFDREVYDVLDG-VLAMPAVPLTTMSVSEEDEDDEVFD 178
             E +SFW+MRNE R++ KLP +FD+EVY VLDG V+   A+PL+ ++  ++    +  D
Sbjct: 118 MNETESFWMMRNELRRERKLPSFFDKEVYYVLDGRVITTDAIPLSQITFKKQ---MDCID 174

Query: 179 SDRSTAAGDGLFSDSEPSQRQEISHNPEKETTERQSPSKKVAAQLHVADTLKEKLAGTTT 238
            D +  A +            + S     E                   T K++  GT T
Sbjct: 175 RDEAATAEEEEEEHEYTEANLDSSQCARAEDG-----------------TTKKQNLGTKT 217

Query: 239 ANGSTTQERWKRRRLSSCVSKETNMGDLLFKVLERNSSMLNTQLEAQNINCQLDREQKKE 298
             GS ++E  K+RRLSS  S++ ++ D L KVL RN SMLN+QL+AQNINCQLDREQ+K+
Sbjct: 218 RKGSMSREG-KKRRLSSDESEDPDLEDRLIKVLGRNMSMLNSQLKAQNINCQLDREQRKD 276

Query: 299 HSDNLIAAMNKLTDALLRIGNKL 321
           H+D+L+ A+NKLTDA+++I +KL
Sbjct: 277 HNDSLVRALNKLTDAIVKIADKL 299

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057842|ref|XP_002299351.1| predicted protein [Populus trichocarpa] gi|222846609|gb|EEE84156.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 152/317 (47%), Positives = 193/317 (60%), Gaps = 28/317 (8%)

Query: 30  DDRSKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQY 89
           DD +K  R PRWTRQE +VLIQGKRV E+R+R  R S     S   EPKW SV+SYCK++
Sbjct: 33  DDGNKAPRLPRWTRQEILVLIQGKRVAENRVRRGRASGMGIGSGQIEPKWASVSSYCKRH 92

Query: 90  GVNRRPVQCRKRWGNLLVDFRKIKRWESQMKEEKQSFWVMRNESRKQMKLPGYFDREVYD 149
           GVNR PVQCRKRW NL  DF+KIK WE+ ++EE +SFWVMRN+ R++ KLPG+FDREVYD
Sbjct: 93  GVNRGPVQCRKRWSNLAGDFKKIKEWETSIREETESFWVMRNDLRRERKLPGFFDREVYD 152

Query: 150 VLDG------VLAMPAVPLTTMSVSEEDEDDEVFDSDRSTAAGDGLFSDSEPSQRQEISH 203
           +LDG       LA+   P +T + +E   ++ VFDS RS AA DGLFSD E   ++E   
Sbjct: 153 ILDGGGGTVPGLALALAPSSTAAEAEAVAEEVVFDSGRSAAAEDGLFSDFE---QEEGGG 209

Query: 204 NPEKETTERQSPSKKVAAQLHVADTLKEKL------------------AGTTTANGSTTQ 245
           +PE    E Q     V A +     + EK                     T    GS + 
Sbjct: 210 SPEAVVKEVQPIKMAVTAGVANPTPISEKQYQPAPRASQAQVPPNDKRPATNPEMGSASH 269

Query: 246 ERWKRRRLSSCVSKET-NMGDLLFKVLERNSSMLNTQLEAQNINCQLDREQKKEHSDNLI 304
           E  KR+R      +ET ++   L  VLERN  ML  QLEAQN N QLDREQ+K+H+D L+
Sbjct: 270 EERKRKRFVIDGDEETISLQSHLIDVLERNGKMLTAQLEAQNTNFQLDREQRKDHADGLV 329

Query: 305 AAMNKLTDALLRIGNKL 321
           A +NKL +AL +I +KL
Sbjct: 330 AVLNKLANALGKIADKL 346

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2459437|gb|AAB80672.1| hypothetical protein [Arabidopsis thaliana] gi|340749209|gb|AEK67478.1| trihelix [Arabidopsis thaliana]

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 141/318 (44%), Positives = 197/318 (61%), Gaps = 26/318 (8%)

Query: 13  SSLPNGYNEEQAIDGNTDDRSKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRS 72
           S++  G N     +   DD  KTAR PRWTRQE +VLIQGKRV E+R+R  R +  A  S
Sbjct: 11  SAVDGGENSSAPSNDGGDDGVKTARLPRWTRQEILVLIQGKRVAENRVRRGRAAGMALGS 70

Query: 73  DHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWESQMKEEKQSFWVMRNE 132
              EPKW SV+SYCK++GVNR PVQCRKRW NL  D++KIK WESQ+KEE +S+WVMRN+
Sbjct: 71  GQMEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIKEETESYWVMRND 130

Query: 133 SRKQMKLPGYFDREVYDVLDGVLAMPAVPLTTMSVSEEDEDDEVFDSDRSTAAGDGLFSD 192
            R++ KLPG+FD+EVYD++DG +  PAVP+ ++ +              + A+ +GL SD
Sbjct: 131 VRREKKLPGFFDKEVYDIVDGGVIPPAVPVLSLGL--------------APASDEGLLSD 176

Query: 193 SEPSQRQE-ISHNP-EKETTERQSPSKKVAAQLHVADTLKEKLAGTTTANGSTTQERWKR 250
            +  +  E ++  P  K  T+++     VA Q  V +   E         GST+QE  KR
Sbjct: 177 LDRRESPEKLNSTPVAKSVTDKEKQEACVADQGRVKEKQPE---AANVEGGSTSQEERKR 233

Query: 251 RRLS-------SCVSKETNMGDLLFKVLERNSSMLNTQLEAQNINCQLDREQKKEHSDNL 303
           +R S           +   M + L ++LERN  +L  QLE QN+N +LDREQ+K+H D+L
Sbjct: 234 KRTSFGEKEEEEEEGETKKMQNQLIEILERNGQLLAAQLEVQNLNLKLDREQRKDHGDSL 293

Query: 304 IAAMNKLTDALLRIGNKL 321
           +A +NKL DA+ +I +K+
Sbjct: 294 VAVLNKLADAVAKIADKM 311

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685749|ref|NP_850213.1| gt-2-related protein [Arabidopsis thaliana] gi|17529158|gb|AAL38805.1| unknown protein [Arabidopsis thaliana] gi|20465851|gb|AAM20030.1| unknown protein [Arabidopsis thaliana] gi|330253757|gb|AEC08851.1| gt-2-related protein [Arabidopsis thaliana]

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 144/321 (44%), Positives = 199/321 (61%), Gaps = 29/321 (9%)

Query: 13  SSLPNGYNEEQAIDGNTDDRSKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRS 72
           S++  G N     +   DD  KTAR PRWTRQE +VLIQGKRV E+R+R  R +  A  S
Sbjct: 11  SAVDGGENSSAPSNDGGDDGVKTARLPRWTRQEILVLIQGKRVAENRVRRGRAAGMALGS 70

Query: 73  DHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWESQMKEEKQSFWVMRNE 132
              EPKW SV+SYCK++GVNR PVQCRKRW NL  D++KIK WESQ+KEE +S+WVMRN+
Sbjct: 71  GQMEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIKEETESYWVMRND 130

Query: 133 SRKQMKLPGYFDREVYDVLDGVLAMPAVPLTTMSVSEEDEDDEVFDSDRSTAAGDGLFSD 192
            R++ KLPG+FD+EVYD++DG +  PAVP+ ++ +              + A+ +GL SD
Sbjct: 131 VRREKKLPGFFDKEVYDIVDGGVIPPAVPVLSLGL--------------APASDEGLLSD 176

Query: 193 SEPSQRQE-ISHNP-EKETTERQSPSKKVAAQLHVADTLKEKLAGTTTAN---GSTTQER 247
            +  +  E ++  P  K  T+     K+ A    VAD  + K      AN   GST+QE 
Sbjct: 177 LDRRESPEKLNSTPVAKSVTDVIDKEKQEAC---VADQGRVKEKQPEAANVEGGSTSQEE 233

Query: 248 WKRRRLS-------SCVSKETNMGDLLFKVLERNSSMLNTQLEAQNINCQLDREQKKEHS 300
            KR+R S           +   M + L ++LERN  +L  QLE QN+N +LDREQ+K+H 
Sbjct: 234 RKRKRTSFGEKEEEEEEGETKKMQNQLIEILERNGQLLAAQLEVQNLNLKLDREQRKDHG 293

Query: 301 DNLIAAMNKLTDALLRIGNKL 321
           D+L+A +NKL DA+ +I +K+
Sbjct: 294 DSLVAVLNKLADAVAKIADKM 314

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826811|ref|XP_002881288.1| hypothetical protein ARALYDRAFT_902429 [Arabidopsis lyrata subsp. lyrata] gi|297327127|gb|EFH57547.1| hypothetical protein ARALYDRAFT_902429 [Arabidopsis lyrata subsp. lyrata]

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 145/330 (43%), Positives = 198/330 (60%), Gaps = 43/330 (13%)

Query: 13  SSLPNGYNEEQAIDGNTDDRSKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRS 72
           S++  G N     +   DD  KTAR PRWTRQE +VLIQGKRV E+R+R  R +  A  S
Sbjct: 11  SAVDGGENSSAPSNDGGDDGVKTARLPRWTRQEILVLIQGKRVAENRVRRGRAAGMALGS 70

Query: 73  DHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWESQMKEEKQSFWVMRNE 132
              EPKW SV+SYC+++GVNR PVQCRKRW NL  D++KIK WESQ+KEE +S+WVMRN+
Sbjct: 71  GQMEPKWASVSSYCRRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIKEETESYWVMRND 130

Query: 133 SRKQMKLPGYFDREVYDVLDGVLAMPAVPLTTMSVSEEDEDDEVFDSDRSTAAGDGLFSD 192
            R++ KLPG+FD+EVYD++DG +  PAVP+ ++ ++   E              +GL SD
Sbjct: 131 VRREKKLPGFFDKEVYDIVDGGVIPPAVPVLSLGLAPASE--------------EGLLSD 176

Query: 193 SEPSQRQEISHNPEKETTERQSPSKKVAAQLHVADTLKEKLAGT----------TTAN-- 240
            +   R+E   +PEK  +   +P  K      V D  K++  G             AN  
Sbjct: 177 LD---RRESVRSPEKLNS---TPVAKSVT--DVTDKEKQEACGADQGRVKEKHPEAANVE 228

Query: 241 -GSTTQERWKRRRLS--------SCVSKETNMGDLLFKVLERNSSMLNTQLEAQNINCQL 291
            GST QE  KR+R S            +  NM   L ++LERN  +L  QLE QN+N +L
Sbjct: 229 AGSTLQEERKRKRTSFGEKEEEEEEEGETKNMQSQLIEILERNGQLLAAQLEVQNLNLKL 288

Query: 292 DREQKKEHSDNLIAAMNKLTDALLRIGNKL 321
           DREQ+K+H D+L+A +NKL DA+ +I +K+
Sbjct: 289 DREQRKDHGDSLVAVLNKLADAVAKIADKM 318

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
TAIR|locus:2051174	314	AT2G33550 [Arabidopsis thalian	0.909	0.929	0.451	1.8e-64
TAIR|locus:2128186	294	AT4G31270 [Arabidopsis thalian	0.872	0.952	0.212	1.1e-15
TAIR|locus:2058718	340	AT2G35640 [Arabidopsis thalian	0.395	0.373	0.296	9.6e-13
TAIR|locus:2197490	383	AT1G31310 [Arabidopsis thalian	0.398	0.334	0.284	1.2e-08
TAIR|locus:2165331	972	AT5G51800 [Arabidopsis thalian	0.355	0.117	0.299	1e-05

TAIR|locus:2051174 AT2G33550 [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 145/321 (45%), Positives = 198/321 (61%)

Query:    13 SSLPNGYNEEQAIDGNTDDRSKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRS 72
             S++  G N     +   DD  KTAR PRWTRQE +VLIQGKRV E+R+R  R +  A  S
Sbjct:    11 SAVDGGENSSAPSNDGGDDGVKTARLPRWTRQEILVLIQGKRVAENRVRRGRAAGMALGS 70

Query:    73 DHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWESQMKEEKQSFWVMRNE 132
                EPKW SV+SYCK++GVNR PVQCRKRW NL  D++KIK WESQ+KEE +S+WVMRN+
Sbjct:    71 GQMEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIKEETESYWVMRND 130

Query:   133 SRKQMKLPGYFDREVYDVLDGVLAMPAVPLTTMXXXXXXXXXXXXXXXXXTAAGDGLFSD 192
              R++ KLPG+FD+EVYD++DG +  PAVP+ ++                  A+ +GL SD
Sbjct:   131 VRREKKLPGFFDKEVYDIVDGGVIPPAVPVLSLGLA--------------PASDEGLLSD 176

Query:   193 SEPSQRQE-ISHNP-EKETTERQSPSKKVAAQLHVADT--LKEKLA-GTTTANGSTTQER 247
              +  +  E ++  P  K  T+     K+ A    VAD   +KEK         GST+QE 
Sbjct:   177 LDRRESPEKLNSTPVAKSVTDVIDKEKQEAC---VADQGRVKEKQPEAANVEGGSTSQEE 233

Query:   248 WKRRRLSSCVSKETN-------MGDLLFKVLERNSSMLNTQLEAQNINCQLDREQKKEHS 300
              KR+R S    +E         M + L ++LERN  +L  QLE QN+N +LDREQ+K+H 
Sbjct:   234 RKRKRTSFGEKEEEEEEGETKKMQNQLIEILERNGQLLAAQLEVQNLNLKLDREQRKDHG 293

Query:   301 DNLIAAMNKLTDALLRIGNKL 321
             D+L+A +NKL DA+ +I +K+
Sbjct:   294 DSLVAVLNKLADAVAKIADKM 314

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2128186 AT4G31270 [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 64/301 (21%), Positives = 126/301 (41%)

Query:    22 EQAIDGNTDDRSKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDS 81
             E+   G+   RS+ A  P W  ++ +VL+     VE        + S+F+      KW  
Sbjct:     2 EEGTSGSRRTRSQVA--PEWAVKDCLVLVNEIAAVE---ADCSNALSSFQ------KWTM 50

Query:    82 VASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWESQMKEEKQSFWVMRNESRKQMKLPG 141
             +   C    V+R   QCR++W +L+ D+ +IK+WESQ +   +S+W + ++ RK + LPG
Sbjct:    51 ITENCNALDVSRNLNQCRRKWDSLMSDYNQIKKWESQYRGTGRSYWSLSSDKRKLLNLPG 110

Query:   142 YFDREVYDVLDGVLAMPAVPLTTMXXXXXXXXXXXXXXXXXTAAGDGLFSDSEPSQRQEI 201
               D E+++ ++ V+ +      T                     G           ++  
Sbjct:   111 DIDIELFEAINAVVMIQDEKAGTESDSDPEAQDVVDLSAELAFVGSKRSRQRTMVMKETK 170

Query:   202 SHNPEKETTERQSPSKKVAAQL-HVADTLKEKLAGTTTANGSTTQERWKRRRLSSCVS-K 259
                P     +  +  K +  +  H   T+ EK       + ST +E  +   +   V   
Sbjct:   171 KEEPRTSRVQVNTREKPITTKATHQNKTMGEK---KPVEDMSTDEEEDETMNIEEDVEVM 227

Query:   260 ETNMG---DLLFKVLERNSSMLNTQLEAQNINCQLDREQKKEHSDNLIAAMNKLTDALLR 316
             E  +    DL+  ++ RN +  N   +  +++ +L  +  ++  D LI  ++++   L R
Sbjct:   228 EAKLSYKIDLIHAIVGRNLAKDNETKDGVSMDDKL--KSVRQQGDELIGCLSEIVSTLNR 285

Query:   317 I 317
             +
Sbjct:   286 L 286

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0009506 "plasmodesma" evidence=IDA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2058718 AT2G35640 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
 Identities = 40/135 (29%), Positives = 65/135 (48%)

Query:    34 KTARNPRWTRQETIVLIQGKRVVEDR-IRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVN 92
             +  R   WT  ET+VLI+ K++ + R +R         R+  +E +W  +  YC + G  
Sbjct:    15 RECRKGNWTVSETLVLIEAKKMDDQRRVRRSEKQPEG-RNKPAELRWKWIEEYCWRRGCY 73

Query:    93 RRPVQCRKRWGNLLVDFRKIKRWESQMKEEK------QSFWVMRNESRKQMKLPGYFDRE 146
             R   QC  +W NL+ D++KI+ +E    E         S+W M    RK+  LP     +
Sbjct:    74 RNQNQCNDKWDNLMRDYKKIREYERSRVESSFNTVTSSSYWKMDKTERKEKNLPSNMLPQ 133

Query:   147 VYDVLDGVLAMPAVP 161
             +YDVL  ++    +P
Sbjct:   134 IYDVLSELVDRKTLP 148

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2197490 AT1G31310 [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
 Identities = 43/151 (28%), Positives = 68/151 (45%)

Query:    37 RNPRWTRQETIVLIQGKRVVEDR-IR---GFRTSTSA--FRSDH-SEPKWDSVASYCKQY 89
             R   WT  ET+VLI+ KR+ ++R +R   G          RS+  +E +W  +  YC + 
Sbjct:    15 RKGNWTLNETMVLIEAKRMDDERRMRRSIGLPPPEQQQDIRSNKPAELRWKWIEDYCWRK 74

Query:    90 GVNRRPVQCRKRWGNLLVDFRKIKRWESQMKE----------------EKQSFWVMRNES 133
             G  R   QC  +W NL+ D++K++ +E +  E                E  S+W M    
Sbjct:    75 GCMRSQNQCNDKWDNLMRDYKKVREYERRRVESSITAGESSSSSAPAGETASYWKMEKSE 134

Query:   134 RKQMKLPGYFDREVYDVLDGVLAMPAVPLTT 164
             RK+  LP     + Y  L  V+    +P +T
Sbjct:   135 RKERSLPSNMLPQTYQALFEVVESKTLPSST 165

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2165331 AT5G51800 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 35/117 (29%), Positives = 56/117 (47%)

Query:    38 NPRWTRQETIVLIQGKRV-VEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPV 96
             +P W   E + L +  R   + +  G  + +   R      K   VA Y  ++G+NR   
Sbjct:   148 SPVWKPNEMLWLARAWRAQYQTQGTGSGSGSVEGRGKTRAEKDREVAEYLNRHGINRDSK 207

Query:    97 QCRKRWGNLLVDFRKIKRWESQMKEEK--QSFWVMRNESRKQMKLPGYFDREVYDVL 151
                 +W N+L +FRK+  WE    ++K  +S++ +    RKQ +LP  FD EVY  L
Sbjct:   208 IAGTKWDNMLGEFRKVYEWEKCGDQDKYGKSYFRLSPYERKQHRLPASFDEEVYQEL 264


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.127   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      321       304   0.00098  115 3  11 23  0.45    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  224 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.28u 0.15s 28.43t   Elapsed:  00:00:01
  Total cpu time:  28.29u 0.15s 28.44t   Elapsed:  00:00:01
  Start:  Sat May 11 13:02:00 2013   End:  Sat May 11 13:02:01 2013

GO:0005634 "nucleus" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0048445 "carpel morphogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	321
cd12203	66	cd12203, GT1, GT1, myb-like, SANT family	3e-11
pfam13837	84	pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-bindi	4e-10

>gnl|CDD|213402 cd12203, GT1, GT1, myb-like, SANT family

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 9/75 (12%)

Query: 39  PRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQC 98
            RW R+ET+ LI+ +R +E R   F+ + S       +  W+ +A+  ++ G NR   QC
Sbjct: 1   KRWPREETLSLIRLRREMESR---FQETKSK------KALWEEIAAKMRELGYNRSAKQC 51

Query: 99  RKRWGNLLVDFRKIK 113
           +++W NL   ++K+K
Sbjct: 52  KEKWENLNKYYKKVK 66

GT-1, a myb-like protein, is one of the GT trihelix transcription factors. GT-1 binds the GT cis-element of rbcS-3A, a light-induced gene, as a dimer. Arabidopsis GT-1 is a trans-activator and acts in the stabilization of components of the transcrtiption pre-initiation complex comprised of TFIIA-TBP-TATA. The isolated GT-1 DNA-binding domain is sufficient to bind DNA. This region closely resemble the myb domain, but with longer helices. It has been proposed that GT-1 may respond to light signals via calcium-dependent phosphorylation to create a light-modulated molecular switch. These proteins are members of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of the DNA-binding Myb domains and is found in a diverse set of proteins. Length = 66

>gnl|CDD|222409 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-binding domain

 Score = 55.4 bits (134), Expect = 4e-10
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 39  PRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPK-WDSVASYCKQYGVNRRPVQ 97
            +WT +ET  LI         I G R  +   R        W+ +A    + G NR   Q
Sbjct: 2   NKWTDEETRALI--------EIWGERLDSLFQRGTKRNKHVWEEIAEKMAERGYNRSAEQ 53

Query: 98  CRKRWGNLLVDFRKIKRWESQMKEEKQSFW 127
           C+++W NL   ++K K            F 
Sbjct: 54  CKEKWKNLKKKYKKEKESNKGSGSSWPFFE 83

This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins. Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	321
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	99.6
KOG4282	345	consensus Transcription factor GT-2 and related pr	99.29
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	98.36
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.85
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	97.13
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	97.11
PLN03212	249	Transcription repressor MYB5; Provisional	96.79
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	96.79
PLN03091	459	hypothetical protein; Provisional	96.34
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	96.05
smart00595	89	MADF subfamily of SANT domain.	95.09
PF10545	85	MADF_DNA_bdg: Alcohol dehydrogenase transcription	93.59
PLN03212	249	Transcription repressor MYB5; Provisional	93.54
PLN03091	459	hypothetical protein; Provisional	93.12
KOG0048	238	consensus Transcription factor, Myb superfamily [T	90.1
KOG1279	506	consensus Chromatin remodeling factor subunit and	84.72

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=99.60  E-value=6e-16  Score=120.97  Aligned_cols=75  Identities=31%  Similarity=0.511  Sum_probs=54.2

Q ss_pred             CCCCHHHHHHHHHHHhh--hhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 038571           39 PRWTRQETIVLIQGKRV--VEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWE  116 (321)
Q Consensus        39 p~WT~~EtLvLI~akre--~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~dYKkVr~wE  116 (321)
                      .+||.+||++||+++.+  ++..+..+.    ..   .....|+.|++.|..+||.|++.||+.||+||...|++++++.
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~----~~---~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~~   74 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGG----KK---RNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDRN   74 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH------SS-----HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhc----cc---cchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            68999999999999998  444454211    01   1235899999999999999999999999999999999999988


Q ss_pred             hhhh
Q 038571          117 SQMK  120 (321)
Q Consensus       117 r~~~  120 (321)
                      ...+
T Consensus        75 ~~~~   78 (90)
T PF13837_consen   75 KKSG   78 (90)
T ss_dssp             S---
T ss_pred             CCCC
Confidence            6553

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=99.29  E-value=1.8e-11  Score=118.22  Aligned_cols=72  Identities=29%  Similarity=0.563  Sum_probs=64.0

Q ss_pred             CCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 038571           38 NPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWES  117 (321)
Q Consensus        38 ~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~dYKkVr~wEr  117 (321)
                      .++|+..||++||.+|.+++..|..++     .    +.+.|+.|+..|..+||.|++.||+.||+||...||+.+.-..
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~-----~----k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~~  124 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGK-----L----KGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKKE  124 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhh-----h----cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcccC
Confidence            799999999999999998888876553     1    2359999999999999999999999999999999999988775


Q ss_pred             h
Q 038571          118 Q  118 (321)
Q Consensus       118 ~  118 (321)
                      .
T Consensus       125 ~  125 (345)
T KOG4282|consen  125 G  125 (345)
T ss_pred             C
Confidence            3

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=98.36  E-value=9.5e-07  Score=68.09  Aligned_cols=74  Identities=20%  Similarity=0.367  Sum_probs=55.0

Q ss_pred             CCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCC-CCChHHHHHHHHHHHHHHHHH
Q 038571           37 RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGV-NRRPVQCRKRWGNLLVDFRKI  112 (321)
Q Consensus        37 R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv-~Rs~~QCr~KW~NLl~dYKkV  112 (321)
                      |.|+||.+|..+||+.......-+......  ..........|..|+..+...|. .|++.||+++|.||...-|+.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~--~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk~   75 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSD--SVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKKK   75 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhccccc--HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            789999999999999976554433221101  11122245799999999999877 899999999999999877664

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.85  E-value=3.2e-05  Score=54.85  Aligned_cols=47  Identities=30%  Similarity=0.554  Sum_probs=37.9

Q ss_pred             CCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 038571           39 PRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLL  106 (321)
Q Consensus        39 p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl  106 (321)
                      ..||..|...|+++....-              .    ..|..|+.++-   ..|++.||+.+|.+|+
T Consensus         2 ~~Wt~eE~~~l~~~v~~~g--------------~----~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    2 GPWTEEEDEKLLEAVKKYG--------------K----DNWKKIAKRMP---GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             -SS-HHHHHHHHHHHHHST--------------T----THHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhC--------------C----cHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence            5799999999999877331              1    16999999997   6899999999999974

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=97.13  E-value=0.00074  Score=49.44  Aligned_cols=41  Identities=37%  Similarity=0.746  Sum_probs=32.6

Q ss_pred             CCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHH
Q 038571           41 WTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGN  104 (321)
Q Consensus        41 WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~N  104 (321)
                      ||..|...|+.+....      |             ..|..|+..|-    .|++.||+.||.+
T Consensus         1 WT~eEd~~L~~~~~~~------g-------------~~W~~Ia~~l~----~Rt~~~~~~r~~~   41 (60)
T PF13921_consen    1 WTKEEDELLLELVKKY------G-------------NDWKKIAEHLG----NRTPKQCRNRWRN   41 (60)
T ss_dssp             S-HHHHHHHHHHHHHH------T-------------S-HHHHHHHST----TS-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH------C-------------cCHHHHHHHHC----cCCHHHHHHHHHH
Confidence            9999999999987742      1             16999999973    8999999999999

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=97.11  E-value=0.0012  Score=44.56  Aligned_cols=46  Identities=35%  Similarity=0.694  Sum_probs=38.3

Q ss_pred             CCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 038571           39 PRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLL  106 (321)
Q Consensus        39 p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl  106 (321)
                      ..||..|...|+.+....-.                  ..|..|+.++.    .|++.+|+.+|.++.
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~------------------~~w~~Ia~~~~----~rt~~~~~~~~~~~~   47 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGK------------------NNWEKIAKELP----GRTAEQCRERWNNLL   47 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCc------------------CCHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence            57999999999998663210                  27999999986    899999999999875

>PLN03212 Transcription repressor MYB5; Provisional

Probab=96.79  E-value=0.0018  Score=61.60  Aligned_cols=51  Identities=29%  Similarity=0.497  Sum_probs=39.0

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571           36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV  107 (321)
Q Consensus        36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~  107 (321)
                      -+...||..|=-.|+++....      +            ...|..|+.++   |..|+++|||.||.|.|.
T Consensus        23 lKRg~WT~EEDe~L~~lV~ky------G------------~~nW~~IAk~~---g~gRT~KQCReRW~N~L~   73 (249)
T PLN03212         23 MKRGPWTVEEDEILVSFIKKE------G------------EGRWRSLPKRA---GLLRCGKSCRLRWMNYLR   73 (249)
T ss_pred             CcCCCCCHHHHHHHHHHHHHh------C------------cccHHHHHHhh---hcCCCcchHHHHHHHhhc
Confidence            345679999999998865522      0            12799999764   567999999999999774

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=96.79  E-value=0.0022  Score=42.72  Aligned_cols=44  Identities=34%  Similarity=0.768  Sum_probs=35.9

Q ss_pred             CCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 038571           40 RWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNL  105 (321)
Q Consensus        40 ~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NL  105 (321)
                      .||..|...|+.+-...-              .    ..|..|+..+.    .|++.||+.+|.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g--------------~----~~w~~Ia~~~~----~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYG--------------K----NNWEKIAKELP----GRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHC--------------c----CCHHHHHhHcC----CCCHHHHHHHHHHh
Confidence            499999999999866321              0    27999999985    39999999999887

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PLN03091 hypothetical protein; Provisional

Probab=96.34  E-value=0.0051  Score=62.73  Aligned_cols=52  Identities=29%  Similarity=0.480  Sum_probs=39.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 038571           34 KTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLL  106 (321)
Q Consensus        34 r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl  106 (321)
                      .+-|+..||..|=-.|+++....      |            ...|..|+..+   |..|+++|||.||.|.|
T Consensus        10 qklrKg~WTpEEDe~L~~~V~ky------G------------~~nWs~IAk~~---g~gRT~KQCRERW~NyL   61 (459)
T PLN03091         10 QKLRKGLWSPEEDEKLLRHITKY------G------------HGCWSSVPKQA---GLQRCGKSCRLRWINYL   61 (459)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHh------C------------cCCHHHHhhhh---ccCcCcchHhHHHHhcc
Confidence            44566789999999998876421      1            12799999764   56899999999999743

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=96.05  E-value=0.038  Score=43.51  Aligned_cols=74  Identities=20%  Similarity=0.368  Sum_probs=57.1

Q ss_pred             CCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHH-hCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 038571           40 RWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQ-YGVNRRPVQCRKRWGNLLVDFRKIKRWESQ  118 (321)
Q Consensus        40 ~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~-~Gv~Rs~~QCr~KW~NLl~dYKkVr~wEr~  118 (321)
                      +||...+..||.+-.+.-.....  .....+    ...-|..|...+.. .|...+..||+.||..|-..|+-++.-...
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~--~~~~~f----k~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~l~~~   74 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNR--PTNGGF----KKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKELRNH   74 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCC--CCCCCc----CHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            69999999999998755444221  011223    23589999998877 778889999999999999999999988875


Q ss_pred             h
Q 038571          119 M  119 (321)
Q Consensus       119 ~  119 (321)
                      +
T Consensus        75 s   75 (96)
T PF12776_consen   75 S   75 (96)
T ss_pred             C
Confidence            5

>smart00595 MADF subfamily of SANT domain

Probab=95.09  E-value=0.045  Score=42.69  Aligned_cols=39  Identities=23%  Similarity=0.463  Sum_probs=32.6

Q ss_pred             cchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhh
Q 038571           76 EPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWESQM  119 (321)
Q Consensus        76 ~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~dYKkVr~wEr~~  119 (321)
                      ...|..|+..|..     +..+|+.||.||-..|.+...-....
T Consensus        27 ~~aW~~Ia~~l~~-----~~~~~~~kw~~LR~~y~~e~~r~~~~   65 (89)
T smart00595       27 RKAWEEIAEELGL-----SVEECKKRWKNLRDRYRRELKRLQNG   65 (89)
T ss_pred             HHHHHHHHHHHCc-----CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4699999999965     99999999999999999876555433

>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats

Probab=93.59  E-value=0.16  Score=38.34  Aligned_cols=40  Identities=28%  Similarity=0.496  Sum_probs=34.4

Q ss_pred             CcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 038571           75 SEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKRWES  117 (321)
Q Consensus        75 ~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~dYKkVr~wEr  117 (321)
                      ....|..|+..|   |..-+..+|+.+|.+|-..|.+.+.-..
T Consensus        25 r~~aw~~Ia~~l---~~~~~~~~~~~~w~~Lr~~y~~~~~~~~   64 (85)
T PF10545_consen   25 REEAWQEIAREL---GKEFSVDDCKKRWKNLRDRYRRELKKIK   64 (85)
T ss_pred             HHHHHHHHHHHH---ccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456999999999   4445689999999999999999988886

The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.

>PLN03212 Transcription repressor MYB5; Provisional

Probab=93.54  E-value=0.15  Score=48.84  Aligned_cols=52  Identities=15%  Similarity=0.317  Sum_probs=41.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH
Q 038571           35 TARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDF  109 (321)
Q Consensus        35 ~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~dY  109 (321)
                      .-....||..|-..|+.....              .+     .+|..|+.++-    .|+.+||+.+|.+++..+
T Consensus        75 ~I~kgpWT~EED~lLlel~~~--------------~G-----nKWs~IAk~Lp----GRTDnqIKNRWns~LrK~  126 (249)
T PLN03212         75 SVKRGGITSDEEDLILRLHRL--------------LG-----NRWSLIAGRIP----GRTDNEIKNYWNTHLRKK  126 (249)
T ss_pred             hcccCCCChHHHHHHHHHHHh--------------cc-----ccHHHHHhhcC----CCCHHHHHHHHHHHHhHH
Confidence            345689999999999876431              11     28999999984    599999999999988743

>PLN03091 hypothetical protein; Provisional

Probab=93.12  E-value=0.2  Score=51.52  Aligned_cols=52  Identities=17%  Similarity=0.378  Sum_probs=42.3

Q ss_pred             CCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHH
Q 038571           37 RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRK  111 (321)
Q Consensus        37 R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~dYKk  111 (321)
                      ....||..|-..||...+..              +     .+|..|+.++.    .|+.+||+.+|..++..|.+
T Consensus        66 kKgpWT~EED~lLLeL~k~~--------------G-----nKWskIAk~LP----GRTDnqIKNRWnslLKKklr  117 (459)
T PLN03091         66 KRGTFSQQEENLIIELHAVL--------------G-----NRWSQIAAQLP----GRTDNEIKNLWNSCLKKKLR  117 (459)
T ss_pred             cCCCCCHHHHHHHHHHHHHh--------------C-----cchHHHHHhcC----CCCHHHHHHHHHHHHHHHHH
Confidence            46789999999999876521              1     28999999983    69999999999999986543

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=90.10  E-value=0.3  Score=45.60  Aligned_cols=54  Identities=24%  Similarity=0.499  Sum_probs=40.5

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHH-HHHH
Q 038571           36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLL-VDFR  110 (321)
Q Consensus        36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl-~dYK  110 (321)
                      .+++.||..|=..||+..+..=                  .-.|..|+..+   |..|..++||-||-|-| -+.|
T Consensus         7 ~~kGpWt~EED~~L~~~V~~~G------------------~~~W~~i~k~~---gl~R~GKSCRlRW~NyLrP~ik   61 (238)
T KOG0048|consen    7 LVKGPWTQEEDLTQIRSIKSFG------------------KHNGTALPKLA---GLRRCGKSCRLRWTNYLRPDLK   61 (238)
T ss_pred             ccCCCCChHHHHHHHHHHHHhC------------------CCCcchhhhhc---CCCccchHHHHHhhcccCCCcc
Confidence            4469999999999999866221                  11788888654   56899999999999944 4444

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=84.72  E-value=1.3  Score=46.38  Aligned_cols=49  Identities=27%  Similarity=0.516  Sum_probs=39.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 038571           34 KTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNL  105 (321)
Q Consensus        34 r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NL  105 (321)
                      .....++||.+|||.|+++.-   ..                .+.|..|+.++.    .|+..||-.|.=.|
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie---~y----------------~ddW~kVa~hVg----~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIE---MY----------------GDDWNKVADHVG----TKSQEQCILKFLRL  297 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHH---Hh----------------cccHHHHHhccC----CCCHHHHHHHHHhc
Confidence            345679999999999999753   11                148999999998    89999998887554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	321
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	3e-17

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Length = 86

 Score = 74.5 bits (183), Expect = 3e-17
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 37  RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPV 96
           R   W + ET  LI  +R ++              S  ++  W+ ++S  ++ G +R P 
Sbjct: 3   RAETWVQDETRSLIMFRRGMDGLFN---------TSKSNKHLWEQISSKMREKGFDRSPD 53

Query: 97  QCRKRWGNLLVDFRKIKRWESQMKEEKQSFW 127
            C  +W NLL +F+K K  +      K S++
Sbjct: 54  MCTDKWRNLLKEFKKAKHHDRGNGSAKMSYY 84

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	321
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	99.8
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	98.18
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	98.14
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	98.1
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	97.97
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	97.95
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	97.95
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	97.95
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	97.91
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	97.86
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	97.81
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	97.75
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	97.73
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	97.7
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	97.64
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	97.58
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	97.54
2cjj_A	93	Radialis; plant development, DNA-binding protein,	97.5
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	97.45
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	97.45
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	97.4
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	97.31
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	97.07
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	96.96
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	96.82
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	96.71
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	96.7
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	96.56
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	96.3
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	96.21
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	95.14
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	95.96
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	95.53
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	95.52
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	95.44
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	94.96
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	93.61
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	93.57
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	91.26
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	89.3
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	83.07
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	80.36

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=99.80  E-value=2.3e-20  Score=146.53  Aligned_cols=84  Identities=26%  Similarity=0.545  Sum_probs=72.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHH
Q 038571           35 TARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKR  114 (321)
Q Consensus        35 ~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~dYKkVr~  114 (321)
                      ++|.++||.+||++||+++++++..|..+.         ....+|++||+.|..+||+||+.||+.||+||...||+|++
T Consensus         1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~---------~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~   71 (86)
T 2ebi_A            1 KKRAETWVQDETRSLIMFRRGMDGLFNTSK---------SNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH   71 (86)
T ss_dssp             CCCSCCCCHHHHHHHHHHHHHHHHHHHHSS---------CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHccc---------cchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999988886532         23579999999999999999999999999999999999999


Q ss_pred             HHhhhhccccccc
Q 038571          115 WESQMKEEKQSFW  127 (321)
Q Consensus       115 wEr~~~~~~~SYW  127 (321)
                      +++.++.+.-+||
T Consensus        72 ~~~~sG~~~~~yf   84 (86)
T 2ebi_A           72 HDRGNGSAKMSYY   84 (86)
T ss_dssp             CCCCCCCCCCCCC
T ss_pred             hcccCCCCCCCCC
Confidence            9986633334454

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=98.18  E-value=1.9e-06  Score=64.46  Aligned_cols=51  Identities=20%  Similarity=0.434  Sum_probs=39.1

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCC-CCChHHHHHHHHHHHH
Q 038571           36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGV-NRRPVQCRKRWGNLLV  107 (321)
Q Consensus        36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv-~Rs~~QCr~KW~NLl~  107 (321)
                      .+...||..|-..|+++....      |        .    -.|..|+.++   ++ .|++.||++||.||+.
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~------G--------~----~~W~~Ia~~~---~~~~Rt~~qcr~Rw~nl~k   60 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKY------G--------E----GNWAAISKNY---PFVNRTAVMIKDRWRTMKR   60 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHH------C--------T----TCHHHHHHHS---CCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHcc------C--------C----CchHHHHhhc---CCCCCCHHHHHHHHHHHhc
Confidence            345679999999999986532      1        1    1799999864   23 5999999999999975

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=98.14  E-value=5.1e-06  Score=62.31  Aligned_cols=54  Identities=22%  Similarity=0.404  Sum_probs=43.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCC-CCChHHHHHHHHHHHH
Q 038571           33 SKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGV-NRRPVQCRKRWGNLLV  107 (321)
Q Consensus        33 ~r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv-~Rs~~QCr~KW~NLl~  107 (321)
                      .++.+...||..|-..|+++....      |        .    .+|..|+.++-   + .|++.||+.+|.|++.
T Consensus         5 ~~~~~r~~WT~eED~~L~~~v~~~------G--------~----~~W~~Ia~~~~---~~~Rt~~qcr~Rw~~~l~   59 (69)
T 1ity_A            5 HRARKRQAWLWEEDKNLRSGVRKY------G--------E----GNWSKILLHYK---FNNRTSVMLKDRWRTMKK   59 (69)
T ss_dssp             TCSSSCCCCCHHHHHHHHHHHHHH------C--------S----SCHHHHHHHSC---CSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHH------C--------C----CcHHHHHHHcC---cCCCCHHHHHHHHHHHcC
Confidence            355667889999999999986532      1        1    18999999873   4 7999999999999986

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=98.10  E-value=5.9e-06  Score=58.95  Aligned_cols=49  Identities=22%  Similarity=0.380  Sum_probs=39.5

Q ss_pred             CCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCC-CCChHHHHHHHHHHHH
Q 038571           38 NPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGV-NRRPVQCRKRWGNLLV  107 (321)
Q Consensus        38 ~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv-~Rs~~QCr~KW~NLl~  107 (321)
                      ...||..|-..|+++....      |        .    ..|..|+.++   ++ .|++.||+.+|.||+.
T Consensus         2 r~~WT~eEd~~L~~~v~~~------G--------~----~~W~~Ia~~~---~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKY------G--------E----GNWSKILLHY---KFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHH------C--------T----TCHHHHHHHS---CCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHH------C--------c----CCHHHHHHHc---CCCCCCHHHHHHHHHHHHc
Confidence            4689999999999986532      1        1    2899999987   34 5999999999999974

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=97.97  E-value=8.5e-06  Score=59.32  Aligned_cols=52  Identities=29%  Similarity=0.440  Sum_probs=41.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571           34 KTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV  107 (321)
Q Consensus        34 r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~  107 (321)
                      +.-....||..|-..|+++....      |        .    .+|..|+.+|-    .|++.||+.+|.|++.
T Consensus         4 p~~~k~~Wt~eED~~L~~~v~~~------G--------~----~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l~   55 (60)
T 2d9a_A            4 GSSGKVKWTHEEDEQLRALVRQF------G--------Q----QDWKFLASHFP----NRTDQQCQYRWLRVLS   55 (60)
T ss_dssp             CCCCCSCCCHHHHHHHHHHHHHT------C--------T----TCHHHHHHHCS----SSCHHHHHHHHHHTSC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHh------C--------C----CCHHHHHHHcc----CCCHHHHHHHHHHHcC
Confidence            34556789999999999986532      1        1    28999999974    5999999999999763

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=97.95  E-value=2.3e-05  Score=57.13  Aligned_cols=48  Identities=23%  Similarity=0.533  Sum_probs=37.9

Q ss_pred             CCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 038571           38 NPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLL  106 (321)
Q Consensus        38 ~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl  106 (321)
                      ...||..|-..|+++....      |        .    ..|..||.++   |..|++.||+.+|.|++
T Consensus         9 ~~~WT~eED~~L~~~v~~~------G--------~----~~W~~IA~~~---~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            9 DENWGADEELLLIDACETL------G--------L----GNWADIADYV---GNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHT------T--------T----TCHHHHHHHH---CSSCCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHH------C--------c----CCHHHHHHHH---CCCCCHHHHHHHHHHHc
Confidence            3569999999999986522      1        0    2899999988   33699999999999864

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=97.95  E-value=4.1e-05  Score=64.42  Aligned_cols=57  Identities=16%  Similarity=0.261  Sum_probs=44.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571           33 SKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV  107 (321)
Q Consensus        33 ~r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~  107 (321)
                      +++.....||..|...|+++....    ..              -+|..|+......=-.|+.+||++||.||+.
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~----G~--------------g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk   82 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHL----GT--------------GRWRDVKFRAFENVHHRTYVDLKDKWKTLVH   82 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHH----SS--------------SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHH----CC--------------CChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence            456667899999999999986632    11              1899999975421137999999999999986

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=97.95  E-value=9.5e-06  Score=57.35  Aligned_cols=48  Identities=35%  Similarity=0.649  Sum_probs=39.3

Q ss_pred             CCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571           38 NPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV  107 (321)
Q Consensus        38 ~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~  107 (321)
                      ...||..|-..|+++....      |        .    ..|..||.++-    .|++.||+.+|.|++.
T Consensus         3 ~~~Wt~eED~~L~~~v~~~------G--------~----~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L~   50 (52)
T 1guu_A            3 KTRWTREEDEKLKKLVEQN------G--------T----DDWKVIANYLP----NRTDVQCQHRWQKVLN   50 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHH------C--------S----SCHHHHHHTST----TCCHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHh------C--------C----CCHHHHHHHcC----CCCHHHHHHHHHHHcC
Confidence            5689999999999987632      1        1    17999999974    6999999999999873

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=97.91  E-value=2.1e-05  Score=57.58  Aligned_cols=50  Identities=22%  Similarity=0.467  Sum_probs=39.7

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571           36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV  107 (321)
Q Consensus        36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~  107 (321)
                      -....||..|-..|+++....              +.    ..|..||.++-    .|++.||+.+|.|++.
T Consensus         6 ~~~~~WT~eED~~L~~~v~~~--------------G~----~~W~~Ia~~~~----~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            6 SGDPSWTAQEEMALLEAVMDC--------------GF----GNWQDVANQMC----TKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHT--------------CT----TCHHHHHHHHT----TSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHH--------------Cc----CcHHHHHHHhC----CCCHHHHHHHHHHHcc
Confidence            345689999999999986521              10    28999999993    5999999999998764

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.86  E-value=1.8e-05  Score=59.33  Aligned_cols=52  Identities=21%  Similarity=0.429  Sum_probs=41.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571           34 KTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV  107 (321)
Q Consensus        34 r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~  107 (321)
                      +.-+...||..|-..|+.+....      |        .    ..|..|+.+|-    .|++.||+.+|.|.+.
T Consensus         5 ~~~k~~~Wt~eED~~L~~~v~~~------G--------~----~~W~~Ia~~l~----~Rt~~qcr~Rw~~~L~   56 (70)
T 2dim_A            5 SSGKGGVWRNTEDEILKAAVMKY------G--------K----NQWSRIASLLH----RKSAKQCKARWYEWLD   56 (70)
T ss_dssp             SCSTTCCCCHHHHHHHHHHHHHT------C--------S----SCHHHHHHHST----TCCHHHHHHHHHHTSC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHH------C--------c----CCHHHHHHHhc----CCCHHHHHHHHHHHcC
Confidence            34566799999999999886532      1        1    28999999985    6999999999999764

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=97.81  E-value=1.7e-05  Score=56.14  Aligned_cols=48  Identities=33%  Similarity=0.541  Sum_probs=38.6

Q ss_pred             CCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 038571           37 RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLL  106 (321)
Q Consensus        37 R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl  106 (321)
                      +...||..|-..|+++....      |        .    ..|..|+.+|-    .|++.||+.+|.|.+
T Consensus         2 ~k~~Wt~eED~~L~~~v~~~------G--------~----~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L   49 (52)
T 1gvd_A            2 IKGPWTKEEDQRLIKLVQKY------G--------P----KRWSVIAKHLK----GRIGKQCRERWHNHL   49 (52)
T ss_dssp             CCCSCCHHHHHHHHHHHHHH------C--------T----TCHHHHHTTST----TCCHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHH------C--------c----ChHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence            35689999999999986532      1        1    16999999973    699999999999876

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=97.75  E-value=6e-05  Score=58.57  Aligned_cols=49  Identities=22%  Similarity=0.502  Sum_probs=39.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 038571           34 KTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNL  105 (321)
Q Consensus        34 r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NL  105 (321)
                      .......||..|.+.|+++....              +     ..|..||.++-    .|++.||+.+|.+|
T Consensus        14 ~~~~~~~WT~eEd~~Ll~~v~~~--------------G-----~~W~~IA~~v~----~RT~~qcr~r~~~~   62 (79)
T 2yus_A           14 GASAGREWTEQETLLLLEALEMY--------------K-----DDWNKVSEHVG----SRTQDECILHFLRL   62 (79)
T ss_dssp             SSCCSCCCCHHHHHHHHHHHHHS--------------S-----SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred             ccccCCCcCHHHHHHHHHHHHHh--------------C-----CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence            34456799999999999986521              1     17999999984    59999999999987

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.73  E-value=8.8e-05  Score=54.95  Aligned_cols=51  Identities=24%  Similarity=0.537  Sum_probs=40.1

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Q 038571           36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFR  110 (321)
Q Consensus        36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~dYK  110 (321)
                      -....||..|-..|+++...              .+     .+|..||. +-  |  |++.||+.+|.+++..-.
T Consensus         7 ~~k~~WT~eED~~L~~~~~~--------------~g-----~~W~~Ia~-~~--g--Rt~~qcr~Rw~~~l~~~~   57 (66)
T 2din_A            7 GKKTEWSREEEEKLLHLAKL--------------MP-----TQWRTIAP-II--G--RTAAQCLEHYEFLLDKAA   57 (66)
T ss_dssp             SSCCCCCHHHHHHHHHHHHH--------------CT-----TCHHHHHH-HH--S--SCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHH--------------cC-----CCHHHHhc-cc--C--cCHHHHHHHHHHHhChHh
Confidence            44568999999999998331              11     28999999 53  5  999999999999998643

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.70  E-value=7.4e-05  Score=56.59  Aligned_cols=58  Identities=19%  Similarity=0.207  Sum_probs=42.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 038571           34 KTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVD  108 (321)
Q Consensus        34 r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~d  108 (321)
                      +.-....||..|-..|+++....    ..+     ..    ...+|..||.++-    .|+..||+.+|.|++..
T Consensus         4 p~~~~~~WT~eEd~~L~~~v~~~----g~~-----~~----~~~~W~~IA~~~~----~Rt~~qcr~r~~~~l~~   61 (75)
T 2yum_A            4 GSSGNQLWTVEEQKKLEQLLIKY----PPE-----EV----ESRRWQKIADELG----NRTAKQVASQVQKYFIK   61 (75)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHS----CCC-----SC----HHHHHHHHHHHHS----SSCHHHHHHHHHHHHGG
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHh----CCC-----CC----CcccHHHHHHHhC----CCCHHHHHHHHHHHHHH
Confidence            34456789999999999986522    110     00    1148999999984    59999999999887753

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=97.64  E-value=0.00012  Score=61.59  Aligned_cols=59  Identities=15%  Similarity=0.254  Sum_probs=45.5

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 038571           32 RSKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVD  108 (321)
Q Consensus        32 ~~r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~d  108 (321)
                      ..++.....||..|...|+++....    ..              -+|..|+......--.|+.+||++||.||+..
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~----G~--------------G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~   69 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHL----GT--------------GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT   69 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHH----GG--------------GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHH----CC--------------CCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            3456667799999999999986632    11              18999999875422379999999999999973

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=97.58  E-value=8.2e-05  Score=58.50  Aligned_cols=50  Identities=16%  Similarity=0.315  Sum_probs=38.2

Q ss_pred             CCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571           40 RWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV  107 (321)
Q Consensus        40 ~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~  107 (321)
                      .||..|...|+.+....    +.              -+|..|+..-...=-.|+.+||++||.||+.
T Consensus         2 ~WT~eEd~~L~~gv~k~----G~--------------g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk   51 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHL----GT--------------GRWRDVKMRAFDNADHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCHHHHHHHHHHHHHH----CS--------------SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH----CC--------------CCcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence            69999999999986632    11              1899999863211127999999999999987

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=97.54  E-value=8.5e-05  Score=60.93  Aligned_cols=84  Identities=14%  Similarity=0.248  Sum_probs=56.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Q 038571           31 DRSKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFR  110 (321)
Q Consensus        31 ~~~r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~dYK  110 (321)
                      ...++.....||..|...|+++....    ..              -+|..|+......=-.|+.+||++||.||+..- 
T Consensus         6 ~~~~rr~r~~WT~EEd~~L~~gV~k~----G~--------------g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~-   66 (105)
T 2aje_A            6 EDPQRRIRRPFSVAEVEALVQAVEKL----GT--------------GRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA-   66 (105)
T ss_dssp             ---CCCCCCSCCHHHHHHHHHHHHHH----CS--------------SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT-
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHh----CC--------------CChHHHHHHhccccCCCCHHHHHHHHHHHHhhc-
Confidence            34466677899999999999986632    11              189999985421003699999999999999721 


Q ss_pred             HHHHHHhhhhcccccccccCHHHHhhcCCCCCchHHHHHH
Q 038571          111 KIKRWESQMKEEKQSFWVMRNESRKQMKLPGYFDREVYDV  150 (321)
Q Consensus       111 kVr~wEr~~~~~~~SYW~M~~~eRke~~LP~~Fd~EVyda  150 (321)
                                       .+++..|+..-+|..|-.-|-++
T Consensus        67 -----------------~~~p~~~rg~~~P~~~l~rv~~~   89 (105)
T 2aje_A           67 -----------------KISPQQRRGEPVPQELLNRVLNA   89 (105)
T ss_dssp             -----------------TCCTTTTTCCSCCCHHHHHHHHH
T ss_pred             -----------------cCCcccccCCCCCHHHHHHHHHH
Confidence                             12333466778888776666653

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=97.50  E-value=0.00019  Score=57.54  Aligned_cols=58  Identities=21%  Similarity=0.449  Sum_probs=45.7

Q ss_pred             CCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHH
Q 038571           38 NPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKR  114 (321)
Q Consensus        38 ~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~dYKkVr~  114 (321)
                      ...||..|-..|+++-......            .   ..+|..||.++-    .|+.+||+.+|.+|+.+.+.|..
T Consensus         8 ~~~WT~eEd~~L~~al~~~~~~------------~---~~rW~~IA~~vp----GRT~~q~k~ry~~l~~dv~~ies   65 (93)
T 2cjj_A            8 GRPWSAKENKAFERALAVYDKD------------T---PDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIES   65 (93)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTT------------C---TTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCC------------C---CchHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHhhc
Confidence            4579999999999986632111            1   249999999984    49999999999999998777743

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=97.45  E-value=0.00033  Score=53.62  Aligned_cols=52  Identities=17%  Similarity=0.302  Sum_probs=41.5

Q ss_pred             CCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 038571           37 RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVD  108 (321)
Q Consensus        37 R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~d  108 (321)
                      ..+.||..|-..|+++......    +        .   ..+|+.||+++   |  |++.||+.+|..|..+
T Consensus         7 ~~~~WT~eE~k~fe~al~~~p~----~--------t---~~RW~~IA~~l---g--Rt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            7 GAPEWTEEDLSQLTRSMVKFPG----G--------T---PGRWEKIAHEL---G--RSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHSCT----T--------C---TTHHHHHHHHH---T--SCHHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCC----C--------C---CcHHHHHHHHh---C--CCHHHHHHHHHHHHHh
Confidence            3567999999999998763321    1        1   24999999997   4  9999999999999876

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=97.45  E-value=0.00033  Score=52.82  Aligned_cols=51  Identities=16%  Similarity=0.328  Sum_probs=41.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 038571           35 TARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVD  108 (321)
Q Consensus        35 ~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~d  108 (321)
                      .-....||..|-..|+++....              +     .+|..|+.+|-    .|+..||+.+|.+++..
T Consensus         6 ~~~~~~WT~eEd~~l~~~~~~~--------------G-----~~W~~Ia~~~~----~Rt~~q~k~r~~~~l~~   56 (72)
T 2cu7_A            6 SGYSVKWTIEEKELFEQGLAKF--------------G-----RRWTKISKLIG----SRTVLQVKSYARQYFKN   56 (72)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHHT--------------C-----SCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHHHHHHHH--------------C-----cCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence            3456789999999999976521              1     18999999884    59999999999998874

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=97.40  E-value=0.00011  Score=56.49  Aligned_cols=53  Identities=19%  Similarity=0.327  Sum_probs=41.7

Q ss_pred             CCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 038571           37 RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVD  108 (321)
Q Consensus        37 R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~d  108 (321)
                      ....||..|-..|+++....-    .+           ...+|..||.++-    .|+..||+.+|.+|+.|
T Consensus        17 ~~~~WT~eEd~~L~~al~~~g----~~-----------~~~rW~~IA~~vp----GRT~~qcr~Ry~~L~~d   69 (73)
T 2cqr_A           17 AEEPWTQNQQKLLELALQQYP----RG-----------SSDCWDKIARCVP----SKSKEDCIARYKLLVSG   69 (73)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSC----SS-----------SHHHHHHHGGGCS----SSCHHHHHHHHHHHHSS
T ss_pred             CCCCCCHHHHHHHHHHHHHcC----CC-----------CCchHHHHHHHcC----CCCHHHHHHHHHHHHHc
Confidence            446799999999999866321    00           1259999999884    59999999999999865

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=97.31  E-value=0.00045  Score=53.07  Aligned_cols=49  Identities=14%  Similarity=0.158  Sum_probs=39.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571           35 TARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV  107 (321)
Q Consensus        35 ~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~  107 (321)
                      .-....||..|-..|+++....      |             .+|..||.+|   |  |+.+||+.+|..|..
T Consensus        20 ~i~k~~wT~EED~~L~~l~~~~------G-------------~kW~~IA~~l---g--Rt~~q~knRw~~L~~   68 (73)
T 2llk_A           20 RNHVGKYTPEEIEKLKELRIKH------G-------------NDWATIGAAL---G--RSASSVKDRCRLMKD   68 (73)
T ss_dssp             CCCCCSSCHHHHHHHHHHHHHH------S-------------SCHHHHHHHH---T--SCHHHHHHHHHHCSC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHH------C-------------CCHHHHHHHh---C--CCHHHHHHHHHHHHH
Confidence            3456789999999999986532      1             2799999998   4  999999999988753

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=97.07  E-value=0.00052  Score=55.14  Aligned_cols=47  Identities=28%  Similarity=0.497  Sum_probs=38.1

Q ss_pred             CCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571           39 PRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV  107 (321)
Q Consensus        39 p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~  107 (321)
                      ..||..|-..|+.+....      |        .    ..|..|+.+|-    .|++.||+.+|.|.+.
T Consensus         2 ~~Wt~eED~~L~~~v~~~------g--------~----~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L~   48 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRY------G--------A----KDWIRISQLMI----TRNPRQCRERWNNYIN   48 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHH------C--------S----SCHHHHHHHTT----TSCHHHHHHHHHHHSS
T ss_pred             CCCCHHHHHHHHHHHHHH------C--------C----CCHHHHhhhcC----CCCHHHHHHHHHHHHc
Confidence            579999999999986532      1        1    17999999984    6999999999998664

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=96.96  E-value=0.00055  Score=54.46  Aligned_cols=48  Identities=31%  Similarity=0.526  Sum_probs=38.3

Q ss_pred             CCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 038571           37 RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLL  106 (321)
Q Consensus        37 R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl  106 (321)
                      +...||..|-..|+.+....      |        .    ..|..|+.+|-    .|++.||+.+|.|.+
T Consensus         3 ~k~~WT~eED~~L~~~v~~~------g--------~----~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l   50 (105)
T 1gv2_A            3 IKGPWTKEEDQRVIKLVQKY------G--------P----KRWSVIAKHLK----GRIGKQCRERWHNHL   50 (105)
T ss_dssp             CCSCCCHHHHHHHHHHHHHH------C--------T----TCHHHHHTTST----TCCHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHh------C--------C----CcHHHHhhhhc----CCCHHHHHHHHHhcc
Confidence            35689999999999886522      1        1    16999999873    699999999999965

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=96.82  E-value=0.0013  Score=54.36  Aligned_cols=50  Identities=32%  Similarity=0.561  Sum_probs=40.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 038571           34 KTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLL  106 (321)
Q Consensus        34 r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl  106 (321)
                      +..+...||..|-..|+.+....      |             ..|..|+.+|-    .|++.||+.+|.|.+
T Consensus         7 ~~~kk~~WT~eED~~L~~~v~~~------G-------------~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l   56 (126)
T 3osg_A            7 KAAKKQKFTPEEDEMLKRAVAQH------G-------------SDWKMIAATFP----NRNARQCRDRWKNYL   56 (126)
T ss_dssp             CBCSSCCCCHHHHHHHHHHHHHH------T-------------TCHHHHHHTCT----TCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHh------C-------------CCHHHHHHHcC----CCCHHHHHHHHhhhc
Confidence            45567789999999999887632      1             17999998864    699999999999976

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=96.71  E-value=0.0036  Score=50.18  Aligned_cols=49  Identities=29%  Similarity=0.580  Sum_probs=40.5

Q ss_pred             CCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 038571           37 RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVD  108 (321)
Q Consensus        37 R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~d  108 (321)
                      ....||..|-..|+.+....              +     .+|..|+.+|-    .|+.+||+.+|.+|+..
T Consensus        52 ~~~~WT~eEd~~L~~~~~~~--------------G-----~~W~~Ia~~l~----gRt~~~~k~rw~~l~r~  100 (107)
T 2k9n_A           52 RTDPWSPEEDMLLDQKYAEY--------------G-----PKWNKISKFLK----NRSDNNIRNRWMMIARH  100 (107)
T ss_dssp             TTCCCCHHHHHHHHHHHHHT--------------C-----SCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHHHHh--------------C-----cCHHHHHHHCC----CCCHHHHHHHHHHHHhh
Confidence            46789999999999976532              1     28999999883    59999999999999875

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=96.70  E-value=0.0015  Score=53.79  Aligned_cols=50  Identities=30%  Similarity=0.531  Sum_probs=39.2

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571           36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV  107 (321)
Q Consensus        36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~  107 (321)
                      -....||..|-..|+.+....      |        .    ..|..|+.+|-    .|++.||+.+|.|++.
T Consensus        25 ~~k~~Wt~eED~~L~~~v~~~------g--------~----~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l~   74 (128)
T 1h8a_C           25 LNKGPWTKEEDQRVIEHVQKY------G--------P----KRWSDIAKHLK----GRIGKQCRERWHNHLN   74 (128)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHT------C--------S----CCHHHHHHHSS----SCCHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHH------C--------C----CCHHHHHHHhc----CCcHHHHHHHHHHhcc
Confidence            345789999999999876521      1        1    16999999874    6999999999999763

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=96.56  E-value=0.0027  Score=52.40  Aligned_cols=50  Identities=20%  Similarity=0.466  Sum_probs=40.5

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 038571           36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVD  108 (321)
Q Consensus        36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~d  108 (321)
                      -....||..|-..|+.+....      |             .+|..|+.++-    .|+..||+.+|.+|+..
T Consensus        60 ~~~~~WT~eEd~~L~~~v~~~------G-------------~~W~~Ia~~l~----gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           60 ISHTPWTAEEDALLVQKIQEY------G-------------RQWAIIAKFFP----GRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             SCCSCCCHHHHHHHHHHHHHH------C-------------SCHHHHHTTST----TCCHHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHHHH------C-------------cCHHHHHHHcC----CCCHHHHHHHHHHHHHh
Confidence            345689999999999986533      1             17999998763    59999999999999874

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=96.30  E-value=0.0042  Score=49.30  Aligned_cols=48  Identities=17%  Similarity=0.479  Sum_probs=39.1

Q ss_pred             CCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571           37 RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV  107 (321)
Q Consensus        37 R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~  107 (321)
                      ....||..|-..|+.+....      |             .+|..|+.++-    .|+..||+.+|.+|+.
T Consensus        55 ~~~~Wt~eEd~~L~~~~~~~------G-------------~~W~~Ia~~l~----gRt~~~~k~rw~~~~~  102 (105)
T 1gv2_A           55 KKTSWTEEEDRIIYQAHKRL------G-------------NRWAEIAKLLP----GRTDNAIKNHWNSTMR  102 (105)
T ss_dssp             CCCCCCHHHHHHHHHHHHHH------S-------------SCHHHHHTTCT----TCCHHHHHHHHHHHTC
T ss_pred             cccCCCHHHHHHHHHHHHHh------C-------------CCHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence            45789999999999986532      1             27999998762    5999999999999875

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=96.21  E-value=0.0013  Score=54.55  Aligned_cols=48  Identities=29%  Similarity=0.488  Sum_probs=38.0

Q ss_pred             CCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571           38 NPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV  107 (321)
Q Consensus        38 ~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~  107 (321)
                      .+.||..|-..|+.+....      |        .    ..|..|+.+|-    .|++.||+.+|.|.+.
T Consensus         2 Kg~Wt~eED~~L~~~v~~~------g--------~----~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l~   49 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKEN------G--------P----QNWPRITSFLP----NRSPKQCRERWFNHLD   49 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHH------C--------S----CCGGGGTTSCT----TSCHHHHHHHHHHHTS
T ss_pred             CCCCCHHHHHHHHHHHHHh------C--------c----CCHHHHHHHHC----CCCHHHHHHHHhhccC
Confidence            4679999999999876532      1        0    16999998873    6999999999999764

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=95.14  E-value=0.00087  Score=52.77  Aligned_cols=52  Identities=17%  Similarity=0.238  Sum_probs=41.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH
Q 038571           35 TARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDF  109 (321)
Q Consensus        35 ~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~dY  109 (321)
                      .-....||..|-..||++....              +     .+|..||.+|-    .|+..||+.+|.|++..+
T Consensus        13 ~~~~~~WT~eEd~~l~~~~~~~--------------G-----~~W~~IA~~l~----gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A           13 NLYFQGWTEEEMGTAKKGLLEH--------------G-----RNWSAIARMVG----SKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            3345689999999999886532              1     27999999985    599999999999988754

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=95.96  E-value=0.0062  Score=51.82  Aligned_cols=50  Identities=30%  Similarity=0.482  Sum_probs=39.4

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571           36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV  107 (321)
Q Consensus        36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~  107 (321)
                      -....||..|-..|+.+....      |        .    ..|..||.+|-    .|++.||+.+|.|++.
T Consensus        56 ~~~~~Wt~eEd~~L~~~v~~~------g--------~----~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l~  105 (159)
T 1h89_C           56 LIKGPWTKEEDQRVIKLVQKY------G--------P----KRWSVIAKHLK----GRIGKQCRERWHNHLN  105 (159)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHH------C--------S----CCHHHHHHTST----TCCHHHHHHHHHHTTC
T ss_pred             cCCCCCChHHHHHHHHHHHHh------C--------c----ccHHHHHHHcC----CCCHHHHHHHHHHHhC
Confidence            346789999999999886532      1        1    16999999873    6999999999998763

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=95.53  E-value=0.0022  Score=54.63  Aligned_cols=49  Identities=35%  Similarity=0.647  Sum_probs=9.6

Q ss_pred             CCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571           37 RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV  107 (321)
Q Consensus        37 R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~  107 (321)
                      ....||..|-..|+.+....              +    ...|..|+.+|-    .|++.||+.+|.|.+.
T Consensus         5 ~k~~Wt~eED~~L~~~v~~~--------------g----~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l~   53 (159)
T 1h89_C            5 GKTRWTREEDEKLKKLVEQN--------------G----TDDWKVIANYLP----NRTDVQCQHRWQKVLN   53 (159)
T ss_dssp             ------------------------------------------------------------CHHHHHHTTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHh--------------C----CCCHHHHHHHcC----CCCHHHHHHHHHHccC
Confidence            35679999999999875421              0    127999999984    5999999999999764

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=95.52  E-value=0.008  Score=49.78  Aligned_cols=50  Identities=18%  Similarity=0.414  Sum_probs=39.6

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 038571           36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVD  108 (321)
Q Consensus        36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~d  108 (321)
                      -....||..|-..|+.+....              +     .+|..|+.++-    .|+..||+.+|.+++..
T Consensus        52 ~~~~~Wt~eEd~~L~~~~~~~--------------G-----~~W~~Ia~~l~----gRt~~~~k~rw~~~l~~  101 (131)
T 3zqc_A           52 VVKHAWTPEEDETIFRNYLKL--------------G-----SKWSVIAKLIP----GRTDNAIKNRWNSSISK  101 (131)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHS--------------C-----SCHHHHTTTST----TCCHHHHHHHHHHTTGG
T ss_pred             ccCCCCCHHHHHHHHHHHHHH--------------C-----cCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence            345689999999999875421              1     27999998764    59999999999998863

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=95.44  E-value=0.01  Score=48.79  Aligned_cols=49  Identities=16%  Similarity=0.478  Sum_probs=39.6

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571           36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV  107 (321)
Q Consensus        36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~  107 (321)
                      -....||..|-..|+.+....      |             .+|..|+.++-    .|+..||+.+|.+|+.
T Consensus        77 ~~~~~WT~eEd~~L~~~~~~~------G-------------~~W~~Ia~~l~----gRt~~~~k~r~~~~~~  125 (128)
T 1h8a_C           77 VKKTSWTEEEDRIIYQAHKRL------G-------------NRWAEIAKLLP----GRTDNAVKNHWNSTMR  125 (128)
T ss_dssp             SCCSCCCHHHHHHHHHHHHHH------C-------------SCHHHHGGGST----TCCHHHHHHHHHTTTT
T ss_pred             cccccCCHHHHHHHHHHHHHH------C-------------cCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence            345789999999999986532      1             28999998763    5999999999999875

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=94.96  E-value=0.022  Score=43.81  Aligned_cols=52  Identities=17%  Similarity=0.344  Sum_probs=39.8

Q ss_pred             CCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 038571           38 NPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVD  108 (321)
Q Consensus        38 ~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~d  108 (321)
                      ...||..|...|.++.......            .   ..+|+.||+++-    .|++.+|+.+|.-|...
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~------------t---p~rWe~IA~~V~----gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKH------------K---PGFWSEVAAAVG----SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSS------------S---SSHHHHHHHHTT----TSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCC------------C---ccHHHHHHHHcC----CCCHHHHHHHHHHHHhc
Confidence            4579999999999986633211            1   249999999874    39999999999888543

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=93.61  E-value=0.039  Score=51.27  Aligned_cols=55  Identities=20%  Similarity=0.340  Sum_probs=40.8

Q ss_pred             CCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 038571           37 RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVD  108 (321)
Q Consensus        37 R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~d  108 (321)
                      ....||..|=..|+++.+..-.+    |       .  ....|..||.+|-    .|+.+||+.+|.++|..
T Consensus         7 ~k~~FT~EED~~Ile~v~k~Gn~----r-------~--ghk~W~~IAk~Lp----GRT~nsIRnRw~~~L~~   61 (246)
T 1ign_A            7 NKASFTDEEDEFILDVVRKNPTR----R-------T--THTLYDEISHYVP----NHTGNSIRHRFRVYLSK   61 (246)
T ss_dssp             -CCCCCHHHHHHHHHHHHTSGGG----T-------T--CSHHHHHHTTTST----TSCHHHHHHHHHHTTGG
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcC----c-------c--ccccHHHHHHHcC----CCCHHHHHHHHHHHHhh
Confidence            34589999999999987753221    1       0  0125999999876    69999999999998753

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.57  E-value=0.17  Score=36.77  Aligned_cols=48  Identities=15%  Similarity=0.164  Sum_probs=37.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHH
Q 038571           33 SKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWG  103 (321)
Q Consensus        33 ~r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~  103 (321)
                      ..++....||..|...|+++....      |             ..|..|+.++-    .|+..||...|-
T Consensus         7 ~~r~~~~~WT~eE~~~F~~~~~~~------g-------------k~w~~Ia~~l~----~rt~~~~v~~Yy   54 (61)
T 2eqr_A            7 GDRQFMNVWTDHEKEIFKDKFIQH------P-------------KNFGLIASYLE----RKSVPDCVLYYY   54 (61)
T ss_dssp             CCCSCCCSCCHHHHHHHHHHHHHS------T-------------TCHHHHHHHCT----TSCHHHHHHHHH
T ss_pred             cccccCCCCCHHHHHHHHHHHHHh------C-------------CCHHHHHHHcC----CCCHHHHHHHHH
Confidence            344677899999999999986632      1             17999997764    699999998774

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=91.26  E-value=0.27  Score=36.75  Aligned_cols=51  Identities=20%  Similarity=0.415  Sum_probs=38.7

Q ss_pred             CCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571           37 RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV  107 (321)
Q Consensus        37 R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~  107 (321)
                      ....||..|.-.|++.....              +     .+|..|...-. .=-.|+...-++||.||+.
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~--------------G-----~~W~~I~~~y~-f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTM--------------G-----NHWNSILWSFP-FQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHH--------------C-----SCHHHHHHHSC-CCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHH--------------h-----HhHHHHHHhCC-CccCcccchHHHHHHHHHh
Confidence            45689999999999986532              1     18999985321 1127999999999999985

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=89.30  E-value=0.55  Score=43.36  Aligned_cols=47  Identities=26%  Similarity=0.423  Sum_probs=37.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHH
Q 038571           35 TARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGN  104 (321)
Q Consensus        35 ~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~N  104 (321)
                      .....+||..|.+.|+++-+..      |+             .|..|+..+-    .|+..||+.-|-|
T Consensus       130 ~k~s~~WTeEE~~lFleAl~kY------GK-------------DW~~IAk~Vg----TKT~~QcKnfY~~  176 (235)
T 2iw5_B          130 QKCNARWTTEEQLLAVQAIRKY------GR-------------DFQAISDVIG----NKSVVQVKNFFVN  176 (235)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHH------SS-------------CHHHHHHHHS----SCCHHHHHHHHHH
T ss_pred             CccCCCCCHHHHHHHHHHHHHH------Cc-------------CHHHHHHHcC----CCCHHHHHHHHHH
Confidence            3456799999999999986632      11             6999999874    6999999998853

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=83.07  E-value=1.9  Score=43.46  Aligned_cols=44  Identities=25%  Similarity=0.448  Sum_probs=35.5

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHH
Q 038571           36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRW  102 (321)
Q Consensus        36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW  102 (321)
                      ....+||..|++.|+++.+..      |+             -|..|+..+.    .|+..||+.-+
T Consensus       378 ~~~~~WT~eE~~~f~~al~~y------Gk-------------dw~~IA~~Vg----TKT~~Qvk~fy  421 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKY------GR-------------DFQAISDVIG----NKSVVQVKNFF  421 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHH------TT-------------CHHHHHHHHS----SCCHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHH------Cc-------------CHHHHHHHhC----CCCHHHHHHHH
Confidence            457899999999999987632      11             6999999975    79999999754

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=80.36  E-value=19  Score=28.93  Aligned_cols=65  Identities=18%  Similarity=0.269  Sum_probs=50.3

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571           28 NTDDRSKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV  107 (321)
Q Consensus        28 ~~~~~~r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~  107 (321)
                      +.+-.......--||+.|=.+++.+-++.      |      .    ....|..|+..+.    +|+++|-..|..-|+.
T Consensus        23 N~~~~s~Ge~VvlWTRe~DR~IL~~cQ~~------G------~----s~~tFa~iA~~L~----Nks~nqV~~RFq~Lm~   82 (95)
T 1ug2_A           23 NSKVSSTGEKVVLWTREADRVILTMCQEQ------G------A----QPHTFSVISQQLG----NKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             CCCCCCCCCCCSSSCHHHHHHHHHHHHHT------T------S----CTTTHHHHHHHHS----SCCHHHHHHHHHHHHH
T ss_pred             cceecCCCCEEEEeccccCHHHHHHHHhc------C------C----ChhHHHHHHHHHc----cCCHHHHHHHHHHHHH
Confidence            34455667778899999998888876621      1      0    1248999999986    7999999999999999


Q ss_pred             HHHHH
Q 038571          108 DFRKI  112 (321)
Q Consensus       108 dYKkV  112 (321)
                      =|.+-
T Consensus        83 Lf~~~   87 (95)
T 1ug2_A           83 LFHTA   87 (95)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            88763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	321
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	98.0
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	97.98
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	97.94
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	97.94
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	97.89
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	97.84
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	97.77
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.32
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	97.18
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	97.05
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	97.04
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	96.67
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	96.39
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	94.68
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	90.65

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=98.00  E-value=5.5e-06  Score=59.72  Aligned_cols=56  Identities=21%  Similarity=0.430  Sum_probs=45.3

Q ss_pred             CCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHH
Q 038571           39 PRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIK  113 (321)
Q Consensus        39 p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~dYKkVr  113 (321)
                      ..||..|-..|+++....-    .+        +   ..+|..||.++-    .|++.||+.+|..|+.+.|.|.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~----~~--------~---~~~W~~Ia~~l~----gRt~~qc~~r~~~L~~dik~ie   57 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYD----KD--------T---PDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIE   57 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSC----TT--------C---TTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHC----CC--------C---chHHHHHHHHcC----CCCHHHHHHHHHHHHHHhhccc
Confidence            3699999999999875321    11        1   248999999996    5999999999999999988875

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.98  E-value=4.4e-06  Score=63.44  Aligned_cols=50  Identities=16%  Similarity=0.315  Sum_probs=41.2

Q ss_pred             CCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571           40 RWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV  107 (321)
Q Consensus        40 ~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~  107 (321)
                      .||..|...|+.+....    ..              -.|..|+..+...+-.|++.||++||.||+.
T Consensus         2 ~WT~eEd~~L~~~V~~~----G~--------------~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~   51 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHL----GT--------------GRWRDVKMRAFDNADHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCHHHHHHHHHHHHHH----CS--------------SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH----Cc--------------ccHHHHHHHHHhhccCCCHHHHHHHHHHHhh
Confidence            69999999999985422    11              1799999988766778999999999999995

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=6.2e-06  Score=56.48  Aligned_cols=45  Identities=24%  Similarity=0.463  Sum_probs=36.9

Q ss_pred             CCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 038571           39 PRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNL  105 (321)
Q Consensus        39 p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NL  105 (321)
                      |+||..|-..|+++....      |        .    ..|..||.++-    .|++.||+.+|.|.
T Consensus         2 ~~Wt~eEd~~L~~~v~~~------G--------~----~nW~~Ia~~~~----~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           2 PSWTAQEEMALLEAVMDC------G--------F----GNWQDVANQMC----TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSSCHHHHHHHHHHHHHT------C--------T----TCHHHHHHHHT----TSCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHH------C--------C----ccHHHHHHHcC----CCCHHHHHHHHHHh
Confidence            689999999999987621      1        1    16999999986    69999999999874

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=5.9e-06  Score=57.65  Aligned_cols=49  Identities=24%  Similarity=0.370  Sum_probs=37.9

Q ss_pred             CCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 038571           38 NPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLL  106 (321)
Q Consensus        38 ~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl  106 (321)
                      ...||..|-..|+++....      |        .    ..|..|+....  ...|++.||++||.||.
T Consensus         2 r~~WT~eED~~L~~~v~~~------G--------~----~~W~~I~~~~~--~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKY------G--------E----GNWSKILLHYK--FNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHH------C--------T----TCHHHHHHHSC--CSSCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH------C--------C----CCHHHHHhhcC--CCCCCHHHHHHHHHHHH
Confidence            4579999999999987633      1        1    17999986532  23699999999999986

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=7.3e-06  Score=57.74  Aligned_cols=50  Identities=22%  Similarity=0.432  Sum_probs=38.0

Q ss_pred             CCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571           38 NPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV  107 (321)
Q Consensus        38 ~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~  107 (321)
                      ...||..|-..|+.+....      |        .    -.|..|+....-  -.|++.||++||.||+.
T Consensus         2 r~~WT~eEd~~L~~~V~~~------G--------~----~~W~~I~~~~~~--~~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           2 KQKWTVEESEWVKAGVQKY------G--------E----GNWAAISKNYPF--VNRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CCCCCHHHHHHHHHHHHHH------C--------T----TCHHHHHHHSCC--SSCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHh------C--------C----ChHHHHHhhcCC--CCcCHHHHHHHHHHHhc
Confidence            3479999999999987632      1        1    169999875321  26999999999999875

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.84  E-value=8.6e-06  Score=56.23  Aligned_cols=46  Identities=37%  Similarity=0.687  Sum_probs=37.5

Q ss_pred             CCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 038571           39 PRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLL  106 (321)
Q Consensus        39 p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl  106 (321)
                      .+||..|-..|+.+....      |        .    ..|..||.+|-    .|++.||+.+|.|.|
T Consensus         2 ~~WT~eED~~L~~~v~~~------g--------~----~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L   47 (50)
T d1guua_           2 TRWTREEDEKLKKLVEQN------G--------T----DDWKVIANYLP----NRTDVQCQHRWQKVL   47 (50)
T ss_dssp             CCCCHHHHHHHHHHHHHH------C--------S----SCHHHHHHTST----TCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH------C--------C----CCHHHHHHHHC----CCCHHHHHHHHHhhC
Confidence            579999999999976532      1        1    16999999884    599999999999976

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=8.6e-06  Score=56.87  Aligned_cols=47  Identities=34%  Similarity=0.599  Sum_probs=38.0

Q ss_pred             CCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 038571           38 NPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLL  106 (321)
Q Consensus        38 ~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl  106 (321)
                      .+.||.+|-..|+++....    .          .    ..|..||.+|-    .|++.||+.+|.|.|
T Consensus         3 rg~WT~eED~~L~~~v~~~----g----------~----~~W~~Ia~~l~----~Rt~~qc~~Rw~~~L   49 (52)
T d1gvda_           3 KGPWTKEEDQRLIKLVQKY----G----------P----KRWSVIAKHLK----GRIGKQCRERWHNHL   49 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHH----C----------T----TCHHHHHTTST----TCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHH----C----------C----CCHHHHHHHHC----CCCHHHHHHHHHhhC
Confidence            4679999999999987632    1          1    17999999884    799999999999854

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00011  Score=51.97  Aligned_cols=51  Identities=20%  Similarity=0.341  Sum_probs=38.9

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 038571           36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNL  105 (321)
Q Consensus        36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NL  105 (321)
                      .....||..|-..|+++....-    .+           ...+|..||.++-    .|++.||+.+|..|
T Consensus        10 ~~~~~WT~eEd~~L~~~v~~~~----~~-----------~~~~W~~IA~~l~----~Rt~~qc~~R~~~L   60 (60)
T d2cqra1          10 SAEEPWTQNQQKLLELALQQYP----RG-----------SSDCWDKIARCVP----SKSKEDCIARYKLL   60 (60)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHSC----SS-----------SHHHHHHHGGGCS----SSCHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHHcC----Cc-----------cchHHHHHHHHcC----CCCHHHHHHHHHHC
Confidence            3445699999999999876421    11           1248999998874    69999999999876

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=0.0012  Score=51.53  Aligned_cols=59  Identities=19%  Similarity=0.318  Sum_probs=47.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHH
Q 038571           33 SKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRK  111 (321)
Q Consensus        33 ~r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~dYKk  111 (321)
                      .+.....-||+.|=.+|+...++.-                +....|..|+.+|.    +|+++||+.||..||.-|.+
T Consensus        28 s~G~~~~~WTrEEDriIL~~~q~~G----------------~~~~tw~~Ia~~L~----~Rs~~qvr~Rf~~Lm~lf~~   86 (95)
T d1ug2a_          28 STGEKVVLWTREADRVILTMCQEQG----------------AQPHTFSVISQQLG----NKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTT----------------SCTTTHHHHHHHHS----SCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccCCcCHHHHHHHHHHHHHcC----------------CcHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHHHH
Confidence            3445677799999999998766332                11348999999997    79999999999999998865

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00026  Score=48.21  Aligned_cols=45  Identities=18%  Similarity=0.500  Sum_probs=38.0

Q ss_pred             CCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 038571           39 PRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLL  106 (321)
Q Consensus        39 p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl  106 (321)
                      ..||..|-..|+....+.      |             .+|..|+.++-    .|+.+||+-+|.+++
T Consensus         2 ~~WT~eED~~L~~~v~~~------G-------------~~W~~Ia~~~~----gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           2 TSWTEEEDRIIYQAHKRL------G-------------NRWAEIAKLLP----GRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCHHHHHHHHHHHHHH------S-------------SCHHHHHTTCT----TCCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHH------h-------------hHHHHHHhHcC----CCCHHHHHHHHHHHc
Confidence            579999999999987742      1             28999999874    699999999999986

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00058  Score=48.53  Aligned_cols=48  Identities=17%  Similarity=0.347  Sum_probs=38.6

Q ss_pred             CCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 038571           38 NPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVD  108 (321)
Q Consensus        38 ~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~d  108 (321)
                      +.+||..|-..|+++....              +     ..|..|+.++-    .||+.||+.+|.+++..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~--------------G-----~~W~~Ia~~~~----~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKF--------------G-----RRWTKISKLIG----SRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHT--------------C-----SCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHh--------------c-----chHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence            3579999999999986522              1     17999999885    69999999999877653

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.00049  Score=52.44  Aligned_cols=52  Identities=19%  Similarity=0.299  Sum_probs=38.9

Q ss_pred             CCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571           39 PRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV  107 (321)
Q Consensus        39 p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~  107 (321)
                      ..||..|=-.|+.+.+..-.+          . .  ....|..||.+|-    .|++.||+.+|.|.+.
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~----------~-~--~~~~W~~IA~~lp----gRt~~qcr~Rw~~~L~   53 (86)
T d1igna1           2 ASFTDEEDEFILDVVRKNPTR----------R-T--THTLYDEISHYVP----NHTGNSIRHRFRVYLS   53 (86)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGG----------T-T--CSHHHHHHTTTST----TSCHHHHHHHHHHTTG
T ss_pred             CCCCHHHHHHHHHHHHHhCcC----------c-C--CccCHHHHHHHcC----CCCHHHHHHHHHHHcC
Confidence            589999999999876533111          0 1  1237999998874    5999999999999765

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0026  Score=45.18  Aligned_cols=51  Identities=24%  Similarity=0.370  Sum_probs=40.3

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH
Q 038571           36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDF  109 (321)
Q Consensus        36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~dY  109 (321)
                      ...+.||..|...|+.+....      |             ..|..|+.++-    .|++.||+.+|-++...+
T Consensus         3 k~~~~WT~eE~~~f~~~~~~~------G-------------~~w~~Ia~~~~----~kt~~q~~~~y~~~~k~~   53 (65)
T d2iw5b1           3 KCNARWTTEEQLLAVQAIRKY------G-------------RDFQAISDVIG----NKSVVQVKNFFVNYRRRF   53 (65)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHH------S-------------SCHHHHHHHHS----SCCHHHHHHHHHHTTTTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHh------C-------------chHHHHHHHcC----CCCHHHHHHHHHHHHhhc
Confidence            345789999999999986632      1             16999999985    699999999998876543

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.036  Score=39.23  Aligned_cols=48  Identities=21%  Similarity=0.407  Sum_probs=35.3

Q ss_pred             CCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 038571           38 NPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNL  105 (321)
Q Consensus        38 ~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NL  105 (321)
                      ++.||..|...|..+-...    -.|        .   ..+|+.|++++   |  |+..||..+-..|
T Consensus         1 a~eWT~ee~~~le~Al~~~----P~g--------t---~~RW~~IA~~v---g--kt~~ev~~~~k~l   48 (59)
T d2cqqa1           1 APEWTEEDLSQLTRSMVKF----PGG--------T---PGRWEKIAHEL---G--RSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHS----CTT--------C---TTHHHHHHHHH---T--SCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHC----CCC--------C---cHHHHHHHHHH---C--CCHHHHHHHHHHH
Confidence            4789999999999986522    111        1   25999999998   4  9999997664333

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.65  E-value=0.056  Score=38.30  Aligned_cols=48  Identities=13%  Similarity=0.167  Sum_probs=37.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHH
Q 038571           34 KTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGN  104 (321)
Q Consensus        34 r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~N  104 (321)
                      .+.....||..|...|+.+.+..              +     ..|..|+.++-    .|+..||+..|-+
T Consensus        13 ~~~~~~~WT~eE~~~f~~~~~~~--------------G-----~~w~~Ia~~~~----~rt~~q~~~~yy~   60 (68)
T d1xc5a1          13 DRQVMNMWSEQEKETFREKFMQH--------------P-----KNFGLIASFLE----RKTVAECVLYYYL   60 (68)
T ss_dssp             STTTTTCCCTTTHHHHHHHHHHT--------------T-----SCSSSHHHHTT----TSCHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHHHHHH--------------C-----CcHHHHHHHcC----CCCHHHHHHHHHH
Confidence            34455679999999999987632              1     16999998774    6999999999853