Citrus Sinensis ID: 038593

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVKKL
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHcccEEEEEcEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccHHHHcccccccccccHHHHHHHHHHcccEEEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcc
Coil and Loop (DISEMBL)
glieesklkssnfpiyapyvdEVKQVIERegsfdihqlETFHVSWLEgfvendnegldkyargkyvtRHVRAVGESLLssicgddaIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVKKL
Flexible Loop (DISEMBL)
glieesklkssnfpiyapYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGEsllssicgddaIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVKKL
Low Complexity Region (SEG)
GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVKKL
Disordered region (IsUnstruct)
************FPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLV***
Disordered Region (DISOPRED)
GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGF*******LDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVKKL
Disordered Region (DISEMBL)
GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVKKL
Disordered Region (DISPRO)
GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFV**DNEGLDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVKKL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVKKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
A4GE69	372	7-methylxanthosine syntha	N/A	no	0.934	0.306	0.446	4e-18
Q9AVK0	372	7-methylxanthosine syntha	N/A	no	0.934	0.306	0.446	4e-18
Q8H0D3	384	Caffeine synthase 1 OS=Co	N/A	no	0.975	0.309	0.403	5e-17
A4GE70	384	3,7-dimethylxanthine N-me	N/A	no	0.975	0.309	0.403	6e-17
Q9AVK1	385	Probable caffeine synthas	N/A	no	0.975	0.309	0.403	9e-17
Q8H0D2	384	3,7-dimethylxanthine N-me	N/A	no	0.975	0.309	0.403	2e-16
Q8H0G0	384	Theobromine synthase 2 OS	N/A	no	0.975	0.309	0.379	5e-16
Q84PP7	384	Monomethylxanthine methyl	N/A	no	0.975	0.309	0.379	6e-16
Q9AVL9	385	Probable caffeine synthas	N/A	no	0.975	0.309	0.387	1e-15
Q9AVJ9	378	Monomethylxanthine methyl	N/A	no	0.975	0.314	0.382	5e-15

>sp|A4GE69|XMT1_COFCA 7-methylxanthosine synthase 1 OS=Coffea canephora GN=XMT1 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 77/121 (63%), Gaps = 7/121 (5%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKY 60
           G +EE KL S N P+Y P  +EVK ++E EGSF+I  LETF V +  GF  +     D++
Sbjct: 253 GHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETFKVLYDAGFSID-----DEH 307

Query: 61  ARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVK 120
            + +YV   VRAV E +L+S  G +AI+ +I+ RFA K   ++L  G+G + NL+ISL K
Sbjct: 308 IKAEYVASSVRAVYEPILASHFG-EAIIPDIFHRFA-KHAAKVLPLGKGFYNNLIISLAK 365

Query: 121 K 121
           K
Sbjct: 366 K 366

Involved in the biosynthesis of caffeine. Specific for xanthosine. Cannot use xanthosine 5'-monophosphate (XMP) as substrate. Directly produces 7-methylxanthine, and therefore the methyl transfer and nucleoside cleavage may be coupled. Catalyzes the 7-N-methylation of xanthosine, but does not have 1-N- or 3-N-methylation activity.
Coffea canephora (taxid: 49390)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 5EC: 8

>sp|Q9AVK0|XMT1_COFAR 7-methylxanthosine synthase 1 OS=Coffea arabica GN=XMT1 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 77/121 (63%), Gaps = 7/121 (5%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKY 60
           G +EE KL S N P+Y P  +EVK ++E EGSF+I  LETF V +  GF  +     D++
Sbjct: 253 GHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETFKVLYDAGFSID-----DEH 307

Query: 61  ARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVK 120
            + +YV   VRAV E +L+S  G +AI+ +I+ RFA K   ++L  G+G + NL+ISL K
Sbjct: 308 IKAEYVASSVRAVYEPILASHFG-EAIIPDIFHRFA-KHAAKVLPLGKGFYNNLIISLAK 365

Query: 121 K 121
           K
Sbjct: 366 K 366

Involved in the biosynthesis of caffeine. Specific for xanthosine and could not use xanthosine 5'-monophosphate (XMP) as substrate. Catalyzes the 7-N-methylation activity of xanthosine, but does not have 1-N- or 3-N-methylation activity.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 8

>sp|Q8H0D3|CCS1_COFAR Caffeine synthase 1 OS=Coffea arabica GN=CCS1 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 82/129 (63%), Gaps = 10/129 (7%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGF-VENDNEG--- 56
           G +EE KL S N PIYAP  +EVK+++E EGSF+I  LETF+  +  GF +++D +G   
Sbjct: 252 GHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFYAPYDAGFSIDDDYQGRSH 311

Query: 57  ----LDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFA 112
                D++AR  +V   VR++ E +L+S  G +AI+ ++  R A K   ++L  G+G + 
Sbjct: 312 SPVSCDEHARAAHVASVVRSIYEPILASHFG-EAILPDLSHRIA-KNAAKVLRSGKGFYD 369

Query: 113 NLLISLVKK 121
           +++ISL KK
Sbjct: 370 SVIISLAKK 378

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of theobromine to caffeine. Has 1-N-methylation activity.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|A4GE70|DXMT1_COFCA 3,7-dimethylxanthine N-methyltransferase OS=Coffea canephora GN=DXMT1 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 82/129 (63%), Gaps = 10/129 (7%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGF-VENDNEG--- 56
           G +EE KL S N PIYAP  +EVK+++E EGSF+I  LETF+  +  GF +++D +G   
Sbjct: 252 GHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQGRSH 311

Query: 57  ----LDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFA 112
                D++AR  +V   VR++ E +L+S  G +AI+ ++  R A K   ++L  G+G + 
Sbjct: 312 SPVSCDEHARAAHVASVVRSIYEPILASHFG-EAILPDLSHRIA-KNAAKVLRSGKGFYD 369

Query: 113 NLLISLVKK 121
           +++ISL KK
Sbjct: 370 SVIISLAKK 378

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine to theobromine and of theobromine to caffeine, but no sequential conversion of 7-methylxanthine to caffeine was detected.

Coffea canephora (taxid: 49390)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|Q9AVK1|CS3_COFAR Probable caffeine synthase 3 OS=Coffea arabica GN=CS3 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 80/129 (62%), Gaps = 10/129 (7%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDN------ 54
           G +EE KL S N PIYA  V+E+K ++E EGSF+I  LETF + +  GF  +D+      
Sbjct: 253 GHLEEEKLDSFNVPIYAASVEELKCIVEEEGSFEILYLETFKLRYDAGFSIDDDCQVRSH 312

Query: 55  --EGLDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFA 112
             E  D++AR  +V   +R+V E +L++  G +AI+ +I+ RFA     +++  G+G + 
Sbjct: 313 SPEYSDEHARAAHVASLLRSVYEPILANHFG-EAIIPDIFHRFATNAA-KVIRLGKGFYN 370

Query: 113 NLLISLVKK 121
           NL+ISL KK
Sbjct: 371 NLIISLAKK 379

May be involved in the biosynthesis of caffeine.

Coffea arabica (taxid: 13443)

>sp|Q8H0D2|DXMT1_COFAR 3,7-dimethylxanthine N-methyltransferase OS=Coffea arabica GN=DXMT1 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 81/129 (62%), Gaps = 10/129 (7%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGF-VENDNEG--- 56
           G +EE KL S N PIYAP  +EVK ++E EGSF+I  LETF V +  GF +++D +G   
Sbjct: 252 GHLEEEKLDSFNVPIYAPSTEEVKCIVEEEGSFEILYLETFKVPYDAGFSIDDDYQGRSH 311

Query: 57  ----LDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFA 112
                D++AR  +V   VR++ E +++S  G +AI+ ++  R A K   ++L  G+G + 
Sbjct: 312 SPVSCDEHARAAHVASVVRSIFEPIVASHFG-EAILPDLSHRIA-KNAAKVLRSGKGFYD 369

Query: 113 NLLISLVKK 121
           +++ISL KK
Sbjct: 370 SVIISLAKK 378

Involved in the biosynthesis of caffeine. Catalyzes the conversion of paraxanthine to caffeine. Can also convert 7-methylxanthine to theobromine and theobromine to caffeine, but no sequential conversion of 7-methylxanthine to caffeine was detected.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|Q8H0G0|CTS2_COFAR Theobromine synthase 2 OS=Coffea arabica GN=CTS2 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 77/129 (59%), Gaps = 10/129 (7%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGL--- 57
           G +EE KL S N P + P  +EVK ++E EGSF+I  LETF   +  GF  +D+  +   
Sbjct: 252 GHLEEEKLASFNLPFFTPSAEEVKCIVEEEGSFEILYLETFKAHYDAGFSIDDDYPVRSH 311

Query: 58  -----DKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFA 112
                D++ + +YV   +R+V E +L+S  G +AI+ +++ R A K   ++L  G+G + 
Sbjct: 312 FQVYGDEHIKAEYVASLIRSVYEPILASHFG-EAIMPDLFHRLA-KHAAKVLHLGKGCYN 369

Query: 113 NLLISLVKK 121
           NL+ISL KK
Sbjct: 370 NLIISLAKK 378

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine. Does not have 1-N-methylation activity.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 9

>sp|Q84PP7|MXMT2_COFAR Monomethylxanthine methyltransferase 2 OS=Coffea arabica GN=MXMT2 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 77/129 (59%), Gaps = 10/129 (7%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGL--- 57
           G +EE KL S N P + P  +EVK ++E EGSF+I  LETF   +  GF  +D+  +   
Sbjct: 252 GHLEEEKLASFNLPFFTPSAEEVKCIVEEEGSFEILYLETFKAHYDAGFSIDDDYPVRSH 311

Query: 58  -----DKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFA 112
                D++ + +YV   +R+V E +L+S  G +AI+ +++ R A K   ++L  G+G + 
Sbjct: 312 FQVYGDEHIKAEYVASLIRSVYEPILASHFG-EAIMPDLFHRLA-KHAAKVLHLGKGCYN 369

Query: 113 NLLISLVKK 121
           NL+ISL KK
Sbjct: 370 NLIISLAKK 378

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and with a lower activity of paraxanthine to caffeine.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 9

>sp|Q9AVL9|CS4_COFAR Probable caffeine synthase 4 OS=Coffea arabica GN=CS4 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 10/129 (7%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGL--- 57
           G + E KL S N PIY   V+EVK ++E EGSF+I  L+TF + +  GF  +D+  +   
Sbjct: 253 GRLGEEKLDSFNVPIYTASVEEVKCMVEEEGSFEILYLQTFKLRYDAGFSIDDDCQVRSH 312

Query: 58  -----DKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFA 112
                D++AR  +V   +R+V E +L+S  G +AI+ +I+ RFA     +++  G+G + 
Sbjct: 313 SPVYSDEHARAAHVASLIRSVYEPILASHFG-EAIIPDIFHRFATNAA-KVIRLGKGFYN 370

Query: 113 NLLISLVKK 121
           NL+ISL KK
Sbjct: 371 NLIISLAKK 379

May be involved in the biosynthesis of caffeine.

Coffea arabica (taxid: 13443)

>sp|Q9AVJ9|MXMT1_COFAR Monomethylxanthine methyltransferase 1 OS=Coffea arabica GN=MXMT1 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 74/123 (60%), Gaps = 4/123 (3%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKY 60
           GL+EE KL S N P + P  +EVK ++E EGS +I  LETF   +   F  +D+  +  +
Sbjct: 252 GLLEEEKLDSFNIPFFTPSAEEVKCIVEEEGSCEILYLETFKAHYDAAFSIDDDYPVRSH 311

Query: 61  A--RGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISL 118
              + +YV   +R+V E +L+S  G +AI+ +++ R A K   ++L  G+G + NL+ISL
Sbjct: 312 EQIKAEYVASLIRSVYEPILASHFG-EAIMPDLFHRLA-KHAAKVLHMGKGCYNNLIISL 369

Query: 119 VKK 121
            KK
Sbjct: 370 AKK 372

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of paraxanthine to caffeine. Has a 5-fold preference for 7mX.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
296085033	549	unnamed protein product [Vitis vinifera]	0.967	0.214	0.421	5e-20
225447527	383	PREDICTED: probable caffeine synthase 4-	0.967	0.308	0.421	1e-19
255587698	310	Benzoate carboxyl methyltransferase, put	0.967	0.380	0.408	2e-18
296085034	226	unnamed protein product [Vitis vinifera]	0.967	0.522	0.406	2e-17
20271030	386	N-methyltransferase [Coffea liberica]	0.975	0.308	0.434	4e-17
255543743	328	Benzoate carboxyl methyltransferase, put	0.967	0.359	0.404	6e-17
334351219	372	RecName: Full=7-methylxanthosine synthas	0.934	0.306	0.446	2e-16
75168230	372	RecName: Full=7-methylxanthosine synthas	0.934	0.306	0.446	2e-16
20271028	372	N-methyltransferase [Coffea canephora] g	0.934	0.306	0.446	2e-16
20271026	371	N-methyltransferase [Coffea canephora]	0.934	0.307	0.446	2e-16

>gi|296085033|emb|CBI28448.3| unnamed protein product [Vitis vinifera]

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/121 (42%), Positives = 81/121 (66%), Gaps = 3/121 (2%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVE-NDNEGLDK 59
           G I+ES+L S N P++ P  ++V+ VI+RE SF + +LETF + W +   + N ++  DK
Sbjct: 254 GSIQESELDSLNIPLFMPSPEQVRSVIQRESSFTLLRLETFKLDWADNIDDGNKDQVFDK 313

Query: 60  YARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLV 119
           Y R KYV  ++RAVGE +L+S  G  A+++ ++ RF +KV + I E G+G + NL+ISL 
Sbjct: 314 YGRAKYVVMYIRAVGEPILASHFG-GAVMDSLFHRFFMKVVENI-ETGKGIYTNLVISLS 371

Query: 120 K 120
           +
Sbjct: 372 R 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447527|ref|XP_002267308.1| PREDICTED: probable caffeine synthase 4-like [Vitis vinifera]

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/121 (42%), Positives = 81/121 (66%), Gaps = 3/121 (2%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVE-NDNEGLDK 59
           G I+ES+L S N P++ P  ++V+ VI+RE SF + +LETF + W +   + N ++  DK
Sbjct: 254 GSIQESELDSLNIPLFMPSPEQVRSVIQRESSFTLLRLETFKLDWADNIDDGNKDQVFDK 313

Query: 60  YARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLV 119
           Y R KYV  ++RAVGE +L+S  G  A+++ ++ RF +KV + I E G+G + NL+ISL 
Sbjct: 314 YGRAKYVVMYIRAVGEPILASHFG-GAVMDSLFHRFFMKVVENI-ETGKGIYTNLVISLS 371

Query: 120 K 120
           +
Sbjct: 372 R 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587698|ref|XP_002534362.1| Benzoate carboxyl methyltransferase, putative [Ricinus communis] gi|223525428|gb|EEF28019.1| Benzoate carboxyl methyltransferase, putative [Ricinus communis]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 78/120 (65%), Gaps = 2/120 (1%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKY 60
           GLIEESKL S N P+YA   +EVK VIE EGSF+I++LE+FH+ W     ++    +DK+
Sbjct: 192 GLIEESKLDSFNIPLYAASAEEVKNVIEAEGSFNINRLESFHIGWDASIDDHYKASMDKH 251

Query: 61  ARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVK 120
            RG +V    RA  ES+L+   G + +++ +++RF++ +  E +E   GA+ N ++S+ K
Sbjct: 252 TRGMWVANCFRAASESILTHHFGGE-LIDIMFQRFSVGI-GEYMEMADGAYTNHVVSMTK 309

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085034|emb|CBI28449.3| unnamed protein product [Vitis vinifera]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 5/123 (4%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGL--D 58
           G ++ESKL   N P+Y P  +EV+ V+ REGSF++ +LETF + W +  +++ N+ L  D
Sbjct: 102 GFVQESKLDRCNIPLYMPTAEEVRDVVRREGSFNLLRLETFRLDW-DAHIDDGNKDLVFD 160

Query: 59  KYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISL 118
           ++ R KYV   +RAV E L  S  G D I+++++ RF +KV D+I E G+    N  +SL
Sbjct: 161 RFERAKYVVMGMRAVAEPLRISHFG-DGIMDDLFHRFFMKVADDI-EAGKDICINHTVSL 218

Query: 119 VKK 121
            K+
Sbjct: 219 TKR 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20271030|gb|AAM18507.1|AF494417_1 N-methyltransferase [Coffea liberica]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/129 (43%), Positives = 80/129 (62%), Gaps = 10/129 (7%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGL--- 57
           G +EE KL S N P+Y P  +EVK ++E EGSF+I  LETF V +  GF  +D+  L   
Sbjct: 252 GHLEEEKLDSFNLPVYIPSTEEVKCIVEEEGSFEILYLETFKVLYDAGFSIDDDYPLRSH 311

Query: 58  -----DKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFA 112
                D++ + +YV   VRAV E +L+S  G +AI+ +I+ RFA K   ++L  G+G + 
Sbjct: 312 VQVYSDEHIKAEYVASSVRAVYEPILASHFG-EAIIPDIFHRFA-KHAAKVLPLGKGFYN 369

Query: 113 NLLISLVKK 121
           NL+ISL KK
Sbjct: 370 NLIISLAKK 378

Source: Coffea liberica

Species: Coffea liberica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543743|ref|XP_002512934.1| Benzoate carboxyl methyltransferase, putative [Ricinus communis] gi|223547945|gb|EEF49437.1| Benzoate carboxyl methyltransferase, putative [Ricinus communis]

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 76/121 (62%), Gaps = 3/121 (2%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKY 60
           GLI++ K++S N P YAP  +E+K+VI+ EGSF + +LE F + W + +++    G DK 
Sbjct: 210 GLIKKEKMESFNLPYYAPTTEEIKKVIDAEGSFTLQRLEVFKMDW-DAYIKKAKPGADKK 268

Query: 61  ARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVK 120
           AR   +   +RAVGE +L S  G + I+++++ RF   V D  +E  +  F NL+ISL K
Sbjct: 269 ARAAIIATDLRAVGEPILGSHFGSE-IMDDLFHRFEEVVLDH-MEINKCQFINLVISLTK 326

Query: 121 K 121
           K
Sbjct: 327 K 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334351219|sp|A4GE69.1|XMT1_COFCA RecName: Full=7-methylxanthosine synthase 1; AltName: Full=Xanthosine methyltransferase; Short=XMT gi|146386466|pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase gi|146386467|pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase gi|146386468|pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase gi|146386469|pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase gi|90110980|gb|ABD90685.1| xanthosine methyltransferase [Coffea canephora]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 77/121 (63%), Gaps = 7/121 (5%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKY 60
           G +EE KL S N P+Y P  +EVK ++E EGSF+I  LETF V +  GF  +     D++
Sbjct: 253 GHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETFKVLYDAGFSID-----DEH 307

Query: 61  ARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVK 120
            + +YV   VRAV E +L+S  G +AI+ +I+ RFA K   ++L  G+G + NL+ISL K
Sbjct: 308 IKAEYVASSVRAVYEPILASHFG-EAIIPDIFHRFA-KHAAKVLPLGKGFYNNLIISLAK 365

Query: 121 K 121
           K
Sbjct: 366 K 366

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75168230|sp|Q9AVK0.1|XMT1_COFAR RecName: Full=7-methylxanthosine synthase 1; Short=CmXRS1; AltName: Full=Methyltransferase-like 3; Short=CaMTL3; AltName: Full=Xanthosine methyltransferase; Short=CaXMT1 gi|20271020|gb|AAM18502.1|AF494412_1 N-methyltransferase [Coffea arabica] gi|13365751|dbj|BAB39215.1| xanthosine methyltransferase [Coffea arabica] gi|26453373|dbj|BAC43755.1| 7-methylxanthosine synthase 1 [Coffea arabica] gi|312964510|gb|ADR30038.1| 7-methylxanthosine synthase 1 [Coffea canephora]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 77/121 (63%), Gaps = 7/121 (5%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKY 60
           G +EE KL S N P+Y P  +EVK ++E EGSF+I  LETF V +  GF  +     D++
Sbjct: 253 GHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETFKVLYDAGFSID-----DEH 307

Query: 61  ARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVK 120
            + +YV   VRAV E +L+S  G +AI+ +I+ RFA K   ++L  G+G + NL+ISL K
Sbjct: 308 IKAEYVASSVRAVYEPILASHFG-EAIIPDIFHRFA-KHAAKVLPLGKGFYNNLIISLAK 365

Query: 121 K 121
           K
Sbjct: 366 K 366

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20271028|gb|AAM18506.1|AF494416_1 N-methyltransferase [Coffea canephora] gi|33355461|gb|AAQ16154.1| putative caffeine synthase [Coffea canephora]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 77/121 (63%), Gaps = 7/121 (5%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKY 60
           G +EE KL S N P+Y P  +EVK ++E EGSF+I  LETF V +  GF  +     D++
Sbjct: 253 GHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETFKVLYDAGFSID-----DEH 307

Query: 61  ARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVK 120
            + +YV   VRAV E +L+S  G +AI+ +I+ RFA K   ++L  G+G + NL+ISL K
Sbjct: 308 IKAEYVASSVRAVYEPILASHFG-EAIIPDIFHRFA-KHAAKVLPLGKGFYNNLIISLAK 365

Query: 121 K 121
           K
Sbjct: 366 K 366

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20271026|gb|AAM18505.1|AF494415_1 N-methyltransferase [Coffea canephora]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 77/121 (63%), Gaps = 7/121 (5%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKY 60
           G +EE KL S N P+Y P  +EVK ++E EGSF+I  LETF V +  GF  +     D++
Sbjct: 252 GHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETFKVLYDAGFSID-----DEH 306

Query: 61  ARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVK 120
            + +YV   VRAV E +L+S  G +AI+ +I+ RFA K   ++L  G+G + NL+ISL K
Sbjct: 307 IKAEYVASSVRAVYEPILASHFG-EAIIPDIFHRFA-KHAAKVLPLGKGFYNNLIISLAK 364

Query: 121 K 121
           K
Sbjct: 365 K 365

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
TAIR|locus:2013149	389	JMT "jasmonic acid carboxyl me	0.967	0.303	0.333	5.8e-13
TAIR|locus:2080747	379	BSMT1 [Arabidopsis thaliana (t	0.926	0.298	0.347	2.5e-12
TAIR|locus:2179929	415	NAMT1 [Arabidopsis thaliana (t	0.942	0.277	0.338	6.2e-11
TAIR|locus:2144466	368	AT5G38020 [Arabidopsis thalian	0.983	0.326	0.294	2.1e-09
TAIR|locus:2179969	385	AT5G04380 "AT5G04380" [Arabido	0.967	0.306	0.330	3.8e-09
TAIR|locus:2154845	354	AT5G66430 [Arabidopsis thalian	0.959	0.330	0.322	4.1e-09
TAIR|locus:2115400	371	AT4G36470 [Arabidopsis thalian	0.934	0.307	0.327	4.5e-09
TAIR|locus:2095572	368	AT3G21950 [Arabidopsis thalian	0.983	0.326	0.317	5.8e-09
TAIR|locus:2053458	359	AT2G14060 [Arabidopsis thalian	0.975	0.331	0.301	3.2e-08
TAIR|locus:2131483	376	GAMT1 "AT4G26420" [Arabidopsis	0.827	0.268	0.280	3.9e-05

TAIR|locus:2013149 JMT "jasmonic acid carboxyl methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 5.8e-13, P = 5.8e-13
 Identities = 42/126 (33%), Positives = 72/126 (57%)

Query:     1 GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGL--- 57
             G+IEE K+ + N P YA   +E+K VIE+EGSF I +LE   + W  G +  ++  L   
Sbjct:   264 GIIEEEKIDAFNAPYYAASSEELKMVIEKEGSFSIDRLEISPIDWEGGSISEESYDLVIR 323

Query:    58 ---DKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANL 114
                +  A G+ V+  +RAV E +L    G++ +++E++ R+A K+  E        +A +
Sbjct:   324 SKPEALASGRRVSNTIRAVVEPMLEPTFGEN-VMDELFERYA-KIVGEYFYVSSPRYAIV 381

Query:   115 LISLVK 120
             ++SLV+
Sbjct:   382 ILSLVR 387

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=NAS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009694 "jasmonic acid metabolic process" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0030795 "jasmonate O-methyltransferase activity" evidence=IMP;IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2080747 BSMT1 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 42/121 (34%), Positives = 72/121 (59%)

Query:     1 GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKY 60
             GL+ ESKL + N P Y P V E+K+VI++EGSF+I++LE+ H   L  + E D+     +
Sbjct:   267 GLVSESKLDAFNMPFYDPNVQELKEVIQKEGSFEINELES-HGFDLGHYYEEDD-----F 320

Query:    61 ARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVK 120
               G+     +RAV E +L +  G++ I++ ++ ++A  VT     + +    +L++SL K
Sbjct:   321 EAGRNEANGIRAVSEPMLIAHFGEE-IIDTLFDKYAYHVTQHANCRNKTT-VSLVVSLTK 378

Query:   121 K 121
             K
Sbjct:   379 K 379

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006952 "defense response" evidence=IEP

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0051707 "response to other organism" evidence=IEP

GO:0052624 "2-phytyl-1,4-naphthoquinone methyltransferase activity" evidence=IDA

GO:0080150 "S-adenosyl-L-methionine:benzoic acid carboxyl methyl transferase activity" evidence=IDA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2179929 NAMT1 [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 6.2e-11, P = 6.2e-11
 Identities = 41/121 (33%), Positives = 67/121 (55%)

Query:     1 GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKY 60
             GL+  SK+ S   P Y P   E+K+++++EGSF+I  LET H   L G    D     K 
Sbjct:   295 GLVSASKVDSFYLPFYDPNEKEIKEMVQKEGSFEIRDLET-HGYDL-GHCNQDESKRSK- 351

Query:    61 ARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVK 120
               G+    ++RAV E LL++  GD AI+  ++ +FA  V+  +  + +    ++++SL K
Sbjct:   352 -SGQNEANYIRAVSEPLLAAHFGD-AIINILFNKFACHVSQHVSCRNKTT-VSIVVSLTK 408

Query:   121 K 121
             K
Sbjct:   409 K 409

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

TAIR|locus:2144466 AT5G38020 [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 38/129 (29%), Positives = 66/129 (51%)

Query:     1 GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFH---VSWLEGFVE--NDNE 55
             G+++ES + S N P Y P   EV++VIE EGSF I   ET      S+  G  E  +D++
Sbjct:   241 GIVKESDVDSFNLPFYNPDESEVREVIESEGSFKISNFETIFGLLFSYKTGRTEVKDDDD 300

Query:    56 GLDKYARGKYVTRH---VRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFA 112
              LD+  R + + +    +R++ E +L +  GD AI++ ++ R+   + +           
Sbjct:   301 NLDQSCRFEVIRKRASIIRSITEPMLGAHFGD-AIMDRLFERYTYHLAERYDTLRNKPTV 359

Query:   113 NLLISLVKK 121
                +SL +K
Sbjct:   360 QFFVSLTRK 368

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=TAS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2179969 AT5G04380 "AT5G04380" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 40/121 (33%), Positives = 65/121 (53%)

Query:     1 GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKY 60
             GL+  SK+ S   P Y P  +EVK++I  EGSF I+ LE  H   L    E  +    K 
Sbjct:   268 GLLSASKVYSFKMPFYDPNEEEVKEIIRNEGSFQINDLE-MHEFDLGHSKEKCSLQSHKA 326

Query:    61 ARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVK 120
               G+     +RAV E++L +  GDD I++ ++ ++A  V+     + + +   L++SLV+
Sbjct:   327 KAGQKEASCIRAVTETMLVAHFGDD-IIDALFHKYAHHVSQHASCRVKTS-VTLIVSLVR 384

Query:   121 K 121
             K
Sbjct:   385 K 385

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

TAIR|locus:2154845 AT5G66430 [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 40/124 (32%), Positives = 69/124 (55%)

Query:     1 GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGL--D 58
             GL+  SK+ S N P Y P  +EV ++I  EGSF+I+ LE  H   L G   +D + +   
Sbjct:   235 GLVSASKVDSFNIPFYDPSKEEVMEMIRNEGSFEINDLE-IHGFEL-GLSNHDEDYMLHS 292

Query:    59 KYAR-GKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLIS 117
             + ++ G+     +RAV ES+L +  G D I++ ++++FA  V+       +     L++S
Sbjct:   293 QISKAGQREANCIRAVSESMLVADFGVD-IMDTLFKKFAYHVSQHASCTNKTT-VTLVVS 350

Query:   118 LVKK 121
             L++K
Sbjct:   351 LIRK 354

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

TAIR|locus:2115400 AT4G36470 [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 40/122 (32%), Positives = 66/122 (54%)

Query:     1 GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKY 60
             G  EE KL S +   YAP  DE++  +++EGSF++ +LE   V   +G  E D       
Sbjct:   258 GETEEEKLDSYDMHFYAPSADEIEGEVDKEGSFELERLEMLEVKKDKGNTEGD------I 311

Query:    61 ARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVK 120
             + GK V + VRAV ES+L    G+  I+++++  +   V DE+ ++       +++ L K
Sbjct:   312 SYGKAVAKTVRAVQESMLVQHFGEK-ILDKLFDTYCRMVDDELAKEDIRPITFVVV-LRK 369

Query:   121 KL 122
             KL
Sbjct:   370 KL 371

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS;IMP

TAIR|locus:2095572 AT3G21950 [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 41/129 (31%), Positives = 68/129 (52%)

Query:     1 GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFH---VSWLEGF--VENDNE 55
             G+++ES L+S N P Y+P   EVK+VIE EGSF+I   ET      S+  G   V++D++
Sbjct:   241 GVVKESDLESFNLPYYSPDESEVKEVIENEGSFEIKNFETIFGLLFSYKTGHSEVKDDDD 300

Query:    56 GLDKYARGKYV-TRH--VRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFA 112
              +D   R + V TR    R++ E +L +  G+ AI++ ++ ++                 
Sbjct:   301 DVDHSRRFEVVKTRANMTRSIIEPMLVAHFGE-AIIDRLFDKYIYHACQRYDTLRNKPTV 359

Query:   113 NLLISLVKK 121
             N  +SL +K
Sbjct:   360 NFFVSLTRK 368

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

TAIR|locus:2053458 AT2G14060 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 38/126 (30%), Positives = 68/126 (53%)

Query:     1 GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETF-HVS--WLEGFVENDNEGL 57
             G + +S +KS N P Y P  +EV++ I +EGSF+I ++E F HV    ++   E++ + L
Sbjct:   236 GFVNDSMVKSFNMPFYNPNEEEVREFILKEGSFEITKIEKFDHVVPYKIDREEEDEEQSL 295

Query:    58 DKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTD--EILEKGRGAFANLL 115
                A  K+ +   R + E LL +  GD AI+E ++ ++A  +     +    R     ++
Sbjct:   296 QLEAGIKHAS-WARCITEPLLVAHFGD-AIIEPVFNKYAHYMAKYLSVSNHRRNMTLVIV 353

Query:   116 ISLVKK 121
             +SL +K
Sbjct:   354 VSLTRK 359

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=TAS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2131483 GAMT1 "AT4G26420" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 30/107 (28%), Positives = 54/107 (50%)

Query:     1 GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVS-WLEGFVENDNEGLDK 59
             GLIEE K    N P+Y    +E+   I+R G F I + E   ++  + G  E   +  D 
Sbjct:   258 GLIEEEKRDGFNIPVYFRTTEEIAAAIDRCGGFKIEKTENLIIADHMNGKQEELMKDPDS 317

Query:    60 YARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVT-D-EIL 104
             Y R +    + +A  + ++ +  G D +  ++++R+A++   D EIL
Sbjct:   318 YGRDR--ANYAQAGLKPIVQAYLGPD-LTHKLFKRYAVRAAADKEIL 361

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS;IDA

GO:0010341 "gibberellin carboxyl-O-methyltransferase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	122
pfam03492	331	pfam03492, Methyltransf_7, SAM dependent carboxyl	2e-25
PLN02668	386	PLN02668, PLN02668, indole-3-acetate carboxyl meth	9e-07

>gnl|CDD|217591 pfam03492, Methyltransf_7, SAM dependent carboxyl methyltransferase

 Score = 97.0 bits (242), Expect = 2e-25
 Identities = 47/124 (37%), Positives = 76/124 (61%), Gaps = 6/124 (4%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETF-HVSWLEGFVENDNEGLDK 59
           GLIEE KL S N PIYAP  +EVK++IE+EGSF I +LE   H +       ++++  DK
Sbjct: 211 GLIEEEKLDSFNIPIYAPSPEEVKEIIEKEGSFTIERLEIIKHPNGE--VPWDESDSEDK 268

Query: 60  YARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTD--EILEKGRGAFANLLIS 117
              G++V   VRAV E +L +  G+D I+++++ R+A K+++      +      N+++S
Sbjct: 269 VEDGRFVASSVRAVVEPMLVAHFGED-IMDKLFDRYAKKLSEHLSKELQNAKKTINVVVS 327

Query: 118 LVKK 121
           L +K
Sbjct: 328 LSRK 331

This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesised through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyzes the second step to produce theobromine. Length = 331

>gnl|CDD|178273 PLN02668, PLN02668, indole-3-acetate carboxyl methyltransferase

 Score = 45.6 bits (108), Expect = 9e-07
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETF 41
           GL+   K  S N P+YAP + + K+V+E  GSF I +LE F
Sbjct: 270 GLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVF 310

Length = 386

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
PLN02668	386	indole-3-acetate carboxyl methyltransferase	100.0
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	100.0

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=100.00  E-value=9e-36  Score=244.43  Aligned_cols=113  Identities=28%  Similarity=0.465  Sum_probs=104.1

Q ss_pred             CCccccccCcccCCccCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHhhHHHHHh
Q 038593            1 GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSS   80 (122)
Q Consensus         1 GlI~eeklDsFNiP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~Epll~~   80 (122)
                      |+|++||+||||+|+|+||++||+++|++||||+|++||+++..| ++.++.   +.|....|+++|+++||++||||++
T Consensus       270 GlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~-~~~~~~---~~d~~~~g~~~a~~~RA~~E~ll~~  345 (386)
T PLN02668        270 GLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGS-PLVVNE---PDDAAEVGRAMANSCRSVAGVLVDA  345 (386)
T ss_pred             CCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccC-cccccC---cccHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999 764433   2355568999999999999999999


Q ss_pred             hhCChhHHHHHHHHHHHHHhhHHHhh--cCCCeEEEEEEEe
Q 038593           81 ICGDDAIVEEIYRRFAIKVTDEILEK--GRGAFANLLISLV  119 (122)
Q Consensus        81 HFG~~~imdeLF~r~~~~v~~~~~~~--~~~~~~~~~vsL~  119 (122)
                      |||++ |||+||+||++++++ +++.  ++.+++++++||+
T Consensus       346 HFG~~-i~D~lF~r~~~~v~~-~~~~~~~~~~~~~~~~sL~  384 (386)
T PLN02668        346 HIGEE-LSNELFLRVERRATS-HAKELLEKLQFFHIVASLS  384 (386)
T ss_pred             HcCHH-HHHHHHHHHHHHHHH-HHHhhcccCceEEEEEEEe
Confidence            99999 999999999999999 9998  8889999999996

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=100.00  E-value=1.5e-35  Score=239.23  Aligned_cols=118  Identities=40%  Similarity=0.663  Sum_probs=96.2

Q ss_pred             CCccccccCcccCCccCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHhhHHHHHh
Q 038593            1 GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSS   80 (122)
Q Consensus         1 GlI~eeklDsFNiP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~Epll~~   80 (122)
                      |+|++||+|+||+|+|+||++||+++|+++|||+|++||+++..| ...........|...+|+.+++++||++||||.+
T Consensus       214 GlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~iRA~~e~~l~~  292 (334)
T PF03492_consen  214 GLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLELFEQPW-WSVPDDESWKEDAKEYARNVANYIRAVFEPLLKA  292 (334)
T ss_dssp             TSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEEEEEET-CCTCTTT-STTTHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEEEeecc-cccchhhhcccchhhhHHHHHHhHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999998665 3322111123355679999999999999999999


Q ss_pred             hhCChhHHHHHHHHHHHHHhhHHHhhcC---CCeEEEEEEEeec
Q 038593           81 ICGDDAIVEEIYRRFAIKVTDEILEKGR---GAFANLLISLVKK  121 (122)
Q Consensus        81 HFG~~~imdeLF~r~~~~v~~~~~~~~~---~~~~~~~vsL~rk  121 (122)
                      |||++ |||+||+||++++++ +++..+   .+++++++||+||
T Consensus       293 hfG~e-i~D~LF~r~~~~v~~-~~~~~~~~~~~~~~i~~~L~Rk  334 (334)
T PF03492_consen  293 HFGEE-IMDELFERYAKKVAE-HLEKEKSRNMKFVNIVVSLTRK  334 (334)
T ss_dssp             HH-HH-HHHHHHHHHHHHHHH-HHHHTHTT-BEEEEEEEEEEE-
T ss_pred             HhChH-HHHHHHHHHHHHHHH-HHHHhhccCCCcEEEEEEEeeC
Confidence            99999 999999999999999 988655   7899999999998

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	122
2eg5_A	372	The Structure Of Xanthosine Methyltransferase Lengt		3e-19
2efj_A	384	The Structure Of 1,7 Dimethylxanthine Methyltransfe		5e-18
1m6e_X	359	Crystal Structure Of Salicylic Acid Carboxyl Methyl		8e-12

>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase Length = 372

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 77/121 (63%), Gaps = 7/121 (5%)
Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKY 60
           G +EE KL S N P+Y P  +EVK ++E EGSF+I  LETF V +  GF  +     D++
Sbjct: 253 GHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETFKVLYDAGFSID-----DEH 307
Query: 61  ARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVK 120
            + +YV   VRAV E +L+S  G +AI+ +I+ RFA K   ++L  G+G + NL+ISL K
Sbjct: 308 IKAEYVASSVRAVYEPILASHFG-EAIIPDIFHRFA-KHAAKVLPLGKGFYNNLIISLAK 365
Query: 121 K 121
           K
Sbjct: 366 K 366

>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase Length = 384

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 82/129 (63%), Gaps = 10/129 (7%)
Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGF-VENDNEG--- 56
           G +EE KL S N PIYAP  +EVK+++E EGSF+I  LETF+  +  GF +++D +G   
Sbjct: 252 GHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQGRSH 311
Query: 57  ----LDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFA 112
                D++AR  +V   VR++ E +L+S  G +AI+ ++  R A K   ++L  G+G + 
Sbjct: 312 SPVSCDEHARAAHVASVVRSIYEPILASHFG-EAILPDLSHRIA-KNAAKVLRSGKGFYD 369
Query: 113 NLLISLVKK 121
           +++ISL KK
Sbjct: 370 SVIISLAKK 378

>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl Methyltransferase (Samt) Length = 359

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKY 60
           GLIEE K+   N P Y P   EV+  I +EGSF I  +E   + W     + D  G    
Sbjct: 240 GLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGG-SVE 298
Query: 61  ARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVK 120
             G  V R +RAV E LL    G +AI+E+++ R+ + +  E + K +  F N+++SL++
Sbjct: 299 EEGYNVARCMRAVAEPLLLDHFG-EAIIEDVFHRYKLLII-ERMSKEKTKFINVIVSLIR 356
Query: 121 K 121
           K
Sbjct: 357 K 357

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	4e-28
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	5e-27
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	4e-25

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 Length = 359

 Score =  104 bits (260), Expect = 4e-28
 Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKY 60
           GLIEE K+   N P Y P   EV+  I +EGSF I  +E   + W     ++ + G    
Sbjct: 240 GLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYW-SSCTKDGDGGGSVE 298

Query: 61  ARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVK 120
             G  V R +RAV E LL    G+  I+E+++ R+ + + +  + K +  F N+++SL++
Sbjct: 299 EEGYNVARCMRAVAEPLLLDHFGEA-IIEDVFHRYKLLIIER-MSKEKTKFINVIVSLIR 356

Query: 121 K 121
           K
Sbjct: 357 K 357

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* Length = 384

 Score =  101 bits (253), Expect = 5e-27
 Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 10/129 (7%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEG---- 56
           G +EE KL S N PIYAP  +EVK+++E EGSF+I  LETF+  +  GF  +D+      
Sbjct: 252 GHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQGRSH 311

Query: 57  ----LDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFA 112
                D++AR  +V   VR++ E +L+S  G+  I+ ++  R A       L  G+G + 
Sbjct: 312 SPVSCDEHARAAHVASVVRSIYEPILASHFGEA-ILPDLSHRIAKNAAKV-LRSGKGFYD 369

Query: 113 NLLISLVKK 121
           +++ISL KK
Sbjct: 370 SVIISLAKK 378

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} Length = 374

 Score = 96.4 bits (239), Expect = 4e-25
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKY 60
           GL+   K    N P+YAP + + K+V++  GSF I +L  +         E D    D  
Sbjct: 258 GLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVYKGGSPLVVNEPD----DAS 313

Query: 61  ARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGA-FANLLISLV 119
             G+      R+V   L+ +  G++ +  +++ R   + T    +      F +++ SL 
Sbjct: 314 EVGRAFASSCRSVAGVLVEAHIGEE-LSNKLFSRVESRATSHAKDVLVNLQFFHIVASLS 372

Query: 120 K 120
            
Sbjct: 373 F 373

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	99.97
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	99.97
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	99.96
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	92.53
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	87.6
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	87.52
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	84.24
3f4k_A	257	Putative methyltransferase; structural genomics, P	81.72

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=99.97  E-value=7e-32  Score=218.64  Aligned_cols=119  Identities=34%  Similarity=0.603  Sum_probs=107.4

Q ss_pred             CCccccccCcccCCccCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHhhHHHHHh
Q 038593            1 GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSS   80 (122)
Q Consensus         1 GlI~eeklDsFNiP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~Epll~~   80 (122)
                      |+|++||+|+||+|+|.||++|++++|+++|+|+|+++|+++..| ++.+++.+...|....|+.+|+++||++||||.+
T Consensus       240 Gli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~~~~~-~~~~~~~d~~~~~~~~g~~~a~~~Ra~~e~ll~~  318 (359)
T 1m6e_X          240 GLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYW-SSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLD  318 (359)
T ss_dssp             TCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEET-TCCSSCTTCCSSTTTTTTHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEEeecc-CcccchhhhhhhhhHhHhHhhhhhhhhcchhhHH
Confidence            899999999999999999999999999999999999999999999 8765421112234468999999999999999999


Q ss_pred             hhCChhHHHHHHHHHHHHHhhHHHhhcCCCeEEEEEEEeecC
Q 038593           81 ICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVKKL  122 (122)
Q Consensus        81 HFG~~~imdeLF~r~~~~v~~~~~~~~~~~~~~~~vsL~rk~  122 (122)
                      |||++ |||+||+||++++++ ++..++.++++++++|+||.
T Consensus       319 hfG~~-i~d~lf~ry~~~~~~-~~~~~~~~~~~~~~~L~k~~  358 (359)
T 1m6e_X          319 HFGEA-IIEDVFHRYKLLIIE-RMSKEKTKFINVIVSLIRKS  358 (359)
T ss_dssp             HHCHH-HHHHHHHHHHHHHHH-HHHSSCCEEEEEEEEEEBCC
T ss_pred             hccHH-HHHHHHHHHHHHHHH-HHhhCCCceEEEEEEEEeCC
Confidence            99999 999999999999999 98888888999999999984

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=99.97  E-value=5e-31  Score=215.28  Aligned_cols=119  Identities=39%  Similarity=0.625  Sum_probs=105.6

Q ss_pred             CCccccccCcccCCccCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCC---CCCC---ccc---cchhhhHHHHHHHHH
Q 038593            1 GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGF---VEND---NEG---LDKYARGKYVTRHVR   71 (122)
Q Consensus         1 GlI~eeklDsFNiP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~---~~~~---~~~---~d~~~~g~~va~~iR   71 (122)
                      |+|+++|+|+||+|+|.||++|++++|+++|+|+|+++|+++..| ++.   +++.   +..   .|....|+++|+++|
T Consensus       252 Gli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~g~~~a~~iR  330 (384)
T 2efj_A          252 GHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPY-DAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVR  330 (384)
T ss_dssp             TSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEEEEEET-TTTCCC---------CCSHHHHHHHHHHHHHHHH
T ss_pred             CCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEEEeecc-cccccccccccccccccccchHhHhHHHhhhhhH
Confidence            899999999999999999999999999999999999999999999 875   3310   111   134568999999999


Q ss_pred             HhhHHHHHhhhCChhHHHHHHHHHHHHHhhHHHhhcCCCeEEEEEEEeecC
Q 038593           72 AVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVKKL  122 (122)
Q Consensus        72 Av~Epll~~HFG~~~imdeLF~r~~~~v~~~~~~~~~~~~~~~~vsL~rk~  122 (122)
                      |++||+|.+|||++ |||+||+||++++++ ++..++.++++++++|+||.
T Consensus       331 a~~epll~~hfG~~-i~d~lF~ry~~~~~~-~~~~~~~~~~~~~~~L~k~~  379 (384)
T 2efj_A          331 SIYEPILASHFGEA-ILPDLSHRIAKNAAK-VLRSGKGFYDSVIISLAKKP  379 (384)
T ss_dssp             HHHHHHHHHHHCST-THHHHHHHHHHHHHH-HHHHTCCEEEEEEEEEEECC
T ss_pred             HhhhhhhHHhccHH-HHHHHHHHHHHHHHH-HHhhCCCceEEEEEEEEEcc
Confidence            99999999999999 999999999999999 99888889999999999984

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=99.96  E-value=5.4e-29  Score=202.53  Aligned_cols=113  Identities=22%  Similarity=0.363  Sum_probs=101.8

Q ss_pred             CCccccccCcccCCccCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHhhHHHHHh
Q 038593            1 GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSS   80 (122)
Q Consensus         1 GlI~eeklDsFNiP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~Epll~~   80 (122)
                      |+|+++++|+||+|+|.||++|++++|+++|+|+|+++|+++.+| ++..+.   ..+....|+.+|+++||++||||.+
T Consensus       258 G~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I~~le~~~~~~-~~~~~~---~~~~~~~g~~~a~~~Ra~~e~ll~~  333 (374)
T 3b5i_A          258 GLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVYKGGS-PLVVNE---PDDASEVGRAFASSCRSVAGVLVEA  333 (374)
T ss_dssp             SSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEEEEEEEEECCC-CCCCSS---TTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcchhhcccCCccccCCCHHHHHHHHHhcCCcEEEEEEEEeecC-Cccccc---cchhHHHHHHHHHHHHHhccchhHh
Confidence            889999999999999999999999999999999999999999999 775432   1233458999999999999999999


Q ss_pred             hhCChhHHHHHHHHHHHHHhhHHHh--hcCCC--eEEEEEEEe
Q 038593           81 ICGDDAIVEEIYRRFAIKVTDEILE--KGRGA--FANLLISLV  119 (122)
Q Consensus        81 HFG~~~imdeLF~r~~~~v~~~~~~--~~~~~--~~~~~vsL~  119 (122)
                      |||++ |||+||+||++++++ +++  .++.+  ++++++||+
T Consensus       334 hfg~~-i~d~lf~ry~~~~~~-~~~~~~~~~~~~~~~~~~~l~  374 (374)
T 3b5i_A          334 HIGEE-LSNKLFSRVESRATS-HAKDVLVNLQFFHIVASLSFT  374 (374)
T ss_dssp             TSCHH-HHHHHHHHHHHHHHH-TCHHHHTTCCCEEEEEEEEEC
T ss_pred             hccHH-HHHHHHHHHHHHHHH-hHHHhhhccccceEEEEEEeC
Confidence            99999 999999999999999 877  66777  899999985

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=92.53  E-value=1.5  Score=32.15  Aligned_cols=95  Identities=18%  Similarity=0.260  Sum_probs=59.0

Q ss_pred             ccCCccCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHhhHHHHHhhhCChhHHHH
Q 038593           11 SNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSSICGDDAIVEE   90 (122)
Q Consensus        11 FNiP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~Epll~~HFG~~~imde   90 (122)
                      +.-|.+.++.+++++++++.| |++.+++.+...+ .. ..          +...+...+++...|++. ..+++ -.++
T Consensus       181 ~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~-~~-~~----------~~~~~~~~l~~~~~~~~~-~~~~~-~~~~  245 (279)
T 3ccf_A          181 ALNPWYFPSIGEYVNILEKQG-FDVTYAALFNRPT-TL-AE----------GEFGMANWIQMFASAFLV-GLTPD-QQVQ  245 (279)
T ss_dssp             GGCCCCCCCHHHHHHHHHHHT-EEEEEEEEEECCE-EC-SS----------GGGHHHHHHHHHCHHHHT-TCCHH-HHHH
T ss_pred             CcCceeCCCHHHHHHHHHHcC-CEEEEEEEecccc-cc-cC----------CHHHHHHHHHHhhHHHhc-cCCHH-HHHH
Confidence            455778899999999999999 9998888775443 11 00          112334455555555553 46667 7788


Q ss_pred             HHHHHHHHHhhHHHhhcC---CCeEEEEEEEeec
Q 038593           91 IYRRFAIKVTDEILEKGR---GAFANLLISLVKK  121 (122)
Q Consensus        91 LF~r~~~~v~~~~~~~~~---~~~~~~~vsL~rk  121 (122)
                      +..++.+.+.+ +.....   ..+..+++..+|+
T Consensus       246 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~v~a~Kp  278 (279)
T 3ccf_A          246 LIRKVEATLQD-KLYHQESWTADYRRIRIVSIKA  278 (279)
T ss_dssp             HHHHHHHHHHH-HHEETTEEEECCEEEEEEEEEC
T ss_pred             HHHHHHHHHHh-hccCCCcEEEEEEEEEEEEecC
Confidence            88888777766 543221   1234455555553

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=87.60  E-value=5.6  Score=28.68  Aligned_cols=66  Identities=6%  Similarity=0.046  Sum_probs=41.9

Q ss_pred             ccCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHhhHHHHHhhhCChhHHHHHHHH
Q 038593           15 IYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRR   94 (122)
Q Consensus        15 ~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~Epll~~HFG~~~imdeLF~r   94 (122)
                      .+.++.+++++++++.| |++.+.+.+...+ .+             .-..+...+++..+. +..++|++ ..+.+...
T Consensus       191 ~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~-~~-------------~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~  253 (273)
T 3bus_A          191 LSLGGIDEYESDVRQAE-LVVTSTVDISAQA-RP-------------SLVKTAEAFENARSQ-VEPFMGAE-GLDRMIAT  253 (273)
T ss_dssp             CCCCCHHHHHHHHHHTT-CEEEEEEECHHHH-TT-------------HHHHHHHHHHHTHHH-HHHHHCHH-HHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHcC-CeEEEEEECcHhH-HH-------------HHHHHHHHHHHhHHH-HHhhcCHH-HHHHHHHH
Confidence            35689999999999998 8888887664332 11             112233333444444 45678988 77776666


Q ss_pred             HHH
Q 038593           95 FAI   97 (122)
Q Consensus        95 ~~~   97 (122)
                      +..
T Consensus       254 ~~~  256 (273)
T 3bus_A          254 FRG  256 (273)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=87.52  E-value=4.7  Score=29.89  Aligned_cols=81  Identities=10%  Similarity=0.226  Sum_probs=46.6

Q ss_pred             cCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHhhHHHHHhhhCChhHHHHHHHHH
Q 038593           16 YAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRF   95 (122)
Q Consensus        16 Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~Epll~~HFG~~~imdeLF~r~   95 (122)
                      +.||++++.+.+++.| |++..++.+...+ .             ..-..+...+++..+. +.+.||++ ..+ +|..|
T Consensus       219 ~~~s~~~~~~~l~~aG-f~~~~~~~~~~~y-~-------------~tl~~w~~~~~~~~~~-~~~~~~~~-~~~-~w~~y  280 (302)
T 3hem_A          219 RLPRISQVDYYSSNAG-WKVERYHRIGANY-V-------------PTLNAWADALQAHKDE-AIALKGQE-TCD-IYMHY  280 (302)
T ss_dssp             CCCCHHHHHHHHHHHT-CEEEEEEECGGGH-H-------------HHHHHHHHHHHHTHHH-HHHHHCHH-HHH-HHHHH
T ss_pred             CCCCHHHHHHHHHhCC-cEEEEEEeCchhH-H-------------HHHHHHHHHHHHhHHH-HHHHhCHH-HHH-HHHHH
Confidence            7899999999999988 8888887663322 0             0122233333333333 34558877 554 46666


Q ss_pred             HHHHhhHHHhhcCCCeEEEE
Q 038593           96 AIKVTDEILEKGRGAFANLL  115 (122)
Q Consensus        96 ~~~v~~~~~~~~~~~~~~~~  115 (122)
                      -...+. ..+.+.....+++
T Consensus       281 l~~~~~-~f~~~~~~~~q~~  299 (302)
T 3hem_A          281 LRGCSD-LFRDKYTDVCQFT  299 (302)
T ss_dssp             HHHHHH-HHHTTSSEEEEEE
T ss_pred             HHHHHH-HHhCCCCeEEEEE
Confidence            555555 4454444444433

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=84.24  E-value=2  Score=30.69  Aligned_cols=89  Identities=12%  Similarity=0.110  Sum_probs=53.7

Q ss_pred             ccCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHhhHHHHHhhhCChhHHHHHHHH
Q 038593           15 IYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRR   94 (122)
Q Consensus        15 ~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~Epll~~HFG~~~imdeLF~r   94 (122)
                      .+.++.+++++++++.| |++...+..  .| ..   .        .+...+...+++.+.|.+ .+.+++ ..+++..+
T Consensus       171 ~~~~~~~~~~~~l~~~G-f~~~~~~~~--~~-~~---~--------~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~  233 (263)
T 2yqz_A          171 LHAKRLKEVEEALRRLG-LKPRTREVA--RW-RE---E--------RTPREALEALSERLYSFT-QGLPEP-VHARVMER  233 (263)
T ss_dssp             HHHHHHHHHHHHHHHTT-CCCEEEEEE--EE-EE---E--------ECHHHHHHHHHTTCSGGG-SSSCHH-HHHHHHHH
T ss_pred             cccCCHHHHHHHHHHcC-CCcceEEEe--ee-ec---C--------CCHHHHHHHHHHhhcccc-cCCCHH-HHHHHHHH
Confidence            34568999999999998 887766544  33 11   0        123444455555444443 467777 78888888


Q ss_pred             HHHHHhhHHHhhcC---CCeEEEEEEEeec
Q 038593           95 FAIKVTDEILEKGR---GAFANLLISLVKK  121 (122)
Q Consensus        95 ~~~~v~~~~~~~~~---~~~~~~~vsL~rk  121 (122)
                      +.+.+.+ ......   .-...+++..-||
T Consensus       234 ~~~~l~~-~~~~~~~~~~~~~~~~~~~~rk  262 (263)
T 2yqz_A          234 LWAWAEA-ELGDLDRPFPVEKRFLLRVSRL  262 (263)
T ss_dssp             HHHHHHH-HSSCTTSCEEEEEEEEEEEEEC
T ss_pred             HHHHHHH-hcCCcCccccccceeEEEeeec
Confidence            8888777 543222   2234555555555

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=81.72  E-value=12  Score=26.58  Aligned_cols=84  Identities=10%  Similarity=0.145  Sum_probs=50.3

Q ss_pred             CCCHHHHHHHHHhhCceeEeeeeeee-eccCCCCCCCCccccchhhhHHHHHHHHHHhhHHHHHhhhCChhHHHHHHHHH
Q 038593           17 APYVDEVKQVIEREGSFDIHQLETFH-VSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRF   95 (122)
Q Consensus        17 ~Ps~eEv~~~Ie~eGsF~I~~le~~~-~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~Epll~~HFG~~~imdeLF~r~   95 (122)
                      .++.+++.+++++.| |++.....+. ..| ..   .             .....+...+.+...|-+.. ..+++-++.
T Consensus       173 ~~~~~~~~~~l~~aG-f~~v~~~~~~~~~w-~~---~-------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  233 (257)
T 3f4k_A          173 ISVIPTCIDKMERAG-YTPTAHFILPENCW-TE---H-------------YFAPQDEVRETFMKEHAGNK-TAMDFMKGQ  233 (257)
T ss_dssp             CCBHHHHHHHHHHTT-EEEEEEEECCGGGT-CC---C-------------CCHHHHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHCC-CeEEEEEECChhhH-HH---H-------------HHHHHHHHHHHHHHhcCCCH-HHHHHHHHH
Confidence            568999999999988 8877765442 223 11   0             11123334455566677777 777777776


Q ss_pred             HHHHhhHHHhhcCCCeEEEEEEEeec
Q 038593           96 AIKVTDEILEKGRGAFANLLISLVKK  121 (122)
Q Consensus        96 ~~~v~~~~~~~~~~~~~~~~vsL~rk  121 (122)
                      ...... +... ...+...++.++|+
T Consensus       234 ~~~~~~-~~~~-~~~~g~~~~v~~k~  257 (257)
T 3f4k_A          234 QYERSL-YSKY-KDYYGYVFYIGQKR  257 (257)
T ss_dssp             HHHHHH-HHHH-TTTEEEEEEEEEEC
T ss_pred             HHHHHH-HHHh-CCccceEEEEEecC
Confidence            666554 4222 44455666666664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	122
d1m6ex_	359	c.66.1.35 (X:) Salicylic acid carboxyl methyltrans	9e-29

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} Length = 359

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

 Score =  105 bits (262), Expect = 9e-29
 Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 1   GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKY 60
           GLIEE K+   N P Y P   EV+  I +EGSF I  +E   + W     ++ + G    
Sbjct: 240 GLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYW-SSCTKDGDGGGSVE 298

Query: 61  ARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVK 120
             G  V R +RAV E LL    G +AI+E+++ R+ + + +  + K +  F N+++SL++
Sbjct: 299 EEGYNVARCMRAVAEPLLLDHFG-EAIIEDVFHRYKLLIIER-MSKEKTKFINVIVSLIR 356

Query: 121 K 121
           K
Sbjct: 357 K 357

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	100.0
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	85.32

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=100.00  E-value=1.3e-37  Score=250.41  Aligned_cols=118  Identities=34%  Similarity=0.614  Sum_probs=110.4

Q ss_pred             CCccccccCcccCCccCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHhhHHHHHh
Q 038593            1 GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSS   80 (122)
Q Consensus         1 GlI~eeklDsFNiP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~Epll~~   80 (122)
                      |+|++||+|+||+|+|+||++||+++|+++|||+|+++|+++.+| ++.++..+...|...+|+.+|+++||++||+|++
T Consensus       240 GlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~~~~~-~~~~~~~~~~~d~~~~~~~~a~~~RA~~e~~l~~  318 (359)
T d1m6ex_         240 GLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYW-SSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLD  318 (359)
T ss_dssp             TCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEET-TCCSSCTTCCSSTTTTTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeEeeeccc-ccccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999 8876543334566678999999999999999999


Q ss_pred             hhCChhHHHHHHHHHHHHHhhHHHhhcCCCeEEEEEEEeec
Q 038593           81 ICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVKK  121 (122)
Q Consensus        81 HFG~~~imdeLF~r~~~~v~~~~~~~~~~~~~~~~vsL~rk  121 (122)
                      |||++ |||+||+||+++|++ +++.++.+++++++||+||
T Consensus       319 hfg~~-i~D~lF~r~~~~v~~-~~~~~~~~~~~~~~sL~rK  357 (359)
T d1m6ex_         319 HFGEA-IIEDVFHRYKLLIIE-RMSKEKTKFINVIVSLIRK  357 (359)
T ss_dssp             HHCHH-HHHHHHHHHHHHHHH-HHHSSCCEEEEEEEEEEBC
T ss_pred             HcChH-HHHHHHHHHHHHHHh-hHhhcCCceEEEEEEEEec
Confidence            99999 999999999999999 9999999999999999998

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.32  E-value=4.9  Score=28.78  Aligned_cols=25  Identities=16%  Similarity=0.458  Sum_probs=21.1

Q ss_pred             cCCCHHHHHHHHHhhCceeEeeeeee
Q 038593           16 YAPYVDEVKQVIEREGSFDIHQLETF   41 (122)
Q Consensus        16 Y~Ps~eEv~~~Ie~eGsF~I~~le~~   41 (122)
                      +.||.+++...+++.| |+|+..+.+
T Consensus       202 ~lPsl~~~~~~~e~ag-f~v~~~~~~  226 (285)
T d1kpga_         202 RLPSIPMVQECASANG-FTVTRVQSL  226 (285)
T ss_dssp             CCCCHHHHHHHHHTTT-CEEEEEEEC
T ss_pred             CCCChhhHHHHHHHhc-hhhcccccc
Confidence            5799999999998877 888887655