Citrus Sinensis ID: 038653

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------

MASKLRFIREEMSKAGLLPSTQSAGSVDIDFASLEAGEFFSSALSRAAAQQKELESHHLGEGFIDSPLSVEQWPYYKRKDNGFERILFHATRGNVFLKQSVVEDPVADPVSGEKVSGRISELRTTIDVGLVHRSNLLQTIADQFEQWNLLMEKVIYRTLNMLSMDVTKKCLVAESWCPVSAANQIENTLQRATINSNSQIGAIFQVLQIKGSLPTYFPDKQFCFCFSRNCGCIWKLGDIVEMTFGGRYVIMMMALFSIYTGLIYNEFFSAPSELFGPSAYACCDPSCRYIISVIDSRIYGHTCDSTTVGLIKVQPTYPFNVDPRWQMIFLNSLFGYLSILIIVKLCTGSQADLYHVMIYMFLSPTGDLGENQLFVGQKFLQILLLLSALVAVSWMPFPKPFLLKKQYQELKFQNKFYKGDGYKFPPFSFALLGEDDE

cccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEcccHHHHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEcccHHHHHHHHHHHHccccccccccEEEcccccccccccccccccccHHHHccccccccccEEEcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccc

cHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccEEEEEEEccHHHHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccHccHHHHHHHHHHHHHHcccccccHHEEccccccccccccccccEEEEEEEcccccccHHHHHHHHHcHHEHEHHHHHHHHHHHHEcHHccccEEEcccccEccccccccccccHHcccccccccccccccEEEccccccccccHHHHHHHHHHHHHHHEEEEEEHHHHcccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccccccccccccccc

MASKLRFIREEMskagllpstqsagsvdidfasleagEFFSSALSRAAAQQKELeshhlgegfidsplsveqwpyykrkdngfERILFHATRGNVFlkqsvvedpvadpvsgekvsGRISELRTTIDVGLVHRSNLLQTIADQFEQWNLLMEKVIYRTLNMLSMDVTKKClvaeswcpvsaaNQIENTLQRATINSNSQIGAIFQVLQikgslptyfpdkqfcfcfsrncgciwklgdiveMTFGGRYVIMMMALFSIYTGLiyneffsapselfgpsayaccdpscryIISVIdsriyghtcdsttvglikvqptypfnvdprwQMIFLNSLFGYLSILIIVKLCTGSQADLYHVMIYMFlsptgdlgenqlfVGQKFLQILLLLSALVAvswmpfpkpfllKKQYQELKFQNkfykgdgykfppfsfallgedde

MASKLRFIREEmskagllpstqsaGSVDIDFASLEAGEFFSSALSRAAAQQKELESHHlgegfidsplsveQWPYYKRKDNGFERILFHATRGNVFLkqsvvedpvadpvsgekvsgriseLRTTIDVGLVHRSNLLQTIADQFEQWNLLMEKVIYRTLNMLSMDVTKKCLVAESWCPVSAANQIENTLQRATINSNSQIGAIFQVLQIKGSLPTYFPDKQFCFCFSRNCGCIWKLGDIVEMTFGGRYVIMMMALFSIYTGLIYNEFFSAPSELFGPSAYACCDPSCRYIISVIDSRIYGHTCDSTTVGLIKVQPTYPFNVDPRWQMIFLNSLFGYLSILIIVKLCTGSQADLYHVMIYMFLSPTGDLGENQLFVGQKFLQILLLLSALVAVSWMPFPKPFLLKKQYQELKFQNKFYKGDGYKFPPFSFALLGEDDE

MASKLRFIREEMSKAGLLPSTQSAGSVDIDFASLEAGEFFSSALSRAAAQQKELESHHLGEGFIDSPLSVEQWPYYKRKDNGFERILFHATRGNVFLKQSVVEDPVADPVSGEKVSGRISELRTTIDVGLVHRSNLLQTIADQFEQWNLLMEKVIYRTLNMLSMDVTKKCLVAESWCPVSAANQIENTLQRATINSNSQIGAIFQVLQIKGSLPTYFPDKQFCFCFSRNCGCIWKLGDIVEMTFGGRYVIMMMALFSIYTGLIYNEFFSAPSELFGPSAYACCDPSCRYIISVIDSRIYGHTCDSTTVGLIKVQPTYPFNVDPRWQMIFLNSLFGYLSILIIVKLCTGSQADLYHVMIYMFLSPTGDLGENQLFVGQKFLQIllllsalvavsWMPFPKPFLLKKQYQELKFQNKFYKGDGYKFPPFSFALLGEDDE

******************************F***************************LGEGFIDSPLSVEQWPYYKRKDNGFERILFHATRGNVFLKQSVVEDPVAD******VSGRISELRTTIDVGLVHRSNLLQTIADQFEQWNLLMEKVIYRTLNMLSMDVTKKCLVAESWCPVSAANQIENTLQRATINSNSQIGAIFQVLQIKGSLPTYFPDKQFCFCFSRNCGCIWKLGDIVEMTFGGRYVIMMMALFSIYTGLIYNEFFSAPSELFGPSAYACCDPSCRYIISVIDSRIYGHTCDSTTVGLIKVQPTYPFNVDPRWQMIFLNSLFGYLSILIIVKLCTGSQADLYHVMIYMFLSPTGDLGENQLFVGQKFLQILLLLSALVAVSWMPFPKPFLLKKQYQELKFQNKFYKGDGYKFPPFSFALL*****

MASKLRFIREEMS******************************************************LSVEQWPYYKRKDNGFERILFHATRGNVFLKQSVVEDPVADPVSGEKVSGRISELRTTIDVGLVHRSNLLQTIADQFEQWNLLMEKVIYRTLNMLSMDVTKKCLVAESWCPVSAANQIENTLQRATINSNSQIGAIFQVLQIKGSLPTYFPDKQFCFCFSRNCGCIWKLGDIVEMTFGGRYVIMMMALFSIYTGLIYNEFFSAPSELFGPSAYACCDPSCRYIISVIDSRIYGHTCDSTTVGLIKVQPTYPFNVDPRWQMIFLNSLFGYLSILIIVKLCTGSQADLYHVMIYMFLSPTGDLGENQLFVGQKFLQILLLLSALVAVSWMPFPKPFLLK*********************************

MASKLRFIREEMSKAGLLPSTQSAGSVDIDFASLEAGEFFSSA************SHHLGEGFIDSPLSVEQWPYYKRKDNGFERILFHATRGNVFLKQSVVEDPV***********RISELRTTIDVGLVHRSNLLQTIADQFEQWNLLMEKVIYRTLNMLSMDVTKKCLVAESWCPVSAANQIENTLQRATINSNSQIGAIFQVLQIKGSLPTYFPDKQFCFCFSRNCGCIWKLGDIVEMTFGGRYVIMMMALFSIYTGLIYNEFFSAPSELFGPSAYACCDPSCRYIISVIDSRIYGHTCDSTTVGLIKVQPTYPFNVDPRWQMIFLNSLFGYLSILIIVKLCTGSQADLYHVMIYMFLSPTGDLGENQLFVGQKFLQILLLLSALVAVSWMPFPKPFLLKKQYQELKFQNKFYKGDGYKFPPFSFALLGEDDE

**SKLRFIREEMSKAGLL*******SVDIDFASLEAGEFFSSALSRAAAQQKELESHHLGEGFIDSPLSVEQWPYYKRKDNGFERILFHATRGNVFLKQSVVEDPVADPVSGEKVSGRISELRTTIDVGLVHRSNLLQTIADQFEQWNLLMEKVIYRTLNMLSMDVTKKCLVAESWCPVSAANQIENTLQRATINSNSQIGAIFQVLQIKGSLPTYFPDKQFCFCFSRNCGCIWKLGDIVEMTFGGRYVIMMMALFSIYTGLIYNEFFSAPSELFGPSAYACCDPSCRYIISVIDSRIYGHTCDSTTVGLIKVQPTYPFNVDPRWQMIFLNSLFGYLSILIIVKLCTGSQADLYHVMIYMFLSPTGDLGENQLFVGQKFLQILLLLSALVAVSWMPFPKPFLLKKQYQELK**************************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		437	2.2.26 [Sep-21-2011]
Q8W4S4		821	Vacuolar proton ATPase a3	yes	no	0.917	0.488	0.415	1e-105
Q9SJT7		821	Vacuolar proton ATPase a2	no	no	0.935	0.498	0.384	1e-105
Q8RWZ7		817	Vacuolar proton ATPase a1	no	no	0.917	0.490	0.351	3e-84
P25286		838	V-type proton ATPase 116	yes	no	0.755	0.393	0.260	5e-37
Q9Z1G4		839	V-type proton ATPase 116	yes	no	0.755	0.393	0.260	1e-36
Q9I8D0		838	V-type proton ATPase 116	yes	no	0.759	0.396	0.270	2e-36
Q29466		838	V-type proton ATPase 116	yes	no	0.755	0.393	0.265	2e-33
A1A5G6		837	V-type proton ATPase 116	yes	no	0.752	0.393	0.262	3e-33
Q8AVM5		831	V-type proton ATPase 116	N/A	no	0.752	0.395	0.260	2e-32
Q93050		837	V-type proton ATPase 116	yes	no	0.771	0.402	0.256	3e-31

>sp\|Q8W4S4\|VHAA3_ARATH Vacuolar proton ATPase a3 OS=Arabidopsis thaliana GN=VHA-a3 PE=1 SV=1	Back alignment and function desciption

 Score =  383 bits (983), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 257/619 (41%), Positives = 308/619 (49%), Gaps = 218/619 (35%)

Query: 1   MASKLRFIREEMSKAGLLPSTQSAGSVDIDFASLE------------------------- 35
           MA K+RF R++MSKAG+          DID   +E                         
Sbjct: 73  MARKIRFFRDQMSKAGVPAKEMQGKENDIDLDDVEVKLGELEAELVEINANNDKLQRSYN 132

Query: 36  -----------AGEFFSSALSRAAAQQKELESHHLGEGFIDSPLSVEQWPYY-------- 76
                      AGEFFSSA   AA QQ+E ES   GE  ++SPL  E+            
Sbjct: 133 ELMEYKLVLQKAGEFFSSAHRSAADQQRETESQQAGEDLLESPLLQEEKSIDSTKQVKLG 192

Query: 77  -------KRKDNGFERILFHATRGNVFLKQSVVEDPVADPVSGEK--------------- 114
                  + K   FERILF ATRGN+F++Q+V+E+PV DP SGEK               
Sbjct: 193 FLTGLVPREKSMVFERILFRATRGNIFIRQTVIEEPVIDPNSGEKAEKNVFVVFYSGERA 252

Query: 115 -------------------------------VSGRISELRTTIDVGLVHRSNLLQTIADQ 143
                                          VSGR+SEL+TTID GL  R+ LLQTI D+
Sbjct: 253 KSKILKICEAFGANRYPFSEDLGRQAQMITEVSGRLSELKTTIDAGLGQRNILLQTIGDK 312

Query: 144 FEQWNLLM--EKVIYRTLNMLSMDVTKKCLVAESWCPVSAANQIENTLQRATINSNSQIG 201
           FE WNL +  EK IY TLNMLS+DVTKKCLVAE W PV A+ +I++ LQRA ++SNSQ+G
Sbjct: 313 FELWNLKVRKEKAIYHTLNMLSLDVTKKCLVAEGWSPVFASREIQDALQRAAVDSNSQVG 372

Query: 202 AIFQVLQIKGSLPTYFPDKQFC-----------------------------FCFSRNCG- 231
           +IFQVL+ K S PTYF   +F                              F F+   G 
Sbjct: 373 SIFQVLRTKESPPTYFRTNKFTSAIQEIVDAYGVAKYQEANPGVFTIVTFPFLFAVMFGD 432

Query: 232 -----CIW----------------KLGDIVEMTFGGRYVIMMMALFSIYTGLIYNEFFSA 270
                CI                 KLGDI+EM FGGRYVI+MM+LFSIYTGLIYNEFFS 
Sbjct: 433 WGHGICILLATMYLILKEKKLASQKLGDIMEMAFGGRYVILMMSLFSIYTGLIYNEFFSI 492

Query: 271 PSELFGPSAYACCDPSCRYIISVIDSRIYGHTCDSTTVGLIKVQPTYPFNVDPRW----- 325
           P  LF PSAY C D SC                ++TT+GLIKV+ TYPF +DP W     
Sbjct: 493 PFPLFAPSAYDCRDVSC---------------SEATTIGLIKVRDTYPFGLDPVWHGSRS 537

Query: 326 -----------------------------------------------QMIFLNSLFGYLS 338
                                                          QMIFLNSLFGYLS
Sbjct: 538 ELPFLNSLKMKMSILLGVSQMNLGIIMSYFNARFFKSSVNIWFQFIPQMIFLNSLFGYLS 597

Query: 339 ILIIVKLCTGSQADLYHVMIYMFLSPTGDLGENQLFVGQKFLQILLLLSALVAVSWMPFP 398
           +LII+K CTGSQADLYHVMIYMFLSP  +LGENQLF  QK LQ++LL  ALV+V  M  P
Sbjct: 598 VLIIIKWCTGSQADLYHVMIYMFLSPMDELGENQLFPHQKTLQLVLLFLALVSVPCMLLP 657

Query: 399 KPFLLKKQYQELKFQNKFY 417
           KPF+LKKQ+ E + Q + Y
Sbjct: 658 KPFILKKQH-EARHQGQAY 675

Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase. Involved in vacuolar nutrient storage (e.g. accumulation and storage of nitrate) and in tolerance to some toxic ions (e.g. zinc ions sequestration in vacuoles).
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SJT7\|VHAA2_ARATH Vacuolar proton ATPase a2 OS=Arabidopsis thaliana GN=VHA-a2 PE=1 SV=1	Back alignment and function description

>sp\|Q8RWZ7\|VHAA1_ARATH Vacuolar proton ATPase a1 OS=Arabidopsis thaliana GN=VHA-a1 PE=1 SV=1	Back alignment and function description

>sp\|P25286\|VPP1_RAT V-type proton ATPase 116 kDa subunit a isoform 1 OS=Rattus norvegicus GN=Atp6v0a1 PE=2 SV=1	Back alignment and function description

>sp\|Q9Z1G4\|VPP1_MOUSE V-type proton ATPase 116 kDa subunit a isoform 1 OS=Mus musculus GN=Atp6v0a1 PE=1 SV=3	Back alignment and function description

>sp\|Q9I8D0\|VPP1_CHICK V-type proton ATPase 116 kDa subunit a isoform 1 OS=Gallus gallus GN=ATP6V0A1 PE=1 SV=1	Back alignment and function description

>sp\|Q29466\|VPP1_BOVIN V-type proton ATPase 116 kDa subunit a isoform 1 OS=Bos taurus GN=ATP6V0A1 PE=2 SV=1	Back alignment and function description

>sp\|A1A5G6\|VPP1_XENTR V-type proton ATPase 116 kDa subunit a isoform 1 OS=Xenopus tropicalis GN=atp6v0a1 PE=2 SV=1	Back alignment and function description

>sp\|Q8AVM5\|VPP1_XENLA V-type proton ATPase 116 kDa subunit a isoform 1 OS=Xenopus laevis GN=atp6v0a1 PE=2 SV=1	Back alignment and function description

>sp\|Q93050\|VPP1_HUMAN V-type proton ATPase 116 kDa subunit a isoform 1 OS=Homo sapiens GN=ATP6V0A1 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		437
255538810		810	vacuolar proton atpase, putative [Ricinu	0.901	0.486	0.470	1e-124
317106676		817	JHL18I08.13 [Jatropha curcas]	0.901	0.482	0.472	1e-123
302142583		808	unnamed protein product [Vitis vinifera]	0.917	0.496	0.459	1e-123
225458115		872	PREDICTED: vacuolar proton translocating	0.917	0.459	0.459	1e-122
225427716		822	PREDICTED: vacuolar proton translocating	0.917	0.487	0.459	1e-122
224085778		817	predicted protein [Populus trichocarpa]	0.938	0.501	0.436	1e-116
224062057		807	predicted protein [Populus trichocarpa]	0.935	0.506	0.439	1e-115
449469919		808	PREDICTED: vacuolar proton ATPase a3-lik	0.901	0.487	0.439	1e-112
356518008		815	PREDICTED: vacuolar proton translocating	0.935	0.501	0.428	1e-111
224080403		821	predicted protein [Populus trichocarpa]	0.899	0.478	0.436	1e-111

>gi\|255538810\|ref\|XP_002510470.1\| vacuolar proton atpase, putative [Ricinus communis] gi\|223551171\|gb\|EEF52657.1\| vacuolar proton atpase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 288/612 (47%), Positives = 322/612 (52%), Gaps = 218/612 (35%)

Query: 1   MASKLRFIREEMSKAGLLPSTQSAGSVDIDFASLE------------------------- 35
           MA KLRF RE M+K  LLPST+SA  +DI+  +LE                         
Sbjct: 62  MARKLRFFRENMTKTSLLPSTRSARGIDINLDNLEVKLAELEAELIEINSNNEKLERTYN 121

Query: 36  -----------AGEFFSSALSRAAAQQKELESHHLGEGFIDSPLSVEQWPYY-------- 76
                      AGE F SA    A QQ+EL+ H+ GEG IDSPL +EQ            
Sbjct: 122 ELLEYKLVLQKAGELFHSAQKSGAVQQRELDVHNNGEGSIDSPLLLEQEMVTDPSKQVKL 181

Query: 77  --------KRKDNGFERILFHATRGNVFLKQSVVEDPVADPVSGEKV------------- 115
                   + K   FERILF ATRGNVFLKQSVVE+ V DPVSGEKV             
Sbjct: 182 GYISGLVPREKSIAFERILFRATRGNVFLKQSVVENSVVDPVSGEKVEKNVFVVFYSGER 241

Query: 116 ---------------------------------SGRISELRTTIDVGLVHRSNLLQTIAD 142
                                            SGR++EL+TTID G  HRSNLLQTI  
Sbjct: 242 AKNKILKICEAFGANRYPFNEDLSKQYQMMTEVSGRLTELKTTIDAGSAHRSNLLQTIGF 301

Query: 143 QFEQWNLLM--EKVIYRTLNMLSMDVTKKCLVAESWCPVSAANQIENTLQRATINSNSQI 200
           + EQWNLL+  EK IY TLNMLSMDVTKKC+VAE WCPV A++QI NTL++AT++SNSQI
Sbjct: 302 ELEQWNLLVKKEKSIYHTLNMLSMDVTKKCVVAEGWCPVFASDQIRNTLRQATVDSNSQI 361

Query: 201 GAIFQVLQIKGSLPTYFPDKQFCFCFSR-------------NCGCI-------------- 233
           GAIFQVLQ K S PTYF   +F   F               N G                
Sbjct: 362 GAIFQVLQTKESPPTYFLTNKFTSAFQEIVDAYGIAKYQEANPGVYTIITFPFLFAVMFG 421

Query: 234 -W-----------------------KLGDIVEMTFGGRYVIMMMALFSIYTGLIYNEFFS 269
            W                       KLGDI+EMTFGGRYVIMMMA+FSIYTGLIYNEFFS
Sbjct: 422 DWGHGICLLLATLYFITREKKLSSQKLGDIMEMTFGGRYVIMMMAIFSIYTGLIYNEFFS 481

Query: 270 APSELFGPSAYACCDPSCRYIISVIDSRIYGHTCDSTTVGLIKVQPTYPFNVDPRW---- 325
            P ELFGPSAYAC D SCR               D+ T GLIKV+ TYPF VDP+W    
Sbjct: 482 VPFELFGPSAYACRDQSCR---------------DAYTAGLIKVRATYPFGVDPKWHGTR 526

Query: 326 ------------------------------------------------QMIFLNSLFGYL 337
                                                           QMIFLNSLFGYL
Sbjct: 527 SELPFLNSLKMKMSILLGVAQMNLGIVMSYFNAKFFGDNLNVRYQFVPQMIFLNSLFGYL 586

Query: 338 SILIIVKLCTGSQADLYHVMIYMFLSPTGDLGENQLFVGQKFLQILLLLSALVAVSWMPF 397
           S+LIIVK CTGSQADLYHVMIYMFLSP  DLG+NQLFVGQKFLQILLL+ ALVA  WM F
Sbjct: 587 SLLIIVKWCTGSQADLYHVMIYMFLSPIDDLGDNQLFVGQKFLQILLLILALVAAPWMLF 646

Query: 398 PKPFLLKKQYQE 409
           PKP LLKKQ++E
Sbjct: 647 PKPLLLKKQHEE 658

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|317106676\|dbj\|BAJ53179.1\| JHL18I08.13 [Jatropha curcas]	Back alignment and taxonomy information

>gi\|302142583\|emb\|CBI19786.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225458115\|ref\|XP_002280787.1\| PREDICTED: vacuolar proton translocating ATPase 100 kDa subunit-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225427716\|ref\|XP_002265086.1\| PREDICTED: vacuolar proton translocating ATPase 100 kDa subunit [Vitis vinifera] gi\|297744757\|emb\|CBI38019.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224085778\|ref\|XP_002307693.1\| predicted protein [Populus trichocarpa] gi\|222857142\|gb\|EEE94689.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224062057\|ref\|XP_002300733.1\| predicted protein [Populus trichocarpa] gi\|222842459\|gb\|EEE80006.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449469919\|ref\|XP_004152666.1\| PREDICTED: vacuolar proton ATPase a3-like [Cucumis sativus] gi\|449523982\|ref\|XP_004169002.1\| PREDICTED: vacuolar proton ATPase a3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356518008\|ref\|XP_003527676.1\| PREDICTED: vacuolar proton translocating ATPase 100 kDa subunit-like [Glycine max]	Back alignment and taxonomy information

>gi\|224080403\|ref\|XP_002306128.1\| predicted protein [Populus trichocarpa] gi\|222849092\|gb\|EEE86639.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		437
TAIR\|locus:2050085		821	VHA-A2 "vacuolar proton ATPase	0.258	0.137	0.591	3.1e-108
TAIR\|locus:2120217		821	VHA-A3 "vacuolar proton ATPase	0.249	0.132	0.639	8e-86
TAIR\|locus:2056598		817	VHA-A1 "vacuolar proton ATPase	0.208	0.111	0.663	2.3e-76
UNIPROTKB\|B7Z641		788	ATP6V0A1 "cDNA FLJ54439, highl	0.334	0.185	0.322	1.2e-36
UNIPROTKB\|B7Z2A9		794	ATP6V0A1 "V-type proton ATPase	0.334	0.183	0.322	1.2e-36
ZFIN\|ZDB-GENE-050522-215		839	atp6v0a1b "ATPase, H+ transpor	0.334	0.174	0.335	1.4e-36
RGD\|68405		838	Atp6v0a1 "ATPase, H+ transport	0.334	0.174	0.328	1.7e-36
MGI\|MGI:103286		839	Atp6v0a1 "ATPase, H+ transport	0.334	0.174	0.328	4.4e-36
UNIPROTKB\|F5H569		837	ATP6V0A1 "V-type proton ATPase	0.334	0.174	0.322	4.6e-36
UNIPROTKB\|Q93050		837	ATP6V0A1 "V-type proton ATPase	0.334	0.174	0.322	4.6e-36

TAIR\|locus:2050085 VHA-A2 "vacuolar proton ATPase A2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 341 (125.1 bits), Expect = 3.1e-108, Sum P(5) = 3.1e-108
 Identities = 68/115 (59%), Positives = 86/115 (74%)

Query:   114 KVSGRISELRTTIDVGLVHRSNLLQTIADQFEQWNLLM--EKVIYRTLNMLSMDVTKKCL 171
             +VSGR+SEL+TTI  GL  R+ LL+TI D+FEQWNL +  EK IY TLNMLS+DVTKKCL
Sbjct:   284 EVSGRLSELKTTIGAGLDQRNILLETIGDKFEQWNLKIRKEKAIYHTLNMLSLDVTKKCL 343

Query:   172 VAESWCPVSAANQIENTLQRATINSNSQIGAIFQVLQIKGSLPTYFPDKQFCFCF 226
             V E W PV AA +I++ L RA ++SNSQ+G+IFQVL+ K   PT+F   +F   F
Sbjct:   344 VGEGWSPVFAATEIQDALHRAAVDSNSQVGSIFQVLRTKEMPPTFFRTNKFTTAF 398

GO:0005737 "cytoplasm" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009678 "hydrogen-translocating pyrophosphatase activity" evidence=IDA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IDA

GO:0031669 "cellular response to nutrient levels" evidence=IGI

GO:0032119 "sequestering of zinc ion" evidence=IMP

GO:0043181 "vacuolar sequestering" evidence=IMP

GO:0045735 "nutrient reservoir activity" evidence=IMP

GO:0070072 "vacuolar proton-transporting V-type ATPase complex assembly" evidence=IMP

GO:0071472 "cellular response to salt stress" evidence=IGI

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR\|locus:2120217 VHA-A3 "vacuolar proton ATPase A3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2056598 VHA-A1 "vacuolar proton ATPase A1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|B7Z641 ATP6V0A1 "cDNA FLJ54439, highly similar to Vacuolar proton translocating ATPase 116 kDa subunit a isoform 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|B7Z2A9 ATP6V0A1 "V-type proton ATPase 116 kDa subunit a isoform 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050522-215 atp6v0a1b "ATPase, H+ transporting, lysosomal V0 subunit a isoform 1b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

RGD\|68405 Atp6v0a1 "ATPase, H+ transporting, lysosomal V0 subunit A1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:103286 Atp6v0a1 "ATPase, H+ transporting, lysosomal V0 subunit A1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F5H569 ATP6V0A1 "V-type proton ATPase 116 kDa subunit a isoform 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q93050 ATP6V0A1 "V-type proton ATPase 116 kDa subunit a isoform 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		437
pfam01496		707	pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni	1e-26
pfam01496		707	pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni	0.004

>gnl\|CDD\|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family	Back alignment and domain information

 Score =  112 bits (281), Expect = 1e-26
 Identities = 98/478 (20%), Positives = 151/478 (31%), Gaps = 191/478 (39%)

Query: 79  KDNGFERILFHATRGNVFLKQSVVEDPVADP--------VSGEKVSGRI----------- 119
           K   FER L+ A RG  +++Q+ +E+P+ DP          G++   ++           
Sbjct: 153 KLEAFERELWRACRG--YIRQAEIEEPLEDPKKTVFIIFFVGKEDLDKVKKILDSFGFEL 210

Query: 120 -------------------------SELRTTIDVGLVHRSNLLQTIADQFEQWN--LLME 152
                                      L  T      H   +L  IAD+   W+  +  E
Sbjct: 211 YDVPETEGERSELISKVNKRIEELQRVLEQTES----HLEKVLVKIADELLAWDEQVSKE 266

Query: 153 KVIYRTLNMLSMDVTKKCLVAESWCPVSAANQIENTLQRATINSNSQIGAIFQVLQIKGS 212
           K +Y TLN+ +     K L+AE W P     +++  L+ AT  S S + +I   ++    
Sbjct: 267 KAVYETLNLFN--YDTKTLIAEGWVPAKDLEKLKAALENATEGSGS-VPSIENDIETNEE 323

Query: 213 LPTYFPDKQFC-------------------------FCFSRNCGCIWKLGDIV------- 240
            PTY  + +F                            F    G +   GD         
Sbjct: 324 PPTYLKNNKFTAPFQMIVDAYGIPKYREIDPTPFTIITFPFFFGMM--FGDAGYGLLMFL 381

Query: 241 -------------EMTFGGRYVIMMMALFSIYTGLIYNEFFSAPSELFGPSAYACCDPSC 287
                        +  F GRY++++M +FSIYTG IYN+ F     +FG           
Sbjct: 382 IALLLVLLEKKLGKKKFKGRYILLLMGVFSIYTGFIYNDCFGKSLNIFG----------- 430

Query: 288 RYIISVIDSRIYGHTCDSTTVGLIKVQPTYPFNVDPRW---------------------- 325
                              T+ L   +  YPF +DP W                      
Sbjct: 431 -SGWLWPV-----MIKSGETLTLAPHEGPYPFGIDPEWNGVENKLLFLNSYKMKLSIILG 484

Query: 326 ------------------------------QMIFLNSLFGYLSILIIVKLCTGSQADLYH 355
                                         Q+ +L  +FGYL ILII K           
Sbjct: 485 VIHMTFGLFLGFFNHVKFKSKIDIKDAFIPQLSWLIIIFGYLVILIIYKWLVDWAKTSKP 544

Query: 356 V------MIYMFLSPTGDLGENQLFVGQKFLQILLLLSALVAVSWMPFPKPFLLKKQY 407
                  +I MFL P               +Q+ L++ ALV V  +   KP  L ++ 
Sbjct: 545 APSLLIGLINMFLFPG--------------VQVFLVVLALVCVPILLLLKPLFLMREG 588

This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) subunits, as well as V-type ATP synthase subunit i. The V-type ATPases family are proton pumps that acidify intracellular compartments in eukaryotic cells for example yeast central vacuoles, clathrin-coated and synaptic vesicles. They have important roles in membrane trafficking processes. The 116kDa subunit (subunit a) in the V-type ATPase is part of the V0 functional domain responsible for proton transport. The a subunit is a transmembrane glycoprotein with multiple putative transmembrane helices it has a hydrophilic amino terminal and a hydrophobic carboxy terminal. It has roles in proton transport and assembly of the V-type ATPase complex. This subunit is encoded by two homologous gene in yeast VPH1 and STV1. Length = 707

>gnl\|CDD\|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		437
KOG2189		829	consensus Vacuolar H+-ATPase V0 sector, subunit a	100.0
PF01496		759	V_ATPase_I: V-type ATPase 116kDa subunit family ;	100.0
COG1269		660	NtpI Archaeal/vacuolar-type H+-ATPase subunit I [E	99.88
PRK05771		646	V-type ATP synthase subunit I; Validated	99.8
PF10538		24	ITAM_Cys-rich: Immunoreceptor tyrosine-based activ	85.32

>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]	Back alignment and domain information

Probab=100.00  E-value=1.2e-130  Score=1045.94  Aligned_cols=390  Identities=41%  Similarity=0.688  Sum_probs=330.1

Q ss_pred             CchhHHHHHHHHHhCCCCCC---CCCCCCcchhhhhhh------------------------------------hhhhhh
Q 038653            1 MASKLRFIREEMSKAGLLPS---TQSAGSVDIDFASLE------------------------------------AGEFFS   41 (437)
Q Consensus         1 meRklRf~~~ei~k~~~~~~---~~~~~~~~~~ld~le------------------------------------~~~ff~   41 (437)
                      |||||||+++||.|++++..   +.+.++.+.+++++|                                    +++||+
T Consensus        61 meRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~~~vl~~t~~Ff~  140 (829)
T KOG2189|consen   61 MERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLELKYVLEKTDEFFS  140 (829)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            79999999999999998754   233455666777777                                    455666


Q ss_pred             hhhhhHHHHHHHhhhccCCCCCCCCCCCCCC-------------cCccCCchhhHHHHHHHhcCCceEEEeeecCCCccC
Q 038653           42 SALSRAAAQQKELESHHLGEGFIDSPLSVEQ-------------WPYYKRKDNGFERILFHATRGNVFLKQSVVEDPVAD  108 (437)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------~~I~~~k~~~FeRiLwRatRGN~~~~~~~i~~~~~d  108 (437)
                      .+.+..-. .+..      .+..+.++....             .+|+|+|.++|||+||||||||+|+|+++||+|+.|
T Consensus       141 ~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~l~FvaGvI~r~k~~~fER~LWRa~Rgn~f~r~~~ie~~l~d  213 (829)
T KOG2189|consen  141 TSVQESFE-DDET------ADLGEGPLESAEKGPFDGLKLGFVAGVINREKVFAFERMLWRACRGNLFIRQSDIEEPLED  213 (829)
T ss_pred             cchhhhhc-chhh------hhhcccccchhccCCCCcccceeEEeeechhHHHHHHHHHHHHhccceEEEeecccccccC
Confidence            42210000 0000      000001111100             159999999999999999999999999999999999


Q ss_pred             CCCccc----------------------------------------------hhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 038653          109 PVSGEK----------------------------------------------VSGRISELRTTIDVGLVHRSNLLQTIAD  142 (437)
Q Consensus       109 p~tge~----------------------------------------------v~~ri~dl~~vl~~t~~~~~~~L~~ia~  142 (437)
                      |+|||.                                              |++||+||++||++|++||+++|+.+++
T Consensus       214 p~Tge~~~K~vFivF~~Geql~~kIkKIcd~f~a~~yp~p~~~~er~~~~~~v~~ri~DL~~Vl~~t~~~r~~vL~~~~~  293 (829)
T KOG2189|consen  214 PKTGEPVEKNVFIVFFQGEQLKQKIKKICDGFGATLYPCPESPEERKEMLLEVNTRISDLQTVLDQTEDHRSRVLQAAAK  293 (829)
T ss_pred             CccCCcceeEEEEEEeecHHHHHHHHHHHhccCcEeecCCCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            999987                                              9999999999999999999999999999


Q ss_pred             HhHHHHHH--HHHHHHHHhcccccccCCceEEEEEEeecCChhHHHHHHHHHHHhcCCcccceeEecccCCCCCCccCCC
Q 038653          143 QFEQWNLL--MEKVIYRTLNMLSMDVTKKCLVAESWCPVSAANQIENTLQRATINSNSQIGAIFQVLQIKGSLPTYFPDK  220 (437)
Q Consensus       143 ~l~~W~~~--KEKaIY~tLN~~~~D~t~k~LiaE~W~P~~~~~~I~~aL~~~~~~sgs~v~~i~~~i~t~~~PPTyfrTN  220 (437)
                      +++.|.++  |||||||||||||+|+|+||||||||||+.|++.||+||++++..+||+|++|+|+++|+++||||||||
T Consensus       294 ~l~~W~~~v~K~KaIyhtLN~fn~Dvt~KCLIaE~W~P~~dl~~vq~aL~~~~~~sgS~v~~i~nv~~T~e~PPTy~RTN  373 (829)
T KOG2189|consen  294 NLPSWLIKVRKEKAIYHTLNMFNFDVTQKCLIAEGWCPVADLPDLQRALERGSEESGSQVPSILNVMETNEMPPTYFRTN  373 (829)
T ss_pred             hhhhHHHHHHHHHHHHHHHhccCccccCceEEEEeecchhhHHHHHHHHHHhhhhcCCcchhhHhheecCCCCCcchhcc
Confidence            99999999  9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeccee-------------eccce------------------------------ee--------c-cchhhhhhcchhH
Q 038653          221 QFCFCFS-------------RNCGC------------------------------IW--------K-LGDIVEMTFGGRY  248 (437)
Q Consensus       221 kFT~~FQ-------------vNPa~------------------------------il--------~-~~ei~~m~f~GRY  248 (437)
                      |||++||             ||||+                              |+        | .||||+|+|+|||
T Consensus       374 KFT~~FQ~IvDaYGVa~YrEvNPa~yTiITFPFLFAVMFGD~GHG~imlL~al~~Vl~Ekkl~~~k~~~EI~~mfF~GRY  453 (829)
T KOG2189|consen  374 KFTAGFQNIVDAYGVASYREVNPAPYTIITFPFLFAVMFGDLGHGLIMLLAALWMVLNEKKLASQKIGDEIFNMFFGGRY  453 (829)
T ss_pred             hhhHHHHHHHHhcccccccccCCCceeEeehHHHHHHHhcccchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhcchH
Confidence            9999999             99999                              11        2 4799999999999


Q ss_pred             HHHHHHHHHHHHhhhhhcccccccccCCCCCccccCCCCccceeeccccccCCcCCCccccccccCCccccccchHH---
Q 038653          249 VIMMMALFSIYTGLIYNEFFSAPSELFGPSAYACCDPSCRYIISVIDSRIYGHTCDSTTVGLIKVQPTYPFNVDPRW---  325 (437)
Q Consensus       249 iILLMGlFSiYtGfIYND~FS~slnlFg~S~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YPFGiDP~W---  325 (437)
                      ||||||+||||||||||||||||+|||| |+|+++++... ...+..+. .|+..     + .+.++||||||||+|   
T Consensus       454 IIlLMGlFSiYTGliYND~FSks~niFg-S~W~~~~~~~~-~~~~e~~~-~p~~~-----~-~~~~gpYPfGvDPiW~~a  524 (829)
T KOG2189|consen  454 IILLMGLFSIYTGLIYNDFFSKSMNIFG-SSWSNPYNVTA-VLCSEALL-TPEIG-----G-AKFGGPYPFGVDPIWHLA  524 (829)
T ss_pred             HHHHHHHHHHHHhhhhhhhccccccccc-CcccCccccch-hccccccc-cCCCC-----c-ccccCCCCCcCChhhhcc
Confidence            9999999999999999999999999999 99999875431 11111111 13322     1 123569999999999   


Q ss_pred             -------------------------------------------------HHHHHHHHhhhheeeEEEeccC------CCC
Q 038653          326 -------------------------------------------------QMIFLNSLFGYLSILIIVKLCT------GSQ  350 (437)
Q Consensus       326 -------------------------------------------------qllFl~~lFGYL~~lIi~KW~~------~~a  350 (437)
                                                                       |++||+|+||||||+||||||.      .||
T Consensus       525 ~N~L~FLNS~KMKmSIIlGi~hM~fGv~lS~~N~~~Fk~~~~I~~~FIPq~iFl~~iFgYL~~~IiyKW~~~~~~~~~~a  604 (829)
T KOG2189|consen  525 DNKLSFLNSMKMKMSIILGIIHMTFGVILSVFNHIYFKSKLDIILVFIPQLIFLLSLFGYLVFLIIYKWLVFWAKTSNCA  604 (829)
T ss_pred             cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchheeeeccHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC
Confidence                                                             9999999999999999999994      379


Q ss_pred             chHHHHHHHhhccCCCCCCCcccccchhhHHHHHHHHHHHHhhcccccchhhhHHHh
Q 038653          351 ADLYHVMIYMFLSPTGDLGENQLFVGQKFLQILLLLSALVAVSWMPFPKPFLLKKQY  407 (437)
Q Consensus       351 PSLl~~lInMfL~pg~~~~~~~ly~gQ~~vQ~~LlliAlicVP~MLl~KPl~l~~~~  407 (437)
                      ||||++||||||+|+++. +.+|||||+.||++||++|++|||||||+||++++++|
T Consensus       605 PslLi~lInMFl~~~~~~-~~~lyp~Q~~vQ~~ll~~Al~cVPwmLl~KPl~l~~~~  660 (829)
T KOG2189|consen  605 PSLLIMLINMFLFPGTDA-GFQLYPGQKQVQLILLVLALVCVPWMLLGKPLYLRRRH  660 (829)
T ss_pred             chHHHHHHHHHhCCCCCC-ccccCCchHHHHHHHHHHHHHHHHHHHhcchHHHHHHh
Confidence            999999999999999754 34999999999999999999999999999999998876

>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]	Back alignment and domain information

>PRK05771 V-type ATP synthase subunit I; Validated	Back alignment and domain information

>PF10538 ITAM_Cys-rich: Immunoreceptor tyrosine-based activation motif; InterPro: IPR012316 Signal transduction by T and B cell antigen receptors and certain receptors for Ig Fc regions involves a conserved sequence motif, termed an immunoreceptor tyrosine-based activation motif (ITAM)	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		437
3rrk_A		357	V-type ATPase 116 kDa subunit; alpha beta fold, pr	1e-09

>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber} Length = 357	Back alignment and structure

 Score = 58.6 bits (141), Expect = 1e-09
 Identities = 26/247 (10%), Positives = 55/247 (22%), Gaps = 56/247 (22%)

Query: 1   MASKLRFIREEMSKAGLLPSTQSAGSVDIDFASLEAGEFFSSALSRAAAQQKELESH--- 57
             + +    + ++  GL     S         +       +S       ++  LE     
Sbjct: 65  WEAVVSQAEQSLTVVGLATVPSSKPFTGSLEEAEAVLRPVASRAEVLGKERAALEEEIQT 124

Query: 58  -----HLGEGFIDSPLSVEQWPYYKR---------KDNGFERILFHATRGNVFLKQSVVE 103
                   E        +++ P             +     + L  A      L+   +E
Sbjct: 125 IELFGKAAEKLAALAHGLDESPRLGVIPFLVAKPEELEAVRKALQEALADRFVLEAEPLE 184

Query: 104 DPVADPV-----------------------------------SGEKVSGRISELRTTIDV 128
           + +A  V                                   +  ++  R       +  
Sbjct: 185 NQLAALVVVKRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVG 244

Query: 129 GLVHRSNLLQTIADQFEQWN--LLMEKVIYRTLNMLSMDVTKKCLVAESWCPVSAANQIE 186
                + L +   +           E   Y+ +    M   K       W P  A  ++E
Sbjct: 245 IREEVARLSRESGEALIALWTRAKDEVARYKAVAD--MAAGKYGAALMGWVPQKAKGKVE 302

Query: 187 NTLQRAT 193
             L R  
Sbjct: 303 EALGRLR 309

PyMOL of 3rrk

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		437
3rrk_A		357	V-type ATPase 116 kDa subunit; alpha beta fold, pr	99.73

>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}	Back alignment and structure

Probab=99.73  E-value=2.8e-18  Score=172.09  Aligned_cols=148  Identities=15%  Similarity=0.150  Sum_probs=99.2

Q ss_pred             Cc-cCCchhhHHHHHHHhcCCceEEEeeecCCC-------------------------ccC-CC-Cc--------cchhc
Q 038653           74 PY-YKRKDNGFERILFHATRGNVFLKQSVVEDP-------------------------VAD-PV-SG--------EKVSG  117 (437)
Q Consensus        74 ~I-~~~k~~~FeRiLwRatRGN~~~~~~~i~~~-------------------------~~d-p~-tg--------e~v~~  117 (437)
                      +| ++++...|+|.|||+++|..+....+-...                         ..+ |. .|        +.+++
T Consensus       154 ~ip~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~  233 (357)
T 3rrk_A          154 LVAKPEELEAVRKALQEALADRFVLEAEPLENQLAALVVVKRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKE  233 (357)
T ss_dssp             EESCHHHHHHHHHHHHHHHTTSCEEEEEECSSSEEEEEEEEGGGHHHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHH
T ss_pred             EecChhhHHHHHHHHHHhcCCeEEEEeecCCCcEEEEEEEEHHHHHHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHH
Confidence            58 899999999999999999433322221110                         001 21 23        12999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHhcccccccCCceEEEEEEeecCChhHHHHHHHHHHHh
Q 038653          118 RISELRTTIDVGLVHRSNLLQTIADQFEQWNLL--MEKVIYRTLNMLSMDVTKKCLVAESWCPVSAANQIENTLQRATIN  195 (437)
Q Consensus       118 ri~dl~~vl~~t~~~~~~~L~~ia~~l~~W~~~--KEKaIY~tLN~~~~D~t~k~LiaE~W~P~~~~~~I~~aL~~~~~~  195 (437)
                      ||++++++++.+++++.+++...+..+..|...  +||++|+++|+|.  ++++|++++||||+++++.++.+|++    
T Consensus       234 ~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~gWvp~~~~~~~~~~l~~----  307 (357)
T 3rrk_A          234 RARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVADMA--AGKYGAALMGWVPQKAKGKVEEALGR----  307 (357)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCSEEEEEEECTTTHHHHHHTCCS----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCcEEEEEEEeeHHHHHHHHHHHHh----
Confidence            999999999999999999999999999999999  9999999999874  79999999999999999999999975    


Q ss_pred             cCCcccceeEecccC---CCCCCccCCCceeccee
Q 038653          196 SNSQIGAIFQVLQIK---GSLPTYFPDKQFCFCFS  227 (437)
Q Consensus       196 sgs~v~~i~~~i~t~---~~PPTyfrTNkFT~~FQ  227 (437)
                      +++.+..+++...++   +.||||++|||||.+||
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~pPt~l~n~~~~~~fe  342 (357)
T 3rrk_A          308 LRDQIVYTFEPVDEHHESHQVPVTLENPAWAKPFE  342 (357)
T ss_dssp             SCEEEEC----------------------------
T ss_pred             cCCceEEEEecCCccccCCCcCEeccCCchhhHHH
Confidence            245677777777777   58999999999999999

PyMOL of 3rrk

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00