Citrus Sinensis ID: 038595

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530----
Protein Sequence
QHISNLGPRKLVSLQDPENLTFGKTVESRNCSRLQEATTFYFAYKSRRLNKFLRHSDYRKKPENPNPNKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGGDRLENGIVNGEASIVGVESDPVYHEYDDDEEEEDVVESEMVDLEDIAGKGPSRRSVNVAETNGKVKDSKRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFL
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHcccccEEEcccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHcccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHcccccccccEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHccccHHHccccccccccccccccccccccccccccHHHHHHHcccccEEEEccccccccccHHHHcccccccEEEEEEcccccccccccccccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHccccccccccccccccccccccccccccccHHHHHHcccccEEEEEccccccccccHHHHHHHHHcccccEEEEEccccHHHHHccccccEEEEEEEcccHHHHHHccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHcccccccccccccHcccccEEEEEccccHHHHcccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHccccccEEcHHHccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEHHHcccccccHcccccccccccccccccccccHHHHHHHHHcccEEEEcccHHHEEHHcHHHHccccccEEEEEEEEcccccHcccccHHHHccEEEEEEccccccccccEcccccHHHHHHHHHHHHHHHHHHHcccccHHHHEEEHHHHccccccHHHHccccccccccccccccHHHHHHHHcccHEEEEccccccccHHHHHHHHHHHHccccEEEEEccccHHHHHHcccccEEEEEEccccHHHHHHccccccHHHHHHHc
Coil and Loop (DISEMBL)
qhisnlgprklvslqdpenltfgktvesrncsrlqEATTFYFAYKSRRLNkflrhsdyrkkpenpnpnkgklffisqtgTSKTLAKRLHALLTSNDllfdlvdpqtyepedlSKEALVLIVAsswedgkppeAAKFFMNWIDESANDFRVGSLllsnckfavfgvgsksYEKTFNMVAKDLSKKMRelgagevlpvvegdvdggelDVVFEDWSKRVVAILKSggdrlengivngeasivgvesdpvyheydddeeeedVVESEMVDlediagkgpsrrsvnvaetngkvkdskrdmvTPVIRASLEkqgykiigshsgvkICRWTksqlrgrggcykhsfygieshrcmeatpslacankcvfcwrhhtnpvgkswqwkmddpiEIVNTAIDLHAKMIKQmkgvpgeySIFVLLDFFyfgtvssaidkqipsndgeekeggvtlerlnegltprhcalslvgepimypeinTLVDELHRRRISTflvtnaqfpdkikllkpvtqlYVSVDAATKDslkaidrplfGDFWERFL
Flexible Loop (DISEMBL)
qhisnlgprklvslqdpenltfgktvesrncsrlqEATTFYFAYKSRRLNKFlrhsdyrkkpenpnpnkgklfFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVfgvgsksyeKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILksggdrlengivngeasivgvesdpvYHEYDDDEEEEDVVESEMVDlediagkgpsrrsvnvaetngkvkdskrdmvtPVIRAslekqgykiigshsgvkicrwtksqlrgrggCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIdkqipsndgeekeGGVTLerlnegltpRHCALSLVGEPIMYPEINTLVDELHRRRISTFlvtnaqfpdkikllKPVTQLYVSVDAatkdslkaidrplfGDFWERFL
Low Complexity Region (SEG)
QHISNLGPRKLVSLQDPENLTFGKTVESRNCSRLQEATTFYFAYKSRRLNKFLRHSDYRkkpenpnpnkGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGGDRLENGIVNGEASIVGVESDPVYHeydddeeeedvvesemvdledIAGKGPSRRSVNVAETNGKVKDSKRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFL
Disordered region (IsUnstruct)
****************************RNCSRLQEATTFYFAYKSRRLNKFLR*****************LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGGDRLENGIVNGEASIVGVE*******************************************************TPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAI*****************LERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWER**
Disordered Region (DISOPRED)
******************************CSRLQEATTFYFA***************************KLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGGDRLEN*************************************************************DSKR****P*****LEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFL
Disordered Region (DISEMBL)
QHISNLGPRKLVSLQDPENLTFGKTVESRNCSRLQEATTFYFAYKSRRLNKFLRHSDYRKKPENPNPNKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGGDRLENGIVNGEASIVGVESDPVYHE**************MVDLEDIAGKGPSRRSVNVAETNGKVKDSKRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIP*********GVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFL
Disordered Region (DISPRO)
************SLQDP****FGKTV*******LQEATTFYFAYKSRRLN**************PNPNKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGGD**************************************MV***DIAGK**********************MVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
QHISNLGPRKLVSLQDPENLTFGKTVESRNCSRLQEATTFYFAYKSRRLNKFLRHSDYRKKPENPNPNKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGGDRLENGIVNGEASIVGVESDPVYHEYDDDEEEEDVVESEMVDLEDIAGKGPSRRSVNVAETNGKVKDSKRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	534	2.2.26 [Sep-21-2011]
Q8RXN5	647	tRNA wybutosine-synthesiz	yes	no	0.842	0.695	0.626	1e-177
Q8H8N3	653	tRNA wybutosine-synthesiz	yes	no	0.838	0.686	0.580	1e-141
Q2KHP8	735	tRNA wybutosine-synthesiz	N/A	no	0.799	0.580	0.447	1e-115
Q9NV66	732	tRNA wybutosine-synthesiz	yes	no	0.790	0.576	0.438	1e-113
Q5REF9	732	tRNA wybutosine-synthesiz	yes	no	0.790	0.576	0.442	1e-112
Q8BJM7	721	tRNA wybutosine-synthesiz	yes	no	0.803	0.595	0.435	1e-111
Q08C92	730	tRNA wybutosine-synthesiz	yes	no	0.801	0.586	0.412	1e-109
Q08960	810	tRNA wybutosine-synthesiz	yes	no	0.726	0.479	0.380	9e-81
O59761	688	tRNA wybutosine-synthesiz	yes	no	0.730	0.566	0.398	1e-78
Q6NUM6	668	tRNA wybutosine-synthesiz	no	no	0.735	0.588	0.370	2e-78

>sp|Q8RXN5|TYW1_ARATH tRNA wybutosine-synthesizing protein 1 homolog OS=Arabidopsis thaliana GN=TYW1 PE=2 SV=1

 Score =  620 bits (1599), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 319/509 (62%), Positives = 373/509 (73%), Gaps = 59/509 (11%)

Query: 34  LQEATTFYFAYKSRRLNKFLRHSDYRKKPENPN----PNKGKLFFISQTGTSKTLAKRLH 89
           L  ATTFY  +K RRL K L++        NP+     ++GK+FFISQTGT+K LA+RLH
Sbjct: 16  LLSATTFYCIHKYRRL-KHLKNLSL-----NPSSTLKASRGKIFFISQTGTAKALAQRLH 69

Query: 90  ALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFR 149
            L  SND+ FD+VDP +YEPEDL KE LVL +AS+W+ GKPP+  +F +NW+ ESA DFR
Sbjct: 70  ELCASNDIAFDIVDPHSYEPEDLPKETLVLFIASTWDGGKPPKNGEFLVNWLGESAEDFR 129

Query: 150 VGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVV 209
           VGSLLLS+CKFAVFGVGS++Y +++N VAK+LS +M  LG  E++PV EGDVD GELD  
Sbjct: 130 VGSLLLSDCKFAVFGVGSRAYGESYNAVAKELSSRMIGLGGLEMIPVGEGDVDDGELDRA 189

Query: 210 FEDWSKRVVAILKSGGDRLENGIVNGEASIVGVESDPVYHEYDDDEEEEDVVESEMVDLE 269
           F+DW   V+ +LK G  +  NG+      I  VE D  Y++  D+E+E++  +  +VDLE
Sbjct: 190 FQDWCDGVIRVLKGGSAQETNGV---SQQIGAVEDDLEYYDSTDEEDEDNDADGGIVDLE 246

Query: 270 DIAGKGPSRRSVNVAETNGKVK----DSKRDMVTPVIRASLEKQGYKIIGSHSGVKICRW 325
           DIAGK PS+R       NG VK    D K++MVTPVIRASL KQGYKIIGSHSGVKICRW
Sbjct: 247 DIAGKAPSKR-------NGVVKVTKVDGKKEMVTPVIRASLTKQGYKIIGSHSGVKICRW 299

Query: 326 TKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPI 385
           TKSQLRGRGGCYKHSFYGIESHRCME TPSLACANKCVFCWRHHTNPVGKSWQWKMD+P 
Sbjct: 300 TKSQLRGRGGCYKHSFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGKSWQWKMDEPS 359

Query: 386 EIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTL 445
            IV  A+DLH  MIKQMKGVP                                   GVT 
Sbjct: 360 VIVKGALDLHKNMIKQMKGVP-----------------------------------GVTP 384

Query: 446 ERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQ 505
           E+L EGL PRHCALSLVGEPIMYPEIN LVDELH RRISTFLVTNAQFP+KI ++KP+TQ
Sbjct: 385 EKLQEGLNPRHCALSLVGEPIMYPEINALVDELHGRRISTFLVTNAQFPEKILMMKPITQ 444

Query: 506 LYVSVDAATKDSLKAIDRPLFGDFWERFL 534
           LYVSVDAATK+SLKAIDRPLF DFWERF+
Sbjct: 445 LYVSVDAATKESLKAIDRPLFADFWERFI 473

Probable component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8H8N3|TYW1_ORYSJ tRNA wybutosine-synthesizing protein 1 homolog OS=Oryza sativa subsp. japonica GN=TYW1 PE=2 SV=1

 Score =  503 bits (1296), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 289/498 (58%), Positives = 341/498 (68%), Gaps = 50/498 (10%)

Query: 41  YFAYKSRRLNKFLRHSDYRKKPENPNPNKGKLFFISQTGTSKTLAKRLHALLTSNDLLFD 100
           +F YKS RL    R++     P         L + S TGTSK LA  L   L    +   
Sbjct: 30  FFLYKSLRLR---RNNPPSPPPGQGPAPTPTLLYASATGTSKALAAGLSRRLAEAGVTAH 86

Query: 101 LVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKF 160
             D   ++P+DL    L+L+V  + + G PP AA F   W++ESA DFR G+ LLS  +F
Sbjct: 87  PADAAAFDPDDLPSLPLLLLVLPTHDGGAPPPAAAFLARWLEESAADFRAGAALLSGLRF 146

Query: 161 AVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAI 220
           AVFGVGS++Y +TFN  A+  S+ +R LGA EV+ V EGDVDGG+L+VVFE+W  RVV +
Sbjct: 147 AVFGVGSRAYGETFNAAARSFSRWLRALGAAEVVAVGEGDVDGGDLEVVFEEWCGRVVRV 206

Query: 221 LKSGGDRLENGIVNGEASIVGVESDPVYHEYDDDEEEEDVVESEMVDLEDIAGKGPSRR- 279
           +K  G+ +  G  NGE+       +    E  DD+++E+ V+   VD+EDIAGK P+ R 
Sbjct: 207 VK--GEEIGEGH-NGESDGFDELEE----EESDDDDDEEEVDGGEVDMEDIAGKAPAARR 259

Query: 280 ---SVNVAETNGKVKDSKRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGC 336
               V  A +NG  ++  RDMVTP+IR SLEKQGYKIIGSHSGVKICRWTKSQLRGRGGC
Sbjct: 260 RNGKVEGALSNGG-ENGVRDMVTPIIRTSLEKQGYKIIGSHSGVKICRWTKSQLRGRGGC 318

Query: 337 YKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHA 396
           YKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSW+WKMDDP++IVN AID H 
Sbjct: 319 YKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWKWKMDDPLDIVNAAIDQHT 378

Query: 397 KMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRH 456
           KM+KQMKGVP                                   GV  ERL EGL+PRH
Sbjct: 379 KMVKQMKGVP-----------------------------------GVKPERLAEGLSPRH 403

Query: 457 CALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKD 516
           CALSLVGEPIMYPEIN L+DELHRR ISTFLVTNAQFPDKIK LKP+TQLYVSVDAATK+
Sbjct: 404 CALSLVGEPIMYPEINVLIDELHRRHISTFLVTNAQFPDKIKTLKPITQLYVSVDAATKE 463

Query: 517 SLKAIDRPLFGDFWERFL 534
           SLKA+DRPLF DFWERFL
Sbjct: 464 SLKAVDRPLFSDFWERFL 481

Probable component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2KHP8|TYW1_XENLA tRNA wybutosine-synthesizing protein 1 homolog OS=Xenopus laevis GN=tyw1 PE=2 SV=1

 Score =  415 bits (1066), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/514 (44%), Positives = 300/514 (58%), Gaps = 87/514 (16%)

Query: 71  KLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPED------LSKEALVLIVASS 124
           K+F+ SQTGTSK  A  L   +T   L  +L++ + Y+P+D       SK   V +VA+ 
Sbjct: 84  KIFYGSQTGTSKGFAHLLAEEVTLLGLPVELINMKEYDPDDNLVEETTSKNICVFLVAT- 142

Query: 125 WEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKK 184
           + DGKPPE+A++F  W++E++NDFR G   L   ++AVFG+G+  Y   +N V K++ K 
Sbjct: 143 YTDGKPPESAEWFCKWLEEASNDFRFGKTYLKGMRYAVFGLGNSVYSTHYNTVGKNIDKW 202

Query: 185 MRELGAGEVLPVVEGDVD-----GGELDVVFEDWSKRVVAILKS--GGDR---------- 227
           +  L A  V+   EGD +      G ++  FE W ++ +  LK+   G++          
Sbjct: 203 LWMLSANRVMTRAEGDCNVVKSKHGSIESDFEAWKRKFLNRLKALLSGEKKPCSGKCKKG 262

Query: 228 --------------LENGIVNGEASIVGVESDPVYHEYDDDEEEEDVVESEMVDLEDIAG 273
                          E       +     E D      D + EE     S ++D+ED+ G
Sbjct: 263 KCKSKKKSSIESVEEEEEEEEKHSEHEDTEDDTFETSSDSEPEEHGEPGSGLIDVEDL-G 321

Query: 274 KGPS--RRSVNVAETN-----------GKVKDSKRDMVTPVIRASLEKQGYKIIGSHSGV 320
           K  S  ++S    ++N            K K+  R+M+TP ++ +L KQGY++IGSHSGV
Sbjct: 322 KAMSNMKKSKREHDSNTELGKSLQGDEAKEKEEPREMITPALQEALTKQGYRLIGSHSGV 381

Query: 321 KICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWK 380
           K+CRWTKS LRGRGGCYKH+FYGIESHRCME TPSLACANKCVFCWRHHTNPVG  W+WK
Sbjct: 382 KLCRWTKSMLRGRGGCYKHTFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGTEWRWK 441

Query: 381 MDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKE 440
           MD P  I+  AI  H  MIKQ KGVP                                  
Sbjct: 442 MDQPEMILEEAILNHQNMIKQFKGVP---------------------------------- 467

Query: 441 GGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLL 500
            GV  ER  EGL  +HCALSLVGEPIMYPEINT +  LH + IS+FLVTNAQFP++I+ L
Sbjct: 468 -GVKPERFEEGLAVKHCALSLVGEPIMYPEINTFLRLLHNQHISSFLVTNAQFPEEIRSL 526

Query: 501 KPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFL 534
           +PVTQLYVSVDA+TKDSLK IDRPLF DFW+RF+
Sbjct: 527 EPVTQLYVSVDASTKDSLKKIDRPLFKDFWQRFI 560

Probable component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA.

Xenopus laevis (taxid: 8355)

>sp|Q9NV66|TYW1_HUMAN tRNA wybutosine-synthesizing protein 1 homolog OS=Homo sapiens GN=TYW1 PE=2 SV=2

 Score =  408 bits (1049), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/520 (43%), Positives = 297/520 (57%), Gaps = 98/520 (18%)

Query: 71  KLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPED------LSKEALVLIVASS 124
           K+F+ SQTGT+K  A  L   +TS DL   +++ + Y+P+D       SK   V +VA+ 
Sbjct: 80  KIFYGSQTGTAKGFATVLAEAVTSLDLPVAIINLKEYDPDDHLIEEVTSKNVCVFLVAT- 138

Query: 125 WEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKK 184
           + DG P E+A++F  W++E++ DFR G   L   ++AVFG+G+ +Y   FN V K++ K 
Sbjct: 139 YTDGLPTESAEWFCKWLEEASIDFRFGKTYLKGMRYAVFGLGNSAYASHFNKVGKNVDKW 198

Query: 185 MRELGAGEVLPVVEGDVD-----GGELDVVFEDWSKRVVAILKS--GGDRLENGIVNGEA 237
           +  LGA  V+   EGD D      G ++  F  W  + ++ L++   G+R ++    G  
Sbjct: 199 LWMLGAHRVMSRGEGDCDVVKSKHGSIEADFRAWKTKFISQLQALQKGERKKS--CGGHC 256

Query: 238 SIVGVESDPVYHEYDDDEEEEDVVESEMVDLEDIAGKG---------------PSRRSVN 282
                ES    H++  +E EE   E + +   D   +                 S  S+ 
Sbjct: 257 KKGKCES----HQHGSEEREEGSHEQDELHHRDTEEEEPFESSSEEEFGGEDHQSLNSIV 312

Query: 283 VAETNGKVKD----------------------------SKRDMVTPVIRASLEKQGYKII 314
             E  GK+ D                             +R M+TP +R +L KQGY++I
Sbjct: 313 DVEDLGKIMDHVKKEKREKEQQEEKSGLFRNMGRNEDGERRAMITPALREALTKQGYQLI 372

Query: 315 GSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVG 374
           GSHSGVK+CRWTKS LRGRGGCYKH+FYGIESHRCME TPSLACANKCVFCWRHHTNPVG
Sbjct: 373 GSHSGVKLCRWTKSMLRGRGGCYKHTFYGIESHRCMETTPSLACANKCVFCWRHHTNPVG 432

Query: 375 KSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSN 434
             W+WKMD P  I+  AI+ H  MIKQ KGVP                            
Sbjct: 433 TEWRWKMDQPEMILKEAIENHQNMIKQFKGVP---------------------------- 464

Query: 435 DGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFP 494
                  GV  ER  EG+T +HCALSLVGEPIMYPEIN  +  LH+ +IS+FLVTNAQFP
Sbjct: 465 -------GVKAERFEEGMTVKHCALSLVGEPIMYPEINRFLKLLHQCKISSFLVTNAQFP 517

Query: 495 DKIKLLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFL 534
            +I+ L+PVTQLYVSVDA+TKDSLK IDRPLF DFW+RFL
Sbjct: 518 AEIRNLEPVTQLYVSVDASTKDSLKKIDRPLFKDFWQRFL 557

Probable component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA.

Homo sapiens (taxid: 9606)

>sp|Q5REF9|TYW1_PONAB tRNA wybutosine-synthesizing protein 1 homolog OS=Pongo abelii GN=TYW1 PE=2 SV=1

 Score =  407 bits (1046), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/520 (44%), Positives = 296/520 (56%), Gaps = 98/520 (18%)

Query: 71  KLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPED------LSKEALVLIVASS 124
           K+F+ SQTGT+K  A  L   +TS DL   +++ + Y+P+D       SK   V +VA+ 
Sbjct: 80  KIFYGSQTGTAKGFATVLAEAVTSLDLPVAIINLKEYDPDDHLIEEVTSKNVCVFLVAT- 138

Query: 125 WEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKK 184
           + DG P E+A++F  W++E+A DFR G   L   ++AVFG+G+ +Y   FN V K++ K 
Sbjct: 139 YTDGLPTESAEWFCKWLEEAAIDFRFGKTYLKGMRYAVFGLGNSAYASHFNKVGKNVDKW 198

Query: 185 MRELGAGEVLPVVEGDVD-----GGELDVVFEDWSKRVVAILKS--GGDRLENGIVNGEA 237
           +  LGA  V+   EGD D      G ++  F  W  + ++ L++   G+R ++    G  
Sbjct: 199 LWMLGAHRVMSRGEGDCDVVKSKHGSIEADFRAWKTKFISQLQALQKGERKKS--CGGHC 256

Query: 238 SIVGVESDPVYHEYDDDEEEEDVVESEMVDLEDIAGK------------GPSRRSVNV-- 283
                ES    H+   +E EE   E + +   D   +            G   +S+N   
Sbjct: 257 KKGKCES----HQRGSEEREEGSHEQDELHHRDTEEEEPFESSSEEEFGGKDHQSLNSIV 312

Query: 284 -AETNGKVKDSK----------------------------RDMVTPVIRASLEKQGYKII 314
             E  GK+ D                              R M+TP +R +L KQGY++I
Sbjct: 313 DVEDLGKIMDHVKKEKREKEQREEKSGLFRNMGRNEDGEIRAMITPALREALTKQGYQLI 372

Query: 315 GSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVG 374
           GSHSGVK+CRWTKS LRGRGGCYKH+FYGIESHRCME TPSLACANKCVFCWRHHTNPVG
Sbjct: 373 GSHSGVKLCRWTKSMLRGRGGCYKHTFYGIESHRCMETTPSLACANKCVFCWRHHTNPVG 432

Query: 375 KSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSN 434
             W+WKMD P  I+  AI+ H  MIKQ KGVP                            
Sbjct: 433 TEWRWKMDQPEMILKEAIENHQNMIKQFKGVP---------------------------- 464

Query: 435 DGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFP 494
                  GV  ER  EG+T +HCALSLVGEPIMYPEIN  +  LH+ +IS+FLVTNAQFP
Sbjct: 465 -------GVKAERFEEGMTVKHCALSLVGEPIMYPEINRFLKLLHQCKISSFLVTNAQFP 517

Query: 495 DKIKLLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFL 534
            +I+ L+PVTQLYVSVDA+TKDSLK IDRPLF DFW RFL
Sbjct: 518 AEIRNLEPVTQLYVSVDASTKDSLKKIDRPLFKDFWRRFL 557

Probable component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA.

Pongo abelii (taxid: 9601)

>sp|Q8BJM7|TYW1_MOUSE tRNA wybutosine-synthesizing protein 1 homolog OS=Mus musculus GN=Tyw1 PE=1 SV=1

 Score =  402 bits (1034), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/510 (43%), Positives = 296/510 (58%), Gaps = 81/510 (15%)

Query: 71  KLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPED-----LSKEALVLIVASSW 125
           K+F+ SQTGT+K  A  L   +TS DL   +++ + Y+P+D     ++ + +   + +++
Sbjct: 72  KIFYGSQTGTAKGFAVVLAKAVTSLDLPVAIINLKEYDPDDSLIGEITSKTVCAFLVATY 131

Query: 126 EDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKM 185
            DG P E+A++F  W++ESANDFR G   L   ++AVFG+G  +Y   FN V+ ++ K +
Sbjct: 132 TDGCPTESAEWFCKWLEESANDFRFGKTYLKGLRYAVFGLGDSAYRSHFNKVSTNVDKWL 191

Query: 186 RELGAGEVLPVVEGDVDG-----GELDVVFEDWSKRVVAILKS---------GGDRLENG 231
             LGA  VL   EGD +      G ++  F  W  + ++ L++         GG+     
Sbjct: 192 WMLGAQRVLTRGEGDCNAVQSKHGSIEADFTAWKTKFISRLQALQRGEKKACGGNCKRGK 251

Query: 232 IVNGEASIVGVESDPVYHEYDDDEEEEDVVE---------------SEMVDLEDIAG-KG 275
             + +         P    +  D EEE+  E               + +VD+ED+     
Sbjct: 252 CESAQHGPGEARPHPQGELHPGDAEEEEPCESSSEDELGTQDYQSLTSVVDVEDLGNIMN 311

Query: 276 PSRRSVN-VAETNGKVKDSK----------RDMVTPVIRASLEKQGYKIIGSHSGVKICR 324
           P +R     +  +GK    +          R M+TP +R +L KQGY++IGSHSGVK+CR
Sbjct: 312 PVKREKREKSHQDGKAAMQRNPEKTEDGEGRAMITPALREALTKQGYQLIGSHSGVKLCR 371

Query: 325 WTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDP 384
           WTKS LRGRGGCYKH+FYGIESHRCMEATPSLACANKCVFCWRHHTNPVG  W+WKMD P
Sbjct: 372 WTKSMLRGRGGCYKHTFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGTEWRWKMDQP 431

Query: 385 IEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVT 444
             I+  AI+ H  MIKQ KGVP                                   G+ 
Sbjct: 432 ELILKEAIENHQNMIKQFKGVP-----------------------------------GLK 456

Query: 445 LERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVT 504
            ER  EG+  +HCALSLVGEPIMYPEIN L+  LH+  IS+FLVTNAQFP++I+ L PVT
Sbjct: 457 AERFEEGMEVKHCALSLVGEPIMYPEINRLLKLLHQHGISSFLVTNAQFPEEIRKLTPVT 516

Query: 505 QLYVSVDAATKDSLKAIDRPLFGDFWERFL 534
           QLYVSVDA+T+D LK IDRPLF DFW+RFL
Sbjct: 517 QLYVSVDASTRDGLKKIDRPLFKDFWQRFL 546

Probable component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA.

Mus musculus (taxid: 10090)

>sp|Q08C92|TYW1_DANRE tRNA wybutosine-synthesizing protein 1 homolog OS=Danio rerio GN=tyw1 PE=2 SV=1

 Score =  397 bits (1019), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/512 (41%), Positives = 297/512 (58%), Gaps = 84/512 (16%)

Query: 71  KLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPED-LSKEA----LVLIVASSW 125
           K+F+ SQTGT+K  AK L   + +  +  +++D + ++PED L++E     + + + +++
Sbjct: 80  KVFYGSQTGTAKGFAKELAEDVIAQGIQCEVIDMKDFDPEDRLAEECTSKIICVFLVATY 139

Query: 126 EDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKM 185
            DG+P E+A++F  W++E++ DFR G   L   ++AVFG+G+  Y   FN V+K + K +
Sbjct: 140 TDGQPTESAEWFCKWLEEASTDFRYGKTYLKGMRYAVFGLGNSVYVGHFNTVSKSIDKWL 199

Query: 186 RELGAGEVLPVVEGDVD-----GGELDVVFEDWSKRVVAILKSGGDRLENGIVNGEASIV 240
             L A  ++   EGD +      G +   F+ W  + +  L++   + E    +G     
Sbjct: 200 WMLSAARIMTRGEGDCNVVKSRHGSVQADFQVWKGKFLNRLQALA-KGEKKACSGNCKKA 258

Query: 241 GVESDPVYHEYDDDEEE-----------------------EDVVESEMVDLEDIAG---- 273
             ++   + E  +D                          ++     ++D+ED+      
Sbjct: 259 SCKNKKKHKEEAEDNHSLAEKNNSEEELMESSSDEESSSEDEKSHGSVIDMEDLGNVMNH 318

Query: 274 -----------KGPSRRSVNVAETNGKVKDSKRDMVTPVIRASLEKQGYKIIGSHSGVKI 322
                      +  S+R     E   + ++ +R+M+TP +R SL KQGYK+IGSHSGVK+
Sbjct: 319 MKKAKQRMEEDEEDSQRVKQNGERKSECEEERREMITPALRDSLTKQGYKLIGSHSGVKL 378

Query: 323 CRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMD 382
            RWTKS LRGRGGCYKH+FYGIESHRCME TPSLACANKCVFCWRHHTNPVG  W+WKMD
Sbjct: 379 RRWTKSMLRGRGGCYKHTFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGTEWRWKMD 438

Query: 383 DPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGG 442
              +I+  A++ H  MI+Q +GVP                                   G
Sbjct: 439 PAEKIIQEAMENHRNMIRQFRGVP-----------------------------------G 463

Query: 443 VTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKP 502
           V  ER  EGLT +HCALSLVGEPIMYPEIN+ +  LH++ IS+FLVTNAQFP++I+ L P
Sbjct: 464 VRPERFEEGLTVKHCALSLVGEPIMYPEINSFLKLLHQQNISSFLVTNAQFPEEIRSLVP 523

Query: 503 VTQLYVSVDAATKDSLKAIDRPLFGDFWERFL 534
           VTQLYVSVDA+TKDSLK IDRPLF DFW+RFL
Sbjct: 524 VTQLYVSVDASTKDSLKKIDRPLFKDFWQRFL 555

Probable component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA.

Danio rerio (taxid: 7955)

>sp|Q08960|TYW1_YEAST tRNA wybutosine-synthesizing protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TYW1 PE=1 SV=1

 Score =  301 bits (771), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 186/489 (38%), Positives = 263/489 (53%), Gaps = 101/489 (20%)

Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLS-----------KEALVLI 120
           + + S  G +   AK ++  L   D L +  +P+    +DLS           + AL ++
Sbjct: 207 VLYSSLQGAASKAAKSVYDKLKELDELTN--EPKLLNLDDLSDFDDYFINVPVENALYVL 264

Query: 121 VASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSN-CKFAVFGVG-SKSYEKTFNMVA 178
           V  S++   P +   +F+  ++E+ANDFRV S  L     + V G+G S+S+ + F   A
Sbjct: 265 VLPSYDIDCPLD---YFLQTLEENANDFRVDSFPLRKLVGYTVLGLGDSESWPEKFCYQA 321

Query: 179 KDLSKKMRELGAGEVLPVVEGDV---DGGELDVVFEDWSKRVVAILKSGGDRLENGIVNG 235
           K     +  LG   + P+  G V    GG   +  ++W+  +   LK             
Sbjct: 322 KRADHWISRLGGRRIFPL--GKVCMKTGGSAKI--DEWTSLLAETLK------------- 364

Query: 236 EASIVGVESDPVYHEYDDD-----EEEEDVVESEMVDLEDIAGKGPSRRSVNVAETNGKV 290
                  + +P+ +EYD++     +EEE     E+ D+EDI GKG          +NGK 
Sbjct: 365 -------DDEPIIYEYDENADSEEDEEEGNGSDELGDVEDIGGKG----------SNGKF 407

Query: 291 K--DSKRDMV---TPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIE 345
              D  + MV   +P  + +L KQGYK+IGSHSGVKICRWTK++LRG+G CYK S + I 
Sbjct: 408 SGADEIKQMVAKDSPTYK-NLTKQGYKVIGSHSGVKICRWTKNELRGKGSCYKKSLFNIA 466

Query: 346 SHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGV 405
           S RCME TPSLAC++KCVFCWRH TNPV K+W+W++D+P  I+  A+  H  MIKQM+GV
Sbjct: 467 SSRCMELTPSLACSSKCVFCWRHGTNPVSKNWRWEVDEPEYILENALKGHYSMIKQMRGV 526

Query: 406 PGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEP 465
           P                                   GV  ER  +    RHCALSLVGEP
Sbjct: 527 P-----------------------------------GVIAERFAKAFEVRHCALSLVGEP 551

Query: 466 IMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKDSLKAIDRPL 525
           I+YP IN  +  LH++ I++FLV NAQ P+ ++ +  VTQLYVS+DA TK  LK +DRPL
Sbjct: 552 ILYPHINKFIQLLHQKGITSFLVCNAQHPEALRNIVKVTQLYVSIDAPTKTELKKVDRPL 611

Query: 526 FGDFWERFL 534
           + DFWER +
Sbjct: 612 YKDFWERMV 620

Component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA. Probably catalyzes tricyclic formation of wybutosine from tRNA(Phe) methylated on guanosine-37.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O59761|TYW1_SCHPO tRNA wybutosine-synthesizing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tyw1 PE=3 SV=1

 Score =  294 bits (752), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 191/479 (39%), Positives = 255/479 (53%), Gaps = 89/479 (18%)

Query: 72  LFFISQTGTSKTLAKRLH----ALLTSND---LLFDLVDPQTYE---PEDLSKEALVLIV 121
           +F+ +  GT++  AK++H    +LL  +D   L  D VD   Y    PE+    A+ L+V
Sbjct: 93  VFYSTLGGTAERYAKQVHEELSSLLQRDDIQLLNLDYVDLSEYFVSCPEN----AIYLVV 148

Query: 122 ASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCK-FAVFGVGS-KSYE-KTFNMVA 178
             S+E      +  ++++ + ES +DFRV    L     +AVFG+G  ++Y    F   A
Sbjct: 149 LPSYE---IESSIDYYLSSLQESFSDFRVPKDPLHGLSGYAVFGLGDMENYPGDKFCYQA 205

Query: 179 KDLSKKMRELGAGEVLP--VVEGDVD-GGELDVVFEDWSKRVVAILKSGGDRLENGIVNG 235
               K +++LGA  + P  VV   +    ++D + + W++ V   LK           NG
Sbjct: 206 IQADKWIKKLGARRLAPLGVVNTQLAPTAQIDALLQ-WTRSVAECLK-----------NG 253

Query: 236 EASIVGVESDPVYHEYDDDEEEEDVVESEMVDLEDIAGKGPSRRSVNVAETNGKVKDSKR 295
               +G                 D + S+++D+ED+       ++        K   S  
Sbjct: 254 TLLKIG---------------NTDSLSSDVMDVEDMGSMMAKAKAEAALPVGTKEMVSTE 298

Query: 296 DMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPS 355
              +P  +A L KQGY ++GSHSGVKICRWTKS +RGRG CYK+SFYGI SH CMEATPS
Sbjct: 299 ---SPTYKA-LTKQGYSVVGSHSGVKICRWTKSAMRGRGFCYKYSFYGIRSHLCMEATPS 354

Query: 356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLL 415
           LACANKC FCWRH TNPVG SW+WK+D P  I+   +  H   +K MKGVP         
Sbjct: 355 LACANKCTFCWRHGTNPVGTSWRWKVDPPEMILQGILKAHYAKLKLMKGVP--------- 405

Query: 416 DFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLV 475
                                     GV  +R  E    RHCALSLVGEPI YP IN  V
Sbjct: 406 --------------------------GVLPDRYEEASRVRHCALSLVGEPIFYPYINEFV 439

Query: 476 DELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFL 534
             LH R IS+FLVTNAQ P+ ++ +  VTQLYVSVDA+TK SLK++DRPLF DFWER L
Sbjct: 440 SMLHEREISSFLVTNAQHPEALRNMGMVTQLYVSVDASTKQSLKSVDRPLFKDFWERML 498

Component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA. Probably catalyzes tricyclic formation of wybutosine from tRNA(Phe) methylated on guanosine-37.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6NUM6|TYW1B_HUMAN tRNA wybutosine-synthesizing protein 1 homolog B OS=Homo sapiens GN=TYW1B PE=2 SV=2

 Score =  293 bits (750), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 187/505 (37%), Positives = 246/505 (48%), Gaps = 112/505 (22%)

Query: 84  LAKRLHALLTSNDLLFDLVDPQTYEPED------LSKEALVLIVASSWEDGKPPEAAKFF 137
            A  L   +TS DL   +++ + Y+P+D       SK   V +VA+ + DG P E+A++F
Sbjct: 47  FATVLAEAVTSLDLPVAIINLKEYDPDDHLIEEVTSKNVCVFLVAT-YTDGLPTESAEWF 105

Query: 138 MNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVV 197
             W++E++ DFR G   L   + AVFG+G+ +Y   FN V K++ K +  LG   V+   
Sbjct: 106 CKWLEEASIDFRFGKTYLKGMRDAVFGLGNSAYASHFNKVGKNVDKWLWMLGVHRVMSRG 165

Query: 198 EGDVD-----GGELDVVFEDWSKRVVAILKSGGDRLENGIVNGEASIVGVESDPVYHEYD 252
           EGD D      G ++  F  W  + ++ L++           G       ES    H++ 
Sbjct: 166 EGDCDVVKSKHGSIEANFRAWKTKFISQLQALQKGERKKSCGGHCKKGKCES----HQHG 221

Query: 253 DDEEEEDVVESEMVDLEDIAGKG---------------PSRRSVNVAETNGKVKD----- 292
            +E EE   E + +   D   +                 S  S+   E  GK+ D     
Sbjct: 222 SEEREEGSQEQDELHHRDTKEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKE 281

Query: 293 -----------------------SKRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQ 329
                                   +R M+TP +R +L KQ                    
Sbjct: 282 KREKEQQEEKSGLFRNMGRNEDGERRAMITPALREALTKQ-----------------VDA 324

Query: 330 LRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVN 389
            R R     H  +  ESHRCME TPSLACANKCVFCW HH NPVG  W WKMD P  I+ 
Sbjct: 325 PRERSLLQTHILWN-ESHRCMETTPSLACANKCVFCWWHHNNPVGTEWLWKMDQPEMILK 383

Query: 390 TAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLN 449
            AI+ H  MIKQ KGVP                                   GV  ER  
Sbjct: 384 EAIENHQNMIKQFKGVP-----------------------------------GVKAERFE 408

Query: 450 EGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVS 509
           EG+T +HCALSLVGEPIMYPEIN  +  LH+ +IS+FLVTNAQFP +I+ L+PVTQLYVS
Sbjct: 409 EGMTVKHCALSLVGEPIMYPEINRFLKLLHQCKISSFLVTNAQFPAEIRNLEPVTQLYVS 468

Query: 510 VDAATKDSLKAIDRPLFGDFWERFL 534
           VDA+TKDSLK IDRPLF DFW++FL
Sbjct: 469 VDASTKDSLKKIDRPLFKDFWQQFL 493

Probable component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	534
352091100	640	flavodoxin family protein [Dimocarpus lo	0.852	0.710	0.761	0.0
449469983	640	PREDICTED: tRNA wybutosine-synthesizing	0.840	0.701	0.676	0.0
224065581	592	predicted protein [Populus trichocarpa]	0.784	0.707	0.717	0.0
255538634	630	cytochrome P450, putative [Ricinus commu	0.825	0.7	0.661	0.0
356552109	642	PREDICTED: tRNA wybutosine-synthesizing	0.837	0.696	0.643	1e-180
225458291	654	PREDICTED: tRNA wybutosine-synthesizing	0.846	0.691	0.654	1e-179
297842267	647	flavodoxin family protein [Arabidopsis l	0.850	0.701	0.633	1e-177
22330642	647	tRNA wybutosine-synthesizing protein 1-l	0.842	0.695	0.626	1e-175
10092280	654	unknown protein; 42527-45275 [Arabidopsi	0.842	0.688	0.618	1e-173
356564272	646	PREDICTED: tRNA wybutosine-synthesizing	0.823	0.681	0.629	1e-171

>gi|352091100|gb|AEQ61825.1| flavodoxin family protein [Dimocarpus longan]

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/498 (76%), Positives = 407/498 (81%), Gaps = 43/498 (8%)

Query: 37  ATTFYFAYKSRRLNKFLRHSDYRKKPENPNPNKGKLFFISQTGTSKTLAKRLHALLTSND 96
           ATTFYF YKSRRLNK L  S   K P+NP    GKLF+ISQTGT +TLAKRLH+ LT+  
Sbjct: 17  ATTFYFVYKSRRLNKLLNLSLTPKTPQNPR--NGKLFYISQTGTCRTLAKRLHSRLTALG 74

Query: 97  LLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLS 156
           L FDLVDP+ YEPEDL  E LVLIVAS+WEDGKPP+AAKFF +W+ ESA DFRVGSLLLS
Sbjct: 75  LPFDLVDPRNYEPEDLPNETLVLIVASTWEDGKPPDAAKFFADWLTESATDFRVGSLLLS 134

Query: 157 NCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
           +CKFAVFGVGS +YEKTFN VA+DLS+KMR LGA E+ PVV+GDV+ GELD VFEDWSKR
Sbjct: 135 HCKFAVFGVGSSAYEKTFNAVARDLSEKMRGLGAAEIFPVVDGDVEDGELDAVFEDWSKR 194

Query: 217 VVAILKSGGDRLENGIVNGEASIVGVESDPVYHEYDDDEEEEDVVESEMVDLEDIAGKGP 276
           VVA+  S GD + NG   G   +VGVESD      D+D++EE+ VESE+VDLEDIAGKGP
Sbjct: 195 VVAV--SLGD-VANG---GVERVVGVESDDFDDGGDEDDDEEEEVESEVVDLEDIAGKGP 248

Query: 277 SRRSVNVAETNGKVKDSKRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGC 336
           SRRSVNVAETN K+ D KR+MVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGC
Sbjct: 249 SRRSVNVAETNRKLSDGKRNMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGC 308

Query: 337 YKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHA 396
           YKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDP+EIVNTAIDLH 
Sbjct: 309 YKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPLEIVNTAIDLHT 368

Query: 397 KMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRH 456
           KMIKQMKGVP                                   GVT ERL EGLTPRH
Sbjct: 369 KMIKQMKGVP-----------------------------------GVTEERLTEGLTPRH 393

Query: 457 CALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKD 516
           CALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKL KPVTQLYVSVDAATKD
Sbjct: 394 CALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLRKPVTQLYVSVDAATKD 453

Query: 517 SLKAIDRPLFGDFWERFL 534
           SLKAIDRPLFGDFWERFL
Sbjct: 454 SLKAIDRPLFGDFWERFL 471

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469983|ref|XP_004152698.1| PREDICTED: tRNA wybutosine-synthesizing protein 1 homolog [Cucumis sativus]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/507 (67%), Positives = 388/507 (76%), Gaps = 58/507 (11%)

Query: 34  LQEATTFYFAYKSRRLNKFLRHSDYRKKPENPN--PNKGKLFFISQTGTSKTLAKRLHAL 91
           L  A+T Y  YKSRRL K        K   NP     K KLFFISQTGTSK LA RL  +
Sbjct: 15  LLSASTLYCFYKSRRLRKL-------KLSLNPTLPSRKPKLFFISQTGTSKALAHRLLNV 67

Query: 92  LTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVG 151
           L SN L+FDLVDP+ YEPEDL KE LVL VAS+WEDG PP  AKF  NW+ ESA DFRVG
Sbjct: 68  LNSNGLVFDLVDPKDYEPEDLFKETLVLFVASTWEDGGPPPHAKFLANWLSESAEDFRVG 127

Query: 152 SLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFE 211
           SLLLS CKF+VFGVGS+ Y +TFN VA+D SK+++ LGA E+LP+ EGDVDGG++D  F+
Sbjct: 128 SLLLSQCKFSVFGVGSRVYGETFNAVARDFSKRLKALGAKEILPIGEGDVDGGDIDKCFD 187

Query: 212 DWSKRVVAILK----SGGDRLENGIVNGEASIVGVESDPVYHEYDDDEEEEDVVESEMVD 267
           DWS++++ ++K      G  L +GI  G++  V VE D        +EE++D+ E ++VD
Sbjct: 188 DWSRKLLKVMKFDAEGNGVELCSGIA-GDSDAVSVEED--------EEEDDDLGEEDIVD 238

Query: 268 LEDIAGKGPSRRSVNVAETNGKVKDSKRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTK 327
           LEDIAGKGPSR+S N+ ETNGK+ + K+ MVTPVIRASLEKQGYKIIGSHSGVKICRWTK
Sbjct: 239 LEDIAGKGPSRKSTNIVETNGKL-NGKKVMVTPVIRASLEKQGYKIIGSHSGVKICRWTK 297

Query: 328 SQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEI 387
           SQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQW+MDDP+EI
Sbjct: 298 SQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWEMDDPLEI 357

Query: 388 VNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLER 447
           VN+AIDLH KMIKQMKGVP                                   GVT E+
Sbjct: 358 VNSAIDLHTKMIKQMKGVP-----------------------------------GVTQEK 382

Query: 448 LNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLY 507
           L EGL+PRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLY
Sbjct: 383 LEEGLSPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLY 442

Query: 508 VSVDAATKDSLKAIDRPLFGDFWERFL 534
           VSVDAATK+SLKAIDRPLFGDFWERF+
Sbjct: 443 VSVDAATKESLKAIDRPLFGDFWERFI 469

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065581|ref|XP_002301868.1| predicted protein [Populus trichocarpa] gi|222843594|gb|EEE81141.1| predicted protein [Populus trichocarpa]

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/471 (71%), Positives = 383/471 (81%), Gaps = 52/471 (11%)

Query: 71  KLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKP 130
           KLFFISQTGTSKTLA RLH LL SN+L FDL+DPQ YEPEDL KE LV+I+AS+WEDGKP
Sbjct: 1   KLFFISQTGTSKTLAHRLHNLLASNNLHFDLIDPQNYEPEDLFKEKLVIIIASTWEDGKP 60

Query: 131 PEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGA 190
           P+ AKFF NW+ ESA+DFRVGSL+LS CKFAVFGVGS++Y +TFN VAKD S+++R+LGA
Sbjct: 61  PQNAKFFANWLAESADDFRVGSLMLSECKFAVFGVGSRAYGETFNAVAKDFSRRLRDLGA 120

Query: 191 GEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGGDRLENGIVNGEASIVGVESDPVYHE 250
            EV+ V EGDVDGGELD VFE+WS R+  +LK  G+ +ENG V G   +V  ES      
Sbjct: 121 KEVVGVGEGDVDGGELDGVFEEWSGRLARVLK--GESVENGEVCGNGVVVIDES------ 172

Query: 251 YDDDEEEEDVVESEMVDLEDIAGKGPSRRSVNVAETNGKVK------DSKRDMVTPVIRA 304
             DD+E++  VES+++DLEDIAGKGPSRRS+ VA++NGK+       + +++MVTPVIRA
Sbjct: 173 --DDDEDDGGVESDIIDLEDIAGKGPSRRSLAVAQSNGKLNGENGKLNGQKEMVTPVIRA 230

Query: 305 SLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESH-RCMEATPSLACANKCV 363
           SLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESH RCMEATPSLACANKCV
Sbjct: 231 SLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHSRCMEATPSLACANKCV 290

Query: 364 FCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTV 423
           FCWRHHTNPVGKSWQWKMDDP+EIVN+AIDLH KMIKQMKGVP                 
Sbjct: 291 FCWRHHTNPVGKSWQWKMDDPLEIVNSAIDLHTKMIKQMKGVP----------------- 333

Query: 424 SSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRI 483
                             GVTLERLNEGL+PRHCALSLVGEPIMYPEINTLVDELHRR+I
Sbjct: 334 ------------------GVTLERLNEGLSPRHCALSLVGEPIMYPEINTLVDELHRRQI 375

Query: 484 STFLVTNAQFPDKIKLLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFL 534
           STFLVTNAQFP+KI +LKPVTQLYVSVDAATK+SLKAIDRPLFGDFWERF+
Sbjct: 376 STFLVTNAQFPEKILMLKPVTQLYVSVDAATKESLKAIDRPLFGDFWERFI 426

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538634|ref|XP_002510382.1| cytochrome P450, putative [Ricinus communis] gi|223551083|gb|EEF52569.1| cytochrome P450, putative [Ricinus communis]

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/497 (66%), Positives = 369/497 (74%), Gaps = 56/497 (11%)

Query: 39  TFYFAYKSRRLNKFLRHSDYRKKPENPNPNKGKLFFISQTGTSKTLAKRLHALLTSNDLL 98
           TFY  YKSRRL K L+ S         + N+GKLFFISQTGTSK LA+RLH L   NDL 
Sbjct: 20  TFYCFYKSRRL-KQLKTSFIPTAV--TSSNRGKLFFISQTGTSKALAQRLHILFKLNDLS 76

Query: 99  FDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNC 158
            DL+D + YEPEDL KE LV+IVAS+WEDGKPP  A FF NW+ ESA+DFRVGSLLLSNC
Sbjct: 77  LDLIDAKDYEPEDLCKENLVIIVASTWEDGKPPSNADFFANWLAESADDFRVGSLLLSNC 136

Query: 159 KFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVV 218
           KFAVFGVGS++Y  +FN  AKD SK++RELGA E++ + EGDVD GE+D  FE+WS +VV
Sbjct: 137 KFAVFGVGSRAYGDSFNAAAKDFSKRLRELGANEIVAIGEGDVDSGEIDAAFEEWSGKVV 196

Query: 219 AILKSGGDRLENGIVNGEASIVGVESDPVYHEYDDDEEEEDVVESEMVDLEDIAGKGPSR 278
            +LK G   LENG +  E+    V  D    +  D+E  E  +ES +VDLEDIAGKGPSR
Sbjct: 197 GVLKGGS--LENGFIGCESENDNVVVDDDDFQSSDEENGE--LESGIVDLEDIAGKGPSR 252

Query: 279 RSVN-VAETNGKVKDSKRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCY 337
           R  N V ETN K    K             + GYKIIGSHSGVKICRWTKSQLRGRGGCY
Sbjct: 253 RRFNAVTETNSKPNGQK-------------EMGYKIIGSHSGVKICRWTKSQLRGRGGCY 299

Query: 338 KHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAK 397
           KHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGK+WQWKMDDP+EIVN+AID H K
Sbjct: 300 KHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKNWQWKMDDPLEIVNSAIDQHTK 359

Query: 398 MIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHC 457
           MIKQMKGVP                                   GVT+ERLNEGL+PRHC
Sbjct: 360 MIKQMKGVP-----------------------------------GVTMERLNEGLSPRHC 384

Query: 458 ALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKDS 517
           ALSLVGEPIMYPEINTLV+ELH+RRISTFLVTNAQFP+KIK+LKPVTQLYVSVDAATK+S
Sbjct: 385 ALSLVGEPIMYPEINTLVNELHQRRISTFLVTNAQFPEKIKMLKPVTQLYVSVDAATKES 444

Query: 518 LKAIDRPLFGDFWERFL 534
           LKAIDRPLFGDFWERF+
Sbjct: 445 LKAIDRPLFGDFWERFI 461

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552109|ref|XP_003544413.1| PREDICTED: tRNA wybutosine-synthesizing protein 1 homolog isoform 2 [Glycine max]

 Score =  639 bits (1648), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 321/499 (64%), Positives = 371/499 (74%), Gaps = 52/499 (10%)

Query: 37  ATTFYFAYKSRRLNKFLRHSDYRKKPENPNPNKGKLFFISQTGTSKTLAKRLHALLTSND 96
           ATTFY  YK  RL    RH   +           K+ F+S+TGTSKTLA+RLH LL SND
Sbjct: 22  ATTFYCLYKYHRL----RH--LKLFLNPNPNPNPKIIFVSETGTSKTLARRLHGLLASND 75

Query: 97  LLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLS 156
           + FDLVD Q YEPEDL KE L+++VAS+W DG P  A++FF  W+ ++A DFR GSLLLS
Sbjct: 76  VAFDLVDAQHYEPEDLPKETLIILVASTWLDGAPSAASRFFATWLADAAADFRAGSLLLS 135

Query: 157 NCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
            C+FAVFGVGS++Y  +FN VA+ L+K +R LGA EV+P+ EGDVDGG++D VF+ W ++
Sbjct: 136 RCRFAVFGVGSRAYGDSFNAVARGLAKHLRALGAAEVVPLFEGDVDGGDVDAVFDRWCEK 195

Query: 217 VVAILKSGGDRLENGIVNGEASIVGVESDPVYHEYDDDEEEEDVVESEMVDLEDIAGKGP 276
           VVA+LKSG   +     N  A   GV S          E+E DV  SE+VDLEDIAGK P
Sbjct: 196 VVAVLKSGS--VVESCDNDGAEESGVVSS--------SEDESDVDSSEIVDLEDIAGKAP 245

Query: 277 S-RRSVNVAETNGKVKDSKRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGG 335
           S R++V   E + +  + +R+MVTPVIRA+LEKQGYKIIGSHSGVK+CRWTK+QLRGRGG
Sbjct: 246 SWRKAVANGEESNEKLNGRREMVTPVIRANLEKQGYKIIGSHSGVKLCRWTKAQLRGRGG 305

Query: 336 CYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLH 395
           CYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQW+MDDPIEIVN+AIDLH
Sbjct: 306 CYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWQMDDPIEIVNSAIDLH 365

Query: 396 AKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPR 455
             MIKQMKGVP                                   GVTLERL+EGL+PR
Sbjct: 366 TNMIKQMKGVP-----------------------------------GVTLERLSEGLSPR 390

Query: 456 HCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATK 515
           HCALSLVGEPIMYP IN LVDELH+RRISTFLVTNAQFP+KIK LKPVTQLYVSVDAATK
Sbjct: 391 HCALSLVGEPIMYPGINALVDELHKRRISTFLVTNAQFPEKIKSLKPVTQLYVSVDAATK 450

Query: 516 DSLKAIDRPLFGDFWERFL 534
           DSLKAIDRPLFGDFWERF+
Sbjct: 451 DSLKAIDRPLFGDFWERFI 469

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458291|ref|XP_002281468.1| PREDICTED: tRNA wybutosine-synthesizing protein 1 homolog [Vitis vinifera]

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 327/500 (65%), Positives = 387/500 (77%), Gaps = 48/500 (9%)

Query: 41  YFAYKSRRLNKFLRHSDYRKKPENPNPN-KGKLFFISQTGTSKTLAKRLHALLTSNDLLF 99
           Y  YKS RL    RH+       NPN + KGKLFF+SQTGTS+ LA+RL  LLTS DL F
Sbjct: 26  YCFYKSLRLK---RHA-LLFPTTNPNSSSKGKLFFVSQTGTSEILARRLLRLLTSCDLSF 81

Query: 100 DLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCK 159
           DLV P+ YEPEDLSKE LVLIVAS+WEDG PP  A FF NW+ ESA+DFRVGS+LLS CK
Sbjct: 82  DLVHPKDYEPEDLSKETLVLIVASTWEDGNPPPDAGFFSNWLAESADDFRVGSMLLSRCK 141

Query: 160 FAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVA 219
           FAVFGVGS+SY   FN VA+  SK+MR+LG  +VLPV EGDVD G+LD VF+ WS+++++
Sbjct: 142 FAVFGVGSRSYGAAFNAVARGFSKRMRKLGGLQVLPVEEGDVDAGDLDEVFDVWSRKLIS 201

Query: 220 ILKSGGDRLENGIVNGEASIVGVESDPVYHEYDDDEEEE-----DVVESEMVDLEDIAGK 274
           +LK G   +ENG+ +G  ++V  +++ +    +D ++++     +  E  +VDLEDIAGK
Sbjct: 202 VLKGGS--VENGVFDGSMAVVESDAETIDGSEEDYDDDDDADRENGAEGSIVDLEDIAGK 259

Query: 275 GPSRRSVNVAETNGKVKDSKRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRG 334
           GPSR++  +  ++G + + +++MVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRG
Sbjct: 260 GPSRKTKTMTTSSGTI-NGEKEMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRG 318

Query: 335 GCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDL 394
           GCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSW+WKMDDP+EIVN+AIDL
Sbjct: 319 GCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWRWKMDDPLEIVNSAIDL 378

Query: 395 HAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTP 454
           H KMI+QMKGVP                                   GV  ERL+EGL+P
Sbjct: 379 HTKMIRQMKGVP-----------------------------------GVKAERLSEGLSP 403

Query: 455 RHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAAT 514
           RHCALSLVGEPIMYPEIN+L++ELHRRRISTFLVTNAQFP+KIK LKPVTQLYVSVDAAT
Sbjct: 404 RHCALSLVGEPIMYPEINSLIEELHRRRISTFLVTNAQFPEKIKELKPVTQLYVSVDAAT 463

Query: 515 KDSLKAIDRPLFGDFWERFL 534
           KDSLKAIDRPLFGDFWERF+
Sbjct: 464 KDSLKAIDRPLFGDFWERFV 483

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842267|ref|XP_002889015.1| flavodoxin family protein [Arabidopsis lyrata subsp. lyrata] gi|297334856|gb|EFH65274.1| flavodoxin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  629 bits (1621), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 320/505 (63%), Positives = 371/505 (73%), Gaps = 51/505 (10%)

Query: 34  LQEATTFYFAYKSRRLNKFLRHSDYRKKPENPNPNKGKLFFISQTGTSKTLAKRLHALLT 93
           L  ATTFY  +K RRL +    S          P++GK+FFISQTGT+K LA+RLH L  
Sbjct: 16  LLSATTFYCIHKYRRLKRLKNLS--LNPSSTSKPSRGKIFFISQTGTAKALAQRLHELCA 73

Query: 94  SNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSL 153
           SND+ FDLVDP++YEPEDL KE LVL +AS+W+ GKPP+  +F +NW+ ESA DFRVGSL
Sbjct: 74  SNDIAFDLVDPRSYEPEDLPKENLVLFIASTWDGGKPPKNGEFLVNWLGESAEDFRVGSL 133

Query: 154 LLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDW 213
           LLS+CKFAVFGVGS++Y +++N VAK+LS +M  LG  E++PV EGDVD GELD  F+DW
Sbjct: 134 LLSDCKFAVFGVGSRAYGESYNAVAKELSSRMIGLGGLEMIPVGEGDVDDGELDRAFQDW 193

Query: 214 SKRVVAILKSGGDRLENGIVNGEASIVGVESDPVYHEYDDDEEEEDVVESEMVDLEDIAG 273
              V+ +LK G     NG+      I  VE+D  Y++  DDE+E++  +  +VDLEDIAG
Sbjct: 194 CGGVIGVLKGGSAEETNGV---SQQIGAVENDLEYYDSTDDEDEDNDADGGIVDLEDIAG 250

Query: 274 KGPSRRSVNVAETNGKVK----DSKRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQ 329
           K PS+R       NG VK    D K++MVTPVIRASL KQGYKIIGSHSGVKICRWTKSQ
Sbjct: 251 KAPSKR-------NGVVKVTKVDGKKEMVTPVIRASLTKQGYKIIGSHSGVKICRWTKSQ 303

Query: 330 LRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVN 389
           LRGRGGCYKHSFYGIESHRCME TPSLACANKCVFCWRHHTNPVGKSWQWKMD+P  IV 
Sbjct: 304 LRGRGGCYKHSFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGKSWQWKMDEPSVIVK 363

Query: 390 TAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLN 449
            A+DLH KMIKQMKGVP                                   GVT E+L 
Sbjct: 364 GALDLHTKMIKQMKGVP-----------------------------------GVTPEKLQ 388

Query: 450 EGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVS 509
           EGL PRHCALSLVGEPIMYPEIN LVDELH RRISTFLVTNAQFP+KI ++KP+TQLYVS
Sbjct: 389 EGLNPRHCALSLVGEPIMYPEINALVDELHGRRISTFLVTNAQFPEKILMMKPITQLYVS 448

Query: 510 VDAATKDSLKAIDRPLFGDFWERFL 534
           VDAATK+SLKAIDRPLF DFWERF+
Sbjct: 449 VDAATKESLKAIDRPLFADFWERFI 473

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330642|ref|NP_177656.2| tRNA wybutosine-synthesizing protein 1-like protein [Arabidopsis thaliana] gi|75158883|sp|Q8RXN5.1|TYW1_ARATH RecName: Full=tRNA wybutosine-synthesizing protein 1 homolog gi|19423975|gb|AAL87267.1| unknown protein [Arabidopsis thaliana] gi|21281261|gb|AAM45053.1| unknown protein [Arabidopsis thaliana] gi|332197566|gb|AEE35687.1| tRNA wybutosine-synthesizing protein 1-like protein [Arabidopsis thaliana]

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 319/509 (62%), Positives = 373/509 (73%), Gaps = 59/509 (11%)

Query: 34  LQEATTFYFAYKSRRLNKFLRHSDYRKKPENPN----PNKGKLFFISQTGTSKTLAKRLH 89
           L  ATTFY  +K RRL K L++        NP+     ++GK+FFISQTGT+K LA+RLH
Sbjct: 16  LLSATTFYCIHKYRRL-KHLKNLSL-----NPSSTLKASRGKIFFISQTGTAKALAQRLH 69

Query: 90  ALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFR 149
            L  SND+ FD+VDP +YEPEDL KE LVL +AS+W+ GKPP+  +F +NW+ ESA DFR
Sbjct: 70  ELCASNDIAFDIVDPHSYEPEDLPKETLVLFIASTWDGGKPPKNGEFLVNWLGESAEDFR 129

Query: 150 VGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVV 209
           VGSLLLS+CKFAVFGVGS++Y +++N VAK+LS +M  LG  E++PV EGDVD GELD  
Sbjct: 130 VGSLLLSDCKFAVFGVGSRAYGESYNAVAKELSSRMIGLGGLEMIPVGEGDVDDGELDRA 189

Query: 210 FEDWSKRVVAILKSGGDRLENGIVNGEASIVGVESDPVYHEYDDDEEEEDVVESEMVDLE 269
           F+DW   V+ +LK G  +  NG+      I  VE D  Y++  D+E+E++  +  +VDLE
Sbjct: 190 FQDWCDGVIRVLKGGSAQETNGV---SQQIGAVEDDLEYYDSTDEEDEDNDADGGIVDLE 246

Query: 270 DIAGKGPSRRSVNVAETNGKVK----DSKRDMVTPVIRASLEKQGYKIIGSHSGVKICRW 325
           DIAGK PS+R       NG VK    D K++MVTPVIRASL KQGYKIIGSHSGVKICRW
Sbjct: 247 DIAGKAPSKR-------NGVVKVTKVDGKKEMVTPVIRASLTKQGYKIIGSHSGVKICRW 299

Query: 326 TKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPI 385
           TKSQLRGRGGCYKHSFYGIESHRCME TPSLACANKCVFCWRHHTNPVGKSWQWKMD+P 
Sbjct: 300 TKSQLRGRGGCYKHSFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGKSWQWKMDEPS 359

Query: 386 EIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTL 445
            IV  A+DLH  MIKQMKGVP                                   GVT 
Sbjct: 360 VIVKGALDLHKNMIKQMKGVP-----------------------------------GVTP 384

Query: 446 ERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQ 505
           E+L EGL PRHCALSLVGEPIMYPEIN LVDELH RRISTFLVTNAQFP+KI ++KP+TQ
Sbjct: 385 EKLQEGLNPRHCALSLVGEPIMYPEINALVDELHGRRISTFLVTNAQFPEKILMMKPITQ 444

Query: 506 LYVSVDAATKDSLKAIDRPLFGDFWERFL 534
           LYVSVDAATK+SLKAIDRPLF DFWERF+
Sbjct: 445 LYVSVDAATKESLKAIDRPLFADFWERFI 473

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10092280|gb|AAG12693.1|AC025814_17 unknown protein; 42527-45275 [Arabidopsis thaliana]

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 319/516 (61%), Positives = 373/516 (72%), Gaps = 66/516 (12%)

Query: 34  LQEATTFYFAYKSRRLNKFLRHSDYRKKPENPN----PNKGKLFFISQTGTSKTLAKRLH 89
           L  ATTFY  +K RRL K L++        NP+     ++GK+FFISQTGT+K LA+RLH
Sbjct: 16  LLSATTFYCIHKYRRL-KHLKNLSL-----NPSSTLKASRGKIFFISQTGTAKALAQRLH 69

Query: 90  ALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFR 149
            L  SND+ FD+VDP +YEPEDL KE LVL +AS+W+ GKPP+  +F +NW+ ESA DFR
Sbjct: 70  ELCASNDIAFDIVDPHSYEPEDLPKETLVLFIASTWDGGKPPKNGEFLVNWLGESAEDFR 129

Query: 150 VGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVV 209
           VGSLLLS+CKFAVFGVGS++Y +++N VAK+LS +M  LG  E++PV EGDVD GELD  
Sbjct: 130 VGSLLLSDCKFAVFGVGSRAYGESYNAVAKELSSRMIGLGGLEMIPVGEGDVDDGELDRA 189

Query: 210 FEDWSKRVVAILKSGGDRLENGIVNGEASIVGVESDPVYHEYDDDEEEEDVVESEMVDLE 269
           F+DW   V+ +LK G  +  NG+      I  VE D  Y++  D+E+E++  +  +VDLE
Sbjct: 190 FQDWCDGVIRVLKGGSAQETNGV---SQQIGAVEDDLEYYDSTDEEDEDNDADGGIVDLE 246

Query: 270 DIAGKGPSRRSVNVAETNGKVK----DSKRDMVTPVIRASLEK-------QGYKIIGSHS 318
           DIAGK PS+R       NG VK    D K++MVTPVIRASL K       QGYKIIGSHS
Sbjct: 247 DIAGKAPSKR-------NGVVKVTKVDGKKEMVTPVIRASLTKQHDFYLLQGYKIIGSHS 299

Query: 319 GVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQ 378
           GVKICRWTKSQLRGRGGCYKHSFYGIESHRCME TPSLACANKCVFCWRHHTNPVGKSWQ
Sbjct: 300 GVKICRWTKSQLRGRGGCYKHSFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGKSWQ 359

Query: 379 WKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEE 438
           WKMD+P  IV  A+DLH  MIKQMKGVP                                
Sbjct: 360 WKMDEPSVIVKGALDLHKNMIKQMKGVP-------------------------------- 387

Query: 439 KEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIK 498
              GVT E+L EGL PRHCALSLVGEPIMYPEIN LVDELH RRISTFLVTNAQFP+KI 
Sbjct: 388 ---GVTPEKLQEGLNPRHCALSLVGEPIMYPEINALVDELHGRRISTFLVTNAQFPEKIL 444

Query: 499 LLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFL 534
           ++KP+TQLYVSVDAATK+SLKAIDRPLF DFWERF+
Sbjct: 445 MMKPITQLYVSVDAATKESLKAIDRPLFADFWERFI 480

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564272|ref|XP_003550379.1| PREDICTED: tRNA wybutosine-synthesizing protein 1 homolog [Glycine max]

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 325/516 (62%), Positives = 372/516 (72%), Gaps = 76/516 (14%)

Query: 34  LQEATTFYFAYKSRRLNKFLRHSDYRKKPENPNPNKGKLFFISQTGTSKTLAKRLHALLT 93
           L  ATTFY  YKSRRL    RH      P        K+ F+S+TGT+KTLA+RLH LL+
Sbjct: 19  LFSATTFYCLYKSRRL----RHLKLSLNPNPNPNPNPKILFLSETGTAKTLARRLHRLLS 74

Query: 94  SNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSL 153
           SND+ FDLVD Q YEPEDL KE L+L+VAS+W+DG  P A++FF  W+ ++A DFR GSL
Sbjct: 75  SNDVAFDLVDAQHYEPEDLPKETLILLVASTWQDGAAPAASRFFATWLADAAADFRAGSL 134

Query: 154 LLSNCKFAVFGVGSKSY-EKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELD-VVFE 211
           LLS C+FAVFGVGS++Y + +FN VAK L+  +R LGA E +P+ EGD+DGG+    VF+
Sbjct: 135 LLSRCRFAVFGVGSRAYGDDSFNAVAKGLAMHLRALGATEAVPLSEGDIDGGDDVDAVFD 194

Query: 212 DWSKRVVAILKSGGDRLENGIVNGEASIVGVESDPVYHEYDDDEEEE-----------DV 260
            W ++VVA+LK  G                     V    D+D  EE           DV
Sbjct: 195 RWCEKVVAVLKGVG---------------------VVESCDNDGAEECGVVSSSEEESDV 233

Query: 261 VESEMVDLEDIAGKGPSRRSV--NVAETNGKVKDSKRDMVTPVIRASLEKQGYKIIGSHS 318
             SE+VDLEDIAGK PSRR V  N  E+NGK+  S R+MVTPVIRA+LEKQGYKIIGSHS
Sbjct: 234 ESSEIVDLEDIAGKAPSRRKVVANGEESNGKLNGS-REMVTPVIRANLEKQGYKIIGSHS 292

Query: 319 GVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQ 378
           GVK+CRWTK+QLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQ
Sbjct: 293 GVKLCRWTKAQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQ 352

Query: 379 WKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEE 438
           W+MDDPIEIVN+AIDLH  MIKQMKGVP                                
Sbjct: 353 WQMDDPIEIVNSAIDLHTNMIKQMKGVP-------------------------------- 380

Query: 439 KEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIK 498
              GVTLERL+EGL+PRHCALSLVGEPIMYPEIN LVDELH+RRISTFLVTNAQFP+KIK
Sbjct: 381 ---GVTLERLSEGLSPRHCALSLVGEPIMYPEINALVDELHKRRISTFLVTNAQFPEKIK 437

Query: 499 LLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFL 534
            LKP+TQLYVSVDAATKDSLKAIDRPLFGDFWERF+
Sbjct: 438 SLKPITQLYVSVDAATKDSLKAIDRPLFGDFWERFI 473

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	534
TAIR|locus:2025152	647	AT1G75200 [Arabidopsis thalian	0.685	0.565	0.617	1.4e-161
UNIPROTKB|Q9NV66	732	TYW1 "tRNA wybutosine-synthesi	0.224	0.163	0.727	1.7e-109
UNIPROTKB|E1BL71	729	TYW1 "Uncharacterized protein"	0.213	0.156	0.754	6.1e-109
MGI|MGI:2141161	721	Tyw1 "tRNA-yW synthesizing pro	0.222	0.165	0.741	7.2e-109
UNIPROTKB|F1NVK4	715	LOC100858466 "Uncharacterized	0.234	0.174	0.698	2.4e-108
UNIPROTKB|F1Q0A0	714	TYW1 "Uncharacterized protein"	0.222	0.166	0.741	3.1e-108
UNIPROTKB|F1RJJ2	732	TYW1 "Uncharacterized protein"	0.211	0.154	0.761	1.1e-107
ZFIN|ZDB-GENE-060929-688	754	tyw1 "tRNA-yW synthesizing pro	0.245	0.173	0.664	2e-107
POMBASE|SPCC1020.08	688	SPCC1020.08 "wybutosine biosyn	0.202	0.156	0.678	3.9e-79
ASPGD|ASPL0000058313	786	AN0502 [Emericella nidulans (t	0.501	0.340	0.420	2.9e-76

TAIR|locus:2025152 AT1G75200 [Arabidopsis thaliana (taxid:3702)]

 Score = 1174 (418.3 bits), Expect = 1.4e-161, Sum P(2) = 1.4e-161
 Identities = 231/374 (61%), Positives = 269/374 (71%)

Query:    34 LQEATTFYFAYKSRRLNKFLRHSDYRXXXXXXXXXXGKLFFISQTGTSKTLAKRLHALLT 93
             L  ATTFY  +K RRL K L++              GK+FFISQTGT+K LA+RLH L  
Sbjct:    16 LLSATTFYCIHKYRRL-KHLKNLSLNPSSTLKASR-GKIFFISQTGTAKALAQRLHELCA 73

Query:    94 SNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSL 153
             SND+ FD+VDP +YEPEDL KE LVL +AS+W+ GKPP+  +F +NW+ ESA DFRVGSL
Sbjct:    74 SNDIAFDIVDPHSYEPEDLPKETLVLFIASTWDGGKPPKNGEFLVNWLGESAEDFRVGSL 133

Query:   154 LLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDW 213
             LLS+CKFAVFGVGS++Y +++N VAK+LS +M  LG  E++PV EGDVD GELD  F+DW
Sbjct:   134 LLSDCKFAVFGVGSRAYGESYNAVAKELSSRMIGLGGLEMIPVGEGDVDDGELDRAFQDW 193

Query:   214 SKRVVAILKSGGDRLENGIVNGEASIVGVESDPVYHXXXXXXXXXXXXXXXXXXXXXIAG 273
                V+ +LK G  +  NG+      I  VE D  Y+                     IAG
Sbjct:   194 CDGVIRVLKGGSAQETNGV---SQQIGAVEDDLEYYDSTDEEDEDNDADGGIVDLEDIAG 250

Query:   274 KGPSRRSVNVAETNGKVKDSKRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGR 333
             K PS+R+  V  T  KV D K++MVTPVIRASL KQGYKIIGSHSGVKICRWTKSQLRGR
Sbjct:   251 KAPSKRNGVVKVT--KV-DGKKEMVTPVIRASLTKQGYKIIGSHSGVKICRWTKSQLRGR 307

Query:   334 GGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAID 393
             GGCYKHSFYGIESHRCME TPSLACANKCVFCWRHHTNPVGKSWQWKMD+P  IV  A+D
Sbjct:   308 GGCYKHSFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGKSWQWKMDEPSVIVKGALD 367

Query:   394 LHAKMIKQMKGVPG 407
             LH  MIKQMKGVPG
Sbjct:   368 LHKNMIKQMKGVPG 381

GO:0003824 "catalytic activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q9NV66 TYW1 "tRNA wybutosine-synthesizing protein 1 homolog" [Homo sapiens (taxid:9606)]

 Score = 513 (185.6 bits), Expect = 1.7e-109, Sum P(3) = 1.7e-109
 Identities = 88/121 (72%), Positives = 101/121 (83%)

Query:   288 GKVKDS-KRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIES 346
             G+ +D  +R M+TP +R +L KQGY++IGSHSGVK+CRWTKS LRGRGGCYKH+FYGIES
Sbjct:   345 GRNEDGERRAMITPALREALTKQGYQLIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIES 404

Query:   347 HRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVP 406
             HRCME TPSLACANKCVFCWRHHTNPVG  W+WKMD P  I+  AI+ H  MIKQ KGVP
Sbjct:   405 HRCMETTPSLACANKCVFCWRHHTNPVGTEWRWKMDQPEMILKEAIENHQNMIKQFKGVP 464

Query:   407 G 407
             G
Sbjct:   465 G 465

GO:0005506 "iron ion binding" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

UNIPROTKB|E1BL71 TYW1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 510 (184.6 bits), Expect = 6.1e-109, Sum P(3) = 6.1e-109
 Identities = 86/114 (75%), Positives = 97/114 (85%)

Query:   294 KRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEAT 353
             +R M+TP +R +L KQGY++IGSHSGVK+CRWTKS LRGRGGCYKH+FYGIESHRCME T
Sbjct:   351 RRAMITPALREALTKQGYQLIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIESHRCMETT 410

Query:   354 PSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPG 407
             PSLACANKCVFCWRHHTNPVG  W+WKMD P  I+  AI+ H  MIKQ KGVPG
Sbjct:   411 PSLACANKCVFCWRHHTNPVGTEWRWKMDQPEMILKEAIENHQNMIKQFKGVPG 464

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

MGI|MGI:2141161 Tyw1 "tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 515 (186.3 bits), Expect = 7.2e-109, Sum P(3) = 7.2e-109
 Identities = 89/120 (74%), Positives = 101/120 (84%)

Query:   289 KVKDSK-RDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESH 347
             K +D + R M+TP +R +L KQGY++IGSHSGVK+CRWTKS LRGRGGCYKH+FYGIESH
Sbjct:   335 KTEDGEGRAMITPALREALTKQGYQLIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIESH 394

Query:   348 RCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPG 407
             RCMEATPSLACANKCVFCWRHHTNPVG  W+WKMD P  I+  AI+ H  MIKQ KGVPG
Sbjct:   395 RCMEATPSLACANKCVFCWRHHTNPVGTEWRWKMDQPELILKEAIENHQNMIKQFKGVPG 454

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008033 "tRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|F1NVK4 LOC100858466 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 510 (184.6 bits), Expect = 2.4e-108, Sum P(3) = 2.4e-108
 Identities = 88/126 (69%), Positives = 103/126 (81%)

Query:   283 VAETNG-KVKDSKRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSF 341
             + ET+G K    +R+M+T  +R +L KQGYK+IGSHSGVK+CRWTKS LRGRGGCYKH+F
Sbjct:   323 LGETSGRKEAGERREMITAALRDALTKQGYKLIGSHSGVKLCRWTKSMLRGRGGCYKHTF 382

Query:   342 YGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQ 401
             YGIESHRCMEATPSLACANKCVFCWRHHTNPVG  W+WKMD P  I+  A++ H  MIK+
Sbjct:   383 YGIESHRCMEATPSLACANKCVFCWRHHTNPVGTEWRWKMDQPEMILREALENHRNMIKE 442

Query:   402 MKGVPG 407
              KGV G
Sbjct:   443 FKGVTG 448

GO:0005506 "iron ion binding" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

UNIPROTKB|F1Q0A0 TYW1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 515 (186.3 bits), Expect = 3.1e-108, Sum P(3) = 3.1e-108
 Identities = 89/120 (74%), Positives = 101/120 (84%)

Query:   289 KVKDS-KRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESH 347
             K +DS +R M+TP +R +L KQGY++IGSHSGVK+CRWTKS LRGRGGCYKH+FYGIESH
Sbjct:   328 KNEDSERRTMITPALREALTKQGYQLIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIESH 387

Query:   348 RCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPG 407
             RCME TPSLACANKCVFCWRHHTNPVG  W+WKMD P  I+  AI+ H  MIKQ KGVPG
Sbjct:   388 RCMETTPSLACANKCVFCWRHHTNPVGTEWRWKMDQPEMILKEAIENHQNMIKQFKGVPG 447

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|F1RJJ2 TYW1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 507 (183.5 bits), Expect = 1.1e-107, Sum P(3) = 1.1e-107
 Identities = 86/113 (76%), Positives = 96/113 (84%)

Query:   295 RDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATP 354
             R M+TP +R +L KQGY++IGSHSGVK+CRWTKS LRGRGGCYKH+FYGIESHRCME TP
Sbjct:   351 RAMITPALREALTKQGYQLIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIESHRCMETTP 410

Query:   355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPG 407
             SLACANKCVFCWRHHTNPVG  W+WKMD P  I+  AI+ H  MIKQ KGVPG
Sbjct:   411 SLACANKCVFCWRHHTNPVGTEWRWKMDQPDIILKEAIENHQNMIKQFKGVPG 463

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

ZFIN|ZDB-GENE-060929-688 tyw1 "tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 517 (187.1 bits), Expect = 2.0e-107, Sum P(3) = 2.0e-107
 Identities = 87/131 (66%), Positives = 105/131 (80%)

Query:   277 SRRSVNVAETNGKVKDSKRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGC 336
             S+R     E   + ++ +R+M+TP +R SL KQGYK+IGSHSGVK+CRWTKS LRGRGGC
Sbjct:   357 SQRVKQNGERKSECEEERREMITPALRDSLTKQGYKLIGSHSGVKLCRWTKSMLRGRGGC 416

Query:   337 YKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHA 396
             YKH+FYGIESHRCME TPSLACANKCVFCWRHHTNPVG  W+WKMD   +I+  A++ H 
Sbjct:   417 YKHTFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGTEWRWKMDPAEKIIQEAMENHR 476

Query:   397 KMIKQMKGVPG 407
              MI+Q +GVPG
Sbjct:   477 NMIRQFRGVPG 487

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

POMBASE|SPCC1020.08 SPCC1020.08 "wybutosine biosynthesis protein Tyw1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 424 (154.3 bits), Expect = 3.9e-79, Sum P(3) = 3.9e-79
 Identities = 74/109 (67%), Positives = 85/109 (77%)

Query:   299 TPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLAC 358
             +P  +A L KQGY ++GSHSGVKICRWTKS +RGRG CYK+SFYGI SH CMEATPSLAC
Sbjct:   299 SPTYKA-LTKQGYSVVGSHSGVKICRWTKSAMRGRGFCYKYSFYGIRSHLCMEATPSLAC 357

Query:   359 ANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPG 407
             ANKC FCWRH TNPVG SW+WK+D P  I+   +  H   +K MKGVPG
Sbjct:   358 ANKCTFCWRHGTNPVGTSWRWKVDPPEMILQGILKAHYAKLKLMKGVPG 406

GO:0005506 "iron ion binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0010181 "FMN binding" evidence=IEA

GO:0016020 "membrane" evidence=NAS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0031591 "wybutosine biosynthetic process" evidence=ISO

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

ASPGD|ASPL0000058313 AN0502 [Emericella nidulans (taxid:162425)]

 Score = 496 (179.7 bits), Expect = 2.9e-76, Sum P(2) = 2.9e-76
 Identities = 122/290 (42%), Positives = 159/290 (54%)

Query:   137 FMNWIDESANDFRVGSLLLSNCK-FAVFGVGSK----SYEKTFNMVAKDLSKKMREL-GA 190
             F+  +DE+ +DFR+ +  LS    +AVFG G K    + E+ F   AK+L + M +L   
Sbjct:   213 FLGHLDETHHDFRIDTGSLSTLAGYAVFGFGDKEGWPTEEEGFCSQAKELDRWMAKLTNK 272

Query:   191 GEVLPVVEGDVDGGELDVVFEDWSKRVVAIL----KSGGDRLENGIVNGEASIVGVE--S 244
                 P+  GDV     D   ++WS  +  IL    K+GG  L  G+      +   E  S
Sbjct:   273 KRAYPLGFGDVKSNA-DASLKEWSAGLQDILSDIVKNGG--LGEGVPGSGDPLESDEELS 329

Query:   245 DPVYHXXXXXXXXXXXXXXXXXXXXXIAGKGPSRRSVNVAE--TNGKVKD---SKRDMV- 298
             D                         +   G +  S    +  T+G  +D   ++++MV 
Sbjct:   330 DDEDSGSGKSKARRKPQSVVDLEDIKMGSNGQAVGSPIPVDFTTSGASRDVQPTEKEMVP 389

Query:   299 -TPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLA 357
              T    ASL KQGY I+GSHSGVKICRWTKS LRGRG CYK SFYGI SH CMEATPSL+
Sbjct:   390 KTSPTYASLTKQGYTIVGSHSGVKICRWTKSALRGRGSCYKFSFYGIRSHLCMEATPSLS 449

Query:   358 CANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPG 407
             C+NKC+FCWRH TNPVG +W+WK+D P  I N A + H K IK M+GVPG
Sbjct:   450 CSNKCIFCWRHGTNPVGTTWRWKVDSPELIFNGAKEGHYKKIKMMRGVPG 499

GO:0003824 "catalytic activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0031591 "wybutosine biosynthetic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RXN5	TYW1_ARATH	No assigned EC number	0.6267	0.8426	0.6955	yes	no
Q8H8N3	TYW1_ORYSJ	No assigned EC number	0.5803	0.8389	0.6860	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	534
PRK13762	322	PRK13762, PRK13762, tRNA-modifying enzyme; Provisi	5e-76
TIGR03972	297	TIGR03972, rSAM_TYW1, wyosine biosynthesis protein	7e-74
COG0731	296	COG0731, COG0731, Fe-S oxidoreductases [Energy pro	2e-42
pfam00258	142	pfam00258, Flavodoxin_1, Flavodoxin	3e-23
TIGR01931	597	TIGR01931, cysJ, sulfite reductase [NADPH] flavopr	5e-18
PRK10953	600	PRK10953, cysJ, sulfite reductase subunit alpha; P	6e-17
COG0369	587	COG0369, CysJ, Sulfite reductase, alpha subunit (f	3e-16
COG0716	151	COG0716, FldA, Flavodoxins [Energy production and	3e-06
TIGR01753	140	TIGR01753, flav_short, flavodoxin, short chain	1e-05
PRK09267	169	PRK09267, PRK09267, flavodoxin FldA; Validated	2e-04
PRK06703	151	PRK06703, PRK06703, flavodoxin; Provisional	4e-04
PRK09004	146	PRK09004, PRK09004, FMN-binding protein MioC; Prov	0.003
TIGR01752	167	TIGR01752, flav_long, flavodoxin, long chain	0.004

>gnl|CDD|237493 PRK13762, PRK13762, tRNA-modifying enzyme; Provisional

 Score =  242 bits (620), Expect = 5e-76
 Identities = 98/246 (39%), Positives = 131/246 (53%), Gaps = 38/246 (15%)

Query: 292 DSKRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCME 351
           +  R M+   I   L KQGY I+G HS VK+C WTK  L+G   CYK  FYGIESHRC++
Sbjct: 1   EGLRIMIPSEIAKILRKQGYHIVGRHSAVKLCHWTKKALKGGRSCYKSKFYGIESHRCVQ 60

Query: 352 ATPSLA-CANKCVFCWRHHTNPVGKS-WQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEY 409
            TP +A C  +C+FCWR     VG    + + DDP EIV  +I    K++   KG P   
Sbjct: 61  MTPVVAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNP--- 117

Query: 410 SIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYP 469
                                            V  E+  E + P+H A+SL GEP +YP
Sbjct: 118 --------------------------------KVDREKFEEAMEPKHVAISLSGEPTLYP 145

Query: 470 EINTLVDELHRRRISTFLVTNAQFPDKI-KLLKPVTQLYVSVDAATKDSLKAIDRPLFGD 528
            +  L++E H+R  +TFLVTN   PD + KL +  TQLYVS+DA  +++ K I+RP+  D
Sbjct: 146 YLPELIEEFHKRGFTTFLVTNGTRPDVLEKLEEEPTQLYVSLDAPDEETYKKINRPVIPD 205

Query: 529 FWERFL 534
            WER L
Sbjct: 206 AWERIL 211

Length = 322

>gnl|CDD|234423 TIGR03972, rSAM_TYW1, wyosine biosynthesis protein TYW1

 Score =  236 bits (604), Expect = 7e-74
 Identities = 98/235 (41%), Positives = 126/235 (53%), Gaps = 37/235 (15%)

Query: 302 IRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLA-CAN 360
           I+ +L KQGY  +G HS VK C WTK  L G   CYK  FYGIESHRC++ TP+LA C  
Sbjct: 1   IKKALRKQGYHFVGRHSAVKPCHWTKKALTGGRSCYKSKFYGIESHRCVQMTPTLAWCNQ 60

Query: 361 KCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYF 420
           +C+FCWR   + VG+ W    DDP +IV  +I    K++   KG P              
Sbjct: 61  RCLFCWRPLEHDVGEEWDETKDDPEDIVEESIKAQRKLLSGYKGNP-------------- 106

Query: 421 GTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHR 480
                                 V  E+  E L P+H A+SL GEP +YP +  L++E H+
Sbjct: 107 ---------------------KVDREKWEEALEPKHVAISLSGEPTLYPRLPELIEEFHK 145

Query: 481 RRISTFLVTNAQFPDKI-KLLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFL 534
           R  +TFLVTN   PD + KL    TQLYVS+DA  K++ K I RP+  D WER L
Sbjct: 146 RGFTTFLVTNGTRPDVLEKLEAEPTQLYVSLDAPDKETYKRICRPVIPDAWERIL 200

Members of this protein family are the archaeal protein TWY1, a radical SAM protein that catalyzes the second step in creating the wye-bases, wyosine and derivatives such as wybutosine, for tRNA base modification [Protein synthesis, tRNA and rRNA base modification]. Length = 297

>gnl|CDD|223803 COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion]

 Score =  153 bits (388), Expect = 2e-42
 Identities = 63/213 (29%), Positives = 92/213 (43%), Gaps = 54/213 (25%)

Query: 324 RWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLA-CANKCVFCWRHHTNPVGKSWQWKMD 382
            WTK  L    G  K   YGI     ++ TPS   C+  CV+CWR      G++ +   +
Sbjct: 1   HWTKKALPIVFGPVKSRRYGISLG--IQMTPSKKWCSYNCVYCWR------GRTKKGTPE 52

Query: 383 DPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGG 442
            P  IV  +I    K++   KG                                      
Sbjct: 53  RPEFIVEESILEELKLLLGYKG-------------------------------------- 74

Query: 443 VTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RISTFLVTNAQFPDKIKLLK 501
                 +E   P H  +SL GEP +YP +  L++E+ +R + +TFLVTN   PD ++ LK
Sbjct: 75  ------DEATEPDHVTISLSGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVLEELK 128

Query: 502 PVTQLYVSVDAATKDSLKAIDRPLFGDFWERFL 534
              QLYVS+DA  + + + I+RP   D WE+ L
Sbjct: 129 LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKIL 161

Length = 296

>gnl|CDD|215823 pfam00258, Flavodoxin_1, Flavodoxin

 Score = 95.2 bits (237), Expect = 3e-23
 Identities = 55/145 (37%), Positives = 78/145 (53%), Gaps = 6/145 (4%)

Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVD-PQTYEPEDLSKEALVLIVASSWEDGKP 130
           +F+ SQTG ++ LA+ L   L        +V      E E++ +E LVL V S++ DG+P
Sbjct: 1   IFYGSQTGNTEKLAEALAEGLKEAGFEVVVVSLDDVDETEEILEEDLVLFVTSTYGDGEP 60

Query: 131 PEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGA 190
           P+ AK F +W+         G   LS  ++AVFG+G   YE  F   AK L +K+ ELGA
Sbjct: 61  PDNAKPFEDWLLLFGLPLEGGD--LSGLRYAVFGLGDSGYEG-FCWAAKKLDEKLAELGA 117

Query: 191 GEVLPVVEGDVD--GGELDVVFEDW 213
             V P+ EGD D    +L+  FE W
Sbjct: 118 KRVGPLGEGDEDTQEDDLEEAFEAW 142

Length = 142

>gnl|CDD|233643 TIGR01931, cysJ, sulfite reductase [NADPH] flavoprotein, alpha-component

 Score = 87.1 bits (216), Expect = 5e-18
 Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 18/152 (11%)

Query: 76  SQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAA- 134
           SQTG ++ LAKRL   L +      L     Y+ + L KE L+L+V S+  +G+PPE A 
Sbjct: 67  SQTGNARRLAKRLAEKLEAAGFSVRLSSADDYKFKQLKKERLLLLVISTQGEGEPPEEAI 126

Query: 135 ---KFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAG 191
              KF       S    +     L N +++V G+G  SYE  F    KD  K++ ELG  
Sbjct: 127 SFHKFLH-----SKKAPK-----LENLRYSVLGLGDSSYE-FFCQTGKDFDKRLEELGGK 175

Query: 192 EVLPVVEGDVDGGELDVVFEDWSKRVVAILKS 223
            +LP V+ D+D    D    +W   V+  L  
Sbjct: 176 RLLPRVDADLD---YDANAAEWRAGVLTALNE 204

This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase. Length = 597

>gnl|CDD|182862 PRK10953, cysJ, sulfite reductase subunit alpha; Provisional

 Score = 83.6 bits (207), Expect = 6e-17
 Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 18/152 (11%)

Query: 76  SQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAA- 134
           SQTG ++ +A++L   L +  L  +LV+   Y+ + +++E L+++V S+  +G+PPE A 
Sbjct: 70  SQTGNARRVAEQLRDDLLAAKLNVNLVNAGDYKFKQIAQEKLLIVVTSTQGEGEPPEEAV 129

Query: 135 ---KFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAG 191
              KF  +   + A         L N  FAVFG+G  SYE  F    KD   K+ ELGA 
Sbjct: 130 ALHKFLFS---KKAPK-------LENTAFAVFGLGDTSYEF-FCQAGKDFDSKLAELGAE 178

Query: 192 EVLPVVEGDVDGGELDVVFEDWSKRVVAILKS 223
            +L  V+ DV   E      +W  RVV  LKS
Sbjct: 179 RLLDRVDADV---EYQAAASEWRARVVDALKS 207

Length = 600

>gnl|CDD|223446 COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]

 Score = 81.3 bits (201), Expect = 3e-16
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 9/173 (5%)

Query: 76  SQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAK 135
           SQTG ++ LA+ L   L +  L   +     Y+P+D+++E L+L V S+  +G+PP+ A 
Sbjct: 56  SQTGNAEGLAEELAKELEAAGLQVLVASLDDYKPKDIAEERLLLFVVSTQGEGEPPDNAV 115

Query: 136 FFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLP 195
            F  ++          +  L   ++AV G+G  SYE  F    KD  ++++ELGA  + P
Sbjct: 116 AFHEFL------KGKKAPKLDGLRYAVLGLGDSSYE-FFCQAGKDFDRRLQELGATRLFP 168

Query: 196 VVEGDVDGGELDVVFEDWSKRVVAILKSGGDRLENGIVNGEASIVGVESDPVY 248
            VE DV   + +     W   V+ +LKS     E        S          
Sbjct: 169 RVEADV--QDFEAAAAPWRDDVLELLKSKFPGQEAAPAQVATSPQSESPYSKP 219

Length = 587

>gnl|CDD|223788 COG0716, FldA, Flavodoxins [Energy production and conversion]

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 30/157 (19%), Positives = 61/157 (38%), Gaps = 18/157 (11%)

Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASS-WEDGK- 129
           + + S+TG ++ +A+ +   L   D     +D +    +DL +    L++ +  W  G+ 
Sbjct: 6   IVYGSRTGNTEKVAEIIAEEL-GADGFEVDIDIRPGIKDDLLESYDELLLGTPTWGAGEL 64

Query: 130 PPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELG 189
           P +   F             +  +       AVFG+G +SY   F     +    + E G
Sbjct: 65  PDDWYDFI----------EELEPIDFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKG 114

Query: 190 --AGEVLPVVEGDVDGGELDVVF---EDWSKRVVAIL 221
             A  +L  +    D    +      ++W K+++  L
Sbjct: 115 AKAVGILETLGYIFDASPNEEDEKRIKEWVKQILNEL 151

Length = 151

>gnl|CDD|233559 TIGR01753, flav_short, flavodoxin, short chain

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 17/152 (11%)

Query: 71  KLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKP 130
            + + S TG ++ +A  +   L       DL++    + EDL     VL+  S+W D   
Sbjct: 2   LIVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADADAEDLLSYDAVLLGCSTWGDEDL 61

Query: 131 P--EAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMREL 188
              +   FF     E   D     + L   K A+FG G   YE  F     D  ++++E 
Sbjct: 62  EQDDFEPFF-----EELED-----IDLGGKKVALFGSGDWGYE--FCEAVDDWEERLKEA 109

Query: 189 GAGEVLP--VVEGDVDGGELDVVFEDWSKRVV 218
           GA  +     V+GD +  +LD    +++K + 
Sbjct: 110 GATIIAEGLKVDGDPEEEDLDKC-REFAKDLA 140

Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction [Energy metabolism, Electron transport]. Length = 140

>gnl|CDD|236439 PRK09267, PRK09267, flavodoxin FldA; Validated

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 12/104 (11%)

Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP 131
           +FF S TG ++ +AK +   L  +  + D+VD      ED     L+++   +W  G+  
Sbjct: 6   IFFGSDTGNTEDIAKMIQKKLGKD--VADVVDIAKASKEDFEAYDLLILGIPTWGYGELQ 63

Query: 132 EAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVG-SKSYEKTF 174
                   W D+   +     +  S  K A+FG+G  + Y + F
Sbjct: 64  CD------W-DDFLPELE--EIDFSGKKVALFGLGDQEDYAEYF 98

Length = 169

>gnl|CDD|235854 PRK06703, PRK06703, flavodoxin; Provisional

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 74  FISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP-E 132
           + S +G ++ +A  +   L + D    L +    + E+L     +++ + +W DG  P E
Sbjct: 8   YASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAEELLAYDGIILGSYTWGDGDLPYE 67

Query: 133 AAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEK 172
           A  F     ++      + ++ LS  K AVFG G  +Y  
Sbjct: 68  AEDFH----ED------LENIDLSGKKVAVFGSGDTAYPL 97

Length = 151

>gnl|CDD|181608 PRK09004, PRK09004, FMN-binding protein MioC; Provisional

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)

Query: 110 EDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKS 169
           +DLS   L LIV S+   G  P+  + F   + E   D       LS  +FA  G+GS  
Sbjct: 42  DDLSASGLWLIVTSTHGAGDLPDNLQPFFEELQEQKPD-------LSQVRFAAIGIGSSE 94

Query: 170 YEKTFNMVAKDLSKKMRELGAGEVLPVVEGDV 201
           Y+ TF      L + ++  GA ++   ++ DV
Sbjct: 95  YD-TFCGAIDKLEQLLKAKGAKQIGETLKIDV 125

Length = 146

>gnl|CDD|233558 TIGR01752, flav_long, flavodoxin, long chain

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 12/104 (11%)

Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP 131
           +F+ + TG ++ +A+++   L  +D   D+ +      EDL+    +++   +W  G+  
Sbjct: 4   IFYGTDTGNTEGIAEKIQKELGEDD--VDVFNIAKASKEDLNAYDKLILGTPTWGVGELQ 61

Query: 132 EAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVG-SKSYEKTF 174
           E  + F+  ++E            +    A+FG+G  + Y +TF
Sbjct: 62  EDWEDFLPTLEELD---------FTGKTVALFGLGDQEGYSETF 96

Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli [Energy metabolism, Electron transport]. Length = 167

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	534
KOG1160	601	consensus Fe-S oxidoreductase [Energy production a	100.0
PRK13762	322	tRNA-modifying enzyme; Provisional	100.0
COG0731	296	Fe-S oxidoreductases [Energy production and conver	100.0
PRK09004	146	FMN-binding protein MioC; Provisional	100.0
PRK05723	151	flavodoxin; Provisional	100.0
PRK08105	149	flavodoxin; Provisional	99.98
PRK10953	600	cysJ sulfite reductase subunit alpha; Provisional	99.96
TIGR01931	597	cysJ sulfite reductase [NADPH] flavoprotein, alpha	99.96
KOG1159	574	consensus NADP-dependent flavoprotein reductase [E	99.95
PF00258	143	Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This	99.95
PRK07308	146	flavodoxin; Validated	99.93
PRK06703	151	flavodoxin; Provisional	99.91
PRK09271	160	flavodoxin; Provisional	99.87
PRK12359	172	flavodoxin FldB; Provisional	99.87
TIGR01753	140	flav_short flavodoxin, short chain. Flavodoxins ar	99.86
PRK06756	148	flavodoxin; Provisional	99.86
TIGR01752	167	flav_long flavodoxin, long chain. Flavodoxins are	99.85
TIGR01754	140	flav_RNR ribonucleotide reductase-associated flavo	99.84
COG0369	587	CysJ Sulfite reductase, alpha subunit (flavoprotei	99.81
COG0716	151	FldA Flavodoxins [Energy production and conversion	99.79
PRK09267	169	flavodoxin FldA; Validated	99.79
KOG1158	645	consensus NADP/FAD dependent oxidoreductase [Energ	99.73
PRK02551	154	flavoprotein NrdI; Provisional	99.72
PRK11921	394	metallo-beta-lactamase/flavodoxin domain-containin	99.65
TIGR00333	125	nrdI ribonucleoside-diphosphate reductase 2, opero	99.62
PRK05569	141	flavodoxin; Provisional	99.61
PRK05568	142	flavodoxin; Provisional	99.59
PRK05452	479	anaerobic nitric oxide reductase flavorubredoxin;	99.57
COG2100	414	Predicted Fe-S oxidoreductase [General function pr	99.53
PRK03600	134	nrdI ribonucleotide reductase stimulatory protein;	99.53
TIGR02109	358	PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E.	99.46
PRK05301	378	pyrroloquinoline quinone biosynthesis protein PqqE	99.43
PRK13361	329	molybdenum cofactor biosynthesis protein A; Provis	99.42
TIGR02668	302	moaA_archaeal probable molybdenum cofactor biosynt	99.42
PLN02951	373	Molybderin biosynthesis protein CNX2	99.4
TIGR02495	191	NrdG2 anaerobic ribonucleoside-triphosphate reduct	99.38
TIGR03470	318	HpnH hopanoid biosynthesis associated radical SAM	99.37
PRK06242	150	flavodoxin; Provisional	99.36
TIGR02493	235	PFLA pyruvate formate-lyase 1-activating enzyme. A	99.35
PRK00164	331	moaA molybdenum cofactor biosynthesis protein A; R	99.35
TIGR01290	442	nifB nitrogenase cofactor biosynthesis protein Nif	99.31
PRK11145	246	pflA pyruvate formate lyase-activating enzyme 1; P	99.29
TIGR02666	334	moaA molybdenum cofactor biosynthesis protein A, b	99.29
TIGR03365	238	Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosyn	99.24
PF04055	166	Radical_SAM: Radical SAM superfamily; InterPro: IP	99.23
TIGR01755	197	flav_wrbA NAD(P)H:quinone oxidoreductase, type IV.	99.22
PRK14470	336	ribosomal RNA large subunit methyltransferase N; P	99.19
PRK11104	177	hemG protoporphyrinogen oxidase; Provisional	99.19
PF07972	122	Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro:	99.16
PRK03767	200	NAD(P)H:quinone oxidoreductase; Provisional	99.14
PRK13758	370	anaerobic sulfatase-maturase; Provisional	99.13
PF13353	139	Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A	99.11
COG2896	322	MoaA Molybdenum cofactor biosynthesis enzyme [Coen	99.08
PF13394	119	Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B	99.06
COG1780	141	NrdI Protein involved in ribonucleotide reduction	99.06
PRK14469	343	ribosomal RNA large subunit methyltransferase N; P	99.05
COG0426	388	FpaA Uncharacterized flavoproteins [Energy product	99.03
cd01335	204	Radical_SAM Radical SAM superfamily. Enzymes of th	99.0
TIGR03278	404	methan_mark_10 putative methanogenesis marker prot	99.0
PRK14456	368	ribosomal RNA large subunit methyltransferase N; P	98.99
PRK14460	354	ribosomal RNA large subunit methyltransferase N; P	98.97
PRK14468	343	ribosomal RNA large subunit methyltransferase N; P	98.97
PRK13745	412	anaerobic sulfatase-maturase; Provisional	98.96
PRK07116	160	flavodoxin; Provisional	98.96
PF12641	160	Flavodoxin_3: Flavodoxin domain	98.9
PRK14463	349	ribosomal RNA large subunit methyltransferase N; P	98.88
PRK14455	356	ribosomal RNA large subunit methyltransferase N; P	98.88
TIGR02494	295	PFLE_PFLC glycyl-radical enzyme activating protein	98.87
PRK14457	345	ribosomal RNA large subunit methyltransferase N; P	98.86
TIGR00048	355	radical SAM enzyme, Cfr family. A Staphylococcus s	98.86
COG0535	347	Predicted Fe-S oxidoreductases [General function p	98.85
PF12724	143	Flavodoxin_5: Flavodoxin domain	98.85
smart00729	216	Elp3 Elongator protein 3, MiaB family, Radical SAM	98.84
PRK14467	348	ribosomal RNA large subunit methyltransferase N; P	98.84
COG1180	260	PflA Pyruvate-formate lyase-activating enzyme [Pos	98.83
PRK14466	345	ribosomal RNA large subunit methyltransferase N; P	98.74
COG5014	228	Predicted Fe-S oxidoreductase [General function pr	98.71
PRK14459	373	ribosomal RNA large subunit methyltransferase N; P	98.68
PRK14453	347	chloramphenicol/florfenicol resistance protein; Pr	98.63
PRK15108	345	biotin synthase; Provisional	98.62
COG0641	378	AslB Arylsulfatase regulator (Fe-S oxidoreductase)	98.59
PRK14465	342	ribosomal RNA large subunit methyltransferase N; P	98.59
PRK14454	342	ribosomal RNA large subunit methyltransferase N; P	98.58
PRK14462	356	ribosomal RNA large subunit methyltransferase N; P	98.56
PF03358	152	FMN_red: NADPH-dependent FMN reductase; InterPro:	98.54
TIGR02491	154	NrdG anaerobic ribonucleoside-triphosphate reducta	98.47
PRK10076	213	pyruvate formate lyase II activase; Provisional	98.46
COG4635	175	HemG Flavodoxin [Energy production and conversion	98.41
PRK11194	372	ribosomal RNA large subunit methyltransferase N; P	98.38
PRK14464	344	ribosomal RNA large subunit methyltransferase N; P	98.32
PF12682	156	Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.	98.31
COG0602	212	NrdG Organic radical activating enzymes [Posttrans	98.3
TIGR00433	296	bioB biotin synthetase. Catalyzes the last step of	98.29
TIGR03567	171	FMN_reduc_SsuE FMN reductase, SsuE family. Members	98.25
PLN02389	379	biotin synthase	98.16
TIGR02826	147	RNR_activ_nrdG3 anaerobic ribonucleoside-triphosph	98.16
PRK10569	191	NAD(P)H-dependent FMN reductase; Provisional	98.14
PRK07094	323	biotin synthase; Provisional	98.11
TIGR03566	174	FMN_reduc_MsuE FMN reductase, MsuE subfamily. Memb	98.04
PRK06934	221	flavodoxin; Provisional	98.01
TIGR00238	331	KamA family protein. Note that the E. coli homolog	98.0
PRK09240	371	thiH thiamine biosynthesis protein ThiH; Reviewed	97.94
TIGR02351	366	thiH thiazole biosynthesis protein ThiH. Members t	97.91
PRK06256	336	biotin synthase; Validated	97.91
TIGR03822	321	AblA_like_2 lysine-2,3-aminomutase-related protein	97.87
PRK05660	378	HemN family oxidoreductase; Provisional	97.85
PRK00170	201	azoreductase; Reviewed	97.85
PRK01355	199	azoreductase; Reviewed	97.78
PRK09739	199	hypothetical protein; Provisional	97.74
TIGR03821	321	AblA_like_1 lysine-2,3-aminomutase-related protein	97.71
PRK09249	453	coproporphyrinogen III oxidase; Provisional	97.67
TIGR00539	360	hemN_rel putative oxygen-independent coproporphyri	97.64
TIGR03820	417	lys_2_3_AblA lysine-2,3-aminomutase. This model de	97.6
TIGR00538	455	hemN oxygen-independent coproporphyrinogen III oxi	97.6
PF02525	199	Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR0	97.6
PRK14461	371	ribosomal RNA large subunit methyltransferase N; P	97.55
PRK11121	154	nrdG anaerobic ribonucleotide reductase-activating	97.53
COG1964	475	Predicted Fe-S oxidoreductases [General function p	97.53
PRK13347	453	coproporphyrinogen III oxidase; Provisional	97.51
PRK08446	350	coproporphyrinogen III oxidase; Provisional	97.37
PRK08508	279	biotin synthase; Provisional	97.35
TIGR03471	472	HpnJ hopanoid biosynthesis associated radical SAM	97.3
PRK08208	430	coproporphyrinogen III oxidase; Validated	97.27
TIGR02690	219	resist_ArsH arsenical resistance protein ArsH. Mem	97.26
PRK05628	375	coproporphyrinogen III oxidase; Validated	97.23
PRK14862	440	rimO ribosomal protein S12 methylthiotransferase;	97.22
PRK13556	208	azoreductase; Provisional	97.15
TIGR03551	343	F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav	97.11
PRK08599	377	coproporphyrinogen III oxidase; Provisional	97.11
COG1313	335	PflX Uncharacterized Fe-S protein PflX, homolog of	97.09
PRK05799	374	coproporphyrinogen III oxidase; Provisional	97.09
TIGR03699	340	mena_SCO4550 menaquinone biosynthesis protein, SCO	97.07
PRK14338	459	(dimethylallyl)adenosine tRNA methylthiotransferas	97.07
COG0655	207	WrbA Multimeric flavodoxin WrbA [General function	97.07
PRK06267	350	hypothetical protein; Provisional	96.94
PRK08207	488	coproporphyrinogen III oxidase; Provisional	96.93
COG0820	349	Predicted Fe-S-cluster redox enzyme [General funct	96.9
PRK14334	440	(dimethylallyl)adenosine tRNA methylthiotransferas	96.9
PRK06294	370	coproporphyrinogen III oxidase; Provisional	96.87
TIGR03700	351	mena_SCO4494 putative menaquinone biosynthesis pro	96.81
TIGR02026	497	BchE magnesium-protoporphyrin IX monomethyl ester	96.74
TIGR01125	430	MiaB-like tRNA modifying enzyme YliG, TIGR01125. T	96.62
KOG2876	323	consensus Molybdenum cofactor biosynthesis pathway	96.52
TIGR00089	429	RNA modification enzyme, MiaB family. This subfami	96.5
TIGR00423	309	radical SAM domain protein, CofH subfamily. This p	96.46
PRK05904	353	coproporphyrinogen III oxidase; Provisional	96.44
PRK06582	390	coproporphyrinogen III oxidase; Provisional	96.35
PRK09613	469	thiH thiamine biosynthesis protein ThiH; Reviewed	96.3
PRK08898	394	coproporphyrinogen III oxidase; Provisional	96.25
PRK13555	208	azoreductase; Provisional	96.12
PRK09057	380	coproporphyrinogen III oxidase; Provisional	96.06
PRK06245	336	cofG FO synthase subunit 1; Reviewed	96.01
PRK14327	509	(dimethylallyl)adenosine tRNA methylthiotransferas	95.99
PRK08444	353	hypothetical protein; Provisional	95.97
PRK14331	437	(dimethylallyl)adenosine tRNA methylthiotransferas	95.85
PRK07379	400	coproporphyrinogen III oxidase; Provisional	95.67
PRK04930	184	glutathione-regulated potassium-efflux system anci	95.63
PRK08445	348	hypothetical protein; Provisional	95.59
PRK14340	445	(dimethylallyl)adenosine tRNA methylthiotransferas	95.58
PRK14337	446	(dimethylallyl)adenosine tRNA methylthiotransferas	95.42
KOG1160	601	consensus Fe-S oxidoreductase [Energy production a	95.38
PRK09058	449	coproporphyrinogen III oxidase; Provisional	95.24
PRK14328	439	(dimethylallyl)adenosine tRNA methylthiotransferas	95.24
COG1060	370	ThiH Thiamine biosynthesis enzyme ThiH and related	95.2
TIGR01574	438	miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3	95.17
PRK08629	433	coproporphyrinogen III oxidase; Provisional	95.13
PRK14325	444	(dimethylallyl)adenosine tRNA methylthiotransferas	95.09
COG0502	335	BioB Biotin synthase and related enzymes [Coenzyme	95.04
PRK14336	418	(dimethylallyl)adenosine tRNA methylthiotransferas	95.03
PRK14326	502	(dimethylallyl)adenosine tRNA methylthiotransferas	94.99
PRK14329	467	(dimethylallyl)adenosine tRNA methylthiotransferas	94.97
TIGR03550	322	F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav	94.85
COG2108	353	Uncharacterized conserved protein related to pyruv	94.8
TIGR01579	414	MiaB-like-C MiaB-like tRNA modifying enzyme. This	94.56
COG0621	437	MiaB 2-methylthioadenine synthetase [Translation,	94.55
PRK00871	176	glutathione-regulated potassium-efflux system anci	94.44
PRK14332	449	(dimethylallyl)adenosine tRNA methylthiotransferas	94.38
TIGR00510	302	lipA lipoate synthase. The family shows strong seq	94.36
PLN02428	349	lipoic acid synthase	94.35
PRK14339	420	(dimethylallyl)adenosine tRNA methylthiotransferas	94.28
TIGR01578	420	MiaB-like-B MiaB-like tRNA modifying enzyme, archa	94.08
PRK14330	434	(dimethylallyl)adenosine tRNA methylthiotransferas	94.06
COG0431	184	Predicted flavoprotein [General function predictio	94.03
PRK05481	289	lipoyl synthase; Provisional	93.9
TIGR01212	302	radical SAM protein, TIGR01212 family. This unchar	93.81
PRK07360	371	FO synthase subunit 2; Reviewed	93.04
PRK12928	290	lipoyl synthase; Provisional	92.95
COG1032	490	Fe-S oxidoreductase [Energy production and convers	92.93
PRK05926	370	hypothetical protein; Provisional	92.64
PRK14333	448	(dimethylallyl)adenosine tRNA methylthiotransferas	92.51
PRK00955	620	hypothetical protein; Provisional	92.49
KOG3135	203	consensus 1,4-benzoquinone reductase-like; Trp rep	92.26
TIGR01211	522	ELP3 histone acetyltransferase, ELP3 family. The S	92.24
TIGR01210	313	conserved hypothetical protein TIGR01210. This fam	91.63
COG1625	414	Fe-S oxidoreductase, related to NifB/MoaA family [	91.23
PRK14335	455	(dimethylallyl)adenosine tRNA methylthiotransferas	90.99
COG1533	297	SplB DNA repair photolyase [DNA replication, recom	90.06
COG2516	339	Biotin synthase-related enzyme [General function p	90.04
COG0635	416	HemN Coproporphyrinogen III oxidase and related Fe	90.0
COG2249	189	MdaB Putative NADPH-quinone reductase (modulator o	89.0
TIGR02253	221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	87.34
PRK05927	350	hypothetical protein; Provisional	86.15
PRK06769	173	hypothetical protein; Validated	85.76
TIGR02247	211	HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li	85.66
PRK09234	843	fbiC FO synthase; Reviewed	85.3
cd07371	268	2A5CPDO_AB The alpha and beta subunits of the Clas	84.75
TIGR01664	166	DNA-3'-Pase DNA 3'-phosphatase. The central phosph	83.85
TIGR01662	132	HAD-SF-IIIA HAD-superfamily hydrolase, subfamily I	83.79
TIGR02252	203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	82.3
TIGR01668	170	YqeG_hyp_ppase HAD superfamily (subfamily IIIA) ph	82.26
PRK14988	224	GMP/IMP nucleotidase; Provisional	82.08
TIGR01990	185	bPGM beta-phosphoglucomutase. The enzyme from L. l	81.62
PTZ00413	398	lipoate synthase; Provisional	81.02
TIGR01428	198	HAD_type_II 2-haloalkanoic acid dehalogenase, type	80.88
KOG0560	638	consensus Sulfite reductase (ferredoxin) [Inorgani	80.76

>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]

Probab=100.00  E-value=4.5e-116  Score=909.39  Aligned_cols=427  Identities=52%  Similarity=0.844  Sum_probs=389.9

Q ss_pred             cchhhhhhhhhhHHHHHhhchhhhhhcCCCCCCCCCCCCCCCcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCC
Q 038595           27 ESRNCSRLQEATTFYFAYKSRRLNKFLRHSDYRKKPENPNPNKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQT  106 (534)
Q Consensus        27 ~~~~~~~~l~a~~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d  106 (534)
                      +-++.+..+++++.+++.|..+.+-.++.+-.+.+....++.  .|||+|+||||+++|+.+++.|.+....++++|++ 
T Consensus         8 ~v~i~f~~~s~s~~~~~~k~~~~r~~k~~s~~k~~~~~~~~~--~vfy~s~~GtA~~~A~~~~e~~~sld~~~~llnl~-   84 (601)
T KOG1160|consen    8 PVTIDFTKLSSSTPKCFSKNSSSRVLKKLSVSKIGPDGLIKS--KVFYSSLTGTAKKAAKSVHEKLKSLDELPKLLNLD-   84 (601)
T ss_pred             eEEEEeeecccCCcceeehhhhhhhhhhcccCccCcccCccc--eEEEEeccchHHHHHHHHHHHHHhcccchhhcCCC-
Confidence            445556788999999999999988888777766666666664  99999999999999999999999988889999999 


Q ss_pred             CCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHH
Q 038595          107 YEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR  186 (534)
Q Consensus       107 ~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~  186 (534)
                      +++.|++ +++++|++.|+.+|.||  +++|++||+++++|||+++.+|+|++|||||+||++|.++||++|+++|+|+.
T Consensus        85 y~~~d~p-en~~~~lv~~~~~~~~~--~d~~~~~L~Esa~DFRv~~~~L~~~~yaVfGlG~~~~~~~f~~~ak~~d~wi~  161 (601)
T KOG1160|consen   85 YSDFDVP-ENALYFLVLPSYDIDPP--LDYFLQWLEESANDFRVGSFPLRGLVYAVFGLGDSEYWPKFCYQAKRADKWIS  161 (601)
T ss_pred             CCccCCC-cceEEEEEecccCCCCc--HHHHHHHHHhhhhccccCCccccCceEEEEeccchhhhhHHHHHHHhHHHHHH
Confidence            8888888 66666666666668888  78999999999999999999999999999999999988899999999999999


Q ss_pred             HcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhcCCCccccccCCCcccCCCCCCCCCCCCCCccccccccccccc
Q 038595          187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGGDRLENGIVNGEASIVGVESDPVYHEYDDDEEEEDVVESEMV  266 (534)
Q Consensus       187 kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (534)
                      +|||+|++|+|++|.+++.    +++|+..++..|+...+.+.+                 ..         ++.+++++
T Consensus       162 ~LG~~r~~p~G~~~~~~~~----id~W~~~~~~~Lk~g~~~~~~-----------------~~---------ds~~~~i~  211 (601)
T KOG1160|consen  162 RLGGRRIFPLGEVDMDSAK----IDEWTSLVAETLKDGEPIKYE-----------------NA---------DSGSDEIV  211 (601)
T ss_pred             hhcCceeeecCcccccccc----HHHHHHHHHHHHcCCCeeeec-----------------cc---------ccccccee
Confidence            9999999999999998644    559999999999887764421                 00         11456899


Q ss_pred             ccccccCCCCCCCccccccccccccccccccccHHHHHHhhhcCceEEecccceeeehhhhhhhcCCCccccceeeeccC
Q 038595          267 DLEDIAGKGPSRRSVNVAETNGKVKDSKRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIES  346 (534)
Q Consensus       267 d~ed~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gy~~~~~h~~vk~c~w~~~~~~~~~~cyk~~fygi~s  346 (534)
                      ||||||+++...+          ...+.|+||||++|++|+||||++|||||||||||||||+|||||+||||+||||.|
T Consensus       212 DvEDig~~~~~~k----------~~~~~keMvt~~~~~aLTKQGYkviGSHSGVKiCRWTKs~lRGrG~CYK~sfygi~s  281 (601)
T KOG1160|consen  212 DVEDIGGKGGNGK----------GADEDKEMVTPDSYKALTKQGYKVIGSHSGVKICRWTKSELRGRGGCYKHSFYGICS  281 (601)
T ss_pred             eHHHhcccccccc----------ccchhhhhcCHHHHHHHHhccceEeeccCCeeeeeechHHhccCCceeeeeecceeh
Confidence            9999998655433          234459999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccc
Q 038595          347 HRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSA  426 (534)
Q Consensus       347 ~~c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~  426 (534)
                      ||||++||+++|+|||+|||||+||||++.|+|+||.|+.|+.+++++|++||+||+|+||                   
T Consensus       282 ~rcmeltPslacanKcvfcWrh~tnpv~~~wrwk~d~pevil~gal~lhy~mikqmkgvpg-------------------  342 (601)
T KOG1160|consen  282 HRCMELTPSLACANKCVFCWRHDTNPVGEIWRWKMDAPEVILKGALYLHYNMIKQMKGVPG-------------------  342 (601)
T ss_pred             hccCCCCCCcccCCCCceeeeccCCcccceEEEecCCchhhhHHHHHHHHHHHHHhhcCCC-------------------
Confidence            9999999999999999999999999999999999999999999999999999999999999                   


Q ss_pred             cccCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCCCceE
Q 038595          427 IDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQL  506 (534)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~v~ql  506 (534)
                                      |.+||++||++++|||+|++|||++||+|+++++.||.+.|+.||+||+++|+.+..+.+|+|+
T Consensus       343 ----------------vk~Er~~ea~evrhcalslVgepi~yp~in~f~k~lH~k~issflvtnaq~pe~~rnvk~vtql  406 (601)
T KOG1160|consen  343 ----------------VKAERFEEAEEVRHCALSLVGEPIMYPEINPFAKLLHQKLISSFLVTNAQFPEDIRNVKPVTQL  406 (601)
T ss_pred             ----------------cCHHHHHhhhhhhhheeeeecccccchhhhHHHHHHHhccchHHhcccccChHHHhchhhhhee
Confidence                            9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCHHHHHhhcCCCCCchhhhcC
Q 038595          507 YVSVDAATKDSLKAIDRPLFGDFWERFL  534 (534)
Q Consensus       507 yvSlDA~~~e~y~~I~rP~~~~~w~~~~  534 (534)
                      |+|+||+++.+.++|+||+++||||||+
T Consensus       407 yvsvda~Tktslk~idrPlfkdFwEr~~  434 (601)
T KOG1160|consen  407 YVSVDASTKTSLKKIDRPLFKDFWERFL  434 (601)
T ss_pred             EEEEeecchhhhcCCCCchHHHHHHHHH
Confidence            9999999999999999999999999984

>PRK13762 tRNA-modifying enzyme; Provisional

Probab=100.00  E-value=7.7e-68  Score=544.44  Aligned_cols=206  Identities=47%  Similarity=0.882  Sum_probs=199.1

Q ss_pred             ccccccHHHHHHhhhcCceEEecccceeeehhhhhhhcCCCccccceeeeccCCeeeeeccccc-ccccccccccCCCCC
Q 038595          294 KRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLA-CANKCVFCWRHHTNP  372 (534)
Q Consensus       294 ~~~~~~~~~~~~l~~~gy~~~~~h~~vk~c~w~~~~~~~~~~cyk~~fygi~s~~c~~~~p~~~-C~~~C~~C~r~~~~~  372 (534)
                      .++|+++.+++.|+||||+|||+|||||+|||||++|||+|+||||+||||+|||||||||+++ ||++|+||||+++++
T Consensus         3 ~~~~~~~~~~~~~~~~~y~~~~~h~~vk~c~w~~~~~~~~~~cyk~~fygi~s~~c~q~~P~~~~C~~rC~fC~r~~~~~   82 (322)
T PRK13762          3 LRIMIPSEIAKILRKQGYHIVGRHSAVKLCHWTKKALKGGRSCYKSKFYGIESHRCVQMTPVVAWCNQRCLFCWRPLEED   82 (322)
T ss_pred             cccccCHHHHHHHHhCCCEEeccccceeechhhHHHhcCCCcccccccccccchheeccCchhHHHhccCceeeccCCCC
Confidence            4789999999999999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             CCC-cccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCCCCCcccccccHHHhhhc
Q 038595          373 VGK-SWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEG  451 (534)
Q Consensus       373 ~~~-~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea  451 (534)
                      ++. .|.|.+++|++|++++++.|+++|++|+|+|+                                   |++|||+||
T Consensus        83 ~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~-----------------------------------v~~~~~~ea  127 (322)
T PRK13762         83 VGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPK-----------------------------------VDREKFEEA  127 (322)
T ss_pred             cccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCC-----------------------------------CCHHHhhhc
Confidence            887 69999999999999999999999999999999                                   999999999


Q ss_pred             cCCceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCC-CceEEEEeeCCCHHHHHhhcCCCCCchh
Q 038595          452 LTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKP-VTQLYVSVDAATKDSLKAIDRPLFGDFW  530 (534)
Q Consensus       452 ~~~~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP~~~~~w  530 (534)
                      ++|+|++||++|||||||+|.++++++|++|++++|+|||++|+.+++|.. +++++||||++++++|++|+||+.++.|
T Consensus       128 ~~~~~v~iSl~GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~~e~l~~L~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~  207 (322)
T PRK13762        128 MEPKHVAISLSGEPTLYPYLPELIEEFHKRGFTTFLVTNGTRPDVLEKLEEEPTQLYVSLDAPDEETYKKINRPVIPDAW  207 (322)
T ss_pred             cCCCEEEEeCCccccchhhHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHhcCCEEEEEccCCCHHHHHHHhCCCCCCcH
Confidence            999999999999999999999999999999999999999999999999954 7999999999999999999999878899


Q ss_pred             hhcC
Q 038595          531 ERFL  534 (534)
Q Consensus       531 ~~~~  534 (534)
                      ++++
T Consensus       208 ~~vl  211 (322)
T PRK13762        208 ERIL  211 (322)
T ss_pred             HHHH
Confidence            9874

>COG0731 Fe-S oxidoreductases [Energy production and conversion]

Probab=100.00  E-value=5.2e-44  Score=362.73  Aligned_cols=159  Identities=40%  Similarity=0.686  Sum_probs=147.0

Q ss_pred             hhhhhhhcCCCccccceeeeccCCeeeeecccc-cccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcc
Q 038595          324 RWTKSQLRGRGGCYKHSFYGIESHRCMEATPSL-ACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQM  402 (534)
Q Consensus       324 ~w~~~~~~~~~~cyk~~fygi~s~~c~~~~p~~-~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~  402 (534)
                      +|||+++++.++|||++||||.+|  +|+||++ .|+++||||||+. .+....|     +|+.|+.+.|..|.+++.++
T Consensus         1 ~w~~~~~~~~~gp~ksrryG~slg--i~~tP~~~~Cs~~CvyC~~G~-~~~~~~~-----~~efi~~~~I~~~~~~~~~~   72 (296)
T COG0731           1 HWTKKALPIVFGPVKSRRYGISLG--IQMTPSKKWCSYNCVYCWRGR-TKKGTPE-----RPEFIVEESILEELKLLLGY   72 (296)
T ss_pred             CcchhhccCCCCCccccccccccC--CccccchhhhcCCCeEEeccc-CCCCCCC-----CCceecHHHHHHHHHHHhcc
Confidence            699999999999999999999999  9999999 7999999999943 3333332     89999999999999999988


Q ss_pred             cCCCCCcceeeeeccccccccccccccCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhcC
Q 038595          403 KGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRR  482 (534)
Q Consensus       403 ~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~g  482 (534)
                      +|  +                                          ||+.|||+|||++|||||||+|+|+|+.+|++|
T Consensus        73 ~g--~------------------------------------------ea~~pd~vtis~~GEPTLy~~L~elI~~~k~~g  108 (296)
T COG0731          73 KG--D------------------------------------------EATEPDHVTISLSGEPTLYPNLGELIEEIKKRG  108 (296)
T ss_pred             cc--c------------------------------------------ccCCCCEEEEeCCCCcccccCHHHHHHHHHhcC
Confidence            75  1                                          688999999999999999999999999999999


Q ss_pred             -CcEEEEcCCCCHHHHhhcCCCceEEEEeeCCCHHHHHhhcCCCCCchhhhcC
Q 038595          483 -ISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFL  534 (534)
Q Consensus       483 -i~~~LvTNGtlpe~l~~L~~v~qlyvSlDA~~~e~y~~I~rP~~~~~w~~~~  534 (534)
                       ++|||||||++|+++++|..+||||+||||+|+++|++|+||+.+++||+++
T Consensus       109 ~~~tflvTNgslpdv~~~L~~~dql~~sLdA~~~~~~~~InRP~~~~~~e~il  161 (296)
T COG0731         109 KKTTFLVTNGSLPDVLEELKLPDQLYVSLDAPDEKTFRRINRPHKKDSWEKIL  161 (296)
T ss_pred             CceEEEEeCCChHHHHHHhccCCEEEEEeccCCHHHHHHhcCCCCcchHHHHH
Confidence             7999999999999999998779999999999999999999999999999975

>PRK09004 FMN-binding protein MioC; Provisional

Probab=100.00  E-value=3.6e-32  Score=250.98  Aligned_cols=143  Identities=26%  Similarity=0.325  Sum_probs=131.2

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      +|.|+|+|+||||+.+|++|++.+.+.|+.++++++.+  ++++.+.+++||++||||+|+||+|+..|+++|++..   
T Consensus         3 ~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~--~~~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~---   77 (146)
T PRK09004          3 DITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPL--LDDLSASGLWLIVTSTHGAGDLPDNLQPFFEELQEQK---   77 (146)
T ss_pred             eEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCC--HHHhccCCeEEEEECCCCCCCCChhHHHHHHHHHhcC---
Confidence            59999999999999999999999999999999988765  5778889999999999999999999999999998753   


Q ss_pred             cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHHHHH
Q 038595          149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVVAIL  221 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~~~L  221 (534)
                          ..|+|++|||||+||+.| ++||.+++.++++|+++||+++.|++++|...+ .++..|++|.+++++.|
T Consensus        78 ----~~l~g~~~aVfGlGds~Y-~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~~~~~~  146 (146)
T PRK09004         78 ----PDLSQVRFAAIGIGSSEY-DTFCGAIDKLEQLLKAKGAKQIGETLKIDVLQHPIPEDPAEEWLKSWINLL  146 (146)
T ss_pred             ----CCCCCCEEEEEeecCCCH-HHHhHHHHHHHHHHHHcCCeEeeccEEEeCCCCCCchhHHHHHHHHHHHhC
Confidence                358999999999999999 599999999999999999999999999999854 46889999999988754

>PRK05723 flavodoxin; Provisional

Probab=100.00  E-value=3.7e-32  Score=252.86  Aligned_cols=146  Identities=23%  Similarity=0.223  Sum_probs=128.7

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCC--CeEEEEeccCCCCCCchHHHHHHHHHHhhcC
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKE--ALVLIVASSWEDGKPPEAAKFFMNWIDESAN  146 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~--~lvIfv~STYg~G~pPdna~~Fle~L~e~~~  146 (534)
                      ++.|+|||+|||||.+|++|++.|.+.|+.+.++..  .+..++...  +.+||++||||+|+||+|+..|+++|++...
T Consensus         2 ~i~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~~~~--~~~~~~~~~~~~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~~   79 (151)
T PRK05723          2 KVAILSGSVYGTAEEVARHAESLLKAAGFEAWHNPR--ASLQDLQAFAPEALLAVTSTTGMGELPDNLMPLYSAIRDQLP   79 (151)
T ss_pred             eEEEEEEcCchHHHHHHHHHHHHHHHCCCceeecCc--CCHhHHHhCCCCeEEEEECCCCCCCCchhHHHHHHHHHhcCc
Confidence            589999999999999999999999999998876543  334444433  7899999999999999999999999987521


Q ss_pred             cccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCC-CCcHHHHHHHHHHHHHHHH
Q 038595          147 DFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDG-GELDVVFEDWSKRVVAILK  222 (534)
Q Consensus       147 DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~-g~~e~~f~eW~~~L~~~L~  222 (534)
                            ..|++++||||||||+.|+++||.+++.++++|+++||+|+++++++|... ++++..|.+|.+++++.|.
T Consensus        80 ------~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~~D~~~~~~~e~~~~~W~~~~~~~l~  150 (151)
T PRK05723         80 ------AAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLRLDASETVTPETDAEPWLAEFAAALK  150 (151)
T ss_pred             ------cCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEEeecCCCCChHHHHHHHHHHHHHHhc
Confidence                  269999999999999999779999999999999999999999999999985 3689999999999998874

>PRK08105 flavodoxin; Provisional

Probab=99.98  E-value=1e-31  Score=248.79  Aligned_cols=145  Identities=22%  Similarity=0.300  Sum_probs=130.6

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      ++.|+|||+|||||.+|++|++.|.+.|+.+.++++++++...+.+.+.+||++||||+|+||+|+..|+++|++.    
T Consensus         3 ~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~----   78 (149)
T PRK08105          3 KVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELSDWQPYQDELVLVVTSTTGQGDLPDSIVPLFQALKDT----   78 (149)
T ss_pred             eEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCCchhcccCCeEEEEECCCCCCCCChhHHHHHHHHHhc----
Confidence            5999999999999999999999999999999999998876444455789999999999999999999999999864    


Q ss_pred             cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHHHHH
Q 038595          149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVVAIL  221 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~~~L  221 (534)
                         ...|+|++||||||||+.| ++||.+++.++++|+++||++++|++++|...+ +++..|++|.+++...|
T Consensus        79 ---~~~l~~~~~avfGlGds~Y-~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~~~~~~  148 (149)
T PRK08105         79 ---AGYQPNLRYGVIALGDSSY-DNFCGAGKQFDALLQEQGAKRVGERLEIDACETPEPEVEANPWVEQWGTLL  148 (149)
T ss_pred             ---CcccCCCEEEEEeeecCCH-HHHHHHHHHHHHHHHHCCCeEeeccEeeeCCCCCChHHHHHHHHHHHHHHh
Confidence               2368999999999999999 699999999999999999999999999998754 57899999999955443

>PRK10953 cysJ sulfite reductase subunit alpha; Provisional

Probab=99.96  E-value=1.3e-28  Score=272.15  Aligned_cols=196  Identities=27%  Similarity=0.374  Sum_probs=155.3

Q ss_pred             ccccccccch--hhhhhhhhhHHHHHhhchhhhhhcCCC-CCCCCCCCCCCCcEEEEEECccchHHHHHHHHHHHHhhCC
Q 038595           20 LTFGKTVESR--NCSRLQEATTFYFAYKSRRLNKFLRHS-DYRKKPENPNPNKGKLFFISQTGTSKTLAKRLHALLTSND   96 (534)
Q Consensus        20 ~~~~~~~~~~--~~~~~l~a~~~y~~~k~~~~~~~~~~~-~~~~~~~~~~~~kVlI~YgSqTGtTE~lAe~La~~L~~~G   96 (534)
                      +||...--..  .+++-|.+....|+-++......+... .+..+.......+++|+|||+|||||.+|++|++.+.+.|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~w~~g~l~~~~~~~~~~~~~~~~~~~~~~~v~IlygSqTGnae~lA~~la~~l~~~g   90 (600)
T PRK10953         11 LPLNPEQLARLQAATTDLSPTQLAWVSGYFWGVLNQQPGAVAATPAPAAEMPGITLISASQTGNARRVAEQLRDDLLAAK   90 (600)
T ss_pred             CCCCHHHHHHHHHHhhccCHHHHHHHHHHHhhhhccCCccccccccccCCCCeEEEEEEcCchHHHHHHHHHHHHHHhCC
Confidence            3565542222  455566666666666654322111000 0100011122346999999999999999999999999999


Q ss_pred             CceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHH
Q 038595           97 LLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNM  176 (534)
Q Consensus        97 l~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~  176 (534)
                      +.+++++++++++.+|..++.+|||+||||+|+||+|+..|+++|....      ...|.|++||||||||++| ++||.
T Consensus        91 ~~~~v~~~~d~~~~~L~~~~~vl~v~ST~G~Ge~Pdna~~F~~~L~~~~------~~~L~~~~faVfGLGDssY-~~Fc~  163 (600)
T PRK10953         91 LNVNLVNAGDYKFKQIAQEKLLIVVTSTQGEGEPPEEAVALHKFLFSKK------APKLENTAFAVFGLGDTSY-EFFCQ  163 (600)
T ss_pred             CCcEEechHhCCHhHhccCCeEEEEECCCCCCCCChhHHHHHHHHhhCc------CcCCCCCEEEEEccCccCH-HHHHH
Confidence            9999999999999999999999999999999999999999999997542      3569999999999999999 59999


Q ss_pred             HHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhcC
Q 038595          177 VAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGG  225 (534)
Q Consensus       177 aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~  225 (534)
                      ++|.+|++|++|||+|+++++.+|.+   .++.|++|.+++++.|....
T Consensus       164 ~~k~ld~rL~~lGA~rl~~~~d~D~~---~e~~~~~W~~~~~~~l~~~~  209 (600)
T PRK10953        164 AGKDFDSKLAELGAERLLDRVDADVE---YQAAASEWRARVVDALKSRA  209 (600)
T ss_pred             HHHHHHHHHHHCCCeEeecccccccc---cHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999988764   57899999999999997653

>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component

Probab=99.96  E-value=3.3e-28  Score=268.82  Aligned_cols=148  Identities=33%  Similarity=0.583  Sum_probs=137.5

Q ss_pred             CcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCc
Q 038595           68 NKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESAND  147 (534)
Q Consensus        68 ~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~D  147 (534)
                      .+++|+|||+|||||.+|+.|++.+.+.|+.+++.++++++++++.+++.+||++||||+|+||+|+..|+++|....  
T Consensus        59 ~~i~IlygSqTGnae~~A~~l~~~l~~~g~~~~v~~~~d~~~~~l~~~~~li~v~ST~GeGe~Pdna~~F~~~L~~~~--  136 (597)
T TIGR01931        59 KRVTILYGSQTGNARRLAKRLAEKLEAAGFSVRLSSADDYKFKQLKKERLLLLVISTQGEGEPPEEAISFHKFLHSKK--  136 (597)
T ss_pred             CeEEEEEECCchHHHHHHHHHHHHHHhCCCccEEechHHCCHhhcccCceEEEEeCCCCCCcCCHHHHHHHHHHHhCC--
Confidence            469999999999999999999999999999999999999999999999999999999999999999999999998642  


Q ss_pred             ccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhcC
Q 038595          148 FRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGG  225 (534)
Q Consensus       148 FRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~  225 (534)
                          ...|++++||||||||++|+ +||.++|.+|++|+++||+|++|++.+|.+   ++..|++|.+++++.|....
T Consensus       137 ----~~~L~~~~~aVfGLGDssY~-~fc~~~k~~d~~L~~lGa~ri~~~~~~D~~---~e~~~~~W~~~~~~~l~~~~  206 (597)
T TIGR01931       137 ----APKLENLRYSVLGLGDSSYE-FFCQTGKDFDKRLEELGGKRLLPRVDADLD---YDANAAEWRAGVLTALNEQA  206 (597)
T ss_pred             ----CcccCCCeEEEEeCCcCCHH-HHhHHHHHHHHHHHHcCCeEeeccccCccC---hHHHHHHHHHHHHHHHHhhc
Confidence                34689999999999999994 999999999999999999999999998864   67899999999999987643

This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.

>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]

Probab=99.95  E-value=1.4e-28  Score=260.36  Aligned_cols=153  Identities=32%  Similarity=0.473  Sum_probs=144.6

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      +++|+||||||||+.+|+.|..++.++|+.+.|+.+++||+++|.+..++||||||+|+|++|+|+..||..|...+   
T Consensus         2 ~i~ILYGSqTGtA~dvAe~l~Re~~r~~~~~~V~s~Deyd~~~ll~~~~vvFVcSTTGqGe~P~Nmk~~WrfL~rkn---   78 (574)
T KOG1159|consen    2 KILILYGSQTGTAQDVAESLGREAHRRGLQCLVMSMDEYDVEKLLDERLVVFVCSTTGQGEEPDNMKKFWRFLLRKN---   78 (574)
T ss_pred             ceEEEeecCcccHHHHHHHHHHHHHhccCCceEeeccccCHhHhccCceEEEEEecCCCCCCCccHHHHHHHHhhcc---
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999987653   


Q ss_pred             cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHHHHHHhcCC
Q 038595          149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVVAILKSGGD  226 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~~~L~~~~~  226 (534)
                       ++...|+++.|||||||||+|+ +||.++|+++++|.+|||+.++|+++||+++. +++..|..|...+|..|....+
T Consensus        79 -Lps~~L~~~~~AvlGLGDSsY~-KfNy~aKKL~~RL~qLGA~~~~~~glgDdQh~~G~eg~~~pW~~~lw~~L~~i~~  155 (574)
T KOG1159|consen   79 -LPSTILQHMQFAVLGLGDSSYP-KFNYAAKKLHRRLRQLGANSVCPRGLGDDQHEEGIEGVFDPWLKELWSYLKGIYP  155 (574)
T ss_pred             -chHHHHhhhhheeeecCcccch-hhhHHHHHHHHHHHHhCcccccccccccccccccchhhhHHHHHHHHHHHHhhcC
Confidence             5677899999999999999996 99999999999999999999999999999965 6899999999999999987765

>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase

Probab=99.95  E-value=6.8e-28  Score=217.27  Aligned_cols=139  Identities=32%  Similarity=0.586  Sum_probs=123.6

Q ss_pred             EEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCC--ccCcCCCCeEEEEeccCCCCCCchHHH-HHHHHHHhhcCcc
Q 038595           72 LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYE--PEDLSKEALVLIVASSWEDGKPPEAAK-FFMNWIDESANDF  148 (534)
Q Consensus        72 I~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d--~~dL~~~~lvIfv~STYg~G~pPdna~-~Fle~L~e~~~DF  148 (534)
                      |+|+|+||||+++|+.|++.|.++|++++++++++++  +.++...+++||++|||+.|.||+++. .|..|+.....+ 
T Consensus         1 I~Y~S~tG~te~~A~~ia~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~~~~~~-   79 (143)
T PF00258_consen    1 IVYGSMTGNTEKMAEAIAEGLRERGVEVRVVDLDDFDDSPSDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLELKGKE-   79 (143)
T ss_dssp             EEEETSSSHHHHHHHHHHHHHHHTTSEEEEEEGGGSCHHHHHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHHHHHHG-
T ss_pred             CEEECCchhHHHHHHHHHHHHHHcCCceeeechhhhhhhhhhhhhhceeeEeecccCCCcchhhhhhhhhhcccccccc-
Confidence            8999999999999999999999999999999999999  448889999999999999999999887 666666543111 


Q ss_pred             cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCC-CCcHHHHHHH
Q 038595          149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDG-GELDVVFEDW  213 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~-g~~e~~f~eW  213 (534)
                       .....|++++|||||+||+.|+ +||.+++.++++|+++|++++.|++++|... ++.++.|++|
T Consensus        80 -~~~~~l~~~~~avfg~Gd~~~~-~f~~~~k~l~~~l~~~G~~~~~~~~~~d~~~~~~~e~~~~~W  143 (143)
T PF00258_consen   80 -LSKPDLKGKKYAVFGLGDSGYG-GFCAAAKKLDERLEELGAKRVGPLLEIDEAPSDDLEEDFEEW  143 (143)
T ss_dssp             -GGGSHCTTCEEEEEEEEETTSS-TTTHHHHHHHHHHHHTTEEEESSSEEEETTTHGGHHHHHHHH
T ss_pred             -ccccccccceeeeeecCCccch-hhhhHHHHHHHHHHHCCCEEEECcEEEecCCCcChHHHHhCC
Confidence             1245789999999999999997 5999999999999999999999999999986 4678999999

Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....

>PRK07308 flavodoxin; Validated

Probab=99.93  E-value=3.9e-25  Score=202.06  Aligned_cols=141  Identities=20%  Similarity=0.280  Sum_probs=126.2

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      ++.|+|+|+||||+++|+.|++.|.+.|+.+++.++++.++.++.+++.+||++|||+.|.+|+++..|+++|++.    
T Consensus         3 ~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~~~l~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~----   78 (146)
T PRK07308          3 LAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTVDASDFEDADIAIVATYTYGDGELPDEIVDFYEDLADL----   78 (146)
T ss_pred             eEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccCCHhHhccCCEEEEEeCccCCCCCCHHHHHHHHHHhcC----
Confidence            5899999999999999999999999999999999999998888888999999999999999999999999999763    


Q ss_pred             cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHHH
Q 038595          149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVVA  219 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~~  219 (534)
                           .|++++|+|||+||+.|+ +||.+++.++++|.++||+++.|...++.... +.-+.+.+|.++|.+
T Consensus        79 -----~l~~k~~~vfG~Gd~~y~-~~~~a~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~  144 (146)
T PRK07308         79 -----DLSGKIYGVVGSGDTFYD-YFCKSVDDFEAQFALTGATKGAESVKVDLAAEDEDIERLEAFAEELAA  144 (146)
T ss_pred             -----CCCCCEEEEEeeCCCCHH-HHHHHHHHHHHHHHHcCCeEccCcEEEeCCCCHHHHHHHHHHHHHHHh
Confidence                 578999999999999995 99999999999999999999999999988743 223456677777654

>PRK06703 flavodoxin; Provisional

Probab=99.91  E-value=2.3e-23  Score=191.17  Aligned_cols=145  Identities=21%  Similarity=0.247  Sum_probs=130.5

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      +++|+|+|+||||+++|+.|++.|.+.|+.++++++.+.++.++.+++.+||++|||+.|.+|+++..|+++|...    
T Consensus         3 kv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~----   78 (151)
T PRK06703          3 KILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENI----   78 (151)
T ss_pred             eEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCHHHHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcC----
Confidence            5899999999999999999999999999999999999988888889999999999999999999999999998643    


Q ss_pred             cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC--CcHHHHHHHHHHHHHHHHh
Q 038595          149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG--ELDVVFEDWSKRVVAILKS  223 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g--~~e~~f~eW~~~L~~~L~~  223 (534)
                           .+++++++|||+||+.|+ +||.+++.++++|+++|++++.+...++...+  +..+.+.+|.++|.+.+++
T Consensus        79 -----~l~~k~~~vfg~g~~~y~-~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  149 (151)
T PRK06703         79 -----DLSGKKVAVFGSGDTAYP-LFCEAVTIFEERLVERGAELVQEGLKIELAPETDEDVEKCSNFAIAFAEKFAQ  149 (151)
T ss_pred             -----CCCCCEEEEEccCCCChH-HHHHHHHHHHHHHHHCCCEEcccCeEEecCCCchhHHHHHHHHHHHHHHHHHh
Confidence                 578999999999999996 99999999999999999999998888887642  3446788999999877653

>PRK09271 flavodoxin; Provisional

Probab=99.87  E-value=2.6e-21  Score=180.36  Aligned_cols=140  Identities=17%  Similarity=0.267  Sum_probs=118.8

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCcc----CcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhh
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPE----DLSKEALVLIVASSWEDGKPPEAAKFFMNWIDES  144 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~----dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~  144 (534)
                      +++|+|+|+||||+++|+.|++.|.+.|+.+++.++.+.+..    ++.+++++||++|||+.|.+|+++..|+++|.+.
T Consensus         2 kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~   81 (160)
T PRK09271          2 RILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAET   81 (160)
T ss_pred             eEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999988776633    4456789999999999999999999999999763


Q ss_pred             cCcccccccCCCCCeEEEEEecCcchH-HHHHHHHHHHHHHHHHcCCceecceEEeeCCCCC--cHHHHHHHHHHHHHHH
Q 038595          145 ANDFRVGSLLLSNCKFAVFGVGSKSYE-KTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGE--LDVVFEDWSKRVVAIL  221 (534)
Q Consensus       145 ~~DFRv~~~~Lkgl~yAVFGLGDs~Y~-e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~--~e~~f~eW~~~L~~~L  221 (534)
                               ..++++++|||+||+.|+ ++||.+++.++++|..+     .|..+++...+.  ..+.+.+|..++++.+
T Consensus        82 ---------~~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~-----~~~l~~~~~p~~~~d~~~~~~~~~~~~~~~  147 (160)
T PRK09271         82 ---------IGKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS-----YPRLKIEQMPHGERDAAAIDNWTDKVLALC  147 (160)
T ss_pred             ---------hccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc-----CCceeeecCCccchhHHHHHHHHHHHHHHh
Confidence                     236789999999999996 69999999999999753     466777765321  2378999999999988


Q ss_pred             H
Q 038595          222 K  222 (534)
Q Consensus       222 ~  222 (534)
                      .
T Consensus       148 ~  148 (160)
T PRK09271        148 K  148 (160)
T ss_pred             h
Confidence            3

>PRK12359 flavodoxin FldB; Provisional

Probab=99.87  E-value=5.2e-21  Score=182.04  Aligned_cols=143  Identities=20%  Similarity=0.266  Sum_probs=121.1

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      ++.|+|+|.|||||.+|+.|++.+..  -.++++++++++++++..++++||++|||+.|++|+++..|+..|.+     
T Consensus         2 ki~I~Y~S~TGNTe~vAe~I~~~lg~--~~v~v~~i~~~~~~~l~~yD~iIlG~pTw~~Gel~~d~~~~~~~l~~-----   74 (172)
T PRK12359          2 KIGLFYGSSTCYTEMAAEKIRDIIGE--ELVDLHNLKDDPPKLMEQYDVLILGIPTWDFGEIQEDWEAVWDQLDD-----   74 (172)
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHhCC--CeEEEEEcccCChhHHccCCEEEEEecccCCCcCcHHHHHHHHHHhh-----
Confidence            48999999999999999999999842  24789999999998999999999999999999999999999888764     


Q ss_pred             cccccCCCCCeEEEEEecCc-chHHHHHHHHHHHHHHHHHcCCceecce-----------E-----------EeeCCC--
Q 038595          149 RVGSLLLSNCKFAVFGVGSK-SYEKTFNMVAKDLSKKMRELGAGEVLPV-----------V-----------EGDVDG--  203 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs-~Y~e~Fc~aAK~LDk~L~kLGA~rV~pl-----------g-----------~gD~~~--  203 (534)
                          ..|+|+++||||+||+ .|+++||.+++.++++|.+.||+.+...           .           .+|+..  
T Consensus        75 ----~dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl~lD~~nq~  150 (172)
T PRK12359         75 ----LNLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGLALDEVNQY  150 (172)
T ss_pred             ----CCCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEcCCCEEEEEEEcCCCch
Confidence                3689999999999998 6999999999999999999999877421           1           133332  


Q ss_pred             CCcHHHHHHHHHHHHHHHH
Q 038595          204 GELDVVFEDWSKRVVAILK  222 (534)
Q Consensus       204 g~~e~~f~eW~~~L~~~L~  222 (534)
                      +..+++++.|.++|.+.+.
T Consensus       151 ~~t~~ri~~W~~~~~~~~~  169 (172)
T PRK12359        151 DLSDERIQQWCEQILLEMA  169 (172)
T ss_pred             hhhHHHHHHHHHHHHHHHH
Confidence            2257899999999987764

>TIGR01753 flav_short flavodoxin, short chain

Probab=99.86  E-value=3.4e-21  Score=171.94  Aligned_cols=137  Identities=24%  Similarity=0.322  Sum_probs=118.9

Q ss_pred             EEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCc-hHHHHHHHHHHhhcCcc
Q 038595           70 GKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP-EAAKFFMNWIDESANDF  148 (534)
Q Consensus        70 VlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pP-dna~~Fle~L~e~~~DF  148 (534)
                      |+|+|+|+||||+++|+.|++.+.+.|++++++++.+.++.++..++.+||++|||+.|.+| +++..|+++|...    
T Consensus         1 v~Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~~~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~----   76 (140)
T TIGR01753         1 ILIVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADADAEDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDI----   76 (140)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccCCHHHHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhC----
Confidence            57999999999999999999999999999999999999888888899999999999999998 8899999998642    


Q ss_pred             cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHH
Q 038595          149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRV  217 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L  217 (534)
                           .++|++++|||+|++.|+  ||.+++.++++|+++|++++.+....+.... +..+.+.+|.++|
T Consensus        77 -----~~~gk~~~vfgt~g~~~~--f~~~~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~~~~l  139 (140)
T TIGR01753        77 -----DLGGKKVALFGSGDWGYE--FCEAVDDWEERLKEAGATIIAEGLKVDGDPEEEDLDKCREFAKDL  139 (140)
T ss_pred             -----CCCCCEEEEEecCCCCch--hhHHHHHHHHHHHHCCCEEecCCeeeecCCCHHHHHHHHHHHHHh
Confidence                 478999999999998884  9999999999999999999998777765432 2234566676554

Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.

>PRK06756 flavodoxin; Provisional

Probab=99.86  E-value=1e-20  Score=173.05  Aligned_cols=143  Identities=22%  Similarity=0.313  Sum_probs=123.2

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCC-ccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYE-PEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESAND  147 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d-~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~D  147 (534)
                      +++|+|+|+||||+++|+.|++.|.+.|+.++++++.+.+ ..++.+++.+||++|||+.|.+|+++..|++.|..    
T Consensus         3 kv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~----   78 (148)
T PRK06756          3 KLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEASILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDS----   78 (148)
T ss_pred             eEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCHHHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhc----
Confidence            5999999999999999999999999999999999998763 45677889999999999999999989999888754    


Q ss_pred             ccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHHHHH
Q 038595          148 FRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVVAIL  221 (534)
Q Consensus       148 FRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~~~L  221 (534)
                           ..|+|+++++||+|++.|+ +||.+.+.+.+.|.++|++.+.+...+....+ +.-+.+.+|.+.|.++|
T Consensus        79 -----~~l~~k~~~~fgt~~~~y~-~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~p~~~d~~~~~~~~~~~~~~~  147 (148)
T PRK06756         79 -----IDLTGKKAAVFGSCDSAYP-KYGVAVDILIEKLQERGAAVVLEGLKVELTPEDEDVEKCLQFGAEFVKHL  147 (148)
T ss_pred             -----CCCCCCEEEEEeCCCCchH-HHHHHHHHHHHHHHHCCCEEcCCCeEEecCCCHHHHHHHHHHHHHHHHhc
Confidence                 2578999999999999996 99999999999999999999999888877643 12345567777776654

>TIGR01752 flav_long flavodoxin, long chain

Probab=99.85  E-value=2.3e-20  Score=175.14  Aligned_cols=117  Identities=24%  Similarity=0.325  Sum_probs=105.3

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      ++.|+|+|+||||+++|+.|++.|.+  ..++++++++.++.++.+++++||++|||+.|.+|+++..|++.|..     
T Consensus         1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~--~~~~i~~~~~~~~~~l~~~d~ii~gspty~~g~~p~~~~~fl~~l~~-----   73 (167)
T TIGR01752         1 KIGIFYGTDTGNTEGIAEKIQKELGE--DDVDVFNIAKASKEDLNAYDKLILGTPTWGVGELQEDWEDFLPTLEE-----   73 (167)
T ss_pred             CEEEEEECCCChHHHHHHHHHHHhCC--CceEEEEcccCCHhHHhhCCEEEEEecCCCCCcCcHHHHHHHHHhhc-----
Confidence            48999999999999999999999974  46889999998888888999999999999999999999999888754     


Q ss_pred             cccccCCCCCeEEEEEecCc-chHHHHHHHHHHHHHHHHHcCCceecce
Q 038595          149 RVGSLLLSNCKFAVFGVGSK-SYEKTFNMVAKDLSKKMRELGAGEVLPV  196 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs-~Y~e~Fc~aAK~LDk~L~kLGA~rV~pl  196 (534)
                          ..|+|++++|||+||+ .|+++||.+++.+++.|+++|++.+...
T Consensus        74 ----~~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~  118 (167)
T TIGR01752        74 ----LDFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFW  118 (167)
T ss_pred             ----CCCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEcee
Confidence                3678999999999998 5888999999999999999999988643

Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.

>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative

Probab=99.84  E-value=3.7e-20  Score=168.55  Aligned_cols=132  Identities=21%  Similarity=0.325  Sum_probs=109.1

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceE-EECCCCCC--ccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFD-LVDPQTYE--PEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESA  145 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~-V~dL~d~d--~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~  145 (534)
                      +++|+|+|+||||+++|+.|++.|...|+.++ +.++.+++  +.++.+++.+||++|||+.|.+|+++..|+++|..  
T Consensus         2 ~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~--   79 (140)
T TIGR01754         2 RILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGY--   79 (140)
T ss_pred             eEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcc--
Confidence            48999999999999999999999999998887 66776542  34566789999999999999999999999888742  


Q ss_pred             CcccccccCCCCCeEEEEEecCcchH-HHHHHHHHHHHHHHHHcCCceecceEEeeCCCC--CcHHHHHHHHHHH
Q 038595          146 NDFRVGSLLLSNCKFAVFGVGSKSYE-KTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG--ELDVVFEDWSKRV  217 (534)
Q Consensus       146 ~DFRv~~~~Lkgl~yAVFGLGDs~Y~-e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g--~~e~~f~eW~~~L  217 (534)
                                ++++|||||+||+.|+ ++||.+++.++++|..+     .|..+++...+  .....+.+|.+++
T Consensus        80 ----------~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~-----~~~~~i~~~~~~~~d~~~~~~~~~~~  139 (140)
T TIGR01754        80 ----------KPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSS-----HPVLKIEQMPHGEQDGRAIYDWLEGV  139 (140)
T ss_pred             ----------cCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCc-----CCceeEecCCcccccHHHHHHHHHHh
Confidence                      5789999999999996 69999999999999775     45667766422  1246788998876

This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.

>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]

Probab=99.81  E-value=8.4e-20  Score=201.37  Aligned_cols=151  Identities=31%  Similarity=0.551  Sum_probs=139.1

Q ss_pred             CCcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcC
Q 038595           67 PNKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESAN  146 (534)
Q Consensus        67 ~~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~  146 (534)
                      ...++|+|||+|||++.+|+.+++.+...|+++.+.+++++++.++.....++|++||+|+|++|+|+..|+++|...  
T Consensus        47 ~~~~~il~~sqtG~a~~~A~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~st~geGe~p~na~~f~~~l~~~--  124 (587)
T COG0369          47 NKPITVLYGSQTGNAEGLAEELAKELEAAGLQVLVASLDDYKPKDIAEERLLLFVVSTQGEGEPPDNAVAFHEFLKGK--  124 (587)
T ss_pred             CCceEEEEccCCccHHHHHHHHHHHHHhcCCceeecchhhcChhhHHhhhceEEEEccccCCCCCCchHHHHHHhccc--
Confidence            445999999999999999999999999999999999999999999876678999999999999999999999999864  


Q ss_pred             cccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhcCC
Q 038595          147 DFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGGD  226 (534)
Q Consensus       147 DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~~  226 (534)
                          ....|.++.|||||+||++|. .||.+++.++++|..+||.++.+++.+|..  +++.....|...+++.+....+
T Consensus       125 ----~a~~L~~l~yav~~lGDssy~-~~~~~~k~~~~~l~~~Ga~~l~~~~~~D~~--~~e~~~~~w~~~~~~~l~~~~~  197 (587)
T COG0369         125 ----KAPKLDGLRYAVLGLGDSSYE-FFCQAGKDFDRRLQELGATRLFPRVEADVQ--DFEAAAAPWRDDVLELLKSKFP  197 (587)
T ss_pred             ----ccccccccchhhhcCCccchh-hhhccchhhHHHHHhcCcccccCccccccc--ccchhhhHHHHHHHHHHHhhcc
Confidence                246799999999999999997 999999999999999999999999999985  3678899999999999987664

>COG0716 FldA Flavodoxins [Energy production and conversion]

Probab=99.79  E-value=1.8e-18  Score=159.80  Aligned_cols=143  Identities=20%  Similarity=0.315  Sum_probs=120.2

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      ++.|+|+|+|||||.+|+.|++.|.+.++.+.+......+..++..++.+++++|||+.|+.|+++..|+..|..     
T Consensus         3 ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~t~~~ge~~~~~~~f~~~~~~-----   77 (151)
T COG0716           3 KILIVYGSRTGNTEKVAEIIAEELGADGFEVDIDIRPGIKDDLLESYDELLLGTPTWGAGELPDDWYDFIEELEP-----   77 (151)
T ss_pred             eEEEEEEcCCCcHHHHHHHHHHHhccCCceEEEeecCCcchhhhccCCEEEEEeCCCCCCcCCccHHHHHHHhcc-----
Confidence            599999999999999999999999999998865555555544455789999999999999999989999988865     


Q ss_pred             cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcC--CceecceEEe--eCC-CCCcHHHHHHHHHHHHHH
Q 038595          149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELG--AGEVLPVVEG--DVD-GGELDVVFEDWSKRVVAI  220 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLG--A~rV~plg~g--D~~-~g~~e~~f~eW~~~L~~~  220 (534)
                          ..++++.||+||+||+.|..+||.+...+..+|+..|  +....|....  |.. ++..+.++.+|.++++..
T Consensus        78 ----~~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~w~~~~~~~  150 (151)
T COG0716          78 ----IDFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLGYIFDASPNEEDEKRIKEWVKQILNE  150 (151)
T ss_pred             ----cCcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccceeccCCCCCccHHHHHHHHHHHHhh
Confidence                3679999999999999985349999999999999999  6667776666  333 345678999999998764

>PRK09267 flavodoxin FldA; Validated

Probab=99.79  E-value=2.1e-18  Score=161.11  Aligned_cols=142  Identities=26%  Similarity=0.321  Sum_probs=117.3

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      +++|+|+|+||||+++|+.|++.|..  ..++++++.+.++.++..++.+||++|||+.|.+|+.+..|++.+..     
T Consensus         3 ki~IiY~S~tGnT~~vA~~Ia~~l~~--~~~~~~~~~~~~~~~l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~-----   75 (169)
T PRK09267          3 KIGIFFGSDTGNTEDIAKMIQKKLGK--DVADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEE-----   75 (169)
T ss_pred             eEEEEEECCCChHHHHHHHHHHHhCC--CceEEEEhhhCCHhhHhhCCEEEEEecCcCCCCCCHHHHHHHHHHhc-----
Confidence            58999999999999999999999964  36789999988877888899999999999999999988889887643     


Q ss_pred             cccccCCCCCeEEEEEecCc-chHHHHHHHHHHHHHHHHHcCCceecce---E-----------------EeeCCC--CC
Q 038595          149 RVGSLLLSNCKFAVFGVGSK-SYEKTFNMVAKDLSKKMRELGAGEVLPV---V-----------------EGDVDG--GE  205 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs-~Y~e~Fc~aAK~LDk~L~kLGA~rV~pl---g-----------------~gD~~~--g~  205 (534)
                          ..|+++++++||+||+ .|+++||.+.+.+.+.|.+.|++.+...   +                 ..|.+.  +-
T Consensus        76 ----~~l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~~~~~~~~~g~~~d~~~~~~~  151 (169)
T PRK09267         76 ----IDFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAVDDGKFVGLALDEDNQSEL  151 (169)
T ss_pred             ----CCCCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccceeeCCEEEEEEecCCCchhh
Confidence                3688999999999998 5888999999999999999998766531   1                 122221  12


Q ss_pred             cHHHHHHHHHHHHHHH
Q 038595          206 LDVVFEDWSKRVVAIL  221 (534)
Q Consensus       206 ~e~~f~eW~~~L~~~L  221 (534)
                      .+.++++|.++|.+.+
T Consensus       152 td~~i~~w~~~i~~~~  167 (169)
T PRK09267        152 TDERIEAWVKQIKPEF  167 (169)
T ss_pred             hHHHHHHHHHHHHHHh
Confidence            3678899999987754

>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]

Probab=99.73  E-value=5.5e-18  Score=187.82  Aligned_cols=148  Identities=31%  Similarity=0.519  Sum_probs=128.3

Q ss_pred             CcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCc-CCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcC
Q 038595           68 NKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDL-SKEALVLIVASSWEDGKPPEAAKFFMNWIDESAN  146 (534)
Q Consensus        68 ~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL-~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~  146 (534)
                      .++.|+|+|+||+++.+|.+|.+.+  .-++.+.+.+.+++.-++ ....+++|+++|||.|.||+|++.|.+||.+...
T Consensus        47 ~~~~v~~~s~tgtae~~a~~l~~~~--~~~~~~~~~~~d~~~~~l~~~~~l~~~~~at~g~gd~~dn~~~f~~~l~~~~~  124 (645)
T KOG1158|consen   47 VKATVLYGSQTGTAEDFAKRLSEIF--ARFELKVLKVADYDLYALEDHEKLLVVVLATYGEGDPPDNAEAFYQSLTELKV  124 (645)
T ss_pred             eeEEEEeccCCCCHHHHHHHHHHHh--hhccccceeecchhhcccccccceeeeeeehhcCCCCCccHHHHHHHHhhccC
Confidence            4599999999999999999999999  445666666666665555 4567999999999999999999999999988642


Q ss_pred             cccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhcC
Q 038595          147 DFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGG  225 (534)
Q Consensus       147 DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~  225 (534)
                            .+...++|+|||+|++.|+ +||.+|+.+|+.|.++||+|++.++.||+.. +.+++|..|++.+++.++..+
T Consensus       125 ------~~~~~~~~~vFglg~~~y~-~f~~~a~~~d~~l~~lg~~rl~~~glgdd~~-~~e~~f~~w~~~~~~~~~~~f  195 (645)
T KOG1158|consen  125 ------LPSSLLRYAVFGLGNSTYE-HFNAFAKLVDNLLEELGANRLFQLGLGDDDA-GLEEDFRTWKKPLLPELCETF  195 (645)
T ss_pred             ------chhhhhhHHHhhccccchh-hhHHHHHHHHHHHHHhhhhhhhccccccccc-cchhHHHHHHHHHhHhhhhee
Confidence                  2344489999999999995 9999999999999999999999999999976 468999999999999887654

>PRK02551 flavoprotein NrdI; Provisional

Probab=99.72  E-value=1.8e-17  Score=155.55  Aligned_cols=121  Identities=17%  Similarity=0.330  Sum_probs=99.4

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhC--CCceEEECCCCCCccC---cCCCCeEEEEeccC-CCCCCchHHHHHHHHHH
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSN--DLLFDLVDPQTYEPED---LSKEALVLIVASSW-EDGKPPEAAKFFMNWID  142 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~--Gl~v~V~dL~d~d~~d---L~~~~lvIfv~STY-g~G~pPdna~~Fle~L~  142 (534)
                      .+.|+|+|+||||++||++|...+.++  ++++..+++.++..++   +.....+|+++||| +.|.+|+++.+  +|+.
T Consensus         3 ~~~I~Y~S~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~p~vli~pTY~~gG~~~~~~~~--~~vp   80 (154)
T PRK02551          3 TITLVYISLSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHETTDFFPETEPFVAFLPTYLEGGNGIDNGDV--EILT   80 (154)
T ss_pred             ceEEEEEeCChhHHHHHHHHhcHHhhccccccceecccccccCccccccccCCCEEEEEeeecCCCCCcccCcc--ccch
Confidence            489999999999999999999876542  4556667766664322   45667899999999 88888888766  8888


Q ss_pred             hhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecc
Q 038595          143 ESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLP  195 (534)
Q Consensus       143 e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~p  195 (534)
                      +...||+..+.. ++..+||||+||++|+++||.+|+.+++.   ++...++.
T Consensus        81 ~~v~dFL~~~~N-~~~~~gVigsGNrNfg~~F~~aa~~ia~~---~~vP~L~~  129 (154)
T PRK02551         81 TPLGDFIAYHDN-AKRCLGIIGSGNRNFNNQYCLTAKQYAKR---FGFPMLAD  129 (154)
T ss_pred             HHHHHHHcchhh-hhheEEEEeecccHHHHHHHHHHHHHHHH---cCCCEEEE
Confidence            888899887666 78899999999999999999999999987   67666654

>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional

Probab=99.65  E-value=7.9e-16  Score=162.38  Aligned_cols=140  Identities=15%  Similarity=0.174  Sum_probs=118.8

Q ss_pred             CCcEEEEEECccchHHHHHHHHHHHHh--hCCCceEEECCCCCCccCc----CCCCeEEEEeccCCCCCCchHHHHHHHH
Q 038595           67 PNKGKLFFISQTGTSKTLAKRLHALLT--SNDLLFDLVDPQTYEPEDL----SKEALVLIVASSWEDGKPPEAAKFFMNW  140 (534)
Q Consensus        67 ~~kVlI~YgSqTGtTE~lAe~La~~L~--~~Gl~v~V~dL~d~d~~dL----~~~~lvIfv~STYg~G~pPdna~~Fle~  140 (534)
                      .++++|+|+|+||||+++|+.|++.+.  ..|++++++++.+.+++++    .+.+.+||++|||+.|.+|+ +..|+++
T Consensus       247 ~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~i~~~~~~~d~ii~GspT~~~~~~~~-~~~~l~~  325 (394)
T PRK11921        247 ENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKNDIITEVFKSKAILVGSSTINRGILSS-TAAILEE  325 (394)
T ss_pred             cCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHHHHHHHHHhCCEEEEECCCcCccccHH-HHHHHHH
Confidence            356999999999999999999999998  7899999999999987764    45889999999999998865 8889888


Q ss_pred             HHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHHH
Q 038595          141 IDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVVA  219 (534)
Q Consensus       141 L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~~  219 (534)
                      |...         .++|+.+|+||+    |+ +||.+.+.+.+.|+++|++.+.|...+..... +..+.+.+|.++|.+
T Consensus       326 l~~~---------~~~~K~~a~FGs----yg-w~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~g~~la~  391 (394)
T PRK11921        326 IKGL---------GFKNKKAAAFGS----YG-WSGESVKIITERLKKAGFEIVNDGIRELWNPDDEALDRCRSFGENFAE  391 (394)
T ss_pred             hhcc---------CcCCCEEEEEec----CC-CccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            8653         578999999997    54 67999999999999999999998777766532 234567889998876


Q ss_pred             HH
Q 038595          220 IL  221 (534)
Q Consensus       220 ~L  221 (534)
                      .|
T Consensus       392 ~~  393 (394)
T PRK11921        392 SL  393 (394)
T ss_pred             hh
Confidence            54

>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI

Probab=99.62  E-value=6.1e-15  Score=134.15  Aligned_cols=93  Identities=18%  Similarity=0.280  Sum_probs=75.9

Q ss_pred             EEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCccccc
Q 038595           72 LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVG  151 (534)
Q Consensus        72 I~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~  151 (534)
                      |+|+|+||||++|+++       .|+++..+.+++.++.++ +++.+++ ++|||+|+.|+.+..|++.+++        
T Consensus         1 IvY~S~TGNte~fv~~-------lg~~~~~i~~~~~d~~~~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~n--------   63 (125)
T TIGR00333         1 IYFSSKTGNVQRFVEK-------LGFQHIRIPVDETDDIHV-DQEFVLI-TYTGGFGAVPKQTISFLNKKHN--------   63 (125)
T ss_pred             CEEEcccccHHHHHHH-------cCCCcEEeecCCcchhhc-CCCEEEE-ecCCCCCcCCHHHHHHHHhhhh--------
Confidence            6899999999999444       355666677776665555 5666655 9999999999999999877642        


Q ss_pred             ccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHH
Q 038595          152 SLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRE  187 (534)
Q Consensus       152 ~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~k  187 (534)
                            +.+||||+||+.|+++||.+++.+.+.+..
T Consensus        64 ------~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~   93 (125)
T TIGR00333        64 ------LLRGVAASGNKVWGDNFALAGDVISRKLNV   93 (125)
T ss_pred             ------cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence                  689999999999988999999999999766

Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.

>PRK05569 flavodoxin; Provisional

Probab=99.61  E-value=1.1e-14  Score=131.68  Aligned_cols=135  Identities=15%  Similarity=0.110  Sum_probs=106.1

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCc-hHHHHHHHHHHhhcCc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP-EAAKFFMNWIDESAND  147 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pP-dna~~Fle~L~e~~~D  147 (534)
                      +++|+|+|.||||+++|+.|++.+.+.|..++++++.+.+..++.+++.+||++|||+.+.+| +.+..|++.|...   
T Consensus         3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~---   79 (141)
T PRK05569          3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKVEDVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLT---   79 (141)
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCHHHHhhCCEEEEECCCcCCCcCChHHHHHHHHHhhcc---
Confidence            589999999999999999999999989999999999999888888999999999999988654 6788898887542   


Q ss_pred             ccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHH
Q 038595          148 FRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRV  217 (534)
Q Consensus       148 FRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L  217 (534)
                            .++|+.+++||.+...    ++.+.+.+.+.|.++|++.+.+ ..+....+ +..+.+.+|.++|
T Consensus        80 ------~~~~K~v~~f~t~g~~----~~~~~~~~~~~l~~~g~~~~~~-~~~~~~p~~~~~~~~~~~g~~l  139 (141)
T PRK05569         80 ------PNENKKCILFGSYGWD----NGEFMKLWKDRMKDYGFNVIGD-LAVNESPNKEELNSAKELGKKL  139 (141)
T ss_pred             ------CcCCCEEEEEeCCCCC----CCcHHHHHHHHHHHCCCeEeee-EEEccCCCHHHHHHHHHHHHHH
Confidence                  4689999999975222    2456788899999999988765 34332221 1223455665555

>PRK05568 flavodoxin; Provisional

Probab=99.59  E-value=2.4e-14  Score=129.47  Aligned_cols=136  Identities=17%  Similarity=0.168  Sum_probs=107.5

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCc-hHHHHHHHHHHhhcCc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP-EAAKFFMNWIDESAND  147 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pP-dna~~Fle~L~e~~~D  147 (534)
                      +++|+|.|+||||+++|+.|++.+.+.|+.++++++.+.+..++.+++.+||++|||+.|.+| ..+..|++.+..    
T Consensus         3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~----   78 (142)
T PRK05568          3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASVDDVKGADVVALGSPAMGDEVLEEGEMEPFVESISS----   78 (142)
T ss_pred             eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHhCCEEEEECCccCcccccchhHHHHHHHhhh----
Confidence            589999999999999999999999999999999999999888888999999999999988864 678888887643    


Q ss_pred             ccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCC-CCcHHHHHHHHHHHH
Q 038595          148 FRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDG-GELDVVFEDWSKRVV  218 (534)
Q Consensus       148 FRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~-g~~e~~f~eW~~~L~  218 (534)
                            .++++++++||..  .|+  ...+.+.+.+.|+++|++.+.+...+.... .+..+.+.+|.+.|.
T Consensus        79 ------~~~~k~~~~f~t~--G~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~l~~~~~~g~~l~  140 (142)
T PRK05568         79 ------LVKGKKLVLFGSY--GWG--DGEWMRDWVERMEGYGANLVNEGLIVNNTPEGEGIEKCKALGEALA  140 (142)
T ss_pred             ------hhCCCEEEEEEcc--CCC--CChHHHHHHHHHHHCCCEEeCCcEEEecCCCHHHHHHHHHHHHHHH
Confidence                  3588999999972  332  134578889999999999888755544332 122345566766654

>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional

Probab=99.57  E-value=1.8e-14  Score=156.25  Aligned_cols=140  Identities=9%  Similarity=0.132  Sum_probs=117.2

Q ss_pred             CCcEEEEEECccchHHHHHHHHHHHHhhC--CCceEEECCCCCCccCcC----CCCeEEEEeccCCCCCCchHHHHHHHH
Q 038595           67 PNKGKLFFISQTGTSKTLAKRLHALLTSN--DLLFDLVDPQTYEPEDLS----KEALVLIVASSWEDGKPPEAAKFFMNW  140 (534)
Q Consensus        67 ~~kVlI~YgSqTGtTE~lAe~La~~L~~~--Gl~v~V~dL~d~d~~dL~----~~~lvIfv~STYg~G~pPdna~~Fle~  140 (534)
                      ..+++|+|+|+|||||++|+.|++.+++.  |++++++++++.+++++.    +++.+||++|||+.+.+| .+..|++.
T Consensus       251 ~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~~~~~~ad~vilGspT~~~~~~p-~~~~fl~~  329 (479)
T PRK05452        251 EDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGSSTMNNVMMP-KIAGLLEE  329 (479)
T ss_pred             cCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHHhHHhhCCEEEEECCccCCcchH-HHHHHHHH
Confidence            34699999999999999999999999876  678999999999887754    478999999999988888 48889888


Q ss_pred             HHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHHH
Q 038595          141 IDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVVA  219 (534)
Q Consensus       141 L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~~  219 (534)
                      |...         .|+|+.++|||+    |+ ++|.+++.+.++|+.+|++.+ +...+..... +..+.+.++.++|.+
T Consensus       330 l~~~---------~l~gK~~~vFGS----yg-w~g~a~~~~~~~l~~~g~~~~-~~l~~~~~P~ee~~~~~~~~g~~la~  394 (479)
T PRK05452        330 ITGL---------RFRNKRASAFGS----HG-WSGGAVDRLSTRLQDAGFEMS-LSLKAKWRPDQDALELCREHGREIAR  394 (479)
T ss_pred             hhcc---------CcCCCEEEEEEC----CC-cCcHHHHHHHHHHHHCCCEEe-ccEEEEecCCHHHHHHHHHHHHHHHH
Confidence            8653         579999999997    44 579999999999999999986 4566666532 234677889999998


Q ss_pred             HHH
Q 038595          220 ILK  222 (534)
Q Consensus       220 ~L~  222 (534)
                      ++.
T Consensus       395 ~~~  397 (479)
T PRK05452        395 QWA  397 (479)
T ss_pred             HHh
Confidence            887

>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]

Probab=99.53  E-value=3e-14  Score=146.23  Aligned_cols=132  Identities=23%  Similarity=0.391  Sum_probs=112.1

Q ss_pred             ceeeecc--CCeeeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec
Q 038595          339 HSFYGIE--SHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD  416 (534)
Q Consensus       339 ~~fygi~--s~~c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~  416 (534)
                      |.-+|+-  ...-+|..||.-||.+|+||.........+.|...+.||+.+++..-     .+..+||. |         
T Consensus        96 ~~AFGlIdRGtNviqVRp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~-----kVa~~Kgk-g---------  160 (414)
T COG2100          96 HTAFGLIDRGTNVIQVRPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFE-----KVARFKGK-G---------  160 (414)
T ss_pred             ceeeeEEecCceEEEecCCccccceeEEEeccCCcccceeccceEecHHHHHHHHH-----HHHhhhCC-C---------
Confidence            6677774  78899999999999999999999888888889999999999888763     35667763 2         


Q ss_pred             cccccccccccccCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CCc-EEEEcCCCC-
Q 038595          417 FFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RIS-TFLVTNAQF-  493 (534)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi~-~~LvTNGtl-  493 (534)
                                                +            -..|.+.|||+|||+|.+|++.|++. |+. +.+.|||++ 
T Consensus       161 --------------------------l------------EaHlDGqGEP~lYP~l~~lVqalk~~~~v~vVSmQTng~~L  202 (414)
T COG2100         161 --------------------------L------------EAHLDGQGEPLLYPHLVDLVQALKEHKGVEVVSMQTNGVLL  202 (414)
T ss_pred             --------------------------e------------EEEecCCCCCccchhHHHHHHHHhcCCCceEEEEeeCceec
Confidence                                      2            25688899999999999999999997 776 889999997 


Q ss_pred             -HHHHhhcCC--CceEEEEeeCCCHHHHHhhcC
Q 038595          494 -PDKIKLLKP--VTQLYVSVDAATKDSLKAIDR  523 (534)
Q Consensus       494 -pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~r  523 (534)
                       .+.+++|.+  +|.+++||||.||+.-+.+.+
T Consensus       203 ~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G  235 (414)
T COG2100         203 SKKLVDELEEAGLDRINLSVDALDPKLAKMLAG  235 (414)
T ss_pred             cHHHHHHHHHhCCceEEeecccCCHHHHHHhcC
Confidence             456777775  899999999999999888876

>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed

Probab=99.53  E-value=8.8e-14  Score=127.83  Aligned_cols=124  Identities=15%  Similarity=0.203  Sum_probs=89.5

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCC----CCCchHHHHHHHHHHhh
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWED----GKPPEAAKFFMNWIDES  144 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~----G~pPdna~~Fle~L~e~  144 (534)
                      .+.|+|.|.||||+++|++|...       ...+++.+.  +.+.....++|++|||+.    |..|+....|++.+.+ 
T Consensus         2 ~~~I~Y~S~TGNt~~f~~kl~~~-------~~~i~i~~~--~~~~~~~~~~lv~PTy~~g~~~G~vP~~v~~Fl~~~~n-   71 (134)
T PRK03600          2 MMLVYFSSKTGNTHRFVQKLGLP-------ATRIPINER--ERLEVDEPYILITPTYGGGGTAGAVPKQVIRFLNDEHN-   71 (134)
T ss_pred             cEEEEEECCChhHHHHHHHhCCc-------ceEEecCCC--ccccCCCCEEEEEeccCCCCcCCcccHHHHHHHhcccc-
Confidence            47999999999999999988654       235556542  235556789999999999    6999988888766332 


Q ss_pred             cCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHHH
Q 038595          145 ANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVVA  219 (534)
Q Consensus       145 ~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~~  219 (534)
                                 +...++|||+||++|+++||.+++.+.+.+.   ...   +...+-... ...+.+.+|.++++.
T Consensus        72 -----------~~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~---vp~---l~k~El~gt~~Dv~~~~~~~~~~~~  130 (134)
T PRK03600         72 -----------RKLLRGVIASGNRNFGDAFALAGDVISAKCQ---VPL---LYRFELSGTNEDVENVRKGVEEFWQ  130 (134)
T ss_pred             -----------CCcEEEEEEecCchHHHHHHHHHHHHHHHhC---CCe---EEEEecCCCHHHHHHHHHHHHHHHh
Confidence                       2358999999999998899999999999855   222   234443311 123456777777743

>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E

Probab=99.46  E-value=2.6e-13  Score=140.73  Aligned_cols=76  Identities=20%  Similarity=0.244  Sum_probs=65.2

Q ss_pred             ceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCCCchh
Q 038595          455 RHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLFGDFW  530 (534)
Q Consensus       455 ~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~~~~w  530 (534)
                      ..+.|++ |||+|+|++.+++++++++|+.+.|+|||++  ++.++.|.+  ++.|.||||+.++++|+++++.  +..|
T Consensus        55 ~~v~~~G-GEPll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~--~g~f  131 (358)
T TIGR02109        55 LQLHFSG-GEPLARPDLVELVAHARRLGLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGY--KNAF  131 (358)
T ss_pred             cEEEEeC-ccccccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCC--ccHH
Confidence            4567777 9999999999999999999999999999997  678888875  7899999999999999999762  3356


Q ss_pred             hhc
Q 038595          531 ERF  533 (534)
Q Consensus       531 ~~~  533 (534)
                      +++
T Consensus       132 ~~v  134 (358)
T TIGR02109       132 EQK  134 (358)
T ss_pred             HHH
Confidence            654

This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.

>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional

Probab=99.43  E-value=6.4e-13  Score=139.07  Aligned_cols=76  Identities=16%  Similarity=0.222  Sum_probs=64.8

Q ss_pred             ceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCCCchh
Q 038595          455 RHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLFGDFW  530 (534)
Q Consensus       455 ~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~~~~w  530 (534)
                      ..+.|++ |||+|+|++.+++++++++|+.+.|.|||++  ++.++.|..  ++.+.||||+.++++|+++++.  +..|
T Consensus        64 ~~v~~~G-GEPll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~--~g~f  140 (378)
T PRK05301         64 LQLHFSG-GEPLLRKDLEELVAHARELGLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGT--KGAF  140 (378)
T ss_pred             cEEEEEC-CccCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCC--CchH
Confidence            4566776 9999999999999999999999999999996  678888865  7899999999999999999863  2356


Q ss_pred             hhc
Q 038595          531 ERF  533 (534)
Q Consensus       531 ~~~  533 (534)
                      +++
T Consensus       141 ~~~  143 (378)
T PRK05301        141 AKK  143 (378)
T ss_pred             HHH
Confidence            654

>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional

Probab=99.42  E-value=4.5e-13  Score=138.39  Aligned_cols=76  Identities=25%  Similarity=0.295  Sum_probs=62.8

Q ss_pred             CceEEEeecCCCCCCccHHHHHHHHHhcC-C-cEEEEcCCCC-HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCCCc
Q 038595          454 PRHCALSLVGEPIMYPEINTLVDELHRRR-I-STFLVTNAQF-PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLFGD  528 (534)
Q Consensus       454 ~~h~alSl~GEPlLyp~L~elI~~lk~~g-i-~~~LvTNGtl-pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~~~  528 (534)
                      ++++.|++ |||+|+|+|.++++++++.+ + .+.+.|||++ .+.++.|..  ++.+.||||+.+++.|++|.++   +
T Consensus        62 v~~I~~tG-GEPllr~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~---g  137 (329)
T PRK13361         62 VRKIRLTG-GEPLVRRGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKRLNISLDTLRPELFAALTRN---G  137 (329)
T ss_pred             CCEEEEEC-cCCCccccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCeEEEEeccCCHHHhhhhcCC---C
Confidence            35677776 99999999999999999985 4 6899999997 556667765  8999999999999999999974   3


Q ss_pred             hhhhc
Q 038595          529 FWERF  533 (534)
Q Consensus       529 ~w~~~  533 (534)
                      .|+++
T Consensus       138 ~~~~v  142 (329)
T PRK13361        138 RLERV  142 (329)
T ss_pred             CHHHH
Confidence            35543

>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal

Probab=99.42  E-value=7.5e-13  Score=134.29  Aligned_cols=76  Identities=21%  Similarity=0.335  Sum_probs=64.0

Q ss_pred             CceEEEeecCCCCCCccHHHHHHHHHhcCC-cEEEEcCCCC-HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCCCch
Q 038595          454 PRHCALSLVGEPIMYPEINTLVDELHRRRI-STFLVTNAQF-PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLFGDF  529 (534)
Q Consensus       454 ~~h~alSl~GEPlLyp~L~elI~~lk~~gi-~~~LvTNGtl-pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~~~~  529 (534)
                      ++++.|++ |||+++|++.++|+.+++.|+ .+.+.|||++ ++.++.|..  ++.+.||||+.+++.|++|++   ++.
T Consensus        57 i~~I~~tG-GEPll~~~l~~iv~~l~~~g~~~v~i~TNG~ll~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~---~~~  132 (302)
T TIGR02668        57 VRKVKITG-GEPLLRKDLIEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITG---RGA  132 (302)
T ss_pred             CCEEEEEC-cccccccCHHHHHHHHHhCCCceEEEEcCchHHHHHHHHHHHCCCCEEEEEecCCCHHHhhhccC---CCc
Confidence            45678887 999999999999999999999 8999999997 455666653  899999999999999999998   334


Q ss_pred             hhhc
Q 038595          530 WERF  533 (534)
Q Consensus       530 w~~~  533 (534)
                      |+++
T Consensus       133 ~~~v  136 (302)
T TIGR02668       133 LDRV  136 (302)
T ss_pred             HHHH
Confidence            5543

This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).

>PLN02951 Molybderin biosynthesis protein CNX2

Probab=99.40  E-value=1.3e-12  Score=137.80  Aligned_cols=121  Identities=21%  Similarity=0.318  Sum_probs=89.2

Q ss_pred             CCeeeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeecccccccccc
Q 038595          346 SHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSS  425 (534)
Q Consensus       346 s~~c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~  425 (534)
                      .|..+.+.++..||.+|.||........  ......-++++|..-+ +..    .. .|                     
T Consensus        56 ~~~~lrisvT~~CNlrC~yC~~~~~~~~--~~~~~~ls~eei~~~i-~~~----~~-~G---------------------  106 (373)
T PLN02951         56 RHNYLRISLTERCNLRCQYCMPEEGVEL--TPKSHLLSQDEIVRLA-GLF----VA-AG---------------------  106 (373)
T ss_pred             cccEEEEEEcCCcCcCCCCCCCCcCCCC--CCccccCCHHHHHHHH-HHH----HH-CC---------------------
Confidence            4556778888999999999987532211  1112234566665532 211    11 12                     


Q ss_pred             ccccCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CCc-EEEEcCCCC-HHHHhhcCC
Q 038595          426 AIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RIS-TFLVTNAQF-PDKIKLLKP  502 (534)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi~-~~LvTNGtl-pe~l~~L~~  502 (534)
                                                  ++.+.|++ |||+|+|+|.++|+++++. |+. +.|.|||++ ++.+++|.+
T Consensus       107 ----------------------------v~~I~~tG-GEPllr~dl~eli~~l~~~~gi~~i~itTNG~lL~~~~~~L~~  157 (373)
T PLN02951        107 ----------------------------VDKIRLTG-GEPTLRKDIEDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKE  157 (373)
T ss_pred             ----------------------------CCEEEEEC-CCCcchhhHHHHHHHHHhcCCCceEEEeeCcchHHHHHHHHHh
Confidence                                        34577787 9999999999999999997 885 889999996 566777765


Q ss_pred             --CceEEEEeeCCCHHHHHhhcCC
Q 038595          503 --VTQLYVSVDAATKDSLKAIDRP  524 (534)
Q Consensus       503 --v~qlyvSlDA~~~e~y~~I~rP  524 (534)
                        ++.+.||||+.+++.|++|.|.
T Consensus       158 aGld~VnISLDsl~~e~~~~itr~  181 (373)
T PLN02951        158 AGLTSLNISLDTLVPAKFEFLTRR  181 (373)
T ss_pred             CCCCeEEEeeccCCHHHHHHHhcC
Confidence              7999999999999999999874

>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein

Probab=99.38  E-value=2.5e-12  Score=121.83  Aligned_cols=67  Identities=16%  Similarity=0.221  Sum_probs=58.9

Q ss_pred             ceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCC---CceEEEEeeCCCHHHHHhhcC
Q 038595          455 RHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKP---VTQLYVSVDAATKDSLKAIDR  523 (534)
Q Consensus       455 ~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~---v~qlyvSlDA~~~e~y~~I~r  523 (534)
                      +.+.|++ |||+|+|++.++++++++.|+.+.+.|||+.++.++++..   ++.+.+|+|+. ++.|..+.+
T Consensus        64 ~~i~~sG-GEPll~~~l~~li~~~~~~g~~v~i~TNg~~~~~l~~l~~~g~~~~v~isl~~~-~~~~~~~~g  133 (191)
T TIGR02495        64 DGVVITG-GEPTLQAGLPDFLRKVRELGFEVKLDTNGSNPRVLEELLEEGLVDYVAMDVKAP-PEKYPELYG  133 (191)
T ss_pred             CeEEEEC-CcccCcHhHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHhcCCCcEEEEeccCC-hHHHHHHHC
Confidence            4577787 9999999999999999999999999999999988888764   68899999995 777888865

This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.

>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH

Probab=99.37  E-value=2e-12  Score=133.47  Aligned_cols=74  Identities=26%  Similarity=0.394  Sum_probs=58.2

Q ss_pred             eEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCCH-HHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCCCchhhh
Q 038595          456 HCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFP-DKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLFGDFWER  532 (534)
Q Consensus       456 h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlp-e~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~~~~w~~  532 (534)
                      .+.|++ |||||||+|.++|++++++|+.+.|.|||++. +.+.++.+  ...+.||||+.. +.|.++.+.  +..|++
T Consensus        75 ~V~i~G-GEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll~~~~~~l~~~~~~~i~VSLDG~~-e~hd~~~~~--~g~f~~  150 (318)
T TIGR03470        75 VVSIPG-GEPLLHPEIDEIVRGLVARKKFVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLR-EHHDASVCR--EGVFDR  150 (318)
T ss_pred             EEEEeC-ccccccccHHHHHHHHHHcCCeEEEecCceehHHHHHHHHhCCCcEEEEEEecCc-hhhchhhcC--CCcHHH
Confidence            366676 99999999999999999999999999999984 45666764  578999999975 677776432  234554


Q ss_pred             c
Q 038595          533 F  533 (534)
Q Consensus       533 ~  533 (534)
                      +
T Consensus       151 ~  151 (318)
T TIGR03470       151 A  151 (318)
T ss_pred             H
Confidence            3

The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH

>PRK06242 flavodoxin; Provisional

Probab=99.36  E-value=3.8e-12  Score=115.96  Aligned_cols=106  Identities=25%  Similarity=0.324  Sum_probs=86.4

Q ss_pred             cEEEEEECc-cchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCc
Q 038595           69 KGKLFFISQ-TGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESAND  147 (534)
Q Consensus        69 kVlI~YgSq-TGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~D  147 (534)
                      +++|+|.|. ||||+++|+.|++.|.     ++++++.+.+..++.+++.+||++|||. |.+|+.+..|++.+.     
T Consensus         2 k~~IiY~S~~tGnT~~~A~~ia~~l~-----~~~~~i~~~~~~~~~~~d~ii~g~pvy~-~~~~~~~~~fl~~~~-----   70 (150)
T PRK06242          2 KALIVYASVHHGNTEKIAKAIAEVLD-----AEVIDPGDVNPEDLSEYDLIGFGSGIYF-GKFHKSLLKLIEKLP-----   70 (150)
T ss_pred             cEEEEEeCCCCCCHHHHHHHHHHhcC-----cEEecHHHCCcccHhHCCEEEEeCchhc-CCcCHHHHHHHHhhh-----
Confidence            489999999 8999999999999883     5678888777777888999999999998 666767888877653     


Q ss_pred             ccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecc
Q 038595          148 FRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLP  195 (534)
Q Consensus       148 FRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~p  195 (534)
                            .++++++++||.+....+    ...+.+.+.|..+|++.+..
T Consensus        71 ------~~~~k~~~~f~t~g~~~~----~~~~~l~~~l~~~g~~~~~~  108 (150)
T PRK06242         71 ------PVSGKKAFIFSTSGLPFL----KYHKALKKKLKEKGFEIVGE  108 (150)
T ss_pred             ------hhcCCeEEEEECCCCCcc----hHHHHHHHHHHHCCCEEEEE
Confidence                  247899999998655443    23789999999999988765

>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme

Probab=99.35  E-value=3.1e-12  Score=124.82  Aligned_cols=69  Identities=19%  Similarity=0.265  Sum_probs=59.6

Q ss_pred             ceEEEeecCCCCCCcc-HHHHHHHHHhcCCcEEEEcCCCC---HHHHhhcCC-CceEEEEeeCCCHHHHHhhcCC
Q 038595          455 RHCALSLVGEPIMYPE-INTLVDELHRRRISTFLVTNAQF---PDKIKLLKP-VTQLYVSVDAATKDSLKAIDRP  524 (534)
Q Consensus       455 ~h~alSl~GEPlLyp~-L~elI~~lk~~gi~~~LvTNGtl---pe~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP  524 (534)
                      +.+.|++ |||||+|+ +.++++++++.|+.+.++|||++   ++.++++++ ++.+.||+|+.+++.|+++++.
T Consensus        67 ~~I~~~G-GEPll~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll~~~d~v~isl~~~~~~~~~~~~g~  140 (235)
T TIGR02493        67 GGVTFSG-GEPLLQPEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELLEYTDLVLLDIKHFNPEKYKKLTGV  140 (235)
T ss_pred             CeEEEeC-cccccCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHCC
Confidence            3567787 99999998 56999999999999999999964   566776665 7889999999999999999875

An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.

>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed

Probab=99.35  E-value=3.3e-12  Score=131.28  Aligned_cols=119  Identities=20%  Similarity=0.308  Sum_probs=87.2

Q ss_pred             eeeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeecccccccccccc
Q 038595          348 RCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAI  427 (534)
Q Consensus       348 ~c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~  427 (534)
                      +.+.+.++..||.+|.||........  ......-++++|...+-.     +..+ |                       
T Consensus        17 ~~l~i~vT~~Cnl~C~yC~~~~~~~~--~~~~~~ls~eei~~~i~~-----~~~~-g-----------------------   65 (331)
T PRK00164         17 TYLRISVTDRCNFRCTYCMPEGYLPF--LPKEELLSLEEIERLVRA-----FVAL-G-----------------------   65 (331)
T ss_pred             CeEEEEEcCCcCcCCCCCCCccCCCC--CCccccCCHHHHHHHHHH-----HHHC-C-----------------------
Confidence            35667778899999999987642111  112234566676654321     1111 2                       


Q ss_pred             ccCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-C-CcEEEEcCCCC-HHHHhhcCC--
Q 038595          428 DKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-R-ISTFLVTNAQF-PDKIKLLKP--  502 (534)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-g-i~~~LvTNGtl-pe~l~~L~~--  502 (534)
                                                ++.+.|++ |||+++|++.++|+.+++. + ..+.|.|||++ ++.++.|..  
T Consensus        66 --------------------------i~~I~~tG-GEPll~~~l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~ag  118 (331)
T PRK00164         66 --------------------------VRKVRLTG-GEPLLRKDLEDIIAALAALPGIRDLALTTNGYLLARRAAALKDAG  118 (331)
T ss_pred             --------------------------CCEEEEEC-CCCcCccCHHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcC
Confidence                                      35678887 9999999999999999987 3 47999999997 456666654  


Q ss_pred             CceEEEEeeCCCHHHHHhhcCC
Q 038595          503 VTQLYVSVDAATKDSLKAIDRP  524 (534)
Q Consensus       503 v~qlyvSlDA~~~e~y~~I~rP  524 (534)
                      ++.+.||||+.+++.|++|++.
T Consensus       119 l~~i~ISlds~~~e~~~~i~~~  140 (331)
T PRK00164        119 LDRVNVSLDSLDPERFKAITGR  140 (331)
T ss_pred             CCEEEEEeccCCHHHhccCCCC
Confidence            7899999999999999999985

>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB

Probab=99.31  E-value=9.9e-12  Score=134.00  Aligned_cols=119  Identities=18%  Similarity=0.280  Sum_probs=89.9

Q ss_pred             eeeecccccccccccccccCCCC----CCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccc
Q 038595          349 CMEATPSLACANKCVFCWRHHTN----PVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVS  424 (534)
Q Consensus       349 c~~~~p~~~C~~~C~~C~r~~~~----~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~  424 (534)
                      .|-..++..||.+|.||++....    ..+.  ....-.|+++++.+.+.    ...+   |+                 
T Consensus        25 r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~--~~~~Ltpee~~~~i~~v----~~~~---~~-----------------   78 (442)
T TIGR01290        25 RMHLAVAPACNIQCNYCNRKYDCANESRPGV--VSELLTPEQALRKARQV----AAEI---PQ-----------------   78 (442)
T ss_pred             EEEEecCCCCCCcCcCCCCCCCCCcCCCCcc--ccccCCHHHHHHHHHHH----HHhc---CC-----------------
Confidence            46677788999999999986421    1110  11235788888766542    1111   22                 


Q ss_pred             cccccCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCcc-HHHHHHHHHhc--CCcEEEEcCCCC-HHHHhhc
Q 038595          425 SAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPE-INTLVDELHRR--RISTFLVTNAQF-PDKIKLL  500 (534)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~-L~elI~~lk~~--gi~~~LvTNGtl-pe~l~~L  500 (534)
                                                   ++.+.|++.||||++|+ +.++++.+++.  |+.+.|.|||.+ |+.+++|
T Consensus        79 -----------------------------~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L  129 (442)
T TIGR01290        79 -----------------------------LSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRL  129 (442)
T ss_pred             -----------------------------CCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHH
Confidence                                         35588999999999985 77888888876  899999999986 8999998


Q ss_pred             CC--CceEEEEeeCCCHHHHHhhc
Q 038595          501 KP--VTQLYVSVDAATKDSLKAID  522 (534)
Q Consensus       501 ~~--v~qlyvSlDA~~~e~y~~I~  522 (534)
                      ++  ++.+.||||+.|++.|++|.
T Consensus       130 ~~~gvd~V~islka~d~e~~~~Iy  153 (442)
T TIGR01290       130 VDLGVGHVTITINAIDPAVGEKIY  153 (442)
T ss_pred             HHCCCCeEEEeccCCCHHHHhhcc
Confidence            76  89999999999999999884

This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.

>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional

Probab=99.29  E-value=5.8e-12  Score=124.30  Aligned_cols=68  Identities=18%  Similarity=0.147  Sum_probs=59.6

Q ss_pred             eEEEeecCCCCCCccH-HHHHHHHHhcCCcEEEEcCCCC---HHHHhhcCC-CceEEEEeeCCCHHHHHhhcCC
Q 038595          456 HCALSLVGEPIMYPEI-NTLVDELHRRRISTFLVTNAQF---PDKIKLLKP-VTQLYVSVDAATKDSLKAIDRP  524 (534)
Q Consensus       456 h~alSl~GEPlLyp~L-~elI~~lk~~gi~~~LvTNGtl---pe~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP  524 (534)
                      .++||+ |||||++++ .++++.+|+.|+.+.+.|||++   ++.++++++ ++.+.||+|+.+++.|+++.+.
T Consensus        73 ~V~~sG-GEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~~~~~~~~~ll~~~d~v~islk~~~~e~~~~~~g~  145 (246)
T PRK11145         73 GVTASG-GEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDLKQMNDEIHQNLVGV  145 (246)
T ss_pred             eEEEeC-ccHhcCHHHHHHHHHHHHHcCCCEEEECCCCCCcchHHHHHHHHhCCEEEECCCcCChhhcccccCC
Confidence            467776 999999984 6999999999999999999996   477887776 7889999999999999999763

>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial

Probab=99.29  E-value=1.6e-11  Score=126.64  Aligned_cols=70  Identities=29%  Similarity=0.390  Sum_probs=60.6

Q ss_pred             CceEEEeecCCCCCCccHHHHHHHHHh-cCC-cEEEEcCCCC-HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCC
Q 038595          454 PRHCALSLVGEPIMYPEINTLVDELHR-RRI-STFLVTNAQF-PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRP  524 (534)
Q Consensus       454 ~~h~alSl~GEPlLyp~L~elI~~lk~-~gi-~~~LvTNGtl-pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP  524 (534)
                      ++++.|++ |||||+|++.++|+.+++ .|+ .+.+.|||++ ++.++.|..  ++.+.||+|+.+++.|++|.++
T Consensus        60 v~~V~ltG-GEPll~~~l~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~  134 (334)
T TIGR02666        60 VRKVRLTG-GEPLLRKDLVELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRR  134 (334)
T ss_pred             CCEEEEEC-ccccccCCHHHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCC
Confidence            35677776 999999999999999998 488 7999999997 566777764  8999999999999999999863

The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.

>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE

Probab=99.24  E-value=2.5e-11  Score=120.74  Aligned_cols=59  Identities=20%  Similarity=0.273  Sum_probs=50.5

Q ss_pred             CceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCCCceEEEEeeCCCH
Q 038595          454 PRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATK  515 (534)
Q Consensus       454 ~~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~v~qlyvSlDA~~~  515 (534)
                      ++++.|++ |||||||+|.+|++.+++.|+.+.|.|||+++..  .|..++++.||+++++.
T Consensus        73 ~~~V~lTG-GEPll~~~l~~li~~l~~~g~~v~leTNGtl~~~--~l~~~d~v~vs~K~~~s  131 (238)
T TIGR03365        73 PLHVSLSG-GNPALQKPLGELIDLGKAKGYRFALETQGSVWQD--WFRDLDDLTLSPKPPSS  131 (238)
T ss_pred             CCeEEEeC-CchhhhHhHHHHHHHHHHCCCCEEEECCCCCcHH--HHhhCCEEEEeCCCCCC
Confidence            45678888 9999999999999999999999999999999764  23346789999998874

This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.

>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation

Probab=99.23  E-value=2.4e-11  Score=108.12  Aligned_cols=120  Identities=26%  Similarity=0.457  Sum_probs=87.2

Q ss_pred             cccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCC
Q 038595          353 TPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIP  432 (534)
Q Consensus       353 ~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (534)
                      .++..|+++|.||+.+..   ...+.+....|++|++.+.+.+     ...|.                           
T Consensus         2 ~~~~~C~~~C~fC~~~~~---~~~~~~~~~~~e~i~~~~~~~~-----~~~~~---------------------------   46 (166)
T PF04055_consen    2 ETTRGCNLNCSFCYYPRS---RRKNKPREMSPEEILEEIKELK-----QDKGV---------------------------   46 (166)
T ss_dssp             EEESEESS--TTTSTTTT---CCTCGCEECHHHHHHHHHHHHH-----HHTTH---------------------------
T ss_pred             EECcCcCccCCCCCCCcc---CCCcccccCCHHHHHHHHHHHh-----HhcCC---------------------------
Confidence            577889999999999875   2344556677888888776531     11121                           


Q ss_pred             CCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc---CCcEEEEcCCCC--HHHHhhcCC--Cce
Q 038595          433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR---RISTFLVTNAQF--PDKIKLLKP--VTQ  505 (534)
Q Consensus       433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~---gi~~~LvTNGtl--pe~l~~L~~--v~q  505 (534)
                                            ..+ +...|||+++|++.+++..+++.   ++.+.+.|||++  ++.++.|.+  ++.
T Consensus        47 ----------------------~~i-~~~~gep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~~~~  103 (166)
T PF04055_consen   47 ----------------------KEI-FFGGGEPTLHPDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKLGVDR  103 (166)
T ss_dssp             ----------------------EEE-EEESSTGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTTCSE
T ss_pred             ----------------------cEE-EEeecCCCcchhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhcCccE
Confidence                                  112 23479999999999999999886   899999999999  577777776  699


Q ss_pred             EEEEeeCCCHH-HHHhhcCCCCCchhhhc
Q 038595          506 LYVSVDAATKD-SLKAIDRPLFGDFWERF  533 (534)
Q Consensus       506 lyvSlDA~~~e-~y~~I~rP~~~~~w~~~  533 (534)
                      +.+|+++.+++ ..+.+++   +..|+++
T Consensus       104 i~~~l~s~~~~~~~~~~~~---~~~~~~~  129 (166)
T PF04055_consen  104 IRISLESLDEESVLRIINR---GKSFERV  129 (166)
T ss_dssp             EEEEEBSSSHHHHHHHHSS---TSHHHHH
T ss_pred             EecccccCCHHHhhhhhcC---CCCHHHH
Confidence            99999999999 5555543   4456654

Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....

>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV

Probab=99.22  E-value=1.1e-10  Score=112.84  Aligned_cols=119  Identities=13%  Similarity=0.018  Sum_probs=93.0

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhC-CCceEEECCCCCCc--------------------cCcCCCCeEEEEeccCCC
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSN-DLLFDLVDPQTYEP--------------------EDLSKEALVLIVASSWED  127 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~-Gl~v~V~dL~d~d~--------------------~dL~~~~lvIfv~STYg~  127 (534)
                      +|+|+|.|++|||+++|+.+++.+++. |.+++++++.+..+                    +++.+++.+||++|||. 
T Consensus         2 kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty~-   80 (197)
T TIGR01755         2 KVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTRF-   80 (197)
T ss_pred             eEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEecccc-
Confidence            589999999999999999999999875 99999999876432                    44567899999999998 


Q ss_pred             CCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595          128 GKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL  194 (534)
Q Consensus       128 G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~  194 (534)
                      |.+|..+..|++++.....     ...|.|+.+++|+.+....+ ....+...+-..|..+|...+-
T Consensus        81 g~~~~~lk~fld~~~~~~~-----~~~l~gK~~~~f~s~g~~~G-g~~~~l~~l~~~l~~~Gm~vv~  141 (197)
T TIGR01755        81 GNMASQMRNFLDQTGGLWA-----SGALVGKVGSVFTSTGTQHG-GQESTILSTWTTLLHHGMIIVP  141 (197)
T ss_pred             cCccHHHHHHHHhcccccc-----ccccCCCEEEEEEECCCCCC-CHHHHHHHHHHHHHHCCCEEeC
Confidence            7677779999998865421     23688999999998654433 3445566677777888986654

This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.

>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional

Probab=99.19  E-value=1.2e-10  Score=121.77  Aligned_cols=119  Identities=18%  Similarity=0.162  Sum_probs=88.6

Q ss_pred             eeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccc
Q 038595          349 CMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAID  428 (534)
Q Consensus       349 c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~  428 (534)
                      .+-+++...||.+|+||..+...     +. .--.+.||++.++...+    ..   +.                     
T Consensus        98 t~cvSsq~GC~l~C~fC~tg~~g-----~~-r~l~~~EI~~qi~~~~~----~~---~~---------------------  143 (336)
T PRK14470         98 VVCLSSQAGCALGCAFCATGKLG-----LD-RSLRSWEIVAQLLAVRA----DS---ER---------------------  143 (336)
T ss_pred             EEEEeCCCCcCCCCccccCCCCC-----CC-CCCCHHHHHHHHHHHHH----hc---CC---------------------
Confidence            34456677799999999986422     11 11367799988774321    11   12                     


Q ss_pred             cCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCC-ccHHHHHHHHHhc------CCcEEEEcCCCCHHHHhhcC
Q 038595          429 KQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMY-PEINTLVDELHRR------RISTFLVTNAQFPDKIKLLK  501 (534)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLy-p~L~elI~~lk~~------gi~~~LvTNGtlpe~l~~L~  501 (534)
                                              .++++.|+++|||||+ +.+.++++.++..      +..+.+.|||..|.+.+.+.
T Consensus       144 ------------------------~i~nIvfmGmGEPllN~d~v~~~i~~l~~~~~~~~~~~~ItVsTnG~~p~i~~l~~  199 (336)
T PRK14470        144 ------------------------PITGVVFMGQGEPFLNYDEVLRAAYALCDPAGARIDGRRISISTAGVVPMIRRYTA  199 (336)
T ss_pred             ------------------------CCCEEEEEecCccccCHHHHHHHHHHHhCccccccCCCceEEEecCChHHHHHHHh
Confidence                                    2578889999999996 6799999999863      56799999999997665444


Q ss_pred             C--CceEEEEeeCCCHHHHHhhcCCC
Q 038595          502 P--VTQLYVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       502 ~--v~qlyvSlDA~~~e~y~~I~rP~  525 (534)
                      .  ...|.|||+|+|++.|++|.+|.
T Consensus       200 ~~~~~~LaiSLhA~~~e~r~~I~p~~  225 (336)
T PRK14470        200 EGHKFRLCISLNAAIPWKRRALMPIE  225 (336)
T ss_pred             cCCCceEEEecCCCCHHHHHHhcCcc
Confidence            2  36799999999999999999763

>PRK11104 hemG protoporphyrinogen oxidase; Provisional

Probab=99.19  E-value=6.9e-11  Score=112.68  Aligned_cols=86  Identities=26%  Similarity=0.267  Sum_probs=75.9

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      +++|+|+|.||||+++|+.|++.|.. |+.++++++++.+..++.+++.+||++|||. |.++..+..|++.+.      
T Consensus         2 kilIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~~l~~yD~vIlGspi~~-G~~~~~~~~fl~~~~------   73 (177)
T PRK11104          2 KTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHRIEEPDLSDYDRVVIGASIRY-GHFHSALYKFVKKHA------   73 (177)
T ss_pred             cEEEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhcCccCHHHCCEEEEECcccc-CCcCHHHHHHHHHHH------
Confidence            48999999999999999999999998 9999999999987778888999999999997 667777888876543      


Q ss_pred             cccccCCCCCeEEEEEec
Q 038595          149 RVGSLLLSNCKFAVFGVG  166 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLG  166 (534)
                          ..|+++++++|++|
T Consensus        74 ----~~l~~K~v~~F~v~   87 (177)
T PRK11104         74 ----TQLNQMPSAFFSVN   87 (177)
T ss_pred             ----HHhCCCeEEEEEec
Confidence                25799999999988

>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis

Probab=99.16  E-value=1.1e-10  Score=106.16  Aligned_cols=102  Identities=18%  Similarity=0.369  Sum_probs=67.1

Q ss_pred             EEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCC----CchHHHHHHHHHHhhcCc
Q 038595           72 LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGK----PPEAAKFFMNWIDESAND  147 (534)
Q Consensus        72 I~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~----pPdna~~Fle~L~e~~~D  147 (534)
                      |+|.|.||||++|+++|...+.     ..-+.+...+. ++.-..-+|+++|||+.|.    .|+....|++.-+.    
T Consensus         1 I~Y~S~tGNt~rFv~kL~~~~~-----~~~i~~~~~~~-~~~~~ep~vLitpTy~~G~~~~~vp~~v~~FL~~~~N----   70 (122)
T PF07972_consen    1 IYYSSLTGNTRRFVEKLGLYAP-----AIRIPIREISP-DLEVDEPFVLITPTYGFGENDGGVPKQVIRFLENPDN----   70 (122)
T ss_dssp             EEE--SSSHHHHHHHHH-S--S-----EEEE-SSCTTS-TS--SS-EEEEEE-BTTTBSSTSS-HHHHHHHHSHHH----
T ss_pred             CEEECCCcCHHHHHHHHcccch-----hcccccccccc-cccCCCCEEEEecccCCCCCCCCCCHHHHHHHHHHHH----
Confidence            7999999999999999987543     22333333332 2334567999999999999    89888888775443    


Q ss_pred             ccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595          148 FRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL  194 (534)
Q Consensus       148 FRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~  194 (534)
                              +..-.+|+|+||++|++.||.+|+.+.+.   .+...++
T Consensus        71 --------~~~l~GVigSGNrNfg~~f~~aa~~ia~k---y~VPll~  106 (122)
T PF07972_consen   71 --------RKLLRGVIGSGNRNFGDNFCLAADKIAEK---YGVPLLY  106 (122)
T ss_dssp             --------GGGEEEEEEEE-GGGGGGTTHHHHHHHHH---HT--EEE
T ss_pred             --------HhhheeEEecCCcHHHHHHHHHHHHHHHH---cCCCEEE
Confidence                    23467799999999999999999999877   5554443

The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.

>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional

Probab=99.14  E-value=3.8e-10  Score=108.91  Aligned_cols=119  Identities=12%  Similarity=0.039  Sum_probs=91.4

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhh-CCCceEEECCCCCC--------------------ccCcCCCCeEEEEeccCCC
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTS-NDLLFDLVDPQTYE--------------------PEDLSKEALVLIVASSWED  127 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~-~Gl~v~V~dL~d~d--------------------~~dL~~~~lvIfv~STYg~  127 (534)
                      +|+|+|+|.+|||+++|+.+++.+.+ .|.+++++++.+..                    .+++...+.+||++|||. 
T Consensus         3 kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsPty~-   81 (200)
T PRK03767          3 KVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPTRF-   81 (200)
T ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEecccC-
Confidence            59999999999999999999999998 99999999986432                    345567899999999996 


Q ss_pred             CCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595          128 GKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL  194 (534)
Q Consensus       128 G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~  194 (534)
                      |.+|..++.|++++.....     ...|+++.+++|+......+ .--...+.+-..|..+|...+-
T Consensus        82 g~~~~~lk~fld~~~~~~~-----~~~l~gK~~~~f~s~g~~~G-g~~~~l~~l~~~~~~~gm~vv~  142 (200)
T PRK03767         82 GNMAGQMRNFLDQTGGLWA-----KGALVGKVGSVFTSTGTQHG-GQETTITSTHTTLLHHGMVIVG  142 (200)
T ss_pred             CCchHHHHHHHHHhccccc-----cCCccCCEEEEEEeCCCCCC-ChHHHHHHHHHHHHHcCCEEeC
Confidence            7788889999998754321     23688999999998544322 1224455566666788886654

>PRK13758 anaerobic sulfatase-maturase; Provisional

Probab=99.13  E-value=2e-10  Score=119.66  Aligned_cols=76  Identities=18%  Similarity=0.168  Sum_probs=55.4

Q ss_pred             eEEEeecCCCCCCc--cHHHHHHHHHhcC---C--cEEEEcCCCC--HHHHhhcCC-CceEEEEeeCCCHHHHHhhcCCC
Q 038595          456 HCALSLVGEPIMYP--EINTLVDELHRRR---I--STFLVTNAQF--PDKIKLLKP-VTQLYVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       456 h~alSl~GEPlLyp--~L~elI~~lk~~g---i--~~~LvTNGtl--pe~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP~  525 (534)
                      ++.+++ |||||+|  .+.++++++++.|   +  .+.|+|||++  ++.++.|.+ ...+.||||++ ++.|.++++-.
T Consensus        60 ~i~~~G-GEPll~~~~~~~~~~~~~~~~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~~v~iSlDg~-~~~hd~~R~~~  137 (370)
T PRK13758         60 SFAFQG-GEPTLAGLEFFEELMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENKFLVGLSMDGP-KEIHNLNRKDC  137 (370)
T ss_pred             EEEEEC-CccccCChHHHHHHHHHHHHhccCCCeEEEEEEecCEecCHHHHHHHHHcCceEEEeecCC-HHHhccccCCC
Confidence            455554 9999996  4679999999875   3  3579999997  677777764 24899999998 67787776421


Q ss_pred             -CCchhhhc
Q 038595          526 -FGDFWERF  533 (534)
Q Consensus       526 -~~~~w~~~  533 (534)
                       .++.|+++
T Consensus       138 ~g~~~f~~v  146 (370)
T PRK13758        138 CGLDTFSKV  146 (370)
T ss_pred             CCCccHHHH
Confidence             24566664

>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A

Probab=99.11  E-value=5e-11  Score=106.73  Aligned_cols=80  Identities=19%  Similarity=0.270  Sum_probs=51.0

Q ss_pred             CceEEEeecCCCCC---CccHHHHHHHHHhcCC-cEEEEcCCCCHHHHhh--cCC-CceEEEEeeCCCHHHHHhhcCCCC
Q 038595          454 PRHCALSLVGEPIM---YPEINTLVDELHRRRI-STFLVTNAQFPDKIKL--LKP-VTQLYVSVDAATKDSLKAIDRPLF  526 (534)
Q Consensus       454 ~~h~alSl~GEPlL---yp~L~elI~~lk~~gi-~~~LvTNGtlpe~l~~--L~~-v~qlyvSlDA~~~e~y~~I~rP~~  526 (534)
                      +..+.|++ |||+|   ++.|.++++.+++.+. .+.+.|||+..+.+..  +.. ++.+.||||.+..+.+.++.+...
T Consensus        53 ~~~i~l~G-GEPll~~~~~~l~~i~~~~k~~~~~~~~~~tng~~~~~~~~~~~~~~~~~~~vsvd~~~~~~~~~~~~~~~  131 (139)
T PF13353_consen   53 IKGIVLTG-GEPLLHENYDELLEILKYIKEKFPKKIIILTNGYTLDELLDELIEELLDEIDVSVDGPFDENKEDRHLRGR  131 (139)
T ss_dssp             CCEEEEEC-STGGGHHSHHHHHHHHHHHHHTT-SEEEEEETT--HHHHHHHHHHHHHHTESEEEE---SSHHHHH--HHC
T ss_pred             ceEEEEcC-CCeeeeccHhHHHHHHHHHHHhCCCCeEEEECCCchhHHHhHHHHhccCccEEEEEEechhhccccccCcc
Confidence            34566676 99999   7899999999999988 7999999998544321  222 456778999999988888777667


Q ss_pred             CchhhhcC
Q 038595          527 GDFWERFL  534 (534)
Q Consensus       527 ~~~w~~~~  534 (534)
                      +.++++++
T Consensus       132 gs~~q~i~  139 (139)
T PF13353_consen  132 GSSNQRII  139 (139)
T ss_dssp             SS------
T ss_pred             CcccccCC
Confidence            77888764

>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]

Probab=99.08  E-value=2e-10  Score=119.29  Aligned_cols=68  Identities=25%  Similarity=0.428  Sum_probs=59.9

Q ss_pred             CCCCCCccHHHHHHHHHhcCCc-EEEEcCCCC-HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCCCchhhhc
Q 038595          463 GEPIMYPEINTLVDELHRRRIS-TFLVTNAQF-PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLFGDFWERF  533 (534)
Q Consensus       463 GEPlLyp~L~elI~~lk~~gi~-~~LvTNGtl-pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~~~~w~~~  533 (534)
                      |||||-++|.++|+.+++.++. +.+.|||.+ +...+.|..  +++|.||||+.|++.|++|.+   .+.++++
T Consensus        68 GEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~---~~~~~~V  139 (322)
T COG2896          68 GEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITG---RDRLDRV  139 (322)
T ss_pred             CCchhhcCHHHHHHHHhhcccceEEEecchhhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhC---CCcHHHH
Confidence            9999999999999999998764 999999986 677778875  999999999999999999997   3446665

>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A

Probab=99.06  E-value=9e-11  Score=102.95  Aligned_cols=39  Identities=28%  Similarity=0.560  Sum_probs=29.7

Q ss_pred             ceEEEeecCCCCCC---ccHHHHHHHHHhcC--CcEEEEcCCCCH
Q 038595          455 RHCALSLVGEPIMY---PEINTLVDELHRRR--ISTFLVTNAQFP  494 (534)
Q Consensus       455 ~h~alSl~GEPlLy---p~L~elI~~lk~~g--i~~~LvTNGtlp  494 (534)
                      .++.|+| |||+||   +.|.++++.+++++  +.+.+.|||+++
T Consensus        49 ~~v~~~G-GEPll~~~~~~l~~~i~~~~~~~~~~~i~i~TNg~~~   92 (119)
T PF13394_consen   49 STVVFTG-GEPLLYLNPEDLIELIEYLKERGPEIKIRIETNGTLP   92 (119)
T ss_dssp             -EEEEES-SSGGGSTTHHHHHHHHCTSTT-----EEEEEE-STTH
T ss_pred             EEEEEEC-CCCccccCHHHHHHHHHHHHhhCCCceEEEEeCCeec
Confidence            4566777 999987   57889999999998  999999999996

>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]

Probab=99.06  E-value=1.3e-09  Score=100.42  Aligned_cols=129  Identities=12%  Similarity=0.188  Sum_probs=88.7

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCC----CCchHHHHHHHHHHhh
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDG----KPPEAAKFFMNWIDES  144 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G----~pPdna~~Fle~L~e~  144 (534)
                      .+.|+|.|.||||.+|+++|.  +.+..  +.+..  .-  +.+.-.+-+|+++|||+.|    ..|.....|+   .+.
T Consensus         2 ~~~v~f~S~SgNt~RFv~kL~--~~~~~--I~~~~--~~--~~~~v~epyvlitpTyg~G~~~~~Vp~~vi~FL---n~~   70 (141)
T COG1780           2 MLLVYFSSLSGNTHRFVEKLG--LPAVR--IPLNR--EE--DPIEVDEPYVLITPTYGGGGTVGAVPKQVIRFL---NNE   70 (141)
T ss_pred             ceEEEEEecCccHHHHHHHhC--CCcee--ccccc--cc--CCccCCCCeEEEeccccCCCccCccCHHHHHHh---ccc
Confidence            378999999999999999998  22111  11111  11  1244567899999999999    8888666664   322


Q ss_pred             cCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHH
Q 038595          145 ANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILK  222 (534)
Q Consensus       145 ~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~  222 (534)
                               .-+.+.-+|+|.||++|++.||.+|+.+.+.   ++..-++..-+.-... |. +.+..|..++++...
T Consensus        71 ---------~Nr~~~rGViaSGN~NfG~~f~~Ag~~iS~k---~~vPlLy~FEL~GT~~-Dv-~~v~~~v~~~~~~~~  134 (141)
T COG1780          71 ---------HNRALCRGVIASGNRNFGDNFALAGDVISAK---CGVPLLYRFELLGTAE-DV-AAVRKGVTEFWKRAP  134 (141)
T ss_pred             ---------cchhheEEEEecCCccHHHHHHHHHHHHHHH---hCCCEEEEEeccCCHH-HH-HHHHHHHHHHHHhCC
Confidence                     2245677899999999999999999999876   6766666543332221 22 456777777776543

>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional

Probab=99.05  E-value=7.7e-10  Score=115.63  Aligned_cols=68  Identities=22%  Similarity=0.229  Sum_probs=57.2

Q ss_pred             CceEEEeecCCCCCCc-cHHHHHHHHHh-----cCC-cEEEEcCCCCHHHHhhcCC--Cc-eEEEEeeCCCHHHHHhhc
Q 038595          454 PRHCALSLVGEPIMYP-EINTLVDELHR-----RRI-STFLVTNAQFPDKIKLLKP--VT-QLYVSVDAATKDSLKAID  522 (534)
Q Consensus       454 ~~h~alSl~GEPlLyp-~L~elI~~lk~-----~gi-~~~LvTNGtlpe~l~~L~~--v~-qlyvSlDA~~~e~y~~I~  522 (534)
                      ++++.|++.|||+|++ .+.++|+++++     .|. .+.+.|||. ++.+++|..  ++ .|.|||||++++.++++.
T Consensus       149 v~~Vvf~GmGEPLln~d~v~~~i~~l~~~~~~~~g~~~itisTnG~-~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~  226 (343)
T PRK14469        149 VGNVVYMGMGEPLLNYENVIKSIKILNHKKMKNIGIRRITISTVGI-PEKIIQLAEEGLDVKLALSLHAPTNFKRDQIV  226 (343)
T ss_pred             cCeEEEEccChhhhhHHHHHHHHHHHhchhcccCCCCeEEEECCCC-hHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhc
Confidence            5678999999999987 69999999964     244 689999997 777777765  56 699999999999999985

>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]

Probab=99.03  E-value=1.7e-09  Score=114.57  Aligned_cols=119  Identities=14%  Similarity=0.231  Sum_probs=101.5

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccC----cCCCCeEEEEeccCCCCCCchHHHHHHHHHHhh
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPED----LSKEALVLIVASSWEDGKPPEAAKFFMNWIDES  144 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d----L~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~  144 (534)
                      +|.|+|.|++|+|+.+|+.|++.|.+.|+.|.++++.+.++++    +.+.+.+|+++||++.+.+|. +..++..+...
T Consensus       248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~~~~~~p~-i~~~l~~v~~~  326 (388)
T COG0426         248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTINGGAHPP-IQTALGYVLAL  326 (388)
T ss_pred             eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCcccCCCCch-HHHHHHHHHhc
Confidence            5999999999999999999999999999999999999988766    456789999999999887775 77888887754


Q ss_pred             cCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCC
Q 038595          145 ANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVD  202 (534)
Q Consensus       145 ~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~  202 (534)
                               ..+++..+|||+  ..|+   ..+.+.+.+.|+.+|.+..++..++-..
T Consensus       327 ---------~~~~k~~~vfgS--~GW~---g~av~~i~~~l~~~g~~~~~~~i~vk~~  370 (388)
T COG0426         327 ---------APKNKLAGVFGS--YGWS---GEAVDLIEEKLKDLGFEFGFDGIEVKFR  370 (388)
T ss_pred             ---------cCcCceEEEEec--cCCC---CcchHHHHHHHHhcCcEEeccceEEEec
Confidence                     346677999986  3565   7889999999999999998886666554

>cd01335 Radical_SAM Radical SAM superfamily

Probab=99.00  E-value=2.2e-09  Score=97.68  Aligned_cols=62  Identities=27%  Similarity=0.475  Sum_probs=57.4

Q ss_pred             ecCCCCCCccHHHHHHHHHhc--CCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhc
Q 038595          461 LVGEPIMYPEINTLVDELHRR--RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAID  522 (534)
Q Consensus       461 l~GEPlLyp~L~elI~~lk~~--gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~  522 (534)
                      ..|||++++++.++++.+++.  ++++.+.|||..  ++.++.|.+  +..+.+|+|+.+++.+++++
T Consensus        51 ~ggep~~~~~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~  118 (204)
T cd01335          51 TGGEPLLYPELAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIR  118 (204)
T ss_pred             eCCcCCccHhHHHHHHHHHhhCCCceEEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHh
Confidence            459999999999999999998  899999999997  888888876  79999999999999999997

Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o

>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10

Probab=99.00  E-value=1.5e-09  Score=116.07  Aligned_cols=69  Identities=22%  Similarity=0.310  Sum_probs=62.8

Q ss_pred             ceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEE-cCCC-C--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcC
Q 038595          455 RHCALSLVGEPIMYPEINTLVDELHRRRISTFLV-TNAQ-F--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDR  523 (534)
Q Consensus       455 ~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~Lv-TNGt-l--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~r  523 (534)
                      ..++||+.|||++||++.++++.+|+.|+.+.+. |||+ +  ++.+++|.+  ++.+++|||+.|++.++++.+
T Consensus        75 ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G  149 (404)
T TIGR03278        75 TKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMK  149 (404)
T ss_pred             CEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhC
Confidence            3578999999999999999999999999999996 9987 3  788999887  899999999999999999765

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.

>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional

Probab=98.99  E-value=2.9e-09  Score=112.69  Aligned_cols=71  Identities=21%  Similarity=0.277  Sum_probs=58.4

Q ss_pred             CCceEEEeecCCCCCCc-cHHHHHHHHHhcC----C---cEEEEcCCCCHHHHhhcCC--Cc-eEEEEeeCCCHHHHHhh
Q 038595          453 TPRHCALSLVGEPIMYP-EINTLVDELHRRR----I---STFLVTNAQFPDKIKLLKP--VT-QLYVSVDAATKDSLKAI  521 (534)
Q Consensus       453 ~~~h~alSl~GEPlLyp-~L~elI~~lk~~g----i---~~~LvTNGtlpe~l~~L~~--v~-qlyvSlDA~~~e~y~~I  521 (534)
                      .++++.|.+.|||++++ .+.++|+.+++.+    +   .+.+.|||-.| .+++|..  ++ .|.|||||++++.|++|
T Consensus       173 ~v~nIvfmGmGEPLln~d~v~~~i~~l~~~~~~~~is~r~ItisT~Gl~~-~i~~L~~~gl~~~LaiSL~a~~~e~r~~i  251 (368)
T PRK14456        173 GITNIVFMGMGEPLLNTDNVFEAVLTLSTRKYRFSISQRKITISTVGITP-EIDRLATSGLKTKLAVSLHSADQEKRERL  251 (368)
T ss_pred             CccEEEEeCcCccccCHHHHHHHHHHHhccccccCcCcCeeEEECCCChH-HHHHHHHcCCCceEEEEecCCCHHHHHHh
Confidence            36788999999999998 5999999999752    3   47899999555 4677764  54 79999999999999999


Q ss_pred             cCC
Q 038595          522 DRP  524 (534)
Q Consensus       522 ~rP  524 (534)
                      ..|
T Consensus       252 ~P~  254 (368)
T PRK14456        252 MPQ  254 (368)
T ss_pred             ccc
Confidence            754

>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional

Probab=98.97  E-value=5.5e-09  Score=110.00  Aligned_cols=70  Identities=19%  Similarity=0.215  Sum_probs=59.8

Q ss_pred             CceEEEeecCCCCCCc-cHHHHHHHHHhc-CC-----cEEEEcCCCCHHHHhhcCC--CceEEEEeeCCCHHHHHhhcCC
Q 038595          454 PRHCALSLVGEPIMYP-EINTLVDELHRR-RI-----STFLVTNAQFPDKIKLLKP--VTQLYVSVDAATKDSLKAIDRP  524 (534)
Q Consensus       454 ~~h~alSl~GEPlLyp-~L~elI~~lk~~-gi-----~~~LvTNGtlpe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP  524 (534)
                      ++++.++++||||+++ .+.++++.+++. |+     .+.|.|||. ++.++.|..  +..|.|||||+|++.|++|.++
T Consensus       156 i~nIvfmGmGEPLln~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G~-~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~  234 (354)
T PRK14460        156 LRNLVFMGMGEPLLNLDEVMRSLRTLNNEKGLNFSPRRITVSTCGI-EKGLRELGESGLAFLAVSLHAPNQELRERIMPK  234 (354)
T ss_pred             eeEEEEecCCcccCCHHHHHHHHHHHhhhhccCCCCCeEEEECCCC-hHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCc
Confidence            6889999999999987 588999999864 66     499999998 667777765  5589999999999999999865

>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional

Probab=98.97  E-value=2.4e-09  Score=112.33  Aligned_cols=72  Identities=21%  Similarity=0.279  Sum_probs=56.1

Q ss_pred             CCceEEEeecCCCCCCc-cHHHHHHHH-HhcCC-----cEEEEcCCCCHHHHhhcCC--Cc-eEEEEeeCCCHHHHHhhc
Q 038595          453 TPRHCALSLVGEPIMYP-EINTLVDEL-HRRRI-----STFLVTNAQFPDKIKLLKP--VT-QLYVSVDAATKDSLKAID  522 (534)
Q Consensus       453 ~~~h~alSl~GEPlLyp-~L~elI~~l-k~~gi-----~~~LvTNGtlpe~l~~L~~--v~-qlyvSlDA~~~e~y~~I~  522 (534)
                      .++++.|++.|||++++ .+.++++.+ +..|+     .+.+.|||. +..+++|.+  +. .|.|||||+|++.|++|.
T Consensus       143 ~i~~Vvf~GmGEPlln~~~v~~~i~~l~~~~g~~l~~r~itvST~G~-~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~  221 (343)
T PRK14468        143 EIRNVVLMGMGEPLLNYENVLKAARIMLHPQALAMSPRRVTLSTVGI-PKGIRRLAEEDLGVRLALSLHAPDEETRQRII  221 (343)
T ss_pred             CccEEEEeccCccccCHHHHHHHHHHhcccccccccCceEEEECCCC-hHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhc
Confidence            36789999999999976 777888777 44454     488999995 455555654  23 599999999999999998


Q ss_pred             CCC
Q 038595          523 RPL  525 (534)
Q Consensus       523 rP~  525 (534)
                      ++-
T Consensus       222 p~~  224 (343)
T PRK14468        222 PTA  224 (343)
T ss_pred             ccc
Confidence            653

>PRK13745 anaerobic sulfatase-maturase; Provisional

Probab=98.96  E-value=2.2e-09  Score=114.41  Aligned_cols=77  Identities=14%  Similarity=0.189  Sum_probs=53.1

Q ss_pred             eEEEee-cCCCCCCcc--HHHHHHHHH----hcCCcEEEEcCCCC--HHHHhhcCC-CceEEEEeeCCCHHHHHhhcCCC
Q 038595          456 HCALSL-VGEPIMYPE--INTLVDELH----RRRISTFLVTNAQF--PDKIKLLKP-VTQLYVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       456 h~alSl-~GEPlLyp~--L~elI~~lk----~~gi~~~LvTNGtl--pe~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP~  525 (534)
                      .+.|.+ .|||||+|.  +.+++++++    ..++.+.|.|||++  ++.++.|.. -..|.||||++ ++.|++.++-.
T Consensus        68 ~v~i~f~GGEPlL~~~~~~~~~~~~~~~~~~~~~i~~~i~TNG~ll~~e~~~~l~~~~~~v~ISlDG~-~~~hD~~R~~~  146 (412)
T PRK13745         68 QVLFTWHGGETLMRPLSFYKKALELQKKYARGRQIDNCIQTNGTLLTDEWCEFFRENNFLVGVSIDGP-QEFHDEYRKNK  146 (412)
T ss_pred             eEEEEEEccccCCCcHHHHHHHHHHHHHHcCCCceEEEEeecCEeCCHHHHHHHHHcCeEEEEEecCC-HHHhhhhcCCC
Confidence            345554 399999985  556666554    34778889999997  566666664 23899999998 57777776421


Q ss_pred             -CCchhhhc
Q 038595          526 -FGDFWERF  533 (534)
Q Consensus       526 -~~~~w~~~  533 (534)
                       ....|+++
T Consensus       147 ~g~gsf~~v  155 (412)
T PRK13745        147 MGKPSFVKV  155 (412)
T ss_pred             CCCccHHHH
Confidence             23567765

>PRK07116 flavodoxin; Provisional

Probab=98.96  E-value=5.2e-09  Score=97.74  Aligned_cols=125  Identities=17%  Similarity=0.231  Sum_probs=83.3

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCC-----------------------------ccCcCCCCeEE
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYE-----------------------------PEDLSKEALVL  119 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d-----------------------------~~dL~~~~lvI  119 (534)
                      +++|+|.|.||||+++|+.|++.+....+.+  .....++                             ..++..++.+|
T Consensus         4 k~lIvY~S~tGnT~~iA~~Ia~~l~~d~~~i--~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~D~Ii   81 (160)
T PRK07116          4 KTLVAYFSATGTTKKVAEKLAEVTGADLFEI--KPEQPYTAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAEYDVIF   81 (160)
T ss_pred             cEEEEEECCCCcHHHHHHHHHHHhcCCeEEE--eeCCCCCcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHhCCEEE
Confidence            4899999999999999999999996543222  2111110                             12456689999


Q ss_pred             EEeccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEe-cCcchHHHHHHHHHHHHHHHHHcCCceecceEE
Q 038595          120 IVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGV-GSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVE  198 (534)
Q Consensus       120 fv~STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGL-GDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~  198 (534)
                      |++|+|. |.+|..+..|++.+            .++++++++|+. |.+.+    +.+...+.+.   ++...+.+...
T Consensus        82 ig~Pv~~-~~~p~~v~~fl~~~------------~l~~k~v~~f~T~g~~~~----g~~~~~~~~~---~~~~~~~~~~~  141 (160)
T PRK07116         82 LGFPIWW-YVAPRIINTFLESY------------DFSGKTVIPFATSGGSGI----GNAEKELKKS---YPDANWKEGRL  141 (160)
T ss_pred             EECChhc-cccHHHHHHHHHhc------------CCCCCEEEEEEeCCCCCc----CcHHHHHHHH---CCcCccccCee
Confidence            9999998 77777777776532            467899999988 65554    3445555555   34444444444


Q ss_pred             eeCCCCCcHHHHHHHHHHH
Q 038595          199 GDVDGGELDVVFEDWSKRV  217 (534)
Q Consensus       199 gD~~~g~~e~~f~eW~~~L  217 (534)
                      ++.+.  .+..+++|..++
T Consensus       142 ~~~~~--~~~~i~~wl~~~  158 (160)
T PRK07116        142 LNGGA--SKEEIKEWINKL  158 (160)
T ss_pred             ecCCC--cHHHHHHHHHHc
Confidence            44322  256799998764

>PF12641 Flavodoxin_3: Flavodoxin domain

Probab=98.90  E-value=8.7e-09  Score=97.53  Aligned_cols=97  Identities=22%  Similarity=0.314  Sum_probs=75.4

Q ss_pred             EEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcccc
Q 038595           71 KLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRV  150 (534)
Q Consensus        71 lI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv  150 (534)
                      +|+|.|.||||+++|+.|++.|..    ..++++.+.... +.++++++++..+|. |.+++.+..|+..          
T Consensus         1 lIvYsS~TGNTkkvA~aI~~~l~~----~~~~~~~~~~~~-~~~yD~i~lG~w~d~-G~~d~~~~~fl~~----------   64 (160)
T PF12641_consen    1 LIVYSSRTGNTKKVAEAIAEALGA----KDIVSVEEPPED-LEDYDLIFLGFWIDK-GTPDKDMKEFLKK----------   64 (160)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC----ceeEeccccccC-CCCCCEEEEEcCccC-CCCCHHHHHHHHH----------
Confidence            489999999999999999999874    467788877544 778999999999999 7888888888654          


Q ss_pred             cccCCCCCeEEEEEe-cCcchHHHHHHHHHHHHHHHHH
Q 038595          151 GSLLLSNCKFAVFGV-GSKSYEKTFNMVAKDLSKKMRE  187 (534)
Q Consensus       151 ~~~~Lkgl~yAVFGL-GDs~Y~e~Fc~aAK~LDk~L~k  187 (534)
                          |+|+++++||. |-....+++....+.+...+.+
T Consensus        65 ----l~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~   98 (160)
T PF12641_consen   65 ----LKGKKVALFGTAGAGPDSEYAKKILKNVEALLPK   98 (160)
T ss_pred             ----ccCCeEEEEEecCCCCchHHHHHHHHHHHHhhcc
Confidence                46788999984 3222234667777777777655

>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional

Probab=98.88  E-value=9.2e-09  Score=108.16  Aligned_cols=70  Identities=21%  Similarity=0.229  Sum_probs=54.3

Q ss_pred             CceEEEeecCCCCCCc-cHHHHHHHHHh-cCC-----cEEEEcCCCCHHHHhhcCC-C-ceEEEEeeCCCHHHHHhhcCC
Q 038595          454 PRHCALSLVGEPIMYP-EINTLVDELHR-RRI-----STFLVTNAQFPDKIKLLKP-V-TQLYVSVDAATKDSLKAIDRP  524 (534)
Q Consensus       454 ~~h~alSl~GEPlLyp-~L~elI~~lk~-~gi-----~~~LvTNGtlpe~l~~L~~-v-~qlyvSlDA~~~e~y~~I~rP  524 (534)
                      ++++.|.+.||||++. .+.++++.+++ .|+     .+.+.|||..|... +|.. + -.|.||+||+|++.+++|.++
T Consensus       149 i~~IvfmG~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl~~~i~-~l~~~~~~~LaiSL~a~~~e~r~~I~pi  227 (349)
T PRK14463        149 VRNIVFMGMGEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGLVPEME-ELGREVTVNLAVSLNATTDEVRDRIMPV  227 (349)
T ss_pred             ccEEEEecCCcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCchHHHH-HHhhccCeEEEEeCCCCCHHHHHHhcCc
Confidence            4667889999999975 78888888875 576     68899999877554 4544 2 236699999999999999643

>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional

Probab=98.88  E-value=8.4e-09  Score=108.68  Aligned_cols=113  Identities=15%  Similarity=0.245  Sum_probs=81.4

Q ss_pred             cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCC
Q 038595          355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSN  434 (534)
Q Consensus       355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (534)
                      ..-|+.+|.||..+...      ....-.++||++.++... ..+.. .|  +                           
T Consensus       116 qvGC~~~C~FC~t~~~~------~~r~lt~~EIv~qv~~~~-~~~~~-~g--~---------------------------  158 (356)
T PRK14455        116 QVGCRIGCTFCASTLGG------LKRDLEAGEIVAQVMLVQ-KYLDE-TE--E---------------------------  158 (356)
T ss_pred             CCCCCCCCCcCCCCCCC------CCccCCHHHHHHHHHHHH-HHHhh-cC--C---------------------------
Confidence            34599999999776322      223468889999876432 11111 11  1                           


Q ss_pred             CCCcccccccHHHhhhccCCceEEEeecCCCCCC-ccHHHHHHHHHh-cCC-----cEEEEcCCCCHHHHhhcCC--Cce
Q 038595          435 DGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMY-PEINTLVDELHR-RRI-----STFLVTNAQFPDKIKLLKP--VTQ  505 (534)
Q Consensus       435 ~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLy-p~L~elI~~lk~-~gi-----~~~LvTNGtlpe~l~~L~~--v~q  505 (534)
                                        .++++.++++|||+++ +.+.++++.+++ .|+     .+.|.|||..|...+-+..  -..
T Consensus       159 ------------------~v~~Vv~~GmGEPLln~~~v~~~l~~l~~~~g~~~s~r~itvsT~G~~~~i~~l~d~~l~~~  220 (356)
T PRK14455        159 ------------------RVSHIVVMGIGEPFDNYDNVMDFLRIINDDKGLAIGARHITVSTSGIAPKIYDFADEGLQIN  220 (356)
T ss_pred             ------------------CcceEEEeccccccCCHHHHHHHHHHHhcccCcccCCCceEEEecCchHhHHHHHhcccCee
Confidence                              2467888999999995 789999999997 487     7999999998854332211  134


Q ss_pred             EEEEeeCCCHHHHHhhc
Q 038595          506 LYVSVDAATKDSLKAID  522 (534)
Q Consensus       506 lyvSlDA~~~e~y~~I~  522 (534)
                      |.+||+++|++.++++.
T Consensus       221 LaiSL~a~~~e~r~~l~  237 (356)
T PRK14455        221 LAISLHAPNNELRSSLM  237 (356)
T ss_pred             EEeccCCCCHHHHHHhc
Confidence            78999999999999866

>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family

Probab=98.87  E-value=5.1e-09  Score=106.04  Aligned_cols=69  Identities=26%  Similarity=0.393  Sum_probs=60.9

Q ss_pred             ceEEEeecCCCCCCccH-HHHHHHHHhcCCcEEEEcCCCCH-HHHhhcCC-CceEEEEeeCCCHHHHHhhcCC
Q 038595          455 RHCALSLVGEPIMYPEI-NTLVDELHRRRISTFLVTNAQFP-DKIKLLKP-VTQLYVSVDAATKDSLKAIDRP  524 (534)
Q Consensus       455 ~h~alSl~GEPlLyp~L-~elI~~lk~~gi~~~LvTNGtlp-e~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP  524 (534)
                      ..++||+ |||||+|++ .++++++|+.|+.+.++|||.++ +.+++|++ ++.+.||||+.++++|+++.+.
T Consensus       127 ~~V~~sG-GEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~~~d~~~isl~~~~~~~~~~~~g~  198 (295)
T TIGR02494       127 GGVTLSG-GEPLLQPEFALALLQACHERGIHTAVETSGFTPWETIEKVLPYVDLFLFDIKHLDDERHKEVTGV  198 (295)
T ss_pred             CcEEeeC-cchhchHHHHHHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHhhCCEEEEeeccCChHHHHHHhCC
Confidence            3477888 999999985 79999999999999999999985 67777776 8889999999999999999874

This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0

>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional

Probab=98.86  E-value=1.3e-08  Score=106.85  Aligned_cols=70  Identities=20%  Similarity=0.210  Sum_probs=56.1

Q ss_pred             CceEEEeecCCCCCCc-cHHHHHHHHHh-cCC---cEEEEcCCCCHHHHhhcCCCc---------eEEEEeeCCCHHHHH
Q 038595          454 PRHCALSLVGEPIMYP-EINTLVDELHR-RRI---STFLVTNAQFPDKIKLLKPVT---------QLYVSVDAATKDSLK  519 (534)
Q Consensus       454 ~~h~alSl~GEPlLyp-~L~elI~~lk~-~gi---~~~LvTNGtlpe~l~~L~~v~---------qlyvSlDA~~~e~y~  519 (534)
                      ++++.++++||||+++ .+.++++.+++ .|+   .+.+-|+|-. ..+++|.+.+         .|.|||+|+|++.++
T Consensus       149 ~~~IvfmGmGEPlln~~~v~~~i~~l~~~~~i~~r~itvST~G~~-~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~  227 (345)
T PRK14457        149 VSHVVFMGMGEPLLNIDEVLAAIRCLNQDLGIGQRRITVSTVGVP-KTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRE  227 (345)
T ss_pred             CCEEEEEecCccccCHHHHHHHHHHHhcccCCccCceEEECCCch-hhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHH
Confidence            4678889999999986 58899999876 488   6888998844 4456665422         489999999999999


Q ss_pred             hhcCC
Q 038595          520 AIDRP  524 (534)
Q Consensus       520 ~I~rP  524 (534)
                      +|.+|
T Consensus       228 ~i~p~  232 (345)
T PRK14457        228 TLIPS  232 (345)
T ss_pred             HhcCC
Confidence            99865

>TIGR00048 radical SAM enzyme, Cfr family

Probab=98.86  E-value=1.4e-08  Score=107.01  Aligned_cols=118  Identities=18%  Similarity=0.328  Sum_probs=82.8

Q ss_pred             eeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeecccccccccccccc
Q 038595          350 MEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDK  429 (534)
Q Consensus       350 ~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~  429 (534)
                      +.+++...||.+|.||..+..   | .  ...-.+.||++.++....     +.+..|                      
T Consensus       107 ~cVSsQ~GC~l~C~fC~t~~~---g-~--~r~lt~~Eiv~qv~~~~~-----~~~~~~----------------------  153 (355)
T TIGR00048       107 VCVSSQVGCALGCTFCATAKG---G-F--NRNLEASEIIGQVLRVQK-----INNETG----------------------  153 (355)
T ss_pred             EEEecCCCCCCcCCCCCCCCC---C-C--CCCCCHHHHHHHHHHHHH-----HhhhcC----------------------
Confidence            335566679999999986432   1 1  122467789988764321     112111                      


Q ss_pred             CCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCc-cHHHHHHHHHh-cC--C---cEEEEcCCCCHHHHhhcCC
Q 038595          430 QIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYP-EINTLVDELHR-RR--I---STFLVTNAQFPDKIKLLKP  502 (534)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp-~L~elI~~lk~-~g--i---~~~LvTNGtlpe~l~~L~~  502 (534)
                                            -.+.++.|++.|||++++ .+.++++.+++ .|  |   .+.+.|||..|. +++|.+
T Consensus       154 ----------------------~~v~nVvfmGmGEPLln~d~v~~~l~~l~~~~g~~i~~~~itisT~G~~~~-i~~l~~  210 (355)
T TIGR00048       154 ----------------------ERVSNVVFMGMGEPLLNLNEVVKAMEIMNDDFGLGISKRRITISTSGVVPK-IDILAD  210 (355)
T ss_pred             ----------------------CCeeEEEEecCCchhhCHHHHHHHHHHhhcccccCcCCCeEEEECCCchHH-HHHHHH
Confidence                                  025678889999999985 79999999985 44  6   599999998864 344433


Q ss_pred             --Cc-eEEEEeeCCCHHHHHhhcC
Q 038595          503 --VT-QLYVSVDAATKDSLKAIDR  523 (534)
Q Consensus       503 --v~-qlyvSlDA~~~e~y~~I~r  523 (534)
                        ++ .|.|||||++++.|++|..
T Consensus       211 ~~l~~~LaiSL~a~~~e~r~~l~p  234 (355)
T TIGR00048       211 KMLQVALAISLHAPNDELRSSLMP  234 (355)
T ss_pred             hCCCcEEEEEeCCCCHHHHHHhcC
Confidence              34 5889999999999999974

A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.

>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]

Probab=98.85  E-value=9.4e-09  Score=104.11  Aligned_cols=70  Identities=21%  Similarity=0.396  Sum_probs=59.4

Q ss_pred             cCCCCCCccHHHHHHHHHhc-CCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCCCchhhhc
Q 038595          462 VGEPIMYPEINTLVDELHRR-RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLFGDFWERF  533 (534)
Q Consensus       462 ~GEPlLyp~L~elI~~lk~~-gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~~~~w~~~  533 (534)
                      .|||+|+|++.++++++++. ++.+.+.|||++  .+.++.|..  ++.+.||+|+.+++.|..+.+  ....|++.
T Consensus        73 gGEPll~~d~~ei~~~~~~~~~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg--~~g~~~~~  147 (347)
T COG0535          73 GGEPLLRPDLLEIVEYARKKGGIRVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRG--VKGVFKRA  147 (347)
T ss_pred             CCCccccccHHHHHHHHhhcCCeEEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcC--CCcHHHHH
Confidence            49999999999999999977 999999999955  477777765  899999999999999888887  24456653

>PF12724 Flavodoxin_5: Flavodoxin domain

Probab=98.85  E-value=3e-08  Score=90.90  Aligned_cols=86  Identities=27%  Similarity=0.409  Sum_probs=67.6

Q ss_pred             EEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcccc
Q 038595           71 KLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRV  150 (534)
Q Consensus        71 lI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv  150 (534)
                      +|+|.|.||||+++|+.|++.|.+.+..+++.++.+ +..++..++.+||++|+|+ |.+|..+..|++.+.+       
T Consensus         1 LIvY~S~~G~Tk~~A~~ia~~l~~~~~~v~~~~~~~-~~~~~~~yD~vi~gspiy~-g~~~~~~~~fi~~~~~-------   71 (143)
T PF12724_consen    1 LIVYFSKTGNTKKIAEWIAEKLGEEGELVDLEKVEE-DEPDLSDYDAVIFGSPIYA-GRIPGEMREFIKKNKD-------   71 (143)
T ss_pred             CEEEECCCchHHHHHHHHHHHHhhhccEEEHHhhhh-cccccccCCEEEEEEEEEC-CcCCHHHHHHHHHHHH-------
Confidence            589999999999999999999997755444444321 3346788999999999999 7777778888877643       


Q ss_pred             cccCCCCCeEEEEEecCc
Q 038595          151 GSLLLSNCKFAVFGVGSK  168 (534)
Q Consensus       151 ~~~~Lkgl~yAVFGLGDs  168 (534)
                         .|+++++++|..|-.
T Consensus        72 ---~l~~k~v~~f~~~~~   86 (143)
T PF12724_consen   72 ---NLKNKKVALFSVGGS   86 (143)
T ss_pred             ---HHcCCcEEEEEEeCC
Confidence               468899999987633

>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM

Probab=98.84  E-value=1e-08  Score=94.83  Aligned_cols=118  Identities=19%  Similarity=0.293  Sum_probs=83.5

Q ss_pred             ecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCC
Q 038595          352 ATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQI  431 (534)
Q Consensus       352 ~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~  431 (534)
                      +.++..||++|.||......  +.   ....+|++|+..+.+..    .+  |...                        
T Consensus         5 i~~t~~C~~~C~yC~~~~~~--~~---~~~~~~e~i~~~~~~~~----~~--~~~~------------------------   49 (216)
T smart00729        5 YIITRGCPRRCTFCSFPSAR--GK---LRSRYLEALVREIELLA----EK--GEKE------------------------   49 (216)
T ss_pred             EEecCchhccCCcCCcCccc--cc---hhHHHHHHHHHHHHHHH----hc--ccCC------------------------
Confidence            45677899999999997544  22   34456777777665531    11  1000                        


Q ss_pred             CCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCc--cHHHHHHHHHhcC-----CcEEEEcCCCC--HHHHhhcCC
Q 038595          432 PSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYP--EINTLVDELHRRR-----ISTFLVTNAQF--PDKIKLLKP  502 (534)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp--~L~elI~~lk~~g-----i~~~LvTNGtl--pe~l~~L~~  502 (534)
                                           ..-..-+-+.|||++++  .+.++++.+++.+     ..+.+.|||.+  ++.++.|.+
T Consensus        50 ---------------------~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~  108 (216)
T smart00729       50 ---------------------ILVGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKE  108 (216)
T ss_pred             ---------------------cceeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCcccCCHHHHHHHHH
Confidence                                 00012223359999998  6999999999873     56889999775  778888886


Q ss_pred             --CceEEEEeeCCCHHHHHhhcCCC
Q 038595          503 --VTQLYVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       503 --v~qlyvSlDA~~~e~y~~I~rP~  525 (534)
                        ++.+.+|+|+.+++.++.++++.
T Consensus       109 ~~~~~i~isl~~~~~~~~~~~~~~~  133 (216)
T smart00729      109 AGVNRVSLGVQSGSDEVLKAINRGH  133 (216)
T ss_pred             cCCCeEEEecccCCHHHHHHhcCCC
Confidence              67999999999999999988753

This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.

>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional

Probab=98.84  E-value=1.5e-08  Score=106.70  Aligned_cols=71  Identities=17%  Similarity=0.195  Sum_probs=56.5

Q ss_pred             CceEEEeecCCCCCC-ccHHHHHHHHHh-cCC-----cEEEEcCCCCHHHH----hhcCCCceEEEEeeCCCHHHHHhhc
Q 038595          454 PRHCALSLVGEPIMY-PEINTLVDELHR-RRI-----STFLVTNAQFPDKI----KLLKPVTQLYVSVDAATKDSLKAID  522 (534)
Q Consensus       454 ~~h~alSl~GEPlLy-p~L~elI~~lk~-~gi-----~~~LvTNGtlpe~l----~~L~~v~qlyvSlDA~~~e~y~~I~  522 (534)
                      +..+.++++||||++ ..+.++++.+++ .|+     .+.|.|||..|...    +.+++-..|.|||+|+|+|.+++|.
T Consensus       148 v~~VvfmGmGEPL~N~d~v~~~l~~l~~~~gl~~~~r~itvsT~G~~~~i~~l~~~~~l~~v~LalSLha~~~e~r~~i~  227 (348)
T PRK14467        148 IRNVVFMGMGEPLANYENVRKAVQIMTSPWGLDLSKRRITISTSGIIHQIKRMAEDPVMPEVNLAVSLNASSQKLRERIM  227 (348)
T ss_pred             CCeEEEEccChhhcCHHHHHHHHHHHcChhccCcCCCcEEEECCCChhHHHHHHhhccccCeeEEEECCCCCHHHHHHhc
Confidence            356788999999996 589999999976 688     79999999887522    1222323577999999999999999


Q ss_pred             CC
Q 038595          523 RP  524 (534)
Q Consensus       523 rP  524 (534)
                      ++
T Consensus       228 p~  229 (348)
T PRK14467        228 PI  229 (348)
T ss_pred             CC
Confidence            75

>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=1.1e-08  Score=103.57  Aligned_cols=70  Identities=19%  Similarity=0.266  Sum_probs=59.3

Q ss_pred             CCCCCC-ccHHHHHHHHHhcCCcEEEEcCCCC-HHHHhhcCC-CceEEEEeeCCCHHHHHhhcCCCCCchhhh
Q 038595          463 GEPIMY-PEINTLVDELHRRRISTFLVTNAQF-PDKIKLLKP-VTQLYVSVDAATKDSLKAIDRPLFGDFWER  532 (534)
Q Consensus       463 GEPlLy-p~L~elI~~lk~~gi~~~LvTNGtl-pe~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP~~~~~w~~  532 (534)
                      |||+++ +.+.++++.+|+.|+.+.++|||.+ |+.+++|.+ +|.+.+-|-+.+.+.|++++.--....|+.
T Consensus        92 GEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~~~~~l~~~~D~v~~DlK~~~~~~y~~~tg~~~~~vl~~  164 (260)
T COG1180          92 GEPTLQAEFALDLLRAAKERGLHVALDTNGFLPPEALEELLPLLDAVLLDLKAFDDELYRKLTGADNEPVLEN  164 (260)
T ss_pred             CcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHhhcCeEEEeeccCChHHHHHHhCCCcHHHHHH
Confidence            999996 5899999999999999999999998 455667777 799999999999999999986544445543

>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional

Probab=98.74  E-value=4.5e-08  Score=102.94  Aligned_cols=71  Identities=13%  Similarity=0.111  Sum_probs=54.4

Q ss_pred             CceEEEeecCCCCCC-ccHHHHHHHHHhc-CC-----cEEEEcCCCCHHHHhhcCC-CceEEEEeeCCCHHHHHhhcCC
Q 038595          454 PRHCALSLVGEPIMY-PEINTLVDELHRR-RI-----STFLVTNAQFPDKIKLLKP-VTQLYVSVDAATKDSLKAIDRP  524 (534)
Q Consensus       454 ~~h~alSl~GEPlLy-p~L~elI~~lk~~-gi-----~~~LvTNGtlpe~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP  524 (534)
                      ++++.|+++|||+++ ..+-+.++.++.. |+     .+.+-|||..|...+.+.. --.|.|||+|+|.+.+++|..+
T Consensus       149 i~nIvfmGmGEPL~N~d~vi~al~~l~~~~g~~~s~r~ItVsT~G~~~~i~~l~~~~~~~LavSLha~~~e~R~~i~P~  227 (345)
T PRK14466        149 LTNLVFMGMGEPLDNLDEVLKALEILTAPYGYGWSPKRITVSTVGLKKGLKRFLEESECHLAISLHSPFPEQRRELMPA  227 (345)
T ss_pred             CCeEEEeeeCcCcccHHHHHHHHHHHhhccccCcCCceEEEEcCCCchHHHHHhhccCcEEEEEcCCCCHHHHHHhcCC
Confidence            578999999999984 4566666666543 65     6999999988765432222 2468999999999999999965

>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]

Probab=98.71  E-value=2.9e-08  Score=95.22  Aligned_cols=117  Identities=19%  Similarity=0.317  Sum_probs=85.1

Q ss_pred             cccccccccccccCC-CCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCC
Q 038595          355 SLACANKCVFCWRHH-TNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPS  433 (534)
Q Consensus       355 ~~~C~~~C~~C~r~~-~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (534)
                      +.-||..|-|||.-. +.++...  |.+-.|+++++..++.-++    + |                             
T Consensus        48 ~VGCnl~CayCw~y~r~~~~~ra--g~f~~P~eVaeRL~ei~K~----~-g-----------------------------   91 (228)
T COG5014          48 TVGCNLLCAYCWNYFRNLRPKRA--GDFLSPEEVAERLLEISKK----R-G-----------------------------   91 (228)
T ss_pred             ccccceeeHHhhhhhhcCCcccc--ccccCHHHHHHHHHHHHHh----c-C-----------------------------
Confidence            456999999999853 4455444  4668999999998764333    2 2                             


Q ss_pred             CCCCcccccccHHHhhhccCCceEEEeecCCCCCCc-cHHHHHHHHHhcCCcEEEEcCCCC----HHHHhhcCC--CceE
Q 038595          434 NDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYP-EINTLVDELHRRRISTFLVTNAQF----PDKIKLLKP--VTQL  506 (534)
Q Consensus       434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp-~L~elI~~lk~~gi~~~LvTNGtl----pe~l~~L~~--v~ql  506 (534)
                                          .+.+.||+ |||+|-+ |+.|+|+++-.  .+-.|.|||++    +.-.++|..  =-.+
T Consensus        92 --------------------~d~vRiSG-~EP~l~~EHvlevIeLl~~--~tFvlETNG~~~g~drslv~el~nr~nv~v  148 (228)
T COG5014          92 --------------------CDLVRISG-AEPILGREHVLEVIELLVN--NTFVLETNGLMFGFDRSLVDELVNRLNVLV  148 (228)
T ss_pred             --------------------CcEEEeeC-CCccccHHHHHHHHHhccC--ceEEEEeCCeEEecCHHHHHHHhcCCceEE
Confidence                                23455564 9999987 89999999844  35568999997    455555553  2458


Q ss_pred             EEEeeCCCHHHHHhhcCCCCCchhh
Q 038595          507 YVSVDAATKDSLKAIDRPLFGDFWE  531 (534)
Q Consensus       507 yvSlDA~~~e~y~~I~rP~~~~~w~  531 (534)
                      .|||.+.|+|+|.+|.+- .++|+.
T Consensus       149 RVsvKG~dpesF~kIT~a-sp~~F~  172 (228)
T COG5014         149 RVSVKGWDPESFEKITGA-SPEYFR  172 (228)
T ss_pred             EEEecCCCHHHHHHHhcC-ChHHHH
Confidence            999999999999999963 455554

>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional

Probab=98.68  E-value=1e-07  Score=101.22  Aligned_cols=69  Identities=20%  Similarity=0.275  Sum_probs=56.6

Q ss_pred             CceEEEeecCCCCC-CccHHHHHHHHHh-----cCC---cEEEEcCCCCHHHHhhcCC--C-ceEEEEeeCCCHHHHHhh
Q 038595          454 PRHCALSLVGEPIM-YPEINTLVDELHR-----RRI---STFLVTNAQFPDKIKLLKP--V-TQLYVSVDAATKDSLKAI  521 (534)
Q Consensus       454 ~~h~alSl~GEPlL-yp~L~elI~~lk~-----~gi---~~~LvTNGtlpe~l~~L~~--v-~qlyvSlDA~~~e~y~~I  521 (534)
                      ++++.|+++||||+ |+.+.++|+.+++     .|+   .+.+-|.|-.|. +++|..  + ..|.|||+|+|++.+++|
T Consensus       177 i~nVvfmGmGEPLlN~d~V~~~i~~l~~~~~~g~gis~r~ITvST~Gl~~~-i~~la~~~l~~~LavSLha~d~e~R~~l  255 (373)
T PRK14459        177 LSNVVFMGMGEPLANYKRVVAAVRRITAPAPEGLGISARNVTVSTVGLVPA-IRKLADEGLPVTLAVSLHAPDDELRDEL  255 (373)
T ss_pred             eeEEEEecCCcchhhHHHHHHHHHHHhCcccccCCccCCEEEEECcCchhH-HHHHHHhcCCeEEEEEeCCCCHHHHHHh
Confidence            67899999999999 7889999999987     477   688999997764 223321  2 359999999999999999


Q ss_pred             cC
Q 038595          522 DR  523 (534)
Q Consensus       522 ~r  523 (534)
                      ..
T Consensus       256 ~p  257 (373)
T PRK14459        256 VP  257 (373)
T ss_pred             cC
Confidence            84

>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional

Probab=98.63  E-value=2.5e-07  Score=97.44  Aligned_cols=70  Identities=16%  Similarity=0.183  Sum_probs=57.6

Q ss_pred             CceEEEeecCCCCCCccHHHHHHHHHhc---CCc---EEEEcCCCCH--HHHhhcCCCceEEEEeeCCCHHHHHhhcC
Q 038595          454 PRHCALSLVGEPIMYPEINTLVDELHRR---RIS---TFLVTNAQFP--DKIKLLKPVTQLYVSVDAATKDSLKAIDR  523 (534)
Q Consensus       454 ~~h~alSl~GEPlLyp~L~elI~~lk~~---gi~---~~LvTNGtlp--e~l~~L~~v~qlyvSlDA~~~e~y~~I~r  523 (534)
                      ++.+.|+++|||++++.+.++|+.+++.   |++   +.|.|+|..|  +.+++..+-..|.+||+++|.+..+++..
T Consensus       147 i~~IvfmGmGEPLln~~v~~~i~~l~~~~~~~~~~r~itVsT~G~~~~i~~l~~~~~~v~LalSLha~dd~~r~~l~p  224 (347)
T PRK14453        147 LDSISFMGMGEALANPELFDALKILTDPNLFGLSQRRITISTIGIIPGIQRLTQEFPQVNLTFSLHSPFESQRSELMP  224 (347)
T ss_pred             cceEEEeecCCccCCHHHHHHHHHHhcccccCCCCCcEEEECCCCchhHHHHHhhccCcCEEEEecCCCHHHHHHhcC
Confidence            4678999999999999999999999863   555   9999999885  56666555355777999999999888873

>PRK15108 biotin synthase; Provisional

Probab=98.62  E-value=1.4e-07  Score=98.99  Aligned_cols=120  Identities=15%  Similarity=0.263  Sum_probs=87.0

Q ss_pred             ccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCC
Q 038595          354 PSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPS  433 (534)
Q Consensus       354 p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (534)
                      .|..|+++|.||.-...++.+.. ....-+|++|++.+...     +.+ |                             
T Consensus        49 ~Tn~C~~~C~yC~~~~~~~~~~~-~~~~ls~eEI~~~a~~~-----~~~-G-----------------------------   92 (345)
T PRK15108         49 KTGACPEDCKYCPQSSRYKTGLE-AERLMEVEQVLESARKA-----KAA-G-----------------------------   92 (345)
T ss_pred             ECCCcCCCCcCCCCcccCCCCCC-cccCCCHHHHHHHHHHH-----HHc-C-----------------------------
Confidence            58899999999987643322211 12346889999987532     221 2                             


Q ss_pred             CCCCcccccccHHHhhhccCCceEEEeecC-CCCC--CccHHHHHHHHHhcCCcEEEEcCCCC-HHHHhhcCC--CceEE
Q 038595          434 NDGEEKEGGVTLERLNEGLTPRHCALSLVG-EPIM--YPEINTLVDELHRRRISTFLVTNAQF-PDKIKLLKP--VTQLY  507 (534)
Q Consensus       434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~G-EPlL--yp~L~elI~~lk~~gi~~~LvTNGtl-pe~l~~L~~--v~qly  507 (534)
                                          ++++.+..+| +|..  ..++.++++.+|+.++.+. +|||.+ ++.+++|..  ++.+.
T Consensus        93 --------------------~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~-~s~G~ls~e~l~~LkeAGld~~n  151 (345)
T PRK15108         93 --------------------STRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETC-MTLGTLSESQAQRLANAGLDYYN  151 (345)
T ss_pred             --------------------CCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEE-EeCCcCCHHHHHHHHHcCCCEEe
Confidence                                2345555554 6654  4789999999999898774 899987 688888875  99999


Q ss_pred             EEeeCCCHHHHHhhcCCCCCchhhhc
Q 038595          508 VSVDAATKDSLKAIDRPLFGDFWERF  533 (534)
Q Consensus       508 vSlDA~~~e~y~~I~rP~~~~~w~~~  533 (534)
                      ++||+ +++.|.+|+.+  .++|+|+
T Consensus       152 ~~leT-~p~~f~~I~~~--~~~~~rl  174 (345)
T PRK15108        152 HNLDT-SPEFYGNIITT--RTYQERL  174 (345)
T ss_pred             ecccc-ChHhcCCCCCC--CCHHHHH
Confidence            99999 89999999865  3566653

>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]

Probab=98.59  E-value=1.5e-07  Score=100.04  Aligned_cols=123  Identities=16%  Similarity=0.277  Sum_probs=78.4

Q ss_pred             eeeccccc-ccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccc
Q 038595          350 MEATPSLA-CANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAID  428 (534)
Q Consensus       350 ~~~~p~~~-C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~  428 (534)
                      +.+-|+.. ||.+|.||+-.+..+...    .|.  ++.++..++.+       ...++                     
T Consensus         9 ~~~kpt~~~CNL~C~YC~~~~~~~~~~----~Ms--~etle~~i~~~-------~~~~~---------------------   54 (378)
T COG0641           9 VMAKPTGFECNLDCKYCFYLEKESLQR----IMS--DETLEEYVRQY-------IAASN---------------------   54 (378)
T ss_pred             hhcCcccCccCCCCCeeCcccCCCCCC----CCC--HHHHHHHHHHH-------HhhCC---------------------
Confidence            35668877 999999999987665432    233  35666665432       22222                     


Q ss_pred             cCCCCCCCCcccccccHHHhhhccCCceEEEeec-CCCCCC-ccHHHHHHHHHhc---C--CcEEEEcCCCC--HHHHhh
Q 038595          429 KQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLV-GEPIMY-PEINTLVDELHRR---R--ISTFLVTNAQF--PDKIKL  499 (534)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~-GEPlLy-p~L~elI~~lk~~---g--i~~~LvTNGtl--pe~l~~  499 (534)
                                               .+.++|... |||||. ..+-+.+..+.++   |  |.-++.|||++  ++..+-
T Consensus        55 -------------------------~~~v~~~w~GGEPlL~~~~f~~~~~~l~~k~~~~~~i~~siqTNg~LL~~e~~e~  109 (378)
T COG0641          55 -------------------------GDKVTFTWQGGEPLLAGLDFYRKAVALQQKYANGKTISNALQTNGTLLNDEWAEF  109 (378)
T ss_pred             -------------------------CCeeEEEEECCccccchHHHHHHHHHHHHHHhcCCeeEEEEEEcccccCHHHHHH
Confidence                                     122555655 999998 4666666554432   4  44669999998  566665


Q ss_pred             cCC--CceEEEEeeCCCHHHHHhhcCCCC-Cchhhhc
Q 038595          500 LKP--VTQLYVSVDAATKDSLKAIDRPLF-GDFWERF  533 (534)
Q Consensus       500 L~~--v~qlyvSlDA~~~e~y~~I~rP~~-~~~w~~~  533 (534)
                      |.+  + .+-||||+| +|.+++-+.-.. +..|+|+
T Consensus       110 l~~~~~-~IgISiDGp-~eihD~~R~~~~GkgTfd~i  144 (378)
T COG0641         110 LAEHDF-LIGISIDGP-EEIHDKYRVTKSGKGTFDRV  144 (378)
T ss_pred             HHhcCc-eEEEeccCc-hHhccccccCCCCCccHHHH
Confidence            554  6 799999999 777766653222 2456554

>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional

Probab=98.59  E-value=1.5e-07  Score=98.86  Aligned_cols=109  Identities=16%  Similarity=0.252  Sum_probs=79.1

Q ss_pred             ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCCC
Q 038595          356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSND  435 (534)
Q Consensus       356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (534)
                      .-|+.+|.||..+.....+    .  -.+.||++.++...+.     .|  ..                           
T Consensus       113 vGC~m~C~FC~tg~~g~~r----n--lta~EI~~qv~~~~~~-----~~--~~---------------------------  152 (342)
T PRK14465        113 IGCTLNCKFCATAKLEFQG----N--LKAHEIVDQVLQVEKI-----VG--DR---------------------------  152 (342)
T ss_pred             CCCCCCCCCCcCCCCCccC----C--CCHHHHHHHHHHHHHh-----cC--CC---------------------------
Confidence            3599999999986533222    1  2677999999864321     12  11                           


Q ss_pred             CCcccccccHHHhhhccCCceEEEeecCCCCCC-ccHHHHHHHHHhc---CC---cEEEEcCCCCHHHHhhcCC--CceE
Q 038595          436 GEEKEGGVTLERLNEGLTPRHCALSLVGEPIMY-PEINTLVDELHRR---RI---STFLVTNAQFPDKIKLLKP--VTQL  506 (534)
Q Consensus       436 ~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLy-p~L~elI~~lk~~---gi---~~~LvTNGtlpe~l~~L~~--v~ql  506 (534)
                                        +.++.+.++|||++. ..+.+.++++++.   ++   .+.+-|||..|...+-+..  --.|
T Consensus       153 ------------------~~niVFmGmGEPL~N~d~V~~~~~~l~~~~~~~~~~r~itvST~G~~~~i~~l~~~~~~~~L  214 (342)
T PRK14465        153 ------------------ATNVVFMGMGEPMHNYFNVIRAASILHDPDAFNLGAKRITISTSGVVNGIRRFIENKEPYNF  214 (342)
T ss_pred             ------------------ceEEEEEcCCcchhhHHHHHHHHHHHhChhhhcCCCCeEEEeCCCchHHHHHHHhhccCceE
Confidence                              345666899999995 7899999999875   33   5889999999776543221  2479


Q ss_pred             EEEeeCCCHHHHHhhc
Q 038595          507 YVSVDAATKDSLKAID  522 (534)
Q Consensus       507 yvSlDA~~~e~y~~I~  522 (534)
                      .|||||+|.+.+.++.
T Consensus       215 aiSLhA~~~e~R~~l~  230 (342)
T PRK14465        215 AISLNHPDPNGRLQIM  230 (342)
T ss_pred             EEEecCCChhhcceEe
Confidence            9999999999999996

>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional

Probab=98.58  E-value=2.2e-07  Score=97.58  Aligned_cols=66  Identities=18%  Similarity=0.152  Sum_probs=54.0

Q ss_pred             EEEeecCCCCCCc-cHHHHHHHHHh-cCC-----cEEEEcCCCCHHHHhhcCC---CceEEEEeeCCCHHHHHhhcC
Q 038595          457 CALSLVGEPIMYP-EINTLVDELHR-RRI-----STFLVTNAQFPDKIKLLKP---VTQLYVSVDAATKDSLKAIDR  523 (534)
Q Consensus       457 ~alSl~GEPlLyp-~L~elI~~lk~-~gi-----~~~LvTNGtlpe~l~~L~~---v~qlyvSlDA~~~e~y~~I~r  523 (534)
                      +.+-+.||||+++ .+.++++.+++ .|+     .+.|.|+|..|.. .+|.+   ...|.+||.|+|++.++++..
T Consensus       152 vV~mggGEPLln~d~v~~~l~~l~~~~gi~~~~r~itvsTsG~~p~i-~~l~~~~~~~~laisLka~d~e~r~~l~p  227 (342)
T PRK14454        152 IVLMGSGEPLDNYENVMKFLKIVNSPYGLNIGQRHITLSTCGIVPKI-YELADENLQITLAISLHAPNDELRKKMMP  227 (342)
T ss_pred             EEEECCchhhcCHHHHHHHHHHHhcccccCcCCCceEEECcCChhHH-HHHHhhcccceEEEecCCCCHHHHHHhcC
Confidence            3446779999987 59999999997 588     7899999999864 44443   234899999999999999985

>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional

Probab=98.56  E-value=2.6e-07  Score=97.69  Aligned_cols=69  Identities=17%  Similarity=0.200  Sum_probs=56.3

Q ss_pred             CceEEEeecCCCCCCc-cHHHHHHHHHhc-CC-----cEEEEcCCCCHHHHhhcCCCc---eEEEEeeCCCHHHHHhhcC
Q 038595          454 PRHCALSLVGEPIMYP-EINTLVDELHRR-RI-----STFLVTNAQFPDKIKLLKPVT---QLYVSVDAATKDSLKAIDR  523 (534)
Q Consensus       454 ~~h~alSl~GEPlLyp-~L~elI~~lk~~-gi-----~~~LvTNGtlpe~l~~L~~v~---qlyvSlDA~~~e~y~~I~r  523 (534)
                      ...+.++++||||+++ .+.++++.+++. |+     .+.|-|.|..| .+++|.+.+   .|.|||.++|++.++++..
T Consensus       161 ~~~vVfmGmGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~-~i~~L~~~dl~v~LaiSLha~d~e~r~~l~p  239 (356)
T PRK14462        161 RVNIVYMGMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLAS-KIKKLGEMNLGVQLAISLHAVDDELRSELMP  239 (356)
T ss_pred             cCCeEEeCCcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCCChH-HHHHHHhcCCCeEEEEECCCCCHHHHHHhCC
Confidence            3467889999999975 788999999984 87     45999999776 555666534   3788999999999999974

>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1

Probab=98.54  E-value=4.5e-07  Score=82.71  Aligned_cols=118  Identities=18%  Similarity=0.190  Sum_probs=92.8

Q ss_pred             cEEEEEECcc--chHHHHHHHHHHHHhhCCCceEEECCCCCC--------------ccC-------cCCCCeEEEEeccC
Q 038595           69 KGKLFFISQT--GTSKTLAKRLHALLTSNDLLFDLVDPQTYE--------------PED-------LSKEALVLIVASSW  125 (534)
Q Consensus        69 kVlI~YgSqT--GtTE~lAe~La~~L~~~Gl~v~V~dL~d~d--------------~~d-------L~~~~lvIfv~STY  125 (534)
                      +|+|++||..  |+|+.+|+.+.+.+.+.|++++++++.+++              .++       +...+.+||++|+|
T Consensus         2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y   81 (152)
T PF03358_consen    2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVY   81 (152)
T ss_dssp             EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEB
T ss_pred             EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecEE
Confidence            5899999985  999999999999999999999999999861              111       33578999999999


Q ss_pred             CCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecc
Q 038595          126 EDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLP  195 (534)
Q Consensus       126 g~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~p  195 (534)
                      . |.+|.-++.|++++...      ....++++.+++++.|-+.++  -..+...+..+|..+|+..+-.
T Consensus        82 ~-~~~s~~lK~~lD~~~~~------~~~~~~~K~~~~i~~~g~~~g--~~~~~~~l~~~~~~~~~~~~~~  142 (152)
T PF03358_consen   82 N-GSVSGQLKNFLDRLSCW------FRRALRGKPVAIIAVGGGRRG--GLRALEQLRQILDYLGMIVVPS  142 (152)
T ss_dssp             T-TBE-HHHHHHHHTHHHT------HTTTTTTSEEEEEEEESSSST--THHHHHHHHHHHHHTTBEEECC
T ss_pred             c-CcCChhhhHHHHHhccc------cccccCCCEEEEEEEecCCcH--HHHHHHHHHHHHHHCCCEEcCC
Confidence            9 66667799999998641      135789999999987744332  2456778888888899876644

5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....

>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein

Probab=98.47  E-value=3.2e-07  Score=85.74  Aligned_cols=57  Identities=16%  Similarity=0.167  Sum_probs=40.5

Q ss_pred             eEEEeecCCCCCCc---cHHHHHHHHHhc-CCcEEEEcCCCCHHH-Hh-----hcCC-CceEEEEeeCCCHH
Q 038595          456 HCALSLVGEPIMYP---EINTLVDELHRR-RISTFLVTNAQFPDK-IK-----LLKP-VTQLYVSVDAATKD  516 (534)
Q Consensus       456 h~alSl~GEPlLyp---~L~elI~~lk~~-gi~~~LvTNGtlpe~-l~-----~L~~-v~qlyvSlDA~~~e  516 (534)
                      .++||+ |||+|++   .|.++++.+|+. ++.+.++|||..++. ++     ++++ +| +  -||.+--+
T Consensus        66 gVt~sG-GEPllq~~~~~l~~ll~~~k~~~~~~~~~~~tG~~~~~~~~~~~~~~~l~~~D-~--liDgk~~~  133 (154)
T TIGR02491        66 GLTLSG-GDPLYPRNVEELIELVKKIKAEFPEKDIWLWTGYTWEEILEDEKHLEVLKYID-V--LVDGKFEL  133 (154)
T ss_pred             eEEEeC-hhhCCCCCHHHHHHHHHHHHHhCCCCCEEEeeCccHHHHhcchhHHHHHhhCC-E--EEechhhh
Confidence            356666 9999987   788888888876 788888999988543 32     4555 55 3  36666444

This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.

>PRK10076 pyruvate formate lyase II activase; Provisional

Probab=98.46  E-value=3.7e-07  Score=90.08  Aligned_cols=61  Identities=16%  Similarity=0.266  Sum_probs=56.8

Q ss_pred             CCCCCCcc-HHHHHHHHHhcCCcEEEEcCCCCH-HHHhhcCC-CceEEEEeeCCCHHHHHhhcC
Q 038595          463 GEPIMYPE-INTLVDELHRRRISTFLVTNAQFP-DKIKLLKP-VTQLYVSVDAATKDSLKAIDR  523 (534)
Q Consensus       463 GEPlLyp~-L~elI~~lk~~gi~~~LvTNGtlp-e~l~~L~~-v~qlyvSlDA~~~e~y~~I~r  523 (534)
                      |||||+++ +.++++.+|+.|+.+.|+|||..| +.+++|++ +|.+.+.|-+.|++.|+++.+
T Consensus        47 GEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG  110 (213)
T PRK10076         47 GEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK  110 (213)
T ss_pred             chHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHC
Confidence            99999996 689999999999999999999995 67888888 899999999999999999986

>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]

Probab=98.41  E-value=5.6e-07  Score=85.36  Aligned_cols=110  Identities=21%  Similarity=0.189  Sum_probs=86.1

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      +++|+|+|.+|+|.++|+.|+..|.+.|++|++.|+.....-++.+++.+|++.|-|- |..-.....|+..-.+     
T Consensus         2 k~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~~-~h~~~~~~~Fv~k~~e-----   75 (175)
T COG4635           2 KTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIRY-GHFHEAVQSFVKKHAE-----   75 (175)
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchhh-hhhHHHHHHHHHHHHH-----
Confidence            4899999999999999999999999999999999999886557888999999999887 8777777888776544     


Q ss_pred             cccccCCCCCeEEEEEecCcchHHHH---HHHHHHHHHHHHHcCCc
Q 038595          149 RVGSLLLSNCKFAVFGVGSKSYEKTF---NMVAKDLSKKMRELGAG  191 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~F---c~aAK~LDk~L~kLGA~  191 (534)
                           .|+++..|+|.++=. | +.+   -.+-..+++.|.+--.+
T Consensus        76 -----~L~~kP~A~f~vnl~-a-~k~k~~~e~~~yv~kfl~~~~Wq  114 (175)
T COG4635          76 -----ALSTKPSAFFSVNLT-A-RKEKRTPETNSYVRKFLMKSPWQ  114 (175)
T ss_pred             -----HHhcCCceEEEeehh-h-cccccCchHHHHHHHHHhcCCCc
Confidence                 578899999987522 2 122   23344566666664443

>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional

Probab=98.38  E-value=1.9e-06  Score=91.60  Aligned_cols=69  Identities=16%  Similarity=0.229  Sum_probs=55.6

Q ss_pred             CceEEEeecCCCCCCc-cHHHHHHHHHh-cC--C---cEEEEcCCCCHHHHhhcCC-Cc-eEEEEeeCCCHHHHHhhcC
Q 038595          454 PRHCALSLVGEPIMYP-EINTLVDELHR-RR--I---STFLVTNAQFPDKIKLLKP-VT-QLYVSVDAATKDSLKAIDR  523 (534)
Q Consensus       454 ~~h~alSl~GEPlLyp-~L~elI~~lk~-~g--i---~~~LvTNGtlpe~l~~L~~-v~-qlyvSlDA~~~e~y~~I~r  523 (534)
                      ++++.+.++||||++. .+.++++.+++ .|  +   .+.|-|+|..|. +++|.+ .+ .|.+||.|+|++.++++..
T Consensus       158 ~~nvV~mGmGEPL~N~d~v~~al~~l~~~~g~~i~~r~itVsTsG~~~~-i~~l~~~~d~~LaiSLha~d~e~R~~lmP  235 (372)
T PRK11194        158 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPA-LDKLGDMIDVALAISLHAPNDELRDEIVP  235 (372)
T ss_pred             cceEEEecCCccccCHHHHHHHHHHHhhhhccCcCCCeEEEECCCCchH-HHHHHhccCeEEEeeccCCCHHHHHHhcC
Confidence            5778889999999965 67899999984 45  4   699999998774 455554 33 5889999999999999983

>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional

Probab=98.32  E-value=7.6e-07  Score=93.75  Aligned_cols=109  Identities=19%  Similarity=0.236  Sum_probs=74.4

Q ss_pred             ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCCC
Q 038595          356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSND  435 (534)
Q Consensus       356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (534)
                      ..|+..|+||.++.....     . --.+.||++.+....+        .|.                            
T Consensus       104 vGC~~~C~FC~tg~~g~~-----R-nLs~~EI~~Qv~~~~~--------~~~----------------------------  141 (344)
T PRK14464        104 VGCAVGCVFCMTGRSGLL-----R-QLGSAEIVAQVVLARR--------RRA----------------------------  141 (344)
T ss_pred             CCcCCCCCcCcCCCCCCC-----C-CCCHHHHHHHHHHHHh--------cCC----------------------------
Confidence            469999999998754321     1 2478899998864321        132                            


Q ss_pred             CCcccccccHHHhhhccCCceEEEeecCCCCCC-ccHHHHHHHHHhc-CCcEE---EEcCCCCHHHHhhcCC--C-ceEE
Q 038595          436 GEEKEGGVTLERLNEGLTPRHCALSLVGEPIMY-PEINTLVDELHRR-RISTF---LVTNAQFPDKIKLLKP--V-TQLY  507 (534)
Q Consensus       436 ~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLy-p~L~elI~~lk~~-gi~~~---LvTNGtlpe~l~~L~~--v-~qly  507 (534)
                                        ++++.|+++||||++ ..+-+.|+.+++. +++..   +-|-| .++.+++|..  + ..|.
T Consensus       142 ------------------i~nIVfmGmGEPl~N~d~vl~ai~~l~~~~~i~~r~itiST~G-~~~~i~rL~~~~v~~~La  202 (344)
T PRK14464        142 ------------------VKKVVFMGMGEPAHNLDNVLEAIDLLGTEGGIGHKNLVFSTVG-DPRVFERLPQQRVKPALA  202 (344)
T ss_pred             ------------------CCEEEEeccCcccCCHHHHHHHHHHhhchhcCCCceEEEeccc-CchHHHHHHHhcCChHHH
Confidence                              577888999999996 4677777777643 44433   33334 3555666664  1 3466


Q ss_pred             EEeeCCCHHHHHhhcCCC
Q 038595          508 VSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       508 vSlDA~~~e~y~~I~rP~  525 (534)
                      +||+|++.+.+++|.+|-
T Consensus       203 iSLhA~~~e~R~~imP~~  220 (344)
T PRK14464        203 LSLHTTRAELRARLLPRA  220 (344)
T ss_pred             HHhcCCChhHhheeCCcc
Confidence            799999999999999763

>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A

Probab=98.31  E-value=2.6e-06  Score=80.16  Aligned_cols=126  Identities=21%  Similarity=0.384  Sum_probs=70.4

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCC-----------------------c------cCcCCCCeEE
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYE-----------------------P------EDLSKEALVL  119 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d-----------------------~------~dL~~~~lvI  119 (534)
                      |++|+|-|.||||+++|+.|++.+...-  .++.....|.                       |      .|+.++++++
T Consensus         1 K~LVvYyS~tGnT~~vA~~Ia~~~gadi--~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~I~   78 (156)
T PF12682_consen    1 KTLVVYYSRTGNTKKVAEKIAEKTGADI--FEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYDTIF   78 (156)
T ss_dssp             -EEEEE--SSSHHHHHHHHHHHCCT-EE--EE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-SEEE
T ss_pred             CEEEEEECCCchHHHHHHHHHHHHCCCE--EEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccCCEEE
Confidence            4799999999999999999999874310  1111111111                       1      1345689999


Q ss_pred             EEeccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEe-cCcchHHHHHHHHHHHHHHHHHcCCceecceEE
Q 038595          120 IVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGV-GSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVE  198 (534)
Q Consensus       120 fv~STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGL-GDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~  198 (534)
                      ++.|.|. |.+|.-+..|++.            ..++|+.++.|-. |.+..    ..+.+.+.+.+   +...+.+...
T Consensus        79 lG~PvW~-~~~~~pv~tFL~~------------~~~~gK~v~~F~T~ggs~~----~~~~~~l~~~~---~~a~i~~g~~  138 (156)
T PF12682_consen   79 LGTPVWW-GTPPPPVRTFLEQ------------YDFSGKTVIPFCTSGGSGF----GNSLEDLKKLC---PGATILEGLA  138 (156)
T ss_dssp             EEEEEET-TEE-CHHHHHHHC------------TTTTTSEEEEEEE-SS--C----HHHHHHHHHH----TTSEE---EE
T ss_pred             EechHHc-CCCCHHHHHHHHh------------cCCCCCcEEEEEeeCCCCh----hHHHHHHHHHC---CCCEeecCeE
Confidence            9999998 6666667777542            2578999999964 44433    34455555443   3344544444


Q ss_pred             eeCCCCCcHHHHHHHHHHH
Q 038595          199 GDVDGGELDVVFEDWSKRV  217 (534)
Q Consensus       199 gD~~~g~~e~~f~eW~~~L  217 (534)
                      +....- .+..+.+|.++|
T Consensus       139 ~~~~~~-~~~~i~~Wl~~i  156 (156)
T PF12682_consen  139 INRGSV-SEEEIKEWLKKI  156 (156)
T ss_dssp             ---S----HHHHHHHHHHT
T ss_pred             EeCCCc-CHHHHHHHHHhC
Confidence            422211 367899998764

>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=1.2e-06  Score=86.32  Aligned_cols=39  Identities=33%  Similarity=0.507  Sum_probs=34.6

Q ss_pred             EEeec-CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHH
Q 038595          458 ALSLV-GEPIMYPEINTLVDELHRRRISTFLVTNAQFPDK  496 (534)
Q Consensus       458 alSl~-GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~  496 (534)
                      .||++ |||+++|.|.+|++.++++|+++.+.|||++|..
T Consensus        74 ~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lETngti~~~  113 (212)
T COG0602          74 GVSLTGGEPLLQPNLLELLELLKRLGFRIALETNGTIPVW  113 (212)
T ss_pred             eEEEeCCcCCCcccHHHHHHHHHhCCceEEecCCCCcccc
Confidence            34555 9998889999999999999999999999999654

>TIGR00433 bioB biotin synthetase

Probab=98.29  E-value=2.2e-06  Score=86.68  Aligned_cols=117  Identities=18%  Similarity=0.259  Sum_probs=78.4

Q ss_pred             eeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccc
Q 038595          349 CMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAID  428 (534)
Q Consensus       349 c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~  428 (534)
                      .+.+ .|..|+++|.||..+..++.+.. ...+..|++|++++.+.     ++. |.                       
T Consensus        31 ~~~i-~s~~C~~~C~fC~~~~~~~~~~~-~~~~~~~eei~~~~~~~-----~~~-g~-----------------------   79 (296)
T TIGR00433        31 IMNI-KSGGCPEDCKYCSQSSRSKTGLP-IERLKKVDEVLEEARKA-----KAA-GA-----------------------   79 (296)
T ss_pred             EEec-ccCCCCCCCcCCCCcccCCCCCc-cccCCCHHHHHHHHHHH-----HHC-CC-----------------------
Confidence            3455 47889999999988654432211 23457788998887542     221 32                       


Q ss_pred             cCCCCCCCCcccccccHHHhhhccCCceEEE-eecCCCCCCc---cHHHHHHHHHhcCCcEEEEcCCCC-HHHHhhcCC-
Q 038595          429 KQIPSNDGEEKEGGVTLERLNEGLTPRHCAL-SLVGEPIMYP---EINTLVDELHRRRISTFLVTNAQF-PDKIKLLKP-  502 (534)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~ea~~~~h~al-Sl~GEPlLyp---~L~elI~~lk~~gi~~~LvTNGtl-pe~l~~L~~-  502 (534)
                                                +.+.| +..++|...+   .+.++++.+++.|+.+ .+++|.+ ++.++.|.. 
T Consensus        80 --------------------------~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~-~~~~g~~~~e~l~~Lk~a  132 (296)
T TIGR00433        80 --------------------------TRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKT-CATLGLLDPEQAKRLKDA  132 (296)
T ss_pred             --------------------------CEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeE-EecCCCCCHHHHHHHHHc
Confidence                                      23333 3345555433   5666666667778877 4566655 788888875 


Q ss_pred             -CceEEEEeeCCCHHHHHhhcCC
Q 038595          503 -VTQLYVSVDAATKDSLKAIDRP  524 (534)
Q Consensus       503 -v~qlyvSlDA~~~e~y~~I~rP  524 (534)
                       ++.+.++++ .+++.|++|++.
T Consensus       133 G~~~v~i~~E-~~~~~~~~i~~~  154 (296)
T TIGR00433       133 GLDYYNHNLD-TSQEFYSNIIST  154 (296)
T ss_pred             CCCEEEEccc-CCHHHHhhccCC
Confidence             899999999 899999999974

Catalyzes the last step of the biotin biosynthesis pathway.

>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family

Probab=98.25  E-value=3e-05  Score=73.26  Aligned_cols=116  Identities=16%  Similarity=0.207  Sum_probs=87.8

Q ss_pred             cEEEEEECc--cchHHHHHHHHHHHHhhCCCceEEECCCCCCccCc-----------------CCCCeEEEEeccCCCCC
Q 038595           69 KGKLFFISQ--TGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDL-----------------SKEALVLIVASSWEDGK  129 (534)
Q Consensus        69 kVlI~YgSq--TGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL-----------------~~~~lvIfv~STYg~G~  129 (534)
                      +++++.||.  .++|.++++.+.+.+.+.|.+++++|+.+++..++                 ...+.+||++|.|+ +.
T Consensus         1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y~-~s   79 (171)
T TIGR03567         1 RVLTLSGSPSTPSRSSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVYK-AS   79 (171)
T ss_pred             CEEEEECCCCCCChHHHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCccc-CC
Confidence            478899995  78999999999999998899999999887654322                 24589999999999 66


Q ss_pred             CchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecce
Q 038595          130 PPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPV  196 (534)
Q Consensus       130 pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~pl  196 (534)
                      +|...+.|++|+..         ..|+++.+++++.| ..++ ++-..-..+...|..+|+..+.+.
T Consensus        80 ip~~LK~~iD~~~~---------~~l~~K~v~~~~~g-g~~~-~~~~~~~~l~~~l~~l~~~~~~~~  135 (171)
T TIGR03567        80 YSGVLKALLDLLPQ---------RALRGKVVLPIATG-GSIA-HLLAIDYALKPVLSALGARHILPG  135 (171)
T ss_pred             CCHHHHHHHHhCCh---------hhhCCCEEEEEEcC-Cchh-HHHHHHHHHHHHHHHcCCccccce
Confidence            77778999998732         35889988888877 3343 333332457888889999755443

Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).

>PLN02389 biotin synthase

Probab=98.16  E-value=3.6e-06  Score=89.75  Aligned_cols=123  Identities=15%  Similarity=0.263  Sum_probs=86.0

Q ss_pred             eeeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeecccccccccccc
Q 038595          348 RCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAI  427 (534)
Q Consensus       348 ~c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~  427 (534)
                      ..+.+ .|..|+++|.||-.......+.. .+.+-+|++|++.+.+..     .. |+..    |.+             
T Consensus        84 ~i~n~-~T~~C~~~C~fCaqs~~~~~~~~-~~~~Ls~EeIl~~a~~~~-----~~-G~~~----~~i-------------  138 (379)
T PLN02389         84 TLLSI-KTGGCSEDCSYCPQSSRYDTGVK-AQKLMSKDDVLEAAKRAK-----EA-GSTR----FCM-------------  138 (379)
T ss_pred             EEEEe-ccCCcCcCCCCCCCcccCCCCCc-ccccCCHHHHHHHHHHHH-----Hc-CCCE----EEE-------------
Confidence            34555 68889999999987532211111 244579999999876432     11 3321    111             


Q ss_pred             ccCCCCCCCCcccccccHHHhhhccCCceEEE-eecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCC-HHHHhhcCC--C
Q 038595          428 DKQIPSNDGEEKEGGVTLERLNEGLTPRHCAL-SLVGEPIMYPEINTLVDELHRRRISTFLVTNAQF-PDKIKLLKP--V  503 (534)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~al-Sl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtl-pe~l~~L~~--v  503 (534)
                                     |+             +. ...|||..+.++.++++.+|+.++.+ .+|||.+ ++.++.|..  +
T Consensus       139 ---------------vt-------------s~rg~~~e~~~~e~i~eiir~ik~~~l~i-~~s~G~l~~E~l~~LkeAGl  189 (379)
T PLN02389        139 ---------------GA-------------AWRDTVGRKTNFNQILEYVKEIRGMGMEV-CCTLGMLEKEQAAQLKEAGL  189 (379)
T ss_pred             ---------------Ee-------------cccCCCCChhHHHHHHHHHHHHhcCCcEE-EECCCCCCHHHHHHHHHcCC
Confidence                           00             00 13588888999999999999888876 4789977 788999975  9


Q ss_pred             ceEEEEeeCCCHHHHHhhcCCC
Q 038595          504 TQLYVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       504 ~qlyvSlDA~~~e~y~~I~rP~  525 (534)
                      +.+.+++|+ .++.|++|+.+.
T Consensus       190 d~~~~~LeT-s~~~y~~i~~~~  210 (379)
T PLN02389        190 TAYNHNLDT-SREYYPNVITTR  210 (379)
T ss_pred             CEEEeeecC-ChHHhCCcCCCC
Confidence            999999999 588999999764

>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein

Probab=98.16  E-value=2.8e-06  Score=79.39  Aligned_cols=52  Identities=17%  Similarity=0.084  Sum_probs=40.2

Q ss_pred             eec-CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCCCceEEEEeeCCC
Q 038595          460 SLV-GEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAAT  514 (534)
Q Consensus       460 Sl~-GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~v~qlyvSlDA~~  514 (534)
                      +++ || ++++.|.++++.+|++|+++.|.||++.++..+++++  .+.+-+|.+=
T Consensus        66 t~SGGE-l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~--~iD~l~~g~y  118 (147)
T TIGR02826        66 LFLGGE-WNREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQ--HLDYLKTGRW  118 (147)
T ss_pred             EEechh-cCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH--hCCEEEEChH
Confidence            444 99 7778999999999999999999999999887776654  2333444443

Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.

>PRK10569 NAD(P)H-dependent FMN reductase; Provisional

Probab=98.14  E-value=7.7e-05  Score=72.40  Aligned_cols=114  Identities=18%  Similarity=0.182  Sum_probs=88.3

Q ss_pred             cEEEEEECc--cchHHHHHHHHHHHHhhCCCceEEECCCCCCccCc-----------------CCCCeEEEEeccCCCCC
Q 038595           69 KGKLFFISQ--TGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDL-----------------SKEALVLIVASSWEDGK  129 (534)
Q Consensus        69 kVlI~YgSq--TGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL-----------------~~~~lvIfv~STYg~G~  129 (534)
                      +|+++.||.  .++|.++++.+.+.+.+.|.+++++|+.++++.++                 ...+.+||++|.|. |.
T Consensus         2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~-~s   80 (191)
T PRK10569          2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYK-AS   80 (191)
T ss_pred             EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccC-CC
Confidence            489999998  47899999999999999999999999988765332                 23589999999998 77


Q ss_pred             CchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595          130 PPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL  194 (534)
Q Consensus       130 pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~  194 (534)
                      +|.-.+.|++|+..         ..|+++.+++++.|.+ .+ +.-..--.+...|..|||..+.
T Consensus        81 ~pg~LKn~iD~l~~---------~~l~~K~v~iiat~G~-~~-~~~~~~~~lr~~l~~l~a~~~~  134 (191)
T PRK10569         81 FSGALKTLLDLLPE---------RALEHKVVLPLATGGS-VA-HMLAVDYALKPVLSALKAQEIL  134 (191)
T ss_pred             CCHHHHHHHHhCCh---------hhhCCCEEEEEEecCC-ch-hHHHHHHHHHHHHHHcCCeecC
Confidence            88889999999832         3689999999998733 32 2222224566788889997653

>PRK07094 biotin synthase; Provisional

Probab=98.11  E-value=1.3e-05  Score=82.38  Aligned_cols=119  Identities=20%  Similarity=0.300  Sum_probs=81.8

Q ss_pred             CeeeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccc
Q 038595          347 HRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSA  426 (534)
Q Consensus       347 ~~c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~  426 (534)
                      |.|.-+..|..|+++|.||-.+..+..  ..+.. -+|++|++.+...     .. .|+                     
T Consensus        38 ~~~~~i~~s~gC~~~C~fC~~~~~~~~--~~r~~-ls~eei~~~~~~~-----~~-~g~---------------------   87 (323)
T PRK07094         38 HLRGLIEFSNYCRNNCLYCGLRRDNKN--IERYR-LSPEEILECAKKA-----YE-LGY---------------------   87 (323)
T ss_pred             EEEEEEEECCCCCCCCEeCCcccCCCC--CcCcC-CCHHHHHHHHHHH-----HH-CCC---------------------
Confidence            345555568899999999987654321  11222 3788999876432     22 133                     


Q ss_pred             cccCCCCCCCCcccccccHHHhhhccCCceEEEeecCC-CCC-CccHHHHHHHHHhc-CCcEEEEcCCCC-HHHHhhcCC
Q 038595          427 IDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGE-PIM-YPEINTLVDELHRR-RISTFLVTNAQF-PDKIKLLKP  502 (534)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GE-PlL-yp~L~elI~~lk~~-gi~~~LvTNGtl-pe~l~~L~~  502 (534)
                                                  +.+.|+ .|+ |.+ .+++.++++.+++. ++.+.+ +.|.+ ++.++.|..
T Consensus        88 ----------------------------~~i~l~-gG~~~~~~~~~l~~l~~~i~~~~~l~i~~-~~g~~~~e~l~~Lk~  137 (323)
T PRK07094         88 ----------------------------RTIVLQ-SGEDPYYTDEKIADIIKEIKKELDVAITL-SLGERSYEEYKAWKE  137 (323)
T ss_pred             ----------------------------CEEEEe-cCCCCCCCHHHHHHHHHHHHccCCceEEE-ecCCCCHHHHHHHHH
Confidence                                        233343 465 444 35899999999985 776654 44554 788888875


Q ss_pred             --CceEEEEeeCCCHHHHHhhcCCC
Q 038595          503 --VTQLYVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       503 --v~qlyvSlDA~~~e~y~~I~rP~  525 (534)
                        ++.+.+++++.+++.|++++++.
T Consensus       138 aG~~~v~~glEs~~~~~~~~i~~~~  162 (323)
T PRK07094        138 AGADRYLLRHETADKELYAKLHPGM  162 (323)
T ss_pred             cCCCEEEeccccCCHHHHHHhCCCC
Confidence              89999999999999999999753

>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily

Probab=98.04  E-value=8.3e-05  Score=70.31  Aligned_cols=114  Identities=17%  Similarity=0.112  Sum_probs=84.1

Q ss_pred             cEEEEEECc--cchHHHHHHHHHHHHh-hCCCceEEECCCCCCc------------cC-------cCCCCeEEEEeccCC
Q 038595           69 KGKLFFISQ--TGTSKTLAKRLHALLT-SNDLLFDLVDPQTYEP------------ED-------LSKEALVLIVASSWE  126 (534)
Q Consensus        69 kVlI~YgSq--TGtTE~lAe~La~~L~-~~Gl~v~V~dL~d~d~------------~d-------L~~~~lvIfv~STYg  126 (534)
                      ||+++.||.  .++|..+|+.+.+.+. ..|.+++++|+.++++            ++       +...+.+||++|.|+
T Consensus         1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~   80 (174)
T TIGR03566         1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVYR   80 (174)
T ss_pred             CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcCc
Confidence            489999998  5899999999999986 5688999999877631            11       124689999999999


Q ss_pred             CCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595          127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL  194 (534)
Q Consensus       127 ~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~  194 (534)
                       |.+|.-.+.|++|+..         ..|+++.+++++.|....+  .......+...|.-+|+..+-
T Consensus        81 -~s~~~~LKn~lD~~~~---------~~l~~K~~~~v~~~g~~~~--~~~~~~~l~~~~~~l~~~~~~  136 (174)
T TIGR03566        81 -GSYTGLFKHLFDLVDP---------NALIGKPVLLAATGGSERH--ALMVEHQLRPLFGFFQALTLP  136 (174)
T ss_pred             -CcCcHHHHHHHHhcCH---------hHhCCCEEEEEEecCCccc--hHHHHHHHHHHHHHhCccccc
Confidence             6677778899988742         3588999999988644332  122334466777888876553

Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.

>PRK06934 flavodoxin; Provisional

Probab=98.01  E-value=3.4e-05  Score=76.93  Aligned_cols=121  Identities=14%  Similarity=0.189  Sum_probs=72.3

Q ss_pred             cchHHHHHHHHHHHHhhCCCceEEECCC--CC---------------Cc------cCcCCCCeEEEEeccCCCCCCchHH
Q 038595           78 TGTSKTLAKRLHALLTSNDLLFDLVDPQ--TY---------------EP------EDLSKEALVLIVASSWEDGKPPEAA  134 (534)
Q Consensus        78 TGtTE~lAe~La~~L~~~Gl~v~V~dL~--d~---------------d~------~dL~~~~lvIfv~STYg~G~pPdna  134 (534)
                      +|||+++|+.|++.+...-++++..+.-  ++               .|      .++..++.++|+.|.|. |.+|.-+
T Consensus        70 ~GnTk~vAe~Ia~~~gaDl~eI~~~~~Y~~~yd~~~~~a~~E~~~~~~P~L~~~~~dl~~YD~I~IG~PIWw-g~~P~~V  148 (221)
T PRK06934         70 LGSTQYVAQIIQEETGGDLFRIETVKPYPRQHDPLLKYAEQEVKEGGRPEMREKIQNLADYDQIFIGYPIWW-YKMPMVM  148 (221)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEEEccccCCCCchhhhHHHHhhhcCCCHHHHHHHHhHHhCCEEEEEcchhh-ccccHHH
Confidence            3999999999999986543333333321  11               11      23456899999999999 6666667


Q ss_pred             HHHHHHHHhhcCcccccccCCCCCeEEEEEe-cCcchHHHHHHHHHHHHHHHHHcCCceecceEEee--C-CCCCcHHHH
Q 038595          135 KFFMNWIDESANDFRVGSLLLSNCKFAVFGV-GSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGD--V-DGGELDVVF  210 (534)
Q Consensus       135 ~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGL-GDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD--~-~~g~~e~~f  210 (534)
                      ..|++.            ..|+|+.++.|.. |-+..    ......+.+.+.  +++.+.+-..+.  . .....+..+
T Consensus       149 ~tFLe~------------~d~~GK~I~pF~T~ggsg~----g~s~~~i~~l~~--~a~~v~~Gl~i~~~~~~~~~~~~~I  210 (221)
T PRK06934        149 YSFFEQ------------HDFSGKTLIPFTTHGGSRF----SDSLREIKRLQP--NAQLVTQGLAISRNDVTDDDTPKEI  210 (221)
T ss_pred             HHHHHh------------cCCCCCEEEEEEecCCCCc----cchHHHHHHHcC--CcceeccceeeecCcccccchHHHH
Confidence            777543            2578999999974 33333    234444444422  332344433322  1 111246789


Q ss_pred             HHHHHHH
Q 038595          211 EDWSKRV  217 (534)
Q Consensus       211 ~eW~~~L  217 (534)
                      .+|.+++
T Consensus       211 ~~Wl~~l  217 (221)
T PRK06934        211 INWLNTL  217 (221)
T ss_pred             HHHHHHc
Confidence            9998764

>TIGR00238 KamA family protein

Probab=98.00  E-value=1e-05  Score=84.57  Aligned_cols=65  Identities=17%  Similarity=0.212  Sum_probs=44.6

Q ss_pred             CceEEEeecCCCCCCcc--HHHHHHHHHhc----CCcEEEEcCCCCH-----HHHhhcCC--CceEEEEeeCCCHHHHH
Q 038595          454 PRHCALSLVGEPIMYPE--INTLVDELHRR----RISTFLVTNAQFP-----DKIKLLKP--VTQLYVSVDAATKDSLK  519 (534)
Q Consensus       454 ~~h~alSl~GEPlLyp~--L~elI~~lk~~----gi~~~LvTNGtlp-----e~l~~L~~--v~qlyvSlDA~~~e~y~  519 (534)
                      ++.+.||| |||++.+.  |.++++.+++.    ++.+..-||+++|     +.++.|..  +..+.++.+...+|...
T Consensus       160 i~eV~lsG-GDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei~~  237 (331)
T TIGR00238       160 IIEILISG-GDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEITE  237 (331)
T ss_pred             cCEEEEEC-CccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhCCH
Confidence            35567777 99999986  99999999885    4556666677754     44444443  56778886666555443

Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.

>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed

Probab=97.94  E-value=4.9e-05  Score=80.66  Aligned_cols=111  Identities=19%  Similarity=0.147  Sum_probs=78.2

Q ss_pred             ecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCC
Q 038595          352 ATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQI  431 (534)
Q Consensus       352 ~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~  431 (534)
                      +..|..|+++|.||--...+...    ...-+|++|++.+...     ... |                           
T Consensus        78 in~Tn~C~~~C~YC~f~~~~~~~----~~~ls~eEI~~~a~~~-----~~~-G---------------------------  120 (371)
T PRK09240         78 LYLSNYCANDCTYCGFSMSNKIK----RKTLDEEEIEREMAAI-----KKL-G---------------------------  120 (371)
T ss_pred             eEEcccccCcCCcCCCCCCCCCc----cccCCHHHHHHHHHHH-----HhC-C---------------------------
Confidence            44589999999999875443221    2457899999987643     221 3                           


Q ss_pred             CCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCc---cHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCC--CceE
Q 038595          432 PSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYP---EINTLVDELHRRRISTFLVTNAQFPDKIKLLKP--VTQL  506 (534)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp---~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~--v~ql  506 (534)
                                            ++++.|.+ |||....   ++.++++.+++.--.+.+.+|..-.+.++.|..  ++.+
T Consensus       121 ----------------------v~~i~lvg-Ge~p~~~~~e~l~~~i~~Ik~~~p~i~i~~g~lt~e~l~~Lk~aGv~r~  177 (371)
T PRK09240        121 ----------------------FEHILLLT-GEHEAKVGVDYIRRALPIAREYFSSVSIEVQPLSEEEYAELVELGLDGV  177 (371)
T ss_pred             ----------------------CCEEEEee-CCCCCCCCHHHHHHHHHHHHHhCCCceeccCCCCHHHHHHHHHcCCCEE
Confidence                                  35566666 9987754   566666666654212445556555788888876  9999


Q ss_pred             EEEeeCCCHHHHHhhc
Q 038595          507 YVSVDAATKDSLKAID  522 (534)
Q Consensus       507 yvSlDA~~~e~y~~I~  522 (534)
                      .+++++.+++.|++|+
T Consensus       178 ~i~lET~~~~~~~~i~  193 (371)
T PRK09240        178 TVYQETYNPATYAKHH  193 (371)
T ss_pred             EEEEecCCHHHHHHhC
Confidence            9999999999999998

>TIGR02351 thiH thiazole biosynthesis protein ThiH

Probab=97.91  E-value=4.8e-05  Score=80.53  Aligned_cols=110  Identities=20%  Similarity=0.180  Sum_probs=73.6

Q ss_pred             cccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCC
Q 038595          353 TPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIP  432 (534)
Q Consensus       353 ~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (534)
                      .+|..|+++|.||.....+...   + ..-++++|++.+...     ..+ |                            
T Consensus        78 ~~Tn~C~~~C~yC~~s~~~~~~---~-~~Ls~eEI~~~a~~~-----~~~-G----------------------------  119 (366)
T TIGR02351        78 YLSNYCSNKCVYCGFSMSNKIK---R-KKLNEEEIEREIEAI-----KKS-G----------------------------  119 (366)
T ss_pred             eECccccCCCCcCCCCCCCCCc---c-CcCCHHHHHHHHHHH-----HhC-C----------------------------
Confidence            4799999999999886544321   1 335788898877532     222 3                            


Q ss_pred             CCCCCcccccccHHHhhhccCCceEEEeecCCCCCC---ccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCC--CceEE
Q 038595          433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMY---PEINTLVDELHRRRISTFLVTNAQFPDKIKLLKP--VTQLY  507 (534)
Q Consensus       433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLy---p~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~--v~qly  507 (534)
                                           ++++.|. +||+..+   .+|.++++.+++..-.+.+..+-.-.+.++.|..  ++.++
T Consensus       120 ---------------------v~~i~lv-gGe~p~~~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~~~Lk~aGv~r~~  177 (366)
T TIGR02351       120 ---------------------FKEILLV-TGESEKAAGVEYIAEAIKLAREYFSSLAIEVQPLNEEEYKKLVEAGLDGVT  177 (366)
T ss_pred             ---------------------CCEEEEe-eCCCCCCCCHHHHHHHHHHHHHhCCccccccccCCHHHHHHHHHcCCCEEE
Confidence                                 2344444 3664443   2588888888875211222333333677777775  99999


Q ss_pred             EEeeCCCHHHHHhhc
Q 038595          508 VSVDAATKDSLKAID  522 (534)
Q Consensus       508 vSlDA~~~e~y~~I~  522 (534)
                      +++++.|++.|++|+
T Consensus       178 i~lET~~~~~y~~i~  192 (366)
T TIGR02351       178 VYQETYNEKKYKKHH  192 (366)
T ss_pred             EEeecCCHHHHHhcC
Confidence            999999999999998

Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.

>PRK06256 biotin synthase; Validated

Probab=97.91  E-value=3.3e-05  Score=80.00  Aligned_cols=113  Identities=12%  Similarity=0.205  Sum_probs=75.7

Q ss_pred             cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCC
Q 038595          355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSN  434 (534)
Q Consensus       355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (534)
                      |..|+++|.||..+...... ..++.+-+|++|++.+.++.+     . |+                             
T Consensus        65 s~~C~~~C~fC~~~~~~~~~-~~~~~~~s~eeI~~~~~~~~~-----~-g~-----------------------------  108 (336)
T PRK06256         65 SGLCPEDCGYCSQSAGSSAP-VYRYAWLDIEELIEAAKEAIE-----E-GA-----------------------------  108 (336)
T ss_pred             CCCCCCCCccCCCcCCCCCC-CceecCCCHHHHHHHHHHHHH-----C-CC-----------------------------
Confidence            57899999999886543211 112334689999998865422     1 32                             


Q ss_pred             CCCcccccccHHHhhhccCCceEEE-eecCCCCCC--ccHHHHHHHHHhc-CCcEEEEcCCCC-HHHHhhcCC--CceEE
Q 038595          435 DGEEKEGGVTLERLNEGLTPRHCAL-SLVGEPIMY--PEINTLVDELHRR-RISTFLVTNAQF-PDKIKLLKP--VTQLY  507 (534)
Q Consensus       435 ~~~~~~~~~~~~~~~ea~~~~h~al-Sl~GEPlLy--p~L~elI~~lk~~-gi~~~LvTNGtl-pe~l~~L~~--v~qly  507 (534)
                                          +.+.| +..++|...  +++.++++.+++. ++.+ .+++|.+ ++.++.|..  ++.+.
T Consensus       109 --------------------~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~-~~~~g~l~~e~l~~LkeaG~~~v~  167 (336)
T PRK06256        109 --------------------GTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEI-CACLGLLTEEQAERLKEAGVDRYN  167 (336)
T ss_pred             --------------------CEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcE-EecCCcCCHHHHHHHHHhCCCEEe
Confidence                                11222 333456554  4788899999876 3333 3455665 788888875  88999


Q ss_pred             EEeeCCCHHHHHhhcCCC
Q 038595          508 VSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       508 vSlDA~~~e~y~~I~rP~  525 (534)
                      +++++ +++.|++|++..
T Consensus       168 ~~lEt-s~~~~~~i~~~~  184 (336)
T PRK06256        168 HNLET-SRSYFPNVVTTH  184 (336)
T ss_pred             cCCcc-CHHHHhhcCCCC
Confidence            99999 999999999753

>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein

Probab=97.87  E-value=5.5e-05  Score=78.77  Aligned_cols=61  Identities=20%  Similarity=0.332  Sum_probs=42.6

Q ss_pred             ceEEEeecCCCCCC--ccHHHHHHHHHhcC-Cc-EEEEc-----CCCC--HHHHhhcCCC-ceEEEEeeCCCHH
Q 038595          455 RHCALSLVGEPIMY--PEINTLVDELHRRR-IS-TFLVT-----NAQF--PDKIKLLKPV-TQLYVSVDAATKD  516 (534)
Q Consensus       455 ~h~alSl~GEPlLy--p~L~elI~~lk~~g-i~-~~LvT-----NGtl--pe~l~~L~~v-~qlyvSlDA~~~e  516 (534)
                      +.+.||+ |||+++  ++|.++++.+++.+ +. +.+.|     |+++  ++.++.|... .+++||+|+..+.
T Consensus       138 ~~VilSG-GDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~  210 (321)
T TIGR03822       138 WEVILTG-GDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHAR  210 (321)
T ss_pred             cEEEEeC-CCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChh
Confidence            3455565 999997  58999999999885 32 45656     4443  5666666541 3589999997543

Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.

>PRK05660 HemN family oxidoreductase; Provisional

Probab=97.85  E-value=9.8e-05  Score=78.36  Aligned_cols=68  Identities=19%  Similarity=0.349  Sum_probs=56.6

Q ss_pred             EEeec-CCCCCC--ccHHHHHHHHHhc-----CCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCC
Q 038595          458 ALSLV-GEPIMY--PEINTLVDELHRR-----RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       458 alSl~-GEPlLy--p~L~elI~~lk~~-----gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~  525 (534)
                      +|-+. |+|++.  ..|.++++.+++.     +..+.+.||...  ++.++.|..  ++++.|+|++.+++.++.++|++
T Consensus        61 ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~  140 (378)
T PRK05660         61 SIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIH  140 (378)
T ss_pred             EEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCC
Confidence            34444 999996  4899999999983     456889999654  788887775  89999999999999999999975

>PRK00170 azoreductase; Reviewed

Probab=97.85  E-value=0.00036  Score=66.65  Aligned_cols=128  Identities=16%  Similarity=0.118  Sum_probs=87.7

Q ss_pred             cEEEEEECc--c-chHHHHHHHHHHHHhhC--CCceEEECCCCCCcc---------------------------------
Q 038595           69 KGKLFFISQ--T-GTSKTLAKRLHALLTSN--DLLFDLVDPQTYEPE---------------------------------  110 (534)
Q Consensus        69 kVlI~YgSq--T-GtTE~lAe~La~~L~~~--Gl~v~V~dL~d~d~~---------------------------------  110 (534)
                      +|+|++||-  . |+|.++|+.+.+.|.+.  |.+++++||.+.+..                                 
T Consensus         3 kil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~   82 (201)
T PRK00170          3 KVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDELLE   82 (201)
T ss_pred             eEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHH
Confidence            589999996  3 88999999999999987  889999999765421                                 


Q ss_pred             CcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcccc----cccCCCCCeEEEEEe-cCcchHHHHHHHHHHHHHHH
Q 038595          111 DLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRV----GSLLLSNCKFAVFGV-GSKSYEKTFNMVAKDLSKKM  185 (534)
Q Consensus       111 dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv----~~~~Lkgl~yAVFGL-GDs~Y~e~Fc~aAK~LDk~L  185 (534)
                      .+...+.+||++|.|. +.+|.-.+.|++++.....-|+.    ....|+++++.++.. |...-...+..+...+...|
T Consensus        83 ~i~~AD~iV~~sP~y~-~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~~~  161 (201)
T PRK00170         83 EFLAADKIVIAAPMYN-FSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKTFL  161 (201)
T ss_pred             HHHHCCEEEEeecccc-cCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHHHH
Confidence            0234589999999999 55666688888887543212221    123578898888875 43210001234456677788


Q ss_pred             HHcCCceecceE
Q 038595          186 RELGAGEVLPVV  197 (534)
Q Consensus       186 ~kLGA~rV~plg  197 (534)
                      .-+|.+.+....
T Consensus       162 ~~~G~~~~~~~~  173 (201)
T PRK00170        162 GFIGITDVEFVF  173 (201)
T ss_pred             HhcCCCceEEEE
Confidence            888987654443

>PRK01355 azoreductase; Reviewed

Probab=97.78  E-value=0.00066  Score=65.78  Aligned_cols=154  Identities=14%  Similarity=0.051  Sum_probs=100.9

Q ss_pred             cEEEEEECcc----chHHHHHHHHHHHHhhC--CCceEEECCCCCCcc----------------C-------cCCCCeEE
Q 038595           69 KGKLFFISQT----GTSKTLAKRLHALLTSN--DLLFDLVDPQTYEPE----------------D-------LSKEALVL  119 (534)
Q Consensus        69 kVlI~YgSqT----GtTE~lAe~La~~L~~~--Gl~v~V~dL~d~d~~----------------d-------L~~~~lvI  119 (534)
                      +|+|+.||-.    |+|..+|+.+.+.+.+.  +..++++||.+.++.                +       +...+.+|
T Consensus         3 kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV   82 (199)
T PRK01355          3 KVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDKVV   82 (199)
T ss_pred             eEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCEEE
Confidence            5899999984    88999999999999874  588999999876531                1       12458999


Q ss_pred             EEeccCCCCCCchHHHHHHHHHHhhcCccccc-------ccCCCCCeEEEEE-ecCcchHHHHHHHHHHHHHHHHHcCCc
Q 038595          120 IVASSWEDGKPPEAAKFFMNWIDESANDFRVG-------SLLLSNCKFAVFG-VGSKSYEKTFNMVAKDLSKKMRELGAG  191 (534)
Q Consensus       120 fv~STYg~G~pPdna~~Fle~L~e~~~DFRv~-------~~~Lkgl~yAVFG-LGDs~Y~e~Fc~aAK~LDk~L~kLGA~  191 (534)
                      |++|.|. +.+|.-.+.|++++.....-|...       ...|++++..|+. .|.......|..+...+...+.-+|.+
T Consensus        83 ~~sP~y~-~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G~~  161 (199)
T PRK01355         83 ISCPMTN-FNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLGAK  161 (199)
T ss_pred             EEcCccc-cCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcCCC
Confidence            9999999 566777899999986542222211       1247788777764 443221001345566788888889998


Q ss_pred             eecceEEeeCCCCCc-HHHHHHHHHHHHHHHHh
Q 038595          192 EVLPVVEGDVDGGEL-DVVFEDWSKRVVAILKS  223 (534)
Q Consensus       192 rV~plg~gD~~~g~~-e~~f~eW~~~L~~~L~~  223 (534)
                      .+............+ .....+|.+.-.+.+.+
T Consensus       162 ~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~  194 (199)
T PRK01355        162 VVDSILLAGTKVEPLSNKTPKEIVEEFDKEIIE  194 (199)
T ss_pred             ceeEEEEecccCCccccccHHHHHHHHHHHHHH
Confidence            766554444332111 02266666665555543

>PRK09739 hypothetical protein; Provisional

Probab=97.74  E-value=0.00092  Score=64.53  Aligned_cols=151  Identities=11%  Similarity=0.108  Sum_probs=96.4

Q ss_pred             cEEEEEECc--cchHHHHHHHHHHHHhhCCCceEEECCCCCCcc---------------------------CcCCCCeEE
Q 038595           69 KGKLFFISQ--TGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPE---------------------------DLSKEALVL  119 (534)
Q Consensus        69 kVlI~YgSq--TGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~---------------------------dL~~~~lvI  119 (534)
                      +++|+++|-  .++|..+++.+.+.+.+.|.+++++||.+.+++                           .+...+.+|
T Consensus         5 kiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV   84 (199)
T PRK09739          5 RIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALV   84 (199)
T ss_pred             eEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEE
Confidence            589999987  577899999999999999999999998764320                           123468999


Q ss_pred             EEeccCCCCCCchHHHHHHHHHHhhcCccccc-ccCCCCCeEEEEEe-cCcc--hHH-HHHH-HHHHHH-HHHHHcCCce
Q 038595          120 IVASSWEDGKPPEAAKFFMNWIDESANDFRVG-SLLLSNCKFAVFGV-GSKS--YEK-TFNM-VAKDLS-KKMRELGAGE  192 (534)
Q Consensus       120 fv~STYg~G~pPdna~~Fle~L~e~~~DFRv~-~~~Lkgl~yAVFGL-GDs~--Y~e-~Fc~-aAK~LD-k~L~kLGA~r  192 (534)
                      |++|-|. +.+|.-.+.|++++-...  |..+ ...|.+++..++.. |.+.  |.. .|.. .-..+. ..+.-+|.+.
T Consensus        85 ~~~P~y~-~~~Pa~LK~~iD~v~~~g--~~y~~~~~l~~k~~~~v~t~g~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~~  161 (199)
T PRK09739         85 FVFPLWW-YSFPAMLKGYIDRVWNNG--LAYGDGHKLPFNKVRWVALVGGSKESFVKRGWEKNMSDYLNVGMASYLGIED  161 (199)
T ss_pred             EECchhh-hcchHHHHHHHHHHcccc--ccccCCccCCCCeEEEEEecCCChHHhcccccccHHHHHHHhhhhhcCCccc
Confidence            9999999 556666788887764322  3222 23578888777654 4332  110 1222 223344 4455678766


Q ss_pred             ecceEEeeCC-----CCCcHHHHHHHHHHHHHHHHh
Q 038595          193 VLPVVEGDVD-----GGELDVVFEDWSKRVVAILKS  223 (534)
Q Consensus       193 V~plg~gD~~-----~g~~e~~f~eW~~~L~~~L~~  223 (534)
                      +-+...+...     +. ..+..+.|.+++......
T Consensus       162 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~  196 (199)
T PRK09739        162 SDVTFLYNTLVFDGEEL-HASHYQSLLSQAREMVDA  196 (199)
T ss_pred             cceEEEecccccccccC-CHHHHHHHHHHHHHHHHH
Confidence            5433333332     22 245678888887766543

>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein

Probab=97.71  E-value=2.6e-05  Score=81.29  Aligned_cols=65  Identities=17%  Similarity=0.196  Sum_probs=40.6

Q ss_pred             CceEEEeecCCCCCCcc--HHHHHHHHHhcCC--cEEEE-------cCCCCHHHHhhcCC--CceE-EEEeeCCCHHHHH
Q 038595          454 PRHCALSLVGEPIMYPE--INTLVDELHRRRI--STFLV-------TNAQFPDKIKLLKP--VTQL-YVSVDAATKDSLK  519 (534)
Q Consensus       454 ~~h~alSl~GEPlLyp~--L~elI~~lk~~gi--~~~Lv-------TNGtlpe~l~~L~~--v~ql-yvSlDA~~~e~y~  519 (534)
                      ++.+.||| |||++.++  |.++++.+.....  .+.+-       +|--.++.++.|..  +..+ .+|+|.+. |.+.
T Consensus       143 i~~VvltG-GEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~-Ei~d  220 (321)
T TIGR03821       143 INEVILSG-GDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHAN-EIDA  220 (321)
T ss_pred             CCEEEEeC-cccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChH-hCcH
Confidence            45677898 99999987  9999988776421  23333       34222555555543  3344 46999984 6554


Q ss_pred             h
Q 038595          520 A  520 (534)
Q Consensus       520 ~  520 (534)
                      .
T Consensus       221 ~  221 (321)
T TIGR03821       221 E  221 (321)
T ss_pred             H
Confidence            4

Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.

>PRK09249 coproporphyrinogen III oxidase; Provisional

Probab=97.67  E-value=0.00021  Score=77.52  Aligned_cols=68  Identities=16%  Similarity=0.243  Sum_probs=56.3

Q ss_pred             EEeec-CCCCCC--ccHHHHHHHHHhc-----CCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCC
Q 038595          458 ALSLV-GEPIMY--PEINTLVDELHRR-----RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       458 alSl~-GEPlLy--p~L~elI~~lk~~-----gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~  525 (534)
                      +|.+. |+|++.  ++|.++++.+++.     +..+.+.||+..  ++.++.|..  +..|.|+|++.+++.++.++|..
T Consensus       105 ~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~  184 (453)
T PRK09249        105 QLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQ  184 (453)
T ss_pred             EEEECCcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCC
Confidence            34443 999985  5999999999875     346889999865  777877775  89999999999999999999974

>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase

Probab=97.64  E-value=0.00036  Score=73.38  Aligned_cols=67  Identities=18%  Similarity=0.240  Sum_probs=54.7

Q ss_pred             Eeec-CCCCCC--ccHHHHHHHHHhc-----CCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCC
Q 038595          459 LSLV-GEPIMY--PEINTLVDELHRR-----RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       459 lSl~-GEPlLy--p~L~elI~~lk~~-----gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~  525 (534)
                      |-+. |+|++.  ++|.++++.+++.     ++.+.+.||+..  ++.++.|..  ++.+.|+|++.+++.++.+.|+.
T Consensus        55 i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~  133 (360)
T TIGR00539        55 IFIGGGTPNTLSVEAFERLFESIYQHASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQH  133 (360)
T ss_pred             EEeCCCchhcCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCC
Confidence            4444 999985  5899999888753     456889999875  677777765  89999999999999999999875

Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.

>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase

Probab=97.60  E-value=0.00029  Score=76.20  Aligned_cols=60  Identities=18%  Similarity=0.309  Sum_probs=41.7

Q ss_pred             eEEEeecCCCCCCcc--HHHHHHHHHhc-CCc-EEEEcC-----CCC--HHHHhhcCC--CceEEEEeeCCCHHH
Q 038595          456 HCALSLVGEPIMYPE--INTLVDELHRR-RIS-TFLVTN-----AQF--PDKIKLLKP--VTQLYVSVDAATKDS  517 (534)
Q Consensus       456 h~alSl~GEPlLyp~--L~elI~~lk~~-gi~-~~LvTN-----Gtl--pe~l~~L~~--v~qlyvSlDA~~~e~  517 (534)
                      .+-||+ |||++.+.  |..+++.|++. ++. +.+-||     +++  ++.++.|..  ..++.+++|.+ +|.
T Consensus       158 ~VlLSG-GDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp-~Ei  230 (417)
T TIGR03820       158 DVLLSG-GDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHP-REI  230 (417)
T ss_pred             EEEEeC-CccccCChHHHHHHHHHHhhcCCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCCh-HhC
Confidence            344443 99999876  77788999987 776 778888     554  555555543  35677888887 343

This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.

>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase

Probab=97.60  E-value=0.00034  Score=75.94  Aligned_cols=64  Identities=19%  Similarity=0.298  Sum_probs=54.2

Q ss_pred             cCCCCC--CccHHHHHHHHHhc-----CCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCC
Q 038595          462 VGEPIM--YPEINTLVDELHRR-----RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       462 ~GEPlL--yp~L~elI~~lk~~-----gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~  525 (534)
                      .|+|++  .++|.++++.+++.     +..+.+.||+..  ++.++.|..  +..+.|+|++.+++.++.++|+.
T Consensus       110 GGtP~~l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~  184 (455)
T TIGR00538       110 GGTPTYLSPEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQ  184 (455)
T ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCC
Confidence            399996  46999999999984     456888999865  777877775  89999999999999999999974

This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.

>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold

Probab=97.60  E-value=0.0014  Score=62.87  Aligned_cols=152  Identities=17%  Similarity=0.135  Sum_probs=104.7

Q ss_pred             cEEEEEECccc---hHHHHHHHHHHHHhhCC-CceEEECCCCC--------------C----c---------cCcCCCCe
Q 038595           69 KGKLFFISQTG---TSKTLAKRLHALLTSND-LLFDLVDPQTY--------------E----P---------EDLSKEAL  117 (534)
Q Consensus        69 kVlI~YgSqTG---tTE~lAe~La~~L~~~G-l~v~V~dL~d~--------------d----~---------~dL~~~~l  117 (534)
                      +|+|+++|-.+   ++.++|+.+.+.+++.+ .+++++||.+.              .    .         +.|...+.
T Consensus         2 kiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL~~~~~p~l~~~~~~~~~~~~~~~~~d~~~~~~~~l~~AD~   81 (199)
T PF02525_consen    2 KILVINASPRPEGSFSRALADAFLEGLQEAGPHEVEIRDLYEEFLPVLDSECFAAFRTYEQGPAIDVQSEQIEELLWADH   81 (199)
T ss_dssp             EEEEEE--SSTTTSHHHHHHHHHHHHHHHHTTSEEEEEETTTTT--SSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHSSE
T ss_pred             EEEEEEcCCCCccCHHHHHHHHHHHHHHHcCCCEEEEEECcccccccchHHHHHhhhhhhhhhhhhHHHHHHHHHHHcCc
Confidence            58999999887   58999999999999999 89999999884              0    0         22345689


Q ss_pred             EEEEeccCCCCCCchHHHHHHHHHHhhcCcc-c-----ccccCCCCCeEEEE-EecCcchH--------HHHHHHHHHHH
Q 038595          118 VLIVASSWEDGKPPEAAKFFMNWIDESANDF-R-----VGSLLLSNCKFAVF-GVGSKSYE--------KTFNMVAKDLS  182 (534)
Q Consensus       118 vIfv~STYg~G~pPdna~~Fle~L~e~~~DF-R-----v~~~~Lkgl~yAVF-GLGDs~Y~--------e~Fc~aAK~LD  182 (534)
                      +||+.|.|..| +|.-.+.|++.+-....=| .     .....|+|+++.++ ..|...+.        ..+..+...+.
T Consensus        82 iV~~~Pl~~~~-~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~~~  160 (199)
T PF02525_consen   82 IVFAFPLYWFS-MPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPYLR  160 (199)
T ss_dssp             EEEEEEEBTTB-C-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHHHH
T ss_pred             ceEeccceecc-cChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHHHHH
Confidence            99999999955 5556777777763222112 0     12457889887766 46655321        13455666688


Q ss_pred             HHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHH
Q 038595          183 KKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAIL  221 (534)
Q Consensus       183 k~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L  221 (534)
                      ..+.-+|.+.+-.....+....+.++.++++.+++.+.|
T Consensus       161 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (199)
T PF02525_consen  161 GILKFCGIKDVESFSFEGVDNPDREEALEKALERAAEHL  199 (199)
T ss_dssp             HHHHHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCceeeEEEEeCCCCCChHHHHHHHHHHHHhhC
Confidence            888889999997766655543233677888888887765

The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....

>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional

Probab=97.55  E-value=0.00057  Score=72.96  Aligned_cols=72  Identities=19%  Similarity=0.212  Sum_probs=54.8

Q ss_pred             CCceEEEeecCCCCC-CccHHHHHHHHHhc---CC---cEEEEcCCCCHHHHhhcCC---CceEEEEeeCCCHHHHHhhc
Q 038595          453 TPRHCALSLVGEPIM-YPEINTLVDELHRR---RI---STFLVTNAQFPDKIKLLKP---VTQLYVSVDAATKDSLKAID  522 (534)
Q Consensus       453 ~~~h~alSl~GEPlL-yp~L~elI~~lk~~---gi---~~~LvTNGtlpe~l~~L~~---v~qlyvSlDA~~~e~y~~I~  522 (534)
                      +++++.+.++|||++ |..+.+.|+.+...   ++   .+.+=|-|-.|.+ ++|..   --.|.|||.|++.+.-++|-
T Consensus       168 ~i~NIVfMGMGEPL~NydnV~~ai~il~d~~g~~is~R~ITVST~Givp~I-~~la~~~~~v~LAiSLHA~~~e~R~~lm  246 (371)
T PRK14461        168 RVTNLVFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGI-RRLANERLPINLAISLHAPDDALRSELM  246 (371)
T ss_pred             ceeeEEEEccCCchhhHHHHHHHHHHhcCccccCcCCCceEEEeecchhHH-HHHHhcccCceEEEEeCCCCHHHHHHhc
Confidence            378999999999999 57899999999653   44   3677788865543 33332   25699999999999988887


Q ss_pred             CCCC
Q 038595          523 RPLF  526 (534)
Q Consensus       523 rP~~  526 (534)
                       |.-
T Consensus       247 -Pin  249 (371)
T PRK14461        247 -PVN  249 (371)
T ss_pred             -Ccc
Confidence             643

>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional

Probab=97.53  E-value=8.5e-05  Score=69.72  Aligned_cols=68  Identities=16%  Similarity=0.154  Sum_probs=41.1

Q ss_pred             EEEeecCCCCCCccHHHHHH---HHHhc--CCcEEEEcCCCCHHHHh----hcCCCceEEEEeeCCCHHHHHhhcCCCCC
Q 038595          457 CALSLVGEPIMYPEINTLVD---ELHRR--RISTFLVTNAQFPDKIK----LLKPVTQLYVSVDAATKDSLKAIDRPLFG  527 (534)
Q Consensus       457 ~alSl~GEPlLyp~L~elI~---~lk~~--gi~~~LvTNGtlpe~l~----~L~~v~qlyvSlDA~~~e~y~~I~rP~~~  527 (534)
                      ++|| .|||++++.+.++++   .+|+.  +..+ +++||.+.+.+.    +++  +.+-|-||++-.+..+...++..+
T Consensus        69 vt~s-GGEPl~~~~~~~l~~l~~~~k~~~~~~~i-~~~tGy~~eel~~~~~~~l--~~~DvlvDG~~~~~~~~~~~~~~G  144 (154)
T PRK11121         69 LSLS-GGDPLHPQNVPDILKLVQRVKAECPGKDI-WVWTGYKLDELNAAQRQVV--DLIDVLVDGKFVQDLADPSLIWRG  144 (154)
T ss_pred             EEEE-CCCccchhhHHHHHHHHHHHHHHCCCCCE-EEecCCCHHHHHHHHHHHH--hhCCEEEechhhhhccccCCCCCC
Confidence            3443 389999765555554   44443  3444 678998855432    233  345588999876666666655444


Q ss_pred             c
Q 038595          528 D  528 (534)
Q Consensus       528 ~  528 (534)
                      .
T Consensus       145 S  145 (154)
T PRK11121        145 S  145 (154)
T ss_pred             C
Confidence            3

>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]

Probab=97.53  E-value=0.00012  Score=78.98  Aligned_cols=82  Identities=24%  Similarity=0.308  Sum_probs=70.7

Q ss_pred             ccHHHhhhcc------C-CceEEEeec-CCCCCCccHHHHHHHHHhcCCc-EEEEcCCCC----HHHHhhcCC--CceEE
Q 038595          443 VTLERLNEGL------T-PRHCALSLV-GEPIMYPEINTLVDELHRRRIS-TFLVTNAQF----PDKIKLLKP--VTQLY  507 (534)
Q Consensus       443 ~~~~~~~ea~------~-~~h~alSl~-GEPlLyp~L~elI~~lk~~gi~-~~LvTNGtl----pe~l~~L~~--v~qly  507 (534)
                      .+.|.+++++      + .-+.||-++ ||||+..+|.|+|+.+++.|+. |-+.|||-.    |+..++|..  +..||
T Consensus        91 pt~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTvr~DL~eiv~~a~e~g~~hVqinTnGirlA~~~~~~~~l~~ag~~tvY  170 (475)
T COG1964          91 PTLEQIREMLRNLKKEHPVGANAVQFTGGEPTLRDDLIEIIKIAREEGYDHVQLNTNGIRLAFDPEYVKKLREAGVNTVY  170 (475)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCceeEecCCCccchhhHHHHHHHHhhcCccEEEEccCceeeccCHHHHHHHHhcCCcEEE
Confidence            6788888776      2 466899998 9999999999999999999995 999999975    777878875  88999


Q ss_pred             EEeeCCCHHHHHhhcCC
Q 038595          508 VSVDAATKDSLKAIDRP  524 (534)
Q Consensus       508 vSlDA~~~e~y~~I~rP  524 (534)
                      .|.|+.++++|.++..|
T Consensus       171 lsFDG~~e~~~~~~~~e  187 (475)
T COG1964         171 LSFDGVTPKTNWKNHWE  187 (475)
T ss_pred             EecCCCCCCchhhHhhh
Confidence            99999999998887444

>PRK13347 coproporphyrinogen III oxidase; Provisional

Probab=97.51  E-value=0.00065  Score=73.85  Aligned_cols=70  Identities=16%  Similarity=0.199  Sum_probs=57.4

Q ss_pred             EEEeec-CCCCCC--ccHHHHHHHHHhc-----CCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCC
Q 038595          457 CALSLV-GEPIMY--PEINTLVDELHRR-----RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRP  524 (534)
Q Consensus       457 ~alSl~-GEPlLy--p~L~elI~~lk~~-----gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP  524 (534)
                      -.|.+. |+|++.  ++|.++++.+++.     +..+.+.||...  ++.++.|..  ++.+.|+|++.+++.++.++|+
T Consensus       105 ~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~  184 (453)
T PRK13347        105 SQLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRI  184 (453)
T ss_pred             EEEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCC
Confidence            345555 999985  5999999999874     345778899864  778877775  8999999999999999999997


Q ss_pred             CC
Q 038595          525 LF  526 (534)
Q Consensus       525 ~~  526 (534)
                      ..
T Consensus       185 ~~  186 (453)
T PRK13347        185 QP  186 (453)
T ss_pred             CC
Confidence            53

>PRK08446 coproporphyrinogen III oxidase; Provisional

Probab=97.37  E-value=0.0011  Score=69.58  Aligned_cols=69  Identities=16%  Similarity=0.142  Sum_probs=55.2

Q ss_pred             EEeec-CCCCCC-c-cHHHHHHHHHhc---CCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCC
Q 038595          458 ALSLV-GEPIMY-P-EINTLVDELHRR---RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLF  526 (534)
Q Consensus       458 alSl~-GEPlLy-p-~L~elI~~lk~~---gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~  526 (534)
                      +|.+. |+|++- | ++.++++.+++.   +..+.+.+|...  ++.++.|..  ++.+.|.|++.+++..+.+.|++.
T Consensus        54 ~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~  132 (350)
T PRK08446         54 SVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHS  132 (350)
T ss_pred             EEEECCCccccCCHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC
Confidence            34444 899864 4 689999988864   456889999864  788887775  899999999999999999999753

>PRK08508 biotin synthase; Provisional

Probab=97.35  E-value=0.00076  Score=68.93  Aligned_cols=60  Identities=15%  Similarity=0.238  Sum_probs=46.1

Q ss_pred             ccHHHHHHHHHhcCCcEEE-EcCCCC-HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCCCchhhh
Q 038595          469 PEINTLVDELHRRRISTFL-VTNAQF-PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLFGDFWER  532 (534)
Q Consensus       469 p~L~elI~~lk~~gi~~~L-vTNGtl-pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~~~~w~~  532 (534)
                      .++.++++.+|+.+..+.+ .+||.+ ++.+++|.+  ++.+++.+++. ++.|.+++..   .-|+.
T Consensus        75 e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~-~~~~~~i~~~---~~~~~  138 (279)
T PRK08508         75 EYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETS-KEFFPKICTT---HTWEE  138 (279)
T ss_pred             HHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccch-HHHhcCCCCC---CCHHH
Confidence            4678888999987655554 588887 889999975  89999999995 6788888753   34654

>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ

Probab=97.30  E-value=0.0017  Score=70.70  Aligned_cols=115  Identities=18%  Similarity=0.291  Sum_probs=77.0

Q ss_pred             cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCC
Q 038595          355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSN  434 (534)
Q Consensus       355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (534)
                      |.-|+++|.||-.+.+. .+..|  ...+|+.|++++..++    +.+.|+    ..|.|.|                  
T Consensus       203 sRGCp~~C~FC~~~~~~-~g~~~--r~rs~e~V~~Ei~~~~----~~~~~~----~~i~f~D------------------  253 (472)
T TIGR03471       203 GRGCPSKCTFCLWPQTV-GGHRY--RTRSAESVIEEVKYAL----ENFPEV----REFFFDD------------------  253 (472)
T ss_pred             cCCCCCCCCCCCCCccC-CCCce--EeCCHHHHHHHHHHHH----HhcCCC----cEEEEeC------------------
Confidence            55699999999654321 12334  4568999999886543    223232    2222211                  


Q ss_pred             CCCcccccccHHHhhhccCCceEEEeecCCCCCC-ccHHHHHHHHHhcCCcEEEEcCCCC-HHHHhhcCC--CceEEEEe
Q 038595          435 DGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMY-PEINTLVDELHRRRISTFLVTNAQF-PDKIKLLKP--VTQLYVSV  510 (534)
Q Consensus       435 ~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLy-p~L~elI~~lk~~gi~~~LvTNGtl-pe~l~~L~~--v~qlyvSl  510 (534)
                                                  +-++.. +++.+|++.+++.|++....+...+ ++.++.|..  +..+.+.+
T Consensus       254 ----------------------------d~f~~~~~~~~~l~~~l~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~v~iGi  305 (472)
T TIGR03471       254 ----------------------------DTFTDDKPRAEEIARKLGPLGVTWSCNARANVDYETLKVMKENGLRLLLVGY  305 (472)
T ss_pred             ----------------------------CCCCCCHHHHHHHHHHHhhcCceEEEEecCCCCHHHHHHHHHcCCCEEEEcC
Confidence                                        222232 4788899999988887665554444 777777765  78999999


Q ss_pred             eCCCHHHHHhhcCCCC
Q 038595          511 DAATKDSLKAIDRPLF  526 (534)
Q Consensus       511 DA~~~e~y~~I~rP~~  526 (534)
                      ++.+++.+++++++..
T Consensus       306 ES~s~~~L~~~~K~~~  321 (472)
T TIGR03471       306 ESGDQQILKNIKKGLT  321 (472)
T ss_pred             CCCCHHHHHHhcCCCC
Confidence            9999999999998754

One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.

>PRK08208 coproporphyrinogen III oxidase; Validated

Probab=97.27  E-value=0.0016  Score=70.43  Aligned_cols=66  Identities=27%  Similarity=0.405  Sum_probs=53.7

Q ss_pred             ecCCCCCCc--cHHHHHHHHHhc-C-----CcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCC
Q 038595          461 LVGEPIMYP--EINTLVDELHRR-R-----ISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLF  526 (534)
Q Consensus       461 l~GEPlLyp--~L~elI~~lk~~-g-----i~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~  526 (534)
                      +.|+|++.+  +|.+|++.+++. +     +.+.+.||...  ++.++.|..  +++|.|.|++.+.+..+.+.|+..
T Consensus        98 GGGTPs~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~  175 (430)
T PRK08208         98 GGGTPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQK  175 (430)
T ss_pred             cCCccccCCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCC
Confidence            459999974  788999888764 3     34778899764  777877775  899999999999999999999753

>TIGR02690 resist_ArsH arsenical resistance protein ArsH

Probab=97.26  E-value=0.0055  Score=61.19  Aligned_cols=118  Identities=18%  Similarity=0.099  Sum_probs=86.2

Q ss_pred             CcEEEEEECccc--hHHHHHHHHHHHHhhCCCceEEECCCCCCccC-----c----------CCCCeEEEEeccCCCCCC
Q 038595           68 NKGKLFFISQTG--TSKTLAKRLHALLTSNDLLFDLVDPQTYEPED-----L----------SKEALVLIVASSWEDGKP  130 (534)
Q Consensus        68 ~kVlI~YgSqTG--tTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d-----L----------~~~~lvIfv~STYg~G~p  130 (534)
                      .+|+++.||.--  ++..+|+.+.+.+.+.|++++++|+.+++.-+     .          ...+.+||++|-|+ +.+
T Consensus        27 ~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEYn-~si  105 (219)
T TIGR02690        27 PRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPERH-GAI  105 (219)
T ss_pred             CEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCccc-cCc
Confidence            369999998743  45679999999998789999999998765321     1          13579999999999 666


Q ss_pred             chHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCcee
Q 038595          131 PEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEV  193 (534)
Q Consensus       131 Pdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV  193 (534)
                      |...+..++||.....|    ...+.++.++|+|..-...+   -.+...+...|..+|+..+
T Consensus       106 pg~LKNaiDwls~~~~~----~~~~~~KpvaivgaSgg~~g---~ra~~~LR~vl~~l~a~v~  161 (219)
T TIGR02690       106 TGSQKDQIDWIPLSVGP----VRPTQGKTLAVMQVSGGSQS---FNAVNILRRLGRWMRMPTI  161 (219)
T ss_pred             CHHHHHHHHhcccCccc----ccccCCCcEEEEEeCCcHhH---HHHHHHHHHHHHHCCCccc
Confidence            77789999998653211    13689999999986311111   3467778888999998544

Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.

>PRK05628 coproporphyrinogen III oxidase; Validated

Probab=97.23  E-value=0.0023  Score=67.72  Aligned_cols=65  Identities=17%  Similarity=0.310  Sum_probs=53.3

Q ss_pred             cCCCCCC--ccHHHHHHHHHhc-CC----cEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCC
Q 038595          462 VGEPIMY--PEINTLVDELHRR-RI----STFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLF  526 (534)
Q Consensus       462 ~GEPlLy--p~L~elI~~lk~~-gi----~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~  526 (534)
                      .|.|++.  +.|.++++.+++. ++    .+.+.+|...  ++.++.|..  ++++.+.|++.+++.++.++|+..
T Consensus        67 GGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s  142 (375)
T PRK05628         67 GGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHT  142 (375)
T ss_pred             CCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC
Confidence            4999985  4899999999874 44    3677788664  677777764  899999999999999999999854

>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional

Probab=97.22  E-value=0.00086  Score=72.76  Aligned_cols=125  Identities=19%  Similarity=0.309  Sum_probs=83.3

Q ss_pred             cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeee--ccccccccccccccCCC
Q 038595          355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLL--DFFYFGTVSSAIDKQIP  432 (534)
Q Consensus       355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~--~~~~~~~~~~~~~~~~~  432 (534)
                      +.-|+++|.||-.+...  | .  +...+|+.|++++..+     .. .|    +.+|+|+  |...||.     |.   
T Consensus       146 srGCp~~CsFC~ip~~~--G-~--~rsr~~e~Vv~Ei~~l-----~~-~g----~kei~l~~~d~~~yg~-----d~---  202 (440)
T PRK14862        146 SEGCNHRCTFCIIPSMR--G-D--LVSRPIGDVLREAERL-----VK-AG----VKELLVISQDTSAYGV-----DV---  202 (440)
T ss_pred             ccCCCCCCccCCccccc--C-C--ccccCHHHHHHHHHHH-----HH-CC----CceEEEEecChhhhcc-----cc---
Confidence            34599999999876443  2 2  3468899999988543     22 13    5678886  6555552     00   


Q ss_pred             CCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhcCCcEE---EEcCCCCHHHHhhcCC--C-ceE
Q 038595          433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTF---LVTNAQFPDKIKLLKP--V-TQL  506 (534)
Q Consensus       433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~---LvTNGtlpe~l~~L~~--v-~ql  506 (534)
                                            .+-.--+.|+|+ .+++.+|++.+++.|+.+.   +..|+..++.++.+..  + ..+
T Consensus       203 ----------------------~~~~~~~~~~~~-~~~~~~Ll~~l~~~~~~~r~~~~~p~~~~dell~~m~~g~~~~~l  259 (440)
T PRK14862        203 ----------------------KYRTGFWNGRPV-KTRMTDLCEALGELGAWVRLHYVYPYPHVDEVIPLMAEGKILPYL  259 (440)
T ss_pred             ----------------------ccccccccccch-hhHHHHHHHHHHhcCCEEEEecCCCCcCCHHHHHHHhcCCCcccc
Confidence                                  000001347888 7899999999999887433   3445544666666553  2 267


Q ss_pred             EEEeeCCCHHHHHhhcCCC
Q 038595          507 YVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       507 yvSlDA~~~e~y~~I~rP~  525 (534)
                      .|++++.+.+.+++++|+.
T Consensus       260 ~IglESgs~~vLk~m~r~~  278 (440)
T PRK14862        260 DIPFQHASPRVLKRMKRPA  278 (440)
T ss_pred             ccccccCCHHHHHhcCCCC
Confidence            8899999999999999974

>PRK13556 azoreductase; Provisional

Probab=97.15  E-value=0.015  Score=56.53  Aligned_cols=129  Identities=16%  Similarity=0.198  Sum_probs=89.4

Q ss_pred             cEEEEEECcc----chHHHHHHHHHHHHhhC--CCceEEECCCCCCc-----c-----------------------C---
Q 038595           69 KGKLFFISQT----GTSKTLAKRLHALLTSN--DLLFDLVDPQTYEP-----E-----------------------D---  111 (534)
Q Consensus        69 kVlI~YgSqT----GtTE~lAe~La~~L~~~--Gl~v~V~dL~d~d~-----~-----------------------d---  111 (534)
                      +++|+.+|--    ++|.++++.+.+.+.+.  |.+|+++||.+.++     +                       +   
T Consensus         3 kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (208)
T PRK13556          3 KVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVADK   82 (208)
T ss_pred             eEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHHHH
Confidence            5899999964    78899999999999864  78999999874321     0                       0   


Q ss_pred             ----cCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcccccc----cCCCCCeEEEEEe-cCcchH----HHHHHHH
Q 038595          112 ----LSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGS----LLLSNCKFAVFGV-GSKSYE----KTFNMVA  178 (534)
Q Consensus       112 ----L~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~~----~~Lkgl~yAVFGL-GDs~Y~----e~Fc~aA  178 (534)
                          +...+.+||++|-|+ +.+|.-.+.+++++.....=|+.+.    ..|+++++.|+.. |. .|.    +.+..+.
T Consensus        83 ~~~~l~~AD~iVi~~P~yn-~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg-~~~~~~~~~~~~~~  160 (208)
T PRK13556         83 YLNQFLEADKVVFAFPLWN-FTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGG-VYSEGPAAEVEMAV  160 (208)
T ss_pred             HHHHHHHCCEEEEeccccc-cCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCC-CCCCCCchhhhccH
Confidence                123579999999999 5567778888888865432232222    3588999888865 32 231    2455566


Q ss_pred             HHHHHHHHHcCCceecceEEee
Q 038595          179 KDLSKKMRELGAGEVLPVVEGD  200 (534)
Q Consensus       179 K~LDk~L~kLGA~rV~plg~gD  200 (534)
                      ..+...|.-+|++.+- ...+.
T Consensus       161 ~~l~~il~~~G~~~~~-~v~~~  181 (208)
T PRK13556        161 KYVASMMGFFGVTNME-TVVIE  181 (208)
T ss_pred             HHHHHHHHhcCCCcee-EEEEe
Confidence            7788899989987653 34443

>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit

Probab=97.11  E-value=0.0013  Score=68.86  Aligned_cols=115  Identities=12%  Similarity=0.126  Sum_probs=76.0

Q ss_pred             eecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccC
Q 038595          351 EATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQ  430 (534)
Q Consensus       351 ~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~  430 (534)
                      -+..|..|+++|.||-....+-....+  . -+|++|++.+...     ..+ |                          
T Consensus        42 ~i~~T~~C~~~C~FC~~~~~~~~~~~y--~-ls~eeI~e~~~~~-----~~~-G--------------------------   86 (343)
T TIGR03551        42 NINFTNVCYGGCGFCAFRKRKGDADAY--L-LSLEEIAERAAEA-----WKA-G--------------------------   86 (343)
T ss_pred             ccccccccccCCccCCCccCCCCCCcc--c-CCHHHHHHHHHHH-----HHC-C--------------------------
Confidence            455678899999999764322111122  2 4899999987542     222 3                          


Q ss_pred             CCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCc-cHHHHHHHHHhc--CCcEEEE----------cCCCC-HHH
Q 038595          431 IPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYP-EINTLVDELHRR--RISTFLV----------TNAQF-PDK  496 (534)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp-~L~elI~~lk~~--gi~~~Lv----------TNGtl-pe~  496 (534)
                                             ++++.|.+.-+|.+.. .+.++++.+|+.  ++.+...          ++|.+ ++.
T Consensus        87 -----------------------~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~  143 (343)
T TIGR03551        87 -----------------------ATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEA  143 (343)
T ss_pred             -----------------------CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHH
Confidence                                   2445555333676654 679999999987  4544332          56765 788


Q ss_pred             HhhcCC--CceEE-EEeeCCCHHHHHhhcC
Q 038595          497 IKLLKP--VTQLY-VSVDAATKDSLKAIDR  523 (534)
Q Consensus       497 l~~L~~--v~qly-vSlDA~~~e~y~~I~r  523 (534)
                      +++|.+  ++.++ .+.+..+++.+++|+.
T Consensus       144 l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~  173 (343)
T TIGR03551       144 LKRLKEAGLDSMPGTAAEILDDEVRKVICP  173 (343)
T ss_pred             HHHHHHhCcccccCcchhhcCHHHHHhcCC
Confidence            888886  77776 4668888999999985

This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.

>PRK08599 coproporphyrinogen III oxidase; Provisional

Probab=97.11  E-value=0.0021  Score=67.91  Aligned_cols=65  Identities=23%  Similarity=0.360  Sum_probs=53.8

Q ss_pred             cCCCCC--CccHHHHHHHHHhc-CC----cEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCC
Q 038595          462 VGEPIM--YPEINTLVDELHRR-RI----STFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLF  526 (534)
Q Consensus       462 ~GEPlL--yp~L~elI~~lk~~-gi----~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~  526 (534)
                      .|+|++  .+.|.++++.+++. ++    .+.+.+|...  ++.++.|..  ++.+.|++++.+++.++.+.|+..
T Consensus        59 GGtpt~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~  134 (377)
T PRK08599         59 GGTPTALSAEQLERLLTAIHRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHN  134 (377)
T ss_pred             CCCcccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC
Confidence            499997  35999999999985 43    4778899753  777877765  899999999999999999999754

>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]

Probab=97.09  E-value=0.002  Score=66.72  Aligned_cols=68  Identities=18%  Similarity=0.285  Sum_probs=51.9

Q ss_pred             cCCCCCC-ccHHHHHHHHHhcCCcEEEEcCCCC-HHHHhhcCC-CceEEEEeeCCCHHHHHhhcCCCCCchhhh
Q 038595          462 VGEPIMY-PEINTLVDELHRRRISTFLVTNAQF-PDKIKLLKP-VTQLYVSVDAATKDSLKAIDRPLFGDFWER  532 (534)
Q Consensus       462 ~GEPlLy-p~L~elI~~lk~~gi~~~LvTNGtl-pe~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP~~~~~w~~  532 (534)
                      +|+||=+ |.|-+.++++.+. +++.-.||+-+ +|.++-|.. ||.---.+.-.|.+--.+...  .+++|+=
T Consensus       173 gg~Ptp~lp~Ile~l~~~~~~-iPvvwNSnmY~s~E~l~lL~gvVDiyL~DfKYgNdeca~kySk--vp~Y~eV  243 (335)
T COG1313         173 GGDPTPHLPFILEALRYASEN-IPVVWNSNMYMSEETLKLLDGVVDIYLPDFKYGNDECAEKYSK--VPNYWEV  243 (335)
T ss_pred             CCCCCCchHHHHHHHHHHhcC-CCEEEecCCccCHHHHHHhhccceeeecccccCCHHHHHHhhc--CCchHHH
Confidence            3999987 6788888887776 99999999988 777776666 454444577788887777776  5789973

>PRK05799 coproporphyrinogen III oxidase; Provisional

Probab=97.09  E-value=0.0036  Score=65.99  Aligned_cols=65  Identities=22%  Similarity=0.287  Sum_probs=51.8

Q ss_pred             cCCCCC-Cc-cHHHHHHHHHhcC----CcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCC
Q 038595          462 VGEPIM-YP-EINTLVDELHRRR----ISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLF  526 (534)
Q Consensus       462 ~GEPlL-yp-~L~elI~~lk~~g----i~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~  526 (534)
                      .|+|++ .+ .+.++++.+++.+    +.+.+.||...  ++.++.|..  ++++.|.|++.+.+.++.+.|++.
T Consensus        59 GGtps~l~~~~l~~L~~~i~~~~~~~~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~  133 (374)
T PRK05799         59 GGTPTYLSLEALEILKETIKKLNKKEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHT  133 (374)
T ss_pred             CCcccCCCHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCC
Confidence            389996 44 5667888887654    35778899864  788887775  899999999999999999999753

>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family

Probab=97.07  E-value=0.0017  Score=67.77  Aligned_cols=114  Identities=15%  Similarity=0.111  Sum_probs=73.0

Q ss_pred             ecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCC
Q 038595          352 ATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQI  431 (534)
Q Consensus       352 ~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~  431 (534)
                      +..|..|+++|.||-...++  +.. ....-+|++|++.+.++     +.+ |                           
T Consensus        45 i~~s~~C~~~C~fC~~~~~~--~~~-~~~~ls~eei~~~~~~~-----~~~-G---------------------------   88 (340)
T TIGR03699        45 INYTNICVVGCKFCAFYRAP--GHP-EGYVLSVEEILQKIEEL-----VAY-G---------------------------   88 (340)
T ss_pred             cccchhhccCCccCCcccCC--CCc-cccCCCHHHHHHHHHHH-----HHc-C---------------------------
Confidence            33478999999999633222  111 01235888999877543     222 3                           


Q ss_pred             CCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCc-cHHHHHHHHHhcCCcEE------------EEcCCCC-HHHH
Q 038595          432 PSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYP-EINTLVDELHRRRISTF------------LVTNAQF-PDKI  497 (534)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp-~L~elI~~lk~~gi~~~------------LvTNGtl-pe~l  497 (534)
                                            ++.+.|++..+|.+.+ ++.++++.+++.+..+.            ..|||.+ ++.+
T Consensus        89 ----------------------~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l  146 (340)
T TIGR03699        89 ----------------------GTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVL  146 (340)
T ss_pred             ----------------------CcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHH
Confidence                                  2445666555777655 57789999998753332            2378887 7888


Q ss_pred             hhcCC--CceEE-EEeeCCCHHHHHhhcC
Q 038595          498 KLLKP--VTQLY-VSVDAATKDSLKAIDR  523 (534)
Q Consensus       498 ~~L~~--v~qly-vSlDA~~~e~y~~I~r  523 (534)
                      +.|..  ++.+. ...+..+++.++.+.+
T Consensus       147 ~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~  175 (340)
T TIGR03699       147 ERLKEAGLDSIPGGGAEILSDRVRKIISP  175 (340)
T ss_pred             HHHHHcCCCcCCCCcccccCHHHHHhhCC
Confidence            88886  66554 3456678888888874

members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.

>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=97.07  E-value=0.0023  Score=69.86  Aligned_cols=116  Identities=17%  Similarity=0.324  Sum_probs=77.2

Q ss_pred             ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCCC
Q 038595          356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSND  435 (534)
Q Consensus       356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (534)
                      .-|+++|.||-.+...  |   +....+|++|++++..+    ++  +|    +.+|+|+|-                  
T Consensus       163 rGC~~~CsfC~~p~~~--G---~~rsr~~e~Il~ei~~l----~~--~G----~keI~l~g~------------------  209 (459)
T PRK14338        163 YGCNMSCSYCVIPLRR--G---RERSRPLAEIVEEVRRI----AA--RG----AKEITLLGQ------------------  209 (459)
T ss_pred             cCCCCCCCcCCeeccC--C---CCccCCHHHHHHHHHHH----HH--CC----CeEEEEeee------------------
Confidence            4699999999875432  1   12456889999887643    22  23    356666331                  


Q ss_pred             CCcccccccHHHhhhccCCceEEEeecCCCCC-CccHHHHHHHHHhc-CC-cEEE-EcCCCC--HHHHhhcCC----Cce
Q 038595          436 GEEKEGGVTLERLNEGLTPRHCALSLVGEPIM-YPEINTLVDELHRR-RI-STFL-VTNAQF--PDKIKLLKP----VTQ  505 (534)
Q Consensus       436 ~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlL-yp~L~elI~~lk~~-gi-~~~L-vTNGtl--pe~l~~L~~----v~q  505 (534)
                                            .+...|+|+. .+.|.+|++.+++. |+ .+.+ .+|...  ++.++.|..    +..
T Consensus       210 ----------------------~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~~~~~~  267 (459)
T PRK14338        210 ----------------------IVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPAWMTDRLIHAVARLPKCCPH  267 (459)
T ss_pred             ----------------------cCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChhhcCHHHHHHHhcccccccc
Confidence                                  1122477763 56799999999985 65 3443 446543  455555543    578


Q ss_pred             EEEEeeCCCHHHHHhhcCCCC
Q 038595          506 LYVSVDAATKDSLKAIDRPLF  526 (534)
Q Consensus       506 lyvSlDA~~~e~y~~I~rP~~  526 (534)
                      +.+++++.+.+.+++++|+..
T Consensus       268 v~lglQSgsd~vLk~m~R~~t  288 (459)
T PRK14338        268 INLPVQAGDDEVLKRMRRGYT  288 (459)
T ss_pred             eecCcccCCHHHHHhccCCCC
Confidence            999999999999999999854

>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]

Probab=97.07  E-value=0.0028  Score=61.70  Aligned_cols=116  Identities=14%  Similarity=0.000  Sum_probs=80.7

Q ss_pred             EEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCcc------------------C--------cCCCCeEEEEec
Q 038595           70 GKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPE------------------D--------LSKEALVLIVAS  123 (534)
Q Consensus        70 VlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~------------------d--------L~~~~lvIfv~S  123 (534)
                      |.+.|-| +|||+.+|+.+++.+++.|.+++++.+.+.+..                  |        +.+.+.+||++|
T Consensus         6 I~gs~r~-~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsP   84 (207)
T COG0655           6 INGSPRS-NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSP   84 (207)
T ss_pred             EEecCCC-CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCC
Confidence            4555666 899999999999999999999999999876311                  1        234689999999


Q ss_pred             cCCCCCCchHHHHHHHH-HHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCcee
Q 038595          124 SWEDGKPPEAAKFFMNW-IDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEV  193 (534)
Q Consensus       124 TYg~G~pPdna~~Fle~-L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV  193 (534)
                      ||- |..+..++.|++. +.-..     ....|+++..++|..+-+.-+ ........+...+...|...+
T Consensus        85 vy~-g~vsa~~K~fiDR~~~~~~-----~~~~l~~k~~~~~~~~~~~~g-~~e~~~~~~~~~~~~~~~~~v  148 (207)
T COG0655          85 VYF-GNVSAQMKAFIDRSTGPLW-----APGALRGKVGAAFVSGGSRGG-GQEATLLSLLLFFLHHGMIVV  148 (207)
T ss_pred             eec-CCchHHHHHHHhhcchhhc-----ccchhccccceEEEEeccCCC-ChHHHHHHHHHHHHHcCCeEe
Confidence            999 7778889999888 43221     124688888888876654332 111344555555555554433

>PRK06267 hypothetical protein; Provisional

Probab=96.94  E-value=0.0038  Score=65.94  Aligned_cols=125  Identities=16%  Similarity=0.116  Sum_probs=77.0

Q ss_pred             eccCCeeeeeccccccc--ccccccccCCCC-CCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeecccc
Q 038595          343 GIESHRCMEATPSLACA--NKCVFCWRHHTN-PVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFY  419 (534)
Q Consensus       343 gi~s~~c~~~~p~~~C~--~~C~~C~r~~~~-~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~  419 (534)
                      |=.-+-|.-+..|..|+  ++|.||-....+ +.... .....+|++|++++..     ++.+ |+.             
T Consensus        22 G~~v~l~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~-~~~~~s~eeI~eea~~-----~~~~-Gv~-------------   81 (350)
T PRK06267         22 GNIVSLERALFLGWYCNLKGPCKFCYMSTQKDKIKDP-LKARRRVESILAEAIL-----MKRI-GWK-------------   81 (350)
T ss_pred             CCeEEEEEeeeecCCCcCCCCCcCCCCcccCCccCcc-ccccCCHHHHHHHHHH-----HHHc-CCC-------------
Confidence            33334455666788999  999999554322 22111 1234589999998843     2332 322             


Q ss_pred             ccccccccccCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CCcEEEEcCCCCHHHHh
Q 038595          420 FGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RISTFLVTNAQFPDKIK  498 (534)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi~~~LvTNGtlpe~l~  498 (534)
                                                          .+.|+ .|+++...+|.++++.+++. +..+.+-.....++.+.
T Consensus        82 ------------------------------------~~~ls-gG~~~~~~el~~i~e~I~~~~~~~~~~s~G~~d~~~~~  124 (350)
T PRK06267         82 ------------------------------------LEFIS-GGYGYTTEEINDIAEMIAYIQGCKQYLNVGIIDFLNIN  124 (350)
T ss_pred             ------------------------------------EEEEe-cCCCCCHHHHHHHHHHHHHhhCCceEeecccCCHHHHh
Confidence                                                12122 58886667899999999876 44455444444454443


Q ss_pred             hcCCCceEEEEeeCCCHHHHHhhcCCC
Q 038595          499 LLKPVTQLYVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       499 ~L~~v~qlyvSlDA~~~e~y~~I~rP~  525 (534)
                      .+ .+..++..+++.+++.|.+|+...
T Consensus       125 ~~-~l~Gv~g~~ET~~~~~~~~i~~~~  150 (350)
T PRK06267        125 LN-EIEGVVGAVETVNPKLHREICPGK  150 (350)
T ss_pred             hc-cccCceeeeecCCHHHHHhhCCCC
Confidence            22 234567899999999999999653

>PRK08207 coproporphyrinogen III oxidase; Provisional

Probab=96.93  E-value=0.0058  Score=67.53  Aligned_cols=69  Identities=23%  Similarity=0.427  Sum_probs=52.1

Q ss_pred             EEeec-CCCCC--CccHHHHHHHHHhc--C---CcEEEEcCC---CC-HHHHhhcCC--CceEEEEeeCCCHHHHHhhcC
Q 038595          458 ALSLV-GEPIM--YPEINTLVDELHRR--R---ISTFLVTNA---QF-PDKIKLLKP--VTQLYVSVDAATKDSLKAIDR  523 (534)
Q Consensus       458 alSl~-GEPlL--yp~L~elI~~lk~~--g---i~~~LvTNG---tl-pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~r  523 (534)
                      +|.+. |+|++  .++|.++++.+++.  +   +.-+.+++|   ++ ++.++.|..  ++.+.|.+++.+.++++.|.|
T Consensus       221 tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR  300 (488)
T PRK08207        221 TIYFGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGR  300 (488)
T ss_pred             EEEEeCCCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCC
Confidence            44444 99998  45899999999864  3   333444444   23 778887775  899999999999999999999


Q ss_pred             CCC
Q 038595          524 PLF  526 (534)
Q Consensus       524 P~~  526 (534)
                      ++.
T Consensus       301 ~ht  303 (488)
T PRK08207        301 HHT  303 (488)
T ss_pred             CCC
Confidence            753

>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]

Probab=96.90  E-value=0.0043  Score=65.80  Aligned_cols=114  Identities=18%  Similarity=0.244  Sum_probs=76.7

Q ss_pred             cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCC
Q 038595          355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSN  434 (534)
Q Consensus       355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (534)
                      -.-|+..|.||--+......      --...||++.+....    +.+...|+                           
T Consensus       108 QvGC~~~C~FCaTg~~G~~R------NLs~~EIv~Qv~~~~----~~~~~~~~---------------------------  150 (349)
T COG0820         108 QVGCPVGCTFCATGQGGLNR------NLSAGEIVEQVLLAA----KALGEDFG---------------------------  150 (349)
T ss_pred             CCCcCCCCCeecccccccee------ccCHHHHHHHHHHHH----HhcCcccc---------------------------
Confidence            34599999999876433221      135678999887653    22222222                           


Q ss_pred             CCCcccccccHHHhhhccCCceEEEeecCCCCC-CccHHHHHHHHHh-c--CCc---EEEEcCCCCHHHHhhcCC-C-ce
Q 038595          435 DGEEKEGGVTLERLNEGLTPRHCALSLVGEPIM-YPEINTLVDELHR-R--RIS---TFLVTNAQFPDKIKLLKP-V-TQ  505 (534)
Q Consensus       435 ~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlL-yp~L~elI~~lk~-~--gi~---~~LvTNGtlpe~l~~L~~-v-~q  505 (534)
                                       -.+.++.+.++|||++ |.....+++.+.. .  |++   +.+-|+|-.|...+-... + -.
T Consensus       151 -----------------~~i~NVV~MGMGEPl~N~dnV~~a~~i~~~~~G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~  213 (349)
T COG0820         151 -----------------RRISNVVFMGMGEPLLNLDNVVKALEIINDDEGLGLSKRRITVSTSGIVPRIRKLADEQLGVA  213 (349)
T ss_pred             -----------------ceeeeEEEecCCchhhhHHHHHHHHHhhcCcccccccceEEEEecCCCchhHHHHHhhcCCeE
Confidence                             1468899999999999 5788888888873 3  443   689999976655432211 2 45


Q ss_pred             EEEEeeCCCHHHHHhhc
Q 038595          506 LYVSVDAATKDSLKAID  522 (534)
Q Consensus       506 lyvSlDA~~~e~y~~I~  522 (534)
                      |-|||.|+|.+.=+.|-
T Consensus       214 LAiSLHa~nd~lR~~L~  230 (349)
T COG0820         214 LAISLHAPNDELRDQLM  230 (349)
T ss_pred             EEEecCCCCHHHHhhhh
Confidence            89999999998755554

>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=96.90  E-value=0.0038  Score=67.73  Aligned_cols=118  Identities=19%  Similarity=0.249  Sum_probs=78.0

Q ss_pred             ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCCC
Q 038595          356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSND  435 (534)
Q Consensus       356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (534)
                      .-|+++|.||-.+...  |..   ...++++|++++..+     .. .|    +.+|+|+|-                  
T Consensus       146 rGC~~~CsfC~~p~~~--g~~---~sr~~e~Iv~Ei~~l-----~~-~G----~keI~l~g~------------------  192 (440)
T PRK14334        146 RGCNHHCTYCIVPTTR--GPE---VSRHPDLILRELELL-----KA-AG----VQEVTLLGQ------------------  192 (440)
T ss_pred             cCCCCCCcCCCcchhc--CCC---ccCCHHHHHHHHHHH-----HH-CC----CeEEEEEec------------------
Confidence            4699999999876432  222   235788898887543     22 13    456777330                  


Q ss_pred             CCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhcCCc-EEEEc-CCCC--HHHHhhcCC----CceEE
Q 038595          436 GEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRIS-TFLVT-NAQF--PDKIKLLKP----VTQLY  507 (534)
Q Consensus       436 ~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~gi~-~~LvT-NGtl--pe~l~~L~~----v~qly  507 (534)
                                          ++. +..|+|..++.+.+|++.+++.|+. +.+.+ |...  ++.++.|..    +.++.
T Consensus       193 --------------------~~~-~yG~d~~~~~~~~~Ll~~l~~~~i~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~  251 (440)
T PRK14334        193 --------------------NVN-SYGVDQPGFPSFAELLRLVGASGIPRVKFTTSHPMNFTDDVIAAMAETPAVCEYIH  251 (440)
T ss_pred             --------------------ccc-ccccCCCCcCCHHHHHHHHHhcCCcEEEEccCCcccCCHHHHHHHHhcCcCCCeEE
Confidence                                000 1234554567888999999887764 44433 4433  666666643    67899


Q ss_pred             EEeeCCCHHHHHhhcCCCCC
Q 038595          508 VSVDAATKDSLKAIDRPLFG  527 (534)
Q Consensus       508 vSlDA~~~e~y~~I~rP~~~  527 (534)
                      ++|++.+++.+++++|+...
T Consensus       252 igvQSgs~~vLk~m~R~~~~  271 (440)
T PRK14334        252 LPVQSGSDRVLRRMAREYRR  271 (440)
T ss_pred             eccccCCHHHHHHhCCCCCH
Confidence            99999999999999998654

>PRK06294 coproporphyrinogen III oxidase; Provisional

Probab=96.87  E-value=0.007  Score=64.26  Aligned_cols=65  Identities=20%  Similarity=0.274  Sum_probs=55.0

Q ss_pred             cCCCCCCc--cHHHHHHHHHhc-CCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCC
Q 038595          462 VGEPIMYP--EINTLVDELHRR-RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLF  526 (534)
Q Consensus       462 ~GEPlLyp--~L~elI~~lk~~-gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~  526 (534)
                      .|.|++-|  .|.++++.+++. ...+.+.+|...  ++.++.|..  ++.+.|.|++.+.+.++++.|++.
T Consensus        66 GGTPs~l~~~~l~~ll~~i~~~~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~  137 (370)
T PRK06294         66 GGTPSLVPPALIQDILKTLEAPHATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHS  137 (370)
T ss_pred             CCccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCC
Confidence            49999976  899999999876 445778999764  677877775  899999999999999999999763

>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family

Probab=96.81  E-value=0.0051  Score=64.81  Aligned_cols=117  Identities=14%  Similarity=0.125  Sum_probs=75.9

Q ss_pred             eeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccc
Q 038595          349 CMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAID  428 (534)
Q Consensus       349 c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~  428 (534)
                      |.-+..|..|+++|.||--...+.....+  .+ +|++|++.+.+.     .. .|                        
T Consensus        49 ~~~in~Tn~C~~~C~FCa~~~~~~~~~~y--~l-~~eeI~~~a~~~-----~~-~G------------------------   95 (351)
T TIGR03700        49 NRHLNYTNICVNGCAFCAFQRERGEPGAY--AM-SLEEIVARVKEA-----YA-PG------------------------   95 (351)
T ss_pred             cCCcccccccccCCccCceeCCCCCcccC--CC-CHHHHHHHHHHH-----HH-CC------------------------
Confidence            34456789999999999876543222222  23 889999977543     11 12                        


Q ss_pred             cCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCC--ccHHHHHHHHHhcC--CcEEEEc----------CCCC-
Q 038595          429 KQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMY--PEINTLVDELHRRR--ISTFLVT----------NAQF-  493 (534)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLy--p~L~elI~~lk~~g--i~~~LvT----------NGtl-  493 (534)
                                               ++.+.|. +|+..-+  .++.++++.+|+..  +.+...|          .|.. 
T Consensus        96 -------------------------~~~v~l~-~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~  149 (351)
T TIGR03700        96 -------------------------ATEVHIV-GGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPT  149 (351)
T ss_pred             -------------------------CcEEEEe-cCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCH
Confidence                                     2334444 4554333  37889999999874  4443322          4554 


Q ss_pred             HHHHhhcCC--CceEE-EEeeCCCHHHHHhhcCC
Q 038595          494 PDKIKLLKP--VTQLY-VSVDAATKDSLKAIDRP  524 (534)
Q Consensus       494 pe~l~~L~~--v~qly-vSlDA~~~e~y~~I~rP  524 (534)
                      ++.+++|..  ++.+. ..+...+++.+++|+..
T Consensus       150 ~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~  183 (351)
T TIGR03700       150 EEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPE  183 (351)
T ss_pred             HHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCC
Confidence            566888885  77776 68888899999999964

Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.

>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase

Probab=96.74  E-value=0.0089  Score=65.83  Aligned_cols=112  Identities=21%  Similarity=0.356  Sum_probs=76.0

Q ss_pred             ccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCC
Q 038595          354 PSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPS  433 (534)
Q Consensus       354 p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (534)
                      -|.-|+++|.||..+..   ...  +...+|+.|++++..+++    .+ |+.    .|+|                   
T Consensus       199 tSRGCp~~C~FC~~~~~---~~~--~R~rs~e~Vv~Ei~~l~~----~~-gv~----~~~~-------------------  245 (497)
T TIGR02026       199 FARGCPFTCNFCSQWKF---WRR--YRHRDPKKFVDEIEWLVR----TH-GVG----FFIL-------------------  245 (497)
T ss_pred             ccCCCCCCCCCCCCCCC---Cce--eecCCHHHHHHHHHHHHH----Hc-CCC----EEEE-------------------
Confidence            35569999999976432   223  456799999998865433    22 331    1222                   


Q ss_pred             CCCCcccccccHHHhhhccCCceEEEeecCCCCCCc-cHHHHHHHHHhcC-CcEEE--EcCCC----CHHHHhhcCC--C
Q 038595          434 NDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYP-EINTLVDELHRRR-ISTFL--VTNAQ----FPDKIKLLKP--V  503 (534)
Q Consensus       434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp-~L~elI~~lk~~g-i~~~L--vTNGt----lpe~l~~L~~--v  503 (534)
                                                 ...+|++++ ++.+|++.+.++| +.+..  .|...    -++.++.+..  +
T Consensus       246 ---------------------------~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~  298 (497)
T TIGR02026       246 ---------------------------ADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGL  298 (497)
T ss_pred             ---------------------------EecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCC
Confidence                                       125677765 7889999998876 55443  33332    2566766654  8


Q ss_pred             ceEEEEeeCCCHHHHHhhcCCC
Q 038595          504 TQLYVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       504 ~qlyvSlDA~~~e~y~~I~rP~  525 (534)
                      ..+.+.+++.+++.++.+++..
T Consensus       299 ~~v~iGiES~~~~~L~~~~K~~  320 (497)
T TIGR02026       299 VHISLGTEAAAQATLDHFRKGT  320 (497)
T ss_pred             cEEEEccccCCHHHHHHhcCCC
Confidence            8999999999999999999864

This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.

>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125

Probab=96.62  E-value=0.0085  Score=64.65  Aligned_cols=115  Identities=23%  Similarity=0.342  Sum_probs=75.3

Q ss_pred             cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeee--ccccccccccccccCCC
Q 038595          355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLL--DFFYFGTVSSAIDKQIP  432 (534)
Q Consensus       355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~--~~~~~~~~~~~~~~~~~  432 (534)
                      +.-|+++|.||..+...  | .  ....+|++|++++..+..    .  |    +.+|+|+  |++              
T Consensus       142 srGC~~~CsfC~~~~~~--G-~--~r~r~~e~Vv~Ei~~l~~----~--g----~k~i~~~~~d~~--------------  192 (430)
T TIGR01125       142 AEGCNRRCAFCIIPSIR--G-K--LRSRPIEEILKEAERLVD----Q--G----VKEIILIAQDTT--------------  192 (430)
T ss_pred             ccCCCCCCCcCCeeccc--C-C--ceecCHHHHHHHHHHHHH----C--C----CcEEEEEeECCC--------------
Confidence            44699999999875432  2 2  345789999998865432    1  3    3567764  222              


Q ss_pred             CCCCCcccccccHHHhhhccCCceEEEeecCCCCCC-ccHHHHHHHHHhcC-Cc-EEE-EcCC--CCHHHHhhcCC----
Q 038595          433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMY-PEINTLVDELHRRR-IS-TFL-VTNA--QFPDKIKLLKP----  502 (534)
Q Consensus       433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLy-p~L~elI~~lk~~g-i~-~~L-vTNG--tlpe~l~~L~~----  502 (534)
                                                  ..|.|+.. +++.+|++.+++.+ +. +.+ .++.  ..++.++.+..    
T Consensus       193 ----------------------------~~g~d~~~~~~l~~Ll~~i~~~~~i~~~r~~~~~p~~~~~ell~~~~~~~~~  244 (430)
T TIGR01125       193 ----------------------------AYGKDLYRESKLVDLLEELGKVGGIYWIRMHYLYPDELTDDVIDLMAEGPKV  244 (430)
T ss_pred             ----------------------------ccccCCCCcccHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHhhCCcc
Confidence                                        23555543 57889999998875 43 221 2222  22566665543    


Q ss_pred             CceEEEEeeCCCHHHHHhhcCCCC
Q 038595          503 VTQLYVSVDAATKDSLKAIDRPLF  526 (534)
Q Consensus       503 v~qlyvSlDA~~~e~y~~I~rP~~  526 (534)
                      ...+.++|++.+++.++.++|+..
T Consensus       245 ~~~l~iglES~s~~vLk~m~k~~~  268 (430)
T TIGR01125       245 LPYLDIPLQHASDRILKLMRRPGS  268 (430)
T ss_pred             cCceEeCCCCCCHHHHhhCCCCCC
Confidence            467999999999999999999753

This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.

>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]

Probab=96.52  E-value=0.0016  Score=66.80  Aligned_cols=68  Identities=18%  Similarity=0.307  Sum_probs=52.9

Q ss_pred             CCCCCCccHHHHHHHHHhc-CCc-EEEEcCCCCH-HHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCCCchhhhc
Q 038595          463 GEPIMYPEINTLVDELHRR-RIS-TFLVTNAQFP-DKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLFGDFWERF  533 (534)
Q Consensus       463 GEPlLyp~L~elI~~lk~~-gi~-~~LvTNGtlp-e~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~~~~w~~~  533 (534)
                      |||++.+++.+.+..+... |++ +.+.|||... ..+-+|..  ++.+.+|+|...++.|.++.|   +.-|.++
T Consensus        68 geptIr~di~~i~~g~~~l~gLks~~ITtng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~r---r~g~v~V  140 (323)
T KOG2876|consen   68 GEPLIRQDIVPIVAGLSSLPGLKSIGITTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTR---RKGFVKV  140 (323)
T ss_pred             CCCcccccccchhhhhhcccchhhhceeccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhh---hccHHHH
Confidence            9999999999999988876 765 7799999832 22333333  788999999999999999998   3345543

>TIGR00089 RNA modification enzyme, MiaB family

Probab=96.50  E-value=0.0092  Score=64.26  Aligned_cols=115  Identities=22%  Similarity=0.362  Sum_probs=74.5

Q ss_pred             ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccccccccccccCCCC
Q 038595          356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYFGTVSSAIDKQIPS  433 (534)
Q Consensus       356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~  433 (534)
                      .-|+++|.||..+...  |   ++...+|++|++++..+.    .  .|    +.+|+|.|  |+.+             
T Consensus       147 rGC~~~CsfC~~~~~~--g---~~r~r~~e~Vv~Ei~~l~----~--~g----~~ei~l~~~~~~~y-------------  198 (429)
T TIGR00089       147 EGCDKFCTYCIVPYAR--G---RERSRPPEDILEEVKELV----S--KG----VKEIVLLGQNVGAY-------------  198 (429)
T ss_pred             hCcCCCCCcCceeccc--C---CCCCCCHHHHHHHHHHHH----H--CC----CceEEEEeeccccc-------------
Confidence            3599999999876433  2   345679999999886432    2  23    45677743  2221             


Q ss_pred             CCCCcccccccHHHhhhccCCceEEEeecCCCCC-CccHHHHHHHHHhc-CCc-EEEEc-CCC--CHHHHhhcCC----C
Q 038595          434 NDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIM-YPEINTLVDELHRR-RIS-TFLVT-NAQ--FPDKIKLLKP----V  503 (534)
Q Consensus       434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlL-yp~L~elI~~lk~~-gi~-~~LvT-NGt--lpe~l~~L~~----v  503 (534)
                                                   |+++- .+.+.+|++.+++. |+. +.+.+ |..  .++.++.|..    +
T Consensus       199 -----------------------------g~d~~~~~~l~~Ll~~l~~~~g~~~i~~~~~~p~~i~~ell~~m~~~~~~~  249 (429)
T TIGR00089       199 -----------------------------GKDLKGETNLADLLRELSKIDGIERIRFGSSHPDDVTDDLIELIAENPKVC  249 (429)
T ss_pred             -----------------------------cCCCCCCcCHHHHHHHHhcCCCCCEEEECCCChhhcCHHHHHHHHhCCCcc
Confidence                                         33322 14588888888776 554 44433 332  2555555542    5


Q ss_pred             ceEEEEeeCCCHHHHHhhcCCCCC
Q 038595          504 TQLYVSVDAATKDSLKAIDRPLFG  527 (534)
Q Consensus       504 ~qlyvSlDA~~~e~y~~I~rP~~~  527 (534)
                      ..+.+.+++.+++.+++++|+...
T Consensus       250 ~~l~igiES~s~~vLk~m~R~~~~  273 (429)
T TIGR00089       250 KHLHLPVQSGSDRILKRMNRKYTR  273 (429)
T ss_pred             CceeeccccCChHHHHhCCCCCCH
Confidence            789999999999999999998643

This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.

>TIGR00423 radical SAM domain protein, CofH subfamily

Probab=96.46  E-value=0.012  Score=60.73  Aligned_cols=114  Identities=13%  Similarity=0.175  Sum_probs=74.3

Q ss_pred             eecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccC
Q 038595          351 EATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQ  430 (534)
Q Consensus       351 ~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~  430 (534)
                      -+.+|..|+++|.||-....+.....   ..-+|++|++.+.+.     ... |.                         
T Consensus         8 ~i~~T~~C~~~C~FC~~~~~~~~~~~---~~ls~eeI~~~~~~~-----~~~-G~-------------------------   53 (309)
T TIGR00423         8 NINFTNICVGKCKFCAFRAREKDKDA---YVLSLEEILEKVKEA-----VAK-GA-------------------------   53 (309)
T ss_pred             eecCccccccCCccCCCccCCCCCCc---ccCCHHHHHHHHHHH-----HHC-CC-------------------------
Confidence            35678899999999976543321111   235889999887542     111 32                         


Q ss_pred             CCCCCCCcccccccHHHhhhccCCceEEEeecC-CCCCC-ccHHHHHHHHHhcCCcEEEE------------cCCCC-HH
Q 038595          431 IPSNDGEEKEGGVTLERLNEGLTPRHCALSLVG-EPIMY-PEINTLVDELHRRRISTFLV------------TNAQF-PD  495 (534)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~G-EPlLy-p~L~elI~~lk~~gi~~~Lv------------TNGtl-pe  495 (534)
                                              +.+.|. .| .|.+. .++.++++.+|+.+..+.+.            ++|.. ++
T Consensus        54 ------------------------~~i~l~-gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e  108 (309)
T TIGR00423        54 ------------------------TEVCIQ-GGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEE  108 (309)
T ss_pred             ------------------------CEEEEe-cCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHH
Confidence                                    234444 24 46554 36899999999875333222            45665 78


Q ss_pred             HHhhcCC--CceEE-EEeeCCCHHHHHhhcC
Q 038595          496 KIKLLKP--VTQLY-VSVDAATKDSLKAIDR  523 (534)
Q Consensus       496 ~l~~L~~--v~qly-vSlDA~~~e~y~~I~r  523 (534)
                      .++.|.+  ++.+. +++...+++.+++++.
T Consensus       109 ~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~  139 (309)
T TIGR00423       109 VLKRLKKAGLDSMPGTGAEILDDSVRRKICP  139 (309)
T ss_pred             HHHHHHHcCCCcCCCCcchhcCHHHHHhhCC
Confidence            8888886  77664 6888899999999974

This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.

>PRK05904 coproporphyrinogen III oxidase; Provisional

Probab=96.44  E-value=0.022  Score=60.33  Aligned_cols=65  Identities=20%  Similarity=0.323  Sum_probs=53.3

Q ss_pred             cCCCCCCc--cHHHHHHHHHhc---CCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCC
Q 038595          462 VGEPIMYP--EINTLVDELHRR---RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLF  526 (534)
Q Consensus       462 ~GEPlLyp--~L~elI~~lk~~---gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~  526 (534)
                      .|-|++-+  .|.++++.+++.   +..+.+.+|...  ++.++.|..  +..|.|.|++.+.+.++.+.|+..
T Consensus        64 GGTPs~L~~~~l~~ll~~i~~~~~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~  137 (353)
T PRK05904         64 GGTPNCLNDQLLDILLSTIKPYVDNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHT  137 (353)
T ss_pred             CCccccCCHHHHHHHHHHHHHhcCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC
Confidence            49999854  789999999875   234788889865  677777764  899999999999999999999753

>PRK06582 coproporphyrinogen III oxidase; Provisional

Probab=96.35  E-value=0.029  Score=60.18  Aligned_cols=69  Identities=22%  Similarity=0.371  Sum_probs=55.6

Q ss_pred             EEeec-CCCCCC-c-cHHHHHHHHHhc-CC----cEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCC
Q 038595          458 ALSLV-GEPIMY-P-EINTLVDELHRR-RI----STFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       458 alSl~-GEPlLy-p-~L~elI~~lk~~-gi----~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~  525 (534)
                      +|.+. |.|++- + .|.++++.+++. ++    -+.+.+|...  ++.++.|..  ++.+.|.|++.+.+.++.+.|.+
T Consensus        65 tiy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h  144 (390)
T PRK06582         65 SIFFGGGTPSLMNPVIVEGIINKISNLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTH  144 (390)
T ss_pred             EEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCC
Confidence            44554 899775 3 788899999875 23    4889999864  788888875  89999999999999999999976


Q ss_pred             C
Q 038595          526 F  526 (534)
Q Consensus       526 ~  526 (534)
                      .
T Consensus       145 ~  145 (390)
T PRK06582        145 D  145 (390)
T ss_pred             C
Confidence            4

>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed

Probab=96.30  E-value=0.017  Score=63.59  Aligned_cols=113  Identities=22%  Similarity=0.223  Sum_probs=76.4

Q ss_pred             eecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccC
Q 038595          351 EATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQ  430 (534)
Q Consensus       351 ~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~  430 (534)
                      -+-.|+.|.|+|.||--+..|..  ..+ ..-++++|++++..+     ..+ |                          
T Consensus        87 pLyiSN~C~n~C~YCgfs~~n~~--i~r-~~Ls~EEI~~ea~~~-----~~~-G--------------------------  131 (469)
T PRK09613         87 PLYISNYCVNNCVYCGFRRSNKE--IKR-KKLTQEEIREEVKAL-----EDM-G--------------------------  131 (469)
T ss_pred             eccccCCCCCCCccCCCccCCCC--CCc-eECCHHHHHHHHHHH-----HHC-C--------------------------
Confidence            33457899999999988766541  112 245899999998653     221 2                          


Q ss_pred             CCCCCCCcccccccHHHhhhccCCceEEEeecCC-CCCC--ccHHHHHHHHHhc----CCcEEEEcC-CCC-HHHHhhcC
Q 038595          431 IPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGE-PIMY--PEINTLVDELHRR----RISTFLVTN-AQF-PDKIKLLK  501 (534)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GE-PlLy--p~L~elI~~lk~~----gi~~~LvTN-Gtl-pe~l~~L~  501 (534)
                                             .+++.|. +|| |.-+  .+|.++|+.+++.    |.-..+..| |.+ .+.++.|.
T Consensus       132 -----------------------~~~i~Lv-sGe~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~Lk  187 (469)
T PRK09613        132 -----------------------HKRLALV-AGEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLK  187 (469)
T ss_pred             -----------------------CCEEEEE-eCCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHH
Confidence                                   3556664 455 3433  3788899988873    211122333 333 67888888


Q ss_pred             C--CceEEEEeeCCCHHHHHhhc
Q 038595          502 P--VTQLYVSVDAATKDSLKAID  522 (534)
Q Consensus       502 ~--v~qlyvSlDA~~~e~y~~I~  522 (534)
                      +  ++.+.+-....++++|++++
T Consensus       188 eaGv~~~~l~qETY~~ety~~~h  210 (469)
T PRK09613        188 EAGIGTYQLFQETYHKPTYEKMH  210 (469)
T ss_pred             HcCCCEEEeccccCCHHHHHhcC
Confidence            6  89999999999999999987

>PRK08898 coproporphyrinogen III oxidase; Provisional

Probab=96.25  E-value=0.043  Score=58.83  Aligned_cols=69  Identities=17%  Similarity=0.288  Sum_probs=55.8

Q ss_pred             EEeec-CCCCCCc--cHHHHHHHHHhc-C----CcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCC
Q 038595          458 ALSLV-GEPIMYP--EINTLVDELHRR-R----ISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       458 alSl~-GEPlLyp--~L~elI~~lk~~-g----i~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~  525 (534)
                      +|-+. |.|++.+  .|.++++.+++. .    ..+.+.+|-..  ++.++.|..  ++.+++-|++.+++.++.+.|+.
T Consensus        76 siy~GGGTPs~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~  155 (394)
T PRK08898         76 TVFIGGGTPSLLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIH  155 (394)
T ss_pred             EEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCC
Confidence            34444 8999975  899999999875 3    34778888543  788888885  99999999999999999999975


Q ss_pred             C
Q 038595          526 F  526 (534)
Q Consensus       526 ~  526 (534)
                      .
T Consensus       156 ~  156 (394)
T PRK08898        156 D  156 (394)
T ss_pred             C
Confidence            4

>PRK13555 azoreductase; Provisional

Probab=96.12  E-value=0.068  Score=52.78  Aligned_cols=124  Identities=11%  Similarity=0.175  Sum_probs=83.3

Q ss_pred             cEEEEEECcc----chHHHHHHHHHHHHhhCC--CceEEECCCCCCccC-------------------------------
Q 038595           69 KGKLFFISQT----GTSKTLAKRLHALLTSND--LLFDLVDPQTYEPED-------------------------------  111 (534)
Q Consensus        69 kVlI~YgSqT----GtTE~lAe~La~~L~~~G--l~v~V~dL~d~d~~d-------------------------------  111 (534)
                      +++++++|-.    -.+.++|+.+.+.+++.+  ..|+++||.+.++..                               
T Consensus         3 kiL~I~asp~~~~~S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   82 (208)
T PRK13555          3 KVLFVKANDRPAEQAVSSKMYETFVSTYKEANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVATVDQ   82 (208)
T ss_pred             eEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHHHHH
Confidence            5899999943    567889999999998765  788888887532110                               


Q ss_pred             ----cCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCccccc----ccCCCCCeEEEEEecCcchHH----HHHHHHH
Q 038595          112 ----LSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVG----SLLLSNCKFAVFGVGSKSYEK----TFNMVAK  179 (534)
Q Consensus       112 ----L~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~----~~~Lkgl~yAVFGLGDs~Y~e----~Fc~aAK  179 (534)
                          +...+.+||++|-|+ +.+|.-.+.|++++-....=|+..    ...|+|++..|++.-...|..    ....+..
T Consensus        83 ~~~~~~~AD~lvi~~P~~n-~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~~~  161 (208)
T PRK13555         83 YLNQFLEADKVVFAFPLWN-FTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMAVN  161 (208)
T ss_pred             HHHHHHHcCEEEEEcCccc-ccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhHHH
Confidence                123579999999999 556667888888876432223321    235889999998762223421    2233446


Q ss_pred             HHHHHHHHcCCcee
Q 038595          180 DLSKKMRELGAGEV  193 (534)
Q Consensus       180 ~LDk~L~kLGA~rV  193 (534)
                      .+..+|.-+|.+.+
T Consensus       162 yl~~il~~~Gi~~v  175 (208)
T PRK13555        162 YVTTVLGFWGITNP  175 (208)
T ss_pred             HHHHHHHhcCCCce
Confidence            77788888898644

>PRK09057 coproporphyrinogen III oxidase; Provisional

Probab=96.06  E-value=0.05  Score=57.97  Aligned_cols=69  Identities=17%  Similarity=0.296  Sum_probs=55.8

Q ss_pred             EEee-cCCCCCCc--cHHHHHHHHHhc-CC----cEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCC
Q 038595          458 ALSL-VGEPIMYP--EINTLVDELHRR-RI----STFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       458 alSl-~GEPlLyp--~L~elI~~lk~~-gi----~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~  525 (534)
                      +|-+ .|-|++-|  .|.++++.+++. .+    .+.+.+|-..  ++.++.|..  +++|++-|.+.+.+..+.+.|++
T Consensus        58 tiy~GGGTPs~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~  137 (380)
T PRK09057         58 SIFFGGGTPSLMQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLH  137 (380)
T ss_pred             eEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCC
Confidence            3444 49999976  899999999974 32    4778888653  688888875  89999999999999999999986


Q ss_pred             C
Q 038595          526 F  526 (534)
Q Consensus       526 ~  526 (534)
                      .
T Consensus       138 ~  138 (380)
T PRK09057        138 S  138 (380)
T ss_pred             C
Confidence            4

>PRK06245 cofG FO synthase subunit 1; Reviewed

Probab=96.01  E-value=0.012  Score=61.41  Aligned_cols=38  Identities=16%  Similarity=0.273  Sum_probs=27.6

Q ss_pred             ecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHH
Q 038595          352 ATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDL  394 (534)
Q Consensus       352 ~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~  394 (534)
                      +..|..|+++|.||--...+...     ..-+|++|++.+.++
T Consensus        16 i~~Tn~C~~~C~fC~~~~~~~~~-----~~ls~eei~~~~~~~   53 (336)
T PRK06245         16 IPLTYECRNRCGYCTFRRDPGQP-----SLLSPEEVKEILRRG   53 (336)
T ss_pred             eeccccccCCCccCCCcCCCCcc-----CcCCHHHHHHHHHHH
Confidence            45688999999999865443221     157999999988654

>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=95.99  E-value=0.03  Score=62.36  Aligned_cols=118  Identities=22%  Similarity=0.407  Sum_probs=73.5

Q ss_pred             ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCCC
Q 038595          356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSND  435 (534)
Q Consensus       356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (534)
                      --|+++|.||-.+.+.  | .  +...+|++|++++..+.    .  .|    |.+|+|+|--                 
T Consensus       220 ~GC~~~CsFC~vp~~r--G-~--~Rsr~~e~Ii~Ei~~l~----~--~G----~keI~L~g~n-----------------  267 (509)
T PRK14327        220 YGCDKFCTYCIVPYTR--G-K--ERSRRPEDIIQEVRHLA----R--QG----YKEITLLGQN-----------------  267 (509)
T ss_pred             CCCCCCCcCCcccccC--C-C--CeeCCHHHHHHHHHHHH----H--CC----CcEEEEEeec-----------------
Confidence            3599999999876433  2 2  24578999999886532    2  13    5677775421                 


Q ss_pred             CCcccccccHHHhhhccCCceEEEeecCCCCC--CccHHHHHHHHHhcCCc-EEEEc-CCC-C-HHHHhhcC--C--Cce
Q 038595          436 GEEKEGGVTLERLNEGLTPRHCALSLVGEPIM--YPEINTLVDELHRRRIS-TFLVT-NAQ-F-PDKIKLLK--P--VTQ  505 (534)
Q Consensus       436 ~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlL--yp~L~elI~~lk~~gi~-~~LvT-NGt-l-pe~l~~L~--~--v~q  505 (534)
                                             +...|..+-  ...|.+|++.+++.++. +.+.| |-. + ++.++.+.  +  +..
T Consensus       268 -----------------------~~~yg~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~P~~i~deli~~m~~~g~~~~~  324 (509)
T PRK14327        268 -----------------------VNAYGKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSHPRDFDDHLIEVLAKGGNLVEH  324 (509)
T ss_pred             -----------------------cccCcccccccchHHHHHHHHHHhCCCceEEEeecCcccCCHHHHHHHHhcCCccce
Confidence                                   011122221  13477888888877664 44443 211 1 34444443  2  568


Q ss_pred             EEEEeeCCCHHHHHhhcCCCCCc
Q 038595          506 LYVSVDAATKDSLKAIDRPLFGD  528 (534)
Q Consensus       506 lyvSlDA~~~e~y~~I~rP~~~~  528 (534)
                      +.+.|++.+.+.+++++|....+
T Consensus       325 l~lgvQSgsd~vLk~M~R~~t~e  347 (509)
T PRK14327        325 IHLPVQSGSTEVLKIMARKYTRE  347 (509)
T ss_pred             EEeccCCCCHHHHHhcCCCCCHH
Confidence            99999999999999999976543

>PRK08444 hypothetical protein; Provisional

Probab=95.97  E-value=0.013  Score=62.25  Aligned_cols=128  Identities=12%  Similarity=0.194  Sum_probs=79.8

Q ss_pred             eeeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeecccccccccccc
Q 038595          348 RCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAI  427 (534)
Q Consensus       348 ~c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~  427 (534)
                      .|.-+.+|+.|.++|.||--...+.....+  . -+|++|++.+.+.     +. .|                       
T Consensus        49 ~n~~In~TN~C~~~C~FCaf~~~~~~~~~y--~-ls~eeI~~~a~~a-----~~-~G-----------------------   96 (353)
T PRK08444         49 VNRHINPTNICADVCKFCAFSAHRKNPNPY--T-MSHEEILEIVKNS-----VK-RG-----------------------   96 (353)
T ss_pred             ecCCcccccccccCCccCCCccCCCCCccc--c-CCHHHHHHHHHHH-----HH-CC-----------------------
Confidence            345567799999999999886544333333  3 4899999988753     21 12                       


Q ss_pred             ccCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCC-CccHHHHHHHHHhc--CCcEEE-----------EcCCCC
Q 038595          428 DKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIM-YPEINTLVDELHRR--RISTFL-----------VTNAQF  493 (534)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlL-yp~L~elI~~lk~~--gi~~~L-----------vTNGtl  493 (534)
                                                .+.+.|.+.+-|-+ ..++.++|+.+|+.  ++.+..           .++-+.
T Consensus        97 --------------------------~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~  150 (353)
T PRK08444         97 --------------------------IKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSY  150 (353)
T ss_pred             --------------------------CCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCH
Confidence                                      23344444455554 24678899999975  566665           344455


Q ss_pred             HHHHhhcCC--CceEEE-EeeCCCHHHHHhhcCCCC-Cchhhhc
Q 038595          494 PDKIKLLKP--VTQLYV-SVDAATKDSLKAIDRPLF-GDFWERF  533 (534)
Q Consensus       494 pe~l~~L~~--v~qlyv-SlDA~~~e~y~~I~rP~~-~~~w~~~  533 (534)
                      .+.++.|+.  ++.+-- +-...+++.+++|+.... .+=|.++
T Consensus       151 ~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i  194 (353)
T PRK08444        151 EEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEI  194 (353)
T ss_pred             HHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHH
Confidence            788888886  554332 344446777799995332 2556543

>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=95.85  E-value=0.043  Score=59.54  Aligned_cols=114  Identities=20%  Similarity=0.264  Sum_probs=69.7

Q ss_pred             ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccccccccccccCCCC
Q 038595          356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYFGTVSSAIDKQIPS  433 (534)
Q Consensus       356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~  433 (534)
                      .-|+++|.||--+...  | .+  ...+|++|++++..+    +.  .|    |.+|+|+|  |+.+             
T Consensus       154 rGC~~~CsFC~~p~~~--g-~~--rsr~~e~V~~Ei~~l----~~--~g----~~eI~l~d~~~~~y-------------  205 (437)
T PRK14331        154 RGCDKKCTYCVVPKTR--G-KE--RSRRLGSILDEVQWL----VD--DG----VKEIHLIGQNVTAY-------------  205 (437)
T ss_pred             cCcCCCCccCCcccCC--C-Cc--ccCCHHHHHHHHHHH----HH--CC----CeEEEEeeeccccc-------------
Confidence            4599999999775432  2 22  346899999988643    22  23    56788853  2222             


Q ss_pred             CCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CC-cEEEEcCC---CCHHHHhhcCC----Cc
Q 038595          434 NDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RI-STFLVTNA---QFPDKIKLLKP----VT  504 (534)
Q Consensus       434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi-~~~LvTNG---tlpe~l~~L~~----v~  504 (534)
                                                   |.-+..+.+.+|++.+.+. |+ .+.+.+.-   ..++.++.+..    +.
T Consensus       206 -----------------------------~~~~~~~~~~~Ll~~l~~~~g~~~i~~~~~~p~~l~~ell~~~~~~~~~~~  256 (437)
T PRK14331        206 -----------------------------GKDIGDVPFSELLYAVAEIDGVERIRFTTGHPRDLDEDIIKAMADIPQVCE  256 (437)
T ss_pred             -----------------------------cCCCCCCCHHHHHHHHhcCCCccEEEEeccCcccCCHHHHHHHHcCCccCC
Confidence                                         2111113466677666654 44 24443311   12455554432    57


Q ss_pred             eEEEEeeCCCHHHHHhhcCCCC
Q 038595          505 QLYVSVDAATKDSLKAIDRPLF  526 (534)
Q Consensus       505 qlyvSlDA~~~e~y~~I~rP~~  526 (534)
                      .+.+.+++.+.+.+++++|+..
T Consensus       257 ~l~igiqSgsd~vLk~m~R~~t  278 (437)
T PRK14331        257 HLHLPFQAGSDRILKLMDRGYT  278 (437)
T ss_pred             ceecccccCChHHHHHcCCCCC
Confidence            8999999999999999999864

>PRK07379 coproporphyrinogen III oxidase; Provisional

Probab=95.67  E-value=0.09  Score=56.53  Aligned_cols=69  Identities=17%  Similarity=0.312  Sum_probs=54.5

Q ss_pred             EEeec-CCCCCCc--cHHHHHHHHHhc-CC----cEEEEcCC-CC-HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCC
Q 038595          458 ALSLV-GEPIMYP--EINTLVDELHRR-RI----STFLVTNA-QF-PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       458 alSl~-GEPlLyp--~L~elI~~lk~~-gi----~~~LvTNG-tl-pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~  525 (534)
                      +|-+. |.|++.|  +|.++++.+++. ++    .+.+.+|- ++ ++.++.|..  ++.+.|-|++.+.+.++.+.|++
T Consensus        69 ~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~  148 (400)
T PRK07379         69 TVFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSH  148 (400)
T ss_pred             EEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCC
Confidence            44444 8999753  899999999875 43    36677774 33 677887775  89999999999999999999986


Q ss_pred             C
Q 038595          526 F  526 (534)
Q Consensus       526 ~  526 (534)
                      .
T Consensus       149 ~  149 (400)
T PRK07379        149 R  149 (400)
T ss_pred             C
Confidence            4

>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional

Probab=95.63  E-value=0.83  Score=44.62  Aligned_cols=152  Identities=12%  Similarity=0.111  Sum_probs=90.1

Q ss_pred             CcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCcc---C-------cCCCCeEEEEeccCCCCCCchHHHHH
Q 038595           68 NKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPE---D-------LSKEALVLIVASSWEDGKPPEAAKFF  137 (534)
Q Consensus        68 ~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~---d-------L~~~~lvIfv~STYg~G~pPdna~~F  137 (534)
                      .+++|++++-...... ++++...+.+.+..+++.||...-++   |       |...+.+||..|.|..+.|+ -.+.+
T Consensus         6 ~kiLiI~aHP~~~~S~-~n~~l~~~~~~~~~v~~~DL~~~~p~~~~d~~~eq~~l~~aD~iV~~fPl~w~~~Pa-~LK~w   83 (184)
T PRK04930          6 PKVLLLYAHPESQDSV-ANRVLLKPAQQLEHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLYTYSCPA-LLKEW   83 (184)
T ss_pred             CEEEEEECCCCcccCH-HHHHHHHHHHcCCceEEEECcccCCCCCCCHHHHHHHHHhCCEEEEEcCccccCCcH-HHHHH
Confidence            3599999998765322 44443333344567899998765332   1       34678999999999977654 46666


Q ss_pred             HHHHHhhcCccccc--ccCCCCCeEEEE-EecCcc--hH-HHHHH-----HHHHHHHHHHHcCCceecceEEeeCCCCCc
Q 038595          138 MNWIDESANDFRVG--SLLLSNCKFAVF-GVGSKS--YE-KTFNM-----VAKDLSKKMRELGAGEVLPVVEGDVDGGEL  206 (534)
Q Consensus       138 le~L~e~~~DFRv~--~~~Lkgl~yAVF-GLGDs~--Y~-e~Fc~-----aAK~LDk~L~kLGA~rV~plg~gD~~~g~~  206 (534)
                      ++..-..  .|..+  ...|+|+++.|+ ..|...  |. +.|+.     .-.-+...+.-+|.+.+-|....+.... .
T Consensus        84 iD~V~~~--g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~~~-~  160 (184)
T PRK04930         84 LDRVLSR--GFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSPIIIYWARRQ-S  160 (184)
T ss_pred             HHHHHhc--CcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCcEEEecCCCC-C
Confidence            5554332  13222  235899887765 455543  32 12221     2222334445568877766666555432 2


Q ss_pred             HHHHHHHHHHHHHHHHhc
Q 038595          207 DVVFEDWSKRVVAILKSG  224 (534)
Q Consensus       207 e~~f~eW~~~L~~~L~~~  224 (534)
                      +++.++|.++..+.|...
T Consensus       161 ~~~~~~~~~~~~~~l~~~  178 (184)
T PRK04930        161 PEELASHARAYGDWLANP  178 (184)
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            456778887777777653

>PRK08445 hypothetical protein; Provisional

Probab=95.59  E-value=0.047  Score=57.86  Aligned_cols=116  Identities=11%  Similarity=0.110  Sum_probs=75.8

Q ss_pred             eeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccc
Q 038595          349 CMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAID  428 (534)
Q Consensus       349 c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~  428 (534)
                      |.-+..|..|+++|.||-....+..+..+   .-+|++|++.+.+.     +.+ |.                       
T Consensus        43 ~~~in~Tn~C~~~C~FCa~~~~~~~~~~y---~l~~eeI~~~~~~a-----~~~-g~-----------------------   90 (348)
T PRK08445         43 DRNINYTNICWVDCKFCAFYRHLKEDDAY---ILSFEEIDKKIEEL-----LAI-GG-----------------------   90 (348)
T ss_pred             ccccccccccccCCccCCCccCCCCCCCe---eCCHHHHHHHHHHH-----HHc-CC-----------------------
Confidence            44467799999999999876543222222   23888999988653     222 21                       


Q ss_pred             cCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCC--ccHHHHHHHHHhcCCcEEEE--cC----------C-CC
Q 038595          429 KQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMY--PEINTLVDELHRRRISTFLV--TN----------A-QF  493 (534)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLy--p~L~elI~~lk~~gi~~~Lv--TN----------G-tl  493 (534)
                                                +.+.+++ |.+.-+  .++.++++.+++..-.+.+.  |-          + +.
T Consensus        91 --------------------------~~i~~~g-g~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~  143 (348)
T PRK08445         91 --------------------------TQILFQG-GVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISI  143 (348)
T ss_pred             --------------------------CEEEEec-CCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCH
Confidence                                      1233344 444443  37889999999874333332  11          1 23


Q ss_pred             HHHHhhcCC--CceE-EEEeeCCCHHHHHhhcC
Q 038595          494 PDKIKLLKP--VTQL-YVSVDAATKDSLKAIDR  523 (534)
Q Consensus       494 pe~l~~L~~--v~ql-yvSlDA~~~e~y~~I~r  523 (534)
                      ++.+++|.+  ++.+ ++-+...+.+..++++.
T Consensus       144 ~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~p  176 (348)
T PRK08445        144 KEVLERLQAKGLSSIPGAGAEILSDRVRDIIAP  176 (348)
T ss_pred             HHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCC
Confidence            788999986  7877 58899999999999864

>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=95.58  E-value=0.056  Score=59.04  Aligned_cols=114  Identities=18%  Similarity=0.317  Sum_probs=72.9

Q ss_pred             ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccccccccccccCCCC
Q 038595          356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYFGTVSSAIDKQIPS  433 (534)
Q Consensus       356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~  433 (534)
                      --|+++|.||-.+...  | .  ....+|++|++++..+    ++  .|    |.+|+|+|  +..              
T Consensus       157 rGC~~~CsFC~ip~~r--G-~--~rsr~~e~Vv~Ei~~l----~~--~G----~~ei~l~~~~~~~--------------  207 (445)
T PRK14340        157 RGCNNMCAFCVVPFTR--G-R--ERSHPFASVLDEVRAL----AE--AG----YREITLLGQNVNS--------------  207 (445)
T ss_pred             cCCCCCCCCCCccccc--C-C--CcCCCHHHHHHHHHHH----HH--CC----CeEEEEeecccch--------------
Confidence            4599999999876432  1 2  3457899999988543    22  13    56777742  211              


Q ss_pred             CCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc--CCcEEEEcC-C--CCHHHHhhcCC----Cc
Q 038595          434 NDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR--RISTFLVTN-A--QFPDKIKLLKP----VT  504 (534)
Q Consensus       434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~--gi~~~LvTN-G--tlpe~l~~L~~----v~  504 (534)
                                                  .|.+.....|.+|++.+++.  +..+.+.+- -  -.++.++.|..    +.
T Consensus       208 ----------------------------y~d~~~~~~l~~Ll~~l~~~~~~~rir~~~~~p~~l~~ell~~~~~~~~g~~  259 (445)
T PRK14340        208 ----------------------------YSDPEAGADFAGLLDAVSRAAPEMRIRFTTSHPKDISESLVRTIAARPNICN  259 (445)
T ss_pred             ----------------------------hhccCCCchHHHHHHHHhhcCCCcEEEEccCChhhcCHHHHHHHHhCCCCCC
Confidence                                        14444444677888887764  344555441 1  12455554432    67


Q ss_pred             eEEEEeeCCCHHHHHhhcCCCC
Q 038595          505 QLYVSVDAATKDSLKAIDRPLF  526 (534)
Q Consensus       505 qlyvSlDA~~~e~y~~I~rP~~  526 (534)
                      .+.+.|.+.+.+.+++++|+..
T Consensus       260 ~l~iglQSgsd~vLk~m~R~~t  281 (445)
T PRK14340        260 HIHLPVQSGSSRMLRRMNRGHT  281 (445)
T ss_pred             eEEECCCcCCHHHHHhcCCCCC
Confidence            8999999999999999999864

>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=95.42  E-value=0.065  Score=58.38  Aligned_cols=120  Identities=18%  Similarity=0.302  Sum_probs=70.2

Q ss_pred             ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccccccccccccCCCC
Q 038595          356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYFGTVSSAIDKQIPS  433 (534)
Q Consensus       356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~  433 (534)
                      .-|+++|.||-.+...   ..+  ...+|++|++++..+    ++  .|    +.+|+|+|  |..+|.-     .    
T Consensus       156 rGC~~~CsFC~ip~~r---G~~--rsr~~e~Iv~Ei~~l----~~--~G----~~eI~l~~~~~~~yg~d-----~----  211 (446)
T PRK14337        156 QGCDNFCAYCIVPYTR---GRQ--KSRSSAAVLDECRAL----VD--RG----AREITLLGQNVNSYGQD-----K----  211 (446)
T ss_pred             cCCCCCCcCCCcccCC---CCC--eeCCHHHHHHHHHHH----HH--CC----CeEEEEEecCccccccC-----C----
Confidence            4599999999765432   222  457899999988643    22  13    56788865  3333210     0    


Q ss_pred             CCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CCc-EEEEc-CC--CCHHHHhhcCC----Cc
Q 038595          434 NDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RIS-TFLVT-NA--QFPDKIKLLKP----VT  504 (534)
Q Consensus       434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi~-~~LvT-NG--tlpe~l~~L~~----v~  504 (534)
                                                  .+.+   ..|.+|++.+.+. |+. +.+.+ +-  ..++.++.+..    +.
T Consensus       212 ----------------------------~~~~---~~l~~Ll~~l~~~~g~~~ir~~~~~p~~i~~ell~~l~~~~~~~~  260 (446)
T PRK14337        212 ----------------------------HGDG---TSFAQLLHKVAALPGLERLRFTTPHPKDIAPEVIEAFGELPNLCP  260 (446)
T ss_pred             ----------------------------CCCC---ccHHHHHHHHHhcCCCcEEEEccCCcccCCHHHHHHHHhCCcccC
Confidence                                        0111   1345555555543 432 33322 11  12455544432    57


Q ss_pred             eEEEEeeCCCHHHHHhhcCCCCCchh
Q 038595          505 QLYVSVDAATKDSLKAIDRPLFGDFW  530 (534)
Q Consensus       505 qlyvSlDA~~~e~y~~I~rP~~~~~w  530 (534)
                      ++.+.|++.+.+.+++++|+...+-|
T Consensus       261 ~l~iglQSgsd~vLk~M~R~~t~e~~  286 (446)
T PRK14337        261 RLHLPLQSGSDRILKAMGRKYDMARY  286 (446)
T ss_pred             eEEECCCCCCHHHHHhCCCCCCHHHH
Confidence            89999999999999999998654433

>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]

Probab=95.38  E-value=0.022  Score=62.05  Aligned_cols=187  Identities=13%  Similarity=0.078  Sum_probs=120.1

Q ss_pred             hhhhhhhhhHHHHHhhchhhhhhcCCCC---CCCCCCCCCCCcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCC
Q 038595           30 NCSRLQEATTFYFAYKSRRLNKFLRHSD---YRKKPENPNPNKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQT  106 (534)
Q Consensus        30 ~~~~~l~a~~~y~~~k~~~~~~~~~~~~---~~~~~~~~~~~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d  106 (534)
                      -+..+|+.+.+|..|..++..+.++-..   -..++.-+--.-++|.=+=++|-.-.+|+.|++.+...-+   +.++  
T Consensus       317 d~pevil~gal~lhy~mikqmkgvpgvk~Er~~ea~evrhcalslVgepi~yp~in~f~k~lH~k~issfl---vtna--  391 (601)
T KOG1160|consen  317 DAPEVILKGALYLHYNMIKQMKGVPGVKAERFEEAEEVRHCALSLVGEPIMYPEINPFAKLLHQKLISSFL---VTNA--  391 (601)
T ss_pred             CCchhhhHHHHHHHHHHHHHhhcCCCcCHHHHHhhhhhhhheeeeecccccchhhhHHHHHHHhccchHHh---cccc--
Confidence            4567999999999999999875553221   2222222222335777788889999999999998754321   1111  


Q ss_pred             CCccCcC----CCCeEEE---EeccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcc-hHHHHHHHH
Q 038595          107 YEPEDLS----KEALVLI---VASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKS-YEKTFNMVA  178 (534)
Q Consensus       107 ~d~~dL~----~~~lvIf---v~STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~-Y~e~Fc~aA  178 (534)
                      ..++++.    -..++++   .+-|.-.+.+.+..++||+||.+...|.+ .+.+..-.++.++|.||+. -+..||.++
T Consensus       392 q~pe~~rnvk~vtqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~lk-~K~qrtvyRlTlVkg~n~dd~~Ayfnlv~  470 (601)
T KOG1160|consen  392 QFPEDIRNVKPVTQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKALK-KKQQRTVYRLTLVKGWNSDDLPAYFNLVS  470 (601)
T ss_pred             cChHHHhchhhhheeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHHHH-HhhcceEEEEEEeccccccccHHHHHHHh
Confidence            1122221    1234444   44455557777789999999998877765 2334444689999999985 456899999


Q ss_pred             HHHHHHHHHcCCceecceEEeeCC--CCCcHHHHHHHHHHHHHHHH
Q 038595          179 KDLSKKMRELGAGEVLPVVEGDVD--GGELDVVFEDWSKRVVAILK  222 (534)
Q Consensus       179 K~LDk~L~kLGA~rV~plg~gD~~--~g~~e~~f~eW~~~L~~~L~  222 (534)
                      +-+-.+++-+|++...+.-.-.-.  +-...++|.++..+|...+.
T Consensus       471 rglp~fieVkGvty~ges~~s~lTm~nvp~~Ee~v~Fv~eL~~l~~  516 (601)
T KOG1160|consen  471 RGLPDFIEVKGVTYCGESELSNLTMTNVPWHEEVVEFVFELVDLLQ  516 (601)
T ss_pred             ccCCceEEEeceeEecccccCcccccCccHHHHHHHHHHHHHHhhh
Confidence            999999999999876543221111  11235677788777754433

>PRK09058 coproporphyrinogen III oxidase; Provisional

Probab=95.24  E-value=0.1  Score=57.06  Aligned_cols=70  Identities=14%  Similarity=0.173  Sum_probs=55.3

Q ss_pred             EEee-cCCCCCCc--cHHHHHHHHHhc-C----CcEEEEcCCC-C-HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCC
Q 038595          458 ALSL-VGEPIMYP--EINTLVDELHRR-R----ISTFLVTNAQ-F-PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       458 alSl-~GEPlLyp--~L~elI~~lk~~-g----i~~~LvTNGt-l-pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~  525 (534)
                      +|.+ .|-|++.+  .|.++++.+++. .    ..+.+.+|-. + ++.++.|..  ++++.+-|++.+.+..+.+.|++
T Consensus       117 ~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~  196 (449)
T PRK09058        117 AVYFGGGTPTALSAEDLARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKD  196 (449)
T ss_pred             EEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCC
Confidence            3444 49999864  899999999874 3    3467888754 3 778877775  89999999999999999999986


Q ss_pred             CC
Q 038595          526 FG  527 (534)
Q Consensus       526 ~~  527 (534)
                      ..
T Consensus       197 ~~  198 (449)
T PRK09058        197 DR  198 (449)
T ss_pred             CH
Confidence            53

>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=95.24  E-value=0.099  Score=56.78  Aligned_cols=117  Identities=20%  Similarity=0.376  Sum_probs=69.2

Q ss_pred             ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeecc--ccccccccccccCCCC
Q 038595          356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDF--FYFGTVSSAIDKQIPS  433 (534)
Q Consensus       356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~  433 (534)
                      .-|+++|.||-.+...  | .+  ...+|++|++++..+.    +  +|    |.+|+|+|-  ..+|.     |  +  
T Consensus       155 rGC~~~CsfC~~p~~~--g-~~--Rsr~~e~Iv~Ei~~l~----~--~G----~~ei~l~~~~~~~yg~-----d--~--  210 (439)
T PRK14328        155 YGCNNFCTYCIVPYVR--G-RE--RSRKPEDIIAEIKELV----S--EG----YKEVTLLGQNVNSYGK-----D--L--  210 (439)
T ss_pred             hCcCCCCCCCCccccc--C-Cc--ccCCHHHHHHHHHHHH----H--CC----CcEEEEeccccCcCCc-----C--C--
Confidence            4599999999876433  2 22  3468899998886532    2  13    456777431  11110     0  0  


Q ss_pred             CCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CCc-EEEEc-CCC--CHHHHhhcCC----Cc
Q 038595          434 NDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RIS-TFLVT-NAQ--FPDKIKLLKP----VT  504 (534)
Q Consensus       434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi~-~~LvT-NGt--lpe~l~~L~~----v~  504 (534)
                                                    .+  .+.+.+|++.+.+. |+. +.+.+ |-.  .++.++.|..    +.
T Consensus       211 ------------------------------~~--~~~l~~Ll~~l~~~~~~~~ir~~~~~P~~i~~ell~~l~~~~~~~~  258 (439)
T PRK14328        211 ------------------------------EE--KIDFADLLRRVNEIDGLERIRFMTSHPKDLSDDLIEAIADCDKVCE  258 (439)
T ss_pred             ------------------------------CC--CcCHHHHHHHHHhcCCCcEEEEecCChhhcCHHHHHHHHhCCCcCc
Confidence                                          00  13466677666653 432 33322 221  2455555542    56


Q ss_pred             eEEEEeeCCCHHHHHhhcCCCCCc
Q 038595          505 QLYVSVDAATKDSLKAIDRPLFGD  528 (534)
Q Consensus       505 qlyvSlDA~~~e~y~~I~rP~~~~  528 (534)
                      ++.+.+++.+.+.+++++|+...+
T Consensus       259 ~l~iglQSgsd~vLk~M~R~~~~~  282 (439)
T PRK14328        259 HIHLPVQSGSNRILKKMNRHYTRE  282 (439)
T ss_pred             eeeeCCCcCCHHHHHhCCCCCCHH
Confidence            899999999999999999986543

>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]

Probab=95.20  E-value=0.041  Score=59.01  Aligned_cols=42  Identities=21%  Similarity=0.348  Sum_probs=31.6

Q ss_pred             eeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHH
Q 038595          350 MEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDL  394 (534)
Q Consensus       350 ~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~  394 (534)
                      +-+.+|+.|.|+|.||--...+  +.. ....-+|++|.+.+.+.
T Consensus        61 ~~in~TN~C~~~C~fCaF~~~~--~~~-~~y~Ls~eeI~~~~~~~  102 (370)
T COG1060          61 RNINYTNICVNDCTFCAFYRKP--GDP-KAYTLSPEEILEEVREA  102 (370)
T ss_pred             ecCCcchhhcCCCCccccccCC--CCc-cccccCHHHHHHHHHHH
Confidence            4567899999999999876655  222 23457899999988764

>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB

Probab=95.17  E-value=0.083  Score=57.36  Aligned_cols=121  Identities=19%  Similarity=0.314  Sum_probs=69.4

Q ss_pred             ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccc-cccccccccCCC
Q 038595          356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYF-GTVSSAIDKQIP  432 (534)
Q Consensus       356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~-~~~~~~~~~~~~  432 (534)
                      .-|+++|.||--+...  | .+  ...+|++|++++..+..      +|    |.+|+|.|  +..+ |.          
T Consensus       153 rGC~~~CsfC~~~~~~--G-~~--rsr~~e~I~~Ei~~l~~------~g----~~ei~l~~~~~~~y~g~----------  207 (438)
T TIGR01574       153 IGCNKFCTYCIVPYTR--G-DE--ISRPFDDILQEVQKLAE------KG----VREITLLGQNVNAYRGK----------  207 (438)
T ss_pred             cCCCCCCCCCCeeeec--C-CC--cccCHHHHHHHHHHHHH------cC----CeEEEEEecccCCccCC----------
Confidence            4599999999865432  2 22  34789999998865432      23    45677744  1111 11          


Q ss_pred             CCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CCc-EEEE-cCCC--CHHHHhhcCC----C
Q 038595          433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RIS-TFLV-TNAQ--FPDKIKLLKP----V  503 (534)
Q Consensus       433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi~-~~Lv-TNGt--lpe~l~~L~~----v  503 (534)
                           .                      +.|   -.+.+.+|++.+.+. |+. +.+. .|..  .++.++.|..    +
T Consensus       208 -----d----------------------~~~---~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~l~~~g~~~  257 (438)
T TIGR01574       208 -----D----------------------FEG---KTMDFSDLLRELSTIDGIERIRFTSSHPLDFDDDLIEVFANNPKLC  257 (438)
T ss_pred             -----C----------------------CCC---CcccHHHHHHHHHhcCCceEEEEecCCcccCCHHHHHHHHhCCCcc
Confidence                 0                      000   012355666666543 442 2221 1221  1444544432    5


Q ss_pred             ceEEEEeeCCCHHHHHhhcCCCCCchhh
Q 038595          504 TQLYVSVDAATKDSLKAIDRPLFGDFWE  531 (534)
Q Consensus       504 ~qlyvSlDA~~~e~y~~I~rP~~~~~w~  531 (534)
                      ..+.+.|++.+.+.+++++|+...+-|.
T Consensus       258 ~~l~iglQSgsd~vLk~m~R~~t~~~~~  285 (438)
T TIGR01574       258 KSMHLPVQSGSSEILKLMKRGYTREWYL  285 (438)
T ss_pred             CceeeCCCcCCHHHHHhcCCCCCHHHHH
Confidence            7899999999999999999986544443

Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.

>PRK08629 coproporphyrinogen III oxidase; Provisional

Probab=95.13  E-value=0.12  Score=56.45  Aligned_cols=65  Identities=23%  Similarity=0.313  Sum_probs=51.2

Q ss_pred             cCCCCCCc-cHHHHHHHHHhc-CC-cEEEEcCCCC--HHHHhhcCC-CceEEEEeeCCCHHHHHhhcCCCC
Q 038595          462 VGEPIMYP-EINTLVDELHRR-RI-STFLVTNAQF--PDKIKLLKP-VTQLYVSVDAATKDSLKAIDRPLF  526 (534)
Q Consensus       462 ~GEPlLyp-~L~elI~~lk~~-gi-~~~LvTNGtl--pe~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP~~  526 (534)
                      .|-|++.+ +|.++++.+++. ++ .+.+.+|-..  ++.++.|.. ++.+.|-|.+.|.+..++++|++.
T Consensus       109 GGTPs~l~~~L~~ll~~i~~~f~i~eis~E~~P~~lt~e~L~~l~~~vnrlsiGVQS~~d~vLk~~gR~h~  179 (433)
T PRK08629        109 GGTTTILEDELAKTLELAKKLFSIKEVSCESDPNHLDPPKLKQLKGLIDRLSIGVQSFNDDILKMVDRYEK  179 (433)
T ss_pred             CCccccCHHHHHHHHHHHHHhCCCceEEEEeCcccCCHHHHHHHHHhCCeEEEecCcCCHHHHHHcCCCCC
Confidence            38898865 688888888875 55 3777788664  676766655 899999999999999999999753

>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=95.09  E-value=0.084  Score=57.29  Aligned_cols=117  Identities=22%  Similarity=0.278  Sum_probs=69.0

Q ss_pred             ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccc-cccccccccCCC
Q 038595          356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYF-GTVSSAIDKQIP  432 (534)
Q Consensus       356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~-~~~~~~~~~~~~  432 (534)
                      --|+++|.||-.+...  | .++  ..+|++|++++..+.    .+  |    +.+|+|.|  |+.+ |.     +    
T Consensus       155 rGCp~~CsFC~~p~~~--G-~~~--sr~~e~Iv~Ei~~l~----~~--g----~~ei~l~d~~~~~y~~~-----~----  210 (444)
T PRK14325        155 EGCDKYCTFCVVPYTR--G-EEV--SRPVDDVLAEVAQLA----EQ--G----VREITLLGQNVNAYRGE-----G----  210 (444)
T ss_pred             hCCCCCCCccccCccc--C-Ccc--cCCHHHHHHHHHHHH----HC--C----CcEEEEEeeccccccCC-----C----
Confidence            3599999999775332  2 222  478999999886432    21  4    34677753  2111 10     0    


Q ss_pred             CCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CCc-EEEEc-CCC--CHHHHhhcCC----C
Q 038595          433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RIS-TFLVT-NAQ--FPDKIKLLKP----V  503 (534)
Q Consensus       433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi~-~~LvT-NGt--lpe~l~~L~~----v  503 (534)
                                                  +.|.+   ..+.+|++.+.+. |+. +.+.+ +..  .++.++.+..    +
T Consensus       211 ----------------------------~~~~~---~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~l~~~~~~~  259 (444)
T PRK14325        211 ----------------------------PDGEI---ADFAELLRLVAAIDGIERIRYTTSHPRDFTDDLIEAYADLPKLV  259 (444)
T ss_pred             ----------------------------CCCCc---chHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHHcCCccc
Confidence                                        00100   2466677776664 442 44432 222  2455554432    5


Q ss_pred             ceEEEEeeCCCHHHHHhhcCCCCC
Q 038595          504 TQLYVSVDAATKDSLKAIDRPLFG  527 (534)
Q Consensus       504 ~qlyvSlDA~~~e~y~~I~rP~~~  527 (534)
                      ..+.+.+++.+.+.++.++|+...
T Consensus       260 ~~l~igiqSgs~~vLk~m~R~~~~  283 (444)
T PRK14325        260 PFLHLPVQSGSDRILKAMNRGHTA  283 (444)
T ss_pred             CceeccCCcCCHHHHHhCCCCCCH
Confidence            789999999999999999998643

>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]

Probab=95.04  E-value=0.055  Score=57.36  Aligned_cols=108  Identities=16%  Similarity=0.277  Sum_probs=75.9

Q ss_pred             cccccccccccCCC--CCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCC
Q 038595          357 ACANKCVFCWRHHT--NPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSN  434 (534)
Q Consensus       357 ~C~~~C~~C~r~~~--~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (534)
                      .|+.+|-||.....  +++...   .+.++++|++.|+.+     ++. |.                             
T Consensus        60 ~c~edC~yC~qS~~~~~~~~~~---~l~~~eeIle~Ak~a-----k~~-Ga-----------------------------  101 (335)
T COG0502          60 CCPEDCAYCSQSARYKTGVKAR---KLMEVEEILEAAKKA-----KAA-GA-----------------------------  101 (335)
T ss_pred             CCCCCCCCccccccCcCCCchh---hcCCHHHHHHHHHHH-----HHc-CC-----------------------------
Confidence            48999999998643  334333   468899999999653     433 21                             


Q ss_pred             CCCcccccccHHHhhhccCCceEEEeec-CCCCCCccHHHHHHHHH-hcCCcEEEEcCCCC-HHHHhhcCC--CceEEEE
Q 038595          435 DGEEKEGGVTLERLNEGLTPRHCALSLV-GEPIMYPEINTLVDELH-RRRISTFLVTNAQF-PDKIKLLKP--VTQLYVS  509 (534)
Q Consensus       435 ~~~~~~~~~~~~~~~ea~~~~h~alSl~-GEPlLyp~L~elI~~lk-~~gi~~~LvTNGtl-pe~l~~L~~--v~qlyvS  509 (534)
                                         .+.|-++.. |-+---+++.++|+.+| +.|+.+. .|-|.+ ++.+++|..  |+...--
T Consensus       102 -------------------~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c-~slG~l~~eq~~~L~~aGvd~ynhN  161 (335)
T COG0502         102 -------------------TRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVC-ASLGMLTEEQAEKLADAGVDRYNHN  161 (335)
T ss_pred             -------------------ceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHh-hccCCCCHHHHHHHHHcChhheecc
Confidence                               123333332 31433368888999999 5686654 566776 788999986  8999999


Q ss_pred             eeCCCHHHHHhhcC
Q 038595          510 VDAATKDSLKAIDR  523 (534)
Q Consensus       510 lDA~~~e~y~~I~r  523 (534)
                      ||. +++-|.+|+-
T Consensus       162 LeT-s~~~y~~I~t  174 (335)
T COG0502         162 LET-SPEFYENIIT  174 (335)
T ss_pred             ccc-CHHHHcccCC
Confidence            999 9999999985

>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=95.03  E-value=0.089  Score=56.95  Aligned_cols=118  Identities=22%  Similarity=0.316  Sum_probs=70.9

Q ss_pred             ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccccccccccccCCCC
Q 038595          356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYFGTVSSAIDKQIPS  433 (534)
Q Consensus       356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~  433 (534)
                      --|+++|.||--+...  |   +....+|++|++++..+.    .  .|    |.+|+|.|  |..+|.           
T Consensus       132 rGC~~~CsFC~ip~~r--G---~~rsrs~e~Iv~Ei~~l~----~--~G----~~ei~l~~~~~~~yg~-----------  185 (418)
T PRK14336        132 QGCDNFCTYCVVPYRR--G---REKSRSIAEIGCEVAELV----R--RG----SREVVLLGQNVDSYGH-----------  185 (418)
T ss_pred             cCCCCCCccCCccccC--C---CCccCCHHHHHHHHHHHH----H--CC----CeEEEEEecCcccccc-----------
Confidence            3599999999765432  1   224678999999986543    2  13    56788752  222221           


Q ss_pred             CCCCcccccccHHHhhhccCCceEEEeecCCCC-CCccHHHHHHHHHhc-CC-cEEEEc-CCC--CHHHHhhcCC----C
Q 038595          434 NDGEEKEGGVTLERLNEGLTPRHCALSLVGEPI-MYPEINTLVDELHRR-RI-STFLVT-NAQ--FPDKIKLLKP----V  503 (534)
Q Consensus       434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPl-Lyp~L~elI~~lk~~-gi-~~~LvT-NGt--lpe~l~~L~~----v  503 (534)
                                                     .+ -.+.|.+|++.+++. |+ .+.+.+ +-.  .++.++.|..    +
T Consensus       186 -------------------------------d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~i~~ell~~l~~~~~~~  234 (418)
T PRK14336        186 -------------------------------DLPEKPCLADLLSALHDIPGLLRIRFLTSHPKDISQKLIDAMAHLPKVC  234 (418)
T ss_pred             -------------------------------CCCCcccHHHHHHHHHhcCCccEEEEeccChhhcCHHHHHHHHhcCccC
Confidence                                           10 013466677666653 32 343332 211  2444444432    5


Q ss_pred             ceEEEEeeCCCHHHHHhhcCCCCCchh
Q 038595          504 TQLYVSVDAATKDSLKAIDRPLFGDFW  530 (534)
Q Consensus       504 ~qlyvSlDA~~~e~y~~I~rP~~~~~w  530 (534)
                      ..+.+.+++.+.+.+++++|+...+-+
T Consensus       235 ~~l~lglQSgsd~vLk~M~R~~~~~~~  261 (418)
T PRK14336        235 RSLSLPVQAGDDTILAAMRRGYTNQQY  261 (418)
T ss_pred             CceecCCCcCCHHHHHHhCCCCCHHHH
Confidence            789999999999999999998654433

>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=94.99  E-value=0.12  Score=57.41  Aligned_cols=116  Identities=21%  Similarity=0.338  Sum_probs=67.6

Q ss_pred             cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeecc--ccccccccccccCCC
Q 038595          355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDF--FYFGTVSSAIDKQIP  432 (534)
Q Consensus       355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~--~~~~~~~~~~~~~~~  432 (534)
                      +--|+++|.||-.+...  | .  +...+|++|++++..+    +.  .|    +.+|+|+|-  ..+|.-         
T Consensus       164 srGCp~~CsFC~ip~~r--G-~--~rsr~~e~Vv~Ei~~l----~~--~g----~~ei~l~d~n~~~yG~d---------  219 (502)
T PRK14326        164 SVGCNNTCTFCIVPSLR--G-K--EKDRRPGDILAEVQAL----VD--EG----VLEVTLLGQNVNAYGVS---------  219 (502)
T ss_pred             ccCCCCCCccCceeccC--C-C--cccCCHHHHHHHHHHH----HH--CC----CceEEEEeecccccccC---------
Confidence            44599999999886543  2 2  2357899999988543    22  13    567888542  333320         


Q ss_pred             CCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CCc-EEEEc-C--CCCHHHHhhcCC----C
Q 038595          433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RIS-TFLVT-N--AQFPDKIKLLKP----V  503 (534)
Q Consensus       433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi~-~~LvT-N--Gtlpe~l~~L~~----v  503 (534)
                                                  + +.   .+.+.+|++.+.+. |+. +.+.+ +  ...++.++.|..    .
T Consensus       220 ----------------------------~-~~---~~~l~~Ll~~l~~i~~l~~ir~~~~~p~~~~~ell~~m~~~g~~~  267 (502)
T PRK14326        220 ----------------------------F-GD---RGAFSKLLRACGEIDGLERVRFTSPHPAEFTDDVIEAMAETPNVC  267 (502)
T ss_pred             ----------------------------C-CC---HHHHHHHHHHHHhcCCccEEEEeccChhhCCHHHHHHHHhcCCcC
Confidence                                        0 00   01344555555443 332 33322 1  111445544432    4


Q ss_pred             ceEEEEeeCCCHHHHHhhcCCCC
Q 038595          504 TQLYVSVDAATKDSLKAIDRPLF  526 (534)
Q Consensus       504 ~qlyvSlDA~~~e~y~~I~rP~~  526 (534)
                      .++.+.+++.+.+.+++++|+..
T Consensus       268 ~~l~lglQSgsd~iLk~m~R~~t  290 (502)
T PRK14326        268 PQLHMPLQSGSDRVLRAMRRSYR  290 (502)
T ss_pred             CcEEeccCCCCHHHHHhcCCCCC
Confidence            77999999999999999999854

>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=94.97  E-value=0.098  Score=57.44  Aligned_cols=120  Identities=21%  Similarity=0.304  Sum_probs=72.4

Q ss_pred             cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccccccccccccCCC
Q 038595          355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYFGTVSSAIDKQIP  432 (534)
Q Consensus       355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~~~~~~~~~~~~~  432 (534)
                      +.-|+++|.||-.+...  | .  +...+|+.|++++..+    +..  |    |.+|+|+|  +..||..         
T Consensus       175 srGCp~~CsFC~ip~~~--G-~--~rsrs~e~Vv~Ei~~l----~~~--g----~~eI~l~~~~~~~y~~d---------  230 (467)
T PRK14329        175 MRGCDNMCTFCVVPFTR--G-R--ERSRDPESILNEVRDL----FAK--G----YKEVTLLGQNVDSYLWY---------  230 (467)
T ss_pred             ccCcccCCCCCcccccc--C-C--cccCCHHHHHHHHHHH----HHC--C----CeEEEEEeecccccccc---------
Confidence            34599999999765422  2 2  3567899999988643    221  3    56788854  1111110         


Q ss_pred             CCCCCcccccccHHHhhhccCCceEEEeecCCC--CCCccHHHHHHHHHhc--CCcEEEEc-CC--CCHHHHhhcCC---
Q 038595          433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEP--IMYPEINTLVDELHRR--RISTFLVT-NA--QFPDKIKLLKP---  502 (534)
Q Consensus       433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEP--lLyp~L~elI~~lk~~--gi~~~LvT-NG--tlpe~l~~L~~---  502 (534)
                                                   .+.|  ..-..|.+|++.+.+.  +..+.+.+ |.  ..++.++.|..   
T Consensus       231 -----------------------------~~~~~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~m~~~~~  281 (467)
T PRK14329        231 -----------------------------GGGLKKDEAVNFAQLLEMVAEAVPDMRIRFSTSHPKDMTDDVLEVMAKYDN  281 (467)
T ss_pred             -----------------------------cCCccccccccHHHHHHHHHhcCCCcEEEEecCCcccCCHHHHHHHHhCCC
Confidence                                         0111  1113577777777654  34454443 11  12455554432   


Q ss_pred             -CceEEEEeeCCCHHHHHhhcCCCCC
Q 038595          503 -VTQLYVSVDAATKDSLKAIDRPLFG  527 (534)
Q Consensus       503 -v~qlyvSlDA~~~e~y~~I~rP~~~  527 (534)
                       +..+.+.+.+.+.+.++.++|+...
T Consensus       282 g~~~i~iglQSgsd~vLk~m~R~~t~  307 (467)
T PRK14329        282 ICKHIHLPVQSGSDRILKLMNRKYTR  307 (467)
T ss_pred             CCCeEEeCCCcCCHHHHHhcCCCCCH
Confidence             6789999999999999999998643

>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit

Probab=94.85  E-value=0.081  Score=55.24  Aligned_cols=127  Identities=13%  Similarity=0.138  Sum_probs=72.1

Q ss_pred             ecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCC
Q 038595          352 ATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQI  431 (534)
Q Consensus       352 ~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~  431 (534)
                      +..|+.|+++|.||--...+...   .....+|++|++.+.++.     . .|.    .++++.                
T Consensus         8 i~~tn~C~~~C~fCaf~~~~g~~---~~~~l~~eeI~~~a~~~~-----~-~G~----~ei~l~----------------   58 (322)
T TIGR03550         8 IPLTRLCRNRCGYCTFRRPPGEL---EAALLSPEEVLEILRKGA-----A-AGC----TEALFT----------------   58 (322)
T ss_pred             eccccCcCCCCccCCccccCCCc---ccccCCHHHHHHHHHHHH-----H-CCC----CEEEEe----------------
Confidence            34688999999999976544221   233579999999887542     2 132    344431                


Q ss_pred             CCCCCCcccccccH----HHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CCcEEEEcCCCC-HHHHhhcCC--C
Q 038595          432 PSNDGEEKEGGVTL----ERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RISTFLVTNAQF-PDKIKLLKP--V  503 (534)
Q Consensus       432 ~~~~~~~~~~~~~~----~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi~~~LvTNGtl-pe~l~~L~~--v  503 (534)
                               +|..+    +.+.|.++.  ..+    +. ...++.++++.+++. ++...+ +-|.+ ++.++.|..  +
T Consensus        59 ---------~G~~p~~~~~~~~~~l~~--~~~----~~-~~~~~~~~~~~i~~e~~~~~~~-~~g~lt~e~l~~Lk~aG~  121 (322)
T TIGR03550        59 ---------FGEKPEERYPEAREWLAE--MGY----DS-TLEYLRELCELALEETGLLPHT-NPGVMSRDELARLKPVNA  121 (322)
T ss_pred             ---------cCCCccccHHHHHHHHHh--cCC----cc-HHHHHHHHHHHHHHhcCCcccc-CCCCCCHHHHHHHHhhCC
Confidence                     11211    112221111  001    01 135788888888865 654443 33444 677877776  4


Q ss_pred             ceEEEEeeCCCHHHHHhhcCCC
Q 038595          504 TQLYVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       504 ~qlyvSlDA~~~e~y~~I~rP~  525 (534)
                      + ++++++..++..++.++..+
T Consensus       122 ~-~~~~~Et~~~~l~~~~~~~~  142 (322)
T TIGR03550       122 S-MGLMLETTSERLCKGEAHYG  142 (322)
T ss_pred             C-CCcchhhhccccccccccCC
Confidence            4 57888888877666665544

This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.

>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]

Probab=94.80  E-value=0.072  Score=56.25  Aligned_cols=52  Identities=15%  Similarity=0.286  Sum_probs=41.6

Q ss_pred             eec-CCCCCC-ccHHHHHHHHHhc---CCcEEEEcCCCC--HHHHhhcCC--CceEEEEee
Q 038595          460 SLV-GEPIMY-PEINTLVDELHRR---RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVD  511 (534)
Q Consensus       460 Sl~-GEPlLy-p~L~elI~~lk~~---gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlD  511 (534)
                      |++ |||++- -+-.++|+.||+.   ++-+.|-|||.+  ++.++.|..  +|-+.+-.+
T Consensus        83 siTGGdPl~~ieR~~~~ir~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~  143 (353)
T COG2108          83 SITGGDPLLEIERTVEYIRLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPP  143 (353)
T ss_pred             cccCCChHHHHHHHHHHHHHHHHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCC
Confidence            445 999995 4778889999865   367999999998  688999985  788877764

>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme

Probab=94.56  E-value=0.21  Score=53.61  Aligned_cols=115  Identities=17%  Similarity=0.276  Sum_probs=70.5

Q ss_pred             cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccccccccccccCCC
Q 038595          355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYFGTVSSAIDKQIP  432 (534)
Q Consensus       355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~~~~~~~~~~~~~  432 (534)
                      +.-|+++|.||-.+...  |   ++...+|+.|++++..+++    +  |    +.+|+|.|  ++.||.          
T Consensus       145 srGCp~~CsfC~~~~~~--g---~~r~r~~e~I~~Ei~~l~~----~--g----~~ei~l~~~~~~~y~~----------  199 (414)
T TIGR01579       145 QDGCNFFCSYCIIPFAR--G---RSRSVPMEAILKQVKILVA----K--G----YKEIVLTGVNLGSYGD----------  199 (414)
T ss_pred             ccCcCCCCCCCceeeec--C---CCccCCHHHHHHHHHHHHH----C--C----CceEEEeeEccchhcc----------
Confidence            45699999999765432  2   2456899999999865432    1  3    56777754  222221          


Q ss_pred             CCCCCcccccccHHHhhhccCCceEEEeecCCCC-CCccHHHHHHHHHhc-CCc-EEEEc-CCC--CHHHHhhcCC----
Q 038595          433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPI-MYPEINTLVDELHRR-RIS-TFLVT-NAQ--FPDKIKLLKP----  502 (534)
Q Consensus       433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPl-Lyp~L~elI~~lk~~-gi~-~~LvT-NGt--lpe~l~~L~~----  502 (534)
                                                      -+ -...+.+|++.+++. |+. +.+.+ +..  -++.++.|..    
T Consensus       200 --------------------------------d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~  247 (414)
T TIGR01579       200 --------------------------------DLKNGTSLAKLLEQILQIPGIKRIRLSSIDPEDIDEELLEAIASEKRL  247 (414)
T ss_pred             --------------------------------CCCCCCcHHHHHHHHhcCCCCcEEEEeCCChhhCCHHHHHHHHhcCcc
Confidence                                            00 013566777777654 442 33321 111  1455555542    


Q ss_pred             CceEEEEeeCCCHHHHHhhcCCCC
Q 038595          503 VTQLYVSVDAATKDSLKAIDRPLF  526 (534)
Q Consensus       503 v~qlyvSlDA~~~e~y~~I~rP~~  526 (534)
                      ..++.+.|.+.+++.+++++|+..
T Consensus       248 ~~~l~lglESgs~~vLk~m~R~~~  271 (414)
T TIGR01579       248 CPHLHLSLQSGSDRVLKRMRRKYT  271 (414)
T ss_pred             CCCeEECCCcCChHHHHhcCCCCC
Confidence            467999999999999999999754

This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.

>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]

Probab=94.55  E-value=0.14  Score=56.26  Aligned_cols=117  Identities=21%  Similarity=0.340  Sum_probs=75.4

Q ss_pred             cccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCCCC
Q 038595          357 ACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDG  436 (534)
Q Consensus       357 ~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (534)
                      -|+++|.||--+.+.-.-     .-.+|++|+.++..+    +.+  |    |+||+|+     |.=             
T Consensus       153 GCn~~CtfCiiP~~RG~~-----rSr~~e~Il~ev~~L----v~~--G----~kEI~L~-----gqd-------------  199 (437)
T COG0621         153 GCNKFCTFCIIPYARGKE-----RSRPPEDILKEVKRL----VAQ--G----VKEIVLT-----GQD-------------  199 (437)
T ss_pred             CcCCCCCeeeeeccCCCc-----cCCCHHHHHHHHHHH----HHC--C----CeEEEEE-----EEe-------------
Confidence            599999999998765222     236899999998643    332  3    6788882     100             


Q ss_pred             CcccccccHHHhhhccCCceEEEeecCCCCC--CccHHHHHHHHHhc-CCc-EEEEcCCC---CHHHHhhcCC----Cce
Q 038595          437 EEKEGGVTLERLNEGLTPRHCALSLVGEPIM--YPEINTLVDELHRR-RIS-TFLVTNAQ---FPDKIKLLKP----VTQ  505 (534)
Q Consensus       437 ~~~~~~~~~~~~~ea~~~~h~alSl~GEPlL--yp~L~elI~~lk~~-gi~-~~LvTNGt---lpe~l~~L~~----v~q  505 (534)
                                            ++-.|--+=  .+.|.+|++.+.+. |+. +.+.|==-   ..+.++.+..    +..
T Consensus       200 ----------------------v~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~  257 (437)
T COG0621         200 ----------------------VNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPH  257 (437)
T ss_pred             ----------------------hhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCccccc
Confidence                                  011233332  47888888888885 433 55543211   1244443332    567


Q ss_pred             EEEEeeCCCHHHHHhhcCCCCCc
Q 038595          506 LYVSVDAATKDSLKAIDRPLFGD  528 (534)
Q Consensus       506 lyvSlDA~~~e~y~~I~rP~~~~  528 (534)
                      |.++|+..+.+.+++++|+...+
T Consensus       258 lHlPvQsGsd~ILk~M~R~yt~e  280 (437)
T COG0621         258 LHLPVQSGSDRILKRMKRGYTVE  280 (437)
T ss_pred             ccCccccCCHHHHHHhCCCcCHH
Confidence            89999999999999999987543

>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional

Probab=94.44  E-value=1.7  Score=42.23  Aligned_cols=150  Identities=13%  Similarity=0.089  Sum_probs=84.3

Q ss_pred             EEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccC----------cCCCCeEEEEeccCCCCCCchHHHHHHH
Q 038595           70 GKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPED----------LSKEALVLIVASSWEDGKPPEAAKFFMN  139 (534)
Q Consensus        70 VlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d----------L~~~~lvIfv~STYg~G~pPdna~~Fle  139 (534)
                      ++|+++.-......+-+.|.+.+... ..|++.||.+..++.          |...+.+||..|-|..+.|+ -.+.+++
T Consensus         2 iLvi~aHP~~~~S~~n~al~~~~~~~-~~v~v~dL~~~~p~~~~dv~~eq~~l~~aD~iV~~fP~~w~~~Pa-~lK~wiD   79 (176)
T PRK00871          2 ILIIYAHPYPHHSHANKRMLEQARTL-EGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPP-LLKLWID   79 (176)
T ss_pred             EEEEEcCCCCccChHHHHHHHHHHhc-CCeEEEEChhhcCCcchhHHHHHHHHHhCCEEEEEcChhhccccH-HHHHHHH
Confidence            68888888776555666666666543 368888887654321          34578999999999966554 4555554


Q ss_pred             HHHhhcCcccccccCCCCCeE-EEEEecCc--chH----HHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHH
Q 038595          140 WIDESANDFRVGSLLLSNCKF-AVFGVGSK--SYE----KTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFED  212 (534)
Q Consensus       140 ~L~e~~~DFRv~~~~Lkgl~y-AVFGLGDs--~Y~----e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~e  212 (534)
                      ..-....-|.-+...|+|+++ .|+..|..  .|.    ..|...-.-+...+.-+|.+.+-|........- .++++++
T Consensus        80 ~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~~~~~~~~~~-~~~~~~~  158 (176)
T PRK00871         80 KVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPPFAMHCTFIC-DDETLEG  158 (176)
T ss_pred             HHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcceEEEeeeccC-CHHHHHH
Confidence            433211112222245889866 45566665  232    122223444555666679887766543332211 1344555


Q ss_pred             HHHHHHHHHH
Q 038595          213 WSKRVVAILK  222 (534)
Q Consensus       213 W~~~L~~~L~  222 (534)
                      ..++..+.|.
T Consensus       159 ~~~~~~~~L~  168 (176)
T PRK00871        159 QARHYKQRLL  168 (176)
T ss_pred             HHHHHHHHHH
Confidence            4444444443

>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=94.38  E-value=0.19  Score=55.02  Aligned_cols=117  Identities=21%  Similarity=0.325  Sum_probs=67.3

Q ss_pred             cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccccccccccccCCC
Q 038595          355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYFGTVSSAIDKQIP  432 (534)
Q Consensus       355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~~~~~~~~~~~~~  432 (534)
                      +--|+++|.||--+...  | .  ....+|++|++++..+    ..+  |    |.+|+|+|  |..+|.          
T Consensus       161 srGC~~~CsFC~ip~~r--G-~--~rsr~~e~Iv~Ei~~l----~~~--G----~kei~l~~~~~~~y~~----------  215 (449)
T PRK14332        161 MRGCNNFCTFCVVPYTR--G-R--ERSRDPKSIVREIQDL----QEK--G----IRQVTLLGQNVNSYKE----------  215 (449)
T ss_pred             cCCcCCCCCCCCccccc--C-C--cccCCHHHHHHHHHHH----HHC--C----CeEEEEecccCCcccC----------
Confidence            44599999999776432  2 2  2457899999988543    221  3    67888863  333321          


Q ss_pred             CCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CC-cEEEEc-C--CCCHHHHhhcC--C--C
Q 038595          433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RI-STFLVT-N--AQFPDKIKLLK--P--V  503 (534)
Q Consensus       433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi-~~~LvT-N--Gtlpe~l~~L~--~--v  503 (534)
                                                      -  -..|.++++.+.+. |+ .+.+.+ |  ...++.++.+.  +  +
T Consensus       216 --------------------------------~--~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~  261 (449)
T PRK14332        216 --------------------------------Q--STDFAGLIQMLLDETTIERIRFTSPHPKDFPDHLLSLMAKNPRFC  261 (449)
T ss_pred             --------------------------------C--cccHHHHHHHHhcCCCcceEEEECCCcccCCHHHHHHHHhCCCcc
Confidence                                            0  01344455444332 32 133322 1  11133333332  2  4


Q ss_pred             ceEEEEeeCCCHHHHHhhcCCCCCchh
Q 038595          504 TQLYVSVDAATKDSLKAIDRPLFGDFW  530 (534)
Q Consensus       504 ~qlyvSlDA~~~e~y~~I~rP~~~~~w  530 (534)
                      ..+.+.+++.+.+.+++++|+...+-|
T Consensus       262 ~~l~lgvQSgsd~vLk~m~R~~t~~~~  288 (449)
T PRK14332        262 PNIHLPLQAGNTRVLEEMKRSYSKEEF  288 (449)
T ss_pred             ceEEECCCcCCHHHHHhhCCCCCHHHH
Confidence            689999999999999999998654333

>TIGR00510 lipA lipoate synthase

Probab=94.36  E-value=0.18  Score=52.72  Aligned_cols=55  Identities=4%  Similarity=0.038  Sum_probs=37.4

Q ss_pred             ccHHHHHHHHHhc--CCcEEEEcCCC--CHHHHhhcCC--CceEEEEeeCCCHHHHHhhcCC
Q 038595          469 PEINTLVDELHRR--RISTFLVTNAQ--FPDKIKLLKP--VTQLYVSVDAATKDSLKAIDRP  524 (534)
Q Consensus       469 p~L~elI~~lk~~--gi~~~LvTNGt--lpe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP  524 (534)
                      .++.++|+.+++.  ++.+.+.|.-.  ..+.++.|..  ++.+..-+.+. +..|+++++.
T Consensus       127 ~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv~~hnlEt~-~~l~~~vrr~  187 (302)
T TIGR00510       127 SHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDVYNHNLETV-ERLTPFVRPG  187 (302)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHHHcCchhhcccccch-HHHHHHhCCC
Confidence            4688899999875  56677666422  3556666654  56666666766 7789999874

The family shows strong sequence conservation.

>PLN02428 lipoic acid synthase

Probab=94.35  E-value=0.22  Score=53.15  Aligned_cols=151  Identities=18%  Similarity=0.234  Sum_probs=89.9

Q ss_pred             HHHHHhhhcCceEEecccceeeehhhhhhhcCCCccccceeeeccCCeeeeecccccccccccccccCCCCCCCCccccc
Q 038595          301 VIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWK  380 (534)
Q Consensus       301 ~~~~~l~~~gy~~~~~h~~vk~c~w~~~~~~~~~~cyk~~fygi~s~~c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~  380 (534)
                      .+++.|++.+-+-|-. +|         .--..|-||.+.=+|+..-.-|.+  +..|+.+|-||-..+...-  . +  
T Consensus        67 ~~~~~~~~~~l~tvc~-~a---------~cpn~~ec~~~~~~~~~taT~mil--g~gCtr~CrFCav~~~~~p--~-~--  129 (349)
T PLN02428         67 EIKEKLRELKLNTVCE-EA---------QCPNIGECWNGGGTGTATATIMIL--GDTCTRGCRFCAVKTSRTP--P-P--  129 (349)
T ss_pred             HHHHHHHHCCCceeec-CC---------CCCChHHhhCCCCCCCceEEEEEe--cCCCCCCCCCCcCCCCCCC--C-C--
Confidence            4567777777776642 11         223678899987777666666666  5689999999998654311  1 1  


Q ss_pred             CCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCCCCCcccccccHHHhhhccCCceEEEe
Q 038595          381 MDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALS  460 (534)
Q Consensus       381 ~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alS  460 (534)
                       .+|+++++.+..     +..+ |.    +.+||                                            .|
T Consensus       130 -~d~~Ep~~vA~~-----v~~~-Gl----k~vvl--------------------------------------------tS  154 (349)
T PLN02428        130 -PDPDEPENVAEA-----IASW-GV----DYVVL--------------------------------------------TS  154 (349)
T ss_pred             -CChhhHHHHHHH-----HHHc-CC----CEEEE--------------------------------------------EE
Confidence             234454443322     1111 22    12233                                            11


Q ss_pred             ecCC--C-CCCccHHHHHHHHHhcC--CcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCC
Q 038595          461 LVGE--P-IMYPEINTLVDELHRRR--ISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRP  524 (534)
Q Consensus       461 l~GE--P-lLyp~L~elI~~lk~~g--i~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP  524 (534)
                      +...  | .-..++.++|+.+++..  +.+.+.|=+.+  ++.++.|..  ++.+...+++ .++.|++|+.|
T Consensus       155 g~rddl~D~ga~~~~elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlET-v~rL~~~Ir~~  226 (349)
T PLN02428        155 VDRDDLPDGGSGHFAETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSGLDVFAHNIET-VERLQRIVRDP  226 (349)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcCCCEEccCccC-cHHHHHHhcCC
Confidence            1111  1 11348899999999863  44444433322  677777775  7888888886 56789999843

>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=94.28  E-value=0.2  Score=54.28  Aligned_cols=118  Identities=19%  Similarity=0.285  Sum_probs=69.6

Q ss_pred             cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccccccccccccCCC
Q 038595          355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYFGTVSSAIDKQIP  432 (534)
Q Consensus       355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~~~~~~~~~~~~~  432 (534)
                      +.-|+++|.||--+...  |..+   ..+|++|++++..+.    .+  |    |++|+|+|  ++.+|.-         
T Consensus       134 srGC~~~CsFC~ip~~r--G~~~---sr~~e~I~~Ei~~l~----~~--G----~keI~l~~~~~~~yg~d---------  189 (420)
T PRK14339        134 SIGCDKKCTYCIVPHTR--GKEI---SIPMDLILKEAEKAV----NN--G----AKEIFLLGQNVNNYGKR---------  189 (420)
T ss_pred             cCCCCCCCCcCCccccc--CCCC---CCCHHHHHHHHHHHH----HC--C----CcEEEEeeeccccccCC---------
Confidence            34699999999877533  3222   258999999886432    21  3    56788854  3333320         


Q ss_pred             CCCCCcccccccHHHhhhccCCceEEEeecC-CCCCCccHHHHHHHHHhc-CCc-EEEE-cCCC--CHHHHhhcCC----
Q 038595          433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVG-EPIMYPEINTLVDELHRR-RIS-TFLV-TNAQ--FPDKIKLLKP----  502 (534)
Q Consensus       433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~G-EPlLyp~L~elI~~lk~~-gi~-~~Lv-TNGt--lpe~l~~L~~----  502 (534)
                                                  +.+ .+.  ..|.+|++.+.+. |+. +.+. +|..  -++.++.+..    
T Consensus       190 ----------------------------~~~~~~~--~~l~~Ll~~l~~~~g~~~ir~~s~~p~~~~~ell~~~~~~~~~  239 (420)
T PRK14339        190 ----------------------------FSSEHEK--VDFSDLLDKLSEIEGLERIRFTSPHPLHMDDKFLEEFAKNPKI  239 (420)
T ss_pred             ----------------------------CcCCccc--ccHHHHHHHHhcCCCccEEEECCCChhhcCHHHHHHHHcCCCc
Confidence                                        000 000  1356666666553 542 3332 1211  1444554442    


Q ss_pred             CceEEEEeeCCCHHHHHhhcCCCC
Q 038595          503 VTQLYVSVDAATKDSLKAIDRPLF  526 (534)
Q Consensus       503 v~qlyvSlDA~~~e~y~~I~rP~~  526 (534)
                      ...+.+.+++.+.+.+++++|+..
T Consensus       240 ~~~l~iglQSgsd~vLk~M~R~~t  263 (420)
T PRK14339        240 CKSIHMPLQSGSSEILKAMKRGYT  263 (420)
T ss_pred             cCceEeCCccCCHHHHHhccCCCC
Confidence            468999999999999999999854

>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type

Probab=94.08  E-value=0.18  Score=54.62  Aligned_cols=115  Identities=18%  Similarity=0.290  Sum_probs=66.9

Q ss_pred             cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeee--ccccccccccccccCCC
Q 038595          355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLL--DFFYFGTVSSAIDKQIP  432 (534)
Q Consensus       355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~--~~~~~~~~~~~~~~~~~  432 (534)
                      +.-|+++|.||-.+...  | .  ....+|++|++++..+    ++.  |    +.+|+|+  |++.||.          
T Consensus       140 srGC~~~CsfC~ip~~~--G-~--~rsr~~e~Vl~Ei~~l----~~~--G----~~ei~l~g~d~~~yg~----------  194 (420)
T TIGR01578       140 NQGCLGNCSYCITKHAR--G-K--LASYPPEKIVEKARQL----VAE--G----CKEIWITSQDTGAYGR----------  194 (420)
T ss_pred             ccCCCCCCCCCccccCC--C-C--cccCCHHHHHHHHHHH----HHC--C----CeEEEEEeeccccccC----------
Confidence            44699999999886543  2 2  2346899999988653    221  3    4567774  3333321          


Q ss_pred             CCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-C-CcEEEEc-C-C----CCHHHHhhcC-C-
Q 038595          433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-R-ISTFLVT-N-A----QFPDKIKLLK-P-  502 (534)
Q Consensus       433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-g-i~~~LvT-N-G----tlpe~l~~L~-~-  502 (534)
                                                      +. ...+.+|++.+.+. + ..+.+.+ | .    ..++.++.+. + 
T Consensus       195 --------------------------------d~-~~~l~~Ll~~l~~i~~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~  241 (420)
T TIGR01578       195 --------------------------------DI-GSRLPELLRLITEIPGEFRLRVGMMNPKNVLEILDELANVYQHEK  241 (420)
T ss_pred             --------------------------------CC-CcCHHHHHHHHHhCCCCcEEEEcCCCCCcccccCHHHHHHHhccc
Confidence                                            10 12356666666553 2 2233221 1 1    1133333332 1 


Q ss_pred             -CceEEEEeeCCCHHHHHhhcCCCCC
Q 038595          503 -VTQLYVSVDAATKDSLKAIDRPLFG  527 (534)
Q Consensus       503 -v~qlyvSlDA~~~e~y~~I~rP~~~  527 (534)
                       ...+.+.+++.+.+.+++++|+...
T Consensus       242 ~~~~l~iglQSgsd~iL~~m~R~~~~  267 (420)
T TIGR01578       242 VYKFLHLPVQSGSDSVLKEMKREYTV  267 (420)
T ss_pred             ccCceEeCCccCCHHHHHhcCCCCCH
Confidence             3678999999999999999998543

This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.

>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=94.06  E-value=0.3  Score=52.94  Aligned_cols=116  Identities=20%  Similarity=0.334  Sum_probs=66.6

Q ss_pred             ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccccccccccccCCCC
Q 038595          356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYFGTVSSAIDKQIPS  433 (534)
Q Consensus       356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~  433 (534)
                      .-|+++|.||--+...  | .  +...+|++|++++..+    ..  .|    |.+|+|+|  +.-+|.-          
T Consensus       148 rGC~~~CsFC~ip~~~--G-~--~rsr~~e~Iv~Ei~~l----~~--~g----~kei~l~~~n~~~yg~~----------  202 (434)
T PRK14330        148 YGCNRFCTYCIVPYTR--G-R--EKSRPMEDILEEVEKL----AK--QG----YREVTFLGQNVDAYGKD----------  202 (434)
T ss_pred             cCCCCCCCCCceECcC--C-C--CccCCHHHHHHHHHHH----HH--CC----CcEEEEEEecccccccC----------
Confidence            4699999999875332  2 2  2468899999987543    22  13    45677754  2111210          


Q ss_pred             CCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CCc-EEEEc-C--CCCHHHHhhcCC----Cc
Q 038595          434 NDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RIS-TFLVT-N--AQFPDKIKLLKP----VT  504 (534)
Q Consensus       434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi~-~~LvT-N--Gtlpe~l~~L~~----v~  504 (534)
                                                 + +.   .+.|.+|++.+.+. |+. +.+.+ +  ...++.++.+..    +.
T Consensus       203 ---------------------------~-~~---~~~l~~Ll~~~~~~~~~~~~~~~~~~p~~~~~ell~~l~~~~~~~~  251 (434)
T PRK14330        203 ---------------------------L-KD---GSSLAKLLEEASKIEGIERIWFLTSYPTDFSDELIEVIANSPKVAK  251 (434)
T ss_pred             ---------------------------C-CC---CccHHHHHHHHHhcCCceEEEEecCChhhcCHHHHHHHhcCCcccC
Confidence                                       0 00   12456666655443 443 22221 1  112444444432    46


Q ss_pred             eEEEEeeCCCHHHHHhhcCCCCC
Q 038595          505 QLYVSVDAATKDSLKAIDRPLFG  527 (534)
Q Consensus       505 qlyvSlDA~~~e~y~~I~rP~~~  527 (534)
                      .+.+.+++.+.+.++.++|+...
T Consensus       252 ~l~iglQSgsd~vLk~M~R~~~~  274 (434)
T PRK14330        252 SIHLPVQSGSNRILKLMNRRYTR  274 (434)
T ss_pred             ceecCcCCCCHHHHHhcCCCCCH
Confidence            79999999999999999998643

>COG0431 Predicted flavoprotein [General function prediction only]

Probab=94.03  E-value=0.56  Score=45.18  Aligned_cols=114  Identities=18%  Similarity=0.201  Sum_probs=76.7

Q ss_pred             cEEEEEECccch--HHHHHHHHHHHHhhCCCc-eEEECCC----CCCcc--C-----------cCCCCeEEEEeccCCCC
Q 038595           69 KGKLFFISQTGT--SKTLAKRLHALLTSNDLL-FDLVDPQ----TYEPE--D-----------LSKEALVLIVASSWEDG  128 (534)
Q Consensus        69 kVlI~YgSqTGt--TE~lAe~La~~L~~~Gl~-v~V~dL~----d~d~~--d-----------L~~~~lvIfv~STYg~G  128 (534)
                      ++++++||..=.  +..+|+.+.+.|...+.. +..+++.    +.+.+  +           +...+.+||++|-|+ |
T Consensus         2 kil~i~GS~r~~S~~~~la~~~~~~l~~~~~~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~aD~li~~tPeYn-~   80 (184)
T COG0431           2 KILIISGSLRRGSFNRALAEAAAKLLPAGGEVEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAAADGLIIATPEYN-G   80 (184)
T ss_pred             eEEEEeccCcccchHHHHHHHHHHhhcccCceEEEecccccCCCCcchhhccCCHHHHHHHHHHHhCCEEEEECCccC-C
Confidence            589999997644  568899999999877633 3332321    11111  1           124689999999999 6


Q ss_pred             CCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595          129 KPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL  194 (534)
Q Consensus       129 ~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~  194 (534)
                      ..|.-.+..++||-.         ..+.++..++++.+-...  +.-.+...+...|..+|+..+-
T Consensus        81 s~pg~lKnaiD~l~~---------~~~~~Kpv~~~~~s~g~~--~~~~a~~~Lr~vl~~~~~~~~~  135 (184)
T COG0431          81 SYPGALKNAIDWLSR---------EALGGKPVLLLGTSGGGA--GGLRAQNQLRPVLSFLGARVIP  135 (184)
T ss_pred             CCCHHHHHHHHhCCH---------hHhCCCcEEEEecCCCch--hHHHHHHHHHHHHHhcCceecc
Confidence            677778889999854         268899888887653332  2234566677777778876553

>PRK05481 lipoyl synthase; Provisional

Probab=93.90  E-value=0.46  Score=49.15  Aligned_cols=122  Identities=12%  Similarity=0.078  Sum_probs=69.9

Q ss_pred             eeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccc
Q 038595          349 CMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAID  428 (534)
Q Consensus       349 c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~  428 (534)
                      .--+..+.-|+++|.||--+..++  .     .-+|++|++++.++.     . .|    +.+|+|+             
T Consensus        54 ~~fi~is~GC~~~C~FC~i~~~r~--~-----s~~~eeI~~ea~~l~-----~-~G----~kEI~L~-------------  103 (289)
T PRK05481         54 ATFMILGDICTRRCPFCDVATGRP--L-----PLDPDEPERVAEAVA-----R-MG----LKYVVIT-------------  103 (289)
T ss_pred             EEEEEecccccCCCCCceeCCCCC--C-----CCCHHHHHHHHHHHH-----H-CC----CCEEEEE-------------
Confidence            344447888999999998776552  1     267888988886431     1 13    3566661             


Q ss_pred             cCCCCCCCCcccccccHHHhhhccCCceEEEeec-CC-CCC-CccHHHHHHHHHhc--CCcEEEEcCC-C-CHHHHhhcC
Q 038595          429 KQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLV-GE-PIM-YPEINTLVDELHRR--RISTFLVTNA-Q-FPDKIKLLK  501 (534)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~-GE-PlL-yp~L~elI~~lk~~--gi~~~LvTNG-t-lpe~l~~L~  501 (534)
                                                     ++. +. |.. ...+.++++.+++.  ++.+.+.|-- . ..+.+..|.
T Consensus       104 -------------------------------gg~~~d~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~  152 (289)
T PRK05481        104 -------------------------------SVDRDDLPDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVL  152 (289)
T ss_pred             -------------------------------EeeCCCcccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHH
Confidence                                           000 00 111 13678888888874  5665555532 1 135555555


Q ss_pred             C--CceEEEEeeCCCHHHHHhhcCCCCCchhhh
Q 038595          502 P--VTQLYVSVDAATKDSLKAIDRPLFGDFWER  532 (534)
Q Consensus       502 ~--v~qlyvSlDA~~~e~y~~I~rP~~~~~w~~  532 (534)
                      .  ...+..-++ +.++.+++++|+...+.|-+
T Consensus       153 ~ag~~i~~~~~e-ts~~vlk~m~r~~t~e~~le  184 (289)
T PRK05481        153 DARPDVFNHNLE-TVPRLYKRVRPGADYERSLE  184 (289)
T ss_pred             hcCcceeecccc-ChHHHHHHhCCCCCHHHHHH
Confidence            3  233332233 35789999998655555543

>TIGR01212 radical SAM protein, TIGR01212 family

Probab=93.81  E-value=0.35  Score=50.17  Aligned_cols=65  Identities=11%  Similarity=0.088  Sum_probs=46.2

Q ss_pred             cCCCCCCc--cHHHHHHHHHhcC--CcEEEEcCCCC--HHHHh---hcCC--C-ceEEEEeeCCCHHHHHhhcCCCC
Q 038595          462 VGEPIMYP--EINTLVDELHRRR--ISTFLVTNAQF--PDKIK---LLKP--V-TQLYVSVDAATKDSLKAIDRPLF  526 (534)
Q Consensus       462 ~GEPlLyp--~L~elI~~lk~~g--i~~~LvTNGtl--pe~l~---~L~~--v-~qlyvSlDA~~~e~y~~I~rP~~  526 (534)
                      .|.|+..|  .|.++++.+++..  +.+.+.|+-..  ++.++   +|..  + ..+++-|++.+++++++|+|.+.
T Consensus        85 ggt~t~l~~~~L~~l~~~i~~~~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t  161 (302)
T TIGR01212        85 AYTNTYAPVEVLKEMYEQALSYDDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHD  161 (302)
T ss_pred             CCCcCCCCHHHHHHHHHHHhCCCCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcCh
Confidence            49999876  7999999998752  23445555442  34444   3433  4 46899999999999999999753

This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.

>PRK07360 FO synthase subunit 2; Reviewed

Probab=93.04  E-value=0.43  Score=50.94  Aligned_cols=112  Identities=13%  Similarity=0.202  Sum_probs=66.1

Q ss_pred             ecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCC
Q 038595          352 ATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQI  431 (534)
Q Consensus       352 ~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~  431 (534)
                      +..|..|+++|.||--...+.....+   .-++++|++.+.+.     ..+ |                           
T Consensus        64 i~~Tn~C~~~C~fC~~~~~~~~~~~y---~ls~eeI~~~a~~a-----~~~-G---------------------------  107 (371)
T PRK07360         64 INFTNICEGHCGFCAFRRDEGDHGAF---WLTIAEILEKAAEA-----VKR-G---------------------------  107 (371)
T ss_pred             cccchhhhcCCccCCcccCCCCCCCe---eCCHHHHHHHHHHH-----HhC-C---------------------------
Confidence            44588999999999976443211222   25888999887543     221 3                           


Q ss_pred             CCCCCCcccccccHHHhhhccCCceEEEeecC-CCCCC--ccHHHHHHHHHhc--CCcEEEE----------cCCCC-HH
Q 038595          432 PSNDGEEKEGGVTLERLNEGLTPRHCALSLVG-EPIMY--PEINTLVDELHRR--RISTFLV----------TNAQF-PD  495 (534)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~G-EPlLy--p~L~elI~~lk~~--gi~~~Lv----------TNGtl-pe  495 (534)
                                            .+.+.|. .| .|.+.  .++.++++.+|+.  ++.+...          +.|.. .+
T Consensus       108 ----------------------~~~i~l~-~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e  164 (371)
T PRK07360        108 ----------------------ATEVCIQ-GGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEE  164 (371)
T ss_pred             ----------------------CCEEEEc-cCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHH
Confidence                                  2344455 35 56664  3688889999874  3444433          45766 46


Q ss_pred             HHhhcCC--CceEE-EEeeCCCHHHHHhhc
Q 038595          496 KIKLLKP--VTQLY-VSVDAATKDSLKAID  522 (534)
Q Consensus       496 ~l~~L~~--v~qly-vSlDA~~~e~y~~I~  522 (534)
                      .+++|..  ++.+. -+-...+++.+++++
T Consensus       165 ~l~~LkeAGld~~~~t~~e~l~~~vr~~i~  194 (371)
T PRK07360        165 VLKALKDAGLDSMPGTAAEILVDEVRRIIC  194 (371)
T ss_pred             HHHHHHHcCCCcCCCcchhhccHHHHHhhC
Confidence            6788875  66664 122233455555555

>PRK12928 lipoyl synthase; Provisional

Probab=92.95  E-value=0.37  Score=50.02  Aligned_cols=62  Identities=8%  Similarity=-0.004  Sum_probs=34.2

Q ss_pred             ccHHHHHHHHHhc--CCcEEEEcCCC---CHHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCCCchhh
Q 038595          469 PEINTLVDELHRR--RISTFLVTNAQ---FPDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLFGDFWE  531 (534)
Q Consensus       469 p~L~elI~~lk~~--gi~~~LvTNGt---lpe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~~~~w~  531 (534)
                      .++.++|+.+++.  ++.+.+.|=.-   ..+.++.|..  .+.+..=+.. .++.|++|++....+-|-
T Consensus       123 ~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlEt-~~~vl~~m~r~~t~e~~l  191 (290)
T PRK12928        123 AHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAKPDVFNHNLET-VPRLQKAVRRGADYQRSL  191 (290)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcCchhhcccCcC-cHHHHHHhCCCCCHHHHH
Confidence            3677888888876  35555554322   2455555543  2222211333 378899999865444443

>COG1032 Fe-S oxidoreductase [Energy production and conversion]

Probab=92.93  E-value=0.34  Score=51.53  Aligned_cols=118  Identities=18%  Similarity=0.299  Sum_probs=67.8

Q ss_pred             cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCC
Q 038595          355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSN  434 (534)
Q Consensus       355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (534)
                      +.-|+.+|.||.-....      .....+|+.+++++..+.++.++...-.-+        |.|.               
T Consensus       205 ~RGCp~~C~FC~~~~~~------~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~--------~~f~---------------  255 (490)
T COG1032         205 SRGCPRGCRFCSITKHF------KYRRRRPERVVEEIKELIEEGGKRVVFFVD--------DIFL---------------  255 (490)
T ss_pred             ccCCCCCCCCCCCcccc------cccCCCHHHHHHHHHHHHHHhhhcCccccc--------ceee---------------
Confidence            44699999999986432      223467778888888877776665432111        1111               


Q ss_pred             CCCcccccccHHHhhhccCCceEEEeecCC-CCCCccHHHHHHHHHhcCCc----EEEEcCCCCH-----HHHh-hcCC-
Q 038595          435 DGEEKEGGVTLERLNEGLTPRHCALSLVGE-PIMYPEINTLVDELHRRRIS----TFLVTNAQFP-----DKIK-LLKP-  502 (534)
Q Consensus       435 ~~~~~~~~~~~~~~~ea~~~~h~alSl~GE-PlLyp~L~elI~~lk~~gi~----~~LvTNGtlp-----e~l~-~L~~-  502 (534)
                                                ..+. +..++.+..+...+.+.+..    +....-...+     +.+. .+.. 
T Consensus       256 --------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~  309 (490)
T COG1032         256 --------------------------YGSPALNDEKRFELLSLELIERGLRKGCRVHISAPSLRADTVTDEELLKLLREA  309 (490)
T ss_pred             --------------------------cCCccccchhhcccchHHHHHHhcccCceeeeeccccCchhcCHHHHHHHHhhC
Confidence                                      1111 34455555555555555442    2222221211     2222 2222 


Q ss_pred             -CceEEEEeeCCCHHHHHhhcCCCCC
Q 038595          503 -VTQLYVSVDAATKDSLKAIDRPLFG  527 (534)
Q Consensus       503 -v~qlyvSlDA~~~e~y~~I~rP~~~  527 (534)
                       ...+++-+.+.+.+..+.+.+++..
T Consensus       310 g~~~~~iG~Esgs~~~l~~~~k~~~~  335 (490)
T COG1032         310 GLRRVYIGIESGSEELLKKINKGITT  335 (490)
T ss_pred             CCcceEEeccCCCHHHHHHHhCCCCh
Confidence             5779999999999999999988643

>PRK05926 hypothetical protein; Provisional

Probab=92.64  E-value=0.21  Score=53.61  Aligned_cols=112  Identities=13%  Similarity=0.144  Sum_probs=70.2

Q ss_pred             eecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccC
Q 038595          351 EATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQ  430 (534)
Q Consensus       351 ~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~  430 (534)
                      .+.+|+.|.++|.||--+..+....   ...-+|++|++.+.+.      . .|.                         
T Consensus        71 nin~Tn~C~~dC~FCaf~~~~~~~~---~~~ls~eeI~~~a~~a------~-~G~-------------------------  115 (370)
T PRK05926         71 YLYPTNFCQFNCTFCSFYAKPGDPK---GWFYTPDQLVQSIKEN------P-SPI-------------------------  115 (370)
T ss_pred             eeecCCCCCCCCCccccccCCCCcc---cccCCHHHHHHHHHHH------h-cCC-------------------------
Confidence            3457899999999999665543322   2357899999988642      1 232                         


Q ss_pred             CCCCCCCcccccccHHHhhhccCCceEEEeecCCC-CC-CccHHHHHHHHHhc--CCcEEEEc-----------CCCCHH
Q 038595          431 IPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEP-IM-YPEINTLVDELHRR--RISTFLVT-----------NAQFPD  495 (534)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEP-lL-yp~L~elI~~lk~~--gi~~~LvT-----------NGtlpe  495 (534)
                                              +.+.|.. |+. -+ +.++.++++.+|+.  ++.+.-.|           +-+..+
T Consensus       116 ------------------------~ei~iv~-G~~p~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e  170 (370)
T PRK05926        116 ------------------------TETHIVA-GCFPSCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKE  170 (370)
T ss_pred             ------------------------CEEEEEe-CcCCCCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHH
Confidence                                    2223332 443 22 24677888888876  45544333           223467


Q ss_pred             HHhhcCC--CceEEE-EeeCCCHHHHHhhc
Q 038595          496 KIKLLKP--VTQLYV-SVDAATKDSLKAID  522 (534)
Q Consensus       496 ~l~~L~~--v~qlyv-SlDA~~~e~y~~I~  522 (534)
                      ++++|..  ++.+.- ..+..+++.+++++
T Consensus       171 ~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~  200 (370)
T PRK05926        171 VLQTLKIAGLDSIPGGGAEILVDEIRETLA  200 (370)
T ss_pred             HHHHHHHcCcCccCCCCchhcCHHHHHhhC
Confidence            7888876  666654 47777888888777

>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=92.51  E-value=0.36  Score=52.72  Aligned_cols=123  Identities=20%  Similarity=0.324  Sum_probs=71.0

Q ss_pred             cccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeecc--ccccccccccccCCCCC
Q 038595          357 ACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDF--FYFGTVSSAIDKQIPSN  434 (534)
Q Consensus       357 ~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  434 (534)
                      -|+++|.||--+...  |.   ....+|++|++++..+    +.  +|    |.+|+|+|-  -.+|.            
T Consensus       157 GC~~~CsFC~ip~~r--G~---~rsr~~e~V~~Ei~~l----~~--~g----~kei~l~~~~~~~yg~------------  209 (448)
T PRK14333        157 GCNERCTYCVVPSVR--GK---EQSRTPEAIRAEIEEL----AA--QG----YKEITLLGQNIDAYGR------------  209 (448)
T ss_pred             CCCCCCCCCceeccc--CC---CcccCHHHHHHHHHHH----HH--CC----CcEEEEEecccchhcC------------
Confidence            699999999775432  21   1235788999887533    22  23    456777541  00010            


Q ss_pred             CCCcccccccHHHhhhccCCceEEEeecCCCCC--CccHHHHHHHHHhc-CCc-EEEE-cCCC-C-HHHHhhcCC----C
Q 038595          435 DGEEKEGGVTLERLNEGLTPRHCALSLVGEPIM--YPEINTLVDELHRR-RIS-TFLV-TNAQ-F-PDKIKLLKP----V  503 (534)
Q Consensus       435 ~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlL--yp~L~elI~~lk~~-gi~-~~Lv-TNGt-l-pe~l~~L~~----v  503 (534)
                                          +   + ..+.|..  ...|.++++.+++. |+. +.+. .|-. + ++.++.+..    +
T Consensus       210 --------------------d---~-~~~~p~~~~~~~l~~Ll~~i~~~~~~~rir~~~~~p~~~~~eli~~~~~~~~~~  265 (448)
T PRK14333        210 --------------------D---L-PGTTPEGRHQHTLTDLLYYIHDVEGIERIRFATSHPRYFTERLIKACAELPKVC  265 (448)
T ss_pred             --------------------C---C-CCccccccccccHHHHHHHHHhcCCCeEEEECCCChhhhhHHHHHHHhcCCccc
Confidence                                0   0 0133433  23678888888774 543 3331 1211 1 344444432    5


Q ss_pred             ceEEEEeeCCCHHHHHhhcCCCCCchh
Q 038595          504 TQLYVSVDAATKDSLKAIDRPLFGDFW  530 (534)
Q Consensus       504 ~qlyvSlDA~~~e~y~~I~rP~~~~~w  530 (534)
                      ..+.+.+++.+.+.++.++|....+-+
T Consensus       266 ~~l~igiQSgsd~vLk~m~R~~t~e~~  292 (448)
T PRK14333        266 EHFHIPFQSGDNEILKAMARGYTHEKY  292 (448)
T ss_pred             ccccCCCccCCHHHHHhcCCCCCHHHH
Confidence            778999999999999999998654433

>PRK00955 hypothetical protein; Provisional

Probab=92.49  E-value=0.41  Score=54.71  Aligned_cols=57  Identities=19%  Similarity=0.261  Sum_probs=40.0

Q ss_pred             ccHHHHHHHHHhc-CCc-EEEEcCC------CC---HHHHhhcCC--C-ceEEEEeeCCCHHHHHhhcCCCC
Q 038595          469 PEINTLVDELHRR-RIS-TFLVTNA------QF---PDKIKLLKP--V-TQLYVSVDAATKDSLKAIDRPLF  526 (534)
Q Consensus       469 p~L~elI~~lk~~-gi~-~~LvTNG------tl---pe~l~~L~~--v-~qlyvSlDA~~~e~y~~I~rP~~  526 (534)
                      ..+.+|++.+++. |++ ++ ++.|      ..   .+.+++|..  + -+|.|.+...+.+.++.++||..
T Consensus       387 ~~l~~LLr~l~~l~gvkrv~-isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk~M~K~~~  457 (620)
T PRK00955        387 KEYLELLRKVRKLPGVKKVF-IRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLKLMGKPSR  457 (620)
T ss_pred             HHHHHHHHHHhccCCceEEE-eecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHHHhCCCCH
Confidence            4678888888875 664 44 4443      11   235666654  2 48999999999999999999953

>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]

Probab=92.26  E-value=0.93  Score=44.23  Aligned_cols=124  Identities=15%  Similarity=0.057  Sum_probs=82.2

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCC---------------------CCccCcCCCCeEEEEeccCCC
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQT---------------------YEPEDLSKEALVLIVASSWED  127 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d---------------------~d~~dL~~~~lvIfv~STYg~  127 (534)
                      +|.|+|-|.+|.-..+|+...+.+...|-++++..+.+                     +.++.|.+++.++|+.||-- 
T Consensus         3 kv~iv~ys~yghv~~lAe~~kkGie~a~geA~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~PTRf-   81 (203)
T KOG3135|consen    3 KVAIVIYSTYGHVAKLAEAEKKGIESAGGEATIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFPTRF-   81 (203)
T ss_pred             eEEEEEEEcccHHHHHHHHHHhhhhccCCeeEEEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeecccccc-
Confidence            58999999999999999999999887655666555533                     22333556889999999987 


Q ss_pred             CCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEee
Q 038595          128 GKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGD  200 (534)
Q Consensus       128 G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD  200 (534)
                      |.+|..++.||+.--.+   ++  +..|.|+..++|=++-+.-+ .--..+...-..|.-.| -.++|+|.-+
T Consensus        82 G~~~AQ~kaF~D~TggL---W~--~~aL~GK~AG~F~Stgs~gG-gqE~talta~t~LvHHG-mifVPlGYkn  147 (203)
T KOG3135|consen   82 GNMPAQWKAFWDSTGGL---WA--KGALAGKPAGIFVSTGSQGG-GQETTALTAITQLVHHG-MIFVPLGYKN  147 (203)
T ss_pred             cCcHHHHHHHHhccCch---hh--hccccCCceeEEEeccCCCC-chHhHHHHHHHHHHhcc-eEEEecccch
Confidence            89999888998752211   11  45789999999966544332 11112223233344445 3455777643

>TIGR01211 ELP3 histone acetyltransferase, ELP3 family

Probab=92.24  E-value=0.67  Score=52.05  Aligned_cols=43  Identities=16%  Similarity=0.210  Sum_probs=33.8

Q ss_pred             cEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCC
Q 038595          484 STFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLF  526 (534)
Q Consensus       484 ~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~  526 (534)
                      .+.+.||-..  ++.++.|..  ++.+.+-|+..+.+.++.|+|.+.
T Consensus       194 gitiEtRPD~i~~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRght  240 (522)
T TIGR01211       194 GLTIETRPDYCREEHIDRMLKLGATRVELGVQTIYNDILERTKRGHT  240 (522)
T ss_pred             EEEEEEcCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHhCCCCC
Confidence            3445666543  677777775  899999999999999999999763

The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.

>TIGR01210 conserved hypothetical protein TIGR01210

Probab=91.63  E-value=2.5  Score=44.20  Aligned_cols=63  Identities=16%  Similarity=0.336  Sum_probs=46.2

Q ss_pred             CCCCCc--cHHHHHHHHHhcC-C-cEEEEcCCCC--HHHHhhcCC--Cc-eEEEEeeCCCHHHHH-hhcCCCC
Q 038595          464 EPIMYP--EINTLVDELHRRR-I-STFLVTNAQF--PDKIKLLKP--VT-QLYVSVDAATKDSLK-AIDRPLF  526 (534)
Q Consensus       464 EPlLyp--~L~elI~~lk~~g-i-~~~LvTNGtl--pe~l~~L~~--v~-qlyvSlDA~~~e~y~-~I~rP~~  526 (534)
                      .|...|  .+.++++.+++.+ + .+.+.|+...  ++.++.|..  +. .|++-+++.+.+..+ .|++++.
T Consensus        81 D~~~~~~~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t  153 (313)
T TIGR01210        81 DDREVPKETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGST  153 (313)
T ss_pred             CcCcCCHHHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCC
Confidence            555554  6778888888765 3 3566666643  677777765  65 799999999999995 7998863

This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.

>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]

Probab=91.23  E-value=0.63  Score=50.66  Aligned_cols=68  Identities=13%  Similarity=0.223  Sum_probs=55.9

Q ss_pred             eEEEeecCCCCCCccHHHHHHHHHhcC----Cc-EEEEcCCC-CHHHHhhcCC--CceEEEEeeCCCHHHHHhhcC
Q 038595          456 HCALSLVGEPIMYPEINTLVDELHRRR----IS-TFLVTNAQ-FPDKIKLLKP--VTQLYVSVDAATKDSLKAIDR  523 (534)
Q Consensus       456 h~alSl~GEPlLyp~L~elI~~lk~~g----i~-~~LvTNGt-lpe~l~~L~~--v~qlyvSlDA~~~e~y~~I~r  523 (534)
                      -+..|..|.+.-||++.+.++.+...+    +. +|+-.||- +++..+.|..  |+.||+||-+.||+.=++..|
T Consensus        81 ~~~~~~~~d~~c~p~le~~~~r~~~~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~  156 (414)
T COG1625          81 GAKQCGNGDTFCYPDLEPRGRRARLYYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMK  156 (414)
T ss_pred             ceeecCCCCcccCcchhhhhhHHHhhcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhc
Confidence            456677899999999999999999987    32 67778875 4777777775  999999999999998776654

>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=90.99  E-value=1.3  Score=48.66  Aligned_cols=25  Identities=16%  Similarity=0.250  Sum_probs=21.7

Q ss_pred             CceEEEEeeCCCHHHHHhhcCCCCC
Q 038595          503 VTQLYVSVDAATKDSLKAIDRPLFG  527 (534)
Q Consensus       503 v~qlyvSlDA~~~e~y~~I~rP~~~  527 (534)
                      +..+.+.+.+.+.+.++.++|+...
T Consensus       268 c~~l~iglQSgsd~vLk~m~R~~t~  292 (455)
T PRK14335        268 CRLVHLPVQHGSNGVLKRMNRSYTR  292 (455)
T ss_pred             CCeEEEccCcCCHHHHHHcCCCCCH
Confidence            6889999999999999999997543

>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]

Probab=90.06  E-value=2.3  Score=44.60  Aligned_cols=68  Identities=19%  Similarity=0.207  Sum_probs=49.5

Q ss_pred             CceEEEeecCCCCCCcc-----HHHHHHHHHhcCCcEEEEcCCCC----HHHHhhcCC--CceEEEEeeCCCHHHHHhh
Q 038595          454 PRHCALSLVGEPIMYPE-----INTLVDELHRRRISTFLVTNAQF----PDKIKLLKP--VTQLYVSVDAATKDSLKAI  521 (534)
Q Consensus       454 ~~h~alSl~GEPlLyp~-----L~elI~~lk~~gi~~~LvTNGtl----pe~l~~L~~--v~qlyvSlDA~~~e~y~~I  521 (534)
                      +.++++|-+-+|..-.+     ...+++.+.+.|.++.++|=+.+    -+.+.++.+  ...+.|||...+.+.-+.+
T Consensus        83 ~~~i~is~~TDpyqp~E~~~~ltR~ilei~~~~~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~  161 (297)
T COG1533          83 RTVIAISSVTDPYQPIEKEYRLTRKILEILLKYGFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKIL  161 (297)
T ss_pred             ceEEEEecCCCCCCcchHHHHHHHHHHHHHHHcCCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhc
Confidence            45788888888888632     33455666677999999999996    466666655  4779999999887754443

>COG2516 Biotin synthase-related enzyme [General function prediction only]

Probab=90.04  E-value=0.32  Score=51.36  Aligned_cols=78  Identities=17%  Similarity=0.304  Sum_probs=55.2

Q ss_pred             ceEEEeecCCCCCCccHHHHHHHHH-hcCCcEEEE---cCCCCHHHHhhcC--CCceEEEEeeCCCHHHHHhhcCCCC-C
Q 038595          455 RHCALSLVGEPIMYPEINTLVDELH-RRRISTFLV---TNAQFPDKIKLLK--PVTQLYVSVDAATKDSLKAIDRPLF-G  527 (534)
Q Consensus       455 ~h~alSl~GEPlLyp~L~elI~~lk-~~gi~~~Lv---TNGtlpe~l~~L~--~v~qlyvSlDA~~~e~y~~I~rP~~-~  527 (534)
                      +.+.|+..-+|=.-+++...++.+| ..|..++|-   |--.+-+.+.+-.  +.+.+.|-+||++++.|++|.++-. .
T Consensus        88 ~rici~~i~~p~~~~d~~~i~~~~~~~~~~~itiseci~~~~~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~  167 (339)
T COG2516          88 KRICIQQIAYPRALNDLKLILERLHIRLGDPITISECITAVSLKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSP  167 (339)
T ss_pred             ccccceeeccccccchhhhhhhhhhhccCCceehhhhhhcccchHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCC
Confidence            3456677788999999999999999 678776653   3333333333222  3688999999999999999976643 2


Q ss_pred             chhhh
Q 038595          528 DFWER  532 (534)
Q Consensus       528 ~~w~~  532 (534)
                      ..|||
T Consensus       168 ~S~e~  172 (339)
T COG2516         168 HSWER  172 (339)
T ss_pred             CcHHH
Confidence            45555

>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]

Probab=90.00  E-value=2.7  Score=45.86  Aligned_cols=65  Identities=23%  Similarity=0.342  Sum_probs=52.9

Q ss_pred             cCCCCCCc--cHHHHHHHHHhc-C-----CcEEEEcCCC-C-HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCC
Q 038595          462 VGEPIMYP--EINTLVDELHRR-R-----ISTFLVTNAQ-F-PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLF  526 (534)
Q Consensus       462 ~GEPlLyp--~L~elI~~lk~~-g-----i~~~LvTNGt-l-pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~  526 (534)
                      .|.|++-.  .|..++..+++. +     .-+.+..|=. + .+.++.+..  +.++.+=|.+-|.+..+++.|.+.
T Consensus        95 GGTPslL~~~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~  171 (416)
T COG0635          95 GGTPSLLSPEQLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHD  171 (416)
T ss_pred             CCccccCCHHHHHHHHHHHHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCC
Confidence            49999953  789999999865 2     4477888844 4 778887775  899999999999999999999764

>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]

Probab=89.00  E-value=8.3  Score=37.85  Aligned_cols=152  Identities=16%  Similarity=0.119  Sum_probs=89.5

Q ss_pred             cEEEEEECcc-chHHHHHHHHHHHHhhCCCceEEECCC-----------C--CCcc------CcCCCCeEEEEeccCCCC
Q 038595           69 KGKLFFISQT-GTSKTLAKRLHALLTSNDLLFDLVDPQ-----------T--YEPE------DLSKEALVLIVASSWEDG  128 (534)
Q Consensus        69 kVlI~YgSqT-GtTE~lAe~La~~L~~~Gl~v~V~dL~-----------d--~d~~------dL~~~~lvIfv~STYg~G  128 (534)
                      +++|+|+--- .-+..+++...+.+.+.|+++...|+.           |  +.++      .+...+.+||+-|-|-.|
T Consensus         2 kiLii~aHP~~sf~~~~~~~~~~~~n~~~~~v~~~dl~~~~fd~~~~~~d~~~~~Dv~~E~e~l~~AD~ivlqfPlwW~~   81 (189)
T COG2249           2 KILIIYAHPNESFTHALSDAALERLNEAGHEVALKDLYALGFDPYLTYPDGEFPIDVKAEQEKLLWADVIVLQFPLWWYS   81 (189)
T ss_pred             cEEEEEeCchhhhhHHHHHHHHHHHHHcchHHHhhhhhhhcCCceeecCccCCCCCHHHHHHHHHhcceEEEEcCchhcc
Confidence            4899999885 444455555556666666554443332           1  1110      134568999999999977


Q ss_pred             CCchHHHHHHHHHHhhcCcccccc----cCCCCCeEEEEE-ecCcchHHHHHHHHH---------HHHHHHHHcCCceec
Q 038595          129 KPPEAAKFFMNWIDESANDFRVGS----LLLSNCKFAVFG-VGSKSYEKTFNMVAK---------DLSKKMRELGAGEVL  194 (534)
Q Consensus       129 ~pPdna~~Fle~L~e~~~DFRv~~----~~Lkgl~yAVFG-LGDs~Y~e~Fc~aAK---------~LDk~L~kLGA~rV~  194 (534)
                      .|+ -.+.+++..-..--.+..+.    ..|+|+++-++. .|...  +.|...+.         .+.-.+..+|...+-
T Consensus        82 ~Pa-iLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~~--~~y~~~g~~~~~~~~~~~~~~~~~~~g~~~~~  158 (189)
T COG2249          82 MPA-LLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAPE--EAYREGGGNFFEGVLLDPLYGTFHYCGLGWLP  158 (189)
T ss_pred             CcH-HHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCCH--HHHhhcccCcccccccchhHHHHHHcCCcccc
Confidence            664 45555554432221122222    679999887765 44432  12322222         233456667877776


Q ss_pred             ceEEeeCCCCCcHHHHHHHHHHHHHHHHhc
Q 038595          195 PVVEGDVDGGELDVVFEDWSKRVVAILKSG  224 (534)
Q Consensus       195 plg~gD~~~g~~e~~f~eW~~~L~~~L~~~  224 (534)
                      +....+...- .++....|.+++...|...
T Consensus       159 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~  187 (189)
T COG2249         159 PFTFYGADVI-DDETRAAYLERYRAHLKEI  187 (189)
T ss_pred             ceeEeecccC-CHHHHHHHHHHHHHHHHhh
Confidence            6666665542 3678999999988887653

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253

Probab=87.34  E-value=1  Score=43.08  Aligned_cols=60  Identities=13%  Similarity=0.134  Sum_probs=42.8

Q ss_pred             CCCCccHHHHHHHHHhcCCcEEEEcCCCCHHH---HhhcC--C-CceEEEEeeC----CCHHHHHhhcCC
Q 038595          465 PIMYPEINTLVDELHRRRISTFLVTNAQFPDK---IKLLK--P-VTQLYVSVDA----ATKDSLKAIDRP  524 (534)
Q Consensus       465 PlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~---l~~L~--~-v~qlyvSlDA----~~~e~y~~I~rP  524 (534)
                      ..++|.+.++++.|++.|+++.++||+.....   ++.+-  . .+.++.+=|.    |+++.|..+.+-
T Consensus        93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~  162 (221)
T TIGR02253        93 LRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKR  162 (221)
T ss_pred             CCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHH
Confidence            45799999999999999999999999975432   33221  1 4555555443    677888777654

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).

>PRK05927 hypothetical protein; Provisional

Probab=86.15  E-value=1.3  Score=47.23  Aligned_cols=38  Identities=13%  Similarity=0.120  Sum_probs=26.4

Q ss_pred             cccccccccccccccCCCCCCCCcccccCCChHHHHHHHHH
Q 038595          353 TPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAID  393 (534)
Q Consensus       353 ~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~  393 (534)
                      ..|..|+++|.||-....+.....   ..-++++|++.+.+
T Consensus        50 ~~Tn~C~~~C~fCaf~~~~~~~~~---y~ls~eei~~~a~~   87 (350)
T PRK05927         50 NYTNICKIDCTFCAFYRKPHSSDA---YLLSFDEFRSLMQR   87 (350)
T ss_pred             ccchhhhcCCccCCccCCCCCccc---cccCHHHHHHHHHH
Confidence            448889999999998754322122   24588899888754

>PRK06769 hypothetical protein; Validated

Probab=85.76  E-value=1.4  Score=41.74  Aligned_cols=61  Identities=20%  Similarity=0.292  Sum_probs=42.6

Q ss_pred             CCCCCCccHHHHHHHHHhcCCcEEEEcCCCC--------HHHHhhcC--CCceEEEEee---------CCCHHHHHhhcC
Q 038595          463 GEPIMYPEINTLVDELHRRRISTFLVTNAQF--------PDKIKLLK--PVTQLYVSVD---------AATKDSLKAIDR  523 (534)
Q Consensus       463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGtl--------pe~l~~L~--~v~qlyvSlD---------A~~~e~y~~I~r  523 (534)
                      +...+||...++++.||++|++++++||...        ......|.  .++..+++..         -|+++.|.++.+
T Consensus        25 ~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~  104 (173)
T PRK06769         25 GSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAE  104 (173)
T ss_pred             HHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHH
Confidence            4455799999999999999999999999863        11222222  2566666543         567777777654

>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase

Probab=85.66  E-value=1.5  Score=41.89  Aligned_cols=60  Identities=12%  Similarity=0.090  Sum_probs=43.1

Q ss_pred             CCCCCccHHHHHHHHHhcCCcEEEEcCCCCHH--HHhh-----cCC-CceEEEEee----CCCHHHHHhhcC
Q 038595          464 EPIMYPEINTLVDELHRRRISTFLVTNAQFPD--KIKL-----LKP-VTQLYVSVD----AATKDSLKAIDR  523 (534)
Q Consensus       464 EPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe--~l~~-----L~~-v~qlyvSlD----A~~~e~y~~I~r  523 (534)
                      ..-+||.+.++++.||++|+++.++||+....  ....     +.. .+.++.|-+    -|+++.|..+.+
T Consensus        92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~  163 (211)
T TIGR02247        92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLE  163 (211)
T ss_pred             ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHH
Confidence            45578999999999999999999999987432  2211     222 566777754    477888877654

These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.

>PRK09234 fbiC FO synthase; Reviewed

Probab=85.30  E-value=1.1  Score=52.95  Aligned_cols=126  Identities=14%  Similarity=0.140  Sum_probs=68.6

Q ss_pred             eecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccC
Q 038595          351 EATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQ  430 (534)
Q Consensus       351 ~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~  430 (534)
                      -+..|+.|.++|.||--...+...   ...+-+|++|++.+.+..+.      |.    .+++|                
T Consensus        74 ~In~Tn~C~~~C~YCaF~~~~~~~---~~~~ls~eEIl~~a~~~~~~------G~----~e~l~----------------  124 (843)
T PRK09234         74 FIPLTRLCRDRCHYCTFATVPGKL---EAAYLSPDEVLDIARAGAAA------GC----KEALF----------------  124 (843)
T ss_pred             EecCCCCCCCCCCcCCCccCCCCC---ccccCCHHHHHHHHHHHHHC------CC----CEEEE----------------
Confidence            345699999999999876443211   23456899999988654221      21    22332                


Q ss_pred             CCCCCCCcccccccHH-HhhhccCCceEEEeecCCCCCCccHHHHHHHHHh-cCCcEEEEcCCCC-HHHHhhcCC--Cce
Q 038595          431 IPSNDGEEKEGGVTLE-RLNEGLTPRHCALSLVGEPIMYPEINTLVDELHR-RRISTFLVTNAQF-PDKIKLLKP--VTQ  505 (534)
Q Consensus       431 ~~~~~~~~~~~~~~~~-~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~-~gi~~~LvTNGtl-pe~l~~L~~--v~q  505 (534)
                               .+|..++ ++.++    +-.|...|=.....++.++++.+|+ .|+...+.- |.+ ++.++.|.+  ++ 
T Consensus       125 ---------t~G~~P~~~~~~~----~~~l~~~gy~~~~ey~~~~~~~ik~~~gl~p~i~~-G~ls~~E~~~Lk~~g~s-  189 (843)
T PRK09234        125 ---------TLGDRPEDRWPEA----REWLDERGYDSTLDYVRAMAIRVLEETGLLPHLNP-GVMSWSELARLKPVAPS-  189 (843)
T ss_pred             ---------ecCCCCccccccc----cccccccccccHHHHHHHHHHHHHHhcCCCceeee-CCCCHHHHHHHHHhcCc-
Confidence                     1222222 11110    0112333433333678888998886 465443322 444 788888876  33 


Q ss_pred             EEEEeeCCCHHHHHh
Q 038595          506 LYVSVDAATKDSLKA  520 (534)
Q Consensus       506 lyvSlDA~~~e~y~~  520 (534)
                      ..+++...++..|+.
T Consensus       190 ~gl~lEt~~~~l~~~  204 (843)
T PRK09234        190 MGMMLETTSRRLFEE  204 (843)
T ss_pred             CCCCHHHHHHHHHHh
Confidence            355555555555554

>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol

Probab=84.75  E-value=6  Score=40.48  Aligned_cols=99  Identities=16%  Similarity=0.132  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhhCCCceEEECCCCCCccC--------c-CCCCeEEEEec-cCCCCCCchHHHHHHHHHHhhcCcccc
Q 038595           81 SKTLAKRLHALLTSNDLLFDLVDPQTYEPED--------L-SKEALVLIVAS-SWEDGKPPEAAKFFMNWIDESANDFRV  150 (534)
Q Consensus        81 TE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d--------L-~~~~lvIfv~S-TYg~G~pPdna~~Fle~L~e~~~DFRv  150 (534)
                      ...+|++|.+.+.+.|+++..++-.+...+.        + ++.++-++.++ ... ...|.....|=+.|.+...+   
T Consensus        86 ~~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~-~~~~~~~~~lG~al~~~l~~---  161 (268)
T cd07371          86 DVELAEACVEEGRKAGLVTRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNL-YLSGEETEGEMDLAGKATRD---  161 (268)
T ss_pred             CHHHHHHHHHHHHHCCCcEEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCc-CCCHHHHHHHHHHHHHHHHH---
Confidence            5679999999999999998876555553333        1 23343333333 222 33455555666666543211   


Q ss_pred             cccCCCCCeEEEEEecCcchH---H--------HHHHHHHHHHHHHHHc
Q 038595          151 GSLLLSNCKFAVFGVGSKSYE---K--------TFNMVAKDLSKKMREL  188 (534)
Q Consensus       151 ~~~~Lkgl~yAVFGLGDs~Y~---e--------~Fc~aAK~LDk~L~kL  188 (534)
                           .+++++|+|+|+.+..   +        .|...++.+|+++.++
T Consensus       162 -----~~~rv~iIgSG~lsH~l~~~~~~~~~~~~~~~~~~~fD~~~~~~  205 (268)
T cd07371         162 -----AGKRVAVLGSGGLSHSHFHEEIDPPKDHIESEEGDKWNRRMLEL  205 (268)
T ss_pred             -----cCCcEEEEEecCccccccCCCCCcccccccchhhHHHHHHHHHH
Confidence                 2579999999998642   1        2335677777776554

This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.

>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase

Probab=83.85  E-value=1.8  Score=41.00  Aligned_cols=42  Identities=26%  Similarity=0.385  Sum_probs=33.9

Q ss_pred             cCCceEEEeecC--------CCC---------CCccHHHHHHHHHhcCCcEEEEcCCCC
Q 038595          452 LTPRHCALSLVG--------EPI---------MYPEINTLVDELHRRRISTFLVTNAQF  493 (534)
Q Consensus       452 ~~~~h~alSl~G--------EPl---------Lyp~L~elI~~lk~~gi~~~LvTNGtl  493 (534)
                      |+.+.+++.+.|        .|.         +||.+.++++.|++.|+++.++||+..
T Consensus        11 ~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~   69 (166)
T TIGR01664        11 PQSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSG   69 (166)
T ss_pred             CcCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence            455666666655        344         789999999999999999999999875

The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.

>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA

Probab=83.79  E-value=1.8  Score=38.42  Aligned_cols=30  Identities=33%  Similarity=0.557  Sum_probs=27.9

Q ss_pred             CCCCCCccHHHHHHHHHhcCCcEEEEcCCC
Q 038595          463 GEPIMYPEINTLVDELHRRRISTFLVTNAQ  492 (534)
Q Consensus       463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGt  492 (534)
                      ++-.+||.+.++++.|++.|+++.++||+.
T Consensus        22 ~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~   51 (132)
T TIGR01662        22 DERILYPEVPDALAELKEAGYKVVIVTNQS   51 (132)
T ss_pred             HHheeCCCHHHHHHHHHHCCCEEEEEECCc
Confidence            566789999999999999999999999987

In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase

Probab=82.30  E-value=3.1  Score=39.42  Aligned_cols=58  Identities=14%  Similarity=0.200  Sum_probs=42.1

Q ss_pred             CCCccHHHHHHHHHhcCCcEEEEcCCCCH--HHHhhcC--C-CceEEEEeeC----CCHHHHHhhcC
Q 038595          466 IMYPEINTLVDELHRRRISTFLVTNAQFP--DKIKLLK--P-VTQLYVSVDA----ATKDSLKAIDR  523 (534)
Q Consensus       466 lLyp~L~elI~~lk~~gi~~~LvTNGtlp--e~l~~L~--~-v~qlyvSlDA----~~~e~y~~I~r  523 (534)
                      .++|...++++.|+++|+++.++||+...  ..++.+-  . .+.++.|-+.    |+++.|..+.+
T Consensus       105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~  171 (203)
T TIGR02252       105 QVYPDAIKLLKDLRERGLILGVISNFDSRLRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALE  171 (203)
T ss_pred             eeCcCHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHH
Confidence            57899999999999999999999998742  2333321  1 4667766553    67777876654

Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.

>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668

Probab=82.26  E-value=4  Score=38.57  Aligned_cols=80  Identities=13%  Similarity=0.171  Sum_probs=50.4

Q ss_pred             ccHHHhhhccCCceEEEeec------CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCC-CceE-EEEeeCCC
Q 038595          443 VTLERLNEGLTPRHCALSLV------GEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKP-VTQL-YVSVDAAT  514 (534)
Q Consensus       443 ~~~~~~~ea~~~~h~alSl~------GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~-v~ql-yvSlDA~~  514 (534)
                      ++.+.+.+ ..++.+.+-+.      +.-.+||.+.++++.+++.|+.++++||+........+.. .... +...--|+
T Consensus        15 i~~~~~~~-~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~~~~KP~   93 (170)
T TIGR01668        15 LTIDLLKK-VGIKGVVLDKDNTLVYPDHNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVLPHAVKPP   93 (170)
T ss_pred             CCHHHHHH-CCCCEEEEecCCccccCCCCCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEEcCCCCCC
Confidence            67777765 35666666553      3335789999999999999999999999973232222221 1111 11112456


Q ss_pred             HHHHHhhcC
Q 038595          515 KDSLKAIDR  523 (534)
Q Consensus       515 ~e~y~~I~r  523 (534)
                      ++.|..+.+
T Consensus        94 p~~~~~~l~  102 (170)
T TIGR01668        94 GCAFRRAHP  102 (170)
T ss_pred             hHHHHHHHH
Confidence            777766544

This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.

>PRK14988 GMP/IMP nucleotidase; Provisional

Probab=82.08  E-value=2.5  Score=41.58  Aligned_cols=61  Identities=13%  Similarity=0.189  Sum_probs=42.7

Q ss_pred             CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHH---HHhhc--CC-CceEEEEeeC----CCHHHHHhhcC
Q 038595          463 GEPIMYPEINTLVDELHRRRISTFLVTNAQFPD---KIKLL--KP-VTQLYVSVDA----ATKDSLKAIDR  523 (534)
Q Consensus       463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe---~l~~L--~~-v~qlyvSlDA----~~~e~y~~I~r  523 (534)
                      -+..++|.+.++++.||++|+++.++||+....   .++.+  .+ .+.+..|=+.    |+++.|..+.+
T Consensus        90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~  160 (224)
T PRK14988         90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAE  160 (224)
T ss_pred             ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHH
Confidence            335679999999999999999999999998633   23322  22 4555555443    66777877644

>TIGR01990 bPGM beta-phosphoglucomutase

Probab=81.62  E-value=3.4  Score=38.19  Aligned_cols=59  Identities=17%  Similarity=0.290  Sum_probs=40.6

Q ss_pred             CCCCccHHHHHHHHHhcCCcEEEEcCCCC-HHHHhhcC--C-CceEEEEee----CCCHHHHHhhcC
Q 038595          465 PIMYPEINTLVDELHRRRISTFLVTNAQF-PDKIKLLK--P-VTQLYVSVD----AATKDSLKAIDR  523 (534)
Q Consensus       465 PlLyp~L~elI~~lk~~gi~~~LvTNGtl-pe~l~~L~--~-v~qlyvSlD----A~~~e~y~~I~r  523 (534)
                      +.++|.+.++++.||++|+++.++||+.. ...++.+-  . ++.+.-|-+    -|+++.|..+.+
T Consensus        86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~  152 (185)
T TIGR01990        86 ADVLPGIKNLLDDLKKNNIKIALASASKNAPTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAE  152 (185)
T ss_pred             cccCccHHHHHHHHHHCCCeEEEEeCCccHHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHH
Confidence            46799999999999999999999999865 33343332  1 333332322    467777777654

The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.

>PTZ00413 lipoate synthase; Provisional

Probab=81.02  E-value=8.8  Score=41.91  Aligned_cols=150  Identities=14%  Similarity=0.222  Sum_probs=88.1

Q ss_pred             HHHHHHhhhcCceEEecccceeeehhhhhhhcCCCccccce-eeeccCCeeeeecccccccccccccccCCCCCCCCccc
Q 038595          300 PVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHS-FYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQ  378 (534)
Q Consensus       300 ~~~~~~l~~~gy~~~~~h~~vk~c~w~~~~~~~~~~cyk~~-fygi~s~~c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~  378 (534)
                      ..+++.|++.+-+-|-.-.   .|       -..|-|+.+. =-|-..---|-|  -..|.-+|-||-..+..+.     
T Consensus       112 ~~~~~~~~~~~L~TVCeea---~C-------PNi~EC~~~~~~~~~~tATfmil--G~~CTr~C~FCaqstg~~p-----  174 (398)
T PTZ00413        112 NRIRRSMREKKLHTVCEEA---KC-------PNIGECWGGGDEEGTATATIMVM--GDHCTRGCRFCSVKTSRKP-----  174 (398)
T ss_pred             HHHHHHHHhCCCceeeCCC---CC-------CChHHHhCCCCCCCCceeEeeec--CCCCCCCCCCCCCCCCCCC-----
Confidence            3457777777777665211   12       2556677653 111111112222  2369999999999764421     


Q ss_pred             ccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCCCCCcccccccHHHhhhccCCceEE
Q 038595          379 WKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCA  458 (534)
Q Consensus       379 ~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~a  458 (534)
                       ..-||+|+++.|..     ++.+ |                                                 .+|+.
T Consensus       175 -~~lD~eEp~~vA~a-----v~~~-G-------------------------------------------------l~~~V  198 (398)
T PTZ00413        175 -PPLDPNEPEKVAKA-----VAEM-G-------------------------------------------------VDYIV  198 (398)
T ss_pred             -CCCCHHHHHHHHHH-----HHHc-C-------------------------------------------------CCEEE
Confidence             23588999988753     2322 2                                                 23444


Q ss_pred             Eeec-CCCCCC---ccHHHHHHHHHhc--CCcEEEEcCCC---CHHHHhhcCC--CceEEEEeeCCCHHHHHhhcCC
Q 038595          459 LSLV-GEPIMY---PEINTLVDELHRR--RISTFLVTNAQ---FPDKIKLLKP--VTQLYVSVDAATKDSLKAIDRP  524 (534)
Q Consensus       459 lSl~-GEPlLy---p~L~elI~~lk~~--gi~~~LvTNGt---lpe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP  524 (534)
                      |.-+ +..+-.   .++.+.|+.+|+.  ++.+.+.+ |.   .++.++.|..  ++.+.--|+. .+..|.+|+.|
T Consensus       199 VTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~Ievli-gDf~g~~e~l~~L~eAG~dvynHNLET-v~rLyp~VRt~  273 (398)
T PTZ00413        199 MTMVDRDDLPDGGASHVARCVELIKESNPELLLEALV-GDFHGDLKSVEKLANSPLSVYAHNIEC-VERITPYVRDR  273 (398)
T ss_pred             EEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEEEcC-CccccCHHHHHHHHhcCCCEEeccccc-CHhHHHHHccC
Confidence            4433 322322   3677888888875  45554443 22   2577777775  7888888888 78889999964

>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II

Probab=80.88  E-value=2.3  Score=40.26  Aligned_cols=59  Identities=8%  Similarity=0.026  Sum_probs=40.4

Q ss_pred             CCCCccHHHHHHHHHhcCCcEEEEcCCCCHHH---Hhhc--CC-CceEEEEee----CCCHHHHHhhcC
Q 038595          465 PIMYPEINTLVDELHRRRISTFLVTNAQFPDK---IKLL--KP-VTQLYVSVD----AATKDSLKAIDR  523 (534)
Q Consensus       465 PlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~---l~~L--~~-v~qlyvSlD----A~~~e~y~~I~r  523 (534)
                      ..++|...++++.|+++|+++.++||+.....   ++.+  .. .+.++.|=+    -|+++.|..+.+
T Consensus        91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~  159 (198)
T TIGR01428        91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALE  159 (198)
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHH
Confidence            35789999999999999999999999986432   3322  11 344444432    356777776543

Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.

>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]

Probab=80.76  E-value=0.64  Score=51.55  Aligned_cols=64  Identities=22%  Similarity=0.304  Sum_probs=54.4

Q ss_pred             EEEecCcchH-----HHHHHHHHHHHHHHHHcCCceecceEEeeCCC-CCcHHHHHHHHHHHHHHHHhcC
Q 038595          162 VFGVGSKSYE-----KTFNMVAKDLSKKMRELGAGEVLPVVEGDVDG-GELDVVFEDWSKRVVAILKSGG  225 (534)
Q Consensus       162 VFGLGDs~Y~-----e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~-g~~e~~f~eW~~~L~~~L~~~~  225 (534)
                      |||+||+.|.     ..|++..|.+..+|..|+|....+++.|++++ +........|.-.||++|....
T Consensus         1 vfgfs~tf~~Pk~~~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~~   70 (638)
T KOG0560|consen    1 VFGFSDTFYWPKEDKSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKGI   70 (638)
T ss_pred             CccccccccCcccCccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCCC
Confidence            6899999764     37899999999999999999999999988864 3567888999999999996543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	534
2yx0_A	342	Crystal Structure Of P. Horikoshii Tyw1 Length = 34		1e-38
2z2u_A	311	Crystal Structure Of Archaeal Tyw1 Length = 311		1e-28
3qe2_A	618	Crystal Structure Of Human Nadph-Cytochrome P450 Re		6e-15
3qfc_A	618	Crystal Structure Of Human Nadph-Cytochrome P450 (V		7e-15
3qfr_A	618	Crystal Structure Of Human Nadph-Cytochrome P450 Re		7e-15
1b1c_A	181	Crystal Structure Of The Fmn-Binding Domain Of Huma		2e-14
1j9z_A	622	Cypor-W677g Length = 622		6e-14
1ja0_A	620	Cypor-W677x Length = 620		6e-14
1ja1_A	622	Cypor-Triple Mutant Length = 622		6e-14
1amo_A	615	Three-Dimensional Structure Of Nadph-Cytochrome P45		7e-14
3es9_A	618	Nadph-Cytochrome P450 Reductase In An Open Conforma		7e-14
3ojx_A	622	Disulfide Crosslinked Cytochrome P450 Reductase Ina		3e-13
1ykg_A	167	Solution Structure Of The Flavodoxin-Like Domain Fr		1e-12
3hr4_A	219	Human Inos Reductase And Calmodulin Complex Length		5e-09
3fjo_A	637	Structure Of Chimeric Yh Cpr Length = 637		9e-08
2bf4_A	682	A Second Fmn-Binding Site In Yeast Nadph-Cytochrome		2e-07
1tll_A	688	Crystal Structure Of Rat Neuronal Nitric-Oxide Synt		3e-07
1bvy_F	191	Complex Of The Heme And Fmn-Binding Domains Of The		4e-07
2bpo_A	682	Crystal Structure Of The Yeast Cpr Triple Mutant: D		4e-07

>pdb|2YX0|A Chain A, Crystal Structure Of P. Horikoshii Tyw1 Length = 342

Iteration: 1
 Score =  157 bits (397), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/234 (37%), Positives = 118/234 (50%), Gaps = 40/234 (17%)
Query: 306 LEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLA-CANKCVF 364
             KQ Y+I+G HSGVK+C W K  L     CYK  FYGI SHRC++ TP LA C + C+F
Sbjct: 28  FRKQHYEIVGRHSGVKLCHWLKKSLTEGRFCYKQKFYGIHSHRCLQMTPVLAWCTHNCIF 87
Query: 365 CWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVS 424
           CWR   N +G       DDP  IV  +I    K++   KG P                  
Sbjct: 88  CWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNP------------------ 129
Query: 425 SAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRIS 484
             +DK+                +  E   P H A+SL GEP++YP +  LV+E H+R  +
Sbjct: 130 -KVDKK----------------KFEEAWNPTHAAISLSGEPMLYPYMGDLVEEFHKRGFT 172
Query: 485 TFLVTNAQFPDK----IKLLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFL 534
           TF+VTN   P++    IK  K  TQLYVS+ A   ++  +++ P+  D WER L
Sbjct: 173 TFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERIL 226

>pdb|2Z2U|A Chain A, Crystal Structure Of Archaeal Tyw1 Length = 311

Iteration: 1
 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 52/248 (20%)
Query: 297 MVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSL 356
           M+   I   L KQ Y+I G H+ VK+C W + ++     CYK  FYGIE+HRC++ TPS+
Sbjct: 1   MIPEEIYKILRKQRYQIDG-HTAVKLCGWVRKKMLEDKNCYKSKFYGIETHRCIQCTPSV 59
Query: 357 A-CANKCVFCWRHHTNPVG------KSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEY 409
             C   C+FCWR     +G      K  +W  ++P  +    + +H ++I    GV    
Sbjct: 60  IWCQQNCIFCWRVLPRDIGIDISQIKEPKW--EEPEVVYEKILAMHKRIIMGYAGV---- 113
Query: 410 SIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYP 469
                LD                   GE+K          E L P+H A+SL GEP +YP
Sbjct: 114 -----LDRV-----------------GEKK--------FKEALEPKHVAISLSGEPTLYP 143
Query: 470 EINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKDSLKAIDRPLFG-- 527
            ++ L+   H+   +TF+V+N    D I+ ++P TQLY+S+DA   DS     R + G  
Sbjct: 144 YLDELIKIFHKNGFTTFVVSNGILTDVIEKIEP-TQLYISLDAYDLDSY----RRICGGK 198
Query: 528 -DFWERFL 534
            ++WE  L
Sbjct: 199 KEYWESIL 206

>pdb|3QE2|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase Length = 618

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 14/150 (9%)
Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-----EALVLIVASSWE 126
           +F+ SQTGT++  A RL        +     DP+ Y+  DLS       ALV+   +++ 
Sbjct: 23  VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYG 82
Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
           +G P + A+ F +W+ E+  D       LS  KFAVFG+G+K+YE  FN + K + K++ 
Sbjct: 83  EGDPTDNAQDFYDWLQETDVD-------LSGVKFAVFGLGNKTYEH-FNAMGKYVDKRLE 134
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
           +LGA  +  +  GD D G L+  F  W ++
Sbjct: 135 QLGAQRIFELGLGD-DDGNLEEDFITWREQ 163

>pdb|3QFC|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e Mutant) Length = 618

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 14/150 (9%)
Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-----EALVLIVASSWE 126
           +F+ SQTGT++  A RL        +     DP+ Y+  DLS       ALV+   +++ 
Sbjct: 23  VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYG 82
Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
           +G P + A+ F +W+ E+  D       LS  KFAVFG+G+K+YE  FN + K + K++ 
Sbjct: 83  EGDPTDNAQDFYDWLQETDVD-------LSGVKFAVFGLGNKTYEH-FNAMGKYVDKRLE 134
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
           +LGA  +  +  GD D G L+  F  W ++
Sbjct: 135 QLGAQRIFELGLGD-DDGNLEEDFITWREQ 163

>pdb|3QFR|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase (R457h Mutant) Length = 618

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 14/150 (9%)
Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-----EALVLIVASSWE 126
           +F+ SQTGT++  A RL        +     DP+ Y+  DLS       ALV+   +++ 
Sbjct: 23  VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYG 82
Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
           +G P + A+ F +W+ E+  D       LS  KFAVFG+G+K+YE  FN + K + K++ 
Sbjct: 83  EGDPTDNAQDFYDWLQETDVD-------LSGVKFAVFGLGNKTYEH-FNAMGKYVDKRLE 134
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
           +LGA  +  +  GD D G L+  F  W ++
Sbjct: 135 QLGAQRIFELGLGD-DDGNLEEDFITWREQ 163

>pdb|1B1C|A Chain A, Crystal Structure Of The Fmn-Binding Domain Of Human Cytochrome P450 Reductase At 1.93a Resolution Length = 181

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 14/150 (9%)
Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-----EALVLIVASSWE 126
           +F+ SQTGT++  A RL        +     DP+ Y+  DLS       ALV+   +++ 
Sbjct: 22  VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYG 81
Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
           +G P + A+ F +W+ E+  D       LS  KFAVFG+G+K+YE  FN + K + K++ 
Sbjct: 82  EGDPTDNAQDFYDWLQETDVD-------LSGVKFAVFGLGNKTYEH-FNAMGKYVDKRLE 133
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
           +LGA  +  +  GD D G L+  F  W ++
Sbjct: 134 QLGAQRIFELGLGD-DDGNLEEDFITWREQ 162

>pdb|1J9Z|A Chain A, Cypor-W677g Length = 622

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 14/150 (9%)
Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-----EALVLIVASSWE 126
           +F+ SQTGT++  A RL        +     DP+ Y+  DLS      ++LV+   +++ 
Sbjct: 26  VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYG 85
Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
           +G P + A+ F +W+ E+  D       L+  KFAVFG+G+K+YE  FN + K + +++ 
Sbjct: 86  EGDPTDNAQDFYDWLQETDVD-------LTGVKFAVFGLGNKTYEH-FNAMGKYVDQRLE 137
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
           +LGA  +  +  GD D G L+  F  W ++
Sbjct: 138 QLGAQRIFELGLGD-DDGNLEEDFITWREQ 166

>pdb|1JA0|A Chain A, Cypor-W677x Length = 620

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 14/150 (9%)
Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-----EALVLIVASSWE 126
           +F+ SQTGT++  A RL        +     DP+ Y+  DLS      ++LV+   +++ 
Sbjct: 26  VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYG 85
Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
           +G P + A+ F +W+ E+  D       L+  KFAVFG+G+K+YE  FN + K + +++ 
Sbjct: 86  EGDPTDNAQDFYDWLQETDVD-------LTGVKFAVFGLGNKTYEH-FNAMGKYVDQRLE 137
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
           +LGA  +  +  GD D G L+  F  W ++
Sbjct: 138 QLGAQRIFELGLGD-DDGNLEEDFITWREQ 166

>pdb|1JA1|A Chain A, Cypor-Triple Mutant Length = 622

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 14/150 (9%)
Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-----EALVLIVASSWE 126
           +F+ SQTGT++  A RL        +     DP+ Y+  DLS      ++LV+   +++ 
Sbjct: 26  VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYG 85
Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
           +G P + A+ F +W+ E+  D       L+  KFAVFG+G+K+YE  FN + K + +++ 
Sbjct: 86  EGDPTDNAQDFYDWLQETDVD-------LTGVKFAVFGLGNKTYEH-FNAMGKYVDQRLE 137
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
           +LGA  +  +  GD D G L+  F  W ++
Sbjct: 138 QLGAQRIFELGLGD-DDGNLEEDFITWREQ 166

>pdb|1AMO|A Chain A, Three-Dimensional Structure Of Nadph-Cytochrome P450 Reductase: Prototype For Fmn-And Fad-Containing Enzymes Length = 615

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 14/150 (9%)
Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-----EALVLIVASSWE 126
           +F+ SQTGT++  A RL        +     DP+ Y+  DLS      ++LV+   +++ 
Sbjct: 19  VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYG 78
Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
           +G P + A+ F +W+ E+  D       L+  KFAVFG+G+K+YE  FN + K + +++ 
Sbjct: 79  EGDPTDNAQDFYDWLQETDVD-------LTGVKFAVFGLGNKTYEH-FNAMGKYVDQRLE 130
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
           +LGA  +  +  GD D G L+  F  W ++
Sbjct: 131 QLGAQRIFELGLGD-DDGNLEEDFITWREQ 159

>pdb|3ES9|A Chain A, Nadph-Cytochrome P450 Reductase In An Open Conformation Length = 618

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 14/150 (9%)
Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-----EALVLIVASSWE 126
           +F+ SQTGT++  A RL        +     DP+ Y+  DLS      ++LV+   +++ 
Sbjct: 26  VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYG 85
Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
           +G P + A+ F +W+ E+  D       L+  KFAVFG+G+K+YE  FN + K + +++ 
Sbjct: 86  EGDPTDNAQDFYDWLQETDVD-------LTGVKFAVFGLGNKTYEH-FNAMGKYVDQRLE 137
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
           +LGA  +  +  GD D G L+  F  W ++
Sbjct: 138 QLGAQRIFELGLGD-DDGNLEEDFITWREQ 166

>pdb|3OJX|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive Length = 622

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 14/150 (9%)
Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-----EALVLIVASSWE 126
           +F+ SQTGT++  A RL        +     DP+ Y+  DLS      ++LV+   +++ 
Sbjct: 26  VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFAMATYG 85
Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
           +G P   A+ F +W+ E+  D       L+  KFAVFG+G+K+YE  FN + K + +++ 
Sbjct: 86  EGDPTCNAQDFYDWLQETDVD-------LTGVKFAVFGLGNKTYEH-FNAMGKYVDQRLE 137
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
           +LGA  +  +  GD D G L+  F  W ++
Sbjct: 138 QLGAQRIFELGLGD-DDGNLEEDFITWREQ 166

>pdb|1YKG|A Chain A, Solution Structure Of The Flavodoxin-Like Domain From The Escherichia Coli Sulfite Reductase Length = 167

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/148 (33%), Positives = 74/148 (50%), Gaps = 10/148 (6%)
Query: 76  SQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAK 135
           SQTG ++ +A+ L   L +  L   LV+   Y+ + ++ E L+++V S+  +G+PPE A 
Sbjct: 18  SQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAV 77
Query: 136 FFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLP 195
               ++      F   +  L N  FAVF +G  SYE  F    KD   K+ ELG   +L 
Sbjct: 78  ALHKFL------FSKKAPKLENTAFAVFSLGDTSYE-FFCQSGKDFDSKLAELGGERLLD 130
Query: 196 VVEGDVDGGELDVVFEDWSKRVVAILKS 223
            V+ DV   E      +W  RVV  LKS
Sbjct: 131 RVDADV---EYQAAASEWRARVVDALKS 155

>pdb|3HR4|A Chain A, Human Inos Reductase And Calmodulin Complex Length = 219

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 20/148 (13%)
Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFD--LVDPQTYEPEDLSKEALVLIVASSWEDGK 129
           + F ++TG S+ LA  L AL +     F+  +V    Y    L +E L+L+V S++ +G 
Sbjct: 45  ILFATETGKSEALAWDLGALFSCA---FNPKVVCMDKYRLSCLEEERLLLVVTSTFGNGD 101
Query: 130 PP---EAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
            P   E  K  +  + E  N FR          +AVFG+GS  Y + F   A D+ +K+ 
Sbjct: 102 CPGNGEKLKKSLFMLKELNNKFR----------YAVFGLGSSMYPR-FCAFAHDIDQKLS 150
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWS 214
            LGA ++ P+ EGD   G+ D  F  W+
Sbjct: 151 HLGASQLTPMGEGDELSGQED-AFRSWA 177

>pdb|3FJO|A Chain A, Structure Of Chimeric Yh Cpr Length = 637

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 9/153 (5%)
Query: 72  LFFISQTGTSKTLAKRLHALLTSN-DLLFDLVDPQTYEPEDLSK-EALVLIVASSWEDGK 129
           + + SQTGT++  AK+    L +  +L     D + Y+ E L+    +V I  S++ +G 
Sbjct: 43  VLYASQTGTAEDYAKKFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIFISTYGEGD 102
Query: 130 PPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELG 189
            P+ A  F ++I  +      G+L  SN ++ +FG+G+ +YE  FN  AK   K +   G
Sbjct: 103 FPDGAVNFEDFICNA----EAGAL--SNLRYNMFGLGNSTYE-FFNGAAKKAEKHLSAAG 155
Query: 190 AGEVLPVVEGDVDGGELDVVFEDWSKRVVAILK 222
           A  +  + E D   G  D  +  W   ++ +LK
Sbjct: 156 AIRLGKLGEADDGAGTTDEDYMAWKDSILEVLK 188

>pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450 Reductase Suggests A Novel Mechanism Of Electron Transfer By Diflavin Reductases. Length = 682

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 9/153 (5%)
Query: 72  LFFISQTGTSKTLAKRLHALLTSN-DLLFDLVDPQTYEPEDLSK-EALVLIVASSWEDGK 129
           + + SQTGT++  AK+    L +  +L     D + Y+ E L+    +V I  S++ +G 
Sbjct: 54  VLYASQTGTAEDYAKKFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIFISTYGEGD 113
Query: 130 PPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELG 189
            P+ A  F ++I  +      G+L  SN ++ +FG+G+ +YE  FN  AK   K +   G
Sbjct: 114 FPDGAVNFEDFICNA----EAGAL--SNLRYNMFGLGNSTYE-FFNGAAKKAEKHLSAAG 166
Query: 190 AGEVLPVVEGDVDGGELDVVFEDWSKRVVAILK 222
           A  +  + E D   G  D  +  W   ++ +LK
Sbjct: 167 AIRLGKLGEADDGAGTTDEDYMAWKDSILEVLK 199

>pdb|1TLL|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase Reductase Module At 2.3 A Resolution. Length = 688

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 42/183 (22%)
Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDL--VDPQTYEPEDLSKEALVLIVASSWEDGK 129
           + + ++TG S+  AK L  +       FD   +  + Y+   L  EALVL+V S++ +G 
Sbjct: 16  ILYATETGKSQAYAKTLCEIFKH---AFDAKAMSMEEYDIVHLEHEALVLVVTSTFGNGD 72
Query: 130 PPEAAKFF---------MNWIDESANDFRV-----------------GSLL--------- 154
           PPE  + F          N + E    ++V                 G  L         
Sbjct: 73  PPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGP 132
Query: 155 LSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWS 214
           L+N +F+VFG+GS++Y   F      +   + ELG   +L + EGD   G+ +  F  W+
Sbjct: 133 LANVRFSVFGLGSRAYPH-FCAFGHAVDTLLEELGGERILKMREGDELCGQ-EEAFRTWA 190
Query: 215 KRV 217
           K+V
Sbjct: 191 KKV 193

>pdb|1BVY|F Chain F, Complex Of The Heme And Fmn-Binding Domains Of The Cytochrome P450(Bm-3) Length = 191

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP 131
           + + S  GT++  A+ L  +  S      +    ++   +L +E  VLIV +S+ +G PP
Sbjct: 26  VLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSH-AGNLPREGAVLIVTASY-NGHPP 83
Query: 132 EAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAG 191
           + AK F++W+D+++ D   G       +++VFG G K++  T+  V   + + +   GA 
Sbjct: 84  DNAKQFVDWLDQASADEVKG------VRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAE 137
Query: 192 EVLPVVEGDVDGGELDVVFEDWSKRV 217
            +    E D    + +  +E+W + +
Sbjct: 138 NIADRGEADA-SDDFEGTYEEWREHM 162

>pdb|2BPO|A Chain A, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g, Y75f, K78a. Length = 682

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 9/153 (5%)
Query: 72  LFFISQTGTSKTLAKRLHALLTSN-DLLFDLVDPQTYEPEDLSK-EALVLIVASSWEDGK 129
           + + SQTGT++  AK     L +  +L     D + Y+ E L+    +V I  S++ +G 
Sbjct: 54  VLYASQTGTAEGFAKAFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIFISTYGEGD 113
Query: 130 PPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELG 189
            P+ A  F ++I  +      G+L  SN ++ +FG+G+ +YE  FN  AK   K +   G
Sbjct: 114 FPDGAVNFEDFICNA----EAGAL--SNLRYNMFGLGNSTYE-FFNGAAKKAEKHLSAAG 166
Query: 190 AGEVLPVVEGDVDGGELDVVFEDWSKRVVAILK 222
           A  +  + E D   G  D  +  W   ++ +LK
Sbjct: 167 AIRLGKLGEADDGAGTTDEDYMAWKDSILEVLK 199

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	534
2yx0_A	342	Radical SAM enzyme; predicted tRNA modification en	4e-76
2z2u_A	311	UPF0026 protein MJ0257; metal binding protein; 2.4	1e-67
1ykg_A	167	SIR-FP, sulfite reductase [NADPH] flavoprotein alp	2e-36
1bvy_F	191	Protein (cytochrome P450 BM-3); fatty acid monooxy	2e-36
3qe2_A	618	CPR, P450R, NADPH--cytochrome P450 reductase; cypo	2e-31
2hna_A	147	Protein MIOC, flavodoxin; alpha-beta sandwich, fla	2e-31
3hr4_A	219	Nitric oxide synthase, inducible; inducible nitric	7e-31
2bpo_A	682	CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-	2e-29
1tll_A	688	Nitric-oxide synthase, brain; reductase module, FM	2e-27
1f4p_A	147	Flavodoxin; electron transport, flavoprotein, FMN,	2e-24
3f6r_A	148	Flavodoxin; FMN binding, oxidized, electron transp	5e-21
1ag9_A	175	Flavodoxin; electron transport, reductive activati	8e-17
2fcr_A	173	Flavodoxin; electron transport; HET: FMN; 1.80A {C	2e-16
1yob_A	179	Flavodoxin 2, flavodoxin II; alpha-beta fold, non-	6e-16
2wc1_A	182	Flavodoxin; electron transport, flavoprotein; HET:	4e-15
1czn_A	169	Flavodoxin; FMN binding, redox potential, electron	1e-14
1obo_A	169	Flavodoxin; electron transfer, flavoprotein, elect	1e-14
2bmv_A	164	Flavodoxin; electron transport, flavoprotein, FMN,	3e-11
2fz5_A	137	Flavodoxin; alpha/beta doubly-wound topology, non-	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
5nul_A	138	Flavodoxin; electron transport, flavoprotein, FMN;	7e-05

>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} Length = 342

 Score =  243 bits (620), Expect = 4e-76
 Identities = 87/257 (33%), Positives = 122/257 (47%), Gaps = 40/257 (15%)

Query: 283 VAETNGKVKDSKRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFY 342
           +    GK+       +   +     KQ Y+I+G HSGVK+C W K  L     CYK  FY
Sbjct: 5   ITIKPGKITVQANPNMPKEVAELFRKQHYEIVGRHSGVKLCHWLKKSLTEGRFCYKQKFY 64

Query: 343 GIESHRCMEATPSLA-CANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQ 401
           GI SHRC++ TP LA C + C+FCWR   N +G       DDP  IV  +I    K++  
Sbjct: 65  GIHSHRCLQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIG 124

Query: 402 MKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSL 461
            KG P                                    V  ++  E   P H A+SL
Sbjct: 125 YKGNP-----------------------------------KVDKKKFEEAWNPTHAAISL 149

Query: 462 VGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKI----KLLKPVTQLYVSVDAATKDS 517
            GEP++YP +  LV+E H+R  +TF+VTN   P+++    K  K  TQLYVS+ A   ++
Sbjct: 150 SGEPMLYPYMGDLVEEFHKRGFTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIET 209

Query: 518 LKAIDRPLFGDFWERFL 534
             +++ P+  D WER L
Sbjct: 210 YNSVNIPMIPDGWERIL 226

>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} Length = 311

 Score =  220 bits (560), Expect = 1e-67
 Identities = 75/243 (30%), Positives = 116/243 (47%), Gaps = 42/243 (17%)

Query: 297 MVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSL 356
           M+   I   L KQ Y+I G H+ VK+C W + ++     CYK  FYGIE+HRC++ TPS+
Sbjct: 1   MIPEEIYKILRKQRYQIDG-HTAVKLCGWVRKKMLEDKNCYKSKFYGIETHRCIQCTPSV 59

Query: 357 A-CANKCVFCWRHHTNPVGKSW----QWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSI 411
             C   C+FCWR     +G       + K ++P  +    + +H ++I    GV      
Sbjct: 60  IWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVL----- 114

Query: 412 FVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEI 471
                                          V  ++  E L P+H A+SL GEP +YP +
Sbjct: 115 -----------------------------DRVGEKKFKEALEPKHVAISLSGEPTLYPYL 145

Query: 472 NTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWE 531
           + L+   H+   +TF+V+N    D I+ ++P TQLY+S+DA   DS + I      ++WE
Sbjct: 146 DELIKIFHKNGFTTFVVSNGILTDVIEKIEP-TQLYISLDAYDLDSYRRICGGK-KEYWE 203

Query: 532 RFL 534
             L
Sbjct: 204 SIL 206

>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2 Length = 167

 Score =  131 bits (333), Expect = 2e-36
 Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 10/152 (6%)

Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP 131
           +   SQTG ++ +A+ L   L +  L   LV+   Y+ + ++ E L+++V S+  +G+PP
Sbjct: 14  IISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPP 73

Query: 132 EAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAG 191
           E A     ++      F   +  L N  FAVF +G  SYE  F    KD   K+ ELG  
Sbjct: 74  EEAVALHKFL------FSKKAPKLENTAFAVFSLGDTSYEF-FCQSGKDFDSKLAELGGE 126

Query: 192 EVLPVVEGDVDGGELDVVFEDWSKRVVAILKS 223
            +L  V+ DV+         +W  RVV  LKS
Sbjct: 127 RLLDRVDADVE---YQAAASEWRARVVDALKS 155

>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1 Length = 191

 Score =  132 bits (335), Expect = 2e-36
 Identities = 40/168 (23%), Positives = 80/168 (47%), Gaps = 9/168 (5%)

Query: 56  SDYRKKPENPNPNKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKE 115
              RKK EN +     + + S  GT++  A+ L  +  S      +    ++   +L +E
Sbjct: 10  KKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSH-AGNLPRE 68

Query: 116 ALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFN 175
             VLIV +S+  G PP+ AK F++W+D+++ D       +   +++VFG G K++  T+ 
Sbjct: 69  GAVLIVTASYN-GHPPDNAKQFVDWLDQASADE------VKGVRYSVFGCGDKNWATTYQ 121

Query: 176 MVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKS 223
            V   + + +   GA  +    E D      +  +E+W + + + + +
Sbjct: 122 KVPAFIDETLAAKGAENIADRGEADASDD-FEGTYEEWREHMWSDVAA 168

>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A* Length = 618

 Score =  127 bits (321), Expect = 2e-31
 Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 20/219 (9%)

Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-----EALVLIVASSWE 126
           +F+ SQTGT++  A RL        +     DP+ Y+  DLS       ALV+   +++ 
Sbjct: 23  VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYG 82

Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
           +G P + A+ F +W+ E         + LS  KFAVFG+G+K+YE  FN + K + K++ 
Sbjct: 83  EGDPTDNAQDFYDWLQE-------TDVDLSGVKFAVFGLGNKTYE-HFNAMGKYVDKRLE 134

Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGGDRLENGIVNGEASIVGVESDP 246
           +LGA  +  +  GD DG  L+  F  W ++    +       E+  V        +    
Sbjct: 135 QLGAQRIFELGLGDDDGN-LEEDFITWREQFWLAVC------EHFGVEATGEESSIRQYE 187

Query: 247 VYHEYDDDEEEEDVVESEMVDLEDIAGKGPSRRSVNVAE 285
           +    D D  +  + E   +   +        ++  +A 
Sbjct: 188 LVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAA 226

>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A Length = 147

 Score =  117 bits (295), Expect = 2e-31
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 11/152 (7%)

Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP 131
           L   S  G ++ +A+ L   L       + +       EDL    + L+++S+   G  P
Sbjct: 6   LISGSTLGGAEYVAEHLAEKLEEAGFTTETLHG--PLLEDLPASGIWLVISSTHGAGDIP 63

Query: 132 EAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAG 191
           +    F   + E   D       LS  +F   G+GS+ Y+ TF      L  +++  GA 
Sbjct: 64  DNLSPFYEALQEQKPD-------LSAVRFGAIGIGSREYD-TFCGAIDKLEAELKNSGAK 115

Query: 192 EVLPVVEGDV-DGGELDVVFEDWSKRVVAILK 222
           +    ++ ++ D    +   E+W    V +LK
Sbjct: 116 QTGETLKINILDHDIPEDPAEEWLGSWVNLLK 147

>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, alternative splicing, calcium, calmodulin-binding, FAD, FMN, heme, iron, metal-binding; HET: FMN; 2.50A {Homo sapiens} Length = 219

 Score =  118 bits (298), Expect = 7e-31
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 10/151 (6%)

Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP 131
           + F ++TG S+ LA  L AL +       +V    Y    L +E L+L+V S++ +G  P
Sbjct: 45  ILFATETGKSEALAWDLGALFSCA-FNPKVVCMDKYRLSCLEEERLLLVVTSTFGNGDCP 103

Query: 132 EAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAG 191
              +     +            L +  ++AVFG+GS  Y + F   A D+ +K+  LGA 
Sbjct: 104 GNGEKLKKSLFML-------KELNNKFRYAVFGLGSSMYPR-FCAFAHDIDQKLSHLGAS 155

Query: 192 EVLPVVEGDVDGGELDVVFEDWSKRVVAILK 222
           ++ P+ EGD +    +  F  W+ +      
Sbjct: 156 QLTPMGEGD-ELSGQEDAFRSWAVQTFKAAC 185

>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A* Length = 682

 Score =  121 bits (306), Expect = 2e-29
 Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 9/211 (4%)

Query: 72  LFFISQTGTSKTLAKRLHALLTS-NDLLFDLVDPQTYEPEDLSKEA-LVLIVASSWEDGK 129
           + + SQTGT++  AK     L +  +L     D + Y+ E L+    +V I  S++ +G 
Sbjct: 54  VLYASQTGTAEGFAKAFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIFISTYGEGD 113

Query: 130 PPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELG 189
            P+ A  F ++I  +          LSN ++ +FG+G+ +YE  FN  AK   K +   G
Sbjct: 114 FPDGAVNFEDFICNAEAGA------LSNLRYNMFGLGNSTYE-FFNGAAKKAEKHLSAAG 166

Query: 190 AGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGGDRLENGIVNGEASIVGVESDPVYH 249
           A  +  + E D   G  D  +  W   ++ +LK      E            V ++    
Sbjct: 167 AIRLGKLGEADDGAGTTDEDYMAWKDSILEVLKDELHLDEQEAKFTSQFQYTVLNEITDS 226

Query: 250 EYDDDEEEEDVVESEMVDLEDIAGKGPSRRS 280
               +     +   ++    D    GP   S
Sbjct: 227 MSLGEPSAHYLPSHQLNRNADGIQLGPFDLS 257

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4 Length = 688

 Score =  115 bits (290), Expect = 2e-27
 Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 38/186 (20%)

Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP 131
           + + ++TG S+  AK L  +          +  + Y+   L  EALVL+V S++ +G PP
Sbjct: 16  ILYATETGKSQAYAKTLCEIFKHA-FDAKAMSMEEYDIVHLEHEALVLVVTSTFGNGDPP 74

Query: 132 EAAKFFMNWIDE-----------------------------------SANDFRVGSLLLS 156
           E  + F   + E                                      D    +  L+
Sbjct: 75  ENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLA 134

Query: 157 NCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
           N +F+VFG+GS++Y   F      +   + ELG   +L + EGD +    +  F  W+K+
Sbjct: 135 NVRFSVFGLGSRAYP-HFCAFGHAVDTLLEELGGERILKMREGD-ELCGQEEAFRTWAKK 192

Query: 217 VVAILK 222
           V     
Sbjct: 193 VFKAAC 198

>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ... Length = 147

 Score = 98.5 bits (246), Expect = 2e-24
 Identities = 34/156 (21%), Positives = 57/156 (36%), Gaps = 13/156 (8%)

Query: 69  KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEA-LVLIVASSWED 127
           K  + + S TG ++  A+ +   L       D  D  + E   L +   LVL+  S+W D
Sbjct: 2   KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 61

Query: 128 GK--PPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKM 185
                 +      + ++E+              K A FG G  S+E  F      + +K+
Sbjct: 62  DSIELQDDFIPLFDSLEETG---------AQGRKVACFGCGDSSWE-YFCGAVDAIEEKL 111

Query: 186 RELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAIL 221
           + LGA  V   +  D D          W+  V   +
Sbjct: 112 KNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAI 147

>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A* Length = 148

 Score = 88.5 bits (220), Expect = 5e-21
 Identities = 30/151 (19%), Positives = 60/151 (39%), Gaps = 9/151 (5%)

Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEA-LVLIVASSWEDGKP 130
           + F S TG ++++A++L  L+ +      L++      E+L+     VL   S+W     
Sbjct: 6   IVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENLADGYDAVLFGCSAWGMEDL 65

Query: 131 PEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGA 190
                F   + +            L+  K A F  G + YE  F      + ++ +ELGA
Sbjct: 66  EMQDDFLSLFEEFDRIG-------LAGRKVAAFASGDQEYE-HFCGAVPAIEERAKELGA 117

Query: 191 GEVLPVVEGDVDGGELDVVFEDWSKRVVAIL 221
             +   ++ + D          +++ V+  L
Sbjct: 118 TIIAEGLKMEGDASNDPEAVASFAEDVLKQL 148

>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A* Length = 175

 Score = 77.2 bits (190), Expect = 8e-17
 Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 12/133 (9%)

Query: 71  KLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKP 130
            +FF S TG ++ +AK +   L  +    D+ D      EDL    ++L+   +W  G+ 
Sbjct: 4   GIFFGSDTGNTENIAKMIQKQLGKDV--ADVHDIAKSSKEDLEAYDILLLGIPTWYYGEA 61

Query: 131 PEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKS-YEKTFNMVAKDLSKKMRELG 189
                 F   ++E         +  +    A+FG G +  Y + F      +   +   G
Sbjct: 62  QCDWDDFFPTLEE---------IDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRG 112

Query: 190 AGEVLPVVEGDVD 202
           A  V         
Sbjct: 113 ATIVGHWPTAGYH 125

>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1 Length = 173

 Score = 76.1 bits (187), Expect = 2e-16
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 8/136 (5%)

Query: 69  KGKLFFISQTGTSKTLAKRLHALLTS-NDLLFDLVDPQTYEPEDLSKEALVLIVASSWED 127
           K  +FF + TG +  +A  +   L +  D   D+ D    +P+ L    L+ + A +W  
Sbjct: 1   KIGIFFSTSTGNTTEVADFIGKTLGAKADAPIDVDD--VTDPQALKDYDLLFLGAPTWNT 58

Query: 128 GKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKS-YEKTFNMVAKDLSKKMR 186
           G   E +     W +   +      + + +   A+FG+G    Y   F    +++     
Sbjct: 59  GADTERSGTS--WDEFLYDKLP--EVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFA 114

Query: 187 ELGAGEVLPVVEGDVD 202
           + GA  V      D D
Sbjct: 115 KQGAKPVGFSNPDDYD 130

>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1 Length = 179

 Score = 75.0 bits (184), Expect = 6e-16
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 3/135 (2%)

Query: 69  KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDG 128
           K  LFF S TG ++ +AK +      ++ + D ++      ED ++   +++   +  +G
Sbjct: 2   KIGLFFGSNTGKTRKVAKSIKKRF-DDETMSDALNVNRVSAEDFAQYQFLILGTPTLGEG 60

Query: 129 KPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKS-YEKTFNMVAKDLSKKMRE 187
           + P  +    N   E     ++  L  S    A+FG+G +  Y + +     +L    ++
Sbjct: 61  ELPGLSSDAENESWEEFLP-KIEGLDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKD 119

Query: 188 LGAGEVLPVVEGDVD 202
            GA  V        +
Sbjct: 120 RGAKIVGSWSTDGYE 134

>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus} Length = 182

 Score = 72.7 bits (178), Expect = 4e-15
 Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 3/133 (2%)

Query: 71  KLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKP 130
            LFF S TGT++ +AK++  +   ++++   ++    +  D      +++   +  DG+ 
Sbjct: 5   GLFFGSDTGTTRKIAKQIKDMF-DDEVMAKPLNVNRADVADFMAYDFLILGTPTLGDGQL 63

Query: 131 PEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSK-SYEKTFNMVAKDLSKKMRELG 189
           P  +    +   E     R+     S    A+FG+G + +Y   F      L +   + G
Sbjct: 64  PGLSANAASESWEEFLP-RIADQDFSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDRG 122

Query: 190 AGEVLPVVEGDVD 202
           A  V         
Sbjct: 123 ANVVGRWPAKGYG 135

>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A* Length = 169

 Score = 71.1 bits (174), Expect = 1e-14
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 11/135 (8%)

Query: 69  KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDG 128
           K  LF+ +QTG ++T+A+ +       + + DL D    +  DL+    ++I   +W  G
Sbjct: 2   KIGLFYGTQTGVTQTIAESIQQEF-GGESIVDLNDIANADASDLNAYDYLIIGCPTWNVG 60

Query: 129 KPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKS-YEKTFNMVAKDLSKKMRE 187
           +     +   + +D          +     K A FG G +  Y   F      L +K+  
Sbjct: 61  ELQSDWEGIYDDLDS---------VNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISS 111

Query: 188 LGAGEVLPVVEGDVD 202
           LG+  V        D
Sbjct: 112 LGSQTVGYWPIEGYD 126

>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A* Length = 169

 Score = 71.1 bits (174), Expect = 1e-14
 Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 12/132 (9%)

Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP 131
           LF+ +QTG ++++A+ +     ++     L D    E  DL+    ++I   +   G+  
Sbjct: 6   LFYGTQTGKTESVAEIIRDEFGNDV--VTLHDVSQAEVTDLNDYQYLIIGCPTLNIGELQ 63

Query: 132 EAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKS-YEKTFNMVAKDLSKKMRELGA 190
              +   + +D+         +  +    A FG G +  Y   F      L +K+ + G 
Sbjct: 64  SDWEGLYSELDD---------VDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGG 114

Query: 191 GEVLPVVEGDVD 202
             V        D
Sbjct: 115 KTVGYWSTDGYD 126

>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A* Length = 164

 Score = 61.2 bits (148), Expect = 3e-11
 Identities = 20/133 (15%), Positives = 49/133 (36%), Gaps = 16/133 (12%)

Query: 71  KLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKP 130
            +FF + +G ++ +A+++   + + ++    VD      E  +    V++VA +   G  
Sbjct: 5   GIFFGTDSGNAEAIAEKISKAIGNAEV----VDVAKASKEQFNSFTKVILVAPTAGAGDL 60

Query: 131 PEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKS-YEKTFNMVAKDLSKKMRELG 189
               + F+  ++             +N    + G+G +  Y +TF      + +K +   
Sbjct: 61  QTDWEDFLGTLEA---------SDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAK--A 109

Query: 190 AGEVLPVVEGDVD 202
              V         
Sbjct: 110 GKVVGQTSTDGYH 122

>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1 Length = 137

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 15/128 (11%), Positives = 44/128 (34%), Gaps = 15/128 (11%)

Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGK-P 130
           + + S TG ++ +A  + A + +     + V  +    +D++ + ++L+   +    +  
Sbjct: 4   IVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPAMGSEELE 63

Query: 131 PEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGA 190
               + F   +          +  L   K  +FG       +          ++  + GA
Sbjct: 64  DSVVEPFFTDL----------APKLKGKKVGLFGSYGWGSGEWM----DAWKQRTEDTGA 109

Query: 191 GEVLPVVE 198
             +   + 
Sbjct: 110 TVIGTAIV 117

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 64/531 (12%), Positives = 141/531 (26%), Gaps = 146/531 (27%)

Query: 9   RKLVSLQDPENLT------FGKTV---ESRNCSRLQEATTF--Y---FAYKSR------R 48
           + L+ L+  +N+        GKT    +     ++Q    F  +       +        
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 49  LNKFLRHSD---------YRKKPENPNPNKGKL-FFISQTGTSKTL--------AKRLHA 90
           L K L   D                 +  + +L   +        L        AK  +A
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 91  -------LLTSNDL-LFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWID 142
                  LLT+    + D +   T     L   ++ L          P E     + ++D
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL---------TPDEVKSLLLKYLD 312

Query: 143 ESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVD 202
               D     L  +  + ++     +    T++        K+          ++E  ++
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT--------IIESSLN 364

Query: 203 G---GELDVVFEDWSKRVVAILKSGGDRLENGIVNGEASIVGVESDPVYHEYDDDEEEED 259
                E   +F+      +++         +   +    ++      +        +   
Sbjct: 365 VLEPAEYRKMFDR-----LSVFP------PS--AHIPTILLS-----LIWFDVIKSDVMV 406

Query: 260 VVESEMVDLEDIAGKGPSRRSVNV----AETNGKVKDSKRDMVTPVIRASLEKQGYKIIG 315
           VV  ++     +  K P   ++++     E   K+++            +L +    I+ 
Sbjct: 407 VVN-KLHKYSLVE-KQPKESTISIPSIYLELKVKLEN----------EYALHR---SIVD 451

Query: 316 SHSGVK-ICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVG 374
            ++  K                Y +S  G                        HH   + 
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQ--YFYSHIG------------------------HHLKNIE 485

Query: 375 KSWQWKMDDPIEIVNTAIDLH---AKMIKQMKGVPGEYSIF-VLLDF-FYFGTVSSAIDK 429
              +  +   +      +D      K+           SI   L    FY       I  
Sbjct: 486 HPERMTLFRMV-----FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY----KPYICD 536

Query: 430 QIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHR 480
             P  +         L ++ E L        L+   +M  +   + +E H+
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLI-CSKYTDLLRIALMAED-EAIFEEAHK 585

>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A* Length = 138

 Score = 41.8 bits (99), Expect = 7e-05
 Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 13/127 (10%)

Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP 131
           + + S TG ++ +A+ +   +  +    + ++      ++L  E ++++  S+  D    
Sbjct: 3   IVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAMTDEVLE 62

Query: 132 EAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAG 191
           E+   F  +I+E +          S  K A+FG    SY        +D  ++M   G  
Sbjct: 63  ESE--FEPFIEEISTKI-------SGKKVALFG----SYGWGDGKWMRDFEERMNGYGCV 109

Query: 192 EVLPVVE 198
            V   + 
Sbjct: 110 VVETPLI 116

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	534
2z2u_A	311	UPF0026 protein MJ0257; metal binding protein; 2.4	100.0
2yx0_A	342	Radical SAM enzyme; predicted tRNA modification en	100.0
3hr4_A	219	Nitric oxide synthase, inducible; inducible nitric	99.97
1tll_A	688	Nitric-oxide synthase, brain; reductase module, FM	99.96
1bvy_F	191	Protein (cytochrome P450 BM-3); fatty acid monooxy	99.95
3qe2_A	618	CPR, P450R, NADPH--cytochrome P450 reductase; cypo	99.95
1ykg_A	167	SIR-FP, sulfite reductase [NADPH] flavoprotein alp	99.93
2bpo_A	682	CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-	99.93
3f6r_A	148	Flavodoxin; FMN binding, oxidized, electron transp	99.92
2hna_A	147	Protein MIOC, flavodoxin; alpha-beta sandwich, fla	99.92
1f4p_A	147	Flavodoxin; electron transport, flavoprotein, FMN,	99.88
1yob_A	179	Flavodoxin 2, flavodoxin II; alpha-beta fold, non-	99.86
2fcr_A	173	Flavodoxin; electron transport; HET: FMN; 1.80A {C	99.86
2wc1_A	182	Flavodoxin; electron transport, flavoprotein; HET:	99.85
1czn_A	169	Flavodoxin; FMN binding, redox potential, electron	99.84
2bmv_A	164	Flavodoxin; electron transport, flavoprotein, FMN,	99.83
1obo_A	169	Flavodoxin; electron transfer, flavoprotein, elect	99.83
1ag9_A	175	Flavodoxin; electron transport, reductive activati	99.83
5nul_A	138	Flavodoxin; electron transport, flavoprotein, FMN;	99.82
2fz5_A	137	Flavodoxin; alpha/beta doubly-wound topology, non-	99.75
3fni_A	159	Putative diflavin flavoprotein A 3; alpha-beta pro	99.7
3hly_A	161	Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein	99.69
2xod_A	119	NRDI protein, NRDI; flavoprotein, redox protein, r	99.69
1rlj_A	139	NRDI protein; flavoprotein, FMN, thioredoxin, alph	99.61
3n3a_C	153	Protein NRDI; ribonucleotide reductase, four-helix	99.46
1e5d_A	402	Rubredoxin\:oxygen oxidoreductase; oxygenreductase	99.45
1ycg_A	398	Nitric oxide reductase; DIIRON site, oxidoreductas	99.45
4dik_A	410	Flavoprotein; TM0755, electron transport, DI-iron	99.42
3c8f_A	245	Pyruvate formate-lyase 1-activating enzyme; adoMet	99.42
2a5l_A	200	Trp repressor binding protein WRBA; APC5760, PA094	99.41
2ark_A	188	Flavodoxin; FMN, structural genomics, PSI, structu	99.41
1tv8_A	340	MOAA, molybdenum cofactor biosynthesis protein A;	99.38
2ohh_A	404	Type A flavoprotein FPRA; beta-lactamase like doma	99.37
2q9u_A	414	A-type flavoprotein; flavodoxin like, beta lactama	99.36
3b6i_A	198	Flavoprotein WRBA; flavoproteins, NADH:quinone oxi	99.3
2zki_A	199	199AA long hypothetical Trp repressor binding prot	99.26
1ydg_A	211	Trp repressor binding protein WRBA; tetramer, stru	99.26
3rfa_A	404	Ribosomal RNA large subunit methyltransferase N; r	99.24
2vzf_A	197	NADH-dependent FMN reductase; oxidoreductase; 2.50	99.17
3klb_A	162	Putative flavoprotein; structural genomi center fo	99.17
3d7n_A	193	Flavodoxin, WRBA-like protein; structural genomics	99.17
4ici_A	171	Putative flavoprotein; PF12682 family protein, fla	99.15
3can_A	182	Pyruvate-formate lyase-activating enzyme; structur	99.08
1t5b_A	201	Acyl carrier protein phosphodiesterase; structural	99.01
3edo_A	151	Flavoprotein, putative Trp repressor binding prote	98.98
3gfs_A	174	FMN-dependent NADPH-azoreductase; flavoproteins, q	98.91
3iix_A	348	Biotin synthetase, putative; adoMet radical, SAM r	98.86
1sqs_A	242	Conserved hypothetical protein; structural genomic	98.85
1t0i_A	191	YLR011WP; FMN binding protein, flavodoxin, azoredu	98.81
1rtt_A	193	Conserved hypothetical protein; protein structure	98.76
2q62_A	247	ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobi	98.66
2a5h_A	416	L-lysine 2,3-aminomutase; radical SAM, four-iron-f	98.61
1r30_A	369	Biotin synthase; SAM radical protein, TIM barrel,	98.57
3fvw_A	192	Putative NAD(P)H-dependent FMN reductase; Q8DWD8_s	98.57
2hpv_A	208	FMN-dependent NADH-azoreductase; structural genomi	98.57
1rli_A	184	Trp repressor binding protein; structural genomics	98.53
2fzv_A	279	Putative arsenical resistance protein; flavin bind	98.46
3t7v_A	350	Methylornithine synthase PYLB; TIM-barrel fold, mu	98.36
3r6w_A	212	FMN-dependent NADH-azoreductase 1; nitrofurazone,	98.34
4hs4_A	199	Chromate reductase; triple-layered, A/B/A structur	98.19
3lcm_A	196	SMU.1420, putative oxidoreductase; NADPH:quinone o	98.19
3s2y_A	199	Chromate reductase; uranium reductase, oxidoreduct	97.45
3k1y_A	191	Oxidoreductase; structural genomics, PSI-2, protei	98.09
2amj_A	204	Modulator of drug activity B; oxidoreductase, mena	98.05
1d4a_A	273	DT-diaphorase, quinone reductase; flavoprotein, ro	98.04
3rpe_A	218	MDAB, modulator of drug activity B; structural gen	98.03
3f2v_A	192	General stress protein 14; alpha-beta protein., st	98.02
3u7r_A	190	NADPH-dependent FMN reductase; alpha/beta twisted	97.93
3p0r_A	211	Azoreductase; structural genomics, center for stru	97.93
3tem_A	228	Ribosyldihydronicotinamide dehydrogenase [quinone;	97.9
3svl_A	193	Protein YIEF; E. coli CHRR enzyme, chromate biorem	97.89
3u7i_A	223	FMN-dependent NADH-azoreductase 1; structural geno	97.8
1olt_A	457	Oxygen-independent coproporphyrinogen III oxidase;	97.75
2qgq_A	304	Protein TM_1862; alpha-beta protein, structural ge	97.69
3ha2_A	177	NADPH-quinone reductase; structural genomics, PSI-	97.05
4gi5_A	280	Quinone reductase; protein structure initiative, F	96.94
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.9
4fhd_A	368	Spore photoproduct lyase; partial TIM-barrel, DNA	90.73
2pr7_A	137	Haloacid dehalogenase/epoxide hydrolase family; NP	86.97
3ib6_A	189	Uncharacterized protein; structural genomics, unkn	85.14
2fpr_A	176	Histidine biosynthesis bifunctional protein HISB;	80.25

>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=2.2e-42  Score=345.72  Aligned_cols=199  Identities=36%  Similarity=0.743  Sum_probs=165.9

Q ss_pred             cccHHHHHHhhhcCceEEecccceeeehhhhhhhcCCCccccceeeeccCCeeeeeccc-ccccccccccccCCCCCCCC
Q 038595          297 MVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPS-LACANKCVFCWRHHTNPVGK  375 (534)
Q Consensus       297 ~~~~~~~~~l~~~gy~~~~~h~~vk~c~w~~~~~~~~~~cyk~~fygi~s~~c~~~~p~-~~C~~~C~~C~r~~~~~~~~  375 (534)
                      |.++.+++.|+||||+++| ||+||+|+||+++|+++|.|||+.||||.+|+|++++|+ ..||++|.|||++...+.+.
T Consensus         1 ~~~~~~~~~l~~~gy~~~~-~s~~~~~~w~~~~l~~~~~~~~~~~~~~~~~~~l~i~~t~~~Cn~~C~fC~~~~~~~~~~   79 (311)
T 2z2u_A            1 MIPEEIYKILRKQRYQIDG-HTAVKLCGWVRKKMLEDKNCYKSKFYGIETHRCIQCTPSVIWCQQNCIFCWRVLPRDIGI   79 (311)
T ss_dssp             CCCHHHHHHHHTTTCEEET-TEEEECCTTHHHHHTTCCCCHHHHHHCCCGGGEEEEESCSSCCSCC--------------
T ss_pred             CCchHHHHHHHhcCceeec-ccceeeccChHhhhcCCCceEEEEEeeecCCCeEEeccChhHHhCcCcccCCCCCCcccc
Confidence            5667889999999999999 999999999999999999999999999999999999999 59999999999886555554


Q ss_pred             ccc----ccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCCCCCccccccc-HHHhhh
Q 038595          376 SWQ----WKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVT-LERLNE  450 (534)
Q Consensus       376 ~~~----~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e  450 (534)
                      .|+    +...+|++|++.+++.++++++++.|+||                                   |+ .+||++
T Consensus        80 ~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~-----------------------------------v~~~~r~~~  124 (311)
T 2z2u_A           80 DISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLD-----------------------------------RVGEKKFKE  124 (311)
T ss_dssp             --CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHH-----------------------------------HHCHHHHHH
T ss_pred             cccccCccccCCHHHHHHHHHHHHHHHhhccCCCcC-----------------------------------cchhhhhhh
Confidence            553    46689999999999999999999988887                                   76 899999


Q ss_pred             ccCCceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCCCceEEEEeeCCCHHHHHhhcCCCCCchh
Q 038595          451 GLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKDSLKAIDRPLFGDFW  530 (534)
Q Consensus       451 a~~~~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~v~qlyvSlDA~~~e~y~~I~rP~~~~~w  530 (534)
                      +++++|++||+.|||+|||+|.++++.+++.|+.+.|.|||++|+.++.|. +++++||||+++++.|++|+++ .++.|
T Consensus       125 ~~~~~~i~~s~gGEPll~~~l~~li~~~~~~g~~~~l~TNG~~~~~l~~L~-~~~v~isld~~~~~~~~~i~~~-~~~~~  202 (311)
T 2z2u_A          125 ALEPKHVAISLSGEPTLYPYLDELIKIFHKNGFTTFVVSNGILTDVIEKIE-PTQLYISLDAYDLDSYRRICGG-KKEYW  202 (311)
T ss_dssp             HTSCCEEEECSSSCGGGSTTHHHHHHHHHHTTCEEEEEECSCCHHHHHHCC-CSEEEEECCCSSTTTC----CC-CHHHH
T ss_pred             ccCCCEEEEeCCcCccchhhHHHHHHHHHHCCCcEEEECCCCCHHHHHhCC-CCEEEEEeecCCHHHHHHHhCC-ccchH
Confidence            999999999988999999999999999999999999999999999998884 5999999999999999999987 44678


Q ss_pred             hhc
Q 038595          531 ERF  533 (534)
Q Consensus       531 ~~~  533 (534)
                      +++
T Consensus       203 ~~v  205 (311)
T 2z2u_A          203 ESI  205 (311)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}

Probab=100.00  E-value=5.5e-40  Score=333.80  Aligned_cols=201  Identities=40%  Similarity=0.807  Sum_probs=183.8

Q ss_pred             ccHHHHHHhhhcCceEEecccceeeehhhhhhhcCCCccccceeeeccCCeeeeecccc-cccccccccccCCCCCCCCc
Q 038595          298 VTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSL-ACANKCVFCWRHHTNPVGKS  376 (534)
Q Consensus       298 ~~~~~~~~l~~~gy~~~~~h~~vk~c~w~~~~~~~~~~cyk~~fygi~s~~c~~~~p~~-~C~~~C~~C~r~~~~~~~~~  376 (534)
                      +...+|+.|+||||.|+|+||+||+|+||++.|+++|.|||+.||||.+|+|++++|+. .||++|.|||+++..+.+..
T Consensus        20 ~~~~~r~~l~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~i~~~~~gCnl~C~fC~~~~~~~~~~~   99 (342)
T 2yx0_A           20 MPKEVAELFRKQHYEIVGRHSGVKLCHWLKKSLTEGRFCYKQKFYGIHSHRCLQMTPVLAWCTHNCIFCWRPMENFLGTE   99 (342)
T ss_dssp             SCHHHHHHHHHTTCEEEBTTEEECCCTTHHHHHHHCCCCHHHHHHCCCGGGEEEEESCSSCCSBCCTTCCCSSSSCSCSS
T ss_pred             chHHHHHHHhhCCceEeccccceEeccccHhhhcCCCccceeEEeeecCCCeEEEEeChhhhhCcCcccCCCCCCCcccc
Confidence            45788999999999999999999999999999999999999999999999999999995 99999999999877666555


Q ss_pred             ccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCCCCCcccccccHHHhhhccCCce
Q 038595          377 WQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRH  456 (534)
Q Consensus       377 ~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h  456 (534)
                      +.+...+|++|++.+++.+++++++++|+|+                                   |.+++++|+..+++
T Consensus       100 ~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~-----------------------------------v~~~~~~e~~~~~~  144 (342)
T 2yx0_A          100 LPQPWDDPAFIVEESIKAQRKLLIGYKGNPK-----------------------------------VDKKKFEEAWNPTH  144 (342)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHHHHTTCC--CC-----------------------------------SCHHHHHHHTSCCE
T ss_pred             cccCcCCHHHHHHHHHHHHHHHhhccCCCcc-----------------------------------cchhhhhhccCCCE
Confidence            6667789999999999999999998889998                                   99999999999999


Q ss_pred             EEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCC----CceEEEEeeCCCHHHHHhhcCCCCCchhhh
Q 038595          457 CALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKP----VTQLYVSVDAATKDSLKAIDRPLFGDFWER  532 (534)
Q Consensus       457 ~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~----v~qlyvSlDA~~~e~y~~I~rP~~~~~w~~  532 (534)
                      +.|++.|||+|+|+|.++++.+++.|+.+.|.|||++|+.++.|..    +++++||||+++++.|+++++|..+..|++
T Consensus       145 v~~sggGEPll~~~l~~ll~~~~~~g~~i~l~TNG~~~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~~~~~  224 (342)
T 2yx0_A          145 AAISLSGEPMLYPYMGDLVEEFHKRGFTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWER  224 (342)
T ss_dssp             EEECSSSCGGGSTTHHHHHHHHHHTTCEEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHH
T ss_pred             EEEcCCCcccchhhHHHHHHHHHHCCCcEEEEcCCCcHHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCcccHHHH
Confidence            9999999999999999999999999999999999999988888872    799999999999999999999865677877


Q ss_pred             c
Q 038595          533 F  533 (534)
Q Consensus       533 ~  533 (534)
                      +
T Consensus       225 ~  225 (342)
T 2yx0_A          225 I  225 (342)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}

Probab=99.97  E-value=6.9e-32  Score=263.65  Aligned_cols=148  Identities=29%  Similarity=0.435  Sum_probs=138.2

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      +++|+|+|+|||||.+|++|++.| +.|+.+++++++++++++|..++.+||++||||+|+||+|+..|+++|....   
T Consensus        42 kv~IlYgS~tGnte~~A~~La~~l-~~g~~v~v~~l~~~~~~~l~~~~~vI~~tsTyG~Ge~Pdna~~F~~~L~~~~---  117 (219)
T 3hr4_A           42 RVTILFATETGKSEALAWDLGALF-SCAFNPKVVCMDKYRLSCLEEERLLLVVTSTFGNGDCPGNGEKLKKSLFMLK---  117 (219)
T ss_dssp             EEEEEEECSSSHHHHHHHHHHHHH-TTTSEEEEEEGGGCCGGGGGTCSEEEEEEECBTTTBCCGGGHHHHHHHHHCC---
T ss_pred             cEEEEEECCchHHHHHHHHHHHHH-HcCCCeEEEEcccCCHhHhccCCeEEEEEeccCCCcCCHHHHHHHHHHHhcc---
Confidence            599999999999999999999998 5799999999999999999999999999999999999999999999998642   


Q ss_pred             cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhcCC
Q 038595          149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGGD  226 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~~  226 (534)
                          ..|++++|||||+||++|+ +||.+++.++++|+++||++++|++++|+..+ .+.+|+.|.+.|+++|++.+.
T Consensus       118 ----~~l~~~~~aVfGlGdssY~-~F~~a~k~ld~~L~~lGa~~l~~~g~~D~~~~-~e~~~~~W~~~l~~~l~~~~~  189 (219)
T 3hr4_A          118 ----ELNNKFRYAVFGLGSSMYP-RFCAFAHDIDQKLSHLGASQLTPMGEGDELSG-QEDAFRSWAVQTFKAACETFD  189 (219)
T ss_dssp             ----CCSSCCEEEEEEEECTTSS-STTHHHHHHHHHHHHHTCEESSCCEEEETTSC-HHHHHHHHHHHHHHHHHHHTT
T ss_pred             ----hhhcCCEEEEEeCCCcchH-HHhHHHHHHHHHHHHCCCCEeeCCEEEecCCC-cHHHHHHHHHHHHHHHHHHcC
Confidence                3589999999999999996 99999999999999999999999999999764 789999999999999988764

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4

Probab=99.96  E-value=7.9e-29  Score=275.84  Aligned_cols=155  Identities=30%  Similarity=0.483  Sum_probs=137.5

Q ss_pred             CcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhh---
Q 038595           68 NKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDES---  144 (534)
Q Consensus        68 ~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~---  144 (534)
                      .+++|+|||+|||||.+|++|++.|. .|+++++++|+++++.+|..++++||++||||+|+||+|+..|+++|.+.   
T Consensus        12 ~k~~IlY~S~TG~te~~A~~l~~~l~-~~~~~~v~~m~~~d~~~l~~~~~vl~vtsT~G~Gdpp~n~~~F~~~L~~~~~~   90 (688)
T 1tll_A           12 VKATILYATETGKSQAYAKTLCEIFK-HAFDAKAMSMEEYDIVHLEHEALVLVVTSTFGNGDPPENGEKFGCALMEMRHP   90 (688)
T ss_dssp             CEEEEEEECSSSHHHHHHHHHHHHHT-TTSEEEEEETTTSCTTSGGGCSEEEEEECCBTTTBCCGGGHHHHHHHHHHTC-
T ss_pred             CeEEEEEECCchHHHHHHHHHHHHHh-cCCCcEEeecccCChhHhccCceEEEEEcccCCCcCCHHHHHHHHHHHhccCC
Confidence            45999999999999999999999996 78999999999999999988999999999999999999999999999876   


Q ss_pred             -------------------cCccccc-------------ccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCce
Q 038595          145 -------------------ANDFRVG-------------SLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGE  192 (534)
Q Consensus       145 -------------------~~DFRv~-------------~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~r  192 (534)
                                         .+|||++             ...|+|++||||||||++|+ +||.+++.+|++|.+|||+|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~L~~~~~aVfGlGds~Y~-~F~~~~k~ld~~L~~lGa~r  169 (688)
T 1tll_A           91 NSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRAYP-HFCAFGHAVDTLLEELGGER  169 (688)
T ss_dssp             ----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECTTSS-STTHHHHHHHHHHHHTTCEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEeeccCchH-HHHHHHHHHHHHHHHcCCce
Confidence                               3567654             24699999999999999995 99999999999999999999


Q ss_pred             ecceEEeeCCCCCcHHHHHHHHHHHHHHHHhcC
Q 038595          193 VLPVVEGDVDGGELDVVFEDWSKRVVAILKSGG  225 (534)
Q Consensus       193 V~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~  225 (534)
                      ++|++++|+..+ .++.|.+|.++++++|++..
T Consensus       170 l~~~~~~D~~~g-~e~~f~~W~~~~~~~l~~~~  201 (688)
T 1tll_A          170 ILKMREGDELCG-QEEAFRTWAKKVFKAACDVF  201 (688)
T ss_dssp             SSCCEEEETTTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred             eecceeeccCCC-cHHHHHHHHHHHHHHHHHhc
Confidence            999999999764 67899999999999997654

>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1

Probab=99.95  E-value=9.8e-28  Score=228.64  Aligned_cols=146  Identities=23%  Similarity=0.482  Sum_probs=132.9

Q ss_pred             CcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCc
Q 038595           68 NKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESAND  147 (534)
Q Consensus        68 ~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~D  147 (534)
                      .+++|+|+|+||||+++|+.|++.|.+.|+++++++++++. .++..++.+||++||| +|.+|+++..|+++|+...  
T Consensus        22 ~kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~~~~-~~l~~~d~vi~g~~Ty-~G~~p~~~~~fl~~L~~~~--   97 (191)
T 1bvy_F           22 TPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHA-GNLPREGAVLIVTASY-NGHPPDNAKQFVDWLDQAS--   97 (191)
T ss_dssp             CCEEEEEECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGGST-TCCCSSSEEEEEECCB-TTBCCTTTHHHHHHHHTCC--
T ss_pred             CeEEEEEECCChHHHHHHHHHHHHHHhCCCceEEeeHHHhh-hhhhhCCeEEEEEeec-CCCcCHHHHHHHHHHHhcc--
Confidence            35999999999999999999999999999999999999863 4788889999999999 7999999999999997642  


Q ss_pred             ccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHH
Q 038595          148 FRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILK  222 (534)
Q Consensus       148 FRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~  222 (534)
                          ...|+|++|||||+||+.|+++||.+++.++++|+++||+++.|++++|. .++++.+|.+|.+.|++.|.
T Consensus        98 ----~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~~~~~d~-~~d~e~~~~~w~~~l~~~l~  167 (191)
T 1bvy_F           98 ----ADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADA-SDDFEGTYEEWREHMWSDVA  167 (191)
T ss_dssp             ----SSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEEEET-TSCHHHHHHHHHHHHHHHHH
T ss_pred             ----chhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeeccEEEec-CCChHHHHHHHHHHHHHHhc
Confidence                23589999999999999998899999999999999999999999999998 44677779999999999996

>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*

Probab=99.95  E-value=1.4e-27  Score=262.80  Aligned_cols=148  Identities=34%  Similarity=0.567  Sum_probs=136.9

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcC-----CCCeEEEEeccCCCCCCchHHHHHHHHHHh
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLS-----KEALVLIVASSWEDGKPPEAAKFFMNWIDE  143 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~-----~~~lvIfv~STYg~G~pPdna~~Fle~L~e  143 (534)
                      +++|+|+|+|||||.+|++|++.|.+.|+.+.++++++++.+++.     +++++||++||||+|++|+|+..|+++|.+
T Consensus        20 ~i~I~YgS~tGnte~~A~~la~~l~~~g~~~~v~~~~~~~~~~l~~~~~~~~~~vi~~~sT~G~G~~pd~~~~F~~~L~~   99 (618)
T 3qe2_A           20 NIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDFYDWLQE   99 (618)
T ss_dssp             SEEEEEECSSSHHHHHHHHHHHHGGGGTCCEEEECGGGSCGGGGGGGGGSTTCEEEEEEECBGGGBCCGGGHHHHHHHHH
T ss_pred             eEEEEEECChhHHHHHHHHHHHHHHhCCCceEEechHHcCHHHhhhcccccCcEEEEEcCccCCCCCCHHHHHHHHHHhh
Confidence            499999999999999999999999999999999999999988764     367999999999999999999999999987


Q ss_pred             hcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHh
Q 038595          144 SANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKS  223 (534)
Q Consensus       144 ~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~  223 (534)
                      ..       ..|+|++|||||+||++|+ +||.++|.++++|+++||++++|++++|++. +++.+|+.|.+.+|++|.+
T Consensus       100 ~~-------~~l~~~~~avfGlGd~~Y~-~f~~~~k~~d~~L~~lGa~~~~~~g~~D~~~-~~~~~~~~W~~~l~~~l~~  170 (618)
T 3qe2_A          100 TD-------VDLSGVKFAVFGLGNKTYE-HFNAMGKYVDKRLEQLGAQRIFELGLGDDDG-NLEEDFITWREQFWLAVCE  170 (618)
T ss_dssp             CC-------CCCTTCEEEEEEEECTTSS-STTHHHHHHHHHHHHTTCEESSCCEEEETTS-CHHHHHHHHHHHHHHHHHH
T ss_pred             cc-------ccccCCEEEEEeCCCCCcH-hHhHHHHHHHHHHHhCCCCEeecccccccCC-CcHHHHHHHHHHHHHHHHH
Confidence            42       4689999999999999995 9999999999999999999999999999874 5899999999999999987


Q ss_pred             cC
Q 038595          224 GG  225 (534)
Q Consensus       224 ~~  225 (534)
                      ..
T Consensus       171 ~~  172 (618)
T 3qe2_A          171 HF  172 (618)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2

Probab=99.93  E-value=3.8e-26  Score=210.84  Aligned_cols=148  Identities=32%  Similarity=0.508  Sum_probs=133.0

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      +++|+|+|+||||+++|+.|++.|.+.|+.+++++++++++.++.+++.+||++||||.|.+|+++..|+++|....   
T Consensus        11 ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~ii~g~pt~g~G~~p~~~~~f~~~l~~~~---   87 (167)
T 1ykg_A           11 GITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKK---   87 (167)
T ss_dssp             -CEEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGGGGCSEEEEEEECBGGGBCCGGGHHHHHHHTSTT---
T ss_pred             eEEEEEECCchHHHHHHHHHHHHHHHCCCceEEeehhhCCHHHhccCCeEEEEEcccCCCcCChhHHHHHHHHHhcc---
Confidence            58999999999999999999999998899999999999988888889999999999999999999999999997531   


Q ss_pred             cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhcCC
Q 038595          149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGGD  226 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~~  226 (534)
                         ...|++++|+|||+||++| ++||.+++.++++|+++|++++.+.+.+|.   +.++.+.+|.+++++.|....+
T Consensus        88 ---~~~l~~k~~avfg~G~~~y-~~~~~a~~~l~~~l~~~G~~~v~~~~~~d~---~~~~~~~~w~~~l~~~l~~~~~  158 (167)
T 1ykg_A           88 ---APKLENTAFAVFSLGDTSY-EFFCQSGKDFDSKLAELGGERLLDRVDADV---EYQAAASEWRARVVDALKSRAP  158 (167)
T ss_dssp             ---CCCCTTCEEEEEEECCTTS-SSTTHHHHHHHHHHHHHTCEESSCCEEECT---TCHHHHHHHHHHHHHHHHTCC-
T ss_pred             ---ccccCCCEEEEEeecCCCH-HHHHHHHHHHHHHHHHCCCeEeecceecCC---CcHHHHHHHHHHHHHHHHhhcC
Confidence               2358899999999999999 499999999999999999999999999983   2478999999999999976554

>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*

Probab=99.93  E-value=4.9e-26  Score=253.15  Aligned_cols=151  Identities=28%  Similarity=0.426  Sum_probs=139.8

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHh-hCCCceEEECCCCCCccCcCCC-CeEEEEeccCCCCCCchHHHHHHHHHHhhcC
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLT-SNDLLFDLVDPQTYEPEDLSKE-ALVLIVASSWEDGKPPEAAKFFMNWIDESAN  146 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~-~~Gl~v~V~dL~d~d~~dL~~~-~lvIfv~STYg~G~pPdna~~Fle~L~e~~~  146 (534)
                      +++|+|+|+||||+++|++|++.|. +.|+.++++++++++++++..+ +.+||++||||+|++|+++..|+++|.... 
T Consensus        51 ki~IlY~S~tGnte~~A~~ia~~l~~~~g~~v~v~~l~~~~~~~l~~~~~~vi~~~sT~G~G~~p~~~~~F~~~l~~~~-  129 (682)
T 2bpo_A           51 NYLVLYASQTGTAEGFAKAFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIFISTYGEGDFPDGAVNFEDFICNAE-  129 (682)
T ss_dssp             SEEEEEECSSSHHHHHHHHHHHHHHHHHCCCEEEEETTSSCGGGGGGCCSEEEEEEECBTTTBCCSSCHHHHHHHHTCC-
T ss_pred             eEEEEEECCchHHHHHHHHHHHHhHHhcCCceEEeehHHCCHHHHhhcCCeEEEEeCccCCCCCCHHHHHHHHHHHhcc-
Confidence            5999999999999999999999998 8899999999999999999888 999999999999999999999999998642 


Q ss_pred             cccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhcCC
Q 038595          147 DFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGGD  226 (534)
Q Consensus       147 DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~~  226 (534)
                           ...|++++|||||+||++|+ +||.+++.++++|+++||+++.|++++|...++.+++|++|.++|++.|.....
T Consensus       130 -----~~~L~~~~~avfGlGds~Y~-~f~~a~k~l~~~L~~lGa~~l~~~~~~D~~~~~~~~~~~~W~~~l~~~l~~~~~  203 (682)
T 2bpo_A          130 -----AGALSNLRYNMFGLGNSTYE-FFNGAAKKAEKHLSAAGAIRLGKLGEADDGAGTTDEDYMAWKDSILEVLKDELH  203 (682)
T ss_dssp             -----TTSSTTCEEEEEEEECTTSS-STTHHHHHHHHHHHHTTCEECSCCEEEETTTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -----chhccCCEEEEEecCCCCch-hHhHHHHHHHHHHHHCCCeEeECcEEEecCCcccHHHHHHHHHHHHHHHHhhcC
Confidence                 24589999999999999995 999999999999999999999999999987555789999999999999987653

>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*

Probab=99.92  E-value=6e-25  Score=196.91  Aligned_cols=142  Identities=21%  Similarity=0.300  Sum_probs=128.1

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcC-CCCeEEEEeccCCC--CCCchHHHHHHHHHHhhc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLS-KEALVLIVASSWED--GKPPEAAKFFMNWIDESA  145 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~-~~~lvIfv~STYg~--G~pPdna~~Fle~L~e~~  145 (534)
                      +++|+|+|+||||+++|+.|++.|.+.|++++++++.++++.++. +++.+||++|||+.  |.+|+++..|+++|..  
T Consensus         3 ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~--   80 (148)
T 3f6r_A            3 KVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDR--   80 (148)
T ss_dssp             EEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGG--
T ss_pred             eEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhc--
Confidence            589999999999999999999999999999999999999988998 99999999999999  9999999999988764  


Q ss_pred             CcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHH
Q 038595          146 NDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAI  220 (534)
Q Consensus       146 ~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~  220 (534)
                             ..|++++++|||+||+.|+ +||.+++.++++|+++|++++.+...++...++..+.+.+|.++|.+.
T Consensus        81 -------~~l~~k~~~vfg~G~~~y~-~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~  147 (148)
T 3f6r_A           81 -------IGLAGRKVAAFASGDQEYE-HFCGAVPAIEERAKELGATIIAEGLKMEGDASNDPEAVASFAEDVLKQ  147 (148)
T ss_dssp             -------TCCTTCEEEEEEEECTTSS-STTTHHHHHHHHHHHTTCEECSCCEEEESSGGGCHHHHHHHHHHHHHT
T ss_pred             -------cCCCCCEEEEEEeCCCCHH-HHHHHHHHHHHHHHHcCCEEeecceEeecCcchHHHHHHHHHHHHHhh
Confidence                   2588999999999999994 999999999999999999999998888875321457888998888764

>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A

Probab=99.92  E-value=5.7e-26  Score=204.37  Aligned_cols=143  Identities=22%  Similarity=0.300  Sum_probs=127.5

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      +++|+|+|+||||+++|+.|++.|.+.|++++++++.  ++.++.+++.+||++||||.|.+|+++..|+++|....   
T Consensus         3 ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~--~~~~l~~~d~vi~g~pt~g~g~~p~~~~~f~~~l~~~~---   77 (147)
T 2hna_A            3 DITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGP--LLEDLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQK---   77 (147)
T ss_dssp             SEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEECCT--TSCSSCSEEEEEEECCTTTTCCTTSSCHHHHHHHHHHC---
T ss_pred             eEEEEEECCchHHHHHHHHHHHHHHHCCCceEEecCC--CHHHcccCCeEEEEECccCCCCCChhHHHHHHHHHhhc---
Confidence            4899999999999999999999999999999998875  45678888999999999999999999999999997642   


Q ss_pred             cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCC-CCcHHHHHHHHHHHHHHH
Q 038595          149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDG-GELDVVFEDWSKRVVAIL  221 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~-g~~e~~f~eW~~~L~~~L  221 (534)
                          ..|++++|+|||+||+.| ++||.+++.++++|+++|++++.+.+.+|... ++.++.+.+|.+++++.|
T Consensus        78 ----~~l~~~~~avfg~G~~~y-~~~~~a~~~l~~~l~~~G~~~~~~~~~~d~~~~~~~~~~~~~w~~~~~~~l  146 (147)
T 2hna_A           78 ----PDLSAVRFGAIGIGSREY-DTFCGAIDKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWVNLL  146 (147)
T ss_dssp             ----CCTTEEEEEEESCCHHHH-SCSSSCTTHHHHHHHHHTCEECSSCBCCCCSSCCSSCSCCHHHHHHHHHHH
T ss_pred             ----cccCCCEEEEEecccCCH-HHHHHHHHHHHHHHHHcCCeEeeeeEEEecCCCCCcHHHHHHHHHHHHHHh
Confidence                257899999999999999 59999999999999999999999999998763 244678999999999876

>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...

Probab=99.88  E-value=5.6e-23  Score=183.59  Aligned_cols=142  Identities=24%  Similarity=0.291  Sum_probs=126.3

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCC-CCeEEEEeccCCCCC--CchHHHHHHHHHHhhc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-EALVLIVASSWEDGK--PPEAAKFFMNWIDESA  145 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~-~~lvIfv~STYg~G~--pPdna~~Fle~L~e~~  145 (534)
                      +++|+|+|+||||+++|+.|++.|.+.|++++++++++.++.++.+ ++.+||++|||+.|.  +|+++..|+++|..  
T Consensus         2 ki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~~--   79 (147)
T 1f4p_A            2 KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEE--   79 (147)
T ss_dssp             EEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTTTTTCSEEEEEECEECSSSCEECTTTHHHHHTGGG--
T ss_pred             eEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCCHHHhcCcCCEEEEEeCCCCCCCcCCChhHHHHHHHHHh--
Confidence            4899999999999999999999999889999999999998888888 999999999999999  89889999998864  


Q ss_pred             CcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHH
Q 038595          146 NDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAI  220 (534)
Q Consensus       146 ~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~  220 (534)
                             ..|++++++|||+||+.|+ +||.+++.+++.|..+|++++.+...+|...++..+.+.+|.+++++.
T Consensus        80 -------~~l~~k~~~v~~~g~~~~~-~~~~a~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~  146 (147)
T 1f4p_A           80 -------TGAQGRKVACFGCGDSSWE-YFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGA  146 (147)
T ss_dssp             -------SCCTTCEEEEEEEECTTSS-STTHHHHHHHHHHHHTTCEECSCCEEEESCGGGGHHHHHHHHHHHHTT
T ss_pred             -------cccCCCEEEEEeecCCChH-HHHHHHHHHHHHHHHcCCeEhhcccccccCchhHHHHHHHHHHHHHhh
Confidence                   2578999999999999997 599999999999999999999988888865322456899999888653

>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1

Probab=99.86  E-value=3e-22  Score=186.43  Aligned_cols=144  Identities=23%  Similarity=0.358  Sum_probs=124.0

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCc--------hHHHHHHHH
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP--------EAAKFFMNW  140 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pP--------dna~~Fle~  140 (534)
                      +++|+|+|+||||+++|+.|++.|.. ++.++++++++.+++++..++++||++|||+.|.+|        +++..|+++
T Consensus         2 kilI~Y~S~tGnT~~iA~~ia~~l~~-~~~v~~~~~~~~~~~~l~~~d~iilg~pt~~~G~~pg~~~~~~~~~~~~fl~~   80 (179)
T 1yob_A            2 KIGLFFGSNTGKTRKVAKSIKKRFDD-ETMSDALNVNRVSAEDFAQYQFLILGTPTLGEGELPGLSSDAENESWEEFLPK   80 (179)
T ss_dssp             CEEEEECCSSSHHHHHHHHHHTTSCT-TTBCCCEEGGGCCHHHHHTCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHHHH
T ss_pred             eEEEEEECCCcHHHHHHHHHHHHhCC-CCceEEEEhhhCCHHHHhcCCEEEEEeccCCCCcCCcccccccchHHHHHHHH
Confidence            48999999999999999999999976 577888999988888888899999999999999999        889999998


Q ss_pred             HHhhcCcccccccCCCCCeEEEEEecCcc-hHHHHHHHHHHHHHHHHHcCCceecce-------------------EE-e
Q 038595          141 IDESANDFRVGSLLLSNCKFAVFGVGSKS-YEKTFNMVAKDLSKKMRELGAGEVLPV-------------------VE-G  199 (534)
Q Consensus       141 L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~-Y~e~Fc~aAK~LDk~L~kLGA~rV~pl-------------------g~-g  199 (534)
                      |..         ..|+|++++|||+||+. |+++||.+++.++++|.++|++++.+.                   ++ +
T Consensus        81 l~~---------~~l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~f~gl~~  151 (179)
T 1yob_A           81 IEG---------LDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKFVGLAL  151 (179)
T ss_dssp             HTT---------CCCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTCCCSCCTTBSSSSBSSEEE
T ss_pred             hhh---------cccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeeccCCCCcccchhhhcCceecccc
Confidence            853         36889999999999997 987899999999999999999988653                   33 4


Q ss_pred             eCCC--CCcHHHHHHHHHHHHHHHH
Q 038595          200 DVDG--GELDVVFEDWSKRVVAILK  222 (534)
Q Consensus       200 D~~~--g~~e~~f~eW~~~L~~~L~  222 (534)
                      |...  +..+++++.|.+++.+.|.
T Consensus       152 d~~~~~~~~~~~i~~w~~~l~~~~~  176 (179)
T 1yob_A          152 DLDNQSGKTDERVAAWLAQIAPEFG  176 (179)
T ss_dssp             CTTTCGGGHHHHHHHHHHHHGGGGT
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHh
Confidence            5432  2357899999999977653

>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1

Probab=99.86  E-value=1.9e-21  Score=179.84  Aligned_cols=142  Identities=20%  Similarity=0.318  Sum_probs=120.8

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCC-CccCcCCCCeEEEEeccCCCCCC----chHHHHHH-HHHH
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTY-EPEDLSKEALVLIVASSWEDGKP----PEAAKFFM-NWID  142 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~-d~~dL~~~~lvIfv~STYg~G~p----Pdna~~Fl-e~L~  142 (534)
                      +++|+|+|+||||+++|+.|++.|.+.  .++++++++. ++.++.+++++||++|||+.|.+    |+++..|+ ++|.
T Consensus         1 ki~I~Y~S~tGnT~~vA~~ia~~l~~~--~~~~~~~~~~~~~~~l~~~d~ii~g~pt~~~G~~~~~~p~~~~~fl~~~l~   78 (173)
T 2fcr_A            1 KIGIFFSTSTGNTTEVADFIGKTLGAK--ADAPIDVDDVTDPQALKDYDLLFLGAPTWNTGADTERSGTSWDEFLYDKLP   78 (173)
T ss_dssp             CEEEEECCSSSHHHHHHHHHHHHHGGG--BCCCEEGGGCSCGGGGGGCSEEEEEEECCSTTCSSCCSCSTHHHHHHHTGG
T ss_pred             CEEEEEECCCchHHHHHHHHHHHhccC--CcEEEehhhcCChhHHccCCEEEEEEeecCCCCcCccCcHHHHHHHHhhcc
Confidence            489999999999999999999999764  5778888888 77888889999999999999999    88888898 7765


Q ss_pred             hhcCcccccccCCCCCeEEEEEecCcc-hHHHHHHHHHHHHHHHHHcCCceecce-------------------E-EeeC
Q 038595          143 ESANDFRVGSLLLSNCKFAVFGVGSKS-YEKTFNMVAKDLSKKMRELGAGEVLPV-------------------V-EGDV  201 (534)
Q Consensus       143 e~~~DFRv~~~~Lkgl~yAVFGLGDs~-Y~e~Fc~aAK~LDk~L~kLGA~rV~pl-------------------g-~gD~  201 (534)
                      .         ..|+|++++|||+||+. |+++||.+++.++++|.++|++++.+.                   + .+|.
T Consensus        79 ~---------~~l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~  149 (173)
T 2fcr_A           79 E---------VDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDYDYEESKSVRDGKFLGLPLDM  149 (173)
T ss_dssp             G---------CCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGGSCCSCCTTEETTEESSEEEET
T ss_pred             c---------cccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEeecccCCcccccchhhhCCeeeeeeecC
Confidence            3         36889999999999998 888999999999999999999988652                   1 2343


Q ss_pred             C--CCCcHHHHHHHHHHHHHHH
Q 038595          202 D--GGELDVVFEDWSKRVVAIL  221 (534)
Q Consensus       202 ~--~g~~e~~f~eW~~~L~~~L  221 (534)
                      .  .+..+++++.|.+++.+.|
T Consensus       150 ~~~~~~~~~~i~~w~~~i~~~~  171 (173)
T 2fcr_A          150 VNDQIPMEKRVAGWVEAVVSET  171 (173)
T ss_dssp             TTCSSCHHHHHHHHHHHHHHHH
T ss_pred             CCCccccHHHHHHHHHHHHHHh
Confidence            2  2245789999999998876

>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}

Probab=99.85  E-value=2.5e-22  Score=186.88  Aligned_cols=147  Identities=22%  Similarity=0.276  Sum_probs=126.1

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCc--------hHHHHHHHH
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP--------EAAKFFMNW  140 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pP--------dna~~Fle~  140 (534)
                      +++|+|+|+||||+++|+.|++.|... ++++++++++.++.++.+++++||++|||+.|.+|        +++..|+++
T Consensus         3 kilIiY~S~tGnT~~iA~~ia~~l~~~-~~v~~~~~~~~~~~~l~~~d~ii~g~pty~~G~~pg~~~~~~~~~~~~f~~~   81 (182)
T 2wc1_A            3 KIGLFFGSDTGTTRKIAKQIKDMFDDE-VMAKPLNVNRADVADFMAYDFLILGTPTLGDGQLPGLSANAASESWEEFLPR   81 (182)
T ss_dssp             SEEEEECCSSSHHHHHHHHHHTTSCTT-TBCCCEEGGGCCHHHHHHCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHGGG
T ss_pred             EEEEEEECCCchHHHHHHHHHHHhccc-CceEEEEcccCCHHHHhhCCeEEEEEeeCCCCCCCccccccchhHHHHHHHH
Confidence            589999999999999999999999765 77888999988888888899999999999999999        888889887


Q ss_pred             HHhhcCcccccccCCCCCeEEEEEecCcc-hHHHHHHHHHHHHHHHHHcCCceecce-------------------EEe-
Q 038595          141 IDESANDFRVGSLLLSNCKFAVFGVGSKS-YEKTFNMVAKDLSKKMRELGAGEVLPV-------------------VEG-  199 (534)
Q Consensus       141 L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~-Y~e~Fc~aAK~LDk~L~kLGA~rV~pl-------------------g~g-  199 (534)
                      |..         ..|+|++++|||+|++. |+++||.+++.++++|.++|++++.+.                   +++ 
T Consensus        82 l~~---------~~l~gk~~avfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~~~~~~~~~~~gl~~  152 (182)
T 2wc1_A           82 IAD---------QDFSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDRGANVVGRWPAKGYGFEDSLAVVEGEFLGLAL  152 (182)
T ss_dssp             GTT---------CCCTTCEEEEEEECCTTTCTTSTTTHHHHHHHHHHTTTCEEECCEECTTSCCSCCTTEETTEESSEEE
T ss_pred             hhh---------ccCCCCEEEEEEeCCCcccchhHHHHHHHHHHHHHHCCCEEEEeecCCCcCcccchhhhcCceeeeec
Confidence            753         36889999999999997 877899999999999999999988763                   443 


Q ss_pred             eCCC--CCcHHHHHHHHHHHHHHHHhcC
Q 038595          200 DVDG--GELDVVFEDWSKRVVAILKSGG  225 (534)
Q Consensus       200 D~~~--g~~e~~f~eW~~~L~~~L~~~~  225 (534)
                      |..+  +..+++++.|.++|++.|....
T Consensus       153 d~~~~~~~~~~~~~~w~~~l~~~l~~~~  180 (182)
T 2wc1_A          153 DQDNQAALTPERLKGWLSLIAADFGLVL  180 (182)
T ss_dssp             CTTTCGGGHHHHHHHHHHHTHHHHTCCC
T ss_pred             cCCCCccccHHHHHHHHHHHHHHHhccc
Confidence            4332  2257899999999999986554

>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*

Probab=99.84  E-value=6.9e-21  Score=174.05  Aligned_cols=143  Identities=22%  Similarity=0.305  Sum_probs=122.7

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      +++|+|+|+||||+++|+.|++.|... +.++++++.+++++++.+++++||++|||+.|.+|+++..|+++|..     
T Consensus         2 kilIvY~S~tGnT~~vA~~ia~~l~~~-~~v~~~~~~~~~~~~l~~~d~ii~g~pty~~g~~p~~~~~f~~~l~~-----   75 (169)
T 1czn_A            2 KIGLFYGTQTGVTQTIAESIQQEFGGE-SIVDLNDIANADASDLNAYDYLIIGCPTWNVGELQSDWEGIYDDLDS-----   75 (169)
T ss_dssp             CEEEEECCSSSHHHHHHHHHHHHHTST-TTEEEEEGGGCCGGGGGGCSEEEEECCEETTTEECHHHHHHGGGGGG-----
T ss_pred             eEEEEEECCCcHHHHHHHHHHHHhCcc-cceEEEEhhhCCHhHHhhCCEEEEEecccCCCcCCHHHHHHHHHhhh-----
Confidence            489999999999999999999999866 78999999999888898999999999999999999999999988753     


Q ss_pred             cccccCCCCCeEEEEEecCcc-hHHHHHHHHHHHHHHHHHcCCceecce-------------------EE-eeCC--CCC
Q 038595          149 RVGSLLLSNCKFAVFGVGSKS-YEKTFNMVAKDLSKKMRELGAGEVLPV-------------------VE-GDVD--GGE  205 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~-Y~e~Fc~aAK~LDk~L~kLGA~rV~pl-------------------g~-gD~~--~g~  205 (534)
                          ..|+|+++++||+|++. |+++||.+.+.+++.|.++|++.+...                   ++ +|..  ++.
T Consensus        76 ----~~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~gl~~~~~~~~~~  151 (169)
T 1czn_A           76 ----VNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRNNQFVGLAIDEDNQPDL  151 (169)
T ss_dssp             ----SCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTTTCGGG
T ss_pred             ----hccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcceecchheeCCeeeeeeecCCCcccc
Confidence                36889999999999995 987899999999999999999887631                   21 3432  223


Q ss_pred             cHHHHHHHHHHHHHHH
Q 038595          206 LDVVFEDWSKRVVAIL  221 (534)
Q Consensus       206 ~e~~f~eW~~~L~~~L  221 (534)
                      .++++++|.+++.+.|
T Consensus       152 ~~~~~~~w~~~~~~~~  167 (169)
T 1czn_A          152 TKNRIKTWVSQLKSEF  167 (169)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            5788999999998876

>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*

Probab=99.83  E-value=1.2e-21  Score=179.04  Aligned_cols=138  Identities=19%  Similarity=0.280  Sum_probs=115.7

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      +++|+|+|+||||+++|+.|++.|   |. +++++++++++.++.+++.+||++|||+.|.+|+++..|+++|..     
T Consensus         3 k~~I~Y~S~tGnT~~~A~~ia~~l---g~-~~~~~~~~~~~~~l~~~d~ii~g~pt~~~g~~p~~~~~f~~~l~~-----   73 (164)
T 2bmv_A            3 KIGIFFGTDSGNAEAIAEKISKAI---GN-AEVVDVAKASKEQFNSFTKVILVAPTAGAGDLQTDWEDFLGTLEA-----   73 (164)
T ss_dssp             CEEEEECCSSSHHHHHHHHHHHHH---CS-EEEEEGGGCCHHHHTTCSEEEEEEEEETTTEECHHHHHHHTTCCT-----
T ss_pred             eEEEEEECCCchHHHHHHHHHHHc---CC-cEEEecccCCHhHHhhCCEEEEEECCcCCCcCcHHHHHHHHHHhh-----
Confidence            489999999999999999999999   55 899999998888888999999999999999999999999887753     


Q ss_pred             cccccCCCCCeEEEEEecCcc-hHHHHHHHHHHHHHHHHHcCCceecce--------------------EEeeCCC--CC
Q 038595          149 RVGSLLLSNCKFAVFGVGSKS-YEKTFNMVAKDLSKKMRELGAGEVLPV--------------------VEGDVDG--GE  205 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~-Y~e~Fc~aAK~LDk~L~kLGA~rV~pl--------------------g~gD~~~--g~  205 (534)
                          ..|++++|+|||+||+. |+.+||.+++.++++|.+  ++++.+.                    ...|...  +.
T Consensus        74 ----~~l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~--~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~~~~~~  147 (164)
T 2bmv_A           74 ----SDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTSTDGYHFEASKAVEGGKFVGLVIDEDNQDDL  147 (164)
T ss_dssp             ----HHHHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--SEECCCEESTTCCCSCCTTEETTEESSEEECTTTCGGG
T ss_pred             ----hhcCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--CEEEccccCCCccccchhhhhcCcccCccCCCCCcccc
Confidence                24788999999999995 976799999999999988  7777653                    3344332  12


Q ss_pred             cHHHHHHHHHHHHHHH
Q 038595          206 LDVVFEDWSKRVVAIL  221 (534)
Q Consensus       206 ~e~~f~eW~~~L~~~L  221 (534)
                      .++++++|.+++.+.|
T Consensus       148 ~~~~~~~w~~~l~~~l  163 (164)
T 2bmv_A          148 TDERISKWVEQVKGSF  163 (164)
T ss_dssp             HHHHHHHHHHHHTTTC
T ss_pred             CHHHHHHHHHHHHHhh
Confidence            4788999999886543

>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*

Probab=99.83  E-value=2.1e-20  Score=170.77  Aligned_cols=142  Identities=20%  Similarity=0.252  Sum_probs=121.6

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      +++|+|+|+||||+++|+.|++.|.+.  .++++++++++++++.+++++||++|||+.|.+|+++..|+++|..     
T Consensus         3 kilIiY~S~tGnT~~vA~~ia~~l~~~--~v~~~~~~~~~~~~l~~~d~ii~g~p~y~~g~~p~~~~~fl~~l~~-----   75 (169)
T 1obo_A            3 KIGLFYGTQTGKTESVAEIIRDEFGND--VVTLHDVSQAEVTDLNDYQYLIIGCPTLNIGELQSDWEGLYSELDD-----   75 (169)
T ss_dssp             SEEEEECCSSSHHHHHHHHHHHHHCTT--TEEEEETTTCCGGGGGGCSEEEEEEEEETTTEECHHHHHHHTTGGG-----
T ss_pred             eEEEEEECCCchHHHHHHHHHHHhCcC--CcEEEEcccCCHHHHhhCCEEEEEEeeCCCCcCCHHHHHHHHHhhh-----
Confidence            599999999999999999999999765  7899999999888898999999999999999999989889988754     


Q ss_pred             cccccCCCCCeEEEEEecCc-chHHHHHHHHHHHHHHHHHcCCceecce-------------------EE-eeCC--CCC
Q 038595          149 RVGSLLLSNCKFAVFGVGSK-SYEKTFNMVAKDLSKKMRELGAGEVLPV-------------------VE-GDVD--GGE  205 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs-~Y~e~Fc~aAK~LDk~L~kLGA~rV~pl-------------------g~-gD~~--~g~  205 (534)
                          ..|+|++++|||+|++ .|+++||.+.+.+++.|.++|++.+.+.                   +. .+..  ++.
T Consensus        76 ----~~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~~~~~~  151 (169)
T 1obo_A           76 ----VDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDNQSDL  151 (169)
T ss_dssp             ----CCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTTTCGGG
T ss_pred             ----cCcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeecCCCcccccchhhcCCceeeEEeeCCCcccc
Confidence                3678999999999998 5877899999999999999999888652                   11 2322  223


Q ss_pred             cHHHHHHHHHHHHHHH
Q 038595          206 LDVVFEDWSKRVVAIL  221 (534)
Q Consensus       206 ~e~~f~eW~~~L~~~L  221 (534)
                      .+++++.|.+++.+.|
T Consensus       152 ~~~~~~~w~~~~~~~l  167 (169)
T 1obo_A          152 TDDRIKSWVAQLKSEF  167 (169)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            5678999999998877

>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*

Probab=99.83  E-value=4.4e-21  Score=177.94  Aligned_cols=144  Identities=23%  Similarity=0.285  Sum_probs=121.8

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      +++|+|+|+||||+++|+.|++.|...  .++++++++.++.++.+++++||++|||+.|.+|+++..|+++|..     
T Consensus         2 ki~IvY~S~tGnT~~iA~~Ia~~l~~~--~v~i~~~~~~~~~~l~~~d~ii~g~pt~~~G~~p~~~~~f~~~l~~-----   74 (175)
T 1ag9_A            2 ITGIFFGSDTGNTENIAKMIQKQLGKD--VADVHDIAKSSKEDLEAYDILLLGIPTWYYGEAQCDWDDFFPTLEE-----   74 (175)
T ss_dssp             CEEEEECCSSSHHHHHHHHHHHHHCTT--TEEEEEGGGCCHHHHHTCSEEEEECCEETTTEECHHHHHHHHHHTT-----
T ss_pred             EEEEEEECCCchHHHHHHHHHHHhccC--ceEEEEcccCChhHhhhCCEEEEEEeecCCCcChHHHHHHHhhhhh-----
Confidence            489999999999999999999999764  5889999888777888899999999999999999999999999863     


Q ss_pred             cccccCCCCCeEEEEEecCcc-hHHHHHHHHHHHHHHHHHcCCceecce--------------------EE-eeCCC--C
Q 038595          149 RVGSLLLSNCKFAVFGVGSKS-YEKTFNMVAKDLSKKMRELGAGEVLPV--------------------VE-GDVDG--G  204 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~-Y~e~Fc~aAK~LDk~L~kLGA~rV~pl--------------------g~-gD~~~--g  204 (534)
                          ..|+|++++|||+||+. |+++||.+.+.+++.|.++|++++...                    +. .|...  +
T Consensus        75 ----~~l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~s~~~~~~~~~~gl~~~~~~~~~  150 (175)
T 1ag9_A           75 ----IDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPE  150 (175)
T ss_dssp             ----CCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTTCCCSCCSCEEETTEESSEEECTTTCHH
T ss_pred             ----cccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcccccchheeeCCeEEeeecCCCCccc
Confidence                36889999999999985 888999999999999999999887642                    11 33221  1


Q ss_pred             CcHHHHHHHHHHHHHHHHh
Q 038595          205 ELDVVFEDWSKRVVAILKS  223 (534)
Q Consensus       205 ~~e~~f~eW~~~L~~~L~~  223 (534)
                      ..+++++.|.++|.+.|..
T Consensus       151 ~~~~~i~~w~~~i~~~~~~  169 (175)
T 1ag9_A          151 LTAERVEKWVKQISEELHL  169 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHTH
T ss_pred             ccHHHHHHHHHHHHHHhhh
Confidence            2467899999999988754

>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*

Probab=99.82  E-value=9.9e-20  Score=161.16  Aligned_cols=134  Identities=16%  Similarity=0.190  Sum_probs=115.2

Q ss_pred             EEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCch-HHHHHHHHHHhhcCcc
Q 038595           70 GKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPE-AAKFFMNWIDESANDF  148 (534)
Q Consensus        70 VlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPd-na~~Fle~L~e~~~DF  148 (534)
                      |+|+|+|+||||+++|+.|++.|.+.|++++++++.+.++.++.+++.+||++|||+.|.+|+ ++..|+++|..     
T Consensus         1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~-----   75 (138)
T 5nul_A            1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAMTDEVLEESEFEPFIEEIST-----   75 (138)
T ss_dssp             CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGG-----
T ss_pred             CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCCHHHHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHh-----
Confidence            579999999999999999999999999999999999999888999999999999999998886 89999998853     


Q ss_pred             cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHH
Q 038595          149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVV  218 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~  218 (534)
                           .|+++++++||+++..|    |.+.+.++++|+++|++++.+...++...+ +. +.+.+|.++|.
T Consensus        76 -----~l~~k~~~~f~t~g~~~----~~a~~~l~~~l~~~G~~~v~~~~~~~~~p~~~d-~~~~~~~~~l~  136 (138)
T 5nul_A           76 -----KISGKKVALFGSYGWGD----GKWMRDFEERMNGYGCVVVETPLIVQNEPDEAE-QDCIEFGKKIA  136 (138)
T ss_dssp             -----GCTTCEEEEEEEESSSC----SHHHHHHHHHHHHTTCEECSCCEEEESSCGGGH-HHHHHHHHHHH
T ss_pred             -----hcCCCEEEEEEecCCCC----ChHHHHHHHHHHHCCCEEECCceEEecCCCHHH-HHHHHHHHHHh
Confidence                 17899999999875543    688999999999999999988777776532 23 56666766654

>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1

Probab=99.75  E-value=1e-17  Score=146.57  Aligned_cols=134  Identities=11%  Similarity=0.134  Sum_probs=113.6

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCch-HHHHHHHHHHhhcCc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPE-AAKFFMNWIDESAND  147 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPd-na~~Fle~L~e~~~D  147 (534)
                      +++|+|+|.||||+++|+.|++.+.+.|++++++++.+.+++++.+++.+||++|||+.|.+|+ ++..|+++|..    
T Consensus         1 ~i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~----   76 (137)
T 2fz5_A            1 MVEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPAMGSEELEDSVVEPFFTDLAP----   76 (137)
T ss_dssp             CEEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG----
T ss_pred             CEEEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh----
Confidence            3799999999999999999999999999999999999998888888999999999999998888 49999999852    


Q ss_pred             ccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHH
Q 038595          148 FRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVV  218 (534)
Q Consensus       148 FRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~  218 (534)
                            .|+|+++++||.+..    .||.+.+.++++|..+|++.+ +...++...++ .+.+.+|.+++.
T Consensus        77 ------~l~~k~~~~~~t~g~----~~~~~~~~l~~~l~~~g~~~~-~~~~~~g~~~~-~~~~~~~~~~l~  135 (137)
T 2fz5_A           77 ------KLKGKKVGLFGSYGW----GSGEWMDAWKQRTEDTGATVI-GTAIVNEMPDN-APECKELGEAAA  135 (137)
T ss_dssp             ------GCSSCEEEEEEEESS----CCSHHHHHHHHHHHHTTCEEE-EEEEEESSSSS-CTHHHHHHHHHH
T ss_pred             ------hcCCCEEEEEEecCC----CCchHHHHHHHHHHHCCCEEc-CcEEEeeCCCh-HHHHHHHHHHHh
Confidence                  478999999997322    267899999999999999988 65666554333 467888887765

>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A

Probab=99.70  E-value=2.8e-17  Score=151.33  Aligned_cols=140  Identities=17%  Similarity=0.161  Sum_probs=114.7

Q ss_pred             CcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCC-CccCc----CCCCeEEEEeccCCCCCCchHHHHHHHHHH
Q 038595           68 NKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTY-EPEDL----SKEALVLIVASSWEDGKPPEAAKFFMNWID  142 (534)
Q Consensus        68 ~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~-d~~dL----~~~~lvIfv~STYg~G~pPdna~~Fle~L~  142 (534)
                      .+++|+|+|+||||+++|+.|++.|.+.|++++++|+.+. +++++    .+++.+||++|||+ |.+| . ..|+..|.
T Consensus         5 ~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~-g~~p-~-~~~l~~l~   81 (159)
T 3fni_A            5 TSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIGMSPAA-SAAS-I-QGALSTIL   81 (159)
T ss_dssp             CEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEECCBTT-SHHH-H-HHHHHHHH
T ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEEcCcCC-CCcc-H-HHHHHHHH
Confidence            4699999999999999999999999999999999999998 76653    45889999999998 7777 3 78888876


Q ss_pred             hhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHHHHH
Q 038595          143 ESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVVAIL  221 (534)
Q Consensus       143 e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~~~L  221 (534)
                      ..         .++++.+++||++  .|   +|.+.+.+.+.|.++|++.+.+...+....+ +..+.+.+|.+.|.+.+
T Consensus        82 ~~---------~~~~k~va~fgs~--g~---~~~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~~  147 (159)
T 3fni_A           82 GS---------VNEKQAVGIFETG--GG---DDEPIDPLLSKFRNLGLTTAFPAIRIKQTPTENTYKLCEEAGTDLGQWV  147 (159)
T ss_dssp             HH---------CCTTSEEEEECCS--SS---CBCCHHHHHHHHHHTTCEESSSCBCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hh---------cccCCEEEEEEcC--CC---CcHHHHHHHHHHHHCCCEEecCceEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence            53         4689999999975  33   3778999999999999999987766655432 23456778999998887


Q ss_pred             Hhc
Q 038595          222 KSG  224 (534)
Q Consensus       222 ~~~  224 (534)
                      ...
T Consensus       148 ~~~  150 (159)
T 3fni_A          148 TRD  150 (159)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}

Probab=99.69  E-value=3.6e-17  Score=150.38  Aligned_cols=141  Identities=13%  Similarity=0.130  Sum_probs=114.9

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCc----CCCCeEEEEeccCCCCCCchHHHHHHHHHHhh
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDL----SKEALVLIVASSWEDGKPPEAAKFFMNWIDES  144 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL----~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~  144 (534)
                      +++|+|+|+||||+++|+.|++.|.+.|++++++|+.+.+++++    .+++.+||++|||+ |.+|.  ..|++.|...
T Consensus         2 kv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~-g~~p~--~~fl~~l~~~   78 (161)
T 3hly_A            2 SVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLGTPPSQ-PSEAV--ATALSTIFAA   78 (161)
T ss_dssp             CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEECCBSS-CCHHH--HHHHHHHHHH
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEEEcCCcC-CchhH--HHHHHHHHhh
Confidence            48999999999999999999999999999999999999887765    36899999999997 77775  7788887643


Q ss_pred             cCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHHHHHHh
Q 038595          145 ANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVVAILKS  223 (534)
Q Consensus       145 ~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~~~L~~  223 (534)
                               .++|+.+++||++.  |   +|.+.+.+++.|+++|++.+.+...+....+ +..+.+.+|.+.|...|..
T Consensus        79 ---------~l~gk~v~~fgs~g--~---~g~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~l~~  144 (161)
T 3hly_A           79 ---------AHNKQAIGLFDSYG--G---DDEPIDALLAQFRNLGLHTAFPPIRVKDQPTEAIYQQCEESGTDLGQWLTR  144 (161)
T ss_dssp             ---------CCTTSEEEEECCCC--S---SBCCHHHHHHHHHHTTCEESSSCBCCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------hhCCCEEEEEEcCC--C---CcHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHHh
Confidence                     47899999999743  3   3788999999999999999977655544322 2235677899999988876


Q ss_pred             cCC
Q 038595          224 GGD  226 (534)
Q Consensus       224 ~~~  226 (534)
                      ...
T Consensus       145 ~~~  147 (161)
T 3hly_A          145 ADA  147 (161)
T ss_dssp             CC-
T ss_pred             hhH
Confidence            543

>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*

Probab=99.69  E-value=5.4e-17  Score=141.98  Aligned_cols=116  Identities=16%  Similarity=0.195  Sum_probs=87.1

Q ss_pred             EEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCccc
Q 038595           70 GKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFR  149 (534)
Q Consensus        70 VlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFR  149 (534)
                      ++|+|+|+||||+++|+.|+  +.  |  +   ++++   +++ .++.+||++|||+.|.+|+++..|++.         
T Consensus         1 ~~I~Y~S~tGnT~~~A~~ia--~~--~--~---~i~~---~~~-~~~~ii~g~pt~~~g~~p~~~~~fl~~---------   58 (119)
T 2xod_A            1 MLVAYDSMTGNVKRFIHKLN--MP--A--V---QIGE---DLV-IDEDFILITYTTGFGNVPERVLEFLER---------   58 (119)
T ss_dssp             CEEEECCSSSHHHHHHHHHT--SC--E--E---ECCT---TCC-CCSCEEEEECCBTTTBCCHHHHHHHHH---------
T ss_pred             CEEEEECCChhHHHHHHHhc--cc--C--C---CcCc---ccc-cCCCEEEEEeecCCCcCCHHHHHHHHH---------
Confidence            47999999999999999999  33  3  2   2332   334 488999999999999999999998754         


Q ss_pred             ccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHH
Q 038595          150 VGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVV  218 (534)
Q Consensus       150 v~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~  218 (534)
                           ++++.|+|||+||+.|++.||.+++.++++|.   ...   ...++.... +..+.+.+|.++++
T Consensus        59 -----~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~---~~~---~~~~~~~~~~~d~~~~~~~~~~i~  117 (119)
T 2xod_A           59 -----NNEKLKGVSASGNRNWGDMFGASADKISAKYE---VPI---VSKFELSGTNNDVEYFKERVREIA  117 (119)
T ss_dssp             -----HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHT---CCE---EEEEETTCCHHHHHHHHHHHHHHT
T ss_pred             -----cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhC---Ccc---EEEEecCCCHHHHHHHHHHHHHhc
Confidence                 35689999999999998779999999999864   322   223333321 12356788987764

>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7

Probab=99.61  E-value=3.3e-16  Score=142.65  Aligned_cols=119  Identities=16%  Similarity=0.203  Sum_probs=87.8

Q ss_pred             EEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCccc
Q 038595           70 GKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFR  149 (534)
Q Consensus        70 VlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFR  149 (534)
                      +.|+|+|+||||+++|++|+..+        .+++.+    .+...+.+||++||||.|.+|+.+..|++.   .     
T Consensus        11 i~I~Y~S~TGNt~~vA~~l~~~~--------~~~i~~----~~~~~~~~ilv~pTyG~G~~P~~v~~Fl~~---~-----   70 (139)
T 1rlj_A           11 VQIIFDSKTGNVQRFVNKTGFQQ--------IRKVDE----MDHVDTPFVLVTYTTNFGQVPASTQSFLEK---Y-----   70 (139)
T ss_dssp             CEEEECCSSSHHHHHHTTSCCSE--------EEETTS----CSCCCSCEEEEECCBGGGBCCHHHHHHHHH---H-----
T ss_pred             EEEEEECCChhHHHHHHHhcccc--------ceEecc----ccccCCCEEEEEcCcCCCcCcHHHHHHHHh---C-----
Confidence            78999999999999999997421        234433    355567899999999999999998888742   1     


Q ss_pred             ccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCC-CCcHHHHHHHHHHHHHH
Q 038595          150 VGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDG-GELDVVFEDWSKRVVAI  220 (534)
Q Consensus       150 v~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~-g~~e~~f~eW~~~L~~~  220 (534)
                            ++..|||+|+||++|++.||.+++.+++.+   |...+   ...+... ....+.+.+|.++++..
T Consensus        71 ------~~~~~~V~g~Gd~~yg~~f~~a~~~i~~~~---~~~~~---~~~el~g~~~D~~~~~~~~~~~~~~  130 (139)
T 1rlj_A           71 ------AHLLLGVAASGNKVWGDNFAKSADTISRQY---QVPIL---HKFELSGTSKDVELFTQEVERVVTK  130 (139)
T ss_dssp             ------GGGEEEEEEEECGGGGGGTTHHHHHHHHHH---TCCEE---EEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred             ------CCCEEEEEecCCCcHHHHHHHHHHHHHHHc---CCCCc---ceEEEcCCHHHHHHHHHHHHHHHHH
Confidence                  246899999999999889999999998775   54332   2333221 11246688898888754

>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*

Probab=99.46  E-value=1.8e-13  Score=127.22  Aligned_cols=122  Identities=12%  Similarity=0.163  Sum_probs=86.6

Q ss_pred             EEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCC----CCCCchHHHHHHHHHHhhc
Q 038595           70 GKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWE----DGKPPEAAKFFMNWIDESA  145 (534)
Q Consensus        70 VlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg----~G~pPdna~~Fle~L~e~~  145 (534)
                      .+|+|+|.||||+++|++|..       +..-+++.+  .+++...+.+|+++|||+    .|..|+.+..|++.+.+  
T Consensus        23 ~ivYfsS~TGNT~rFv~kL~~-------~~~~I~~~~--~~~~~~~ep~vlv~PTYg~g~~~G~vP~~v~dFl~~~~n--   91 (153)
T 3n3a_C           23 QLVYFSSSSENTQRFIERLGL-------PAVRIPLNE--RERIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEHN--   91 (153)
T ss_dssp             CEEECCCTTCHHHHHHHHHCS-------CCEECCSST--TCCCCCCSCEEEEEECCTTSSSSSSSCHHHHHHHTSHHH--
T ss_pred             eEEEEECCCcCHHHHHHHhCC-------ccccccccc--CcccccCCCEEEEEeccCCCCcCCcCcHHHHHHHhhhcc--
Confidence            478899999999999999843       222234432  233455678999999999    58999988888765532  


Q ss_pred             CcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecce-EEeeCCCC-CcHHHHHHHHHHHHH
Q 038595          146 NDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPV-VEGDVDGG-ELDVVFEDWSKRVVA  219 (534)
Q Consensus       146 ~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~pl-g~gD~~~g-~~e~~f~eW~~~L~~  219 (534)
                                +++.++|+|+||++|++.||.+++.+.+.+.   .    |. .+.+-... +.-+.+.+|.+++|+
T Consensus        92 ----------~~~~~gVigsGN~nfg~~Fc~A~d~ia~k~~---v----P~l~kfEL~Gt~eDv~~v~~~~~~~~~  150 (153)
T 3n3a_C           92 ----------RALLRGVIASGNRNFGEAYGRAGDVIARKCG---V----PWLYRFELMGTQSDIENVRKGVTEFWQ  150 (153)
T ss_dssp             ----------HHHEEEEEEEECGGGGGGTTHHHHHHHHHHT---C----CEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred             ----------cCcEEEEEecCCCchhHHHHHHHHHHHHHhC---C----CeEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence                      2457999999999999999999999998875   2    33 45554321 112445566666554

>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3

Probab=99.45  E-value=4.8e-13  Score=136.71  Aligned_cols=141  Identities=15%  Similarity=0.118  Sum_probs=115.7

Q ss_pred             CcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCc----CCCCeEEEEeccCCCCCCchHHHHHHHHHHh
Q 038595           68 NKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDL----SKEALVLIVASSWEDGKPPEAAKFFMNWIDE  143 (534)
Q Consensus        68 ~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL----~~~~lvIfv~STYg~G~pPdna~~Fle~L~e  143 (534)
                      .+++|+|+|+||||+++|+.|++.+.+.|+.++++++.+.+..++    .+++.+||++|||+.+.+| .+..|+++|..
T Consensus       253 ~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gsp~~~~~~~~-~~~~~l~~l~~  331 (402)
T 1e5d_A          253 NKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHNNGILP-YVAGTLQYIKG  331 (402)
T ss_dssp             SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCCBTTBCCH-HHHHHHHHHHH
T ss_pred             CcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccCCCchH-HHHHHHHHhhh
Confidence            369999999999999999999999999999999999998876653    6789999999999977766 58899998864


Q ss_pred             hcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHHHHHH
Q 038595          144 SANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVVAILK  222 (534)
Q Consensus       144 ~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~~~L~  222 (534)
                      .         .++|+.+++||.    |+ +||.+.+.+.+.|..+|++.+.+...++.... +..+.+.+|.+++...++
T Consensus       332 ~---------~l~~k~~~~f~t----~g-~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~  397 (402)
T 1e5d_A          332 L---------RPQNKIGGAFGS----FG-WSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQLKTMAQTIARALK  397 (402)
T ss_dssp             T---------CCCSCEEEEEEE----ES-SSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             c---------ccCCCEEEEEEc----CC-CccHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHh
Confidence            2         478999999997    33 45889999999999999999876556654322 234567788888887775


Q ss_pred             h
Q 038595          223 S  223 (534)
Q Consensus       223 ~  223 (534)
                      .
T Consensus       398 ~  398 (402)
T 1e5d_A          398 A  398 (402)
T ss_dssp             H
T ss_pred             h
Confidence            3

>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*

Probab=99.45  E-value=1.7e-13  Score=139.77  Aligned_cols=139  Identities=12%  Similarity=0.034  Sum_probs=112.6

Q ss_pred             CcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCc----CCCCeEEEEeccCCCCCCchHHHHHHHHHHh
Q 038595           68 NKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDL----SKEALVLIVASSWEDGKPPEAAKFFMNWIDE  143 (534)
Q Consensus        68 ~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL----~~~~lvIfv~STYg~G~pPdna~~Fle~L~e  143 (534)
                      .+++|+|+|+||||+++|+.+++.|.+.|++++++++.+.+..++    .+++.+||++|||+.|.+|. +..|+++|..
T Consensus       252 ~~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~g~p~y~~~~~~~-~~~~l~~l~~  330 (398)
T 1ycg_A          252 AKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTINNDILPV-VSPLLDDLVG  330 (398)
T ss_dssp             SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEEECCCBTTBCCGG-GHHHHHHHHH
T ss_pred             CeEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccCccchHH-HHHHHHHHhc
Confidence            469999999999999999999999999999999999988776553    57899999999999888775 8899999864


Q ss_pred             hcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecce-EEeeCCCC-CcHHHHHHHHHHHHHHH
Q 038595          144 SANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPV-VEGDVDGG-ELDVVFEDWSKRVVAIL  221 (534)
Q Consensus       144 ~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~pl-g~gD~~~g-~~e~~f~eW~~~L~~~L  221 (534)
                      .         .++|+.+++||.    |+ +||.+.+.+++.|..+|++.+.+. ..++.... +..+.+.+|.+++...+
T Consensus       331 ~---------~~~~k~~~~~~s----~g-~~~~a~~~l~~~l~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~  396 (398)
T 1ycg_A          331 L---------RPKNKVGLAFGA----YG-WGGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRCYELGRKIAARI  396 (398)
T ss_dssp             H---------CCSSCEEEEEEE----ES-SSCCHHHHHHHHHHHTTCEESCSSCCEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred             c---------ccCCCEEEEEEe----CC-CchHHHHHHHHHHHHCCeEEecCceEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence            3         478999999997    33 468899999999999999998765 45554322 23355667777776655

>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*

Probab=99.42  E-value=1e-12  Score=138.44  Aligned_cols=138  Identities=14%  Similarity=0.083  Sum_probs=103.9

Q ss_pred             CCcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCC---cc----CcCCCCeEEEEeccCCCCCCchHHHHHHH
Q 038595           67 PNKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYE---PE----DLSKEALVLIVASSWEDGKPPEAAKFFMN  139 (534)
Q Consensus        67 ~~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d---~~----dL~~~~lvIfv~STYg~G~pPdna~~Fle  139 (534)
                      .++|+|+|+|++|||+++|+.|++.|.+.|+++.++++.+.+   .+    ++.+++.+||++|||+.+.+| .+..|+.
T Consensus       265 ~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~~~~~~p-~~~~~l~  343 (410)
T 4dik_A          265 KGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYEAEIHP-LMRFTLL  343 (410)
T ss_dssp             TTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCTTSSSCH-HHHHHHH
T ss_pred             ccceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCcCCcCCH-HHHHHHH
Confidence            346999999999999999999999999999988766554443   33    356789999999999966555 5888988


Q ss_pred             HHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHH
Q 038595          140 WIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVA  219 (534)
Q Consensus       140 ~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~  219 (534)
                      .|...         .++|+.+|+||++  .|+   +.+.+.+.++|+++|++.+.|.. .-....+ ++.+++-.+.+.+
T Consensus       344 ~l~~~---------~~~~K~~~~FGSy--GWs---g~a~~~~~~~l~~~~~~~v~~~~-~~~~~~d-e~~lee~~~~~~~  407 (410)
T 4dik_A          344 EIIDK---------ANYEKPVLVFGVH--GWA---PSAERTAGELLKETKFRILSFTE-IKGSNMD-ERKIEEAISLLKK  407 (410)
T ss_dssp             HHHHH---------CCCCCEEEEEEEC--CCC---CTTSCCHHHHHTTSSCEEEEEEE-ECSTTCC-HHHHHHHHHHHHH
T ss_pred             HHHhc---------ccCCCEEEEEECC--CCC---cHHHHHHHHHHHHCCCEEECcEE-EECCCCC-HHHHHHHHHHHHH
Confidence            88754         5689999999973  465   78899999999999998765543 3322222 4556665544444


Q ss_pred             HH
Q 038595          220 IL  221 (534)
Q Consensus       220 ~L  221 (534)
                      .|
T Consensus       408 ~l  409 (410)
T 4dik_A          408 EL  409 (410)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*

Probab=99.42  E-value=2.3e-13  Score=128.63  Aligned_cols=70  Identities=17%  Similarity=0.142  Sum_probs=61.6

Q ss_pred             CceEEEeecCCCCCCcc-HHHHHHHHHhcCCcEEEEcCCCC---HHHHhhcCC-CceEEEEeeCCCHHHHHhhcCC
Q 038595          454 PRHCALSLVGEPIMYPE-INTLVDELHRRRISTFLVTNAQF---PDKIKLLKP-VTQLYVSVDAATKDSLKAIDRP  524 (534)
Q Consensus       454 ~~h~alSl~GEPlLyp~-L~elI~~lk~~gi~~~LvTNGtl---pe~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP  524 (534)
                      +..+.|++ |||+|+|+ |.++++++++.|+.+.+.|||++   ++.+++|.+ ++.+.||||+.+++.|+++++.
T Consensus        70 ~~~i~~~G-GEP~l~~~~l~~l~~~~~~~~~~i~i~Tng~~~~~~~~~~~l~~~~~~v~isld~~~~~~~~~~~~~  144 (245)
T 3c8f_A           70 GGGVTASG-GEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGV  144 (245)
T ss_dssp             TCEEEEEE-SCGGGGHHHHHHHHHHHHTTTCCEEEEECCCCCCCCHHHHHHHHTCSEEEEECCCSSHHHHHHHHSS
T ss_pred             CCeEEEEC-CCcCCCHHHHHHHHHHHHHcCCcEEEEeCCCcCcCHHHHHHHHHhCCEEEEeCCCCCHHHhhhccCC
Confidence            35678888 99999998 79999999999999999999985   677777665 7899999999999999999874

>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*

Probab=99.41  E-value=1.2e-12  Score=121.45  Aligned_cols=121  Identities=12%  Similarity=0.033  Sum_probs=98.3

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCC-------------------CccCcCCCCeEEEEeccCCCCC
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTY-------------------EPEDLSKEALVLIVASSWEDGK  129 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~-------------------d~~dL~~~~lvIfv~STYg~G~  129 (534)
                      +++|+|+|.+|||+++|+.+++.|.+.|++++++++.+.                   ..+++...+.+||++|+|+ |.
T Consensus         7 kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~-~~   85 (200)
T 2a5l_A            7 YILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRF-GN   85 (200)
T ss_dssp             EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECBT-TB
T ss_pred             eEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChhc-cC
Confidence            599999999999999999999999999999999999873                   2334567899999999999 66


Q ss_pred             CchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecce
Q 038595          130 PPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPV  196 (534)
Q Consensus       130 pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~pl  196 (534)
                      +|..++.|++++....     ....|+|+++++|+.+...++ .++.+...+...|..+|+..+.+.
T Consensus        86 ~~~~lk~~ld~~~~~~-----~~~~l~~K~~~~~~t~g~~~~-~~~~~~~~l~~~l~~~g~~~~~~~  146 (200)
T 2a5l_A           86 MASPLKYFLDGTSSLW-----LTGSLVGKPAAVFTSTASLHG-GQETTQLSMLLPLLHHGMLVLGIP  146 (200)
T ss_dssp             CCHHHHHHHHTCHHHH-----HHTTTTTCEEEEEEEBSCSSC-CHHHHHHHHHHHHHHTTCEECCCC
T ss_pred             ccHHHHHHHHHHHHHh-----hccccCCCEEEEEEecCCCCC-CHHHHHHHHHHHHHHCCCEEECCC
Confidence            7777889988875431     113589999999998766543 346788899999999999877543

>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8

Probab=99.41  E-value=1.5e-12  Score=121.39  Aligned_cols=147  Identities=12%  Similarity=-0.011  Sum_probs=111.8

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhh-CCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTS-NDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESAND  147 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~-~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~D  147 (534)
                      +++|+|+|.||||+++|+.|++.|.+ .|++++++++.+.+.+++.+++.+||++|||. |.+|..+..|++++....  
T Consensus         6 kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~~aD~ii~gsP~y~-g~~~~~lk~fld~~~~~~--   82 (188)
T 2ark_A            6 KVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLWADGLAVGSPTNM-GLVSWKMKRFFDDVLGDL--   82 (188)
T ss_dssp             EEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHHCSEEEEEEECBT-TBCCHHHHHHHHHTGGGT--
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHHhCCEEEEEeCccC-CcCCHHHHHHHHHHhhhh--
Confidence            59999999999999999999999998 89999999999988888888999999999996 778888999998875421  


Q ss_pred             ccccccCCCCCeEEEEEe-cCcchHHHHHHHHHHHHHHHHHcCCceecc------eEE------eeCC-C-CCcHHHHHH
Q 038595          148 FRVGSLLLSNCKFAVFGV-GSKSYEKTFNMVAKDLSKKMRELGAGEVLP------VVE------GDVD-G-GELDVVFED  212 (534)
Q Consensus       148 FRv~~~~Lkgl~yAVFGL-GDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~p------lg~------gD~~-~-g~~e~~f~e  212 (534)
                          ...|+|+.+++||. |+...  .+..+.+.+...|..+|+..+..      ...      .... + ++..+.+.+
T Consensus        83 ----~~~l~gk~~~~~~t~g~~~g--~~~~~l~~l~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~  156 (188)
T 2ark_A           83 ----WGEIDGKIACAFSSSGGWGG--GNEVACMSILTMLMNFGFLVFGVTDYVGKKFTLHYGAVVAGEPRSEEEKEACRR  156 (188)
T ss_dssp             ----TTSCTTCEEEEEEEESSBTS--SHHHHHHHHHHHHHHTTCEECCEEEEEETTEEESSSEEEESSCCSHHHHHHHHH
T ss_pred             ----HHHhCCCeEEEEEECCCCCC--CHHHHHHHHHHHHHHCCcEEeCCCccccccccCCCcceeecCCCcHHHHHHHHH
Confidence                13588999999998 54432  24566777888888888865531      111      0111 1 112356678


Q ss_pred             HHHHHHHHHHhc
Q 038595          213 WSKRVVAILKSG  224 (534)
Q Consensus       213 W~~~L~~~L~~~  224 (534)
                      |.+.|...+...
T Consensus       157 ~g~~la~~~~~~  168 (188)
T 2ark_A          157 LGRRLAEWVAIF  168 (188)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888877654

>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*

Probab=99.38  E-value=1.6e-12  Score=131.49  Aligned_cols=69  Identities=22%  Similarity=0.331  Sum_probs=60.0

Q ss_pred             ceEEEeecCCCCCCccHHHHHHHHHhcCC--cEEEEcCCCC-HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCC
Q 038595          455 RHCALSLVGEPIMYPEINTLVDELHRRRI--STFLVTNAQF-PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRP  524 (534)
Q Consensus       455 ~h~alSl~GEPlLyp~L~elI~~lk~~gi--~~~LvTNGtl-pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP  524 (534)
                      +.+.|++ |||+|+|+|.++++.+++.+.  .+.|.|||++ ++.++.|..  ++.+.||||+.+++.|++|++.
T Consensus        68 ~~i~~tG-GEPll~~~l~~li~~~~~~~~~~~i~i~TNG~ll~~~~~~L~~~g~~~v~iSld~~~~~~~~~i~~~  141 (340)
T 1tv8_A           68 KKIRITG-GEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNR  141 (340)
T ss_dssp             CEEEEES-SCGGGSTTHHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSS
T ss_pred             CEEEEeC-CCccchhhHHHHHHHHHhCCCCCeEEEEeCccchHHHHHHHHHCCCCEEEEecCCCCHHHHHHhhCC
Confidence            4567776 999999999999999999865  7999999998 556667764  7999999999999999999984

>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*

Probab=99.37  E-value=2.5e-12  Score=131.44  Aligned_cols=141  Identities=11%  Similarity=0.078  Sum_probs=112.1

Q ss_pred             CcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCcc----CcCCCCeEEEEeccCCCCCCchHHHHHHHHHHh
Q 038595           68 NKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPE----DLSKEALVLIVASSWEDGKPPEAAKFFMNWIDE  143 (534)
Q Consensus        68 ~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~----dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e  143 (534)
                      .+++|+|+|.||||+++|+.|++.+.+.|++++++++.+.+..    ++.+++.+||++|||+.+.+| .++.|+++|..
T Consensus       257 ~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iiigsP~y~~~~~~-~~k~~ld~l~~  335 (404)
T 2ohh_A          257 ERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDEPYP-SVGDLLMYLRG  335 (404)
T ss_dssp             SEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCEETTEECT-HHHHHHHHHHH
T ss_pred             CcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECccccccchH-HHHHHHHHhhh
Confidence            4699999999999999999999999999999999999998765    467889999999999966555 59999999875


Q ss_pred             hcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCC-CCcHHHHHHHHHHHHHHH
Q 038595          144 SANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDG-GELDVVFEDWSKRVVAIL  221 (534)
Q Consensus       144 ~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~-g~~e~~f~eW~~~L~~~L  221 (534)
                      ...     .. |+|+.+++||+|...     +.+.+.+.+.|..+|++.+.+ ..+.... ++..+.+.+|.+++.+.+
T Consensus       336 ~~~-----~~-l~~k~~~~~~~~g~~-----~~a~~~l~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (404)
T 2ohh_A          336 LKF-----NR-TLTRKALVFGSMGGN-----GGATGTMKELLAEAGFDVACE-EEVYYVPTGDELDACFEAGRKLAAEI  402 (404)
T ss_dssp             HCG-----GG-TCCEEEEEEEEESSS-----CCHHHHHHHHHHHTTEEEEEE-EEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccc-----cc-cCCCEEEEEEecCCC-----ChhHHHHHHHHHHCCCEEEeE-EEEeeCCCHHHHHHHHHHHHHHHHHH
Confidence            321     12 799999999987543     456789999999999988876 4444332 123456777888877665

>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}

Probab=99.36  E-value=4.8e-12  Score=130.40  Aligned_cols=141  Identities=15%  Similarity=0.045  Sum_probs=111.9

Q ss_pred             CcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCcc----CcCCCCeEEEEeccCCCCCCchHHHHHHHHHHh
Q 038595           68 NKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPE----DLSKEALVLIVASSWEDGKPPEAAKFFMNWIDE  143 (534)
Q Consensus        68 ~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~----dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e  143 (534)
                      .+++|+|+|.||||+++|+.|++.|.+.|++++++++.+.++.    ++.+++.+||++|||+.+.+| .++.|+++|..
T Consensus       257 ~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~iiigsP~y~~~~~~-~~k~fld~l~~  335 (414)
T 2q9u_A          257 KKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAFASPTLNNTMMP-SVAAALNYVRG  335 (414)
T ss_dssp             SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEEECCCBTTBCCH-HHHHHHHHHHH
T ss_pred             CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEEEEcCccCcCchH-HHHHHHHHHHh
Confidence            3699999999999999999999999999999999999988765    567889999999999966655 48999999864


Q ss_pred             hcCcccccccCC-CCCeEEEEEecCcchHHHHHHHHHHHHHHHHH-cCCceecce-EEeeCCCC-CcHHHHHHHHHHHHH
Q 038595          144 SANDFRVGSLLL-SNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRE-LGAGEVLPV-VEGDVDGG-ELDVVFEDWSKRVVA  219 (534)
Q Consensus       144 ~~~DFRv~~~~L-kgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~k-LGA~rV~pl-g~gD~~~g-~~e~~f~eW~~~L~~  219 (534)
                      .         .+ +|+.+++||.|...     +.+.+.+.+.|.. +|++.+.+. ..+....+ +..+.+.+|.+++..
T Consensus       336 ~---------~~~~~K~~~~~~t~g~~-----~~a~~~l~~~l~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~g~~l~~  401 (414)
T 2q9u_A          336 L---------TLIKGKPAFAFGAFGWS-----NRAVPDIVAELRDGCKADVYDEKGITFKFNYTEELLEQAYNAGVDLGK  401 (414)
T ss_dssp             H---------TTTTTSBEEEEEEESSS-----CCHHHHHHHHHHHTSCCBCCCSSCEEEESCCCHHHHHHHHHHHHHHHH
T ss_pred             h---------cccCCCEEEEEEecCCC-----chhHHHHHHHHHhhcCcEEccCccEEEeeCCCHHHHHHHHHHHHHHHH
Confidence            3         35 89999999987543     3467899999999 999988754 44443321 223567778888877


Q ss_pred             HHHh
Q 038595          220 ILKS  223 (534)
Q Consensus       220 ~L~~  223 (534)
                      .+..
T Consensus       402 ~~~~  405 (414)
T 2q9u_A          402 RAIA  405 (414)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6653

>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*

Probab=99.30  E-value=1.2e-11  Score=114.55  Aligned_cols=118  Identities=13%  Similarity=0.068  Sum_probs=94.7

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhh-CCCceEEECCCCCC-------------------ccCcCCCCeEEEEeccCCCC
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTS-NDLLFDLVDPQTYE-------------------PEDLSKEALVLIVASSWEDG  128 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~-~Gl~v~V~dL~d~d-------------------~~dL~~~~lvIfv~STYg~G  128 (534)
                      +++|+|+|.+|||+++|+.+++.+.+ .|++++++++.+..                   .+++...+.+||++|||. |
T Consensus         3 kilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~-~   81 (198)
T 3b6i_A            3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRF-G   81 (198)
T ss_dssp             EEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEEEET-T
T ss_pred             eEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEEEEeChhc-C
Confidence            59999999999999999999999998 89999999998731                   345677899999999997 7


Q ss_pred             CCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595          129 KPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL  194 (534)
Q Consensus       129 ~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~  194 (534)
                      .+|..++.|++++....     ....|+|+++++|+.+... + ....+.+.+...|..+|+..+.
T Consensus        82 ~~~~~lk~~ld~~~~~~-----~~~~l~~K~~~~~~t~g~~-g-~~~~~l~~l~~~l~~~g~~~v~  140 (198)
T 3b6i_A           82 NMSGQMRTFLDQTGGLW-----ASGALYGKLASVFSSTGTG-G-GQEQTITSTWTTLAHHGMVIVP  140 (198)
T ss_dssp             EECHHHHHHHTTCHHHH-----HHTTTTTCEEEEEEEESSS-T-THHHHHHHHHHHHHHTTCEECC
T ss_pred             CchHHHHHHHHHhhhhh-----hhcccCCCEEEEEEeCCCC-c-cHHHHHHHHHHHHHHCCcEEEC
Confidence            77777888888775421     1135899999999986543 2 3346778888889999987664

>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}

Probab=99.26  E-value=1e-11  Score=115.54  Aligned_cols=147  Identities=13%  Similarity=0.022  Sum_probs=107.6

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCC-----------------C---ccCcCCCCeEEEEeccCCCC
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTY-----------------E---PEDLSKEALVLIVASSWEDG  128 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~-----------------d---~~dL~~~~lvIfv~STYg~G  128 (534)
                      +|+|+|+| +|||+++|+.+++.+.+.|.+++++++.+.                 .   .+++...+.+||++|+|. |
T Consensus         6 kilii~~S-~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~aD~ii~gsP~y~-~   83 (199)
T 2zki_A            6 NILVLFYG-YGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGSPTRY-G   83 (199)
T ss_dssp             EEEEEECC-SSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHHHCSEEEEEEECBT-T
T ss_pred             EEEEEEeC-ccHHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCcccccccccHHHHHhCCEEEEECCccc-c
Confidence            59999999 999999999999999988999999999876                 1   223456789999999999 6


Q ss_pred             CCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEE----------
Q 038595          129 KPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVE----------  198 (534)
Q Consensus       129 ~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~----------  198 (534)
                      .+|..++.|++++....     ....|+|+.+++|+.+...++ ....+...+...|..+|+..+.+...          
T Consensus        84 ~~~~~lk~~ld~~~~~~-----~~~~l~gK~~~~~~t~g~~~~-g~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~  157 (199)
T 2zki_A           84 NMAGGLKTFLDTTAILW-----KDNVLYGKPVTFFTEASTVHG-GHETTILTMSTYAYHFGMIIVPIGYGIPELFQTTTG  157 (199)
T ss_dssp             BCCHHHHHHHHTTHHHH-----HTTSSTTCEEEEEEEBSSTTS-SSSHHHHHHTHHHHHHTCEECCCTTCSTHHHHCSSS
T ss_pred             CccHHHHHHHHHhhhcc-----cccccCCCEEEEEEeCCCCCC-CHHHHHHHHHHHHHHCCeEEeCCCcCCccccccccC
Confidence            77777888888875321     123689999999997655432 23567888999999999876643211          


Q ss_pred             ------eeC----C-CCCcHHHHHHHHHHHHHHHHh
Q 038595          199 ------GDV----D-GGELDVVFEDWSKRVVAILKS  223 (534)
Q Consensus       199 ------gD~----~-~g~~e~~f~eW~~~L~~~L~~  223 (534)
                            .+.    . +++..+.+.+|.++|...++.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~~~  193 (199)
T 2zki_A          158 GGPYGATHLGSKEELDEMERKIARFQGKRITEVAKA  193 (199)
T ss_dssp             CCSSCCCCBSSCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcceeeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                  011    1 111234566788888877654

>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*

Probab=99.26  E-value=1.5e-11  Score=115.98  Aligned_cols=149  Identities=15%  Similarity=0.086  Sum_probs=109.5

Q ss_pred             CcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCC--------------------Cc-----cCcCCCCeEEEEe
Q 038595           68 NKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTY--------------------EP-----EDLSKEALVLIVA  122 (534)
Q Consensus        68 ~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~--------------------d~-----~dL~~~~lvIfv~  122 (534)
                      .+|+|+|+|.+|||+++|+.+++.+.+.|.+++++++.+.                    +.     +++...+.+||++
T Consensus         7 mkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~gs   86 (211)
T 1ydg_A            7 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSS   86 (211)
T ss_dssp             CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEE
T ss_pred             CeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEEc
Confidence            3699999999999999999999999999999999999875                    31     1245678999999


Q ss_pred             ccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecce------
Q 038595          123 SSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPV------  196 (534)
Q Consensus       123 STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~pl------  196 (534)
                      |+|. |.+|..++.|++++....     ....|+|+++++|+.+...++ .+..+...+...|..+|+..+.+.      
T Consensus        87 P~y~-~~~~~~lk~~ld~~~~~~-----~~~~l~gK~~~~~~t~g~~~~-~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~  159 (211)
T 1ydg_A           87 PTRF-GGATSQMRAFIDTLGGLW-----SSGKLANKTFSAMTSAQNVNG-GQETTLQTLYMTAMHWGAVLTPPGYTDEVI  159 (211)
T ss_dssp             EEET-TEECHHHHHHHHTTHHHH-----HTTTTTTCEEEEEEEESSTTS-STTHHHHHHHHHHHTTTCEECCCTTCSHHH
T ss_pred             Cccc-cCccHHHHHHHHHhcccc-----ccccCCCCEEEEEEeCCCCCC-ChHHHHHHHHHHHHHCCCEEeCCCCCChhh
Confidence            9999 677777888888875321     123588999999998655442 236778889999999998766541      


Q ss_pred             --------EEeeCC-----CCCcHHHHHHHHHHHHHHHHh
Q 038595          197 --------VEGDVD-----GGELDVVFEDWSKRVVAILKS  223 (534)
Q Consensus       197 --------g~gD~~-----~g~~e~~f~eW~~~L~~~L~~  223 (534)
                              +..+..     +++..+.+.+|.+.|...++.
T Consensus       160 ~~~~~~~~g~~~~~~~~~p~~~~~~~a~~~g~~l~~~~~~  199 (211)
T 1ydg_A          160 FKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAK  199 (211)
T ss_dssp             HHTTCCSSSCEEECCSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCccceeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                    111111     112235667888888877654

>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*

Probab=99.24  E-value=7.7e-12  Score=131.97  Aligned_cols=123  Identities=17%  Similarity=0.242  Sum_probs=89.7

Q ss_pred             CeeeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccc
Q 038595          347 HRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSA  426 (534)
Q Consensus       347 ~~c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~  426 (534)
                      ..|+-.  ...||.+|.||+.+...      ....-.|+||++.++.....+ .. .|.+|                   
T Consensus       116 tlcVSs--q~GCnl~C~fC~tg~~g------~~r~Lt~eEIv~qv~~~~~~~-~~-~g~~g-------------------  166 (404)
T 3rfa_A          116 TLCVSS--QVGCALECKFCSTAQQG------FNRNLRVSEIIGQVWRAAKIV-GA-AKVTG-------------------  166 (404)
T ss_dssp             EEECCC--EEECSSCCTTCGGGTTC------EEEECCHHHHHHHHHHHHHHH-CC-HHHHS-------------------
T ss_pred             eEEEEe--CCCCCCcCCCCCCCCCC------CCCcCCHHHHHHHHHHHHHHh-hh-ccccc-------------------
Confidence            345544  35799999999986432      223468999999887653322 10 01001                   


Q ss_pred             cccCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCc-cHHHHHHHHHh-cCC-----cEEEEcCCCCHHHHhh
Q 038595          427 IDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYP-EINTLVDELHR-RRI-----STFLVTNAQFPDKIKL  499 (534)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp-~L~elI~~lk~-~gi-----~~~LvTNGtlpe~l~~  499 (534)
                                     |         ..+++++|++.||||+++ .+.++++.+++ .|+     .+.|.|||.+|. +++
T Consensus       167 ---------------g---------~~i~~Ivf~GgGEPLln~d~v~~~i~~lk~~~Gl~~s~r~itlsTnG~~p~-i~~  221 (404)
T 3rfa_A          167 ---------------Q---------RPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPA-LDK  221 (404)
T ss_dssp             ---------------S---------CSCSEEEECSSSCGGGCHHHHHHHHHHHHSTTTTCCCGGGEEEEESCCHHH-HHH
T ss_pred             ---------------C---------CCccEEEEeCCCCcccCHHHHHHHHHHHHhhcCcCcCCCceEEECCCcHHH-HHH
Confidence                           0         136889999999999985 79999999998 488     899999999875 455


Q ss_pred             cCC--CceEEEEeeCCCHHHHHhhcC
Q 038595          500 LKP--VTQLYVSVDAATKDSLKAIDR  523 (534)
Q Consensus       500 L~~--v~qlyvSlDA~~~e~y~~I~r  523 (534)
                      |.+  ...|.|||+++|++.|++|.+
T Consensus       222 L~~~~d~~LaiSLka~d~e~~~~i~p  247 (404)
T 3rfa_A          222 LGDMIDVALAISLHAPNDEIRDEIVP  247 (404)
T ss_dssp             HHHHCCCEEEEECCCSSHHHHHHHSG
T ss_pred             HHHhhcceEEecccCCCHHHHHHhcC
Confidence            554  246789999999999999984

>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*

Probab=99.17  E-value=3.9e-11  Score=112.85  Aligned_cols=117  Identities=13%  Similarity=0.122  Sum_probs=92.4

Q ss_pred             cEEEEEECc--cchHHHHHHHHHHH-HhhCCCceEEECCCCCCc-----------------cCcCCCCeEEEEeccCCCC
Q 038595           69 KGKLFFISQ--TGTSKTLAKRLHAL-LTSNDLLFDLVDPQTYEP-----------------EDLSKEALVLIVASSWEDG  128 (534)
Q Consensus        69 kVlI~YgSq--TGtTE~lAe~La~~-L~~~Gl~v~V~dL~d~d~-----------------~dL~~~~lvIfv~STYg~G  128 (534)
                      +++|+|+|.  +|+|+++|+.+++. |.+.|.+++++|+.+++.                 +++...+.+||++|+|+ |
T Consensus         4 kilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~-~   82 (197)
T 2vzf_A            4 SIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYK-A   82 (197)
T ss_dssp             EEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBT-T
T ss_pred             eEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccC-C
Confidence            589999997  89999999999999 998899999999988753                 22456899999999998 5


Q ss_pred             CCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceE
Q 038595          129 KPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVV  197 (534)
Q Consensus       129 ~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg  197 (534)
                      .+|..++.|++|+.         ...++|+.+++|+.|....  ++......+...|..+|+..+.+..
T Consensus        83 ~~p~~lK~~ld~l~---------~~~~~gK~~~~~~tgg~~~--~~~a~~~~l~~~l~~~g~~~v~~~v  140 (197)
T 2vzf_A           83 SYTGLLKAFLDILP---------QFALAGKAALPLATGGSPA--HVLALDYGLRPVLHSMGVRHVVQSF  140 (197)
T ss_dssp             BCCHHHHHHHTTSC---------TTTTTTCEEEEEEEESSGG--GGGHHHHTHHHHHHTTTCSEECCCE
T ss_pred             CCCHHHHHHHHhcc---------ccccCCCEEEEEEECCCcc--hhhHHHHHHHHHHHHcCCEeccceE
Confidence            66777888888763         2368999999999875532  2232224688999999998875433

>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}

Probab=99.17  E-value=1e-10  Score=107.48  Aligned_cols=125  Identities=14%  Similarity=0.135  Sum_probs=85.2

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCC-----------------------------CccCcCCCCeEE
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTY-----------------------------EPEDLSKEALVL  119 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~-----------------------------d~~dL~~~~lvI  119 (534)
                      +++|+|.|.||||+++|+.|++.+....+.  +.+...+                             ...++.+++.+|
T Consensus         6 kilIvY~S~tG~T~~vA~~Ia~~l~~~~~~--i~~~~~y~~~~l~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~yd~ii   83 (162)
T 3klb_A            6 KILVAYFSCSGVTKAVAEKLAAITGADLYE--IKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPEKYEVLF   83 (162)
T ss_dssp             CEEEEECCSSSHHHHHHHHHHHHHTCEEEE--CCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCSCGGGCSEEE
T ss_pred             CEEEEEECCCchHHHHHHHHHHHhCCCeEE--EEeCCcCCccccchhhHHHHHHHHHhccccCccccccccChhhCCEEE
Confidence            599999999999999999999998632111  1111111                             123466789999


Q ss_pred             EEeccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEe-cCcchHHHHHHHHHHHHHHHHHcCCceecceEE
Q 038595          120 IVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGV-GSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVE  198 (534)
Q Consensus       120 fv~STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGL-GDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~  198 (534)
                      |++|||. |.+|..+..|++.+            .|+|+++++|+. |.+.++    .+.+.+.+.|.  |++. .+...
T Consensus        84 lG~P~~~-g~~~~~~~~fl~~~------------~l~gk~v~~f~t~g~~~~g----~~~~~l~~~l~--~~~~-~~g~~  143 (162)
T 3klb_A           84 VGFPVWW-YIAPTIINTFLESY------------DFAGKIVVPFATSGGSGIG----NCEKNLHKAYP--DIVW-KDGKL  143 (162)
T ss_dssp             EEEECBT-TBCCHHHHHHHHTS------------CCTTCEEEEEEECSSCCSH----HHHHHHHHHCT--TSEE-CCCEE
T ss_pred             EEccccc-CCCCHHHHHHHHhc------------CCCCCEEEEEEEeCCCCcc----HHHHHHHHHcC--CCEe-ecceE
Confidence            9999998 67777677775532            578999999986 555553    56677777765  5543 34444


Q ss_pred             eeCCCCCcHHHHHHHHHHH
Q 038595          199 GDVDGGELDVVFEDWSKRV  217 (534)
Q Consensus       199 gD~~~g~~e~~f~eW~~~L  217 (534)
                      +...  ..++++++|.+++
T Consensus       144 ~~g~--~~~~~v~~W~~~~  160 (162)
T 3klb_A          144 LNGQ--ITRDLVTEWFEKI  160 (162)
T ss_dssp             CCSC--CCHHHHHHHHHHT
T ss_pred             EeCC--CCHHHHHHHHHHh
Confidence            4332  2367899998765

>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}

Probab=99.17  E-value=1.4e-11  Score=115.66  Aligned_cols=115  Identities=12%  Similarity=0.022  Sum_probs=89.7

Q ss_pred             CcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCC---CCc---cCcCCCCeEEEEeccCCCCCCchHHHHHHHHH
Q 038595           68 NKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQT---YEP---EDLSKEALVLIVASSWEDGKPPEAAKFFMNWI  141 (534)
Q Consensus        68 ~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d---~d~---~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L  141 (534)
                      .+|+|+|+|.||||+++|+.|++.|.+.+     +++.+   ++.   +++..++.+||++|||. |.+|..++.|++++
T Consensus         7 ~kiliiy~S~~GnT~~lA~~ia~~l~~~~-----~~v~~~~~~~~~~~~~l~~~D~ii~gsP~y~-g~~~~~~k~fld~~   80 (193)
T 3d7n_A            7 SNTVVVYHSGYGHTHRMAEAVAEGAEATL-----HAIDAEGNLSEDGWAALDAADAIIFGTPTYM-GGPSWQFKKFADAS   80 (193)
T ss_dssp             CCEEEEECCSSSHHHHHHHHHHHHHTCEE-----EECCTTSCCCHHHHHHHHHCSEEEEEEEEET-TEECHHHHHHHHHT
T ss_pred             CEEEEEEECCChHHHHHHHHHHHHhhhcc-----eEeeecCCCCHhHHHHHHHCCEEEEEeCccC-CCccHHHHHHHHHh
Confidence            35999999999999999999999998643     34433   221   34667899999999998 77788899999887


Q ss_pred             HhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595          142 DESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL  194 (534)
Q Consensus       142 ~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~  194 (534)
                      ....     ....|+++.+++|+.+...++ .+..+...+...|..+|+..+.
T Consensus        81 ~~~~-----~~~~l~gK~~~~f~s~g~~~g-~~~~~l~~l~~~l~~~G~~~vg  127 (193)
T 3d7n_A           81 SKPW-----FSAKWQDKVFGGFTNSASLNG-DKLNTLQYLVLLAGQHGGLWVS  127 (193)
T ss_dssp             HHHH-----HTTTTTTCEEEEEEEESSCHH-HHHHHHHHHHHHHHHTTCEECC
T ss_pred             hhhc-----cccccCCCEEEEEEECCCCCC-ChHHHHHHHHHHHHHCCCEEeC
Confidence            5321     123588999999999866665 4677889999999999986553

>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}

Probab=99.15  E-value=4.5e-10  Score=104.47  Aligned_cols=121  Identities=20%  Similarity=0.196  Sum_probs=85.9

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCC---CC-----------------------------ccCcCCCC
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQT---YE-----------------------------PEDLSKEA  116 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d---~d-----------------------------~~dL~~~~  116 (534)
                      +++|+|.|.||||+++|+.|++.+..     +++++..   +.                             ..++..++
T Consensus        15 kilIvY~S~tGnT~~vA~~Ia~~l~~-----d~~~I~~~~~y~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~yD   89 (171)
T 4ici_A           15 KILVAYFSATGTTARAAEKLGAAVGG-----DLYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSKKENIGTYD   89 (171)
T ss_dssp             CEEEEECCSSSHHHHHHHHHHHHHTC-----EEEECCBSSCCCTGGGCTTCTTSHHHHHHHCTTCCCCBSCCCTTGGGCS
T ss_pred             CEEEEEECCCChHHHHHHHHHHHhCC-----CeEEEeeCCCCCccccchhhHhHHHHHHHhcccCCcccccccccHhHCC
Confidence            59999999999999999999999953     2333332   11                             13466789


Q ss_pred             eEEEEeccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecC-cchHHHHHHHHHHHHHHHHHcCCceecc
Q 038595          117 LVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGS-KSYEKTFNMVAKDLSKKMRELGAGEVLP  195 (534)
Q Consensus       117 lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGD-s~Y~e~Fc~aAK~LDk~L~kLGA~rV~p  195 (534)
                      .+||++|||. |.+|..+..|++.+            .|+|+++++|+.+- +.+    ..+.+.+.+.|.  +++ +.+
T Consensus        90 ~iilg~Pvy~-g~~~~~~~~fl~~~------------~l~gk~v~~f~t~g~~~~----g~a~~~l~~~l~--~~~-~~~  149 (171)
T 4ici_A           90 VVFIGYPIWW-DLAPRIINTFIEGH------------SLKGKTVVPFATSGGSSI----GNSATVLKKTYP--DLN-WKE  149 (171)
T ss_dssp             EEEEEEECBT-TBCCHHHHHHHHHS------------CCTTSEEEEEEECSSCCS----HHHHHHHHHHST--TSE-ECC
T ss_pred             EEEEeccccc-CCchHHHHHHHHHc------------CCCcCEEEEEEecCCCCc----chHHHHHHHHcC--CCe-ecc
Confidence            9999999999 66666677776543            47899999999743 333    456777777765  444 445


Q ss_pred             eEEeeCCCCCcHHHHHHHHHHH
Q 038595          196 VVEGDVDGGELDVVFEDWSKRV  217 (534)
Q Consensus       196 lg~gD~~~g~~e~~f~eW~~~L  217 (534)
                      ...++..   .+..+.+|.+++
T Consensus       150 g~~~~~~---~~~~i~~Wl~~~  168 (171)
T 4ici_A          150 GRLLNRT---DEKAIRAWLDVI  168 (171)
T ss_dssp             CEECSSC---CHHHHHHHHHHH
T ss_pred             CeEecCC---CHHHHHHHHHHh
Confidence            4444432   367899998875

>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}

Probab=99.08  E-value=1.1e-10  Score=107.85  Aligned_cols=69  Identities=12%  Similarity=0.172  Sum_probs=61.7

Q ss_pred             ceEEEeecCCCCCCccH-HHHHHHHHhcCCcEEEEcCCCC-HHHHhhcCC-CceEEEEeeCCCHHHHHhhcCC
Q 038595          455 RHCALSLVGEPIMYPEI-NTLVDELHRRRISTFLVTNAQF-PDKIKLLKP-VTQLYVSVDAATKDSLKAIDRP  524 (534)
Q Consensus       455 ~h~alSl~GEPlLyp~L-~elI~~lk~~gi~~~LvTNGtl-pe~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP  524 (534)
                      ..++|++ |||||+|++ .++++++++.|+.+.|.|||++ ++.++.|.+ ++.+.||||+.+++.|+++++.
T Consensus         5 ~~v~~tG-GEPll~~~~~~~l~~~~~~~g~~~~l~TNG~l~~~~~~~l~~~~d~v~isld~~~~~~~~~~~g~   76 (182)
T 3can_A            5 GGVTFCG-GEPLLHPEFLIDILKRCGQQGIHRAVDTTLLARKETVDEVMRNCELLLIDLKSMDSTVHQTFCDV   76 (182)
T ss_dssp             CCEEECS-STGGGSHHHHHHHHHHHHHTTCCEEEECTTCCCHHHHHHHHHTCSEEEEECCCSCHHHHHHHHSS
T ss_pred             CEEEEEc-ccccCCHHHHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHhhCCEEEEECCCCCHHHHHHHhCC
Confidence            4678888 999999997 6999999999999999999997 567777765 8999999999999999999864

>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*

Probab=99.01  E-value=1.9e-09  Score=99.85  Aligned_cols=151  Identities=15%  Similarity=0.102  Sum_probs=107.6

Q ss_pred             cEEEEEECcc---chHHHHHHHHHHHHhhCC--CceEEECCCCCCc---------------------------------c
Q 038595           69 KGKLFFISQT---GTSKTLAKRLHALLTSND--LLFDLVDPQTYEP---------------------------------E  110 (534)
Q Consensus        69 kVlI~YgSqT---GtTE~lAe~La~~L~~~G--l~v~V~dL~d~d~---------------------------------~  110 (534)
                      +++|+|+|..   |+|+++|+.+.+.+.+.|  .+++++|+.+.+.                                 +
T Consensus         3 kilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   82 (201)
T 1t5b_A            3 KVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIA   82 (201)
T ss_dssp             EEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHH
Confidence            5999999998   999999999999999875  8899999987542                                 1


Q ss_pred             CcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCccccc----ccCCCCCeEEEEEecCcchHH-HHHHHHHHHHHHH
Q 038595          111 DLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVG----SLLLSNCKFAVFGVGSKSYEK-TFNMVAKDLSKKM  185 (534)
Q Consensus       111 dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~----~~~Lkgl~yAVFGLGDs~Y~e-~Fc~aAK~LDk~L  185 (534)
                      ++...+.+||++|+|. +.+|...+.|++++......|+..    ...|+|+++++|+.+...|+. .|+.+...+...|
T Consensus        83 ~l~~aD~iv~~~P~y~-~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~~l  161 (201)
T 1t5b_A           83 ELKAHDVIVIAAPMYN-FNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVFL  161 (201)
T ss_dssp             HHHHCSEEEEECCCBT-TBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHHHH
T ss_pred             HHHhCCEEEEEeCccc-CcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHHHH
Confidence            2345789999999999 556666888988886432223221    235899999999875554542 2556777889999


Q ss_pred             HHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHH
Q 038595          186 RELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILK  222 (534)
Q Consensus       186 ~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~  222 (534)
                      ..+|++.+.......... + +...++|.++..+.+.
T Consensus       162 ~~~G~~~~~~~~~~~~~~-~-~~~~~~~l~~a~~~~~  196 (201)
T 1t5b_A          162 GFIGITDVNFVFAEGIAY-G-PEVAAKAQADAKAAID  196 (201)
T ss_dssp             HHTTCCCEEEEEECCGGG-C-HHHHHHHHHHHHHHHH
T ss_pred             hhcCcceeEEEEEecccC-C-hHHHHHHHHHHHHHHH
Confidence            999998775433322222 2 3445777766655544

>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}

Probab=98.98  E-value=4.2e-10  Score=101.98  Aligned_cols=102  Identities=15%  Similarity=0.284  Sum_probs=73.9

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCC-CceEE----ECC-------------------CCC--CccCcCCCCeEEEEe
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSND-LLFDL----VDP-------------------QTY--EPEDLSKEALVLIVA  122 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~G-l~v~V----~dL-------------------~d~--d~~dL~~~~lvIfv~  122 (534)
                      +++|+|.|.||||+++|+.|++.|...+ +++++    ++.                   .++  ...++..++.+||++
T Consensus         5 kilIvY~S~tGnT~~iA~~Ia~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~~d~iilG~   84 (151)
T 3edo_A            5 KTLILYYSWSGETKKMAEKINSEIKDSELKEVKVSEGTFDADXYKTSDIALDQIQGNKDFPEIQLDNIDYNNYDLILIGS   84 (151)
T ss_dssp             CEEEEECCSSSHHHHHHHHHHHHSTTCEEEECBCCTTSSCSSHHHHHHHHHHHHTTSSCCCCCBCCCCCGGGCSEEEEEE
T ss_pred             cEEEEEECCCCcHHHHHHHHHHhccCCCEEEEEcCCCCCCchhhhhhHHHHHHHhcccCCcccchhhhCHhhCCEEEEEc
Confidence            5999999999999999999999986443 23332    110                   011  123566789999999


Q ss_pred             ccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHH
Q 038595          123 SSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR  186 (534)
Q Consensus       123 STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~  186 (534)
                      |||. |.+|..+..|++.+.           .+.++.+++|++|....+    .+.+.+.+.|.
T Consensus        85 P~~~-g~~~~~~~~fl~~~~-----------~~~~k~~~~~t~gg~~~g----~~~~~l~~~~~  132 (151)
T 3edo_A           85 PVWS-GYPATPIKTLLDQMK-----------NYRGEVASFFTSAGTNHK----AYVSHFNEWAD  132 (151)
T ss_dssp             EEET-TEECTHHHHHHHHTT-----------TCCSEEEEEEECSSCCHH----HHHHHHHHHTT
T ss_pred             ceec-ccccHHHHHHHHhch-----------hcCCEEEEEEEeCCCCCC----cHHHHHHHHcC
Confidence            9998 777777888887652           356789999999877654    45666777664

>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*

Probab=98.91  E-value=2.2e-09  Score=98.57  Aligned_cols=113  Identities=14%  Similarity=0.166  Sum_probs=84.9

Q ss_pred             cEEEEEECcc--chHHHHHHHHHHHHhhCCCceEEECCCCCCcc-------------------CcCCCCeEEEEeccCCC
Q 038595           69 KGKLFFISQT--GTSKTLAKRLHALLTSNDLLFDLVDPQTYEPE-------------------DLSKEALVLIVASSWED  127 (534)
Q Consensus        69 kVlI~YgSqT--GtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~-------------------dL~~~~lvIfv~STYg~  127 (534)
                      +|+|+|+|..  |+|+++|+.+++.+..     +++++.+++..                   ++...+.+||++|+|+ 
T Consensus         2 kilii~gS~~~~g~t~~la~~i~~~l~~-----~~i~l~~~~lp~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~tP~y~-   75 (174)
T 3gfs_A            2 NMLVINGTPRKHGRTRIAASYIAALYHT-----DLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEYH-   75 (174)
T ss_dssp             -CEEEECCCCTTCHHHHHHHHHHHHTTC-----EEEETTTSCCCCCCCCHHHHTCHHHHHHHHHHHHCSSEEEEEECSS-
T ss_pred             EEEEEECCCCCCCcHHHHHHHHHHhCcc-----eEEeeecCCCCCCCChhhccCcHHHHHHHHHHHHCCEEEEEcCCcC-
Confidence            4899999998  9999999999999864     46666655431                   2446789999999997 


Q ss_pred             CCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEe-cCcchHHHHHHHHHHHHHHHHHcCCceecceEEe
Q 038595          128 GKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGV-GSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEG  199 (534)
Q Consensus       128 G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGL-GDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~g  199 (534)
                      +.+|..++.|++||..         ..++|+.+++|+. |...   .+..+...+...|..+|+..+-+...+
T Consensus        76 ~~~p~~lk~~lD~l~~---------~~~~gK~~~~~~~sgg~~---g~~~a~~~l~~~l~~~g~~~v~~~v~i  136 (174)
T 3gfs_A           76 SGMSGALKNALDFLSS---------EQFKYKPVALLAVAGGGD---GGINALNNMRTVMRGVYANVIPKQLVL  136 (174)
T ss_dssp             SSCCHHHHHHHHTCCH---------HHHTTCEEEEEEECCSTT---CSHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             CCCCHHHHHHHHHhCH---------hhhCCCcEEEEEECCCCh---hHHHHHHHHHHHHHHcCCEEecceEEe
Confidence            6667778888887743         3578999999994 4221   235778889999999999877543333

>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*

Probab=98.86  E-value=4e-09  Score=106.33  Aligned_cols=119  Identities=19%  Similarity=0.284  Sum_probs=87.1

Q ss_pred             CeeeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccc
Q 038595          347 HRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSA  426 (534)
Q Consensus       347 ~~c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~  426 (534)
                      +-|.-+..|..|+++|.||.....+....  +.. -++++|++.+.+..     .+ |                      
T Consensus        52 ~~~~~i~~t~~C~~~C~fC~~~~~~~~~~--~~~-ls~eei~~~i~~~~-----~~-g----------------------  100 (348)
T 3iix_A           52 HIRAIIEFSNVCRKNCLYCGLRRDNKNLK--RYR-MTPEEIVERARLAV-----QF-G----------------------  100 (348)
T ss_dssp             EEEEEEEEECCCSCCCTTCTTCTTCCSSC--CCB-CCHHHHHHHHHHHH-----HT-T----------------------
T ss_pred             EEEEEeEecCCcCCcCccCCCCCCCCCcC--cee-CCHHHHHHHHHHHH-----HC-C----------------------
Confidence            34555666889999999998655432211  112 47888888775432     11 2                      


Q ss_pred             cccCCCCCCCCcccccccHHHhhhccCCceEEEeecCC-CCCC-ccHHHHHHHHHhcCCcEEEEcCCCC-HHHHhhcCC-
Q 038595          427 IDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGE-PIMY-PEINTLVDELHRRRISTFLVTNAQF-PDKIKLLKP-  502 (534)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GE-PlLy-p~L~elI~~lk~~gi~~~LvTNGtl-pe~l~~L~~-  502 (534)
                                                 ++++.|+ .|| |++. +++.++++.+++.++.+. +|||.+ ++.++.|.+ 
T Consensus       101 ---------------------------~~~i~~~-gGe~p~~~~~~~~~li~~i~~~~~~i~-~s~g~l~~e~l~~L~~a  151 (348)
T 3iix_A          101 ---------------------------AKTIVLQ-SGEDPYXMPDVISDIVKEIKKMGVAVT-LSLGEWPREYYEKWKEA  151 (348)
T ss_dssp             ---------------------------CSEEEEE-ESCCGGGTTHHHHHHHHHHHTTSCEEE-EECCCCCHHHHHHHHHH
T ss_pred             ---------------------------CCEEEEE-eCCCCCccHHHHHHHHHHHHhcCceEE-EecCCCCHHHHHHHHHh
Confidence                                       2345554 488 8887 799999999999887766 466665 888888885 


Q ss_pred             -CceEEEEeeCCCHHHHHhhcCCC
Q 038595          503 -VTQLYVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       503 -v~qlyvSlDA~~~e~y~~I~rP~  525 (534)
                       ++.+.+|+++.+++.|++|++..
T Consensus       152 g~~~v~i~let~~~~~~~~i~~~~  175 (348)
T 3iix_A          152 GADRYLLRHETANPVLHRKLRPDT  175 (348)
T ss_dssp             TCCEEECCCBCSCHHHHHHHSTTS
T ss_pred             CCCEEeeeeeeCCHHHHHHhCCCc
Confidence             89999999999999999999754

>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*

Probab=98.85  E-value=2.4e-08  Score=96.65  Aligned_cols=147  Identities=14%  Similarity=0.150  Sum_probs=109.3

Q ss_pred             cEEEEEECcc--chHHHHHHHHHHHHhhC-CCceEEECCCCCCc---------------------cC-------cCCCCe
Q 038595           69 KGKLFFISQT--GTSKTLAKRLHALLTSN-DLLFDLVDPQTYEP---------------------ED-------LSKEAL  117 (534)
Q Consensus        69 kVlI~YgSqT--GtTE~lAe~La~~L~~~-Gl~v~V~dL~d~d~---------------------~d-------L~~~~l  117 (534)
                      +|+|+|+|..  |+|+++|+.+++.|.+. |.+++++|+.++++                     ++       +...+.
T Consensus         3 kIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~   82 (242)
T 1sqs_A            3 KIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDI   82 (242)
T ss_dssp             EEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSE
T ss_pred             eEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCE
Confidence            5999999986  99999999999999887 99999999987642                     22       345789


Q ss_pred             EEEEeccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceE
Q 038595          118 VLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVV  197 (534)
Q Consensus       118 vIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg  197 (534)
                      +||++|+|. +.+|..++.|++++....     ....|+|+++++|+.+....   +..+...+...|..+|+..+.+..
T Consensus        83 iI~~sP~y~-~~~p~~lK~~iDr~~~~~-----~~~~l~gK~~~~i~t~g~~g---~~~~~~~l~~~l~~~G~~~v~~~~  153 (242)
T 1sqs_A           83 IIISSPVYL-QNVSVDTKNFIERIGGWS-----HLFRLAGKFVVTLDVAESNG---SDNVSEYLRDIFSYMGGQILHQVS  153 (242)
T ss_dssp             EEEEEEECS-SSCCHHHHHHHHHTGGGT-----TTTTTTTCEEEEEEEESSCC---SCCHHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEEEccccc-cCCCHHHHHHHHHHHHhc-----cccccCCCEEEEEEeCCCCc---hhhHHHHHHHHHHHCCCeeeeEEE
Confidence            999999999 555666888988874321     12368999999987642221   135677889999999998876654


Q ss_pred             EeeCCCCCcHHHHHHHHHHHHHHHHhc
Q 038595          198 EGDVDGGELDVVFEDWSKRVVAILKSG  224 (534)
Q Consensus       198 ~gD~~~g~~e~~f~eW~~~L~~~L~~~  224 (534)
                      ..+...+...+.+.++.+.|...+...
T Consensus       154 ~~~~~~~~~~~~~~~~~~~la~~i~~~  180 (242)
T 1sqs_A          154 ITNSLKDIAEAQLMEATYKIEDVLEGK  180 (242)
T ss_dssp             EEGGGGGGHHHHHHHHHHHHHHHHTTC
T ss_pred             EeccCChHHHHHHHHHHHHHHHHHhcC
Confidence            433312234578888999999888653

>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4

Probab=98.81  E-value=2.6e-08  Score=92.32  Aligned_cols=112  Identities=13%  Similarity=0.101  Sum_probs=88.2

Q ss_pred             cEEEEEECcc--chHHHHHHHHHHHHhhC------CCceEEECCCCCCc-----------------------------cC
Q 038595           69 KGKLFFISQT--GTSKTLAKRLHALLTSN------DLLFDLVDPQTYEP-----------------------------ED  111 (534)
Q Consensus        69 kVlI~YgSqT--GtTE~lAe~La~~L~~~------Gl~v~V~dL~d~d~-----------------------------~d  111 (534)
                      +|+|+|+|..  |+|+++|+.+.+.+.+.      |.+++++|+.+.+.                             ++
T Consensus         2 kilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (191)
T 1t0i_A            2 KVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRI   81 (191)
T ss_dssp             EEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHH
T ss_pred             eEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHH
Confidence            5899999998  99999999999999876      78999999875321                             12


Q ss_pred             cCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCc
Q 038595          112 LSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAG  191 (534)
Q Consensus       112 L~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~  191 (534)
                      +...+.+||++|+|+ +.+|..++.|++++.          ..|+|+++++|+.|....    ..+...+...|..+|++
T Consensus        82 l~~aD~iI~~sP~y~-~~~p~~lK~~iD~~~----------~~l~gK~~~~~~~G~~~~----~~~~~~l~~~l~~~G~~  146 (191)
T 1t0i_A           82 VNALDIIVFVTPQYN-WGYPAALKNAIDRLY----------HEWHGKPALVVSYGGHGG----SKCNDQLQEVLHGLKMN  146 (191)
T ss_dssp             HHTCSEEEEEEECBT-TBCCHHHHHHHHTCS----------TTTTTCEEEEEEEETTTT----HHHHHHHHHHHHHTTCE
T ss_pred             HHhCCEEEEEeceEC-CCCCHHHHHHHHHHH----------hhcCCCEEEEEEeCCcch----hhHHHHHHHHHHHCCCE
Confidence            346789999999999 556666777777653          157899999998876432    34677899999999998


Q ss_pred             eecc
Q 038595          192 EVLP  195 (534)
Q Consensus       192 rV~p  195 (534)
                      .+..
T Consensus       147 ~~~~  150 (191)
T 1t0i_A          147 VIGG  150 (191)
T ss_dssp             EEEE
T ss_pred             Ecce
Confidence            7753

>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*

Probab=98.76  E-value=3.3e-08  Score=92.05  Aligned_cols=116  Identities=12%  Similarity=0.102  Sum_probs=91.1

Q ss_pred             cEEEEEECcc--chHHHHHHHHHHHHhhCCCceEEECCCCCCc------------------cCcCCCCeEEEEeccCCCC
Q 038595           69 KGKLFFISQT--GTSKTLAKRLHALLTSNDLLFDLVDPQTYEP------------------EDLSKEALVLIVASSWEDG  128 (534)
Q Consensus        69 kVlI~YgSqT--GtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~------------------~dL~~~~lvIfv~STYg~G  128 (534)
                      +|+|+|+|..  |+|+++|+.+++.+. .|.+++++|+.+++.                  +++...+.+||++|+|+. 
T Consensus         8 kilii~gS~r~~g~t~~la~~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~-   85 (193)
T 1rtt_A            8 KVLGISGSLRSGSYNSAALQEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNY-   85 (193)
T ss_dssp             EEEEEESCCSTTCHHHHHHHHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETT-
T ss_pred             eEEEEECCCCCCChHHHHHHHHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcccccc-
Confidence            5999999985  999999999999998 789999999987532                  124467899999999995 


Q ss_pred             CCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595          129 KPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL  194 (534)
Q Consensus       129 ~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~  194 (534)
                      .+|..++.|++++....     + ..|+|+++++|+.+...++  ...+...+...|..+|++.+.
T Consensus        86 ~~p~~lK~~iD~~~~~~-----~-~~l~gK~~~~~~t~gg~~g--~~~~~~~l~~~l~~~g~~~~~  143 (193)
T 1rtt_A           86 SMAGVLKNAIDWASRPP-----E-QPFSGKPAAILGASAGRFG--TARAQYHLRQTLVFLDVHPLN  143 (193)
T ss_dssp             EECHHHHHHHHHHTCSS-----S-CTTTTCEEEEEEECSSTTT--THHHHHHHHHHHHHHTCEECC
T ss_pred             CcCHHHHHHHHHhcccc-----C-cccCCCeEEEEEeCCCCCc--cHHHHHHHHHHHHHcCCEEcC
Confidence            56667888999885421     1 3589999999998643332  135678899999999998776

>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}

Probab=98.66  E-value=3.2e-07  Score=90.55  Aligned_cols=119  Identities=16%  Similarity=0.058  Sum_probs=91.8

Q ss_pred             CcEEEEEECcc--chHHHHHHHHHHHHhhCCCceEEECCCCCCcc---------------CcCCCCeEEEEeccCCCCCC
Q 038595           68 NKGKLFFISQT--GTSKTLAKRLHALLTSNDLLFDLVDPQTYEPE---------------DLSKEALVLIVASSWEDGKP  130 (534)
Q Consensus        68 ~kVlI~YgSqT--GtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~---------------dL~~~~lvIfv~STYg~G~p  130 (534)
                      .+|+|+|||..  |+|+++|+.+.+.+.+.|++++++|+.+++..               .+...+.+||++|+|+ +.+
T Consensus        35 mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn-~si  113 (247)
T 2q62_A           35 PRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERH-GAM  113 (247)
T ss_dssp             CEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSS-SSC
T ss_pred             CeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCC-CCc
Confidence            46999999985  99999999999999999999999999987621               1335789999999999 556


Q ss_pred             chHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595          131 PEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL  194 (534)
Q Consensus       131 Pdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~  194 (534)
                      |...+.|++|+.....    ....++|+.+++++.+-...+   ..+...+...|..+|+..+-
T Consensus       114 pa~LKn~iD~l~~~~~----~~~~l~gK~v~~v~tsG~~gg---~~a~~~Lr~~l~~lg~~~v~  170 (247)
T 2q62_A          114 TGIMKAQIDWIPLSTG----SIRPTQGKTLAVMQVSGGSQS---FNAVNQMRILGRWMRMITIP  170 (247)
T ss_dssp             CHHHHHHHHTSCSCBT----TBCSSTTCEEEEEEECSSSCC---CHHHHHHHHHHHHTTCEECS
T ss_pred             cHHHHHHHHHhhhccC----cccccCCCEEEEEEeCCCccH---HHHHHHHHHHHHHCCCEEeC
Confidence            6678889888753211    124689999999998422222   24567888899999998663

>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}

Probab=98.61  E-value=1.2e-07  Score=99.81  Aligned_cols=61  Identities=13%  Similarity=0.330  Sum_probs=49.7

Q ss_pred             CceEEEeecCCCCCCcc--HHHHHHHHHhc-CC-cEEEEcCCC--C-----HHHHhhcCCCceEEEEeeCCCH
Q 038595          454 PRHCALSLVGEPIMYPE--INTLVDELHRR-RI-STFLVTNAQ--F-----PDKIKLLKPVTQLYVSVDAATK  515 (534)
Q Consensus       454 ~~h~alSl~GEPlLyp~--L~elI~~lk~~-gi-~~~LvTNGt--l-----pe~l~~L~~v~qlyvSlDA~~~  515 (534)
                      ++.+.|++ |||+|+|+  |.++++.+++. ++ .+.+.|||.  +     ++.++.|...+.++||+|+.++
T Consensus       163 i~~V~ltG-GEPll~~d~~L~~il~~l~~~~~v~~i~i~Tng~~~~p~~it~e~l~~L~~~~~v~Isl~~~~~  234 (416)
T 2a5h_A          163 VRDVLLSG-GDALLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNMLKKYHPVWLNTHFNHP  234 (416)
T ss_dssp             CCEEEEEE-SCTTSSCHHHHHHHHHHHHTSTTCCEEEEECSHHHHCGGGCCHHHHHHHGGGCSEEEEECCCSG
T ss_pred             CcEEEEEC-CCCCCCCHHHHHHHHHHHHhcCCccEEEEEecccccccccCCHHHHHHHHhcCcEEEEEecCCH
Confidence            35677887 99999998  99999999997 55 588999992  2     5677777666789999999776

>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1

Probab=98.57  E-value=1.6e-07  Score=96.46  Aligned_cols=113  Identities=13%  Similarity=0.226  Sum_probs=82.5

Q ss_pred             ccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCC
Q 038595          354 PSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPS  433 (534)
Q Consensus       354 p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (534)
                      ++..|+++|.||........+. -++..-+|++|++.+.+.     ... |                             
T Consensus        72 ~t~~C~~~C~yC~~~~~~~~~~-~~~~~~s~eei~~~~~~~-----~~~-g-----------------------------  115 (369)
T 1r30_A           72 KTGACPEDCKYCPQSSRYKTGL-EAERLMEVEQVLESARKA-----KAA-G-----------------------------  115 (369)
T ss_dssp             ECSCBSSCCSSCSCBTTSCTTC-CCCCCCCHHHHHHHHHHH-----HHT-T-----------------------------
T ss_pred             ECCCCcccCccCCCCCcCCCCC-cccccCCHHHHHHHHHHH-----HHc-C-----------------------------
Confidence            5778999999998764321111 122345788998876532     111 2                             


Q ss_pred             CCCCcccccccHHHhhhccCCceEEEeecC-CCCC--CccHHHHHHHHHhcCCcEEEEcCCCC-HHHHhhcCC--CceEE
Q 038595          434 NDGEEKEGGVTLERLNEGLTPRHCALSLVG-EPIM--YPEINTLVDELHRRRISTFLVTNAQF-PDKIKLLKP--VTQLY  507 (534)
Q Consensus       434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~G-EPlL--yp~L~elI~~lk~~gi~~~LvTNGtl-pe~l~~L~~--v~qly  507 (534)
                                          ++.+.|.+.| ||..  ++++.++++.+++.|+.+. +|||.+ ++.++.|.+  ++.+.
T Consensus       116 --------------------~~~i~~~gg~~~p~~~~~~~l~~ll~~ik~~g~~i~-~t~G~l~~e~l~~L~~aGvd~v~  174 (369)
T 1r30_A          116 --------------------STRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEAC-MTLGTLSESQAQRLANAGLDYYN  174 (369)
T ss_dssp             --------------------CSEEEEEECCSSCCTTTHHHHHHHHHHHHHTTSEEE-EECSSCCHHHHHHHHHHCCCEEE
T ss_pred             --------------------CcEEEEEeCCCCCCcCCHHHHHHHHHHHHHcCCeEE-EecCCCCHHHHHHHHHCCCCEEe
Confidence                                2345566653 5554  4689999999999998886 699997 788888875  89999


Q ss_pred             EEeeCCCHHHHHhhcCC
Q 038595          508 VSVDAATKDSLKAIDRP  524 (534)
Q Consensus       508 vSlDA~~~e~y~~I~rP  524 (534)
                      ++|++ +++.|+++++.
T Consensus       175 i~les-~~e~~~~i~~~  190 (369)
T 1r30_A          175 HNLDT-SPEFYGNIITT  190 (369)
T ss_dssp             CCCBS-CHHHHHHHCCS
T ss_pred             ecCcC-CHHHHHHhCCC
Confidence            99999 99999999985

>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}

Probab=98.57  E-value=3.6e-07  Score=86.00  Aligned_cols=127  Identities=13%  Similarity=0.136  Sum_probs=93.6

Q ss_pred             cEEEEEECc--cchHHHHHHHHHHHHhhCCCceEEECCCCCCc-----------------cCcCCCCeEEEEeccCCCCC
Q 038595           69 KGKLFFISQ--TGTSKTLAKRLHALLTSNDLLFDLVDPQTYEP-----------------EDLSKEALVLIVASSWEDGK  129 (534)
Q Consensus        69 kVlI~YgSq--TGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~-----------------~dL~~~~lvIfv~STYg~G~  129 (534)
                      +|+|++||.  .|+|.++|+.+.+.+. .|.+++++|+.+++.                 +.+...+.+||++|+|+ +.
T Consensus         4 kilii~gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y~-~~   81 (192)
T 3fvw_A            4 RILFIVGSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVYN-YA   81 (192)
T ss_dssp             EEEEEESCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCBT-TB
T ss_pred             EEEEEEcCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECcccc-cC
Confidence            599999998  7999999999999997 688999999987642                 11345789999999999 55


Q ss_pred             CchHHHHHHHHHHhhcCccc-ccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEee
Q 038595          130 PPEAAKFFMNWIDESANDFR-VGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGD  200 (534)
Q Consensus       130 pPdna~~Fle~L~e~~~DFR-v~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD  200 (534)
                      +|...+.|++++.....-|+ -+...|+|+++++++.+....   +..+...+...|..+|+..+-+...+.
T Consensus        82 ~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~g---~~~~~~~l~~~l~~~G~~~v~~~v~~~  150 (192)
T 3fvw_A           82 IPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGAS---PEEVFEDYRSLLPFIRMHLVDQLTGVP  150 (192)
T ss_dssp             CCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC------CCSHHHHHHHHHTTCEECCCCEEEC
T ss_pred             CCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCcc---hhHHHHHHHHHHHHcCCeeecceeecc
Confidence            66678999999865322111 012368999999998764421   234567788899999998776544443

>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}

Probab=98.57  E-value=3.5e-07  Score=85.79  Aligned_cols=149  Identities=13%  Similarity=0.102  Sum_probs=100.3

Q ss_pred             cEEEEEECcc----chHHHHHHHHHHHHhhCC--CceEEECCC--CCCcc------------------------------
Q 038595           69 KGKLFFISQT----GTSKTLAKRLHALLTSND--LLFDLVDPQ--TYEPE------------------------------  110 (534)
Q Consensus        69 kVlI~YgSqT----GtTE~lAe~La~~L~~~G--l~v~V~dL~--d~d~~------------------------------  110 (534)
                      +|+|+|+|..    |+|.++|+.+.+.+.+.|  .+++++||.  +.++.                              
T Consensus         3 kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   82 (208)
T 2hpv_A            3 KLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQKV   82 (208)
T ss_dssp             EEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHHHH
T ss_pred             eEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHhhH
Confidence            5899999987    999999999999999876  899999998  65421                              


Q ss_pred             --------CcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcccc----cccCCCCCeEEEEEecCcchHHHHHHHH
Q 038595          111 --------DLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRV----GSLLLSNCKFAVFGVGSKSYEKTFNMVA  178 (534)
Q Consensus       111 --------dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv----~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aA  178 (534)
                              ++...+.+||++|+|. +.+|..++.|++++.....-|+.    ....|+|+++++|......|+.. ..+.
T Consensus        83 ~~~~~~~~~l~~aD~iv~~~P~y~-~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~-~~~~  160 (208)
T 2hpv_A           83 ARFNELTDQFLSADKVVIANPMWN-LNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGK-DFAS  160 (208)
T ss_dssp             HHHHHHHHHHHHCSEEEEEEECBT-TBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSC-SHHH
T ss_pred             HHHHHHHHHHHhCCEEEEEecccc-CCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCc-chHH
Confidence                    1345689999999999 55666788999988643211221    12358999998886422233211 3345


Q ss_pred             HHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHH
Q 038595          179 KDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAIL  221 (534)
Q Consensus       179 K~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L  221 (534)
                      ..+...|.-+|++.+-+........+  +...++|.++..+.+
T Consensus       161 ~~l~~~~~~~G~~~~~~~~~~~~~~~--~~~~~~~l~~a~~~~  201 (208)
T 2hpv_A          161 QYIKAILNFIGVDQVDGLFIEGIDHF--PDRAEELLNTAMTKA  201 (208)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEECTTTC--GGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeeeEEEEccccCC--HHHHHHHHHHHHHHH
Confidence            66778888999987755443333322  234455555544433

>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6

Probab=98.53  E-value=1.9e-07  Score=85.27  Aligned_cols=122  Identities=14%  Similarity=0.071  Sum_probs=83.4

Q ss_pred             cEEEEEECcc--chHHHHHHHHHHHHhhCCCceEEECCCCCCc------------------------cCcCCCCeEEEEe
Q 038595           69 KGKLFFISQT--GTSKTLAKRLHALLTSNDLLFDLVDPQTYEP------------------------EDLSKEALVLIVA  122 (534)
Q Consensus        69 kVlI~YgSqT--GtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~------------------------~dL~~~~lvIfv~  122 (534)
                      +++|+|+|..  |+|+++|+.+++.+     .++++++.+.++                        +++...+.+||++
T Consensus         5 kilii~~S~r~~g~t~~la~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~~   79 (184)
T 1rli_A            5 KIAVINGGTRSGGNTDVLAEKAVQGF-----DAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILIFAT   79 (184)
T ss_dssp             CEEEEESSCSSCCHHHHHHHHHHTTT-----CCEEEEC-----------------------CHHHHHHHHHTCSEEEEEE
T ss_pred             EEEEEECCCCCCccHHHHHHHHHcCC-----eEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCEEEEEe
Confidence            4999999964  99999999999755     466666665432                        1245678999999


Q ss_pred             ccCCCCCCchHHHHHHHHHHhhcCccccc--ccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecce
Q 038595          123 SSWEDGKPPEAAKFFMNWIDESANDFRVG--SLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPV  196 (534)
Q Consensus       123 STYg~G~pPdna~~Fle~L~e~~~DFRv~--~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~pl  196 (534)
                      |+|. +.+|..++.|++++.....+|+..  ...|+|+++++|+.+.......+..+.+.+...|..+|++.+.+.
T Consensus        80 P~y~-~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~G~~~~~~~  154 (184)
T 1rli_A           80 PIYW-FGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMSFKGYV  154 (184)
T ss_dssp             ECBT-TBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             Cccc-cCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHcCCccceEE
Confidence            9999 556667889999876543333321  124789999999875332111234467788889999999877543

>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4

Probab=98.46  E-value=1.9e-06  Score=86.80  Aligned_cols=118  Identities=14%  Similarity=0.029  Sum_probs=91.5

Q ss_pred             CcEEEEEECcc--chHHHHHHHHHHHHhhCCCceEEECCCCCCccC----------------cCCCCeEEEEeccCCCCC
Q 038595           68 NKGKLFFISQT--GTSKTLAKRLHALLTSNDLLFDLVDPQTYEPED----------------LSKEALVLIVASSWEDGK  129 (534)
Q Consensus        68 ~kVlI~YgSqT--GtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d----------------L~~~~lvIfv~STYg~G~  129 (534)
                      .+|+|+|||..  |+|+.+|+.+++.+.+.|++++++|+.++++.+                +...+.+||++|+|+ +.
T Consensus        59 mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn-~s  137 (279)
T 2fzv_A           59 VRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERH-GQ  137 (279)
T ss_dssp             CEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEET-TE
T ss_pred             CEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccc-cC
Confidence            46999999986  999999999999999999999999999876211                234689999999999 66


Q ss_pred             CchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCcee
Q 038595          130 PPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEV  193 (534)
Q Consensus       130 pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV  193 (534)
                      +|..++.|++|+.....    ....++|+.+++++.+-...+   ..+...+...|..+|+..+
T Consensus       138 ipg~LKn~IDrl~~~~g----~~~~l~gK~v~lv~tsG~~gg---~~a~~~Lr~~l~~lg~~vv  194 (279)
T 2fzv_A          138 ITSVMKAQIDHLPLEMA----GIRPTQGRTLAVMQVSGGSQS---FNAVNTLRLLGRWMRMFTI  194 (279)
T ss_dssp             ECHHHHHHHHHSCSCBT----TBCSSTTCEEEEEEECSSSCC---CHHHHHHHHHHHHTTCEEC
T ss_pred             cCHHHHHHHHHHhhhcc----cccccCCCEEEEEEECCCccH---HHHHHHHHHHHHhcCcEEe
Confidence            66679999999854211    124689999999998432222   1456678888999998766

>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}

Probab=98.36  E-value=2.2e-07  Score=94.44  Aligned_cols=114  Identities=18%  Similarity=0.259  Sum_probs=81.8

Q ss_pred             eecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccC
Q 038595          351 EATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQ  430 (534)
Q Consensus       351 ~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~  430 (534)
                      .+..|..|+++|.||.....+ ....+  . -+|++|++.+.+.     .. .|                          
T Consensus        64 ~i~~t~~C~~~C~fC~~~~~~-~~~~~--~-ls~eei~~~~~~~-----~~-~G--------------------------  107 (350)
T 3t7v_A           64 FIYFSTYCKNQCSFCYYNCRN-EINRY--R-LTMEEIKETCKTL-----KG-AG--------------------------  107 (350)
T ss_dssp             EEEEECCCCCCCTTCTTCTTS-CCCCC--B-CCHHHHHHHHHHH-----TT-SC--------------------------
T ss_pred             eeecCCCcCCCCCcCCCcCcC-CCCce--e-CCHHHHHHHHHHH-----HH-CC--------------------------
Confidence            355578899999999876544 21222  2 4889999887542     11 12                          


Q ss_pred             CCCCCCCcccccccHHHhhhccCCceEEEeecCC-CCCC---ccHHHHHHHHHhc-CCcEEEEcCCCC-HHHHhhcCC--
Q 038595          431 IPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGE-PIMY---PEINTLVDELHRR-RISTFLVTNAQF-PDKIKLLKP--  502 (534)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GE-PlLy---p~L~elI~~lk~~-gi~~~LvTNGtl-pe~l~~L~~--  502 (534)
                                             ++.+.| ..|| |+++   .++.++++.+|+. ++.+.+ +.|.+ ++.++.|.+  
T Consensus       108 -----------------------~~~i~l-~gGe~p~~~~~~~~~~~l~~~ik~~~~i~i~~-s~g~~~~e~l~~L~~aG  162 (350)
T 3t7v_A          108 -----------------------FHMVDL-TMGEDPYYYEDPNRFVELVQIVKEELGLPIMI-SPGLMDNATLLKAREKG  162 (350)
T ss_dssp             -----------------------CSEEEE-EECCCHHHHHSTHHHHHHHHHHHHHHCSCEEE-ECSSCCHHHHHHHHHTT
T ss_pred             -----------------------CCEEEE-eeCCCCccccCHHHHHHHHHHHHhhcCceEEE-eCCCCCHHHHHHHHHcC
Confidence                                   244555 3477 8875   6889999999865 877754 45544 788888875  


Q ss_pred             CceEEEEeeCCCHHHHHhhcCCC
Q 038595          503 VTQLYVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       503 v~qlyvSlDA~~~e~y~~I~rP~  525 (534)
                      ++.+.+++++.+++.|++|++..
T Consensus       163 ~~~i~i~lEt~~~~~~~~i~~~~  185 (350)
T 3t7v_A          163 ANFLALYQETYDTELYRKLRVGQ  185 (350)
T ss_dssp             EEEEECCCBCSCHHHHHHHSTTC
T ss_pred             CCEEEEeeecCCHHHHHHhCCCC
Confidence            78899999999999999999753

>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*

Probab=98.34  E-value=2.4e-06  Score=80.80  Aligned_cols=151  Identities=17%  Similarity=0.113  Sum_probs=102.1

Q ss_pred             cEEEEEECccc---hHHHHHHHHHHHHhhC--CCceEEECCCCCCcc---------------------------------
Q 038595           69 KGKLFFISQTG---TSKTLAKRLHALLTSN--DLLFDLVDPQTYEPE---------------------------------  110 (534)
Q Consensus        69 kVlI~YgSqTG---tTE~lAe~La~~L~~~--Gl~v~V~dL~d~d~~---------------------------------  110 (534)
                      +|+|+|+|..+   +|.++|+.+.+.+++.  |.+++++||.+.++.                                 
T Consensus         3 kiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (212)
T 3r6w_A            3 RILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLV   82 (212)
T ss_dssp             CEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHHHH
Confidence            59999999765   6999999999999877  899999999765311                                 


Q ss_pred             -CcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCccccc--------ccCCCCCeEEEEEe-cC-cchHH----HHH
Q 038595          111 -DLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVG--------SLLLSNCKFAVFGV-GS-KSYEK----TFN  175 (534)
Q Consensus       111 -dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~--------~~~Lkgl~yAVFGL-GD-s~Y~e----~Fc  175 (534)
                       ++...+.+||++|.|. +.+|...+.|++++.....-|+..        ...|+|+++.++.. |. ..|+.    .+.
T Consensus        83 ~~l~~AD~iV~~~P~y~-~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~~~  161 (212)
T 3r6w_A           83 GELFDSDLLVISTPMYN-FSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQAMN  161 (212)
T ss_dssp             HHHHHCSEEEEEEECBT-TBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGGGC
T ss_pred             HHHHhCCEEEEEcCccc-ccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCchh
Confidence             1234689999999999 556667899999985433223322        34689998887764 53 22321    123


Q ss_pred             HHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHH
Q 038595          176 MVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILK  222 (534)
Q Consensus       176 ~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~  222 (534)
                      .+...+...|.-+|.+.+-.........  .++..++|.++..+.+.
T Consensus       162 ~~~~~l~~~l~~~G~~~~~~v~~~g~~~--~~~~~~~~l~~a~~~~~  206 (212)
T 3r6w_A          162 HADPWLRTALGFIGIDEVTVVAAEGEES--GGRSFEDSCDEAEQRLL  206 (212)
T ss_dssp             CSHHHHHHHHHHHTCCEEEEEEECCTTT--CHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHCCCceeEEEEEecccC--CHHHHHHHHHHHHHHHH
Confidence            3456678888889998884443333322  23456667666655543

>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*

Probab=98.19  E-value=6.2e-06  Score=78.43  Aligned_cols=116  Identities=15%  Similarity=0.166  Sum_probs=88.8

Q ss_pred             cEEEEEEC--ccchHHHHHHHHHHHHhhCCCceE-EECCCCCCc-----------cC-------cCCCCeEEEEeccCCC
Q 038595           69 KGKLFFIS--QTGTSKTLAKRLHALLTSNDLLFD-LVDPQTYEP-----------ED-------LSKEALVLIVASSWED  127 (534)
Q Consensus        69 kVlI~YgS--qTGtTE~lAe~La~~L~~~Gl~v~-V~dL~d~d~-----------~d-------L~~~~lvIfv~STYg~  127 (534)
                      +|+|++||  ..++|+++|+.+.+.+. .|.+++ ++|+.++..           ++       +...+.+||++|.|+ 
T Consensus         8 kIl~I~GS~r~~s~t~~la~~~~~~~~-~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP~Y~-   85 (199)
T 4hs4_A            8 HFVTLLGSLRKASFNAAVARALPEIAP-EGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEYN-   85 (199)
T ss_dssp             EEEEEECCCSTTCHHHHHHHHHHHHCC-TTEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEECCBT-
T ss_pred             EEEEEEcCCCCCChHHHHHHHHHHHcc-CCCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcCccC-
Confidence            59999999  66999999999999885 588898 888876532           11       235789999999999 


Q ss_pred             CCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595          128 GKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL  194 (534)
Q Consensus       128 G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~  194 (534)
                      +.+|.-.+.|++|+..      .+...|+|+.+++++.+-..++ . -.+...+...|..+|+..+-
T Consensus        86 ~s~p~~LK~~iD~~~~------~~~~~l~gK~v~~v~tsgg~~g-~-~~a~~~Lr~il~~lg~~~v~  144 (199)
T 4hs4_A           86 YSVPGVLKNAIDWLSR------VSPQPLAGKPVALVTASPGMIG-G-ARAQNHLRQSLVFLDAYVLN  144 (199)
T ss_dssp             TBCCHHHHHHHHHHTT------SSSCTTTTCEEEEEEECSSSSC-S-HHHHHHHHHHHHHTTCEECC
T ss_pred             CCcCHHHHHHHHHhcc------cCCcccCCCEEEEEEeCCCCcc-c-HHHHHHHHHHHHHcCCEEcC
Confidence            5566678999999864      1245799999999998533332 1 13556788889999998774

>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*

Probab=98.19  E-value=1.6e-05  Score=74.86  Aligned_cols=154  Identities=10%  Similarity=0.020  Sum_probs=105.4

Q ss_pred             cEEEEEECc--cchHHHHHHHHHHHHhhCCCceEEECCCCCCcc------------------C-------cCCCCeEEEE
Q 038595           69 KGKLFFISQ--TGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPE------------------D-------LSKEALVLIV  121 (534)
Q Consensus        69 kVlI~YgSq--TGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~------------------d-------L~~~~lvIfv  121 (534)
                      +|+|++||.  .+++.++|+.+.+.+ +.|.+++++||.+.+++                  +       +...+.+||+
T Consensus         2 kiLiI~gspr~~s~t~~l~~~~~~~~-~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~   80 (196)
T 3lcm_A            2 KILIVYTHPNPTSFNAEILKQVQTNL-SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIFI   80 (196)
T ss_dssp             EEEEEECCSCTTSHHHHHHHHHHHHS-CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEeCCCCCChHHHHHHHHHHHh-cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEEE
Confidence            489999996  457899999999999 88999999999866431                  1       2246899999


Q ss_pred             eccCCCCCCchHHHHHHHHHHhhcCccccc----ccCCCCCeEEEEEecCcc--hHHH-HHHHHHHHHHHHHHcCCceec
Q 038595          122 ASSWEDGKPPEAAKFFMNWIDESANDFRVG----SLLLSNCKFAVFGVGSKS--YEKT-FNMVAKDLSKKMRELGAGEVL  194 (534)
Q Consensus       122 ~STYg~G~pPdna~~Fle~L~e~~~DFRv~----~~~Lkgl~yAVFGLGDs~--Y~e~-Fc~aAK~LDk~L~kLGA~rV~  194 (534)
                      +|.|. +.+|.-.+.|++++-....-|+.+    ...|+|+++.|+......  |... +......+...|.-+|++.+-
T Consensus        81 ~P~y~-~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~~~~l~~~l~~~G~~~~~  159 (196)
T 3lcm_A           81 FPIWW-SGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYGKVLKKQILKPCAISPVK  159 (196)
T ss_dssp             EECBT-TBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTTHHHHHHTTGGGTCCCEE
T ss_pred             Cchhh-ccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCHHHHHHHHHHhcCCceee
Confidence            99999 556667888998885432222222    246899999888764443  4211 111124456667778998776


Q ss_pred             ceEEeeCCCCCcHHHHHHHHHHHHHHHHhcC
Q 038595          195 PVVEGDVDGGELDVVFEDWSKRVVAILKSGG  225 (534)
Q Consensus       195 plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~  225 (534)
                      +......... .++..++|.+++.+......
T Consensus       160 ~~~~~g~~~~-~~~~~~~~l~~~~~~~~~~~  189 (196)
T 3lcm_A          160 LTELTSIEKI-SDDERQKLLHKVAQITRNIL  189 (196)
T ss_dssp             EEEECSTTTS-CHHHHHHHHHHHHHHHHTCC
T ss_pred             EEEEeCcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence            6555554432 35678889988888776543

>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}

Probab=97.45  E-value=2.6e-07  Score=87.93  Aligned_cols=117  Identities=13%  Similarity=0.124  Sum_probs=88.4

Q ss_pred             cEEEEEECcc--chHHHHHHHHHHHHhhCCCceEEE-CCCCCCc------------------cCcCCCCeEEEEeccCCC
Q 038595           69 KGKLFFISQT--GTSKTLAKRLHALLTSNDLLFDLV-DPQTYEP------------------EDLSKEALVLIVASSWED  127 (534)
Q Consensus        69 kVlI~YgSqT--GtTE~lAe~La~~L~~~Gl~v~V~-dL~d~d~------------------~dL~~~~lvIfv~STYg~  127 (534)
                      +|+|+|||..  |+|+++|+.+.+.+.+ |++++++ |+.++..                  +.+...+.+||++|+|+ 
T Consensus         8 kIliI~gS~r~~s~t~~la~~~~~~~~~-g~~v~~i~dl~~lp~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~-   85 (199)
T 3s2y_A            8 HFVTLLGSLRKASFNAAVARALPEIAPE-GIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEYN-   85 (199)
Confidence            5999999986  8999999999999987 8999999 8876321                  12345789999999999 


Q ss_pred             CCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecc
Q 038595          128 GKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLP  195 (534)
Q Consensus       128 G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~p  195 (534)
                      +.+|...+.|++|+....      ...++|+.+++|+.+...++  ...+...+...|..+|+..+-.
T Consensus        86 ~s~p~~lK~~iD~l~~~~------~~~l~gK~v~~v~tsgg~~g--~~~a~~~Lr~~l~~lg~~~v~~  145 (199)
T 3s2y_A           86 YSVPGVLKNAIDWLSRVS------PQPLAGKPVALVTASPGMIG--GARAQYHLRQSLVFLDAYVLNR  145 (199)
Confidence            556667899999986431      11689999999996433232  2456677888888889876643

>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A

Probab=98.09  E-value=2.3e-05  Score=74.35  Aligned_cols=119  Identities=11%  Similarity=0.122  Sum_probs=86.9

Q ss_pred             cEEEEEECcc--chHHHHHHHHHH----HHhhC--CCceEEECCCCCCcc------------C-------cCCCCeEEEE
Q 038595           69 KGKLFFISQT--GTSKTLAKRLHA----LLTSN--DLLFDLVDPQTYEPE------------D-------LSKEALVLIV  121 (534)
Q Consensus        69 kVlI~YgSqT--GtTE~lAe~La~----~L~~~--Gl~v~V~dL~d~d~~------------d-------L~~~~lvIfv  121 (534)
                      +|+++.||..  ++|.++|+.+.+    .|.+.  |.+++++||.++++.            +       +...+.+||+
T Consensus        13 ~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ivi~   92 (191)
T 3k1y_A           13 TLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGLVVA   92 (191)
T ss_dssp             EEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEEEEE
T ss_pred             eEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEEEEE
Confidence            6999999975  889999999999    66666  789999999876521            1       1246899999


Q ss_pred             eccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEe
Q 038595          122 ASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEG  199 (534)
Q Consensus       122 ~STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~g  199 (534)
                      +|+|+ +.+|..++.|++|+..         ..|+|+..++++.|...-  .....-..+...|..+|+..+-+...+
T Consensus        93 sP~Y~-~~~~~~lK~~iD~~~~---------~~l~gK~~~~v~t~G~~~--~~~~~~~~L~~il~~lg~~vv~~~v~~  158 (191)
T 3k1y_A           93 TPVFK-ASYTGLFKMFFDILDT---------DALTGMPTIIAATAGSAR--HSLVLDYALRPLLSYMRAVVVPTGVFA  158 (191)
T ss_dssp             EECBT-TBSCHHHHHHHHHSCT---------TTTTTCEEEEEEEESSST--TTTHHHHTHHHHHHHTTCEECSCCEEE
T ss_pred             cCccC-CcCcHHHHHHHHHhhh---------hhcCCCEEEEEEeCCCcc--hhhHHHHHHHHHHHHCCCEEcCcEEEe
Confidence            99999 5566668889888742         468999999998864322  222222337788899999877544433

>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*

Probab=98.05  E-value=0.00012  Score=69.58  Aligned_cols=150  Identities=16%  Similarity=0.154  Sum_probs=99.0

Q ss_pred             CcEEEEEECcc------chHHHHHHHHHHHHhhCCCceEEECCCC-CCcc----CcCCCCeEEEEeccCCCCCCchHHHH
Q 038595           68 NKGKLFFISQT------GTSKTLAKRLHALLTSNDLLFDLVDPQT-YEPE----DLSKEALVLIVASSWEDGKPPEAAKF  136 (534)
Q Consensus        68 ~kVlI~YgSqT------GtTE~lAe~La~~L~~~Gl~v~V~dL~d-~d~~----dL~~~~lvIfv~STYg~G~pPdna~~  136 (534)
                      .+|+|+.||--      +++.++|+.+.+.+.+.|.+++++||.+ .+..    .+...+.+||++|.|. +.+|.-.+.
T Consensus        13 ~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~~P~y~-~s~pa~LK~   91 (204)
T 2amj_A           13 SNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQMPGWW-MGAPWTVKK   91 (204)
T ss_dssp             CEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEEEECBT-TBCCHHHHH
T ss_pred             cCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEECCccc-cCCCHHHHH
Confidence            46999999988      8999999999999998899999999985 2222    2456799999999999 556666888


Q ss_pred             HHHHHHhhc------Cccc--------c-cccCCCCCeEEEEEecCcchHHHH------------HHHHHHHHHHHHHcC
Q 038595          137 FMNWIDESA------NDFR--------V-GSLLLSNCKFAVFGVGSKSYEKTF------------NMVAKDLSKKMRELG  189 (534)
Q Consensus       137 Fle~L~e~~------~DFR--------v-~~~~Lkgl~yAVFGLGDs~Y~e~F------------c~aAK~LDk~L~kLG  189 (534)
                      |++.+....      .|.|        . ....|+|++++++........ .|            ......+...|.-+|
T Consensus        92 ~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g~~~~-~y~~~g~~~~~~~~~~~l~~l~~~l~~~G  170 (204)
T 2amj_A           92 YIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPME-AFTEKDQFFHGVGVDGVYLPFHKANQFLG  170 (204)
T ss_dssp             HHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECSSCTH-HHHCTTSSSCSCCHHHHTHHHHHHHHHTT
T ss_pred             HHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCCCChH-HHccCcccccCCCHHHHHHHHHHHHHHcC
Confidence            888764321      1111        1 124689999998876433211 22            122233677888899


Q ss_pred             CceecceEEeeCCCC-CcHHHHHHHHHHHHH
Q 038595          190 AGEVLPVVEGDVDGG-ELDVVFEDWSKRVVA  219 (534)
Q Consensus       190 A~rV~plg~gD~~~g-~~e~~f~eW~~~L~~  219 (534)
                      ++.+-+....+.... ..++.++++.+.+..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  201 (204)
T 2amj_A          171 MEPLPTFIANDVIKMPDVPRYTEEYRKHLVE  201 (204)
T ss_dssp             CEECCCEEECSTTTSCCTTTHHHHHHHHHHH
T ss_pred             CeecceEEEeCCCCcHHHHHHHHHHHHHHHH
Confidence            988765555444322 344555555554433

>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*

Probab=98.04  E-value=3e-05  Score=76.91  Aligned_cols=154  Identities=10%  Similarity=-0.024  Sum_probs=100.3

Q ss_pred             cEEEEEECcc--chHHHHHHHHHHHHhhCCCceEEECCCCCCc-----------------------------------cC
Q 038595           69 KGKLFFISQT--GTSKTLAKRLHALLTSNDLLFDLVDPQTYEP-----------------------------------ED  111 (534)
Q Consensus        69 kVlI~YgSqT--GtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~-----------------------------------~d  111 (534)
                      +|+|+|+|..  |+|..+|+.+.+.|.+.|.+++++||.+.++                                   ++
T Consensus         4 kiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd   83 (273)
T 1d4a_A            4 RALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSPD   83 (273)
T ss_dssp             EEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCBCHH
T ss_pred             EEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhcccCcHH
Confidence            5999999986  6899999999999999999999999987642                                   11


Q ss_pred             -------cCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcccc----cccCCCCCeEEEEEe-cCcc--hHH-HHH-
Q 038595          112 -------LSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRV----GSLLLSNCKFAVFGV-GSKS--YEK-TFN-  175 (534)
Q Consensus       112 -------L~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv----~~~~Lkgl~yAVFGL-GDs~--Y~e-~Fc-  175 (534)
                             |...+.+||++|.|. +.+|.-.+.|++++.....-|+.    +...|+|+++.++.. |...  |.. .+. 
T Consensus        84 ~~~~~~~l~~AD~IV~~~P~y~-~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~~~~y~~~g~~~  162 (273)
T 1d4a_A           84 IVAEQKKLEAADLVIFQFPLQW-FGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHG  162 (273)
T ss_dssp             HHHHHHHHHHCSEEEEEEECBT-TBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSCTGGGSTTBTTC
T ss_pred             HHHHHHHHHhCCEEEEECchhh-ccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCChHHhcccccCC
Confidence                   334688999999999 55666688888887543222332    235689999888865 3321  310 011 


Q ss_pred             ---HHHHHHH-HHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhc
Q 038595          176 ---MVAKDLS-KKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSG  224 (534)
Q Consensus       176 ---~aAK~LD-k~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~  224 (534)
                         .....+. ..|.-+|++.+-+......... .+...++|.++..+.+...
T Consensus       163 ~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~l~~l  214 (273)
T 1d4a_A          163 DMNVILWPIQSGILHFCGFQVLEPQLTYSIGHT-PADARIQILEGWKKRLENI  214 (273)
T ss_dssp             CHHHHHHHHHTTTTGGGTCEECCCEEETTGGGS-CHHHHHHHHHHHHHHHTTG
T ss_pred             CHHHHHHHHHHHHHHhCCCeeeeEEEEeccccC-CHHHHHHHHHHHHHHHHHH
Confidence               1122222 2456678887755444333221 2345666777766666544

>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}

Probab=98.03  E-value=7e-05  Score=72.86  Aligned_cols=154  Identities=13%  Similarity=0.084  Sum_probs=104.9

Q ss_pred             CcEEEEEECc------cchHHHHHHHHHHHHhhCCCceEEECCCC-CCcc----CcCCCCeEEEEeccCCCCCCchHHHH
Q 038595           68 NKGKLFFISQ------TGTSKTLAKRLHALLTSNDLLFDLVDPQT-YEPE----DLSKEALVLIVASSWEDGKPPEAAKF  136 (534)
Q Consensus        68 ~kVlI~YgSq------TGtTE~lAe~La~~L~~~Gl~v~V~dL~d-~d~~----dL~~~~lvIfv~STYg~G~pPdna~~  136 (534)
                      .+|+|++||.      .+.+..+|+.+.+.+.+.|.+++++|+.+ +|+.    .+...+.+||++|.|. +.+|.-.+.
T Consensus        26 ~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~~P~y~-~~~p~~lK~  104 (218)
T 3rpe_A           26 SNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQMPAWW-MGEPWILKK  104 (218)
T ss_dssp             CCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEEEECBT-TBCCHHHHH
T ss_pred             cceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEEECChHh-ccCCHHHHH
Confidence            3599999997      36889999999999999999999999974 3322    2456799999999999 555666888


Q ss_pred             HHHHHHhhcCcccc--------------c-ccCCCCCeEEEEEe-cCcc--hHH---HHHH-----HHHHHHHHHHHcCC
Q 038595          137 FMNWIDESANDFRV--------------G-SLLLSNCKFAVFGV-GSKS--YEK---TFNM-----VAKDLSKKMRELGA  190 (534)
Q Consensus       137 Fle~L~e~~~DFRv--------------~-~~~Lkgl~yAVFGL-GDs~--Y~e---~Fc~-----aAK~LDk~L~kLGA  190 (534)
                      |++.+-....-|+.              + ...|+|+++.|+-. |...  |.+   .|+.     ...-+...|.-+|.
T Consensus       105 ~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G~p~~~y~~~g~~~~g~~~~~~l~p~~~~l~f~G~  184 (218)
T 3rpe_A          105 YIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQFFHGVGVDGVYLPFHKANQFLGM  184 (218)
T ss_dssp             HHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECSSCTHHHHCTTSTTTTCHHHHHTHHHHHHHHHTTC
T ss_pred             HHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCCCChHhhcccccccccCCHHHHHHHHHHHHHhCCC
Confidence            88887544221211              1 23579998877654 4332  311   0222     22224667778899


Q ss_pred             ceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhcC
Q 038595          191 GEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGG  225 (534)
Q Consensus       191 ~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~  225 (534)
                      +.+-+....+...   +.++++|.+++.+.|....
T Consensus       185 ~~l~~~~~~g~~~---~~~~~~~~~~~~~~L~~~~  216 (218)
T 3rpe_A          185 KPLPTFMCNDVIK---QPDIEGDIARYRQHLAENV  216 (218)
T ss_dssp             EECCCEEECSTTT---SCCHHHHHHHHHHHHHHHT
T ss_pred             EEeceEEEeCCCC---hHHHHHHHHHHHHHHHHhc
Confidence            9887766666543   2357778887777776543

>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}

Probab=98.02  E-value=1.5e-05  Score=75.89  Aligned_cols=156  Identities=12%  Similarity=0.072  Sum_probs=100.3

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCcc----------CcCCCCeEEEEeccCCCCCCchHHHHHH
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPE----------DLSKEALVLIVASSWEDGKPPEAAKFFM  138 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~----------dL~~~~lvIfv~STYg~G~pPdna~~Fl  138 (534)
                      +|+|++||..++...+++.+.+.+++.|.+++++||.+..++          .+...+.+||++|.|. +.+|.-.+.|+
T Consensus         3 kiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y~-~~~pa~lK~~i   81 (192)
T 3f2v_A            3 KTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIYW-FNCPPLLKQWL   81 (192)
T ss_dssp             CEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECBT-TBCCHHHHHHH
T ss_pred             EEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChhh-cCCCHHHHHHH
Confidence            599999999887668999999999988999999999754321          2456789999999999 55566688888


Q ss_pred             HHHHhhcCcccccccCCCCCeEEEEEe-cCcc--hHH------HHHHHHHHHHHHHHHcCCceecceEEeeCCCC-----
Q 038595          139 NWIDESANDFRVGSLLLSNCKFAVFGV-GSKS--YEK------TFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-----  204 (534)
Q Consensus       139 e~L~e~~~DFRv~~~~Lkgl~yAVFGL-GDs~--Y~e------~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-----  204 (534)
                      +++-....-|.-....|+|+++.++.. |...  |..      .+.....-+...|.-+|.+.+-+....+....     
T Consensus        82 Drv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~~~~~~~l~pl~~~~~f~G~~~~~~~~~~g~~~~~~~~~  161 (192)
T 3f2v_A           82 DEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCSVAEVLRPFELTAKYCNADYRPPFTFHTIDSNAGYSE  161 (192)
T ss_dssp             HHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSCSCHHHHHHHHHHHHHHTTCEECCCEEEEC-------CH
T ss_pred             HHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccccCHHHHHHHHHHHHHhCCCeEeeeEEEecccccccccc
Confidence            876432111111124789999888864 4332  310      12223334667788899988876655554320     


Q ss_pred             CcHHHHHHHHHHHHHHHHhcC
Q 038595          205 ELDVVFEDWSKRVVAILKSGG  225 (534)
Q Consensus       205 ~~e~~f~eW~~~L~~~L~~~~  225 (534)
                      ..++++++..++..+.|....
T Consensus       162 ~~~~~~~~~~~~y~~~l~~~~  182 (192)
T 3f2v_A          162 AARQEVERSARDYLAWLDALQ  182 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHHH
Confidence            123455555555555554443

>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}

Probab=97.93  E-value=0.00015  Score=68.80  Aligned_cols=116  Identities=17%  Similarity=0.235  Sum_probs=84.4

Q ss_pred             cEEEEEECc--cchHHHHHHHHHHHHhhCCCceEEECCCCCCc--cC---------------cCCCCeEEEEeccCCCCC
Q 038595           69 KGKLFFISQ--TGTSKTLAKRLHALLTSNDLLFDLVDPQTYEP--ED---------------LSKEALVLIVASSWEDGK  129 (534)
Q Consensus        69 kVlI~YgSq--TGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~--~d---------------L~~~~lvIfv~STYg~G~  129 (534)
                      +|.|+.||.  ...+.++|+.+++.+. .+++++++|+.++..  .|               +...+.+||++|.|+ |.
T Consensus         4 ~I~vi~GS~R~~S~~~~la~~~~~~~~-~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeYn-~s   81 (190)
T 3u7r_A            4 TVAVMVGSLRKDSLNHKLMKVLQKLAE-GRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEYN-RS   81 (190)
T ss_dssp             EEEEEESCCSTTCHHHHHHHHHHHHHT-TTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCBT-TB
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHhcc-CCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhhc-cc
Confidence            488999995  4567899999887664 588999999887542  11               234689999999999 66


Q ss_pred             CchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCcee
Q 038595          130 PPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEV  193 (534)
Q Consensus       130 pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV  193 (534)
                      .|.-.+.|++||...     .+...+.|+.+++++.+-...+ . -.+...+...|..+|+..+
T Consensus        82 ~pg~LKn~iDwlsr~-----~~~~~~~gKpv~~v~~S~G~~G-g-~~a~~~Lr~vl~~lg~~v~  138 (190)
T 3u7r_A           82 YPGMIKNAIDWATRP-----YGQNSWKGKPAAVIGTSPGVIG-A-ALAQARLKNDLLHVGTVMM  138 (190)
T ss_dssp             CCHHHHHHHHHHHCS-----TTCCTTTTCEEEEEEEESSTTT-T-HHHHHHHHHHHHTTTCEEC
T ss_pred             CCHHHHHHHHHhccc-----ccCCccCCCEEEEEEeCCchhh-H-HHHHHHHHHHHHHcCCEEc
Confidence            777899999999642     2245799999999986333332 1 2345567777888998665

>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}

Probab=97.93  E-value=3.4e-05  Score=73.56  Aligned_cols=150  Identities=15%  Similarity=0.143  Sum_probs=102.2

Q ss_pred             cEEEEEECcc----chHHHHHHHHHHHHhhC--CCceEEECCCCCCcc--------------------------------
Q 038595           69 KGKLFFISQT----GTSKTLAKRLHALLTSN--DLLFDLVDPQTYEPE--------------------------------  110 (534)
Q Consensus        69 kVlI~YgSqT----GtTE~lAe~La~~L~~~--Gl~v~V~dL~d~d~~--------------------------------  110 (534)
                      +|+|++||-.    ++|.++|+.+.+.+.+.  |.+++++||.+.++-                                
T Consensus         6 kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (211)
T 3p0r_A            6 KVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAVADK   85 (211)
T ss_dssp             EEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHHHHHH
Confidence            5999999955    88999999999999876  899999999754320                                


Q ss_pred             ---CcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCccccc----ccCCCCCeEEEEEe-cCcchHH----HHHHHH
Q 038595          111 ---DLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVG----SLLLSNCKFAVFGV-GSKSYEK----TFNMVA  178 (534)
Q Consensus       111 ---dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~----~~~Lkgl~yAVFGL-GDs~Y~e----~Fc~aA  178 (534)
                         .+...+.+||++|.|. +.+|.-.+.|++++.....-|+..    ...|+|+++.++.. |.. |+.    .|..+.
T Consensus        86 ~~~~~~~aD~iv~~~P~y~-~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~-~~~~~~~~~~~~~  163 (211)
T 3p0r_A           86 YLNQFLEADKVVFGFPLWN-LTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGV-YSEGPAAEVEMAV  163 (211)
T ss_dssp             HHHHHHHCSEEEEEEECBT-TBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSC-CSSSTTGGGCBSH
T ss_pred             HHHHHHhCCEEEEEcChhc-ccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCC-CCCCCccchhHHH
Confidence               0234689999999999 556667899999885443333322    23588998888764 433 321    133345


Q ss_pred             HHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHH
Q 038595          179 KDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILK  222 (534)
Q Consensus       179 K~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~  222 (534)
                      ..+...|.-+|++.+........+..  .+.-++|.++..+.+.
T Consensus       164 ~~l~~~l~~~G~~~v~~i~~~g~~~~--~~~~~~~l~~a~~~~~  205 (211)
T 3p0r_A          164 KYVASMMGFFGATNMETVVIEGHNQF--PDKAEEIITAGLEEAA  205 (211)
T ss_dssp             HHHHHHHHHTTCCSCEEEEEECTTTS--GGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeeeEEEEeccccC--chHHHHHHHHHHHHHH
Confidence            66788888899988765544333322  2245667666655544

>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...

Probab=97.90  E-value=6e-05  Score=73.16  Aligned_cols=155  Identities=15%  Similarity=0.055  Sum_probs=103.8

Q ss_pred             cEEEEEECcc--chHHHHHHHHHHHHhhCCCceEEECCCCCCc-----------------------------------cC
Q 038595           69 KGKLFFISQT--GTSKTLAKRLHALLTSNDLLFDLVDPQTYEP-----------------------------------ED  111 (534)
Q Consensus        69 kVlI~YgSqT--GtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~-----------------------------------~d  111 (534)
                      +|+|++||..  +++..+|+.+.+.|.+.|.+++++||.+.++                                   ++
T Consensus         3 kiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dd   82 (228)
T 3tem_A            3 KVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASD   82 (228)
T ss_dssp             EEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBCHH
T ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCcHH
Confidence            5999999976  4599999999999998899999999987531                                   11


Q ss_pred             -------cCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcccc----cccCCCCCeEEEEEe-cCc--chHH-HHHH
Q 038595          112 -------LSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRV----GSLLLSNCKFAVFGV-GSK--SYEK-TFNM  176 (534)
Q Consensus       112 -------L~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv----~~~~Lkgl~yAVFGL-GDs--~Y~e-~Fc~  176 (534)
                             +...+.+||++|.|. +.+|.-++.|++++-....-|+.    ....|+|+++.++.. |..  .|.. .++.
T Consensus        83 ~~~~~~~l~~aD~iv~~~P~y~-~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~~~~y~~~g~~~  161 (228)
T 3tem_A           83 ITDEQKKVREADLVIFQFPLYW-FSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNG  161 (228)
T ss_dssp             HHHHHHHHHHCSEEEEEEECBT-TBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTTTTSTTSTTC
T ss_pred             HHHHHHHHHhCCEEEEECChhh-cccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCCHHHHhhccccC
Confidence                   224689999999999 55666788898887543222222    135689999888754 433  2421 1222


Q ss_pred             HHHH----HHH-HHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhcC
Q 038595          177 VAKD----LSK-KMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGG  225 (534)
Q Consensus       177 aAK~----LDk-~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~  225 (534)
                      ....    +.+ .|.-+|.+.+-+....+.... .++..++|.+++.+.|....
T Consensus       162 ~~~~~l~p~~~~~~~~~G~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~l~~~~  214 (228)
T 3tem_A          162 DSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIA-SEEERKGMVAAWSQRLQTIW  214 (228)
T ss_dssp             CHHHHHHHHHCCCCCTTTCEECCCEEECCTTTS-CHHHHHHHHHHHHHHHHTGG
T ss_pred             CHHHHHHHHHHHHHHhCCceEcCeEEEcCCCCC-CHHHHHHHHHHHHHHHHhhc
Confidence            2222    211 233468777766666655432 35678899999888887654

>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}

Probab=97.89  E-value=3.6e-05  Score=72.71  Aligned_cols=115  Identities=12%  Similarity=0.078  Sum_probs=84.9

Q ss_pred             cEEEEEECc--cchHHHHHHHHHHHHhhCCCceE-EECCCCCCc------------cC-------cCCCCeEEEEeccCC
Q 038595           69 KGKLFFISQ--TGTSKTLAKRLHALLTSNDLLFD-LVDPQTYEP------------ED-------LSKEALVLIVASSWE  126 (534)
Q Consensus        69 kVlI~YgSq--TGtTE~lAe~La~~L~~~Gl~v~-V~dL~d~d~------------~d-------L~~~~lvIfv~STYg  126 (534)
                      +|++++||.  .+++.++|+.+.+.+ ..|++++ ++|+.++..            ++       +...+.+||++|+|+
T Consensus         6 kil~I~GS~r~~s~t~~l~~~~~~~~-~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~~sP~y~   84 (193)
T 3svl_A            6 QVVTLLGSLRKGSFNGMVARTLPKIA-PASMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVTPEYN   84 (193)
T ss_dssp             EEEEEECCCSTTCHHHHHHHHGGGTS-CTTEEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEEEECCBT
T ss_pred             EEEEEEccCCCCCHHHHHHHHHHHHc-cCCCEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCCEEEEEecccC
Confidence            599999995  588899999886644 5688898 889987642            11       234689999999999


Q ss_pred             CCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCcee
Q 038595          127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEV  193 (534)
Q Consensus       127 ~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV  193 (534)
                       +.+|...+.|++|+...      +...++|+.+++++..-..++ . ..+...+...|..+|+..+
T Consensus        85 -~~~~~~lK~~iD~~~~~------~~~~~~gK~~~~~~~s~g~~g-g-~~a~~~Lr~~l~~lg~~v~  142 (193)
T 3svl_A           85 -YSVPGGLKNAIDWLSRL------PDQPLAGKPVLIQTSSMGVIG-G-ARCQYHLRQILVFLDAMVM  142 (193)
T ss_dssp             -TBCCHHHHHHHHHHHTS------TTCTTTTCEEEEEEECSSTTT-T-HHHHHHHHHHHHHTTCEEC
T ss_pred             -CCCCHHHHHHHHHHhhc------CccccCCCeEEEEEeCCCCcc-h-HHHHHHHHHHHHHCCCEEc
Confidence             66666799999998642      235789999999986212222 1 2456778888999999766

>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}

Probab=97.80  E-value=0.00048  Score=66.54  Aligned_cols=154  Identities=14%  Similarity=0.063  Sum_probs=104.1

Q ss_pred             cEEEEEECc-----cchHHHHHHHHHHHHhhC--CC-ceEEECCCCCCccC-----------------------------
Q 038595           69 KGKLFFISQ-----TGTSKTLAKRLHALLTSN--DL-LFDLVDPQTYEPED-----------------------------  111 (534)
Q Consensus        69 kVlI~YgSq-----TGtTE~lAe~La~~L~~~--Gl-~v~V~dL~d~d~~d-----------------------------  111 (534)
                      +|+|++||-     .++|.++|+.+.+.+.+.  |. +++++||.+.++..                             
T Consensus         6 kIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   85 (223)
T 3u7i_A            6 KTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQKVTERM   85 (223)
T ss_dssp             EEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHHHHHHH
Confidence            699999995     589999999999999875  57 89999997653210                             


Q ss_pred             ------cCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCccccc----ccCC-CCCeEEEEEecCcchH-----HHHH
Q 038595          112 ------LSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVG----SLLL-SNCKFAVFGVGSKSYE-----KTFN  175 (534)
Q Consensus       112 ------L~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~----~~~L-kgl~yAVFGLGDs~Y~-----e~Fc  175 (534)
                            +...+.+||++|.|. +.+|...+.|++++.....-|+..    ...| +|++..|+..-...|+     ..+.
T Consensus        86 ~~l~~~~~~aD~iv~~~P~y~-~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~~~~~  164 (223)
T 3u7i_A           86 SEILQQFKSANTYVIVLPLHN-FNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYTDVE  164 (223)
T ss_dssp             HHHHHHHHHCSEEEEEEECBT-TBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHHHHTC
T ss_pred             HHHHHHHHhCCEEEEEcChhh-ccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCccchHH
Confidence                  123579999999999 556667889999886543233321    1246 7888888864222232     1334


Q ss_pred             HHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHh
Q 038595          176 MVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKS  223 (534)
Q Consensus       176 ~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~  223 (534)
                      .+...+...|.-+|++.+-............++.+++..+++.+..+.
T Consensus       165 ~~~~~l~~~l~~~G~~~~~~i~~~g~~~~~~~~~~~~a~~~~~~~~~~  212 (223)
T 3u7i_A          165 YSHKYLKAMFNFLGIEDYQIVRAQGTAVLDPTEVLQNAYKEVEEAASR  212 (223)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEEECCTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCceeEEEEEcCccCCCHHHHHHHHHHHHHHHHHH
Confidence            456678888888999887554433333333566677777666555443

>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2

Probab=97.75  E-value=4.1e-05  Score=81.16  Aligned_cols=71  Identities=15%  Similarity=0.213  Sum_probs=56.3

Q ss_pred             ceEEEeecCCCCCC--ccHHHHHHHHHhc-----CCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcC
Q 038595          455 RHCALSLVGEPIMY--PEINTLVDELHRR-----RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDR  523 (534)
Q Consensus       455 ~h~alSl~GEPlLy--p~L~elI~~lk~~-----gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~r  523 (534)
                      ..+.|.+ |+|++.  +.|.++++.+++.     +..+.+.||...  ++.++.|..  ++.|.++|++.+++.+++|+|
T Consensus       106 ~~i~fgG-Gtpt~l~~~~l~~ll~~i~~~~~~~~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~i~R  184 (457)
T 1olt_A          106 SQLHWGG-GTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNR  184 (457)
T ss_dssp             EEEEEEE-SCGGGSCHHHHHHHHHHHHHHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTC
T ss_pred             EEEEEeC-CCcccCCHHHHHHHHHHHHHhCCCCCCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHHhCC
Confidence            3444444 999975  3899999999983     245778999874  677777764  899999999999999999999


Q ss_pred             CCC
Q 038595          524 PLF  526 (534)
Q Consensus       524 P~~  526 (534)
                      +..
T Consensus       185 ~~~  187 (457)
T 1olt_A          185 EQD  187 (457)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            854

>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}

Probab=97.69  E-value=6.8e-05  Score=75.14  Aligned_cols=120  Identities=19%  Similarity=0.220  Sum_probs=68.9

Q ss_pred             eecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccccccccccc
Q 038595          351 EATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYFGTVSSAID  428 (534)
Q Consensus       351 ~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~~~~~~~~~  428 (534)
                      .+..+.-|+++|.||..+...  + .+  ...+|++|++++..+.    .  .|    +.+|+|++  +.+||       
T Consensus         7 ~v~is~GC~~~C~fC~~~~~~--g-~~--r~r~~e~i~~ei~~l~----~--~G----~~ei~l~g~~~~~yG-------   64 (304)
T 2qgq_A            7 YVKISDGCDRGCTFCSIPSFK--G-SL--RSRSIEDITREVEDLL----K--EG----KKEIILVAQDTTSYG-------   64 (304)
T ss_dssp             EEESBCCC---------------C-CC--CBCCHHHHHHHHHHHH----H--TT----CCEEEEECTTGGGTT-------
T ss_pred             EEEECCCCCCcCccCCccccC--C-Cc--eeeCHHHHHHHHHHHH----H--CC----CcEEEEEeEcccccC-------
Confidence            344456799999999987543  2 12  3468899998885432    2  13    34555532  22222       


Q ss_pred             cCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CCc-EEE-EcCCCC--HHHHhhcC--
Q 038595          429 KQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RIS-TFL-VTNAQF--PDKIKLLK--  501 (534)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi~-~~L-vTNGtl--pe~l~~L~--  501 (534)
                                                       .|.| ..+.|.+|++.+++. |+. +.+ .||+..  ++.++.|.  
T Consensus        65 ---------------------------------~~~~-~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~l~~e~l~~l~~~  110 (304)
T 2qgq_A           65 ---------------------------------IDLY-RKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAMLEL  110 (304)
T ss_dssp             ---------------------------------HHHH-SSCCHHHHHHHHHTSSSSCEEEECCCCGGGCCHHHHHHHHHC
T ss_pred             ---------------------------------CCCC-cHHHHHHHHHHHHhcCCCcEEEEeeeecccCCHHHHHHHHhC
Confidence                                             1122 246899999999987 775 444 367653  66666665  


Q ss_pred             C--CceEEEEeeCCCHHHHHhhcCCCC
Q 038595          502 P--VTQLYVSVDAATKDSLKAIDRPLF  526 (534)
Q Consensus       502 ~--v~qlyvSlDA~~~e~y~~I~rP~~  526 (534)
                      +  +..+.+++++.+++.+++++|+..
T Consensus       111 g~~~~~l~i~lqs~s~~vl~~m~r~~t  137 (304)
T 2qgq_A          111 DKVVKYFDVPVQHGSDKILKLMGRTKS  137 (304)
T ss_dssp             TTBCCEEECCCBCSCHHHHHHTTCCSC
T ss_pred             CCCccEEEEecccCCHHHHHHhCCCCC
Confidence            3  688999999999999999999753

>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}

Probab=97.05  E-value=0.0061  Score=57.12  Aligned_cols=151  Identities=7%  Similarity=-0.028  Sum_probs=94.3

Q ss_pred             cEEEEEECcc---chHHHHHHHHHHHHhhCCCceEEECCCC-CCcc----CcCCCCeEEEEeccCCCCCCchHHHHHHHH
Q 038595           69 KGKLFFISQT---GTSKTLAKRLHALLTSNDLLFDLVDPQT-YEPE----DLSKEALVLIVASSWEDGKPPEAAKFFMNW  140 (534)
Q Consensus        69 kVlI~YgSqT---GtTE~lAe~La~~L~~~Gl~v~V~dL~d-~d~~----dL~~~~lvIfv~STYg~G~pPdna~~Fle~  140 (534)
                      +++|++||-.   +.+.+++....+.+    .+++++||.+ .|..    .+...+.+||++|.|.. .+|.-.+.|++.
T Consensus         2 kiLii~ghP~~~~S~~~~~l~~~~~~~----~~v~v~dL~~~~D~~~~~~~l~~aD~iV~~~P~y~~-~~pa~lK~~iDr   76 (177)
T 3ha2_A            2 QTLIIVAHPELARSNTQPFFKAAIENF----SNVTWHPLVADFNVEQEQSLLLQNDRIILEFPLYWY-SAPALLKQWMDT   76 (177)
T ss_dssp             CEEEEECCTTTTTCSSHHHHHHHHTTC----TTEEEEECCTTCCHHHHHHHHHTCSEEEEEEECBTT-BCCHHHHHHHHH
T ss_pred             eEEEEEcCCCcccCHHHHHHHHHHhcC----CCEEEEECCCcccHHHHHHHHHhCCEEEEECChhhc-cCCHHHHHHHHH
Confidence            4899999965   44455555444433    4699999986 2221    24568999999999994 455567778777


Q ss_pred             HHhhcCcccccccCCCCCeEEEEEe-cCcc--hHH------HHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHH
Q 038595          141 IDESANDFRVGSLLLSNCKFAVFGV-GSKS--YEK------TFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFE  211 (534)
Q Consensus       141 L~e~~~DFRv~~~~Lkgl~yAVFGL-GDs~--Y~e------~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~  211 (534)
                      +-....-|+. ...|+|+++.++.. |...  |..      .+....+-+...+.-+|.+.+-+....+...- .+++.+
T Consensus        77 v~~~g~~~~~-~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~~~G~~~~~~~~~~g~~~~-~~~~~~  154 (177)
T 3ha2_A           77 VMTTKFATGH-QYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFANKTKMMYLPILAVHQFLYL-EPDAQQ  154 (177)
T ss_dssp             HSCHHHHSTT-TCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHHHTTCEECCCEEEESGGGS-CHHHHH
T ss_pred             HhhcccccCC-CcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHHhCCCeEeCeEEEeCCCCC-CHHHHH
Confidence            5322101111 24689998888754 4332  310      12233444566677789988866555544322 256789


Q ss_pred             HHHHHHHHHHHhcCC
Q 038595          212 DWSKRVVAILKSGGD  226 (534)
Q Consensus       212 eW~~~L~~~L~~~~~  226 (534)
                      +|.+++.+.|....+
T Consensus       155 ~~l~~~~~~l~~~~~  169 (177)
T 3ha2_A          155 RLLVAYQQYATNVGA  169 (177)
T ss_dssp             HHHHHHHHHHHCCC-
T ss_pred             HHHHHHHHHHccccc
Confidence            999999998876544

>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}

Probab=96.94  E-value=0.007  Score=60.87  Aligned_cols=156  Identities=15%  Similarity=0.064  Sum_probs=99.2

Q ss_pred             cEEEEEECc--cchHHHHHHHHHHHHhhCCCceEEECCCCCCcc----------------------------------C-
Q 038595           69 KGKLFFISQ--TGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPE----------------------------------D-  111 (534)
Q Consensus        69 kVlI~YgSq--TGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~----------------------------------d-  111 (534)
                      ||+|+||+-  .+.+..+++.+.+.|++.|.+|+++||-+.+++                                  | 
T Consensus        24 KiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv  103 (280)
T 4gi5_A           24 KVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGTQSADI  103 (280)
T ss_dssp             EEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTCSCHHH
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCCCcHHH
Confidence            599999983  467889999999999999999999999654321                                  0 


Q ss_pred             ------cCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCccc------------ccccCCCCCeEEEE-EecCc--ch
Q 038595          112 ------LSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFR------------VGSLLLSNCKFAVF-GVGSK--SY  170 (534)
Q Consensus       112 ------L~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFR------------v~~~~Lkgl~yAVF-GLGDs--~Y  170 (534)
                            +...+.+||+.|.|..+ +|.-.+.|++..-....-|+            .+...|+|+++.++ -.|..  .|
T Consensus       104 ~~~~~~l~~aD~iv~~~P~~w~~-~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~~T~g~~~~~y  182 (280)
T 4gi5_A          104 VAEQEKLLWADTVIFQFPLWWFS-MPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLIVTAGGWAEHY  182 (280)
T ss_dssp             HHHHHHHHHCSEEEEEEECBTTB-CCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEEEECSSCGGGG
T ss_pred             HHHHHHHHhCCEEEEEecccccc-CcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEEEecCCChHHc
Confidence                  22368999999999955 45556777666532211121            23446889887655 44433  23


Q ss_pred             H-HHHHHHHHHHHHHH-----HHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhcCC
Q 038595          171 E-KTFNMVAKDLSKKM-----RELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGGD  226 (534)
Q Consensus       171 ~-e~Fc~aAK~LDk~L-----~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~~  226 (534)
                      . ..|+.....+-..+     .-+|.+.+-|...-+.... .++++++|.+++.+.|.....
T Consensus       183 ~~~g~~~~~~~~l~~~~~~~~~~~Gm~~l~~f~~~~~~~~-~~~~~~~~~~~~~~~L~~l~~  243 (280)
T 4gi5_A          183 SPRGINGPIDDILFPIQHGMLFYPGFEVLPPLVFYRTDKT-DAGQFADQCAALAERLDTLWQ  243 (280)
T ss_dssp             STTBTTCCHHHHTHHHHCCCCCTTTCEECCCEEECSGGGC-CHHHHHHHHHHHHHHHHTTTT
T ss_pred             cccccCCCHHHHHHHHHHHHHHcCCCeECCcEEEecCCCC-CHHHHHHHHHHHHHHHhhhhh
Confidence            2 12333222222222     1247766666655444322 357889999999999987653

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.90  E-value=0.005  Score=64.78  Aligned_cols=151  Identities=13%  Similarity=0.065  Sum_probs=91.3

Q ss_pred             CcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCc---cC-------cCCCCeEEEEeccCCCCCCchHHHHH
Q 038595           68 NKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEP---ED-------LSKEALVLIVASSWEDGKPPEAAKFF  137 (534)
Q Consensus        68 ~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~---~d-------L~~~~lvIfv~STYg~G~pPdna~~F  137 (534)
                      .+|+|+|||-..++..+.+.|.+.+.+ ...++++||.+..+   .|       +...+.+||++|.|..+ +|.-.+.|
T Consensus       237 mkiLvi~gspr~~ss~~n~~l~~~~~~-~~~v~v~dL~~~~p~~~~d~~~~~~~l~~aD~iv~~~P~yw~~-~Pa~lK~~  314 (413)
T 3l9w_A          237 GMILIIYAHPYPHHSHANKRMLEQART-LEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYS-IPPLLKLW  314 (413)
T ss_dssp             CCEEEEECCSCGGGCSHHHHHHHHHHT-SSSEEEEEHHHHCTTSCCCHHHHHHHHHTCSEEEEEEECBTTB-CCHHHHHH
T ss_pred             CCEEEEEECCCcchHHHHHHHHHHHhc-CCCEEEEEchhhCCCCcHHHHHHHHHHHhCCEEEEECchhhcc-CCHHHHHH
Confidence            469999999888776688888877765 35788888843222   12       34678999999999955 55568888


Q ss_pred             HHHHHhhcCcccccccCCCCCeEEEEE-ecCcc--hH----HHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHH
Q 038595          138 MNWIDESANDFRVGSLLLSNCKFAVFG-VGSKS--YE----KTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVF  210 (534)
Q Consensus       138 le~L~e~~~DFRv~~~~Lkgl~yAVFG-LGDs~--Y~----e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f  210 (534)
                      ++++-....-|..+...|+|+++.++. .|...  |.    ..|...-.-+...|.-+|.+.+-+........ -.++.+
T Consensus       315 iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~~~~~l~~l~~~~~~~G~~~l~~~~~~g~~~-~~d~~~  393 (413)
T 3l9w_A          315 IDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFI-CDDETL  393 (413)
T ss_dssp             HHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCSGGGGGHHHHHHHHHTTCEECCCEEECCSTT-CCHHHH
T ss_pred             HHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccCchHHHHHHHHHHHhCCCeecceEEEcCCCC-CCHHHH
Confidence            887743211122223368999888775 44432  21    01222335566677888998775554433321 113344


Q ss_pred             HHHHHHHHHHH
Q 038595          211 EDWSKRVVAIL  221 (534)
Q Consensus       211 ~eW~~~L~~~L  221 (534)
                      .++.+++...|
T Consensus       394 ~~~~~~~~~~L  404 (413)
T 3l9w_A          394 EGQARHYKQRL  404 (413)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444444443

>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*

Probab=90.73  E-value=0.88  Score=47.49  Aligned_cols=116  Identities=12%  Similarity=0.173  Sum_probs=72.1

Q ss_pred             eecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccC
Q 038595          351 EATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQ  430 (534)
Q Consensus       351 ~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~  430 (534)
                      .+.|..-|...|.||.-...-+. ..+-....+-+++++.+.+    .++.-+  |.                       
T Consensus       110 ~ln~y~GC~~~C~YCYl~~~~~~-~~~I~v~vN~~eiL~~l~~----~l~~~~--~~-----------------------  159 (368)
T 4fhd_A          110 AIPLATGCMGHCHYCYLQTTLGS-KPYIRVYVNLDDIFAQAQK----YINERA--PE-----------------------  159 (368)
T ss_dssp             ECCSEEBCSCCCTTCTHHHHTTT-CCSEEEECCHHHHHHHHHH----HHHHHT--TS-----------------------
T ss_pred             eeCCccCCCCCCceEeccccCCC-CCeEEEecCHHHHHHHHHH----HHhhcC--CC-----------------------
Confidence            56777889999999986533221 1222234566777776432    222111  11                       


Q ss_pred             CCCCCCCcccccccHHHhhhccCCceEEEeecCCCCC----CccHHHHHHHHHhcC-CcEEEEcCCCCHHHHhhcCC--C
Q 038595          431 IPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIM----YPEINTLVDELHRRR-ISTFLVTNAQFPDKIKLLKP--V  503 (534)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlL----yp~L~elI~~lk~~g-i~~~LvTNGtlpe~l~~L~~--v  503 (534)
                                             +-+++++.+..|+.    +.-..++|+.+.+.+ .++.++|=+.+.+.+..+.+  .
T Consensus       160 -----------------------~~~i~~g~~TDpyp~E~~~~ltr~~le~l~~~~~~~v~i~TKs~lid~L~~l~~~~~  216 (368)
T 4fhd_A          160 -----------------------ITRFEAACTSDIVGIDHLTHSLKKAIEFIGATDYGRLRFVTKYEHVDHLLDARHNGK  216 (368)
T ss_dssp             -----------------------CEEEESCSSBCHHHHHTTTCHHHHHHHHHHHCSSEEEEEEESCCCCGGGTTCCCTTC
T ss_pred             -----------------------ceEEEEEcCCCcchhhHHHhHHHHHHHHHHhCCCceEEEEeCCcCHHHHHhcCcCCc
Confidence                                   23566677778742    345678899999874 47999999999877777654  4


Q ss_pred             ceEEEEeeCCCHHHHHhh
Q 038595          504 TQLYVSVDAATKDSLKAI  521 (534)
Q Consensus       504 ~qlyvSlDA~~~e~y~~I  521 (534)
                      ..+.+||..  ++..+++
T Consensus       217 v~V~~Sitt--~~l~r~~  232 (368)
T 4fhd_A          217 TRFRFSINS--RYVINHF  232 (368)
T ss_dssp             EEEEEEECC--HHHHHHH
T ss_pred             eEEEEEEcC--HHHHHHc
Confidence            556777753  4444443

>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}

Probab=86.97  E-value=0.99  Score=37.40  Aligned_cols=59  Identities=14%  Similarity=0.144  Sum_probs=41.1

Q ss_pred             CCCCCccHHHHHHHHHhcCCcEEEEcCCCCHH---HHhhc--CC-CceEEEEe----eCCCHHHHHhhc
Q 038595          464 EPIMYPEINTLVDELHRRRISTFLVTNAQFPD---KIKLL--KP-VTQLYVSV----DAATKDSLKAID  522 (534)
Q Consensus       464 EPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe---~l~~L--~~-v~qlyvSl----DA~~~e~y~~I~  522 (534)
                      ...++|.+.++++.+++.|+++.++||+....   .++.+  .. .+.++.|-    --|+++.|..+.
T Consensus        16 ~~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~Kp~~~~~~~~~   84 (137)
T 2pr7_A           16 TDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETNGVVDKVLLSGELGVEKPEEAAFQAAA   84 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHHTTSSSEEEEHHHHSCCTTSHHHHHHHH
T ss_pred             CCccCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCChHhhccEEEEeccCCCCCCCHHHHHHHH
Confidence            45578889999999999999999999998642   23333  23 45566552    345667666554

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}

Probab=85.14  E-value=1.4  Score=39.79  Aligned_cols=61  Identities=8%  Similarity=0.131  Sum_probs=41.9

Q ss_pred             CCCCCCccHHHHHHHHHhcCCcEEEEcCCCC--HHH----HhhcC--C-CceEEEEee--------CCCHHHHHhhcC
Q 038595          463 GEPIMYPEINTLVDELHRRRISTFLVTNAQF--PDK----IKLLK--P-VTQLYVSVD--------AATKDSLKAIDR  523 (534)
Q Consensus       463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGtl--pe~----l~~L~--~-v~qlyvSlD--------A~~~e~y~~I~r  523 (534)
                      .+-.++|.+.++++.|++.|+++.++||+..  ++.    ++.+-  . .+.++.|-+        -|+++.|..+.+
T Consensus        31 ~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~  108 (189)
T 3ib6_A           31 PEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLN  108 (189)
T ss_dssp             TTCCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGGEEEEEECCTTSSTTCCCTTSHHHHHHHHH
T ss_pred             CCceeCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhheEEEEEccccccccCCCCcCHHHHHHHHH
Confidence            3456899999999999999999999999975  232    22221  1 344555544        357777776643

>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*

Probab=80.25  E-value=0.92  Score=40.96  Aligned_cols=29  Identities=14%  Similarity=0.220  Sum_probs=26.3

Q ss_pred             CCCCCccHHHHHHHHHhcCCcEEEEcCCC
Q 038595          464 EPIMYPEINTLVDELHRRRISTFLVTNAQ  492 (534)
Q Consensus       464 EPlLyp~L~elI~~lk~~gi~~~LvTNGt  492 (534)
                      +..++|.+.++++.|++.|+++.|+||+.
T Consensus        40 ~~~~~pg~~e~L~~L~~~G~~l~i~Tn~~   68 (176)
T 2fpr_A           40 KLAFEPGVIPQLLKLQKAGYKLVMITNQD   68 (176)
T ss_dssp             GCCBCTTHHHHHHHHHHTTEEEEEEEECT
T ss_pred             HCcCCccHHHHHHHHHHCCCEEEEEECCc
Confidence            45679999999999999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	534
d1ykga1	146	c.23.5.2 (A:63-208) Sulfite reductase alpha-compon	7e-26
d1ja1a2	177	c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductas	2e-25
d1bvyf_	152	c.23.5.1 (F:) FMN-binding domain of the cytochrome	1e-22
d1tlla2	202	c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FM	4e-21
d1f4pa_	147	c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [	1e-19
d1yoba1	179	c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelan	1e-15
d2fcra_	173	c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId:	5e-15
d1czna_	169	c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus	3e-13
d1oboa_	169	c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7	3e-13
d1ag9a_	175	c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId:	3e-12
d1rlja_	135	c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis	7e-12
d1fuea_	163	c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [Tax	1e-11
d2fz5a1	137	c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdeni	8e-11
d1ycga1	149	c.23.5.1 (A:251-399) Nitric oxide reductase C-term	3e-06

>d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]} Length = 146

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Cytochrome p450 reductase N-terminal domain-like
domain: Sulfite reductase alpha-component CysJ N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (251), Expect = 7e-26
 Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 10/153 (6%)

Query: 71  KLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKP 130
            +   SQTG ++ +A+ L   L +  L   LV+   Y+ + ++ E L+++V S+  +G+P
Sbjct: 2   TIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEP 61

Query: 131 PEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGA 190
           PE A     ++      F   +  L N  FAVF +G  SYE  F    KD   K+ ELG 
Sbjct: 62  PEEAVALHKFL------FSKKAPKLENTAFAVFSLGDTSYEF-FCQSGKDFDSKLAELGG 114

Query: 191 GEVLPVVEGDVDGGELDVVFEDWSKRVVAILKS 223
             +L  V+ DV+         +W  RVV  LKS
Sbjct: 115 ERLLDRVDADVE---YQAAASEWRARVVDALKS 144

>d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 177

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Cytochrome p450 reductase N-terminal domain-like
domain: NADPH-cytochrome p450 reductase, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  100 bits (250), Expect = 2e-25
 Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 14/156 (8%)

Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPE-----DLSKEALVLIVASSWE 126
           +F+ SQTGT++  A RL        +     DP+ Y+           ++LV+   +++ 
Sbjct: 20  VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYG 79

Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
           +G P + A+ F +W+ E+  D       L+  KFAVFG+G+K+YE  FN + K + +++ 
Sbjct: 80  EGDPTDNAQDFYDWLQETDVD-------LTGVKFAVFGLGNKTYE-HFNAMGKYVDQRLE 131

Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILK 222
           +LGA  +  +  GD DG  L+  F  W ++    + 
Sbjct: 132 QLGAQRIFELGLGDDDGN-LEEDFITWREQFWPAVC 166

>d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]} Length = 152

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: FMN-binding domain of the cytochrome P450bm-3
species: Bacillus megaterium [TaxId: 1404]

 Score = 92.1 bits (228), Expect = 1e-22
 Identities = 34/152 (22%), Positives = 73/152 (48%), Gaps = 9/152 (5%)

Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP 131
           + + S  GT++  A+ L  +  S      +    ++   +L +E  VLIV +S+    PP
Sbjct: 6   VLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSH-AGNLPREGAVLIVTASYNGH-PP 63

Query: 132 EAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAG 191
           + AK F++W+D+++ D       +   +++VFG G K++  T+  V   + + +   GA 
Sbjct: 64  DNAKQFVDWLDQASADE------VKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAE 117

Query: 192 EVLPVVEGDVDGGELDVVFEDWSKRVVAILKS 223
            +    E D      +  +E+W + + + + +
Sbjct: 118 NIADRGEADASDD-FEGTYEEWREHMWSDVAA 148

>d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 202

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Cytochrome p450 reductase N-terminal domain-like
domain: Nitric oxide (NO) synthase FMN domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 89.2 bits (220), Expect = 4e-21
 Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 38/189 (20%)

Query: 69  KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDG 128
           K  + + ++TG S+  AK L  +   +      +  + Y+   L  EALVL+V S++ +G
Sbjct: 5   KATILYATETGKSQAYAKTLCEIF-KHAFDAKAMSMEEYDIVHLEHEALVLVVTSTFGNG 63

Query: 129 KPPEAAKFFMNWIDE-----------------------------------SANDFRVGSL 153
            PPE  + F   + E                                      D    + 
Sbjct: 64  DPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTG 123

Query: 154 LLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDW 213
            L+N +F+VFG+GS++Y   F      +   + ELG   +L + EGD   G  +  F  W
Sbjct: 124 PLANVRFSVFGLGSRAYPH-FCAFGHAVDTLLEELGGERILKMREGDELCG-QEEAFRTW 181

Query: 214 SKRVVAILK 222
           +K+V     
Sbjct: 182 AKKVFKAAC 190

>d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Desulfovibrio vulgaris [TaxId: 881]

 Score = 83.3 bits (205), Expect = 1e-19
 Identities = 34/154 (22%), Positives = 54/154 (35%), Gaps = 9/154 (5%)

Query: 69  KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEA-LVLIVASSWED 127
           K  + + S TG ++  A+ +   L       D  D  + E   L +   LVL+  S+W D
Sbjct: 2   KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGD 61

Query: 128 GKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRE 187
                   F   +        +         K A FG G  S+E  F      + +K++ 
Sbjct: 62  DSIELQDDFIPLFDSLEETGAQ-------GRKVACFGCGDSSWE-YFCGAVDAIEEKLKN 113

Query: 188 LGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAIL 221
           LGA  V   +  D D          W+  V   +
Sbjct: 114 LGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAI 147

>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]} Length = 179

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Azotobacter vinelandii [TaxId: 354]

 Score = 73.1 bits (179), Expect = 1e-15
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 69  KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDG 128
           K  LFF S TG ++ +AK +        +  D ++      ED ++   +++   +  +G
Sbjct: 2   KIGLFFGSNTGKTRKVAKSIKKRFDDETM-SDALNVNRVSAEDFAQYQFLILGTPTLGEG 60

Query: 129 KPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEK-TFNMVAKDLSKKMRE 187
           + P  +    N   E     ++  L  S    A+FG+G +      +     +L    ++
Sbjct: 61  ELPGLSSDAENESWEEFLP-KIEGLDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKD 119

Query: 188 LGAGEVLPVVEGDVDGGELD 207
            GA     V     DG E +
Sbjct: 120 RGA---KIVGSWSTDGYEFE 136

>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]} Length = 173

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Chondrus crispus [TaxId: 2769]

 Score = 70.9 bits (173), Expect = 5e-15
 Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 6/138 (4%)

Query: 69  KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDG 128
           K  +FF + TG +  +A  +   L        +      +P+ L    L+ + A +W  G
Sbjct: 1   KIGIFFSTSTGNTTEVADFIGKTL-GAKADAPIDVDDVTDPQALKDYDLLFLGAPTWNTG 59

Query: 129 KPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVG-SKSYEKTFNMVAKDLSKKMRE 187
              E +    +         ++  + + +   A+FG+G ++ Y   F    +++     +
Sbjct: 60  ADTERSGTSWDEFLYD----KLPEVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAK 115

Query: 188 LGAGEVLPVVEGDVDGGE 205
            GA  V      D D  E
Sbjct: 116 QGAKPVGFSNPDDYDYEE 133

>d1czna_ c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus PCC 7942 [TaxId: 1140]} Length = 169

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Synechococcus elongatus PCC 7942 [TaxId: 1140]

 Score = 65.8 bits (160), Expect = 3e-13
 Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 11/145 (7%)

Query: 69  KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDG 128
           K  LF+ +QTG ++T+A+ +        ++ DL D    +  DL+    ++I   +W  G
Sbjct: 2   KIGLFYGTQTGVTQTIAESIQQEFGGESIV-DLNDIANADASDLNAYDYLIIGCPTWNVG 60

Query: 129 KPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVG-SKSYEKTFNMVAKDLSKKMRE 187
           +     +   + +D          +     K A FG G    Y   F      L +K+  
Sbjct: 61  ELQSDWEGIYDDLDS---------VNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISS 111

Query: 188 LGAGEVLPVVEGDVDGGELDVVFED 212
           LG+  V        D  E   V  +
Sbjct: 112 LGSQTVGYWPIEGYDFNESKAVRNN 136

>d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 1163]} Length = 169

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Anabaena, pcc 7119 and 7120 [TaxId: 1163]

 Score = 65.9 bits (160), Expect = 3e-13
 Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 12/138 (8%)

Query: 69  KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDG 128
           K  LF+ +QTG ++++A+ +       + +  L D    E  DL+    ++I   +   G
Sbjct: 3   KIGLFYGTQTGKTESVAEIIRDEF--GNDVVTLHDVSQAEVTDLNDYQYLIIGCPTLNIG 60

Query: 129 KPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVG-SKSYEKTFNMVAKDLSKKMRE 187
           +     +   + +D+         +  +    A FG G    Y   F      L +K+ +
Sbjct: 61  ELQSDWEGLYSELDD---------VDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQ 111

Query: 188 LGAGEVLPVVEGDVDGGE 205
            G   V        D  +
Sbjct: 112 RGGKTVGYWSTDGYDFND 129

>d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]} Length = 175

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Escherichia coli [TaxId: 562]

 Score = 62.8 bits (152), Expect = 3e-12
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 12/132 (9%)

Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP 131
           +FF S TG ++ +AK +   L     + D+ D      EDL    ++L+   +W  G+  
Sbjct: 5   IFFGSDTGNTENIAKMIQKQL--GKDVADVHDIAKSSKEDLEAYDILLLGIPTWYYGEAQ 62

Query: 132 EAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVG-SKSYEKTFNMVAKDLSKKMRELGA 190
                F   ++E         +  +    A+FG G  + Y + F      +   +   GA
Sbjct: 63  CDWDDFFPTLEE---------IDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGA 113

Query: 191 GEVLPVVEGDVD 202
             V         
Sbjct: 114 TIVGHWPTAGYH 125

>d1rlja_ c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavoprotein NrdI
domain: Flavoprotein NrdI
species: Bacillus subtilis [TaxId: 1423]

 Score = 60.7 bits (147), Expect = 7e-12
 Identities = 22/150 (14%), Positives = 46/150 (30%), Gaps = 33/150 (22%)

Query: 71  KLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKP 130
           ++ F S+TG  +    +                      E    +   ++V  +   G+ 
Sbjct: 12  QIIFDSKTGNVQRFVNKTG------------FQQIRKVDEMDHVDTPFVLVTYTTNFGQV 59

Query: 131 PEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGA 190
           P + + F+                  +    V   G+K +   F   A  +S++ +    
Sbjct: 60  PASTQSFLEKYA--------------HLLLGVAASGNKVWGDNFAKSADTISRQYQVPIL 105

Query: 191 GEVLPVVEGDVDGGELDVV-FEDWSKRVVA 219
            +       ++ G   DV  F    +RVV 
Sbjct: 106 HKF------ELSGTSKDVELFTQEVERVVT 129

>d1fuea_ c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [TaxId: 210]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Helicobacter pylori [TaxId: 210]

 Score = 60.5 bits (146), Expect = 1e-11
 Identities = 18/136 (13%), Positives = 44/136 (32%), Gaps = 17/136 (12%)

Query: 72  LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP 131
           +FF + +G ++ +A+++   + + ++    VD      E  +    V++VA +   G   
Sbjct: 5   IFFGTDSGNAEAIAEKISKAIGNAEV----VDVAKASKEQFNGFTKVILVAPTAGAGDLQ 60

Query: 132 EAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAG 191
              + F+  ++             +N    + G+G      +            +     
Sbjct: 61  TDWEDFLGTLEA---------SDFANKTIGLVGLGD-QDTYSETFAEGIFHIYEKAKAGK 110

Query: 192 EVLPVVEGDVDGGELD 207
            V        DG    
Sbjct: 111 VVGQT---STDGYHFA 123

>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Megasphaera elsdenii [TaxId: 907]

 Score = 57.8 bits (139), Expect = 8e-11
 Identities = 14/132 (10%), Positives = 47/132 (35%), Gaps = 13/132 (9%)

Query: 71  KLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKP 130
           ++ + S TG ++ +A  + A + +     + V  +    +D++ + ++L+   +    + 
Sbjct: 3   EIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPAMGSEEL 62

Query: 131 PEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGA 190
            ++      +  + A             K  +FG       +          ++  + GA
Sbjct: 63  EDS--VVEPFFTDLAPKL-------KGKKVGLFGSYGWGSGEW----MDAWKQRTEDTGA 109

Query: 191 GEVLPVVEGDVD 202
             +   +  ++ 
Sbjct: 110 TVIGTAIVNEMP 121

>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Nitric oxide reductase C-terminal domain
species: Moorella thermoacetica [TaxId: 1525]

 Score = 45.1 bits (106), Expect = 3e-06
 Identities = 23/162 (14%), Positives = 50/162 (30%), Gaps = 23/162 (14%)

Query: 69  KGKL--FFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDL---SKEALVLIVAS 123
           K K    + +   +++ +A  L   L +      L      +  D+     +A  ++V S
Sbjct: 2   KAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGS 61

Query: 124 SWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSK 183
              +          ++ +           L   N     FG              K L +
Sbjct: 62  PTINNDILPVVSPLLDDLVG---------LRPKNKVGLAFGAYG-----WGGGAQKILEE 107

Query: 184 KMRELGA---GEVLPVVEGDVDGGELDVVFEDWSKRVVAILK 222
           +++        E  P V+    G +L   +E   +++ A + 
Sbjct: 108 RLKAAKIELIAEPGPTVQWVPRGEDLQRCYE-LGRKIAARIA 148

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	534
d1ykga1	146	Sulfite reductase alpha-component CysJ N-terminal	100.0
d1ja1a2	177	NADPH-cytochrome p450 reductase, N-terminal domain	100.0
d1tlla2	202	Nitric oxide (NO) synthase FMN domain {Rat (Rattus	99.98
d1bvyf_	152	FMN-binding domain of the cytochrome P450bm-3 {Bac	99.98
d1f4pa_	147	Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]}	99.96
d1czna_	169	Flavodoxin {Synechococcus elongatus PCC 7942 [TaxI	99.93
d1yoba1	179	Flavodoxin {Azotobacter vinelandii [TaxId: 354]}	99.93
d2fcra_	173	Flavodoxin {Chondrus crispus [TaxId: 2769]}	99.92
d1ag9a_	175	Flavodoxin {Escherichia coli [TaxId: 562]}	99.92
d1oboa_	169	Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 11	99.89
d1fuea_	163	Flavodoxin {Helicobacter pylori [TaxId: 210]}	99.86
d1rlja_	135	Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423]	99.85
d2fz5a1	137	Flavodoxin {Megasphaera elsdenii [TaxId: 907]}	99.85
d5nula_	138	Flavodoxin {Clostridium beijerinckii [TaxId: 1520]	99.83
d1e5da1	152	Rubredoxin oxygen:oxidoreductase (ROO), C-terminal	99.79
d1vmea1	148	ROO-like flavoprotein TM0755, C-terminal domain {T	99.79
d1ycga1	149	Nitric oxide reductase C-terminal domain {Moorella	99.73
d2arka1	184	Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]}	99.44
d1tv8a_	327	Molybdenum cofactor biosynthesis protein A MoaA {S	99.07
d1ydga_	201	Trp repressor binding protein WrbA {Deinococcus ra	99.05
d2a5la1	196	Trp repressor binding protein WrbA {Pseudomonas ae	99.02
d1sqsa_	232	Hypothetical protein SP1951 {(Streptococcus pneumo	98.42
d2fzva1	233	Putative arsenical resistance protein {Shigella fl	98.39
d1rlia_	179	Hypothetical protein YwqN {Bacillus subtilis [TaxI	98.37
d1t0ia_	185	Hypothetical protein Ylr011wp {Baker's yeast (Sacc	98.2
d1nni1_	171	Azobenzene reductase {Bacillus subtilis [TaxId: 14	98.12
d1rtta_	174	Hypothetical protein PA1204 {Pseudomonas aeruginos	98.02
d2z98a1	200	ACP phosphodiesterase AcpD {Escherichia coli [TaxI	97.63
d2qwxa1	230	Quinone reductase type 2 (menadione reductase) {Hu	97.58
d1d4aa_	273	NAD(P)H:quinone reductase {Human (Homo sapiens) [T	97.41
d1r30a_	312	Biotin synthase {Escherichia coli [TaxId: 562]}	96.48
d1olta_	441	Oxygen-independent coproporphyrinogen III oxidase	94.71
d1u7pa_	164	Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu	85.22
d2fi1a1	187	Putative hydrolase SP0805 {Streptococcus pneumonia	80.21

>d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Cytochrome p450 reductase N-terminal domain-like
domain: Sulfite reductase alpha-component CysJ N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-34  Score=263.64  Aligned_cols=145  Identities=32%  Similarity=0.519  Sum_probs=135.3

Q ss_pred             EEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCccc
Q 038595           70 GKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFR  149 (534)
Q Consensus        70 VlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFR  149 (534)
                      |+|+|+|+|||||++|+.|++.|.++|+.++++|++++++++|.+++.+||++||||+|++|+|+..|+++|....    
T Consensus         1 I~I~ygS~tGnae~~A~~l~~~l~~~g~~~~~~~~~~~~~~~l~~~~~~i~~~sT~g~G~~P~~~~~f~~~l~~~~----   76 (146)
T d1ykga1           1 ITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKK----   76 (146)
T ss_dssp             CEEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGGGGCSEEEEEEECBGGGBCCGGGHHHHHHHTSTT----
T ss_pred             CEEEEECCchHHHHHHHHHHHHHHHCCCCceEeeccccchhhcccccceEEEEeecCCCcCchhHHHHHHHHHccc----
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999996542    


Q ss_pred             ccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhc
Q 038595          150 VGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSG  224 (534)
Q Consensus       150 v~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~  224 (534)
                        ...|+|++|||||+||+.| ++||.++|.++++|+++||++++|++++|..   .+..+++|.++++++|+..
T Consensus        77 --~~~l~~~~~aVfGlGds~Y-~~Fc~~~~~l~~~l~~lGa~~i~~~~~~D~~---~e~~~~~W~~~~~~~L~~~  145 (146)
T d1ykga1          77 --APKLENTAFAVFSLGDTSY-EFFCQSGKDFDSKLAELGGERLLDRVDADVE---YQAAASEWRARVVDALKSR  145 (146)
T ss_dssp             --CCCCTTCEEEEEEECCTTS-SSTTHHHHHHHHHHHHHTCEESSCCEEECTT---CHHHHHHHHHHHHHHHHTC
T ss_pred             --ccccCCCeEEEEcCcchhH-HHHHHHHHHHHHHHHHCCCcEeeCceecCCC---CHHHHHHHHHHHHHHHHhh
Confidence              3468999999999999999 5999999999999999999999999999964   4789999999999999864

>d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Cytochrome p450 reductase N-terminal domain-like
domain: NADPH-cytochrome p450 reductase, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.8e-33  Score=263.85  Aligned_cols=149  Identities=32%  Similarity=0.550  Sum_probs=137.5

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcC-----CCCeEEEEeccCCCCCCchHHHHHHHHHHh
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLS-----KEALVLIVASSWEDGKPPEAAKFFMNWIDE  143 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~-----~~~lvIfv~STYg~G~pPdna~~Fle~L~e  143 (534)
                      +|+|+|||+|||||.+|+.|++.|.++|+++.+++++++++.++.     ...++||++||||+|++|+|+..|++||++
T Consensus        17 ~i~IlygS~tGnae~~A~~l~~~l~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ST~g~G~~P~n~~~F~~~L~~   96 (177)
T d1ja1a2          17 NIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYGEGDPTDNAQDFYDWLQE   96 (177)
T ss_dssp             CEEEEEECSSSHHHHHHHHHHHHGGGGTCCEEEECGGGSCGGGGGGGGGSTTCEEEEEEEEETTTEECGGGHHHHHHHHH
T ss_pred             eEEEEEECCchHHHHHHHHHHHHHHHCCCceEEeeccccchhhhhhhhccccceEEEEEeccCCCCCCHhHHHHHHHHHh
Confidence            599999999999999999999999999999999999999887763     457899999999999999999999999997


Q ss_pred             hcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHh
Q 038595          144 SANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKS  223 (534)
Q Consensus       144 ~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~  223 (534)
                      ..       ..|++++|||||+||+.|+ +||.+++.++++|+++||++++|++++|++. +.+++|+.|.++++++|++
T Consensus        97 ~~-------~~l~~~~yaVfGlGds~Y~-~Fc~a~~~l~~~L~~lGa~~i~~~g~~D~~~-~~e~~~~~W~~~l~~~L~~  167 (177)
T d1ja1a2          97 TD-------VDLTGVKFAVFGLGNKTYE-HFNAMGKYVDQRLEQLGAQRIFELGLGDDDG-NLEEDFITWREQFWPAVCE  167 (177)
T ss_dssp             CC-------CCCTTCEEEEEEEECSSSS-STTHHHHHHHHHHHHTTCEESSCCEEEETTT-CHHHHHHHHHHHHHHHHHH
T ss_pred             cc-------ccccCceEEEEecCCccHH-HHHHHHHHHHHHHHHcCCcEEEcceeecCCC-CcHHHHHHHHHHHHHHHHH
Confidence            63       4589999999999999995 9999999999999999999999999999875 4688999999999999998


Q ss_pred             cCC
Q 038595          224 GGD  226 (534)
Q Consensus       224 ~~~  226 (534)
                      .+.
T Consensus       168 ~~~  170 (177)
T d1ja1a2         168 FFG  170 (177)
T ss_dssp             HHT
T ss_pred             HcC
Confidence            765

>d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Cytochrome p450 reductase N-terminal domain-like
domain: Nitric oxide (NO) synthase FMN domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=1.7e-32  Score=261.08  Aligned_cols=158  Identities=28%  Similarity=0.453  Sum_probs=140.5

Q ss_pred             CCCcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhc
Q 038595           66 NPNKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESA  145 (534)
Q Consensus        66 ~~~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~  145 (534)
                      .|.||+|+|||+|||||++|+.|++.|. +|+++++++++++++.++...+.+||++||||.|+||+|+..|++||.+..
T Consensus         2 ~~~ki~I~YgS~TG~te~~A~~la~~l~-~~~~~~v~~~~~~~~~~l~~~~~~i~~~sT~g~Ge~p~~~~~f~~~l~~~~   80 (202)
T d1tlla2           2 KRVKATILYATETGKSQAYAKTLCEIFK-HAFDAKAMSMEEYDIVHLEHEALVLVVTSTFGNGDPPENGEKFGCALMEMR   80 (202)
T ss_dssp             CSCEEEEEEECSSSHHHHHHHHHHHHHT-TTSEEEEEETTTSCTTSGGGCSEEEEEECCBTTTBCCGGGHHHHHHHHHHT
T ss_pred             CCCcEEEEEECCchHHHHHHHHHHHHHh-CCCCcEEechhhCCHHHhccccceEEeccccCCCCCChhHHHHHHHHHhcc
Confidence            3457999999999999999999999885 699999999999999999999999999999999999999999999998642


Q ss_pred             C-----------------------------------cccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCC
Q 038595          146 N-----------------------------------DFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGA  190 (534)
Q Consensus       146 ~-----------------------------------DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA  190 (534)
                      .                                   +.+.+...|++++|||||+||+.| ++||.+++.+|++|.+|||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~faV~GlGds~y-~~Fc~~ak~ld~~l~~LGA  159 (202)
T d1tlla2          81 HPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRAY-PHFCAFGHAVDTLLEELGG  159 (202)
T ss_dssp             C-----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECTTS-SSTTHHHHHHHHHHHHTTC
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccccchhcCceeEEEccCcccH-HHHhhhHHHHHHHHHhCCC
Confidence            1                                   223456689999999999999999 5999999999999999999


Q ss_pred             ceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhcCC
Q 038595          191 GEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGGD  226 (534)
Q Consensus       191 ~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~~  226 (534)
                      +|++|++++|++.+ .+++|++|.++|+++|.....
T Consensus       160 ~ri~~~g~~D~~~~-~e~~~~~W~~~l~~~l~~~~~  194 (202)
T d1tlla2         160 ERILKMREGDELCG-QEEAFRTWAKKVFKAACDVFC  194 (202)
T ss_dssp             EESSCCEEEETTTT-HHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccchhccCCCC-cHHHHHHHHHHHHHHHHHHcC
Confidence            99999999998865 688999999999999988764

>d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: FMN-binding domain of the cytochrome P450bm-3
species: Bacillus megaterium [TaxId: 1404]

Probab=99.98  E-value=3.3e-32  Score=248.48  Aligned_cols=149  Identities=23%  Similarity=0.450  Sum_probs=132.4

Q ss_pred             CcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCc
Q 038595           68 NKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESAND  147 (534)
Q Consensus        68 ~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~D  147 (534)
                      ++|+|+|||+|||||++|+.|++.|.++|+.+++.+++++ +.++..+.+++|+++|| +|++|+|+..|+++|++..  
T Consensus         2 tpi~I~ygS~tGnae~~A~~l~~~l~~~g~~~~v~~~~~~-~~~~~~~~~i~~~stt~-~G~~p~~~~~f~~~l~~~~--   77 (152)
T d1bvyf_           2 TPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSH-AGNLPREGAVLIVTASY-NGHPPDNAKQFVDWLDQAS--   77 (152)
T ss_dssp             CCEEEEEECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGGS-TTCCCSSSEEEEEECCB-TTBCCTTTHHHHHHHHTCC--
T ss_pred             CcEEEEEECCchHHHHHHHHHHHHHHhCCCCceeccchhh-hhhhhhccceEEEeccc-cCCCcccHHHHHHHHHhcc--
Confidence            3599999999999999999999999999999999999775 45677777777666665 6999999999999998764  


Q ss_pred             ccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhcC
Q 038595          148 FRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGG  225 (534)
Q Consensus       148 FRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~  225 (534)
                          ...+++++|||||+||++|+++||.+++.++++|+++||+|++|++++|+..+ .++.+++|.++|+++|.+..
T Consensus        78 ----~~~~~~~~~aV~GlGds~Y~~~fc~~~~~ld~~l~~lGA~~i~~~~~~D~~~~-~e~~~~~W~~~l~~~L~~~~  150 (152)
T d1bvyf_          78 ----ADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDD-FEGTYEEWREHMWSDVAAYF  150 (152)
T ss_dssp             ----SSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEEEETTSC-HHHHHHHHHHHHHHHHHHHS
T ss_pred             ----hhhccCceeeeeeccccchhhhhhhHHHHHHHHHHHcCCeEeECceeecCCCC-cHHHHHHHHHHHHHHHHHHc
Confidence                23579999999999999998899999999999999999999999999998764 78999999999999998764

>d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=99.96  E-value=2.7e-30  Score=233.39  Aligned_cols=143  Identities=24%  Similarity=0.293  Sum_probs=128.2

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcC-CCCeEEEEeccCCCC--CCchHHHHHHHHHHhhc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLS-KEALVLIVASSWEDG--KPPEAAKFFMNWIDESA  145 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~-~~~lvIfv~STYg~G--~pPdna~~Fle~L~e~~  145 (534)
                      |++|+|+|+||||+++|+.|++.|.+.|+++++++++++++.++. ..+++||++||||+|  ++|+++..|++.|+.  
T Consensus         2 kv~I~Y~S~tG~te~~A~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~vii~~sT~g~g~~~~~~~~~~f~~~l~~--   79 (147)
T d1f4pa_           2 KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEE--   79 (147)
T ss_dssp             EEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTTTTTCSEEEEEECEECSSSCEECTTTHHHHHTGGG--
T ss_pred             cEEEEEECCChhHHHHHHHHHHHHHHCCCeEEEEeccccchhhhhcccCeEEEEecccCCcCCChhhhHHHhhhcccc--
Confidence            599999999999999999999999999999999999999988864 578999999999987  456788888887754  


Q ss_pred             CcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHH
Q 038595          146 NDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAIL  221 (534)
Q Consensus       146 ~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L  221 (534)
                             ..|+|++|||||+||++|+ +||.+++.++++|+++||+++.|++++|......++.|.+|.+.|+++|
T Consensus        80 -------~~l~~~~~avfGlGds~y~-~f~~a~~~l~~~l~~lGa~~v~~~~~~d~~~~~~~~~~~~W~~~l~~al  147 (147)
T d1f4pa_          80 -------TGAQGRKVACFGCGDSSWE-YFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAI  147 (147)
T ss_dssp             -------SCCTTCEEEEEEEECTTSS-STTHHHHHHHHHHHHTTCEECSCCEEEESCGGGGHHHHHHHHHHHHTTC
T ss_pred             -------ccccCCcEEEEecCCccHH-HHhHHHHHHHHHHHhCCCEEeeCCEEEecCCccchHHHHHHHHHHHHhC
Confidence                   3689999999999999995 9999999999999999999999999999775556789999999998653

>d1czna_ c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus PCC 7942 [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Synechococcus elongatus PCC 7942 [TaxId: 1140]

Probab=99.93  E-value=3.1e-26  Score=212.56  Aligned_cols=143  Identities=22%  Similarity=0.329  Sum_probs=124.8

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      ||.|+|||+|||||.+|+.|++.|...+. +++++++++++.++.+++++||++||||.|++|+++..|+++|.+     
T Consensus         2 KI~I~YgS~tGnTe~vA~~ia~~l~~~~~-v~i~~~~~~~~~~l~~~d~li~g~sT~g~Ge~p~~~~~f~~~l~~-----   75 (169)
T d1czna_           2 KIGLFYGTQTGVTQTIAESIQQEFGGESI-VDLNDIANADASDLNAYDYLIIGCPTWNVGELQSDWEGIYDDLDS-----   75 (169)
T ss_dssp             CEEEEECCSSSHHHHHHHHHHHHHTSTTT-EEEEEGGGCCGGGGGGCSEEEEECCEETTTEECHHHHHHGGGGGG-----
T ss_pred             cEEEEEECCCchHHHHHHHHHHHhhhCCC-eeEEeccccccccccccCeEEEEecCCCCCCCcHHHHHHHhhhhc-----
Confidence            59999999999999999999999988876 899999999999999999999999999999999999999998865     


Q ss_pred             cccccCCCCCeEEEEEecCcc-hHHHHHHHHHHHHHHHHHcCCceecceEE--------------------eeCCCC-C-
Q 038595          149 RVGSLLLSNCKFAVFGVGSKS-YEKTFNMVAKDLSKKMRELGAGEVLPVVE--------------------GDVDGG-E-  205 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~-Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~--------------------gD~~~g-~-  205 (534)
                          ..|+++++|+||+||+. |.++||.+++.++++|.++||+++.....                    .|+..+ + 
T Consensus        76 ----~~l~~k~~a~fglGd~~~~y~~F~~a~~~l~~~l~~~Ga~~ig~~~~~~y~~~~s~a~~~~~f~GL~lD~d~~~~~  151 (169)
T d1czna_          76 ----VNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRNNQFVGLAIDEDNQPDL  151 (169)
T ss_dssp             ----SCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTTTCGGG
T ss_pred             ----ccCCCceEEEEEecCCcccchhhhhHHHHHHHHHHhCCCceecCccCCCcccccchhccCCeEEeeeccccCchhh
Confidence                36899999999999984 44699999999999999999999976422                    354432 2 


Q ss_pred             cHHHHHHHHHHHHHHH
Q 038595          206 LDVVFEDWSKRVVAIL  221 (534)
Q Consensus       206 ~e~~f~eW~~~L~~~L  221 (534)
                      .+.+++.|.++|.+.+
T Consensus       152 t~~ri~~W~~~l~~e~  167 (169)
T d1czna_         152 TKNRIKTWVSQLKSEF  167 (169)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHh
Confidence            3678899999888754

>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.93  E-value=8e-27  Score=218.89  Aligned_cols=146  Identities=20%  Similarity=0.304  Sum_probs=121.6

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHH-----HHHh
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMN-----WIDE  143 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle-----~L~e  143 (534)
                      ||.|+|||+|||||.+|+.|++.|...++ ++++++++++++++..++++||++||||+|++|+++..|++     ++.+
T Consensus         2 KI~I~YgS~tGnte~vA~~ia~~l~~~~~-~~v~~~~~~~~~~l~~~d~~i~~~sT~G~Ge~Pd~~~~f~~~~w~~~~~~   80 (179)
T d1yoba1           2 KIGLFFGSNTGKTRKVAKSIKKRFDDETM-SDALNVNRVSAEDFAQYQFLILGTPTLGEGELPGLSSDAENESWEEFLPK   80 (179)
T ss_dssp             CEEEEECCSSSHHHHHHHHHHTTSCTTTB-CCCEEGGGCCHHHHHTCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHHHH
T ss_pred             eEEEEEECCchhHHHHHHHHHHHHhhCCC-ceEEeccccChhhccCcCEEEEEecccCCCCCCchhHHHHHHHHHHHHhh
Confidence            59999999999999999999999987775 77899999999999999999999999999999999876643     2222


Q ss_pred             hcCcccccccCCCCCeEEEEEecCcch-HHHHHHHHHHHHHHHHHcCCceecce--------------------EEeeCC
Q 038595          144 SANDFRVGSLLLSNCKFAVFGVGSKSY-EKTFNMVAKDLSKKMRELGAGEVLPV--------------------VEGDVD  202 (534)
Q Consensus       144 ~~~DFRv~~~~Lkgl~yAVFGLGDs~Y-~e~Fc~aAK~LDk~L~kLGA~rV~pl--------------------g~gD~~  202 (534)
                      .      ....|+|++|||||+||+.| .++||.+++.|+++|.++||++|...                    ..+|+.
T Consensus        81 ~------~~~~l~g~~~avfGlGDs~~~~~~Fc~a~~~l~~~l~~~GA~~iG~~~~~gy~f~~s~a~~~~~f~GL~lD~d  154 (179)
T d1yoba1          81 I------EGLDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKFVGLALDLD  154 (179)
T ss_dssp             H------TTCCCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTCCCSCCTTBSSSSBSSEEECTT
T ss_pred             c------cccccCCcEEEEEEecCCcccchhHHHHHHHHHHHHHhCCCeEeeccCCCCcccccchhccCCceeeeecccc
Confidence            2      24579999999999999974 57999999999999999999999532                    234554


Q ss_pred             CC--CcHHHHHHHHHHHHHHH
Q 038595          203 GG--ELDVVFEDWSKRVVAIL  221 (534)
Q Consensus       203 ~g--~~e~~f~eW~~~L~~~L  221 (534)
                      ..  ..+++++.|.++|.+.+
T Consensus       155 nq~~~t~~ri~~W~~~l~~e~  175 (179)
T d1yoba1         155 NQSGKTDERVAAWLAQIAPEF  175 (179)
T ss_dssp             TCGGGHHHHHHHHHHHHGGGG
T ss_pred             CchhhhHHHHHHHHHHHHHHh
Confidence            32  24788999999887654

>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Chondrus crispus [TaxId: 2769]

Probab=99.92  E-value=5.8e-26  Score=211.58  Aligned_cols=148  Identities=18%  Similarity=0.263  Sum_probs=120.1

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      ||.|+|||+|||||.+|++|++.|.+.+..+ +..++..+++++..++++||++||||.|++|+++..|+.+|...    
T Consensus         1 KI~I~YgS~TGnTe~vA~~Ia~~l~~~~~~~-v~~~~~~~~~~l~~~d~li~g~sT~g~Ge~p~~~~~~~~~l~~~----   75 (173)
T d2fcra_           1 KIGIFFSTSTGNTTEVADFIGKTLGAKADAP-IDVDDVTDPQALKDYDLLFLGAPTWNTGADTERSGTSWDEFLYD----   75 (173)
T ss_dssp             CEEEEECCSSSHHHHHHHHHHHHHGGGBCCC-EEGGGCSCGGGGGGCSEEEEEEECCSTTCSSCCSCSTHHHHHHH----
T ss_pred             CEEEEEECCchHHHHHHHHHHHHHhhcCCCe-EEEeccchhhccccCCeEEEEEeccCCCCCchhHHHHHHHHhhc----
Confidence            5899999999999999999999998765432 22223345778889999999999999999999999998887532    


Q ss_pred             cccccCCCCCeEEEEEecCcc-hHHHHHHHHHHHHHHHHHcCCceecce--------------------EEeeCCC--CC
Q 038595          149 RVGSLLLSNCKFAVFGVGSKS-YEKTFNMVAKDLSKKMRELGAGEVLPV--------------------VEGDVDG--GE  205 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~-Y~e~Fc~aAK~LDk~L~kLGA~rV~pl--------------------g~gD~~~--g~  205 (534)
                      .+++..|+|++|||||+||+. |+++||.+++.|++.|+++||++|...                    ..+|+..  +.
T Consensus        76 ~~~~~~l~gk~~avFGlGD~~~y~~~F~~a~~~l~~~l~~~GA~~IG~~~~~gy~f~~s~a~~~~~f~gL~lD~dn~~~~  155 (173)
T d2fcra_          76 KLPEVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDYDYEESKSVRDGKFLGLPLDMVNDQIP  155 (173)
T ss_dssp             TGGGCCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGGSCCSCCTTEETTEESSEEEETTTCSSC
T ss_pred             cccCCCCCCCeEEEEEecCCCcchhhHHHHHHHHHHHHHhCCCEEecccCCCCcccccChhhcCCccccccccccccchh
Confidence            134567999999999999996 668999999999999999999998432                    2245542  33


Q ss_pred             cHHHHHHHHHHHHHHH
Q 038595          206 LDVVFEDWSKRVVAIL  221 (534)
Q Consensus       206 ~e~~f~eW~~~L~~~L  221 (534)
                      .+.+++.|.++|.+.+
T Consensus       156 t~~ri~~W~~~l~~e~  171 (173)
T d2fcra_         156 MEKRVAGWVEAVVSET  171 (173)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHh
Confidence            5788999999998866

>d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.4e-25  Score=209.16  Aligned_cols=143  Identities=23%  Similarity=0.290  Sum_probs=122.5

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      +|.|+|+|+|||||.+|+.|++.|...+  +++.++++++++++.+++++||++||||.|++|+++..|+..|+.     
T Consensus         2 ~vgIlYgS~TGnte~vA~~ia~~l~~~~--~~v~~~~~~~~~~l~~~~~~i~~~sT~g~Ge~p~~~~~~~~~l~~-----   74 (175)
T d1ag9a_           2 ITGIFFGSDTGNTENIAKMIQKQLGKDV--ADVHDIAKSSKEDLEAYDILLLGIPTWYYGEAQCDWDDFFPTLEE-----   74 (175)
T ss_dssp             CEEEEECCSSSHHHHHHHHHHHHHCTTT--EEEEEGGGCCHHHHHTCSEEEEECCEETTTEECHHHHHHHHHHTT-----
T ss_pred             cEEEEEECCChHHHHHHHHHHHHhccCC--cEEEEccchhhhccccccEEEEEecccCCCCCchHHHHHHhhccc-----
Confidence            5899999999999999999999998765  678899999999999999999999999999999999999988764     


Q ss_pred             cccccCCCCCeEEEEEecCcc-hHHHHHHHHHHHHHHHHHcCCceecceE---------------------EeeCCCC--
Q 038595          149 RVGSLLLSNCKFAVFGVGSKS-YEKTFNMVAKDLSKKMRELGAGEVLPVV---------------------EGDVDGG--  204 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~-Y~e~Fc~aAK~LDk~L~kLGA~rV~plg---------------------~gD~~~g--  204 (534)
                          ..|++++|||||+||+. |+++||.+++.++++|.++||+++....                     ..|++..  
T Consensus        75 ----~~l~~~~~avfglGd~~~~~~~F~~a~~~l~~~l~~~Ga~~iG~~~~~gy~f~~s~a~~~~~~~~gL~~D~dn~~~  150 (175)
T d1ag9a_          75 ----IDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPE  150 (175)
T ss_dssp             ----CCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTTCCCSCCSCEEETTEESSEEECTTTCHH
T ss_pred             ----cccCCCcEEEEEccCCchhhhHHHHHHHHHHHHHHhcCCEEecccCCCCcccccchhhccCCeeeeeeeccccchh
Confidence                46899999999999996 4579999999999999999999996531                     1233321  


Q ss_pred             CcHHHHHHHHHHHHHHHH
Q 038595          205 ELDVVFEDWSKRVVAILK  222 (534)
Q Consensus       205 ~~e~~f~eW~~~L~~~L~  222 (534)
                      ..+.+++.|.++|.+.|.
T Consensus       151 ~t~~ri~~W~~~l~~e~~  168 (175)
T d1ag9a_         151 LTAERVEKWVKQISEELH  168 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            135678899999988774

>d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 1163]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Anabaena, pcc 7119 and 7120 [TaxId: 1163]

Probab=99.89  E-value=2.7e-23  Score=191.54  Aligned_cols=142  Identities=20%  Similarity=0.238  Sum_probs=121.6

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      ||.|+|+|+|||||.+|+.|++.|...+  +++.+++++++++|..++.+||++|||+.|.+|+++..|+..|.+     
T Consensus         3 KI~I~YgS~tGnTe~vA~~I~~~l~~~~--~~v~~i~~~~~~~l~~~d~~i~g~sT~g~G~~p~~~~~~~~~l~~-----   75 (169)
T d1oboa_           3 KIGLFYGTQTGKTESVAEIIRDEFGNDV--VTLHDVSQAEVTDLNDYQYLIIGCPTLNIGELQSDWEGLYSELDD-----   75 (169)
T ss_dssp             SEEEEECCSSSHHHHHHHHHHHHHCTTT--EEEEETTTCCGGGGGGCSEEEEEEEEETTTEECHHHHHHHTTGGG-----
T ss_pred             EEEEEEECCCchHHHHHHHHHHHhccCC--ceEEEcccCChhhhccCCEEEEEEecCCCCCCChhHHHhhhhhcc-----
Confidence            5999999999999999999999997765  678999999999999999999999999999999999999888764     


Q ss_pred             cccccCCCCCeEEEEEecCcc-hHHHHHHHHHHHHHHHHHcCCceecceE-------------------E-eeCCCC--C
Q 038595          149 RVGSLLLSNCKFAVFGVGSKS-YEKTFNMVAKDLSKKMRELGAGEVLPVV-------------------E-GDVDGG--E  205 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~-Y~e~Fc~aAK~LDk~L~kLGA~rV~plg-------------------~-gD~~~g--~  205 (534)
                          ..|+++++|+||+||+. |.++||.+.+.+.+.|.++||+++...-                   . .|++..  -
T Consensus        76 ----~~l~~k~~a~fg~Gd~~~~~e~f~~a~~~l~~~l~~~g~~~ig~~~~~g~~f~~s~~~~~~~fiGl~lD~d~~~e~  151 (169)
T d1oboa_          76 ----VDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDNQSDL  151 (169)
T ss_dssp             ----CCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTTTCGGG
T ss_pred             ----cCCCCCceeEEeccCCcchhhhHhhhHHHHHHHHHhcCCcccccccCCCccccccccccCCeEEecCcCccCcccc
Confidence                36899999999999985 4579999999999999999999886421                   1 243321  2


Q ss_pred             cHHHHHHHHHHHHHHH
Q 038595          206 LDVVFEDWSKRVVAIL  221 (534)
Q Consensus       206 ~e~~f~eW~~~L~~~L  221 (534)
                      .+++++.|.++|.+.+
T Consensus       152 t~eri~~Wv~~i~~e~  167 (169)
T d1oboa_         152 TDDRIKSWVAQLKSEF  167 (169)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHh
Confidence            3678899999988765

>d1fuea_ c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Helicobacter pylori [TaxId: 210]

Probab=99.86  E-value=5.2e-23  Score=189.74  Aligned_cols=136  Identities=19%  Similarity=0.265  Sum_probs=110.9

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      ||.|+|||+|||||.+|+.|++.+.    .+++++++++++.++.+++++||++||||.|++|+++..|+..|++     
T Consensus         2 KI~I~YgS~tGnte~vA~~ia~~~~----~~~v~~i~~~~~~~l~~~d~li~~~sT~g~G~~p~~~~~~~~~l~~-----   72 (163)
T d1fuea_           2 KIGIFFGTDSGNAEAIAEKISKAIG----NAEVVDVAKASKEQFNGFTKVILVAPTAGAGDLQTDWEDFLGTLEA-----   72 (163)
T ss_dssp             CEEEEECCSSSHHHHHHHHHHHHHC----SEEEEEGGGCCHHHHTTCSEEEEEEEBCGGGCBCHHHHHHHTTCCT-----
T ss_pred             eEEEEEECCCcHHHHHHHHHHHhcC----CCeEEehhhccchhhccCceEEEecccCCCCCCCHhHHHHHhhccc-----
Confidence            6999999999999999999999874    5889999999999999999999999999999999999999876653     


Q ss_pred             cccccCCCCCeEEEEEecCcc-hHHHHHHHHHHHHHHHHHcCCceecce--------------------EEeeCCCC--C
Q 038595          149 RVGSLLLSNCKFAVFGVGSKS-YEKTFNMVAKDLSKKMRELGAGEVLPV--------------------VEGDVDGG--E  205 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~-Y~e~Fc~aAK~LDk~L~kLGA~rV~pl--------------------g~gD~~~g--~  205 (534)
                          ..|++++|||||+||+. |.++||.+...+...  ..||+.+...                    ..+|++..  .
T Consensus        73 ----~~l~g~~~avfglGd~~~~~~~f~~a~~~~~~~--~~ga~~vg~~~~~g~~~~~s~a~~~~~~vgl~lD~d~q~~~  146 (163)
T d1fuea_          73 ----SDFANKTIGLVGLGDQDTYSETFAEGIFHIYEK--AKAGKVVGQTSTDGYHFAASKAVEGGKFVGLVIDEDNQDDL  146 (163)
T ss_dssp             ----HHHHTSEEEEEEECCTTTTTBSTTCHHHHHHHH--HTTSEECCCBCCTTCCCSBCTTBSSSSBSSEEECTTTCHHH
T ss_pred             ----ccCCCCeEEEEEecCcccccccchhhhHHHHHH--hcCCccccccCCCCcccchhhhccCCEEEecccccccCccc
Confidence                46899999999999985 567999999998664  4688777542                    12343322  1


Q ss_pred             cHHHHHHHHHHHHH
Q 038595          206 LDVVFEDWSKRVVA  219 (534)
Q Consensus       206 ~e~~f~eW~~~L~~  219 (534)
                      .+.++++|.++|..
T Consensus       147 te~ri~~W~~~lk~  160 (163)
T d1fuea_         147 TDERIAKWVEQVRG  160 (163)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHH
Confidence            35678888877643

>d1rlja_ c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavoprotein NrdI
domain: Flavoprotein NrdI
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=3.7e-22  Score=179.47  Aligned_cols=124  Identities=16%  Similarity=0.133  Sum_probs=92.1

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF  148 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF  148 (534)
                      .|.|+|+|+||||+++|++|..       +.....     ...+...+.+||++||||+|++|+++..|+++|+      
T Consensus        10 ~i~I~Y~S~TGnae~~A~~l~~-------~~~~~~-----~~~~~~~~~~ilitsT~G~Ge~P~~~~~F~~~l~------   71 (135)
T d1rlja_          10 MVQIIFDSKTGNVQRFVNKTGF-------QQIRKV-----DEMDHVDTPFVLVTYTTNFGQVPASTQSFLEKYA------   71 (135)
T ss_dssp             CCEEEECCSSSHHHHHHTTSCC-------SEEEET-----TSCSCCCSCEEEEECCBGGGBCCHHHHHHHHHHG------
T ss_pred             eEEEEEECCchhHHHHHHHHhh-------hhhccc-----ccccccccceEEEecCCCCCCCCHHHHHHHHhcc------
Confidence            4899999999999999988742       222211     1223345678999999999999999999998874      


Q ss_pred             cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHh
Q 038595          149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKS  223 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~  223 (534)
                              +++|||||+||++|+++||.+++.++++|   ++..+... +..... ...+.|.+|.++++..+..
T Consensus        72 --------~~~~aV~G~Gd~~y~~~Fc~a~~~i~~~~---~~~~~~~~-E~~g~~-~D~e~~~~~v~~~~~~~~~  133 (135)
T d1rlja_          72 --------HLLLGVAASGNKVWGDNFAKSADTISRQY---QVPILHKF-ELSGTS-KDVELFTQEVERVVTKSSA  133 (135)
T ss_dssp             --------GGEEEEEEEECGGGGGGTTHHHHHHHHHH---TCCEEEEE-ETTCCH-HHHHHHHHHHHHHHHHHTT
T ss_pred             --------ccceEEEEeCCchHHHHHHHHHHHHHHHh---CCCceEee-ecCCCH-HHHHHHHHHHHHHHHHHHc
Confidence                    35899999999999889999999999875   55554332 222111 1236788888888887643

>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Megasphaera elsdenii [TaxId: 907]

Probab=99.85  E-value=3.9e-21  Score=169.29  Aligned_cols=135  Identities=11%  Similarity=0.166  Sum_probs=115.1

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHH-HHHHHHHHhhcCc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAA-KFFMNWIDESAND  147 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna-~~Fle~L~e~~~D  147 (534)
                      .|.|+|+|+||||+++|+.|++.|.+.|++++++++.+++++++.+++.+||++|||+.|.+|+++ ..|++.+.     
T Consensus         1 ~V~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~ii~g~pT~~~g~~p~~~~~~~~~~~~-----   75 (137)
T d2fz5a1           1 MVEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPAMGSEELEDSVVEPFFTDLA-----   75 (137)
T ss_dssp             CEEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHG-----
T ss_pred             CEEEEEECCChHHHHHHHHHHHHHHhcCCceEEeehhhHHHhhhhccceEEEEEecccCCcCChhHHHHHHHHhc-----
Confidence            389999999999999999999999999999999999999999999999999999999999988754 56766663     


Q ss_pred             ccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHH
Q 038595          148 FRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVA  219 (534)
Q Consensus       148 FRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~  219 (534)
                           ..++|+++++||+|+..|    +.+.+.++++|+.+|++++.+....+... +. +.+.+|.+.|.+
T Consensus        76 -----~~~~gk~~~~fgs~g~~~----~~a~~~l~~~l~~~G~~~v~~~~~~~~~~-d~-~~~~e~g~~lA~  136 (137)
T d2fz5a1          76 -----PKLKGKKVGLFGSYGWGS----GEWMDAWKQRTEDTGATVIGTAIVNEMPD-NA-PECKELGEAAAK  136 (137)
T ss_dssp             -----GGCSSCEEEEEEEESSCC----SHHHHHHHHHHHHTTCEEEEEEEEESSSS-SC-THHHHHHHHHHT
T ss_pred             -----cccCCCeEEEEEecCCCc----CHHHHHHHHHHHHCCCEEeeceeecCCCC-hH-HHHHHHHHHHhc
Confidence                 257899999999988766    45678999999999999999988887654 33 457777766643

>d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.83  E-value=2.8e-20  Score=163.44  Aligned_cols=136  Identities=17%  Similarity=0.216  Sum_probs=115.6

Q ss_pred             EEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchH-HHHHHHHHHhhcCcc
Q 038595           70 GKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEA-AKFFMNWIDESANDF  148 (534)
Q Consensus        70 VlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdn-a~~Fle~L~e~~~DF  148 (534)
                      +.|+|+|+||||+++|+.|++.|.+.|++++++++++++++++.+.+.+||++|||+.|.+|++ +..|++.+.      
T Consensus         1 i~IvY~S~tGnT~~vA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~~~~i~g~pt~~~g~~p~~~~~~~~~~~~------   74 (138)
T d5nula_           1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAMTDEVLEESEFEPFIEEIS------   74 (138)
T ss_dssp             CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHG------
T ss_pred             CEEEEECcChHHHHHHHHHHHHHHhcCCcceecccccccccccccCCeEEEEEeccCCCCCChHHHHHHHHHhC------
Confidence            4799999999999999999999999999999999999999999999999999999999998875 444544432      


Q ss_pred             cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHH
Q 038595          149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVA  219 (534)
Q Consensus       149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~  219 (534)
                          ..++|+.+++||...  |  .||.+.+.++++|.++|++++.+...++...++..+.+.+|.++|.+
T Consensus        75 ----~~~~gk~~~~f~s~g--~--~~~~~~~~~~~~l~~~G~~~v~~~~~~~~~p~e~~~~~~~~g~~lA~  137 (138)
T d5nula_          75 ----TKISGKKVALFGSYG--W--GDGKWMRDFEERMNGYGCVVVETPLIVQNEPDEAEQDCIEFGKKIAN  137 (138)
T ss_dssp             ----GGCTTCEEEEEEEES--S--SCSHHHHHHHHHHHHTTCEECSCCEEEESSCGGGHHHHHHHHHHHHT
T ss_pred             ----ccCCCCcEEEEEEec--C--CCCHHHHHHHHHHHHCCCEEecCcEEECCCCcHHHHHHHHHHHHHhc
Confidence                357899999999632  2  35788999999999999999999999987755455678888887753

>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=99.79  E-value=3.5e-19  Score=159.00  Aligned_cols=143  Identities=13%  Similarity=0.076  Sum_probs=120.0

Q ss_pred             CCcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCcc----CcCCCCeEEEEeccCCCCCCchHHHHHHHHHH
Q 038595           67 PNKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPE----DLSKEALVLIVASSWEDGKPPEAAKFFMNWID  142 (534)
Q Consensus        67 ~~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~----dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~  142 (534)
                      .++++|+|+|+||||+++|+.|++.|.+.|+++.++++.+.+.+    ++.+++++||++|||+ |.+++.+..|++.+.
T Consensus         2 ~~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~~~~~~~~~l~~~d~vi~Gspt~~-~~~~~~~~~~l~~~~   80 (152)
T d1e5da1           2 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHN-NGILPYVAGTLQYIK   80 (152)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCCBT-TBCCHHHHHHHHHHH
T ss_pred             CCeEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccCChhhhccchhhCCEEEEeccccC-CccCchhHHHHHHhh
Confidence            45799999999999999999999999999999999999998765    4567899999999998 555556788988876


Q ss_pred             hhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHHHHH
Q 038595          143 ESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVVAIL  221 (534)
Q Consensus       143 e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~~~L  221 (534)
                      ..         .++++.+++||.    |+ +||.+.+.+.+.|..+|++++.+...++...+ ...+.+.+|.++|.+.|
T Consensus        81 ~~---------~~~~k~~~~fgs----~g-~~~~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~e~g~~i~~~l  146 (152)
T d1e5da1          81 GL---------RPQNKIGGAFGS----FG-WSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQLKTMAQTIARAL  146 (152)
T ss_dssp             HT---------CCCSCEEEEEEE----ES-SSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred             cc---------CCCCCEEEEEEe----eC-CCCccHHHHHHHHHHCCCEEecCcEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence            53         578999999996    43 56899999999999999999998888876532 23456889999999988


Q ss_pred             Hhc
Q 038595          222 KSG  224 (534)
Q Consensus       222 ~~~  224 (534)
                      +..
T Consensus       147 k~k  149 (152)
T d1e5da1         147 KAK  149 (152)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            753

>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: ROO-like flavoprotein TM0755, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=1.4e-19  Score=161.16  Aligned_cols=139  Identities=14%  Similarity=0.059  Sum_probs=112.2

Q ss_pred             CCCcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccC-------cCCCCeEEEEeccCCCCCCchHHHHHH
Q 038595           66 NPNKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPED-------LSKEALVLIVASSWEDGKPPEAAKFFM  138 (534)
Q Consensus        66 ~~~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d-------L~~~~lvIfv~STYg~G~pPdna~~Fl  138 (534)
                      .+++|+|+|+|+||||+.+|+.|++.|.+.|+.++++++.+++..+       +.+++.+||++|||+.+.+| .+..|+
T Consensus         2 ~~~kv~IiY~S~tGnTe~~A~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~d~iiigspt~~~~~~~-~~~~~l   80 (148)
T d1vmea1           2 KKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYEAEIHP-LMRFTL   80 (148)
T ss_dssp             CTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECEETTEECH-HHHHHH
T ss_pred             CCCEEEEEEECCCcHHHHHHHHHHHHHHhCCCeEEEEecccccccchhHhhhhHHHCCEeEEEecccCCccCc-hHHHHH
Confidence            4567999999999999999999999999999999999999887544       67889999999999955554 577888


Q ss_pred             HHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHH
Q 038595          139 NWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVV  218 (534)
Q Consensus       139 e~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~  218 (534)
                      ..|.+.         .++|+.+++||.    |+ +||.+++.+++.|.++|++++.+. .+.....+ +..+++|.+.+.
T Consensus        81 ~~~~~~---------~~~~k~~~~fgs----~g-~~~~a~~~~~~~l~~~G~~~v~~~-~~~~~~~d-e~~~~e~~~~~~  144 (148)
T d1vmea1          81 LEIIDK---------ANYEKPVLVFGV----HG-WAPSAERTAGELLKETKFRILSFT-EIKGSNMD-ERKIEEAISLLK  144 (148)
T ss_dssp             HHHHHH---------CCCCCEEEEEEE----CC-CCCCC-CCHHHHHHTSSCEEEEEE-EECSTTCC-THHHHHHHHHHH
T ss_pred             HHHhhc---------ccCCCEEEEEEc----CC-CccchHHHHHHHHHHcCCcEEeeE-EEeCCCCC-HHHHHHHHHHHH
Confidence            887653         578999999996    54 678999999999999999988654 44333222 567888888777


Q ss_pred             HHH
Q 038595          219 AIL  221 (534)
Q Consensus       219 ~~L  221 (534)
                      +.|
T Consensus       145 k~l  147 (148)
T d1vmea1         145 KEL  147 (148)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            765

>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Nitric oxide reductase C-terminal domain
species: Moorella thermoacetica [TaxId: 1525]

Probab=99.73  E-value=5.3e-18  Score=150.73  Aligned_cols=141  Identities=11%  Similarity=0.013  Sum_probs=114.7

Q ss_pred             CCcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCc----CCCCeEEEEeccCCCCCCchHHHHHHHHHH
Q 038595           67 PNKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDL----SKEALVLIVASSWEDGKPPEAAKFFMNWID  142 (534)
Q Consensus        67 ~~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL----~~~~lvIfv~STYg~G~pPdna~~Fle~L~  142 (534)
                      +.|++|+|+|+||||+++|+.|++.|.+.|+.++++++.+.+++++    .+++++||++|||. |.+|+.+..|++.|.
T Consensus         2 k~K~lIvY~S~~GnT~~vA~~Ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gspt~~-g~~~~~~~~~l~~l~   80 (149)
T d1ycga1           2 KAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTIN-NDILPVVSPLLDDLV   80 (149)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEEECCCBT-TBCCGGGHHHHHHHH
T ss_pred             CcEEEEEEECCCcHHHHHHHHHHHHHHhcCCeeEEEEccccchHHHhhhhhhCCeEEEEeeccc-CCCCHHHHHHHHHHh
Confidence            4679999999999999999999999999999999999999987664    56899999999998 555557889998886


Q ss_pred             hhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecce-EEeeCCCC-CcHHHHHHHHHHHHHH
Q 038595          143 ESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPV-VEGDVDGG-ELDVVFEDWSKRVVAI  220 (534)
Q Consensus       143 e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~pl-g~gD~~~g-~~e~~f~eW~~~L~~~  220 (534)
                      ..         .++++.+++||.    |+ +++.+.+.+.+.|..+|++.+... ..+....+ +..+.+.+|.++|.+.
T Consensus        81 ~~---------~~~~k~~~~fgs----~g-~~g~a~~~l~~~l~~~g~~~v~~~~~~~~~~P~~~dl~~~~e~g~~ia~k  146 (149)
T d1ycga1          81 GL---------RPKNKVGLAFGA----YG-WGGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRCYELGRKIAAR  146 (149)
T ss_dssp             HH---------CCSSCEEEEEEE----ES-SSCCHHHHHHHHHHHTTCEESCSSCCEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred             cc---------ccCCCEEEEEec----cc-CCchhHHHHHHHHHHCCCEEeccceEEEcccCCHHHHHHHHHHHHHHHHH
Confidence            53         578999999995    33 447889999999999999998753 44443322 2235678899998887


Q ss_pred             HH
Q 038595          221 LK  222 (534)
Q Consensus       221 L~  222 (534)
                      |+
T Consensus       147 l~  148 (149)
T d1ycga1         147 IA  148 (149)
T ss_dssp             HC
T ss_pred             hh
Confidence            74

>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Flavodoxin FldA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.44  E-value=3.3e-13  Score=125.71  Aligned_cols=117  Identities=12%  Similarity=-0.000  Sum_probs=98.6

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhh-CCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCc
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTS-NDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESAND  147 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~-~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~D  147 (534)
                      +|+|+|.|.||||+++|+.|++.+.+ .|++++++++.+.++++|..++.+||++|||. |.++..++.|++.+....  
T Consensus         3 kilivy~S~~G~T~~~A~~ia~g~~~~~g~~v~~~~~~~~~~~dl~~~d~iiiGsPty~-g~~~~~~~~fld~~~~~~--   79 (184)
T d2arka1           3 KVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLWADGLAVGSPTNM-GLVSWKMKRFFDDVLGDL--   79 (184)
T ss_dssp             EEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHHCSEEEEEEECBT-TBCCHHHHHHHHHTGGGT--
T ss_pred             eEEEEEECCCcHHHHHHHHHHHhhhhccCceEEEeecccccccchhhCcEEEEecCccc-cccCHHHHHHHHHHHHHH--
Confidence            59999999999999999999999987 69999999999999999999999999999996 888888999988875421  


Q ss_pred             ccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCcee
Q 038595          148 FRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEV  193 (534)
Q Consensus       148 FRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV  193 (534)
                          ...|+|+.+++||.+....+ ....+...+...|..+|...+
T Consensus        80 ----~~~l~gK~~a~f~s~g~~~g-G~e~al~~~~~~l~~~G~~vv  120 (184)
T d2arka1          80 ----WGEIDGKIACAFSSSGGWGG-GNEVACMSILTMLMNFGFLVF  120 (184)
T ss_dssp             ----TTSCTTCEEEEEEEESSBTS-SHHHHHHHHHHHHHHTTCEEC
T ss_pred             ----HHHhCCeEEEEEEccCCCCc-cHHHHHHHhhhHhhhCCCEEe
Confidence                13689999999998544332 234467889999999999866

>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: MoCo biosynthesis proteins
domain: Molybdenum cofactor biosynthesis protein A MoaA
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.07  E-value=7.7e-11  Score=113.82  Aligned_cols=75  Identities=19%  Similarity=0.277  Sum_probs=59.5

Q ss_pred             eEEEeecCCCCCCccHHHHHHHHHhcC-CcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCCCchh
Q 038595          456 HCALSLVGEPIMYPEINTLVDELHRRR-ISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLFGDFW  530 (534)
Q Consensus       456 h~alSl~GEPlLyp~L~elI~~lk~~g-i~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~~~~w  530 (534)
                      ++.++ .|||+|++++.+++..+.+.+ +.+.++|||++  ++.++.|..  ++.+.||||+.++++|+++++.  +.++
T Consensus        67 ~v~~~-GGEp~l~~~~~e~i~~~~~~~~~~~~~~Tng~ll~~~~~~~l~~~g~~~i~iSldg~~~e~~~~~rg~--~g~~  143 (327)
T d1tv8a_          67 KIRIT-GGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNR--NIKA  143 (327)
T ss_dssp             EEEEE-SSCGGGSTTHHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSS--CCCH
T ss_pred             EEEeC-CCcccccccHHHHHHHHhhhccccccccccccccchhHHHHHHHcCCCEEeeecccCCHHHhhhheee--cccc
Confidence            34444 399999999999998887764 56778888887  677878765  8999999999999999999873  4455


Q ss_pred             hhc
Q 038595          531 ERF  533 (534)
Q Consensus       531 ~~~  533 (534)
                      +++
T Consensus       144 ~~~  146 (327)
T d1tv8a_         144 TTI  146 (327)
T ss_dssp             HHH
T ss_pred             chh
Confidence            543

>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.05  E-value=1.3e-10  Score=107.68  Aligned_cols=95  Identities=18%  Similarity=0.196  Sum_probs=77.2

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCC-------------------------ccCcCCCCeEEEEec
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYE-------------------------PEDLSKEALVLIVAS  123 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d-------------------------~~dL~~~~lvIfv~S  123 (534)
                      ||+|+|.|.||||+++|+.+++.+++.|.+++++++.+.+                         ++++.+++.+||++|
T Consensus         4 kilivy~S~~GnT~~la~~ia~g~~~~G~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i~~aD~ii~gsP   83 (201)
T d1ydga_           4 KLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSP   83 (201)
T ss_dssp             EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHHHHhcCCEEEEEEccccCccchhhhhhHhhcCCCcccCchhhhhhhHhhCCEeEEecc
Confidence            5999999999999999999999999999999999998753                         223456899999999


Q ss_pred             cCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcc
Q 038595          124 SWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKS  169 (534)
Q Consensus       124 TYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~  169 (534)
                      ||. |.++..++.|++++....     ....|.|+..++|+.+-..
T Consensus        84 vy~-~~~s~~~k~flDr~~~~~-----~~~~l~gK~~~~~~s~g~~  123 (201)
T d1ydga_          84 TRF-GGATSQMRAFIDTLGGLW-----SSGKLANKTFSAMTSAQNV  123 (201)
T ss_dssp             EET-TEECHHHHHHHHTTHHHH-----HTTTTTTCEEEEEEEESST
T ss_pred             eee-eeccchhHHHHHHhhhHH-----hccccCCceeeeeeccccC
Confidence            999 555666899998764332     1346899999999875443

>d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.02  E-value=5e-10  Score=102.07  Aligned_cols=118  Identities=13%  Similarity=0.063  Sum_probs=87.2

Q ss_pred             cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCC-------------------ccCcCCCCeEEEEeccCCCCC
Q 038595           69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYE-------------------PEDLSKEALVLIVASSWEDGK  129 (534)
Q Consensus        69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d-------------------~~dL~~~~lvIfv~STYg~G~  129 (534)
                      ||+|+|.|++|||+.+|+.+++.+++.|++++++++.+++                   ++++..++.+||++|||. |.
T Consensus         3 Kvliiy~S~~GnT~~la~~i~~g~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~ii~gsP~y~-~~   81 (196)
T d2a5la1           3 YILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRF-GN   81 (196)
T ss_dssp             EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECBT-TB
T ss_pred             eEEEEEeCCCcHHHHHHHHHHHHHhhcCCEEEEEeccccchHHHHhccccccccccccchhhhhhcCEEEEecchhh-cc
Confidence            6999999999999999999999999999999999997642                   334567899999999999 56


Q ss_pred             CchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCcee
Q 038595          130 PPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEV  193 (534)
Q Consensus       130 pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV  193 (534)
                      +|..++.|++.+.....     ...+.++..+.+..+-...+ ....+...+...+...|...+
T Consensus        82 ~~~~~k~flDr~~~~~~-----~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~v  139 (196)
T d2a5la1          82 MASPLKYFLDGTSSLWL-----TGSLVGKPAAVFTSTASLHG-GQETTQLSMLLPLLHHGMLVL  139 (196)
T ss_dssp             CCHHHHHHHHTCHHHHH-----HTTTTTCEEEEEEEBSCSSC-CHHHHHHHHHHHHHHTTCEEC
T ss_pred             ccHHHHHHHHHhhhHhh-----cCCccCceeEEeecccccCC-chHHHHHHHHHHHhhhceeee
Confidence            66678899887654321     23456666666665544332 223456666667777666554

>d1sqsa_ c.23.5.5 (A:) Hypothetical protein SP1951 {(Streptococcus pneumoniae) [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Hypothetical protein SP1951
domain: Hypothetical protein SP1951
species: (Streptococcus pneumoniae) [TaxId: 1313]

Probab=98.42  E-value=1.3e-06  Score=82.49  Aligned_cols=146  Identities=14%  Similarity=0.149  Sum_probs=103.6

Q ss_pred             cEEEEEECcc--chHHHHHHHHHHHHhhCC-CceEEECCCCCCccC----------------------------cCCCCe
Q 038595           69 KGKLFFISQT--GTSKTLAKRLHALLTSND-LLFDLVDPQTYEPED----------------------------LSKEAL  117 (534)
Q Consensus        69 kVlI~YgSqT--GtTE~lAe~La~~L~~~G-l~v~V~dL~d~d~~d----------------------------L~~~~l  117 (534)
                      +|+|+.||..  |+|.++|+.+.+.|.+.+ +++.++++.+.+...                            +...+.
T Consensus         3 kI~ii~gS~r~~s~t~~l~~~~~~~l~~~~~~e~~~~~l~~~~i~~~~~~~~~c~~~~~~~~~~~d~~~~i~~~i~~AD~   82 (232)
T d1sqsa_           3 KIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDI   82 (232)
T ss_dssp             EEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSE
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEEeccccccchhhhHHHHhhhcccccccchHHHHHHHHHHHhCCE
Confidence            5899999965  899999999999998765 688999987665321                            123689


Q ss_pred             EEEEeccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceE
Q 038595          118 VLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVV  197 (534)
Q Consensus       118 vIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg  197 (534)
                      +||++|+|+ +..|..++.|++++....+     ...|.|+..+++..+-....   ..+...+...|..+|++.+...+
T Consensus        83 iI~~sP~y~-~~~s~~lK~~iDr~~~~~~-----~~~l~gK~~~~i~t~g~~g~---~~~~~~l~~~l~~~G~~~v~~~~  153 (232)
T d1sqsa_          83 IIISSPVYL-QNVSVDTKNFIERIGGWSH-----LFRLAGKFVVTLDVAESNGS---DNVSEYLRDIFSYMGGQILHQVS  153 (232)
T ss_dssp             EEEEEEECS-SSCCHHHHHHHHHTGGGTT-----TTTTTTCEEEEEEEESSCCS---CCHHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEEEecccc-CcchHHHHHHHHHhHhhhc-----cccccCCeEEEEEEccCCcH---HHHHHHHHHHHHHCCCEEeceeE
Confidence            999999999 5666679999999865432     34689999888875322222   24577788899999999887555


Q ss_pred             EeeCCCCCcHHHHHHHHHHHHHHHHh
Q 038595          198 EGDVDGGELDVVFEDWSKRVVAILKS  223 (534)
Q Consensus       198 ~gD~~~g~~e~~f~eW~~~L~~~L~~  223 (534)
                      .........+..+.+-...+...+..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~i~~  179 (232)
T d1sqsa_         154 ITNSLKDIAEAQLMEATYKIEDVLEG  179 (232)
T ss_dssp             EEGGGGGGHHHHHHHHHHHHHHHHTT
T ss_pred             EecCCCchhhHHHHHHHHHHHHHHhc
Confidence            43322222345555555566665543

>d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: NADPH-dependent FMN reductase
domain: Putative arsenical resistance protein
species: Shigella flexneri [TaxId: 623]

Probab=98.39  E-value=2.1e-06  Score=82.01  Aligned_cols=119  Identities=14%  Similarity=0.035  Sum_probs=91.0

Q ss_pred             CCcEEEEEEC--ccchHHHHHHHHHHHHhhCCCceEEECCCCCCccC----------------cCCCCeEEEEeccCCCC
Q 038595           67 PNKGKLFFIS--QTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPED----------------LSKEALVLIVASSWEDG  128 (534)
Q Consensus        67 ~~kVlI~YgS--qTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d----------------L~~~~lvIfv~STYg~G  128 (534)
                      +.||+|++||  ..+++.++|+.+.+.+++.|.+++++|+.+++..+                +...+.+||++|+|+ |
T Consensus        34 ~~KIl~I~GS~R~~s~s~~la~~~~~~l~~~G~ev~~idL~dlpl~~~~~~~~~~~v~~l~~~l~~AD~vIi~tP~Y~-~  112 (233)
T d2fzva1          34 PVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERH-G  112 (233)
T ss_dssp             CCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEET-T
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHHHHHHhhhcCeEEEEEccCCCCCCCcccccCCHHHHHHHHHHhhcCeeEEEccccc-c
Confidence            4479999999  46789999999999999999999999999887432                124689999999999 6


Q ss_pred             CCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCcee
Q 038595          129 KPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEV  193 (534)
Q Consensus       129 ~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV  193 (534)
                      .+|..++.|++|+.....+    ...+.|+.+++++.+....+   -.+...+...|..+|+..+
T Consensus       113 ~~~~~lKn~iD~~~~~~~~----~~~~~gK~~~ii~~sgg~gg---~~a~~~Lr~~l~~lg~~vv  170 (233)
T d2fzva1         113 QITSVMKAQIDHLPLEMAG----IRPTQGRTLAVMQVSGGSQS---FNAVNTLRLLGRWMRMFTI  170 (233)
T ss_dssp             EECHHHHHHHHHSCSCBTT----BCSSTTCEEEEEEECSSSCC---CHHHHHHHHHHHHTTCEEC
T ss_pred             CcHHHHHhhHHhccccccc----chhccCceeEeeeeccCcch---HHHHHHHHHHHhhCCCEEE
Confidence            6777899999998543222    34678999998877644322   1234456777888898655

>d1rlia_ c.23.5.6 (A:) Hypothetical protein YwqN {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Hypothetical protein YwqN
domain: Hypothetical protein YwqN
species: Bacillus subtilis [TaxId: 1423]

Probab=98.37  E-value=7.7e-07  Score=78.83  Aligned_cols=120  Identities=13%  Similarity=0.066  Sum_probs=81.9

Q ss_pred             cEEEEEECc--cchHHHHHHHHHHHHhhCCCceEEECCCCCCcc------------------------CcCCCCeEEEEe
Q 038595           69 KGKLFFISQ--TGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPE------------------------DLSKEALVLIVA  122 (534)
Q Consensus        69 kVlI~YgSq--TGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~------------------------dL~~~~lvIfv~  122 (534)
                      ||+|++||-  .|||+.+|+.+.+     |++++.+++.+++..                        .+...+.+||++
T Consensus         1 KIlii~gSpr~~gnt~~l~~~~~~-----g~e~e~i~l~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~l~~AD~ii~~s   75 (179)
T d1rlia_           1 KIAVINGGTRSGGNTDVLAEKAVQ-----GFDAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILIFAT   75 (179)
T ss_dssp             CEEEEESSCSSCCHHHHHHHHHHT-----TTCCEEEEC-----------------------CHHHHHHHHHTCSEEEEEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHc-----CCCeeEEEhhhhccCCccchhhhhcCCCCccHHHHHHHHHHHhCCeEEEee
Confidence            589999994  8999999998875     556677777665431                        133578999999


Q ss_pred             ccCCCCCCchHHHHHHHHHHhhcCcccc--cccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595          123 SSWEDGKPPEAAKFFMNWIDESANDFRV--GSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL  194 (534)
Q Consensus       123 STYg~G~pPdna~~Fle~L~e~~~DFRv--~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~  194 (534)
                      |.|. +.+|..++.|++++......++.  ....+++++++++..|-..+...+-.+...+...|.-+|.+.+.
T Consensus        76 P~y~-~~~~a~lK~~iDr~~~~~~~~~~~~~~~~~~~K~~~~i~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~~  148 (179)
T d1rlia_          76 PIYW-FGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMSFKG  148 (179)
T ss_dssp             ECBT-TBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHTCEEEE
T ss_pred             cccC-CCccHHHHHHHHHHHHhccccccCCcccccCCCEEEEEEecCCCCcchHHHHHHHHHHHHhhcCCEEcc
Confidence            9999 66777799999987654333222  12457788888887664444324445566788888888987554

>d1t0ia_ c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: NADPH-dependent FMN reductase
domain: Hypothetical protein Ylr011wp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.20  E-value=1.6e-06  Score=78.92  Aligned_cols=111  Identities=14%  Similarity=0.104  Sum_probs=85.6

Q ss_pred             cEEEEEECc--cchHHHHHHHHHHHHhh------CCCceEEECCCCCCccC-----------------------------
Q 038595           69 KGKLFFISQ--TGTSKTLAKRLHALLTS------NDLLFDLVDPQTYEPED-----------------------------  111 (534)
Q Consensus        69 kVlI~YgSq--TGtTE~lAe~La~~L~~------~Gl~v~V~dL~d~d~~d-----------------------------  111 (534)
                      ||+|++||.  .+++.++|+.+.+.|++      .|++++++|+.+++..-                             
T Consensus         2 KIlvI~GS~R~~s~~~~la~~~~~~l~~~~~~~~~g~~v~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (185)
T d1t0ia_           2 KVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRI   81 (185)
T ss_dssp             EEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCCChHHHHHHHHHHHHHHhhhhcCCCcEEEEEeccccCccccchhhhccccccccccccCCHHHHHHHHH
Confidence            589999995  68999999999999986      37899999986543210                             


Q ss_pred             cCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCc
Q 038595          112 LSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAG  191 (534)
Q Consensus       112 L~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~  191 (534)
                      +...+.+||++|.|+ +.+|.-.+.|++|+.          ..+.|+.+++++.|.+.-    -.+...+...|..+|+.
T Consensus        82 i~~AD~iIi~tP~Y~-~~~~~~lK~~iD~~~----------~~~~gKpv~ivs~g~~gg----~~a~~~L~~~l~~~g~~  146 (185)
T d1t0ia_          82 VNALDIIVFVTPQYN-WGYPAALKNAIDRLY----------HEWHGKPALVVSYGGHGG----SKCNDQLQEVLHGLKMN  146 (185)
T ss_dssp             HHTCSEEEEEEECBT-TBCCHHHHHHHHTCS----------TTTTTCEEEEEEEETTTT----HHHHHHHHHHHHHTTCE
T ss_pred             HHhCCCeEEEEeeec-CCCcHHHHHHHHHhh----------HHHCCCEEEEEEEcCcch----HHHHHHHHHHHHHCCCE
Confidence            224689999999999 666667888988863          257899999998875532    13556788899999997


Q ss_pred             eec
Q 038595          192 EVL  194 (534)
Q Consensus       192 rV~  194 (534)
                      .+.
T Consensus       147 vv~  149 (185)
T d1t0ia_         147 VIG  149 (185)
T ss_dssp             EEE
T ss_pred             EcC
Confidence            663

>d1nni1_ c.23.5.4 (1:) Azobenzene reductase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: NADPH-dependent FMN reductase
domain: Azobenzene reductase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.12  E-value=1.2e-05  Score=71.49  Aligned_cols=108  Identities=14%  Similarity=0.174  Sum_probs=79.3

Q ss_pred             cEEEEEEC--ccchHHHHHHHHHHHHhhCCCceEEECCCCCCccC-------------------cCCCCeEEEEeccCCC
Q 038595           69 KGKLFFIS--QTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPED-------------------LSKEALVLIVASSWED  127 (534)
Q Consensus        69 kVlI~YgS--qTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d-------------------L~~~~lvIfv~STYg~  127 (534)
                      ||++++||  ..|+|+++++.+.+.+.     ++++|+.+++...                   +...+.+||++|.|+ 
T Consensus         2 KIl~I~GS~r~~s~t~~l~~~~~~~~~-----~~~idl~~~~lp~~~~~~~~~~~~~~~~l~~~i~~aD~vIi~sP~Y~-   75 (171)
T d1nni1_           2 NMLVINGTPRKHGRTRIAASYIAALYH-----TDLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEYH-   75 (171)
T ss_dssp             CEEEEECCCCTTCHHHHHHHHHHHHHT-----CEEEETTTSCCCCCCCCHHHHTSHHHHHHHHHHHHCSEEEEEEECBT-
T ss_pred             EEEEEECCCCCcChHHHHHHHHHhhCC-----ceEEEcccCCCCCccccccccccHHHHHHHHHhhccCceEEechHHh-
Confidence            48999999  78999999999988774     6788888765321                   134689999999999 


Q ss_pred             CCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCcee
Q 038595          128 GKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEV  193 (534)
Q Consensus       128 G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV  193 (534)
                      |.+|..++.|++|+..         ..++++.+++++.+-...+ . -.+...+...|..+|+..+
T Consensus        76 ~~~~~~lKn~iD~~~~---------~~~~~K~~~~~~~s~g~~g-g-~~~~~~l~~~l~~l~~~v~  130 (171)
T d1nni1_          76 SGMSGALKNALDFLSS---------EQFKYKPVALLAVAGGGKG-G-INALNNMRTVMRGVYANVI  130 (171)
T ss_dssp             TBCCHHHHHHHHHCCH---------HHHTTCEEEEEEECCSTTT-T-HHHHHHHHHHHHHTTCEEC
T ss_pred             cccchhHhHHHHHhcc---------cccCCCeEEEEEEeeCccc-h-HHHHHHHHHHHHHCCCEEE
Confidence            6677779999998742         3578888888876322221 1 2345567778888998654

>d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: NADPH-dependent FMN reductase
domain: Hypothetical protein PA1204
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.02  E-value=2.6e-05  Score=70.25  Aligned_cols=116  Identities=11%  Similarity=0.076  Sum_probs=86.8

Q ss_pred             cEEEEEEC--ccchHHHHHHHHHHHHhhCCCceEEECCCCCCccC-------c-----------CCCCeEEEEeccCCCC
Q 038595           69 KGKLFFIS--QTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPED-------L-----------SKEALVLIVASSWEDG  128 (534)
Q Consensus        69 kVlI~YgS--qTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d-------L-----------~~~~lvIfv~STYg~G  128 (534)
                      ||+++.||  ..++++.+|+.+.+.+. .|.+++++|+.+++.-+       +           ...+.+||++|.|+ |
T Consensus         2 KIl~i~GS~r~~s~s~~l~~~~~~~~~-~~~ev~~idl~dlP~~~~d~~~~~~~~~~~~~~~~i~~aD~iii~sP~y~-~   79 (174)
T d1rtta_           2 KVLGISGSLRSGSYNSAALQEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYN-Y   79 (174)
T ss_dssp             EEEEEESCCSTTCHHHHHHHHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEET-T
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHhcC-CCCEEEEEecccCCCccccccccCCCHHHHHHHHHhhcCCeEEEEccchh-c
Confidence            48899999  46679999999888765 49999999999874211       1           23589999999999 6


Q ss_pred             CCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595          129 KPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL  194 (534)
Q Consensus       129 ~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~  194 (534)
                      ..|.-.+.|++|+..      .+...++|+.+++++.+-..++  .-.+...+...|..+|+..+-
T Consensus        80 s~~~~lKn~iD~l~~------~~~~~~~gK~~~~i~~sgG~~~--~~~~~~~l~~~l~~~g~~~i~  137 (174)
T d1rtta_          80 SMAGVLKNAIDWASR------PPEQPFSGKPAAILGASAGRFG--TARAQYHLRQTLVFLDVHPLN  137 (174)
T ss_dssp             EECHHHHHHHHHHTC------SSSCTTTTCEEEEEEECSSTTT--THHHHHHHHHHHHHHTCEECC
T ss_pred             cccHHHHHHHHHHhc------ccccccCCCEEEEEEECCCccc--hHHHHHHHHHHHHHCCCEEcC
Confidence            666679999999853      2345799999999987433221  124566677888889997763

>d2z98a1 c.23.5.3 (A:1-200) ACP phosphodiesterase AcpD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Quinone reductase
domain: ACP phosphodiesterase AcpD
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=0.00026  Score=64.13  Aligned_cols=150  Identities=14%  Similarity=0.038  Sum_probs=98.6

Q ss_pred             cEEEEEECcc--c-hHHHHHHHHHHHHhhC--CCceEEECCCCCCccC--------------------------------
Q 038595           69 KGKLFFISQT--G-TSKTLAKRLHALLTSN--DLLFDLVDPQTYEPED--------------------------------  111 (534)
Q Consensus        69 kVlI~YgSqT--G-tTE~lAe~La~~L~~~--Gl~v~V~dL~d~d~~d--------------------------------  111 (534)
                      ||+|+=+|--  | +|.++++.+.+.+++.  +.+++++|+.+.++..                                
T Consensus         2 KiLvi~~Spr~~~S~S~~L~~~f~e~~~~~~~~~eV~~~DL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   81 (200)
T d2z98a1           2 KVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLAANPIPVLDGELVGALRPSDAPLTPRQQEALALSDELIA   81 (200)
T ss_dssp             EEEEEECCSSGGGCHHHHHHHHHHHHHHHHSTTSEEEEEETTTTTCCCCCHHHHHHC------CCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcCCHHHHhhhcCCccccCHHHHHHHHHHHHHHH
Confidence            5899999985  3 7899999999999875  6778888988765311                                


Q ss_pred             -cCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCccccc----ccCCCCCeEEEEEecCcchH-HHHHHHHHHHHHHH
Q 038595          112 -LSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVG----SLLLSNCKFAVFGVGSKSYE-KTFNMVAKDLSKKM  185 (534)
Q Consensus       112 -L~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~----~~~Lkgl~yAVFGLGDs~Y~-e~Fc~aAK~LDk~L  185 (534)
                       +...+.+||++|.|. +.+|...+.|++++-.....|+..    ...+.+++..|+..+...|. ..+..+...+...|
T Consensus        82 ~i~~AD~iv~~sP~y~-~~~pa~lK~~IDr~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (200)
T d2z98a1          82 ELKAHDVIVIAAPMYN-FNISTQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVTPYLSTFL  160 (200)
T ss_dssp             HHHHCSEEEEECCCBT-TBCCHHHHHHHHHHCCBTTTEEEETTEEEECCCSCEEEEEEECSSCCTTSTTCCHHHHHHHHH
T ss_pred             HHHhcCcEEEEEcccc-ccCCHHHHHHHHHhhcCCccccccCCCchhcccCceEEEEEecCCCccccchhhhHHHHHHHH
Confidence             123789999999999 556677999999985433333322    23466777777765544442 13445566677888


Q ss_pred             HHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHH
Q 038595          186 RELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAIL  221 (534)
Q Consensus       186 ~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L  221 (534)
                      .-+|++.+... ..+....+ .+..+++.++....+
T Consensus       161 ~~~G~~~v~~i-~~~g~~~~-~e~~~~~~~~A~~~~  194 (200)
T d2z98a1         161 GFIGITDVKFV-FAEGIAYG-PEMAAKAQSDAKAAI  194 (200)
T ss_dssp             HHTTCCCEEEE-EECCTTSC-HHHHHHHHHHHHHHH
T ss_pred             HhCCCeEEEEE-EEecccCC-HHHHHHHHHHHHHHH
Confidence            88999877543 33322222 334555555544443

>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Quinone reductase
domain: Quinone reductase type 2 (menadione reductase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00026  Score=65.15  Aligned_cols=156  Identities=13%  Similarity=0.046  Sum_probs=96.9

Q ss_pred             cEEEEEECc--cchHHHHHHHHHHHHhhCCCceEEECCCCCCcc------------------------------------
Q 038595           69 KGKLFFISQ--TGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPE------------------------------------  110 (534)
Q Consensus        69 kVlI~YgSq--TGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~------------------------------------  110 (534)
                      ||+|+|||-  .+.|..+++.+.+.+++.|.+++++||.+..+.                                    
T Consensus         4 KiLiI~ghp~~~S~t~~l~~~~~~~~~~~g~ev~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   83 (230)
T d2qwxa1           4 KVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASD   83 (230)
T ss_dssp             EEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBCHH
T ss_pred             EEEEEEeCCCCccHHHHHHHHHHHHHHhCCCEEEEEEccccCCcccchHHHhhhccCchhhhcchhhhhhhhhcccccHH
Confidence            599999984  467899999999999999999999999765431                                    


Q ss_pred             ------CcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcccc----cccCCCCCeEEE-EEecCc--chH-HHHHH
Q 038595          111 ------DLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRV----GSLLLSNCKFAV-FGVGSK--SYE-KTFNM  176 (534)
Q Consensus       111 ------dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv----~~~~Lkgl~yAV-FGLGDs--~Y~-e~Fc~  176 (534)
                            .|...+.+||++|.|. +.+|.-++.|++++-....-|+.    ....++++++.+ +..|..  .|. ..+..
T Consensus        84 i~~~~~~l~~AD~iv~~~P~y~-~~~pa~lK~~iDrV~~~g~af~~~~~~~~g~l~~kk~~~i~t~g~~~~~~~~~g~~~  162 (230)
T d2qwxa1          84 ITDEQKKVREADLVIFQFPLYW-FSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNG  162 (230)
T ss_dssp             HHHHHHHHHHCSEEEEEEECBT-TBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTGGGSTTSTTC
T ss_pred             HHHHHHHHHhCCEEEEEeCccc-ccCCHHHHHHHHHhcccCcccccCCCCCcccccCCeEEEEeccCCchhhcccccccc
Confidence                  1234689999999999 55666688888875432112221    234567776554 445533  121 11222


Q ss_pred             HHHHHH-----HHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhcCC
Q 038595          177 VAKDLS-----KKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGGD  226 (534)
Q Consensus       177 aAK~LD-----k~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~~  226 (534)
                      ....+-     ..+.-+|.+.+-+......... .++.+++|.+++.+.|.....
T Consensus       163 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~  216 (230)
T d2qwxa1         163 DSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIA-SEEERKGMVAAWSQRLQTIWK  216 (230)
T ss_dssp             CHHHHHHHHHCCCCCTTTCEECCCEEECCTTTS-CHHHHHHHHHHHHHHHHTGGG
T ss_pred             cHHHHHHHHHHHHHHhCCCeEcceEEEecCCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence            222222     2233457766654444333222 356788888888777765543

>d1d4aa_ c.23.5.3 (A:) NAD(P)H:quinone reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Quinone reductase
domain: NAD(P)H:quinone reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00036  Score=67.40  Aligned_cols=155  Identities=11%  Similarity=-0.015  Sum_probs=100.1

Q ss_pred             cEEEEEECc--cchHHHHHHHHHHHHhhCCCceEEECCCCCCcc-----------------------------------C
Q 038595           69 KGKLFFISQ--TGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPE-----------------------------------D  111 (534)
Q Consensus        69 kVlI~YgSq--TGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~-----------------------------------d  111 (534)
                      ||+|+|+|-  .+++..+|+.+.+.|++.|.+|+++||.+.+++                                   |
T Consensus         4 KiLiI~ahP~~~S~~~aL~~~~~~~l~~~G~eV~~~DLy~~~f~P~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~dD   83 (273)
T d1d4aa_           4 RALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSPD   83 (273)
T ss_dssp             EEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCBCHH
T ss_pred             eEEEEEcCCCCccHHHHHHHHHHHHHHHCCCEEEEEECcccCCCCcCCHHHHhhhhcccccccchhhhhhhhcccCCcHH
Confidence            699999994  477899999999999999999999999764321                                   0


Q ss_pred             -------cCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCccc----ccccCCCCCeEE-EEEecCcc--hH-HHHHH
Q 038595          112 -------LSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFR----VGSLLLSNCKFA-VFGVGSKS--YE-KTFNM  176 (534)
Q Consensus       112 -------L~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFR----v~~~~Lkgl~yA-VFGLGDs~--Y~-e~Fc~  176 (534)
                             |...+.+||++|.|..+ +|.-.+.|++..-....-|+    .....|+|++.. |+..|...  |. ..++.
T Consensus        84 i~~~~~~l~~AD~IV~~~P~yw~s-~PA~LK~~iDRV~~~G~af~~~~~~~~g~l~gKk~~~ivTtGg~~~~y~~~g~~~  162 (273)
T d1d4aa_          84 IVAEQKKLEAADLVIFQFPLQWFG-VPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHG  162 (273)
T ss_dssp             HHHHHHHHHHCSEEEEEEECBTTB-CCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSCTGGGSTTBTTC
T ss_pred             HHHHHHHHHhCCEEEEECChhhcC-CCHHHHHHHHHhccCCcccccCCCCCCCcccCCeEEEEEecCCChhhhccccccC
Confidence                   23467899999999955 66667777776532211122    234467887655 45666542  32 12222


Q ss_pred             HHHHHHH-----HHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhcC
Q 038595          177 VAKDLSK-----KMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGG  225 (534)
Q Consensus       177 aAK~LDk-----~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~  225 (534)
                      ..+.+-.     .|.-+|.+.+-|....+... ..++..++|.+++.+.|....
T Consensus       163 ~~~~~l~~~~~~i~~f~G~~~l~~~~~~~~~~-~~~~~r~~~le~~~~~l~~L~  215 (273)
T d1d4aa_         163 DMNVILWPIQSGILHFCGFQVLEPQLTYSIGH-TPADARIQILEGWKKRLENIW  215 (273)
T ss_dssp             CHHHHHHHHHTTTTGGGTCEECCCEEETTGGG-SCHHHHHHHHHHHHHHHTTGG
T ss_pred             CHHHHHHHHHHHHHHhcCCeecceEEEecCCC-CCHHHHHHHHHHHHHHHHhhc
Confidence            2222222     23446888776666554432 235678888888888876554

>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Biotin synthase
domain: Biotin synthase
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.0017  Score=61.80  Aligned_cols=115  Identities=10%  Similarity=0.167  Sum_probs=69.3

Q ss_pred             ccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCC
Q 038595          354 PSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPS  433 (534)
Q Consensus       354 p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (534)
                      .|..|+++|.||--...+...... ....++++|++.+.+..     .. |.                            
T Consensus        46 ~TngC~~~C~fC~~~~~~~~~~~~-~~~~~~e~i~~~~~~~~-----~~-G~----------------------------   90 (312)
T d1r30a_          46 KTGACPEDCKYCPQSSRYKTGLEA-ERLMEVEQVLESARKAK-----AA-GS----------------------------   90 (312)
T ss_dssp             ECSCBSSCCSSCSCBTTSCTTCCC-CCCCCHHHHHHHHHHHH-----HT-TC----------------------------
T ss_pred             eCCCCCCcCCcCCCCccCCCCCcc-ccccchHHHHHHHHHHH-----Hc-CC----------------------------
Confidence            377899999999654433322221 23457888988875432     21 21                            


Q ss_pred             CCCCcccccccHHHhhhccCCceEEEeecCCCCC---CccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCC--CceEEE
Q 038595          434 NDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIM---YPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKP--VTQLYV  508 (534)
Q Consensus       434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlL---yp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~--v~qlyv  508 (534)
                                           .++.+.....|.-   ...+.++++.+++..+.+.+.....-.+.++.|.+  ++.+.+
T Consensus        91 ---------------------~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~e~l~~lk~aG~~~i~~  149 (312)
T d1r30a_          91 ---------------------TRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNH  149 (312)
T ss_dssp             ---------------------SEEEEEECCSSCCTTTHHHHHHHHHHHHHTTSEEEEECSSCCHHHHHHHHHHCCCEEEC
T ss_pred             ---------------------EEEEEccCCCCCchhhHHHHHHHHHhcccccceeeeccccchHHHHHHhhcccceeEec
Confidence                                 2233333333322   12566677777776666655443334778888875  899999


Q ss_pred             EeeCCCHHHHHhhcCCC
Q 038595          509 SVDAATKDSLKAIDRPL  525 (534)
Q Consensus       509 SlDA~~~e~y~~I~rP~  525 (534)
                      .+++. .+.+.++..+.
T Consensus       150 ~iEs~-~~~~~~~~~~~  165 (312)
T d1r30a_         150 NLDTS-PEFYGNIITTR  165 (312)
T ss_dssp             CCBSC-HHHHHHHCCSS
T ss_pred             ccchh-hhhhccCCCCC
Confidence            99985 45677776653

>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Oxygen-independent coproporphyrinogen III oxidase HemN
domain: Oxygen-independent coproporphyrinogen III oxidase HemN
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.037  Score=55.97  Aligned_cols=69  Identities=17%  Similarity=0.258  Sum_probs=52.5

Q ss_pred             EEeec-CCCCCCc--cHHHHHHHHHhc-CC----cEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCC
Q 038595          458 ALSLV-GEPIMYP--EINTLVDELHRR-RI----STFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPL  525 (534)
Q Consensus       458 alSl~-GEPlLyp--~L~elI~~lk~~-gi----~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~  525 (534)
                      +|.+. |-|++.+  .|.++++.+++. .+    .+.+.+|-..  ++.++.|..  ++.+.+-|...|++..+.|+|..
T Consensus       104 ~i~~GGGTPt~L~~~~l~~ll~~l~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~G~nRiSlGvQs~~~~vl~~i~R~~  183 (441)
T d1olta_         104 QLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQ  183 (441)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCC
T ss_pred             eeEecCCCcCCCCHHHHHHHHHHHhhhccccchhcccccccccccchHHHHHHHHhCCceEEecchhcchhhhhhhhcCC
Confidence            44443 9999864  789999999875 33    2556666432  667776664  89999999999999999999986


Q ss_pred             C
Q 038595          526 F  526 (534)
Q Consensus       526 ~  526 (534)
                      .
T Consensus       184 ~  184 (441)
T d1olta_         184 D  184 (441)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.22  E-value=0.42  Score=40.58  Aligned_cols=58  Identities=9%  Similarity=0.064  Sum_probs=39.5

Q ss_pred             CCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcC----C--CceEEEEeeCCCHHHHHhhc
Q 038595          465 PIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLK----P--VTQLYVSVDAATKDSLKAID  522 (534)
Q Consensus       465 PlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~----~--v~qlyvSlDA~~~e~y~~I~  522 (534)
                      ..+||.+.++++.||++|+++.++||...+...+.++    .  .......-.-+.++.|..+.
T Consensus        45 ~~l~pgv~e~L~~L~~~G~~~~v~S~~~~~~~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~  108 (164)
T d1u7pa_          45 IQLYPEVPEVLGRLQSLGVPVAAASRTSEIQGANQLLELFDLGKYFIQREIYPGSKVTHFERLH  108 (164)
T ss_dssp             ECCCTTHHHHHHHHHHTTCCEEEEECCSCHHHHHHHHHHTTCGGGCSEEEESSSCHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHCCCcEEEEeccccchhhccchhcccccccceeeecccCCChHHHHHHH
Confidence            3579999999999999999999999988765433222    1  11222344456666666553

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Putative hydrolase SP0805
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=80.21  E-value=0.62  Score=39.70  Aligned_cols=31  Identities=19%  Similarity=0.475  Sum_probs=28.5

Q ss_pred             CCCCCCccHHHHHHHHHhcCCcEEEEcCCCC
Q 038595          463 GEPIMYPEINTLVDELHRRRISTFLVTNAQF  493 (534)
Q Consensus       463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGtl  493 (534)
                      .+|.+||.+.++++.++++|++++++||+.-
T Consensus        76 ~~~~~~~gv~~~l~~l~~~g~~~~i~Sn~~~  106 (187)
T d2fi1a1          76 EHPILFEGVSDLLEDISNQGGRHFLVSHRND  106 (187)
T ss_dssp             TSCCBCTTHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             hcCcccchhHHHHHHHHhhhccccccccCcc
Confidence            5678899999999999999999999999865