Citrus Sinensis ID: 038649

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
MLAWVKSLSGTSMLVEDFATFIEPLKLLFHDNHCSGWRHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGLSANRGFFGCRHFSRTNQILEQMGMTPIDWQL
ccccccccccHHHHHHHHHHccccccccccccEEEEccccccccccccHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHccccccccEEEEccccccccccccccccccHHHHHHHHHHcccccccccc
ccEEEEcccccccccccHHHHHHHcEEEEcHEEHEHHccEccccccccHHHHHHHHHHHHHHHccccEEEEEcHHHHHHcccccccccEEEEEcccccccHHHccccccHHHHHHHHHHHHccccccccc
MLAWVKSLSGTSMLVEDFATfieplkllfhdnhcsgwrhqaNSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHhilkaahpsglsanrgffgcrhfSRTNQILEqmgmtpidwql
mlawvkslsgtsmLVEDFATFIEPLKLLFHDNHCSGWRHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGLSANRGFFGCRHFSRTNQileqmgmtpidwql
MLAWVKSLSGTSMLVEDFATFIEPLKLLFHDNHCSGWRHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGLSANRGFFGCRHFSRTNQILEQMGMTPIDWQL
***WVKSLSGTSMLVEDFATFIEPLKLLFHDNHCSGWRHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGLSANRGFFGCRHFSRTNQILEQM*********
MLAWVKSLSGTSMLVEDFATFIEPLKLLFHDNHCSGWRHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGLSANRGFFGCRHFSRTNQILEQMGMTPIDWQL
MLAWVKSLSGTSMLVEDFATFIEPLKLLFHDNHCSGWRHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGLSANRGFFGCRHFSRTNQILEQMGMTPIDWQL
MLAWVKSLSGTSMLVEDFATFIEPLKLLFHDNHCSGWRHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGLSANRGFFGCRHFSRTNQILEQMGMTPI*W**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
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MLAWVKSLSGTSMLVEDFATFIEPLKLLFHDNHCSGWRHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGLSANRGFFGCRHFSRTNQILEQMGMTPIDWQL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query130 2.2.26 [Sep-21-2011]
A8GI39227 Uracil-DNA glycosylase OS yes no 0.684 0.392 0.640 8e-30
C6DC11228 Uracil-DNA glycosylase OS yes no 0.684 0.390 0.617 1e-29
B4F058226 Uracil-DNA glycosylase OS yes no 0.7 0.402 0.637 2e-29
Q2NS03227 Uracil-DNA glycosylase OS yes no 0.684 0.392 0.617 3e-29
Q182G9224 Uracil-DNA glycosylase OS yes no 0.707 0.410 0.554 1e-28
P13051313 Uracil-DNA glycosylase OS yes no 0.7 0.290 0.582 1e-28
Q6D208228 Uracil-DNA glycosylase OS yes no 0.684 0.390 0.595 2e-28
Q7N1U8226 Uracil-DNA glycosylase OS yes no 0.7 0.402 0.604 2e-28
B0KV50230 Uracil-DNA glycosylase OS yes no 0.715 0.404 0.634 2e-28
A5W8H2230 Uracil-DNA glycosylase OS yes no 0.715 0.404 0.623 2e-28
>sp|A8GI39|UNG_SERP5 Uracil-DNA glycosylase OS=Serratia proteamaculans (strain 568) GN=ung PE=3 SV=1 Back     alignment and function desciption
 Score =  128 bits (322), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 70/89 (78%)

Query: 40  QANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGL 99
           QA+SHAK GWE FTD VI A+++ +EGVVFLLWG  AQ+K   I+  +HH+LKA HPS L
Sbjct: 132 QAHSHAKLGWETFTDKVIAALNENREGVVFLLWGAHAQKKGNFIDSNRHHVLKAPHPSPL 191

Query: 100 SANRGFFGCRHFSRTNQILEQMGMTPIDW 128
           SA+RGF GCRHFS+ NQ+L Q G+ PIDW
Sbjct: 192 SAHRGFLGCRHFSQANQLLVQQGLQPIDW 220
Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
Serratia proteamaculans (strain 568) (taxid: 399741)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: 2EC: 7
>sp|C6DC11|UNG_PECCP Uracil-DNA glycosylase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ung PE=3 SV=1 Back     alignment and function description
>sp|B4F058|UNG_PROMH Uracil-DNA glycosylase OS=Proteus mirabilis (strain HI4320) GN=ung PE=3 SV=1 Back     alignment and function description
>sp|Q2NS03|UNG_SODGM Uracil-DNA glycosylase OS=Sodalis glossinidius (strain morsitans) GN=ung PE=3 SV=1 Back     alignment and function description
>sp|Q182G9|UNG_CLOD6 Uracil-DNA glycosylase OS=Clostridium difficile (strain 630) GN=ung PE=3 SV=1 Back     alignment and function description
>sp|P13051|UNG_HUMAN Uracil-DNA glycosylase OS=Homo sapiens GN=UNG PE=1 SV=2 Back     alignment and function description
>sp|Q6D208|UNG_ERWCT Uracil-DNA glycosylase OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=ung PE=3 SV=1 Back     alignment and function description
>sp|Q7N1U8|UNG_PHOLL Uracil-DNA glycosylase OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=ung PE=3 SV=1 Back     alignment and function description
>sp|B0KV50|UNG_PSEPG Uracil-DNA glycosylase OS=Pseudomonas putida (strain GB-1) GN=ung PE=3 SV=1 Back     alignment and function description
>sp|A5W8H2|UNG_PSEP1 Uracil-DNA glycosylase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ung PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query130
356544588 303 PREDICTED: uracil-DNA glycosylase-like [ 0.715 0.306 0.860 2e-42
359473659 328 PREDICTED: uracil-DNA glycosylase [Vitis 0.707 0.280 0.869 2e-41
297738247 321 unnamed protein product [Vitis vinifera] 0.707 0.286 0.869 2e-41
224112279216 predicted protein [Populus trichocarpa] 0.7 0.421 0.857 2e-40
226493972 303 LOC100284406 [Zea mays] gi|195641730|gb| 0.707 0.303 0.815 3e-39
297834770 329 uracil DNA glycosylase family protein [A 0.7 0.276 0.824 3e-39
32488054 303 OSJNBa0018M05.3 [Oryza sativa Japonica G 0.707 0.303 0.815 4e-39
194704478 303 unknown [Zea mays] gi|414584830|tpg|DAA3 0.707 0.303 0.815 4e-39
357166696 310 PREDICTED: uracil-DNA glycosylase-like [ 0.707 0.296 0.815 8e-39
15230152 330 uracil dna glycosylase [Arabidopsis thal 0.7 0.275 0.813 1e-38
>gi|356544588|ref|XP_003540731.1| PREDICTED: uracil-DNA glycosylase-like [Glycine max] Back     alignment and taxonomy information
 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 80/93 (86%), Positives = 86/93 (92%)

Query: 38  RHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPS 97
           +HQANSHAKKGWEQFTD VIK IS KKEGVVFLLWGNSA+EKSRLI+  KHH+L AAHPS
Sbjct: 211 KHQANSHAKKGWEQFTDVVIKTISQKKEGVVFLLWGNSAREKSRLIDARKHHVLTAAHPS 270

Query: 98  GLSANRGFFGCRHFSRTNQILEQMGMTPIDWQL 130
           GLSANRGFFGCRHFSRTNQ+LEQMG+ PIDWQL
Sbjct: 271 GLSANRGFFGCRHFSRTNQLLEQMGIDPIDWQL 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359473659|ref|XP_002271878.2| PREDICTED: uracil-DNA glycosylase [Vitis vinifera] Back     alignment and taxonomy information
>gi|297738247|emb|CBI27448.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224112279|ref|XP_002316140.1| predicted protein [Populus trichocarpa] gi|222865180|gb|EEF02311.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|226493972|ref|NP_001150773.1| LOC100284406 [Zea mays] gi|195641730|gb|ACG40333.1| uracil-DNA glycosylase [Zea mays] Back     alignment and taxonomy information
>gi|297834770|ref|XP_002885267.1| uracil DNA glycosylase family protein [Arabidopsis lyrata subsp. lyrata] gi|297331107|gb|EFH61526.1| uracil DNA glycosylase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|32488054|emb|CAE03228.1| OSJNBa0018M05.3 [Oryza sativa Japonica Group] gi|222629761|gb|EEE61893.1| hypothetical protein OsJ_16593 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|194704478|gb|ACF86323.1| unknown [Zea mays] gi|414584830|tpg|DAA35401.1| TPA: uracil-DNA glycosylase [Zea mays] Back     alignment and taxonomy information
>gi|357166696|ref|XP_003580805.1| PREDICTED: uracil-DNA glycosylase-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|15230152|ref|NP_188493.1| uracil dna glycosylase [Arabidopsis thaliana] gi|9294324|dbj|BAB02221.1| uracil-DNA glycosylase-like protein [Arabidopsis thaliana] gi|21537176|gb|AAM61517.1| uracil-DNA glycosylase, putative [Arabidopsis thaliana] gi|115646763|gb|ABJ17110.1| At3g18630 [Arabidopsis thaliana] gi|332642603|gb|AEE76124.1| uracil dna glycosylase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query130
TAIR|locus:2086904330 UNG "uracil dna glycosylase" [ 0.7 0.275 0.813 8.9e-38
UNIPROTKB|P13051313 UNG "Uracil-DNA glycosylase" [ 0.7 0.290 0.582 1.9e-28
ZFIN|ZDB-GENE-040426-900291 unga "uracil-DNA glycosylase a 0.7 0.312 0.582 2.4e-28
UNIPROTKB|E2R050297 UNG "Uncharacterized protein" 0.7 0.306 0.571 6.4e-28
UNIPROTKB|P12295229 ung "uracil-DNA glycosylase" [ 0.684 0.388 0.640 8.2e-28
UNIPROTKB|Q17QB8304 UNG "Uracil-DNA glycosylase" [ 0.7 0.299 0.571 8.2e-28
UNIPROTKB|F1RGB4312 UNG "Uncharacterized protein" 0.7 0.291 0.571 1e-27
UNIPROTKB|Q9KPK8226 ung "Uracil-DNA glycosylase" [ 0.684 0.393 0.573 4.5e-27
TIGR_CMR|VC_2359226 VC_2359 "uracil-DNA glycosylas 0.684 0.393 0.573 4.5e-27
MGI|MGI:109352306 Ung "uracil DNA glycosylase" [ 0.7 0.297 0.549 4.5e-27
TAIR|locus:2086904 UNG "uracil dna glycosylase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 74/91 (81%), Positives = 82/91 (90%)

Query:    40 QANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGL 99
             Q NSHAKKGWEQFTDAVI++IS +KEGVVFLLWG  AQEKS+LI+ TKHHIL AAHPSGL
Sbjct:   240 QPNSHAKKGWEQFTDAVIQSISQQKEGVVFLLWGRYAQEKSKLIDATKHHILTAAHPSGL 299

Query:   100 SANRGFFGCRHFSRTNQILEQMGMTPIDWQL 130
             SANRGFF CRHFSR NQ+LE+MG+ PIDWQL
Sbjct:   300 SANRGFFDCRHFSRANQLLEEMGIPPIDWQL 330
GO:0004844 "uracil DNA N-glycosylase activity" evidence=IEA;ISS;IDA
GO:0006281 "DNA repair" evidence=ISS
GO:0006284 "base-excision repair" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0005739 "mitochondrion" evidence=IDA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
UNIPROTKB|P13051 UNG "Uracil-DNA glycosylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-900 unga "uracil-DNA glycosylase a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2R050 UNG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P12295 ung "uracil-DNA glycosylase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q17QB8 UNG "Uracil-DNA glycosylase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RGB4 UNG "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPK8 ung "Uracil-DNA glycosylase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2359 VC_2359 "uracil-DNA glycosylase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
MGI|MGI:109352 Ung "uracil DNA glycosylase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.27LOW CONFIDENCE prediction!
3rd Layer3.2.2.28LOW CONFIDENCE prediction!
3rd Layer3.2.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query130
PRK05254224 PRK05254, PRK05254, uracil-DNA glycosylase; Provis 2e-58
COG0692223 COG0692, Ung, Uracil DNA glycosylase [DNA replicat 9e-55
cd10027201 cd10027, UDG_F1, Family 1 of Uracil-DNA glycosylas 2e-53
TIGR00628212 TIGR00628, ung, uracil-DNA glycosylase 3e-42
PHA03347252 PHA03347, PHA03347, uracil DNA glycosylase; Provis 1e-27
PHA03200255 PHA03200, PHA03200, uracil DNA glycosylase; Provis 1e-26
PHA03201318 PHA03201, PHA03201, uracil DNA glycosylase; Provis 3e-20
PHA03202313 PHA03202, PHA03202, uracil DNA glycosylase; Provis 2e-15
smart00986156 smart00986, UDG, Uracil DNA glycosylase superfamil 8e-15
PHA03204322 PHA03204, PHA03204, uracil DNA glycosylase; Provis 1e-14
PHA03199304 PHA03199, PHA03199, uracil DNA glycosylase; Provis 1e-12
smart00987135 smart00987, UreE_C, UreE urease accessory protein, 1e-09
pfam03167143 pfam03167, UDG, Uracil DNA glycosylase superfamily 8e-08
>gnl|CDD|235376 PRK05254, PRK05254, uracil-DNA glycosylase; Provisional Back     alignment and domain information 
 Score =  179 bits (458), Expect = 2e-58
 Identities = 59/93 (63%), Positives = 76/93 (81%)

Query: 38  RHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPS 97
             QANSHA KGWE FTDAVIKA+++++E VVF+LWG+ AQ+K  LI+ +KH IL++ HPS
Sbjct: 132 AGQANSHAGKGWETFTDAVIKALNERREPVVFILWGSHAQKKKALIDNSKHLILESPHPS 191

Query: 98  GLSANRGFFGCRHFSRTNQILEQMGMTPIDWQL 130
            LSA+RGFFG +HFS+ N +L+Q G TPIDWQL
Sbjct: 192 PLSAHRGFFGSKHFSKANALLKQHGKTPIDWQL 224

Length = 224
>gnl|CDD|223764 COG0692, Ung, Uracil DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|198425 cd10027, UDG_F1, Family 1 of Uracil-DNA glycosylase (UDG) enzymes Back     alignment and domain information
>gnl|CDD|233060 TIGR00628, ung, uracil-DNA glycosylase Back     alignment and domain information
>gnl|CDD|177588 PHA03347, PHA03347, uracil DNA glycosylase; Provisional Back     alignment and domain information
>gnl|CDD|165467 PHA03200, PHA03200, uracil DNA glycosylase; Provisional Back     alignment and domain information
>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional Back     alignment and domain information
>gnl|CDD|165469 PHA03202, PHA03202, uracil DNA glycosylase; Provisional Back     alignment and domain information
>gnl|CDD|214956 smart00986, UDG, Uracil DNA glycosylase superfamily Back     alignment and domain information
>gnl|CDD|165471 PHA03204, PHA03204, uracil DNA glycosylase; Provisional Back     alignment and domain information
>gnl|CDD|165466 PHA03199, PHA03199, uracil DNA glycosylase; Provisional Back     alignment and domain information
>gnl|CDD|214957 smart00987, UreE_C, UreE urease accessory protein, C-terminal domain Back     alignment and domain information
>gnl|CDD|217399 pfam03167, UDG, Uracil DNA glycosylase superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 130
COG0692223 Ung Uracil DNA glycosylase [DNA replication, recom 100.0
PHA03200255 uracil DNA glycosylase; Provisional 100.0
KOG2994297 consensus Uracil DNA glycosylase [Replication, rec 100.0
PHA03347252 uracil DNA glycosylase; Provisional 100.0
PHA03204322 uracil DNA glycosylase; Provisional 100.0
PRK05254224 uracil-DNA glycosylase; Provisional 100.0
PHA03202313 uracil DNA glycosylase; Provisional 100.0
PHA03199304 uracil DNA glycosylase; Provisional 100.0
PHA03201318 uracil DNA glycosylase; Provisional 100.0
TIGR00628212 ung uracil-DNA glycosylase. This family is based o 100.0
PF03167152 UDG: Uracil DNA glycosylase superfamily; InterPro: 98.38
>COG0692 Ung Uracil DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=9.1e-51  Score=322.64  Aligned_cols=118  Identities=54%  Similarity=0.885  Sum_probs=113.8

Q ss_pred             hhhhccCcccCCCc---------eeeeeecccc-ccCCCCCcCCCChHHHHHHHHHHHhhcCCCeEEEeecHHHHhcccc
Q 038649           13 MLVEDFATFIEPLK---------LLFHDNHCSG-WRHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRL   82 (130)
Q Consensus        13 ~l~~~~~~~~~p~~---------~vLllN~~lt-~~~~~~SH~~~GWe~fT~~vI~~l~~~~~~vVFlLWG~~A~~~~~~   82 (130)
                      +|.+|+..+..|.+         +|||||++|| ++++|+||++.|||.||++||+.|+++++++||||||++||++.++
T Consensus        95 EL~~dl~~~~~~~~g~L~~WA~QGVLLLNtvLTV~~g~a~SH~~~GWE~FTd~vi~~l~~~~~~vVfiLWG~~Aq~k~~~  174 (223)
T COG0692          95 ELEADLGGFPIPNHGDLTSWAEQGVLLLNTVLTVRAGQANSHAGKGWETFTDAVIKALNERREPVVFVLWGSHAQKKKKL  174 (223)
T ss_pred             HHHhhhCCCCCCCCCccHHHHHhchhheeeeeEecCCCcccccccChHHHHHHHHHHHHhcCCceEEEEeCHHHHHHHhc
Confidence            56789998888888         4999999999 9999999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEcCCCCccCCCCCCCCCCchHHHHHHHHHcCCCCccccC
Q 038649           83 INVTKHHILKAAHPSGLSANRGFFGCRHFSRTNQILEQMGMTPIDWQL  130 (130)
Q Consensus        83 I~~~~h~VL~s~HPSPlSa~rgF~g~~hF~k~N~~L~~~g~~pIdW~l  130 (130)
                      |+.++|+||+|+|||||||+||||||+||++||+||+++|++||||++
T Consensus       175 I~~~~h~il~s~HPSPLSa~rGFfG~~hFsk~N~~L~~~g~~pIdW~~  222 (223)
T COG0692         175 IDNKKHLILEAPHPSPLSAHRGFFGCKHFSKANEWLEKHGKKPIDWSL  222 (223)
T ss_pred             cCCCCeEEEeCCCCCccccccCccCCCchHHHHHHHHHcCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999975

>PHA03200 uracil DNA glycosylase; Provisional Back     alignment and domain information
>KOG2994 consensus Uracil DNA glycosylase [Replication, recombination and repair] Back     alignment and domain information
>PHA03347 uracil DNA glycosylase; Provisional Back     alignment and domain information
>PHA03204 uracil DNA glycosylase; Provisional Back     alignment and domain information
>PRK05254 uracil-DNA glycosylase; Provisional Back     alignment and domain information
>PHA03202 uracil DNA glycosylase; Provisional Back     alignment and domain information
>PHA03199 uracil DNA glycosylase; Provisional Back     alignment and domain information
>PHA03201 uracil DNA glycosylase; Provisional Back     alignment and domain information
>TIGR00628 ung uracil-DNA glycosylase Back     alignment and domain information
>PF03167 UDG: Uracil DNA glycosylase superfamily; InterPro: IPR005122 This entry represents various uracil-DNA glycosylases and related DNA glycosylases (3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query130
1ugh_E223 Crystal Structure Of Human Uracil-Dna Glycosylase I 1e-29
1yuo_A223 Optimisation Of The Surface Electrostatics As A Str 2e-29
3tkb_A223 Crystal Structure Of Human Uracil-Dna Glycosylase D 2e-29
3uf7_A237 Co-Crystal Structure Of Escherichia Coli Uracil-Dna 6e-29
1eui_A228 Escherichia Coli Uracil-Dna Glycosylase Complex Wit 6e-29
1uug_A229 Escherichia Coli Uracil-Dna Glycosylase:inhibitor C 6e-29
2ssp_E223 Leucine-272-Alanine Uracil-Dna Glycosylase Bound To 7e-29
1eug_A229 Crystal Structure Of Escherichia Coli Uracil Dna Gl 7e-29
2eug_A229 Crystal Structure Of Escherichia Coli Uracil Dna Gl 8e-29
4skn_E223 A Nucleotide-flipping Mechanism From The Structure 8e-29
1flz_A228 Uracil Dna Glycosylase With Uaap Length = 228 8e-29
2jhq_A226 Crystal Structure Of Uracil Dna-Glycosylase From Vi 2e-28
4eug_A229 Crystallographic And Enzymatic Studies Of An Active 5e-28
2uug_A229 Escherichia Coli Uracil-Dna Glycosylase:inhibitor C 6e-28
1okb_A223 Crystal Structure Of Uracil-Dna Glycosylase From At 9e-28
3tr7_A232 Structure Of A Uracil-Dna Glycosylase (Ung) From Co 3e-27
2boo_A247 The Crystal Structure Of Uracil-Dna N-Glycosylase ( 2e-24
3ufm_A255 Co-Crystal Structure Of Deinococcus Radiodurans Ura 2e-24
3cxm_A268 Leishmania Naiffi Uracil-Dna Glycosylase In Complex 6e-23
2j8x_A231 Epstein-Barr Virus Uracil-Dna Glycosylase In Comple 1e-15
1udi_E244 Nucleotide Mimicry In The Crystal Structure Of The 2e-14
2zhx_A238 Crystal Structure Of Uracil-Dna Glycosylase From My 3e-14
2c53_A244 A Comparative Study Of Uracil Dna Glycosylases From 1e-13
>pdb|1UGH|E Chain E, Crystal Structure Of Human Uracil-Dna Glycosylase In Complex With A Protein Inhibitor: Protein Mimicry Of Dna Length = 223 Back     alignment and structure 
Iteration: 1

 Score =  124 bits (311), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 71/91 (78%)
Query: 39  HQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSG 98
           HQANSH ++GWEQFTDAV+  ++    G+VFLLWG+ AQ+K   I+  +HH+L+ AHPS 
Sbjct: 131 HQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSP 190
Query: 99  LSANRGFFGCRHFSRTNQILEQMGMTPIDWQ 129
           LS  RGFFGCRHFS+TN++L++ G  PIDW+
Sbjct: 191 LSVYRGFFGCRHFSKTNELLQKSGKKPIDWK 221
>pdb|1YUO|A Chain A, Optimisation Of The Surface Electrostatics As A Strategy For Cold Adaptation Of Uracil-Dna N-Glycosylase (Ung)from Atlantic Cod (Gadus Morhua) Length = 223 Back     alignment and structure
>pdb|3TKB|A Chain A, Crystal Structure Of Human Uracil-Dna Glycosylase D183gK302R MUTANT Length = 223 Back     alignment and structure
>pdb|3UF7|A Chain A, Co-Crystal Structure Of Escherichia Coli Uracil-Dna Glycosylase And A C-Terminal Fragement Of The Single-Stranded Dna-Binding Protein Length = 237 Back     alignment and structure
>pdb|1EUI|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With Uracil- Dna Glycosylase Inhibitor Protein Length = 228 Back     alignment and structure
>pdb|1UUG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex With Wild-Type Udg And Wild-Type Ugi Length = 229 Back     alignment and structure
>pdb|2SSP|E Chain E, Leucine-272-Alanine Uracil-Dna Glycosylase Bound To Abasic Site-Containing Dna Length = 223 Back     alignment and structure
>pdb|1EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna Glycosylase And Its Complexes With Uracil And Glycerol: Structure And Glycosylase Mechanism Revisited Length = 229 Back     alignment and structure
>pdb|2EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna Glycosylase And Its Complexes With Uracil And Glycerol: Structure And Glycosylase Mechanism Revisited Length = 229 Back     alignment and structure
>pdb|4SKN|E Chain E, A Nucleotide-flipping Mechanism From The Structure Of Human Uracil-dna Glycosylase Bound To Dna Length = 223 Back     alignment and structure
>pdb|1FLZ|A Chain A, Uracil Dna Glycosylase With Uaap Length = 228 Back     alignment and structure
>pdb|2JHQ|A Chain A, Crystal Structure Of Uracil Dna-Glycosylase From Vibrio Cholerae Length = 226 Back     alignment and structure
>pdb|4EUG|A Chain A, Crystallographic And Enzymatic Studies Of An Active Site Variant H187q Of Escherichia Coli Uracil Dna Glycosylase: Crystal Structures Of Mutant H187q And Its Uracil Complex Length = 229 Back     alignment and structure
>pdb|2UUG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex With H187d Mutant Udg And Wild-Type Ugi Length = 229 Back     alignment and structure
>pdb|1OKB|A Chain A, Crystal Structure Of Uracil-Dna Glycosylase From Atlantic Cod (Gadus Morhua) Length = 223 Back     alignment and structure
>pdb|3TR7|A Chain A, Structure Of A Uracil-Dna Glycosylase (Ung) From Coxiella Burnetii Length = 232 Back     alignment and structure
>pdb|2BOO|A Chain A, The Crystal Structure Of Uracil-Dna N-Glycosylase (Ung) From Deinococcus Radiodurans Length = 247 Back     alignment and structure
>pdb|3UFM|A Chain A, Co-Crystal Structure Of Deinococcus Radiodurans Uracil-Dna Glycosylase And The C-Terminus Of The Single-Stranded Dna-Binding Protein Length = 255 Back     alignment and structure
>pdb|3CXM|A Chain A, Leishmania Naiffi Uracil-Dna Glycosylase In Complex With 5-Bromouracil Length = 268 Back     alignment and structure
>pdb|2J8X|A Chain A, Epstein-Barr Virus Uracil-Dna Glycosylase In Complex With Ugi From Pbs-2 Length = 231 Back     alignment and structure
>pdb|1UDI|E Chain E, Nucleotide Mimicry In The Crystal Structure Of The Uracil- Dna Glycosylase-Uracil Glycosylase Inhibitor Protein Complex Length = 244 Back     alignment and structure
>pdb|2ZHX|A Chain A, Crystal Structure Of Uracil-Dna Glycosylase From Mycobacterium Tuberculosis In Complex With A Proteinaceous Inhibitor Length = 238 Back     alignment and structure
>pdb|2C53|A Chain A, A Comparative Study Of Uracil Dna Glycosylases From Human And Herpes Simplex Virus Type 1 Length = 244 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query130
3tr7_A232 UDG, uracil-DNA glycosylase; DNA metabolism, hydro 3e-62
4eug_A229 UDG, UNG, protein (glycosylase); hydrolase; 1.40A 9e-62
3fci_A223 UDG, uracil-DNA glycosylase; DNA repair, alternati 2e-61
3a7n_A238 UDG, uracil-DNA glycosylase; UNG-UGI interactions, 7e-61
2boo_A247 UDG, uracil-DNA glycosylase; base excision repair, 1e-59
2j8x_A231 Uracil-DNA glycosylase; hydrolase-inhibitor comple 1e-58
3cxm_A268 Uracil-DNA glycosylase; base excision repair, BER, 2e-57
1udg_A244 Uracil-DNA glycosylase; hydrolase; 1.75A {Herpes s 1e-56
2owr_A218 UDG, uracil-DNA glycosylase; uracil-DNA glycosylas 7e-47
>3tr7_A UDG, uracil-DNA glycosylase; DNA metabolism, hydrolase; 2.20A {Coxiella burnetii} Length = 232 Back     alignment and structure
 Score =  189 bits (482), Expect = 3e-62
 Identities = 54/93 (58%), Positives = 68/93 (73%)

Query: 38  RHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPS 97
             +  SHA  GW +FTD VI++++D  EG+VFLLWG+ AQ+KS+LI   +H ILKA HPS
Sbjct: 135 AGKPQSHANIGWHRFTDKVIESLNDHPEGIVFLLWGSYAQKKSQLITNLRHRILKAPHPS 194

Query: 98  GLSANRGFFGCRHFSRTNQILEQMGMTPIDWQL 130
            LSA RGF GCRHFS+ NQ+L +MG   IDW L
Sbjct: 195 PLSAARGFLGCRHFSKANQLLHEMGRGEIDWAL 227
>4eug_A UDG, UNG, protein (glycosylase); hydrolase; 1.40A {Escherichia coli} SCOP: c.18.1.1 PDB: 5eug_A 1eug_A 2uug_A 3eug_A 2eug_A 1uug_A 1lqj_A 1lqm_A 1lqg_A 1flz_A 1eui_A 2jhq_A Length = 229 Back     alignment and structure
>3fci_A UDG, uracil-DNA glycosylase; DNA repair, alternative splicing, disease mutation, DNA damage, glycosidase, HOST- virus interaction, hydrolase; HET: 3FI; 1.27A {Homo sapiens} PDB: 1emh_A* 1emj_A* 1q3f_A* 1ssp_E* 1ugh_E 1akz_A* 2oxm_A* 2oyt_A* 3fcf_A* 2hxm_A* 3fck_B* 3fcl_A* 2ssp_E* 1yuo_A 3tkb_A 4skn_E* 1okb_A Length = 223 Back     alignment and structure
>3a7n_A UDG, uracil-DNA glycosylase; UNG-UGI interactions, UNG-DNA complex, citrate AS protein LI ligand binding, inhibitor design; HET: FLC; 1.95A {Mycobacterium tuberculosis H37RV} PDB: 2zhx_A* Length = 238 Back     alignment and structure
>2boo_A UDG, uracil-DNA glycosylase; base excision repair, radiation resistance, DNA damage, DNA glycosidase, hydrolase; 1.80A {Deinococcus radiodurans} Length = 247 Back     alignment and structure
>2j8x_A Uracil-DNA glycosylase; hydrolase-inhibitor complex, hydrolase/inhibitor complex, EB repair, lytic protein, epstein-BARR virus; 2.3A {Epstein-barr virus} SCOP: c.18.1.1 Length = 231 Back     alignment and structure
>3cxm_A Uracil-DNA glycosylase; base excision repair, BER, DNA damage repair, MS SGPP, hydrolase, 5-bromouracil; 1.50A {Leishmania naiffi} Length = 268 Back     alignment and structure
>1udg_A Uracil-DNA glycosylase; hydrolase; 1.75A {Herpes simplex virus} SCOP: c.18.1.1 PDB: 1lau_E 1udh_A 1udi_E 2c53_A* 2c56_A* Length = 244 Back     alignment and structure
>2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus} PDB: 2owq_A 3nt7_C Length = 218 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query130
3fci_A223 UDG, uracil-DNA glycosylase; DNA repair, alternati 100.0
3tr7_A232 UDG, uracil-DNA glycosylase; DNA metabolism, hydro 100.0
2j8x_A231 Uracil-DNA glycosylase; hydrolase-inhibitor comple 100.0
3a7n_A238 UDG, uracil-DNA glycosylase; UNG-UGI interactions, 100.0
2boo_A247 UDG, uracil-DNA glycosylase; base excision repair, 100.0
3cxm_A268 Uracil-DNA glycosylase; base excision repair, BER, 100.0
3uf7_A237 UDG, uracil-DNA glycosylase; glycosylase, SSB C-te 100.0
1udg_A244 Uracil-DNA glycosylase; hydrolase; 1.75A {Herpes s 100.0
2owr_A218 UDG, uracil-DNA glycosylase; uracil-DNA glycosylas 100.0
1oe4_A247 SMUG1, single-strand selective monofunctional urac 82.5
>3fci_A UDG, uracil-DNA glycosylase; DNA repair, alternative splicing, disease mutation, DNA damage, glycosidase, HOST- virus interaction, hydrolase; HET: 3FI; 1.27A {Homo sapiens} PDB: 1emh_A* 1emj_A* 1q3f_A* 1ssp_E* 1ugh_E 1akz_A* 2oxm_A* 2oyt_A* 3fcf_A* 2hxm_A* 3fck_B* 3fcl_A* 2ssp_E* 1yuo_A 3tkb_A 4skn_E* 1okb_A Back     alignment and structure
Probab=100.00  E-value=2.9e-51  Score=326.06  Aligned_cols=118  Identities=49%  Similarity=0.885  Sum_probs=114.4

Q ss_pred             hhhhccCcccCCCc---------eeeeeecccc-ccCCCCCcCCCChHHHHHHHHHHHhhcCCCeEEEeecHHHHhcccc
Q 038649           13 MLVEDFATFIEPLK---------LLFHDNHCSG-WRHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRL   82 (130)
Q Consensus        13 ~l~~~~~~~~~p~~---------~vLllN~~lt-~~~~~~SH~~~GWe~fT~~vI~~l~~~~~~vVFlLWG~~A~~~~~~   82 (130)
                      +|.+|+|+|..|.|         +|||||++|| ++|+|+||++.|||.||++||+.|+++++++||||||++||++.++
T Consensus        95 EL~~dl~g~~~p~~G~L~~WA~QGVLLLNt~LTV~~g~a~SH~~~GWe~fTd~vI~~l~~~~~~vVFiLWG~~Aq~k~~~  174 (223)
T 3fci_A           95 ELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSA  174 (223)
T ss_dssp             HHHHHSTTCCCCSSCCTHHHHTTTEEEEESSCCEETTCTTTTTTSSHHHHHHHHHHHHHHHCCSCEEEEESHHHHHHTTT
T ss_pred             HHHHhccCCCCCCCccchhHHhCCEEEEeeEEEEeCCCCCccccCChHHHHHHHHHHHHhcCCCeEEEEECHHHHhchhc
Confidence            68899999999988         4999999999 9999999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEcCCCCccCCCCCCCCCCchHHHHHHHHHcCCCCccccC
Q 038649           83 INVTKHHILKAAHPSGLSANRGFFGCRHFSRTNQILEQMGMTPIDWQL  130 (130)
Q Consensus        83 I~~~~h~VL~s~HPSPlSa~rgF~g~~hF~k~N~~L~~~g~~pIdW~l  130 (130)
                      ||.++|+||+|+|||||||+||||||+||++||+||+++|++||||++
T Consensus       175 i~~~~h~vl~s~HPSPLSa~rgFfg~~~Fs~~N~~L~~~g~~pIdW~~  222 (223)
T 3fci_A          175 IDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKE  222 (223)
T ss_dssp             CCTTTSEEEEECCSSTTTGGGTTTTCCHHHHHHHHHHHTTCCCCCTTC
T ss_pred             cCCCCeeEEEeCCCChhhcccCCCCCChHHHHHHHHHHcCCCCCCCcc
Confidence            999999999999999999999999999999999999999999999974
>3tr7_A UDG, uracil-DNA glycosylase; DNA metabolism, hydrolase; 2.20A {Coxiella burnetii} Back     alignment and structure
>2j8x_A Uracil-DNA glycosylase; hydrolase-inhibitor complex, hydrolase/inhibitor complex, EB repair, lytic protein, epstein-BARR virus; 2.3A {Epstein-barr virus} SCOP: c.18.1.1 Back     alignment and structure
>3a7n_A UDG, uracil-DNA glycosylase; UNG-UGI interactions, UNG-DNA complex, citrate AS protein LI ligand binding, inhibitor design; HET: FLC; 1.95A {Mycobacterium tuberculosis H37RV} PDB: 2zhx_A* Back     alignment and structure
>2boo_A UDG, uracil-DNA glycosylase; base excision repair, radiation resistance, DNA damage, DNA glycosidase, hydrolase; 1.80A {Deinococcus radiodurans} Back     alignment and structure
>3cxm_A Uracil-DNA glycosylase; base excision repair, BER, DNA damage repair, MS SGPP, hydrolase, 5-bromouracil; 1.50A {Leishmania naiffi} Back     alignment and structure
>3uf7_A UDG, uracil-DNA glycosylase; glycosylase, SSB C-terminal, base excision repair, hydrolase; HET: SO4; 1.20A {Escherichia coli} PDB: 1uug_A 1lqj_A 1lqm_A 1lqg_A 2uug_A 1eui_A 1eug_A 4eug_A 5eug_A 3eug_A 2eug_A 1flz_A 2jhq_A Back     alignment and structure
>1udg_A Uracil-DNA glycosylase; hydrolase; 1.75A {Herpes simplex virus} SCOP: c.18.1.1 PDB: 1lau_E 1udh_A 1udi_E 2c53_A* 2c56_A* Back     alignment and structure
>2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus} PDB: 2owq_A 3nt7_C Back     alignment and structure
>1oe4_A SMUG1, single-strand selective monofunctional uracil DNA glycosylase; hydrolase, hydrolase/complex, SMUG1; HET: 3DR; 2.0A {Xenopus laevis} SCOP: c.18.1.3 PDB: 1oe5_A* 1oe6_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 130
d2hxma1223 c.18.1.1 (A:82-304) Uracil-DNA glycosylase {Human 3e-36
d3euga_225 c.18.1.1 (A:) Uracil-DNA glycosylase {Escherichia 4e-36
d1laue_228 c.18.1.1 (E:) Uracil-DNA glycosylase {Herpes simpl 6e-33
d2j8xa1230 c.18.1.1 (A:26-255) Uracil-DNA glycosylase {Epstei 7e-33
>d2hxma1 c.18.1.1 (A:82-304) Uracil-DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]} Length = 223 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Uracil-DNA glycosylase-like
superfamily: Uracil-DNA glycosylase-like
family: Uracil-DNA glycosylase
domain: Uracil-DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 3e-36
 Identities = 54/103 (52%), Positives = 75/103 (72%)

Query: 27  LLFHDNHCSGWRHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVT 86
           +L  +   +   HQANSH ++GWEQFTDAV+  ++    G+VFLLWG+ AQ+K   I+  
Sbjct: 119 VLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRK 178

Query: 87  KHHILKAAHPSGLSANRGFFGCRHFSRTNQILEQMGMTPIDWQ 129
           +HH+L+ AHPS LS  RGFFGCRHFS+TN++L++ G  PIDW+
Sbjct: 179 RHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWK 221
>d3euga_ c.18.1.1 (A:) Uracil-DNA glycosylase {Escherichia coli [TaxId: 562]} Length = 225 Back     information, alignment and structure
>d1laue_ c.18.1.1 (E:) Uracil-DNA glycosylase {Herpes simplex virus type 1 [TaxId: 10298]} Length = 228 Back     information, alignment and structure
>d2j8xa1 c.18.1.1 (A:26-255) Uracil-DNA glycosylase {Epstein-Barr virus [TaxId: 10376]} Length = 230 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query130
d2hxma1223 Uracil-DNA glycosylase {Human (Homo sapiens) [TaxI 100.0
d3euga_225 Uracil-DNA glycosylase {Escherichia coli [TaxId: 5 100.0
d2j8xa1230 Uracil-DNA glycosylase {Epstein-Barr virus [TaxId: 100.0
d1laue_228 Uracil-DNA glycosylase {Herpes simplex virus type 100.0
d1oe4a_245 Single-strand selective monofunctional uracil-DNA 91.48
>d2hxma1 c.18.1.1 (A:82-304) Uracil-DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Uracil-DNA glycosylase-like
superfamily: Uracil-DNA glycosylase-like
family: Uracil-DNA glycosylase
domain: Uracil-DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-47  Score=300.05  Aligned_cols=118  Identities=49%  Similarity=0.894  Sum_probs=114.0

Q ss_pred             hhhhhccCcccCCCc---------eeeeeecccc-ccCCCCCcCCCChHHHHHHHHHHHhhcCCCeEEEeecHHHHhccc
Q 038649           12 SMLVEDFATFIEPLK---------LLFHDNHCSG-WRHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSR   81 (130)
Q Consensus        12 ~~l~~~~~~~~~p~~---------~vLllN~~lt-~~~~~~SH~~~GWe~fT~~vI~~l~~~~~~vVFlLWG~~A~~~~~   81 (130)
                      .+|.+|++.+..|.+         +|||||++|| ++++|+||++.|||+||++||+.|+++++++||||||++||++++
T Consensus        94 kel~~d~~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLWG~~A~~~~~  173 (223)
T d2hxma1          94 KELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGS  173 (223)
T ss_dssp             HHHHHHCTTCCCCSSCCTHHHHHTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCCSCEEEEESHHHHHHTT
T ss_pred             HHHHHhhccCCCCCccchhhhhcCCeEEEecceEEEcccccCchhhHHHHHHHHHHHHHhcccCCeEEEEeeehHHHHHH
Confidence            378999999998887         4999999999 899999999999999999999999999999999999999999999


Q ss_pred             ccCCCcceEEEcCCCCccCCCCCCCCCCchHHHHHHHHHcCCCCcccc
Q 038649           82 LINVTKHHILKAAHPSGLSANRGFFGCRHFSRTNQILEQMGMTPIDWQ  129 (130)
Q Consensus        82 ~I~~~~h~VL~s~HPSPlSa~rgF~g~~hF~k~N~~L~~~g~~pIdW~  129 (130)
                      .|+.++|.||+++||||||++|||+||+||++||+||+++|++||||+
T Consensus       174 ~i~~~~h~il~~~HPSPls~~~gF~~s~~F~k~N~~L~~~~~~~IdW~  221 (223)
T d2hxma1         174 AIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWK  221 (223)
T ss_dssp             TSCTTTSEEEEECCCSTTTGGGTTTTCCHHHHHHHHHHHTTCCCCCTT
T ss_pred             hhccCCCEEEEeCCCCccccCCCCCCCCHHHHHHHHHHHcCCCCcCCe
Confidence            999999999999999999999999999999999999999999999996
>d3euga_ c.18.1.1 (A:) Uracil-DNA glycosylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j8xa1 c.18.1.1 (A:26-255) Uracil-DNA glycosylase {Epstein-Barr virus [TaxId: 10376]} Back     information, alignment and structure
>d1laue_ c.18.1.1 (E:) Uracil-DNA glycosylase {Herpes simplex virus type 1 [TaxId: 10298]} Back     information, alignment and structure
>d1oe4a_ c.18.1.3 (A:) Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure