Citrus Sinensis ID: 038664

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460----
Protein Sequence
ESTVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDILEGHGGSASGTGTTTTDLIAGPKNEDMAQNLLVMATLVATLTFTSAFTIPGGYNDKGVPIFDTNLVFKAFVLTDTIAMTTSLTAAVLTFGHIF
Secondary Structure (PSIPRED)
cccccHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHcccccccccccHHHHHHcccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHccccHHHHHHHcccccccccccHHHHHHccccHHHHHHHHHHHHHHccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHccccEEEEEEccccccccccccccHHHHHcccHHHHHHHHHcccccccccccccccccHHHccccHHHHcccHHHEEEEHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
ESTVARVLFRALRRGDAATVRESARLngngildmsqnRDTALHIAARFGHKNVVMEILELrpdlvsvenhksetpmhVAARAGNFGVAKIfmrphgngnntgtfDDILRkqdeegntplhnavrkcdGKMAFTMIRKDPELICYINkagqsplsLAIDAGLTHIACCIIKeklsvldhrgpndlTLLHIAIIKSNFVVMAKILEAKRDLINVLdkrdrnplhYAAALGHFEIAcrlsdeddtlayerdcngqsplhlaseNGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISklpeiedminssdlegntplhLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVqpslhqndileghggsasgtgttttdliagpkneDMAQNLLVMATLVATLTFtsaftipggyndkgvpifdtnLVFKAFVLTDTIAMTTSLTAAVLTFGHIF
Flexible Loop (DISEMBL)
ESTVARVLfralrrgdaatvresarlngngildmsqNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEegntplhnavrkcdgKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLaaqnghanVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDILEghggsasgtgtTTTDLIAGPKNEDMAQNLLVMATLVATLTFTSAFTIPGGYNDKGVPIFDTNLVFKAFVLTDTIAMTTSLTAAVLTFGHIF
Low Complexity Region (SEG)
ESTVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDILEghggsasgtgttttDLIAGPKNEDMAQNllvmatlvatltftSAFTIPGGYNDKGVPIFDTNLVFKAFVLTDTIAMTTSLTAAVLTFGHIF
Disordered region (IsUnstruct)
*****RVLFRALRRG**********LNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVE*******MHVAARAGNFGVAKIFMRPHGN****GTFDDI************HNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQ*PLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQP*********************************MAQNLLVMATLVATLTFTSAFTIPGGYNDKGVPIFDTNLVFKAFVLTDTIAMTTSLTAAVLTFGHI*
Disordered Region (DISOPRED)
*STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDILEGHGGSA**TGTTTTDLIAGPKNEDMAQNLLVMATLVATLTFTSAFTIPGGYNDKGVPIFDTNLVFKAFVLTDTIAMTTSLTAAVLTFGHIF
Disordered Region (DISEMBL)
ESTVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDILEGHGGSASGTGTTTTDLIAGPKNEDMAQNLLVMATLVATLTFTSAFTIPGGYNDKGVPIFDTNLVFKAFVLTDTIAMTTSLTAAVLTFGHIF
Disordered Region (DISPRO)
****ARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDILEGHGGSASGTGTTTTDLIAGPKNEDMAQNLLVMATLVATLTFTSAFTIPGGYNDKGVPIFDTNLVFKAFVLTDTIAMTTSLTAAVLTFGHIF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ESTVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDILEGHGGSASGTGTTTTDLIAGPKNEDMAQNLLVMATLVATLTFTSAFTIPGGYNDKGVPIFDTNLVFKAFVLTDTIAMTTSLTAAVLTFGHIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	464	2.2.26 [Sep-21-2011]
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.674	0.597	0.293	2e-26
Q12955	4377	Ankyrin-3 OS=Homo sapiens	yes	no	0.778	0.082	0.267	1e-18
G0LXV8	1351	Alpha-latrotoxin-Lh1a (Fr	N/A	no	0.724	0.248	0.269	3e-18
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	yes	no	0.765	0.091	0.264	4e-18
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.762	0.089	0.270	7e-18
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.670	0.165	0.296	1e-17
Q02357	1862	Ankyrin-1 OS=Mus musculus	yes	no	0.670	0.167	0.296	1e-17
P23631	1401	Alpha-latrotoxin-Lt1a OS=	N/A	no	0.724	0.239	0.274	2e-17
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.818	0.644	0.243	7e-17
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.685	0.597	0.233	1e-16

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score =  120 bits (302), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 168/368 (45%), Gaps = 55/368 (14%)

Query: 116 NTPLHNAVRKCDGKMAFTMIRKD-----PELICYINKAGQSPLSLAIDAGLTHIACCIIK 170
           +TPLH AVR+    +   MI +       EL+   N++G++ L +A + G T +   ++K
Sbjct: 18  DTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAEYGYTDMVKILMK 77

Query: 171 EKLSVL-DHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGH 229
              SVL   +  N     HIA    N  V+  ++EA  +L    D      LH AA+ GH
Sbjct: 78  HSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQGH 137

Query: 230 FEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNIL 289
            EI C L D+   LA     NG++ LH A+ NG   ++K+L+      +  +DKK +  L
Sbjct: 138 GEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTAL 197

Query: 290 HLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIR 349
           H+A +  +  +V  +  +     +INS+D +GNTPLH+A   N   IV  + +   V+  
Sbjct: 198 HMAVKGQNTEIVDVL--MEADGSLINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRV 255

Query: 350 ATNEKKQTALAIVQPS-LH-----------QN-------DILEGHGGSA----------- 379
           A N+  +TAL I + + LH           QN       + +E  G S            
Sbjct: 256 AVNKSGETALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGH 315

Query: 380 ------SGTGTTTTDL--IAGPKNEDMAQNL-------LVMATLVATLTFTSAFTIPGGY 424
                   TG T  ++  IA   N+   + L        ++A L+AT+ F + F +PG Y
Sbjct: 316 EVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQY 375

Query: 425 ND--KGVP 430
            D  K VP
Sbjct: 376 TDDPKDVP 383

Arabidopsis thaliana (taxid: 3702)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 94.7 bits (234), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 115/430 (26%), Positives = 182/430 (42%), Gaps = 69/430 (16%)

Query: 9   FRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVE 68
            RA R G      +  + NG  I   +QN   ALH+A++ GH  VV E+L+ R   V   
Sbjct: 46  LRAARAGHLEKALDYIK-NGVDINICNQNGLNALHLASKEGHVEVVSELLQ-REANVDAA 103

Query: 69  NHKSETPMHVAARAGNFGVAKI--------------------------------FMRPHG 96
             K  T +H+A+ AG   V K+                                F+  +G
Sbjct: 104 TKKGNTALHIASLAGQAEVVKVLVTNGANVNAQSQNGFTPLYMAAQENHLEVVKFLLDNG 163

Query: 97  NGNNTGTFD-----------------DILRKQDEEGNT---PLHNAVRKCDGKMAFTMIR 136
              +  T D                  +L + D +G      LH A RK D K A  +++
Sbjct: 164 ASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARKDDTKAAALLLQ 223

Query: 137 KDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNF 196
            D       +K+G +PL +A   G  ++A  ++    +V D    ND+T LH+A  + N 
Sbjct: 224 NDNNADVE-SKSGFTPLHIAAHYGNINVATLLLNRAAAV-DFTARNDITPLHVASKRGN- 280

Query: 197 VVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLH 256
             M K+L  +   I+   +    PLH  A  GH ++   L D    +   +  NG SPLH
Sbjct: 281 ANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRAAPI-LSKTKNGLSPLH 339

Query: 257 LASENGKLSLLKRLL-HSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMI 314
           +A++   L+ ++ LL H+ P  ++ +       LH+AA  GH  V  V + K    +   
Sbjct: 340 MATQGDHLNCVQLLLQHNVP--VDDVTNDYLTALHVAAHCGHYKVAKVLLDK----KANP 393

Query: 315 NSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDI--L 372
           N+  L G TPLH+A   N   ++ +L ++   +I+A  E   T + +     H N +  L
Sbjct: 394 NAKALNGFTPLHIACKKNRIKVMELLLKH-GASIQAVTESGLTPIHVAAFMGHVNIVSQL 452

Query: 373 EGHGGSASGT 382
             HG S + T
Sbjct: 453 MHHGASPNTT 462

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|G0LXV8|LATA_LATHA Alpha-latrotoxin-Lh1a (Fragment) OS=Latrodectus hasseltii PE=1 SV=2

 Score = 94.0 bits (232), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 178/394 (45%), Gaps = 58/394 (14%)

Query: 4   VARVLFRALRRGDAAT-VRESARLNGNG--ILDMSQNRDTALHIAARFGHKNVVMEILEL 60
           + R L+      D+A   +E  +LN +G  I    +   T  H AA+ G+  +++ +  L
Sbjct: 442 IDRDLYNTANNPDSAVGFKEFTKLNYDGANIRATFEQGRTVFHAAAKSGNSRIMIGLTFL 501

Query: 61  -RPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPL 119
            + + ++  + K  TP+HVAA +GN G+  + ++  G   N+ T++ +         TPL
Sbjct: 502 VKSNELNQPDKKGYTPIHVAADSGNAGIVNLLIQ-RGVSINSKTYNFL--------QTPL 552

Query: 120 HNAVRKCDGKMAFTMIRKDPEL-ICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDH 178
           H A ++      F  + + PE+ I   +K G +PL  A+  G   +   I + ++  L+ 
Sbjct: 553 HLAAQRG-FVTTFQRLMESPEININERDKDGFTPLHYAVRGGERILEAFINQIRID-LNA 610

Query: 179 RGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSD 238
           +    LT  H+AIIK ++ V + +L +K+  +N +D+ +   LHYAA LG+ E   +L +
Sbjct: 611 KSNKGLTPFHLAIIKDDWPVASTLLGSKKVDVNAVDENNMTALHYAAILGYLETTKQLIN 670

Query: 239 -------------------------EDDTLAY-ERDCN---------GQSPLHLASENGK 263
                                     DD  ++  R  N         G +PLHLA   G+
Sbjct: 671 LKEINADVVSSPGLLSALHYAILYKHDDVASFLLRSSNVNVNLKALGGITPLHLAVIQGR 730

Query: 264 LSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGN 322
             +L  L+     +IE    +    LHLAA + +  ++ + + +    E   NS    G 
Sbjct: 731 TQILS-LMFDIGVNIEQQTDEKYTPLHLAAMSKYPELIQILLDQGSNFEAKTNS----GA 785

Query: 323 TPLHLAAINNHFNIVLILARNMRVNIRATNEKKQ 356
           TPLHLA         LIL  N  VN R T+E  Q
Sbjct: 786 TPLHLATFKGKSKAALILLNN-EVNWRDTDENGQ 818

Presynaptic neurotoxin that induces exhaustive neurotransmitter release from vertebrate (but not invertebrate) nerve terminals and endocrine cells. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism (By similarity). Induces rapid muscle contracture and loss of twitch tension when added to the isolated and indirectly stimulated chick biventer cervicis nerve-muscle preparation.

Latrodectus hasseltii (taxid: 256736)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 93.2 bits (230), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 112/424 (26%), Positives = 173/424 (40%), Gaps = 69/424 (16%)

Query: 8   LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSV 67
             RA R G+   V E  +  G  I   +QN   ALH+AA+ GH  +V E+L  R   V  
Sbjct: 35  FLRAARAGNLDKVVEYLK-GGIDINTCNQNGLNALHLAAKEGHVGLVQELLG-RGSSVDS 92

Query: 68  ENHKSETPMHVAARAGNFGVAKIFMRPHGNGN---------------------------- 99
              K  T +H+A+ AG   V K+ ++   N N                            
Sbjct: 93  ATKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVVKYLLEN 152

Query: 100 ----NTGTFDD-----------------ILRKQDEEGNT---PLHNAVRKCDGKMAFTMI 135
               +T T D                  IL + D +G      LH A RK D K A  ++
Sbjct: 153 GANQSTATEDGFTPLAVALQQGHNQAVAILLENDTKGKVRLPALHIAARKDDTKSAALLL 212

Query: 136 RKDPE-------LICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLH 188
           + D         ++    ++G +PL +A   G  ++A  ++    +V D    N +T LH
Sbjct: 213 QNDHNADVQSKMMVNRTTESGFTPLHIAAHYGNVNVATLLLNRGAAV-DFTARNGITPLH 271

Query: 189 IAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERD 248
           +A  + N   M K+L  +   I+   +    PLH AA  GH ++   L +    L   R 
Sbjct: 272 VASKRGN-TNMVKLLLDRGGQIDAKTRDGLTPLHCAARSGHDQVVELLLERKAPL-LART 329

Query: 249 CNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLP 308
            NG SPLH+A++   +  +K LL  Y   ++ +       LH+AA  GH  V      L 
Sbjct: 330 KNGLSPLHMAAQGDHVECVKHLLQ-YKAPVDDVTLDYLTALHVAAHCGHYRVTKL---LL 385

Query: 309 EIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQ 368
           +     N+  L G TPLH+A   N   ++ +L +    +I+A  E   T + +     H 
Sbjct: 386 DKRANPNARALNGFTPLHIACKKNRIKVMELLVK-YGASIQAITESGLTPIHVAAFMGHL 444

Query: 369 NDIL 372
           N +L
Sbjct: 445 NIVL 448

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 92.4 bits (228), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 115/425 (27%), Positives = 173/425 (40%), Gaps = 71/425 (16%)

Query: 8   LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSV 67
             RA R G+   V E  +  G  I   +QN   ALH+AA+ GH  +V E+L  R   V  
Sbjct: 35  FLRAARAGNLDKVVEYLK-GGIDINTCNQNGLNALHLAAKEGHVGLVQELLG-RGSSVDS 92

Query: 68  ENHKSETPMHVAARAGNFGVAKIFMRPHGNGN---------------------------- 99
              K  T +H+A+ AG   V K+ ++   N N                            
Sbjct: 93  ATKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVVKYLLEN 152

Query: 100 ----NTGTFDD-----------------ILRKQDEEGNT---PLHNAVRKCDGKMAFTMI 135
               +T T D                  IL + D +G      LH A RK D K A  ++
Sbjct: 153 GANQSTATEDGFTPLAVALQQGHNQAVAILLENDTKGKVRLPALHIAARKDDTKSAALLL 212

Query: 136 RKDPE-------LICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLH 188
           + D         ++    ++G +PL +A   G  ++A  ++    +V D    N +T LH
Sbjct: 213 QNDHNADVQSKMMVNRTTESGFTPLHIAAHYGNVNVATLLLNRGAAV-DFTARNGITPLH 271

Query: 189 IAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERD 248
           +A  + N   M K+L  +   I+   +    PLH AA  GH ++   L +    L   R 
Sbjct: 272 VASKRGN-TNMVKLLLDRGGQIDAKTRDGLTPLHCAARSGHDQVVELLLERGAPL-LART 329

Query: 249 CNGQSPLHLASENGKLSLLKRLL-HSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
            NG SPLH+A++   +  +K LL H  P     LD      LH+AA  GH  V      L
Sbjct: 330 KNGLSPLHMAAQGDHVECVKHLLQHKAPVDDVTLDY--LTALHVAAHCGHYRVTKL---L 384

Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLH 367
            +     N+  L G TPLH+A   N   ++ +L +    +I+A  E   T + +     H
Sbjct: 385 LDKRANPNARALNGFTPLHIACKKNRIKVMELLVK-YGASIQAITESGLTPIHVAAFMGH 443

Query: 368 QNDIL 372
            N +L
Sbjct: 444 LNIVL 448

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 91.7 bits (226), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 159/344 (46%), Gaps = 33/344 (9%)

Query: 39  DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNG 98
           +TALHIAA  G   VV E++    + V+ ++ K  TP+++AA+  +  V K F+  +G  
Sbjct: 79  NTALHIAALAGQDEVVRELVNYGAN-VNAQSQKGFTPLYMAAQENHLEVVK-FLLENGAN 136

Query: 99  NNTGTFDD-----ILRKQDEEGNTP---------------LHNAVRKCDGKMAFTMIRKD 138
            N  T D      +  +Q  E                   LH A R  D + A  +++ D
Sbjct: 137 QNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAAVLLQND 196

Query: 139 PELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVV 198
           P     ++K G +PL +A      ++A  ++    SV +    N +T LHIA  + N V+
Sbjct: 197 PNPDV-LSKTGFTPLHIAAHYENLNVAQLLLNRGASV-NFTPQNGITPLHIASRRGN-VI 253

Query: 199 MAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLA 258
           M ++L  +   I    K +  PLH AA  GH  I+  L D    +   +  NG SP+H+A
Sbjct: 254 MVRLLLDRGAQIETKTKDELTPLHCAARNGHVRISEILLDHGAPIQA-KTKNGLSPIHMA 312

Query: 259 SENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSS 317
           ++   L  + RLL  Y   I+ +   +   LH+AA  GH  V  V + K  +     NS 
Sbjct: 313 AQGDHLDCV-RLLLQYDAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKP----NSR 367

Query: 318 DLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
            L G TPLH+A   NH  ++ +L +    +I A  E   T L +
Sbjct: 368 ALNGFTPLHIACKKNHVRVMELLLKT-GASIDAVTESGLTPLHV 410

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 91.3 bits (225), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 159/344 (46%), Gaps = 33/344 (9%)

Query: 39  DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNG 98
           +TALHIAA  G   VV E++    + V+ ++ K  TP+++AA+  +  V K F+  +G  
Sbjct: 75  NTALHIAALAGQDEVVRELVNYGAN-VNAQSQKGFTPLYMAAQENHLEVVK-FLLENGAN 132

Query: 99  NNTGTFDD-----ILRKQDEEGNTP---------------LHNAVRKCDGKMAFTMIRKD 138
            N  T D      +  +Q  E                   LH A R  D + A  +++ D
Sbjct: 133 QNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAAVLLQND 192

Query: 139 PELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVV 198
           P     ++K G +PL +A      ++A  ++    SV +    N +T LHIA  + N V+
Sbjct: 193 PNPDV-LSKTGFTPLHIAAHYENLNVAQLLLNRGASV-NFTPQNGITPLHIASRRGN-VI 249

Query: 199 MAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLA 258
           M ++L  +   I    K +  PLH AA  GH  I+  L D    +   +  NG SP+H+A
Sbjct: 250 MVRLLLDRGAQIETRTKDELTPLHCAARNGHVRISEILLDHGAPIQA-KTKNGLSPIHMA 308

Query: 259 SENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSS 317
           ++   L  + RLL  Y   I+ +   +   LH+AA  GH  V  V + K  +     NS 
Sbjct: 309 AQGDHLDCV-RLLLQYNAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKP----NSR 363

Query: 318 DLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
            L G TPLH+A   NH  ++ +L +    +I A  E   T L +
Sbjct: 364 ALNGFTPLHIACKKNHIRVMELLLKTG-ASIDAVTESGLTPLHV 406

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|P23631|LATA_LATTR Alpha-latrotoxin-Lt1a OS=Latrodectus tredecimguttatus PE=1 SV=2

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 176/394 (44%), Gaps = 58/394 (14%)

Query: 4   VARVLFRALRRGDAAT-VRESARLNGNG--ILDMSQNRDTALHIAARFGHKNVVMEILEL 60
           + R L+ A    D+A   +E  +LN +G  I     +  T  H AA+ G+  ++  +  L
Sbjct: 454 IDRDLYNAASNPDSAVGFKEFTKLNYDGANIRATFDHGRTVFHAAAKSGNDKIMFGLTFL 513

Query: 61  -RPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPL 119
            +   ++  + K  TP+HVAA +GN G+  + ++  G   N+ T+  +         TPL
Sbjct: 514 AKSTELNQPDKKGYTPIHVAADSGNAGIVNLLIQ-RGVSINSKTYHFL--------QTPL 564

Query: 120 HNAVRKCDGKMAFTMIRKDPEL-ICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDH 178
           H A ++      F  + + PE+ I   +K G +PL  AI  G   +   + +  + V + 
Sbjct: 565 HLAAQRG-FVTTFQRLMESPEININERDKDGFTPLHYAIRGGERILEAFLNQISIDV-NA 622

Query: 179 RGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSD 238
           +    LT  H+AIIK+++ V + +L +K+  IN +D+ +   LHYAA LG+ E   +L +
Sbjct: 623 KSNTGLTPFHLAIIKNDWPVASTLLGSKKVDINAVDENNITALHYAAILGYLETTKQLIN 682

Query: 239 -------------------------EDDTLAY-ERDCN---------GQSPLHLASENGK 263
                                     DD  ++  R  N         G +PLHLA   G+
Sbjct: 683 LKEINANVVSSPGLLSALHYAILYKHDDVASFLMRSSNVNVNLKALGGITPLHLAVIQGR 742

Query: 264 LSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGN 322
             +L  L+     +IE    +    LHLAA + +  ++ + + +    E   NS    G 
Sbjct: 743 KQILS-LMFDIGVNIEQKTDEKYTPLHLAAMSKYPELIQILLDQGSNFEAKTNS----GA 797

Query: 323 TPLHLAAINNHFNIVLILARNMRVNIRATNEKKQ 356
           TPLHLA         LIL  N  VN R T+E  Q
Sbjct: 798 TPLHLATFKGKSQAALILLNN-EVNWRDTDENGQ 830

Presynaptic neurotoxin that induces exhaustive neurotransmitter release from vertebrate (but not invertebrate) nerve terminals and endocrine cells. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 178/410 (43%), Gaps = 30/410 (7%)

Query: 73  ETPMHVAARAGNFGVAKIFMR---PHGNGNNTGT-FD--------DILRKQDEEGNTPLH 120
           +T +H+AA+ G+    +  ++       G  +G  FD         I+ + +E G T L 
Sbjct: 75  DTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRASIVNEVNELGETALF 134

Query: 121 NAVRKCDGKMAFTMIRKDP-ELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHR 179
            A  K    +   +++    E I   N++G  PL +A   G   I   ++    ++    
Sbjct: 135 TAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVEVLLDHDATLSQTF 194

Query: 180 GPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDE 239
           GP++ T L  A ++ +  V+ ++L    +L+ +    ++N LH AA  GH E+   L  +
Sbjct: 195 GPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAARQGHVEVIKALLSK 254

Query: 240 DDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHAN 299
           D  LA   D  GQ+ LH+A +     ++K LL + P  +   DK     LH+A +   A 
Sbjct: 255 DPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCNTALHVATRKKRAE 314

Query: 300 VVVFISKLPE------IEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNE 353
           +V  +  LP+        D   + D+    PL          I   LAR+  +     N+
Sbjct: 315 IVELLLSLPDTNANTLTRDHKTALDIAEGLPLS----EESSYIKECLARSGALRANELNQ 370

Query: 354 KKQTALAIVQPSLHQNDI---LEGHGGSASGTGTTTTDLIAGPKN--EDMAQNLLVMATL 408
            +    + V  +  +ND+   LE    +       + +L    +    +   ++ V+A L
Sbjct: 371 PRDELRSTV--TQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVL 428

Query: 409 VATLTFTSAFTIPGGYNDKGVPIFDTNLVFKAFVLTDTIAMTTSLTAAVL 458
            AT+ F + FT+PGG N+ G  +      FK F + + +A+ TSL   V+
Sbjct: 429 FATVAFAAIFTVPGGDNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVV 478

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 151/368 (41%), Gaps = 50/368 (13%)

Query: 139 PELICYINKAGQSPLSLAIDAGLTHIACCIIK-EKLSVLDHRGPNDLTLLHIAIIKSNFV 197
            EL+   N AG++ + ++    L  I   +I+   L  +  R  +D+   H+A  + +  
Sbjct: 49  AELMSVQNDAGETAVYISAAENLEDIFRYLIRFSSLETVKIRSKSDMNAFHVAAKRGHLG 108

Query: 198 VMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHL 257
           ++ ++L    +L  + D  + +PL+ AA   H EI   + D D + A     NG++ LH 
Sbjct: 109 IVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGKTSLHT 168

Query: 258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSS 317
           A   G L ++K L+      +   DKK +  LH+A +     VV  I  L     ++N  
Sbjct: 169 AGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEI--LQADYTILNER 226

Query: 318 DLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDILE---- 373
           D +GNT LH+A       I  +L     + + A N +K+TA+ +     +    LE    
Sbjct: 227 DRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEA 286

Query: 374 ------------GHGGSASGTGTTTTDL-----------------IAGPKNE------DM 398
                       G    A       +D+                 ++G   E      + 
Sbjct: 287 LVEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKLHREA 346

Query: 399 AQN----LLVMATLVATLTFTSAFTIPGGYNDKGVPIFDTNLV----FKAFVLTDTIAMT 450
            QN    + V+A L A++ F + F +PG Y  +G  +   N+     F+ F L +  ++ 
Sbjct: 347 VQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQANIAGRTGFRVFCLLNATSLF 406

Query: 451 TSLTAAVL 458
            SL   V+
Sbjct: 407 ISLAVVVV 414

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	464
302143222	617	unnamed protein product [Vitis vinifera]	0.987	0.742	0.353	2e-67
224117420	577	predicted protein [Populus trichocarpa]	0.963	0.774	0.352	2e-66
224109440	577	predicted protein [Populus trichocarpa]	0.971	0.781	0.351	2e-66
225446910	777	PREDICTED: ankyrin repeat-containing pro	0.907	0.541	0.349	1e-62
297739103	647	unnamed protein product [Vitis vinifera]	0.907	0.650	0.349	2e-62
225446912	996	PREDICTED: uncharacterized protein LOC10	0.898	0.418	0.369	6e-62
359485365	781	PREDICTED: ankyrin repeat-containing pro	0.896	0.532	0.348	6e-61
225446312	677	PREDICTED: ankyrin repeat-containing pro	0.935	0.641	0.358	7e-61
302143268	1343	unnamed protein product [Vitis vinifera]	0.935	0.323	0.358	1e-60
359485593	756	PREDICTED: ankyrin repeat-containing pro	0.900	0.552	0.340	3e-59

>gi|302143222|emb|CBI20517.3| unnamed protein product [Vitis vinifera]

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 182/515 (35%), Positives = 270/515 (52%), Gaps = 57/515 (11%)

Query: 2   STVARVLFRALRRGDAATVR--ESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEIL- 58
           S V  +L + + +  A  V   E + LN +   D S  ++TALHIAAR G+K +V  +L 
Sbjct: 7   SVVFDILIQRVHQAIAVAVDHDEISNLNLHVGFDSSHRKNTALHIAARVGNKKMVEALLS 66

Query: 59  ELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNT--GTFDDILRKQDEEGN 116
           E  P  +  EN K ETP+H+AAR+G+  V K  +       +   G    +LR ++ EGN
Sbjct: 67  EGTPASLLTENSKHETPLHIAARSGHVHVVKFLIDWATQSTDVEAGGIQQVLRMRNMEGN 126

Query: 117 TPLHNAVRKCDGKMAFTMIR-KDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEK--L 173
           TPLH AVR         ++   D +L+  +N AG+SPL +A+D   + I   I+      
Sbjct: 127 TPLHEAVRNGHHSTVLVLVEANDSDLLVSLNNAGESPLFMAVDVRASEIVKTILPNSNPY 186

Query: 174 SVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIA 233
           S+L HR  +  T+LH AI++++   M  I++   +L+N  D   R+PLHYAAA G   + 
Sbjct: 187 SLL-HRSSDGQTILHRAILRADLKTMKIIIQHMPELVNEKDSCGRSPLHYAAASGALALV 245

Query: 234 CRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAA 293
             L     +     D N  +P H+A+ENG L++LK  +      +E L+  ++NILH+AA
Sbjct: 246 DHLLQLKPSNGSFLDNNLATPAHMAAENGHLNVLKLFVKRCRYWVELLNNHHQNILHVAA 305

Query: 294 QNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNE 353
           QNGH  VV +I  +  + D++N +D +GNTPLHLAA   H +IV  L +   ++  A N+
Sbjct: 306 QNGHLKVVRYIQNMFMVNDLLNETDEDGNTPLHLAAAKLHSSIVSTLVQTGNMDTTAINK 365

Query: 354 KKQTALAI------VQPSLHQNDILEGHGGSAS--GTGTTTTDLIAGPKN---------- 395
           K +T L I      V PS   N+  +G+   A+   TG    + I   K           
Sbjct: 366 KGETVLDIARKFQLVSPSNEGNEGTDGNQAQATPNKTGCAGDEKIEAKKQRTIEILKAAS 425

Query: 396 --------------------------EDMAQNLLVMATLVATLTFTSAFTIPGGYND--- 426
                                     ++MA  L+VMATLVAT+TFT+AFT+PGG      
Sbjct: 426 AKQAKKLEGILEQEDLIIESIRDKRRKEMAGTLIVMATLVATVTFTAAFTLPGGIQSEGP 485

Query: 427 -KGVPIFDTNLVFKAFVLTDTIAMTTSLTAAVLTF 460
            +G+ +      FKAF++TDT+AMTTS+TAAV+ F
Sbjct: 486 HQGMAVLTRKAAFKAFIVTDTVAMTTSMTAAVILF 520

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117420|ref|XP_002317570.1| predicted protein [Populus trichocarpa] gi|222860635|gb|EEE98182.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 171/485 (35%), Positives = 260/485 (53%), Gaps = 38/485 (7%)

Query: 8   LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSV 67
           L+R  + G+   + +    N   +  ++   +T LHIA +FGHK VV+EI      L++ 
Sbjct: 5   LYRVAKSGNVYILLQLLNENPRLLTKLTPQGNTPLHIAVQFGHKGVVVEIYNRCRSLLTR 64

Query: 68  ENHKSETPMHVAARAGNFGVAKIFM-------RPHGNGNNTGTFDDILRKQDEEGNTPLH 120
            N   ++P+HVAAR G+F +    +       R       TG FD ILR+ + E NT LH
Sbjct: 65  PNSSGDSPLHVAARCGHFSIVDFLVKENLSAKRISTENGKTGKFD-ILRQGNNENNTVLH 123

Query: 121 NAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRG 180
            AVR  +  +   ++R D +L C+ N AG+SPL LA   G   I   I+    +   H G
Sbjct: 124 EAVRNGNMSVVKLLLRVDTKLACFENYAGESPLFLAAREGKKDILNQILISTPAS-AHGG 182

Query: 181 PNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDED 240
               T LH A+I+ +  +M  +L AK  LI   D   R  LH+AA+LG      RL + D
Sbjct: 183 SEGQTALHAAVIERHSDIMEILLRAKPHLITEADHHGRTALHHAASLGDRRAVERLLEFD 242

Query: 241 DTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANV 300
           +  AY  D NG SPLH+A+ NG   +++R++H  PDS E LD   R++LH A  +G  NV
Sbjct: 243 ECTAYVLDKNGHSPLHVAASNGHADVIERIIHYCPDSGELLDLNGRSVLHFAVLSGKVNV 302

Query: 301 VVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALA 360
           V  + ++ E++ +IN +D  GNTPLHLAAI     I+  L  + RV+ RA NE  Q+   
Sbjct: 303 VRCVVEIAELQWLINQADNGGNTPLHLAAIERQTRILRCLIWDERVDHRARNETGQSVFD 362

Query: 361 I---VQPS--LHQNDILEGHGGSASGTGTTTTDLIAGPKN---------------EDMAQ 400
           I   ++ S  +++ +I+E             ++ I G KN               + M  
Sbjct: 363 IDGSIRESCFIYRCNIIE----CVWRKLIPVSNGIIGKKNPPCADQEAIARIQTYKRMGN 418

Query: 401 NLLVMATLVATLTFTSAFTIPGGYND-----KGVPIFDTNLVFKAFVLTDTIAMTTSLTA 455
            LL++ATL+AT+TF +AFT+PGG+N+     +GV + +++   + FV +D+IAMT+S+ A
Sbjct: 419 TLLMVATLIATVTFAAAFTLPGGFNNDLGLKQGVALLESSKHLRWFVFSDSIAMTSSIIA 478

Query: 456 AVLTF 460
           A + F
Sbjct: 479 ACIIF 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109440|ref|XP_002333254.1| predicted protein [Populus trichocarpa] gi|222835818|gb|EEE74253.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 169/481 (35%), Positives = 259/481 (53%), Gaps = 30/481 (6%)

Query: 8   LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSV 67
           L+R  + G+   + +    N   +  ++   +T LHIA +FGHK VV+EI      L++ 
Sbjct: 5   LYRVAKSGNVYILLQLLNENPRLLTKLTPQGNTPLHIAVQFGHKGVVVEIYNRCGSLLTR 64

Query: 68  ENHKSETPMHVAARAGNFGVAKIFM-------RPHGNGNNTGTFDDILRKQDEEGNTPLH 120
            N   ++P+HVAAR G+F +    +       R       TG FD ILR+ + E NT LH
Sbjct: 65  PNSSGDSPLHVAARCGHFSIVDFLVKEILAAKRISTENGKTGKFD-ILRQGNNENNTVLH 123

Query: 121 NAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRG 180
            AVR  +  +   ++R D +L C+ N AG+SPL LA   G  ++   I+    +   H G
Sbjct: 124 EAVRNGNMSVVKLLLRVDTKLACFENYAGESPLFLAAREGKKNLLNQILISTPAS-AHGG 182

Query: 181 PNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDED 240
               T LH A+I+ +  +M  +L AK  LI   D   R  LH+AA+LG      RL + D
Sbjct: 183 SEGQTALHAAVIERHSDIMEILLRAKPHLITEADHHGRTALHHAASLGDRRAVERLLEFD 242

Query: 241 DTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANV 300
           +  AY  D NG SPLH+A+ NG   +++R++H  PDS E LD   R++LH A  +G  NV
Sbjct: 243 ECTAYVLDKNGHSPLHVAASNGHADVIERIIHYCPDSGELLDLNGRSVLHFAVLSGKVNV 302

Query: 301 VVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALA 360
           V  + ++ E++ +IN +D  GNTPLHLAAI     I+  L  + RV+ RA NE  Q+   
Sbjct: 303 VRCVVEIAELQWLINQADNGGNTPLHLAAIERQTRILRCLIWDERVDHRARNETGQSVFD 362

Query: 361 I---VQPS--LHQNDILE-----------GHGGSASGTGTTTTDLIAGPKNEDMAQNLLV 404
           I   ++ S  +++ +I+E           G  G  +   T    +      + M   LL+
Sbjct: 363 IDGSIRESCFIYRCNIIECVWRKLIPVSNGIIGKKNPPCTDQEAIARIQTYKRMGNTLLM 422

Query: 405 MATLVATLTFTSAFTIPGGYND-----KGVPIFDTNLVFKAFVLTDTIAMTTSLTAAVLT 459
           +ATL+AT+TF +AFT+PGG+N+     +GV + +++   + FV +D IAMT+S+ AA + 
Sbjct: 423 VATLIATVTFAAAFTLPGGFNNDLGLKQGVALLESSKHLRWFVFSDAIAMTSSIIAACII 482

Query: 460 F 460
           F
Sbjct: 483 F 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446910|ref|XP_002266647.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 161/461 (34%), Positives = 253/461 (54%), Gaps = 40/461 (8%)

Query: 31  ILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKI 90
           +  +S  ++T LHIAA FGH ++   I++  PDL+  +N K +T +H+AAR  N    KI
Sbjct: 219 LCQVSPRKNTCLHIAASFGHHDLAKYIVKECPDLIKNKNSKGDTALHIAARKRNLSFVKI 278

Query: 91  FMRPHGNGNNTGTFDDILRKQ-------DEEGNTPLHNA-VRKC-DGKMAFTMIRKDPEL 141
            M    +G  +G   D+ + +       ++EGNT LH A + +C   ++   +I+ DP++
Sbjct: 279 VMDSCPSG--SGASQDVEKAEPSLLGIVNKEGNTVLHEALINRCKQEEVVEILIKTDPQV 336

Query: 142 ICYINKAGQSPLSLAIDAGLTHIACCI----IKEKLSVLDHRGPNDLTLLHIAIIKSNFV 197
             Y NK G+SPL LA ++   H+   I    ++E++   D +       +H AI+  N  
Sbjct: 337 AYYPNKEGKSPLYLAAESHYFHVVEAIGNSEVEERMKNRDRKAK---PAVHGAIMGKNKE 393

Query: 198 VMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHL 257
           ++ KIL  K  L++  D+  R PLH AA++G+ E    L D+ +   Y+ D +G  P+H+
Sbjct: 394 MLEKILAMK--LVHQKDEDGRTPLHCAASIGYLEGVQMLLDQSNLDPYQMDSDGFCPIHV 451

Query: 258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSS 317
           AS  G + ++K+LL    DSIE L K+ +NILH+AA+ G  NVV F+ K   +E+ IN  
Sbjct: 452 ASMRGNVDIVKKLLQVSSDSIELLSKRGQNILHVAAKYGKDNVVNFVLKEERLENFINEK 511

Query: 318 DLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIV-----QPSLHQNDI- 371
           D  GNTPLHLA ++ H  +V  L  + RV++   N++ QTAL IV      P+ HQ  I 
Sbjct: 512 DKGGNTPLHLATMHRHPKVVSSLTWDKRVDVNLVNDRGQTALNIVLPVKHPPTFHQALIW 571

Query: 372 --LEGHGGSASGTG--------TTTTDLIAGPKNEDMAQNLLVMATLVATLTFTSAFTIP 421
             L+  G   +G             ++     K +D    LL+++TLVAT+TF + FT+P
Sbjct: 572 TALKSAGARPAGNSKFPPNRRCKQYSESPKMDKYKDRVNTLLLVSTLVATVTFAAGFTMP 631

Query: 422 GGYNDK----GVPIFDTNLVFKAFVLTDTIAMTTSLTAAVL 458
           GGYN      G+       +F+ FV+ +T AM TS+ AA++
Sbjct: 632 GGYNSSDPNVGMAALLMRNMFQMFVICNTTAMYTSILAAII 672

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739103|emb|CBI28754.3| unnamed protein product [Vitis vinifera]

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 161/461 (34%), Positives = 253/461 (54%), Gaps = 40/461 (8%)

Query: 31  ILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKI 90
           +  +S  ++T LHIAA FGH ++   I++  PDL+  +N K +T +H+AAR  N    KI
Sbjct: 89  LCQVSPRKNTCLHIAASFGHHDLAKYIVKECPDLIKNKNSKGDTALHIAARKRNLSFVKI 148

Query: 91  FMRPHGNGNNTGTFDDILRKQ-------DEEGNTPLHNA-VRKC-DGKMAFTMIRKDPEL 141
            M    +G  +G   D+ + +       ++EGNT LH A + +C   ++   +I+ DP++
Sbjct: 149 VMDSCPSG--SGASQDVEKAEPSLLGIVNKEGNTVLHEALINRCKQEEVVEILIKTDPQV 206

Query: 142 ICYINKAGQSPLSLAIDAGLTHIACCI----IKEKLSVLDHRGPNDLTLLHIAIIKSNFV 197
             Y NK G+SPL LA ++   H+   I    ++E++   D +       +H AI+  N  
Sbjct: 207 AYYPNKEGKSPLYLAAESHYFHVVEAIGNSEVEERMKNRDRKAK---PAVHGAIMGKNKE 263

Query: 198 VMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHL 257
           ++ KIL  K  L++  D+  R PLH AA++G+ E    L D+ +   Y+ D +G  P+H+
Sbjct: 264 MLEKILAMK--LVHQKDEDGRTPLHCAASIGYLEGVQMLLDQSNLDPYQMDSDGFCPIHV 321

Query: 258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSS 317
           AS  G + ++K+LL    DSIE L K+ +NILH+AA+ G  NVV F+ K   +E+ IN  
Sbjct: 322 ASMRGNVDIVKKLLQVSSDSIELLSKRGQNILHVAAKYGKDNVVNFVLKEERLENFINEK 381

Query: 318 DLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIV-----QPSLHQNDI- 371
           D  GNTPLHLA ++ H  +V  L  + RV++   N++ QTAL IV      P+ HQ  I 
Sbjct: 382 DKGGNTPLHLATMHRHPKVVSSLTWDKRVDVNLVNDRGQTALNIVLPVKHPPTFHQALIW 441

Query: 372 --LEGHGGSASGTG--------TTTTDLIAGPKNEDMAQNLLVMATLVATLTFTSAFTIP 421
             L+  G   +G             ++     K +D    LL+++TLVAT+TF + FT+P
Sbjct: 442 TALKSAGARPAGNSKFPPNRRCKQYSESPKMDKYKDRVNTLLLVSTLVATVTFAAGFTMP 501

Query: 422 GGYNDK----GVPIFDTNLVFKAFVLTDTIAMTTSLTAAVL 458
           GGYN      G+       +F+ FV+ +T AM TS+ AA++
Sbjct: 502 GGYNSSDPNVGMAALLMRNMFQMFVICNTTAMYTSILAAII 542

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446912|ref|XP_002266690.1| PREDICTED: uncharacterized protein LOC100256773 [Vitis vinifera]

 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 166/449 (36%), Positives = 244/449 (54%), Gaps = 32/449 (7%)

Query: 38  RDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGN 97
           ++T LHIAA FGH ++   I+   PDL+  +N K +T +H+AAR  N    KI M    +
Sbjct: 447 KNTCLHIAASFGHHDLAKYIVRECPDLIKNKNSKGDTALHIAARKRNLSFVKIVMDSCPS 506

Query: 98  GNNTGTFDDILRKQ-------DEEGNTPLHNA-VRKC-DGKMAFTMIRKDPELICYINKA 148
           G  +G   D+ + +       ++EGNT LH A + +C   ++   +I+ DP++  Y NK 
Sbjct: 507 G--SGASQDVEKAEPLLLGIVNKEGNTVLHEALINRCKQEEVVEILIKADPQVAHYPNKE 564

Query: 149 GQSPLSLAIDAGLTHIACCIIKEKLS--VLDHRGPNDLTLLHIAIIKSNFVVMAKILEAK 206
           G+SPL LA +A   H+   I K K+   +  +R     + +H AI+  N  ++ KIL  K
Sbjct: 565 GKSPLFLAAEAHYFHVVEAIGKPKVEKHMSINRDREAKSAVHGAILGKNKEMLEKILALK 624

Query: 207 RDLINVLDKRDRNPLHYAAALGHFEIACRL--SDEDDTLAYERDCNGQSPLHLASENGKL 264
             +++  D+    PLHYAA++G+ E    L   D+ +   Y RD  G  P+H+AS  G +
Sbjct: 625 --IVHQRDEHGMTPLHYAASIGYLEGVQTLLAKDQSNFDRYHRDDEGFLPIHVASMRGYV 682

Query: 265 SLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTP 324
            ++K LL    DSIE L K   NILH+AA+ G  NVV F+ K   +E++IN  D EGNTP
Sbjct: 683 DIVKELLQVSSDSIELLSKHGENILHVAAKYGKDNVVDFLMKKKGLENLINEKDKEGNTP 742

Query: 325 LHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIV-----QPSLHQNDI---LEGHG 376
           LHLA    H  +V  L  + RV++   N + QTA  I        SLHQ  I   L+  G
Sbjct: 743 LHLATTYAHPKVVNYLTWDKRVDVNLVNNEGQTAFDIAVSVEHPTSLHQRLIWTALKSTG 802

Query: 377 GSASGTGTTTTDLIAGP---KNEDMAQNLLVMATLVATLTFTSAFTIPGGYNDK----GV 429
              +G       L   P   + +D    LL+++TLVAT+TF + FT+PGGYN      G+
Sbjct: 803 TRPAGNSKVPPKLPKSPNTDQYKDRVNTLLLVSTLVATVTFAAGFTMPGGYNSSNPSAGM 862

Query: 430 PIFDTNLVFKAFVLTDTIAMTTSLTAAVL 458
            IF    +F  FV+ +TIAM TS+ AA++
Sbjct: 863 AIFLMRNMFHMFVICNTIAMYTSILAAII 891

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485365|ref|XP_003633264.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  241 bits (615), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 161/462 (34%), Positives = 246/462 (53%), Gaps = 46/462 (9%)

Query: 31  ILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKI 90
           +  +S  ++T LHIAA FGH ++   I+   PDL+  +N K +T +H+AAR  N    KI
Sbjct: 227 LCQVSPRKNTCLHIAASFGHHDLAKYIVRECPDLIKNKNSKGDTALHIAARKRNLSFVKI 286

Query: 91  FMRPHGNGNNTGTFDDILRKQ-------DEEGNTPLHNA-VRKC-DGKMAFTMIRKDPEL 141
            M    +G  +G   D+ + +       ++EGNT LH A + +C   ++   +I+ DP++
Sbjct: 287 VMDSFPSG--SGASQDVEKAEPSLLGIVNKEGNTVLHEALINRCKQEEVVEILIKADPQV 344

Query: 142 ICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAK 201
             Y NK G+SPL LA ++   H+   I     S ++ R  N    +H AI+  N  ++ K
Sbjct: 345 AYYPNKEGKSPLYLAAESHYFHVVEAIGN---SEVEERMKNRDRKVHGAIMGKNKEMLEK 401

Query: 202 ILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASEN 261
           IL  K  L++  DK  R PLH AA++G+ E    L D+ +   Y+ D +G  P+H+AS  
Sbjct: 402 ILAMK--LVHQKDKDGRTPLHCAASIGYLEGVQMLLDQSNLDPYQTDSDGFCPIHVASMR 459

Query: 262 GKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEG 321
           G + ++K+LL    DSIE L K+  NILH+AA+ G  NVV F+ K   +E+ IN  D  G
Sbjct: 460 GNVDIVKKLLQVSSDSIELLSKRGENILHVAAKYGKDNVVNFVLKEERLENFINEKDNGG 519

Query: 322 NTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDI--------LE 373
           NTPLHLA ++ H  +V  L  + RV++   N++ QTAL +V    H            L+
Sbjct: 520 NTPLHLATMHRHPKVVSSLTWDKRVDVNLVNDRGQTALDVVLSVKHPTTFDQALIWTALK 579

Query: 374 GHGGSASG-------------TGTTTTDLIAGPKNEDMAQNLLVMATLVATLTFTSAFTI 420
             G   +G             + +  TD     K +D    LL+++TLVAT+TF + FT+
Sbjct: 580 SAGARPAGNSKFPPNRRRKQYSESPNTD-----KYKDRVNTLLLVSTLVATVTFAAGFTM 634

Query: 421 PGGYNDK----GVPIFDTNLVFKAFVLTDTIAMTTSLTAAVL 458
           PGGYN      G+       +F  FV+ +T AM TS+ AA++
Sbjct: 635 PGGYNSSDPNVGMAALLMRNMFHMFVICNTTAMYTSILAAII 676

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446312|ref|XP_002273435.1| PREDICTED: ankyrin repeat-containing protein At3g12360 [Vitis vinifera]

 Score =  241 bits (614), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 168/469 (35%), Positives = 250/469 (53%), Gaps = 35/469 (7%)

Query: 19  TVRESARLNGNGIL-DMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMH 77
           ++    +L  + IL  +S   +T LHIA  FGH  +   I+ L PDL+ + N K +T +H
Sbjct: 110 SISSEKKLQLSEILSQVSPQNNTCLHIAVSFGHHELAEYIVGLCPDLIKMTNSKGDTALH 169

Query: 78  VAARAGNFGVAKIFMRPHGNGNNTGTFDDI-------LRKQDEEGNTPLHNA-VRKC-DG 128
           +AAR  +    K  M    +G  +G   D+       LR  ++EGNT LH A + +C   
Sbjct: 170 IAARKKDLSFVKFGMDSCLSG--SGASRDVEQAEHSLLRIVNKEGNTVLHEALINRCKQE 227

Query: 129 KMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDH----RGPNDL 184
           ++   +I+ DP++    NK G+SPL LA +A   H+   I K K  V +H    R     
Sbjct: 228 EVVEILIKADPQVAYDPNKEGKSPLYLAAEAHYFHVVEAIGKSK--VEEHMNINRDREAK 285

Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLA 244
             +H AI+  +  ++ KIL  K  L++  D++ R PLHYAA++G+ E    L D+ +   
Sbjct: 286 PAVHGAILGKSKEMLEKILALK--LVHQKDEQGRTPLHYAASIGYLEGVQMLLDQSNFDR 343

Query: 245 YERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI 304
           Y+RD  G  P+H+AS  G + ++K LL    DSIE L K   NILH+AA+ G  NVV F+
Sbjct: 344 YQRDDEGFLPIHIASMRGYVDIVKELLQISSDSIELLSKHGENILHVAAKYGKDNVVDFV 403

Query: 305 SKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIV-- 362
            K   +E++IN  D  GNTPLHLA  + H  +V  L  + RV++   N + QTA  I   
Sbjct: 404 LKKKGVENLINEKDKGGNTPLHLATRHAHPKVVNYLTWDKRVDVNLVNNEGQTAFDIAVS 463

Query: 363 ---QPSLHQNDI---LEGHGGSASGTGTTTTDLIAGP---KNEDMAQNLLVMATLVATLT 413
                S HQ  +   L+ +G   +G           P   + +D    LL+++TLVAT+T
Sbjct: 464 VEHPTSFHQRLVWTALKSYGARPAGNSKVPPKPSKSPNTDEYKDRVNTLLLVSTLVATVT 523

Query: 414 FTSAFTIPGGYNDK----GVPIFDTNLVFKAFVLTDTIAMTTSLTAAVL 458
           F + FTIPGGYN      G+ IF    +F  FV+ +TIAM T++ AA++
Sbjct: 524 FAAGFTIPGGYNSSDPGAGLAIFLMRNMFHMFVICNTIAMYTAILAAII 572

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143268|emb|CBI21829.3| unnamed protein product [Vitis vinifera]

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 168/469 (35%), Positives = 250/469 (53%), Gaps = 35/469 (7%)

Query: 19   TVRESARLNGNGIL-DMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMH 77
            ++    +L  + IL  +S   +T LHIA  FGH  +   I+ L PDL+ + N K +T +H
Sbjct: 776  SISSEKKLQLSEILSQVSPQNNTCLHIAVSFGHHELAEYIVGLCPDLIKMTNSKGDTALH 835

Query: 78   VAARAGNFGVAKIFMRPHGNGNNTGTFDDI-------LRKQDEEGNTPLHNA-VRKC-DG 128
            +AAR  +    K  M    +G  +G   D+       LR  ++EGNT LH A + +C   
Sbjct: 836  IAARKKDLSFVKFGMDSCLSG--SGASRDVEQAEHSLLRIVNKEGNTVLHEALINRCKQE 893

Query: 129  KMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDH----RGPNDL 184
            ++   +I+ DP++    NK G+SPL LA +A   H+   I K K  V +H    R     
Sbjct: 894  EVVEILIKADPQVAYDPNKEGKSPLYLAAEAHYFHVVEAIGKSK--VEEHMNINRDREAK 951

Query: 185  TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLA 244
              +H AI+  +  ++ KIL  K  L++  D++ R PLHYAA++G+ E    L D+ +   
Sbjct: 952  PAVHGAILGKSKEMLEKILALK--LVHQKDEQGRTPLHYAASIGYLEGVQMLLDQSNFDR 1009

Query: 245  YERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI 304
            Y+RD  G  P+H+AS  G + ++K LL    DSIE L K   NILH+AA+ G  NVV F+
Sbjct: 1010 YQRDDEGFLPIHIASMRGYVDIVKELLQISSDSIELLSKHGENILHVAAKYGKDNVVDFV 1069

Query: 305  SKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIV-- 362
             K   +E++IN  D  GNTPLHLA  + H  +V  L  + RV++   N + QTA  I   
Sbjct: 1070 LKKKGVENLINEKDKGGNTPLHLATRHAHPKVVNYLTWDKRVDVNLVNNEGQTAFDIAVS 1129

Query: 363  ---QPSLHQNDI---LEGHGGSASGTGTTTTDLIAGP---KNEDMAQNLLVMATLVATLT 413
                 S HQ  +   L+ +G   +G           P   + +D    LL+++TLVAT+T
Sbjct: 1130 VEHPTSFHQRLVWTALKSYGARPAGNSKVPPKPSKSPNTDEYKDRVNTLLLVSTLVATVT 1189

Query: 414  FTSAFTIPGGYNDK----GVPIFDTNLVFKAFVLTDTIAMTTSLTAAVL 458
            F + FTIPGGYN      G+ IF    +F  FV+ +TIAM T++ AA++
Sbjct: 1190 FAAGFTIPGGYNSSDPGAGLAIFLMRNMFHMFVICNTIAMYTAILAAII 1238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485593|ref|XP_002266894.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 157/461 (34%), Positives = 243/461 (52%), Gaps = 43/461 (9%)

Query: 31  ILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKI 90
           +  +S  ++T LHIAA FGH ++   I+   PDL+  +N K +T +H+AAR  N    KI
Sbjct: 201 LCQVSPRKNTCLHIAASFGHHDLAKYIVRECPDLIKNKNSKGDTALHIAARKRNLSFVKI 260

Query: 91  FMRPHGNGNNTGTFDDILRKQ-------DEEGNTPLHNA-VRKC-DGKMAFTMIRKDPEL 141
            M    +G  +G   D+ + +       ++EGNT LH A + +C   ++   +I+ DP++
Sbjct: 261 VMDSFPSG--SGASQDVEKAEPSLLGIVNKEGNTVLHEALINRCKQEEVVEILIKADPQV 318

Query: 142 ICYINKAGQSPLSLAIDAGLTHIACCI----IKEKLSVLDHRGPNDLTLLHIAIIKSNFV 197
             Y NK G+SPL LA ++   H+   I    ++E++   D +       +H AI+  N  
Sbjct: 319 AYYPNKEGKSPLYLAAESHYFHVVEAIGNSEVEERMKNRDRKA------VHGAIMGKNKE 372

Query: 198 VMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHL 257
           ++ KIL  K  L+   DK  R PLH AA++G+ E    L D+ +   Y+   +G  P+H+
Sbjct: 373 MLEKILAMK--LVQQKDKDGRTPLHCAASIGYLEGVQILLDQSNLDPYQTASDGFCPIHV 430

Query: 258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSS 317
           AS  G + ++K+LL    DSIE L K+  NILH+AA+ G  NVV F+ K   +E+ IN  
Sbjct: 431 ASMRGNVDIVKKLLQVSSDSIELLSKRGENILHVAAKYGKDNVVNFVLKEERLENFINEK 490

Query: 318 DLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDI------ 371
           D  GNTPLHLA ++ H  +V  L  + RV++   N++ QTAL  V    H          
Sbjct: 491 DNGGNTPLHLATMHRHPKVVSSLTWDKRVDVNLVNDRGQTALDAVLSVKHPTTFDQALIW 550

Query: 372 --LEGHGGSASGTG--------TTTTDLIAGPKNEDMAQNLLVMATLVATLTFTSAFTIP 421
             L+  G   +G             ++     K +D    LL+++TLVAT+TF + FT+P
Sbjct: 551 TALKSAGARPAGNSKFPPNRRCKQYSESPKMDKYKDRVNTLLLVSTLVATVTFAAGFTMP 610

Query: 422 GGYNDK----GVPIFDTNLVFKAFVLTDTIAMTTSLTAAVL 458
           GGYN      G+       +F  FV+ +T AM TS+ AA++
Sbjct: 611 GGYNSSDPNVGMAALLMRNMFHMFVICNTTAMYTSILAAII 651

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	464
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.959	0.657	0.284	1.2e-39
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.760	0.573	0.298	1.8e-37
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.780	0.632	0.291	3e-35
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.773	0.560	0.294	6.8e-33
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.743	0.497	0.278	3.1e-31
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.538	0.477	0.325	7.6e-28
TAIR|locus:2129690	670	ACD6 "AT4G14400" [Arabidopsis	0.717	0.497	0.277	1.3e-27
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.743	0.505	0.261	6.3e-25
UNIPROTKB|F1MY81	1136	ANK1 "Uncharacterized protein"	0.687	0.280	0.300	1.7e-22
UNIPROTKB|F1NJR5	1895	Gga.55799 "Uncharacterized pro	0.689	0.168	0.295	3.5e-22

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 1.2e-39, P = 1.2e-39
 Identities = 135/474 (28%), Positives = 218/474 (45%)

Query:    11 ALRRGDAATVRESARLNGN-GILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVEN 69
             A+R GD   +R+  + + N  +  ++ + +T LH+AA  GH ++V  IL   P L+   N
Sbjct:   104 AVRAGDETYLRDM-KFDVNIALSSVNDHGNTMLHLAAAAGHTDLVCYILNAYPGLLMKSN 162

Query:    70 HKSETPMHVAARAGNFGVAKIFMR--PHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCD 127
                E  +HVAA AG+  V +  +      + N  G    I   +D   +  LH ++++  
Sbjct:   163 SMGEVALHVAAGAGHLAVVEALVSFIKDISCNKPGVAKKIYFAKDRHQDNALHVSLKRKH 222

Query:   128 GKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEK------LSVLDHRGP 181
              K+A  ++  +  L    N  G SPL LA++AG   +A  + +         S L  +  
Sbjct:   223 LKVASCLVCAEQSLSFVANNDGVSPLYLAVEAGQADLAKTMWQHSNNGSSSTSTLASK-I 281

Query:   182 NDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDD 241
                +++H A+      ++  IL     LIN  D+  R  L + A+LG++E  C L D+  
Sbjct:   282 GGRSIVHGAMKARRKDILVAILSEDASLINFRDE-GRTCLSFGASLGYYEGFCYLLDKAL 340

Query:   242 TLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV 301
                Y  D +G  P+H+A + G + +LK +L   PD++E LD++N+N+LH+AA+NG   V+
Sbjct:   341 DSVYVSDDDGSFPIHMAVKYGYVKILKAILKRCPDALELLDRENQNVLHVAAKNGKIEVL 400

Query:   302 VFI---SKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTA 358
              FI    K    E +IN  D  GNTPLHLA  N H  +V +L  + RV+++  N    TA
Sbjct:   401 KFILRCCKDKNKEKLINEEDANGNTPLHLATKNWHPKVVSMLTWDNRVDLKTLNHDGVTA 460

Query:   359 LAIVQPSLHQN-DILEXXXXXXXXXXXXXXD--LIA---------GPKNEDMAQNXXXXX 406
             L I + ++  +    E                 LI          G K +D         
Sbjct:   461 LDIAEKNMDSSYTFFERLTWMALISAGAPRGPKLILSTPVTQNSDGGKYKDRVNTLLLVA 520

Query:   407 XXXXXXXXXSAFTIPGGYNDKGVPIFD-TNLVFKAFVLTDTIAMTTSLTAAVLT 459
                      + FT+PGGYN   VP F    L  K       +  T ++  +++T
Sbjct:   521 TLVATMTFTAGFTLPGGYNGS-VPNFGMATLAKKTAFQVFLVFDTLAMYCSIIT 573

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 1.8e-37, P = 1.8e-37
 Identities = 110/368 (29%), Positives = 198/368 (53%)

Query:    11 ALRRGDAATVRESARLNGNGILD--MSQNR-DTALHIAARFGHKNVVMEILELRPDLVSV 67
             A+R GD  ++ +  R+N +  +   +  N+ ++ LHIAA  GH ++V  I+   P+L+  
Sbjct:    44 AVRAGDKVSLLK--RINDDVKVTQRLVDNQGNSILHIAAALGHVHIVEFIISTFPNLLQN 101

Query:    68 ENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCD 127
              N   ET +HVAARAG+  + +I +R       + ++D  +  + + G+T LH A++   
Sbjct:   102 VNLMGETTLHVAARAGSLNIVEILVRFI---TESSSYDAFIAAKSKNGDTALHAALKGKH 158

Query:   128 GKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLS--VLDHRGPNDLT 185
              ++AF ++    ++    N    SPL +A++AG   +   +++   S  +L        +
Sbjct:   159 VEVAFCLVSVKHDVSFDKNNDEASPLYMAVEAGYHELVLKMLESSSSPSILASMFSGK-S 217

Query:   186 LLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFE-IACRLSDED---D 241
             ++H A+  +   ++  +L     LI + ++  R  L Y A++G +E I   L++ D    
Sbjct:   218 VIHAAMKANRRDILGIVLRQDPGLIELRNEEGRTCLSYGASMGCYEGIRYILAEFDKAAS 277

Query:   242 TLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV 301
             +L Y  D +G +P+H+A++ G + ++K  L   PDS E L+ + +NI H+AA  G + VV
Sbjct:   278 SLCYVADDDGFTPIHMAAKEGHVRIIKEFLKHCPDSRELLNNQCQNIFHVAAIAGKSKVV 337

Query:   302 VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
              ++ KL E + M+N  D+ GNTPLHLA  + +  +V +L  N  +N+RA N +  TAL I
Sbjct:   338 KYLLKLDEGKRMMNEQDINGNTPLHLATKHRYPIVVNMLTWNDGINLRALNNEGFTALDI 397

Query:   362 VQPSLHQN 369
              +     N
Sbjct:   398 AETMKDNN 405

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 3.0e-35, P = 3.0e-35
 Identities = 110/378 (29%), Positives = 189/378 (50%)

Query:     8 LFRALRRGDAATVRESARLNGNGILDMSQNR-DTALHIAARFGHKNVVMEILELRPDLVS 66
             +F  L  GD   + E  +  G  +  +  +R D+ LH+AAR+GH  +V  I+   P LV 
Sbjct:    85 VFSGLSDGDKECL-EMLKGVGTPMACLKSDRGDSVLHLAARWGHLELVKNIISECPCLVL 143

Query:    67 VENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRK-----QDEEGNTPLHN 121
               N K + P+HVAA AG+  + +  +      ++    +D  R      +D+ GNT LH 
Sbjct:   144 ELNFKDQLPLHVAAHAGHSAIVEALVASVTFFSDRLAEEDRERLNPYVLRDKYGNTALHL 203

Query:   122 AVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKE--------KL 173
             A+     +MA +++ ++       N  G S L +A++AG   +   I+K         + 
Sbjct:   204 AIEGRYMEMAASLVNENQNASFLENNEGISSLYMAVEAGDVTLVKEILKTAGNNDLEGRN 263

Query:   174 SVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIA 233
             S LD +      L+H+A+   +  V+  IL     L +  D+  R  L +AA++G ++  
Sbjct:   264 SNLDSKLEGRKHLVHVALNARSIGVLDVILNEYPSLEDERDEEGRTCLSFAASIGFYKGV 323

Query:   234 CRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAA 293
             C L D      Y  D +G  P+H A+ENG + ++K +L   P S   L+K  +N+LH+AA
Sbjct:   324 CNLLDRSTKNVYVCDEDGSFPIHTAAENGHIRIVKEILKRCPHSKHMLNKLGQNVLHIAA 383

Query:   294 QNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNE 353
             + G  N+V  + +  + + +    D++GNTPLHLA +N  +  +  LA ++++ ++  N+
Sbjct:   384 KIGEHNLVKSLMRSDDTKHLGVGQDVDGNTPLHLAVLNWRYRSIRTLASDVKI-LQLRND 442

Query:   354 KKQTALAIVQPSLHQNDI 371
                TA  I +  L  N I
Sbjct:   443 NGLTARGIAESVLKPNYI 460

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 6.8e-33, P = 6.8e-33
 Identities = 111/377 (29%), Positives = 187/377 (49%)

Query:     8 LFRALRRGDAATVRESARLNGNGILDMSQNR--DTALHIAARFGHKNVVMEILELRPDLV 65
             +F A+R G+   + +  + N N  L   +N   D  LH+AA +G   +V  I+   P L+
Sbjct:    40 IFSAMRAGNVKFL-DKMKTNNNTPLACFRNETGDFTLHLAAAWGRLELVKRIVSECPCLL 98

Query:    66 SVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDD------ILRKQDEEGNTPL 119
                N K + P+H AA AG   V + F+    N  + G  ++      +   +D +GNT L
Sbjct:    99 LETNSKDQIPLHAAAAAGRLAVVEAFVA-RVNEISDGLSEEERERVNLYAMKDIDGNTAL 157

Query:   120 HNAVRKCDGKMAFTMIRKDPELICYI-NKAGQSPLSLAIDAG-LTHI-ACCIIKEKLSVL 176
             H A++    K A  +++ +  L  ++ N  G SPL  AI AG LT + A   +  +   L
Sbjct:   158 HLALKGGHLKTAACLVKAN-HLASFLANNHGVSPLFTAIIAGSLTLVEAMMYVPGQTCNL 216

Query:   177 DHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRL 236
               +     +L+H A+   N  ++  IL     L+N  D+  R  L  AA +G+++    L
Sbjct:   217 ASKLEGRKSLVHAALKAKNSDILDVILSEDPSLVNERDEEGRTCLSVAAYVGYYKGVVNL 276

Query:   237 SDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNG 296
                  +  +E D +G  P+H+A E G++ +  +LL   PDS   L+K+ +NILH+AA++G
Sbjct:   277 LHRSTSNVFECDDDGSYPIHMAVEKGRVKIFLKLLKCCPDSQYLLNKQGQNILHIAAKSG 336

Query:   297 HANVVVF-ISKLPEI--EDMINSSDLEGNTPLHLAAINNHFNIVLILAR-NMRVNIRATN 352
                  +  + K  ++   D+I   D++GNTPLHLA +      V IL +  +  ++   N
Sbjct:   337 KTGTYLLQVIKAYDLIKNDLIMEQDVDGNTPLHLATLTWRPRTVNILNKFTLGNHLHIRN 396

Query:   353 EKKQTALAIVQPSLHQN 369
             +   +AL I + +L  N
Sbjct:   397 KDGLSALDIAESNLQSN 413

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 3.1e-31, P = 3.1e-31
 Identities = 104/373 (27%), Positives = 189/373 (50%)

Query:    22 ESARLNGNGILDMSQNR-DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAA 80
             E  R  G  +  +  N  D+ LH+A  +GH  +V EI+   P L+  +N   +TP+HVAA
Sbjct:   115 EKLRSRGISVARIKSNTGDSILHLAVTWGHLELVKEIVCECPRLLLEQNSSGQTPLHVAA 174

Query:    81 RAGNFGVAKIFMR--PHGNGNNTGTFDDILRK---QDEEGNTPLHNAVRKCDGKMAFTMI 135
              +G+  + + F+      +        + +     +D++GNT L+ A+     +MA  ++
Sbjct:   175 HSGHTTIVEAFVALVTFSSARLCNEESERMNPYVLKDKDGNTALYYAIEGRYFEMAVCLV 234

Query:   136 RKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK--------EKLSVLDHRGPNDLTLL 187
               + +     NK G S L +AI+ G   +   I+K         K S L+ +     +L 
Sbjct:   235 NANQDAPFLGNKYGVSSLFVAINTGDVSLVKAILKIIGNKDLKGKKSNLESKLQGQKSLA 294

Query:   188 HIAIIKSNFV-VMAKILEAKRDLINVLDKRDRNP---LHYAAALGHFEIACRLSDEDDTL 243
             H+A++  +   V+  IL+   +  +++D+RD N    L  AA +G++E  C L +     
Sbjct:   295 HVALVTQSIAGVLDVILD---EYPSLMDERDINGWTCLSLAAHIGYYEGVCNLLERSTKG 351

Query:   244 AYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGH---ANV 300
              Y  D +G  P+H A+E G  ++++  +   P S   L+K  +N+LH+AA+NG    +N+
Sbjct:   352 VYVCDQDGSFPIHTAAEKGHENIVEEFIKRCPGSKHLLNKLGQNVLHIAAKNGKFWISNM 411

Query:   301 VVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALA 360
             ++ I+K  + E +    D++GNTPLHLA +N HF  +  LAR+ ++ ++  N+    A  
Sbjct:   412 LI-INK--DTEHLGVGQDVDGNTPLHLAVMNWHFKSITWLARSSKI-LKVRNKNGLRARD 467

Query:   361 IVQPSLHQNDILE 373
             I +  +  + I +
Sbjct:   468 IAEREVKPHYIFQ 480

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 7.6e-28, Sum P(2) = 7.6e-28
 Identities = 85/261 (32%), Positives = 133/261 (50%)

Query:   116 NTPLHNAVRKCDGKMAFTMIRKDP-----ELICYINKAGQSPLSLAIDAGLTHIACCIIK 170
             +TPLH AVR+    +   MI +       EL+   N++G++ L +A + G T +   ++K
Sbjct:    18 DTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAEYGYTDMVKILMK 77

Query:   171 EKLSVL-DHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGH 229
                SVL   +  N     HIA    N  V+  ++EA  +L    D      LH AA+ GH
Sbjct:    78 HSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQGH 137

Query:   230 FEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNIL 289
              EI C L D+   LA     NG++ LH A+ NG   ++K+L+      +  +DKK +  L
Sbjct:   138 GEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTAL 197

Query:   290 HLAAQNGHANVVVFISKLPEIE-DMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNI 348
             H+A +  +  +V     L E +  +INS+D +GNTPLH+A   N   IV  + +   V+ 
Sbjct:   198 HMAVKGQNTEIV---DVLMEADGSLINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSR 254

Query:   349 RATNEKKQTALAIVQPS-LHQ 368
              A N+  +TAL I + + LH+
Sbjct:   255 VAVNKSGETALDIAEKTGLHE 275

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2129690 ACD6 "AT4G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 99/357 (27%), Positives = 171/357 (47%)

Query:    35 SQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRP 94
             S   D+ LHIAA++GH  +V EI+   P L+  +N   +TP+HVA   G+  V +  +  
Sbjct:    98 SNTGDSILHIAAKWGHLELVKEIIFECPCLLFEQNSSRQTPLHVATHGGHTKVVEALVAS 157

Query:    95 HGNG-------NNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINK 147
               +         + G    +L+  DE+GNT L+ A+     +MA  ++  D +     N 
Sbjct:   158 VTSALASLSTEESEGLNPHVLK--DEDGNTALYYAIEGRYLEMATCLVNADKDAPFLGNN 215

Query:   148 AGQSPLSLAIDAG--LTHIACCIIK----------EKLSVLDHRGPNDLTLLHIAIIKSN 195
              G S L  A+DAG     +   I+K           K + LD +   +  L H+A+   +
Sbjct:   216 KGISSLYEAVDAGNKFEDLVKAILKTTDDNVDREVRKFN-LDSKLQGNKHLAHVALKAKS 274

Query:   196 FVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPL 255
               V+  IL+    L++  D+  R  L Y A++G+++  C + +      Y  D +G  P+
Sbjct:   275 IGVLDVILDEYPSLMDEQDEDGRTCLSYGASIGYYKGLCNILNRSTKGVYVCDQDGSFPI 334

Query:   256 HLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMIN 315
             H A++N    ++K  +   P S   L++  +NILH+AA+N  +     +    + + +  
Sbjct:   335 HSAAKNEHYEIIKEFIKRCPASKYLLNRLGQNILHVAAKNEASLTAYMLMHDKDTKHLGV 394

Query:   316 SSDLEGNTPLHLAAINNHFNIVLILA-RNMRVNIRATNEKKQTALAIVQPSLHQNDI 371
               D++GNTPLHLA +N  F+ +  LA RN  + ++  N+    A  I +  +  N I
Sbjct:   395 GQDVDGNTPLHLAVMNWDFDSITCLASRNHEI-LKLRNKSGLRARDIAESEVKPNYI 450

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009615 "response to virus" evidence=IEP

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 6.3e-25, P = 6.3e-25
 Identities = 94/360 (26%), Positives = 169/360 (46%)

Query:    22 ESARLNGNGILDMSQNR-DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAA 80
             E  R +G  +  +  +R D+ LH+AA + H  +V  I+     L+   N K + P+HVAA
Sbjct:   102 EKLRSHGTPLTCLKNDRGDSVLHLAATWSHLELVKNIVSECSCLLMESNSKDQLPLHVAA 161

Query:    81 RAGNFGVAK------IFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTM 134
             R G+  V +       F        +    +  L K D  G+T L+ A++    ++A  +
Sbjct:   162 RMGHLAVVEDLVASVTFFSARLAEEDREILNPYLLK-DINGDTALNLALKGHYTEVALCL 220

Query:   135 IRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKE---KLSVLDHRGPNDLTLLHIAI 191
             +  + +      K G SPL LA++A    +   ++     +   L+  G   L   H A+
Sbjct:   221 VNANRQASFLACKDGISPLYLAVEAKDASLVKAMLGNDGPQRKNLNLEGRKYLA--HAAL 278

Query:   192 IKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNG 251
                +  ++  IL     L++  D+  R  L + A++G+ +  C L +      +  D +G
Sbjct:   279 NSLSTDILDVILNEYPSLVDERDEEGRTCLSFGASIGYHKGVCNLLNRSRKGVFVCDDDG 338

Query:   252 QSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIE 311
               P+HLA E G++ ++K +    P S   L+KK +N+LH+AA++G   ++  ++   +I 
Sbjct:   339 SYPIHLAVEKGRIKVVKEICKRCPYSKLLLNKKGQNLLHIAAESGKFRILRHLTAHEQIN 398

Query:   312 DMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDI 371
              + N  D++GNTPLHLA I  ++    +     + N+   N     AL I +  L  + I
Sbjct:   399 HLANEKDVDGNTPLHLATI--YWRPRAVRELGGKKNLLIQNNNGLVALDIAESKLQPHYI 456

GO:0005739 "mitochondrion" evidence=ISM

UNIPROTKB|F1MY81 ANK1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 289 (106.8 bits), Expect = 1.7e-22, P = 1.7e-22
 Identities = 106/353 (30%), Positives = 166/353 (47%)

Query:    31 ILDMSQNR-DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAK 89
             IL+ +  + +TALHIAA  G   VV E++    + V+ ++ K  TP+++AA+  +  V K
Sbjct:    69 ILETTTKKGNTALHIAALAGQDEVVRELVNYGAN-VNAQSQKGFTPLYMAAQENHLEVVK 127

Query:    90 IFMRPHGNGNNTGTFDD-----ILRKQDEEG--------------NTP-LHNAVRKCDGK 129
              F+  +G   N  T D      +  +Q  E                 P LH A R  D +
Sbjct:   128 -FLLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTR 186

Query:   130 MAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHI 189
              A  +++ DP     ++K G +PL +A      ++A  ++    SV +    N +T LHI
Sbjct:   187 TAAVLLQNDPNPDV-LSKTGFTPLHIAAHYENLNVAQLLLNRGASV-NFTPQNGITPLHI 244

Query:   190 AIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDC 249
             A  + N V+M ++L  +   I    K +  PLH AA  GH  I+  L D    +  +   
Sbjct:   245 ASRRGN-VIMVRLLLDRGAQIETRTKDELTPLHCAARNGHLRISEILLDHGAPIQAKTK- 302

Query:   250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLP 308
             NG SP+H+A++   L  + RLL  Y   I+ +   +   LH+AA  GH  V  V + K  
Sbjct:   303 NGLSPIHMAAQGDHLDCV-RLLLQYNAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGA 361

Query:   309 EIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
             +     NS  L G TPLH+A   NH  ++ +L + M  +I A  E   T L +
Sbjct:   362 KP----NSRALNGFTPLHIACKKNHIRVMELLLK-MGASIDAVTESGLTPLHV 409

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1NJR5 Gga.55799 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 289 (106.8 bits), Expect = 3.5e-22, P = 3.5e-22
 Identities = 104/352 (29%), Positives = 164/352 (46%)

Query:    31 ILDMSQNR-DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAK 89
             +L+ +  + +TALHIAA  G ++VV E++    + V+ ++ K  TP+++AA+  +  V K
Sbjct:   103 VLETTTKKGNTALHIAALAGQQDVVRELVNYGAN-VNAQSQKGFTPLYMAAQENHLEVVK 161

Query:    90 IFMRPHGNGNNTGTFDD-----ILRKQDEEG--------------NTP-LHNAVRKCDGK 129
              F+  +G   N  T D      +  +Q  E                 P LH A R  D +
Sbjct:   162 -FLLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTR 220

Query:   130 MAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHI 189
              A  +++ DP     ++K G +PL +A       +A  ++    SV +    N +T LHI
Sbjct:   221 TAAVLLQNDPNADV-LSKTGFTPLHIAAHYENLSVAQLLLNRGASV-NFTPQNGITPLHI 278

Query:   190 AIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDC 249
             A  + N ++M ++L  +   I    K +  PLH AA  GH  IA  L D    +  +   
Sbjct:   279 ASRRGN-IIMVRLLLDRGAQIETRTKDELTPLHCAARNGHVRIAEILLDHGAPIQAKTK- 336

Query:   250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPE 309
             NG SP+H+A++   L  + RLL  Y   I+ +   +   LH+AA  GH  V      L E
Sbjct:   337 NGLSPIHMAAQGDHLDCV-RLLLQYSAEIDDITLDHLTPLHVAAHCGHHRVAKL---LVE 392

Query:   310 IEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
                  NS  L G TPLH+A   NH  ++ +L +    +I A  E   T L +
Sbjct:   393 KGAKPNSRALNGFTPLHIACKKNHIRVMELLLKT-GASIDAVTESGLTPLHV 443

GO:0007165 "signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	464
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-24
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-19
pfam13962	114	pfam13962, PGG, Domain of unknown function	3e-18
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-12
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	6e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-06
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	1e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-04
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	2e-04
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	2e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.001
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.002
PHA02743	166	PHA02743, PHA02743, Viral ankyrin protein; Provisi	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.003
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.003
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 97.5 bits (243), Expect = 2e-24
 Identities = 52/130 (40%), Positives = 75/130 (57%), Gaps = 5/130 (3%)

Query: 211 NVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRL 270
           N  D+  R PLH AA+ GH E+   L +    +   +D +G++PLHLA++NG L ++K L
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 271 LHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAI 330
           L    D +   DK     LHLAA+NG+ +VV  + K       +N+ D +G TPLHLAA 
Sbjct: 60  LEKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHG---ADVNARDKDGRTPLHLAAK 115

Query: 331 NNHFNIVLIL 340
           N H  +V +L
Sbjct: 116 NGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 84.4 bits (209), Expect = 1e-19
 Identities = 49/128 (38%), Positives = 68/128 (53%), Gaps = 3/128 (2%)

Query: 177 DHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRL 236
           + R  +  T LH+A    +  V+  +LE   D +N  D   R PLH AA  GH EI   L
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 237 SDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNG 296
            ++   +   RD +G +PLHLA+ NG L ++K LL  +   +   DK  R  LHLAA+NG
Sbjct: 60  LEKGADV-NARDKDGNTPLHLAARNGNLDVVKLLL-KHGADVNARDKDGRTPLHLAAKNG 117

Query: 297 HANVVVFI 304
           H  VV  +
Sbjct: 118 HLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 79.9 bits (198), Expect = 3e-18
 Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 7/70 (10%)

Query: 396 EDMAQNLLVMATLVATLTFTSAFTIPGGYND------KGVPIFDTNLV-FKAFVLTDTIA 448
           E    +LLV+ATL+AT+TF + FT PGGY         G PI       FKAF +++TIA
Sbjct: 5   EKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVSNTIA 64

Query: 449 MTTSLTAAVL 458
              SL A +L
Sbjct: 65  FVASLVAVIL 74

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 38/128 (29%), Positives = 66/128 (51%), Gaps = 3/128 (2%)

Query: 144 YINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKIL 203
             ++ G++PL LA   G   +   +++    V + +  +  T LH+A    +  ++  +L
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 204 EAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGK 263
           E   D +N  DK    PLH AA  G+ ++   L      +   RD +G++PLHLA++NG 
Sbjct: 61  EKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGH 118

Query: 264 LSLLKRLL 271
           L ++K LL
Sbjct: 119 LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 42/114 (36%), Positives = 67/114 (58%), Gaps = 5/114 (4%)

Query: 246 ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFIS 305
            RD +G++PLHLA+ NG L ++K LL      +   D   R  LHLAA+NGH  +V  + 
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLL-ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 306 KLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
           +       +N+ D +GNTPLHLAA N + ++V +L ++   ++ A ++  +T L
Sbjct: 61  EKGAD---VNARDKDGNTPLHLAARNGNLDVVKLLLKH-GADVNARDKDGRTPL 110

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 12/129 (9%)

Query: 37  NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
           +  T LH+AA  GH  VV  +LE   D V+ +++   TP+H+AA+ G+  + K+ +    
Sbjct: 6   DGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLE--- 61

Query: 97  NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLA 156
                      +  +D++GNTPLH A R  +  +   +++     +   +K G++PL LA
Sbjct: 62  -------KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG-ADVNARDKDGRTPLHLA 113

Query: 157 IDAGLTHIA 165
              G   + 
Sbjct: 114 AKNGHLEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 111 QDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK 170
           +DE+G TPLH A      ++   ++    + +   +  G++PL LA   G   I   +++
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 171 EKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHF 230
           +   V + R  +  T LH+A  ++  + + K+L      +N  DK  R PLH AA  GH 
Sbjct: 62  KGADV-NARDKDGNTPLHLAA-RNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL 119

Query: 231 EIA 233
           E+ 
Sbjct: 120 EVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 67.3 bits (165), Expect = 4e-14
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 6/89 (6%)

Query: 255 LHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMI 314
           LHLA++NG L L+K LL    D            LHLAA+NG+  +V     L E    +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD---VNLGDTDTALHLAARNGNLEIV---KLLLEHGADV 54

Query: 315 NSSDLEGNTPLHLAAINNHFNIVLILARN 343
           N+ D +GNT LHLAA N +  IV +L  +
Sbjct: 55  NAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 62.8 bits (153), Expect = 4e-12
 Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 12/135 (8%)

Query: 69  NHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDG 128
           +    TP+H+AA  G+  V K+ +  +G   N          +D +G TPLH A +    
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLE-NGADVN---------AKDNDGRTPLHLAAKNGHL 53

Query: 129 KMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLH 188
           ++   ++ K  + +   +K G +PL LA   G   +   ++K    V + R  +  T LH
Sbjct: 54  EIVKLLLEKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADV-NARDKDGRTPLH 111

Query: 189 IAIIKSNFVVMAKIL 203
           +A    +  V+  +L
Sbjct: 112 LAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 62.4 bits (152), Expect = 5e-12
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 16/126 (12%)

Query: 8   LFRALRRGDAATVRESARL--NGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLV 65
           L  A   G    V+    L  NG  +     +  T LH+AA+ GH  +V  +LE   D V
Sbjct: 11  LHLAASNGHLEVVKL---LLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-V 66

Query: 66  SVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRK 125
           +  +    TP+H+AAR GN  V K+ ++   + N           +D++G TPLH A + 
Sbjct: 67  NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNA----------RDKDGRTPLHLAAKN 116

Query: 126 CDGKMA 131
              ++ 
Sbjct: 117 GHLEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 13/100 (13%)

Query: 42  LHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNT 101
           LH+AA+ G+  +V  +LE   D   V    ++T +H+AAR GN  + K+ +  HG   N 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD---VNLGDTDTALHLAARNGNLEIVKLLL-EHGADVNA 56

Query: 102 GTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPEL 141
                    +D++GNT LH A R  + ++   ++    ++
Sbjct: 57  ---------KDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 8  LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSV 67
          L  A + G+   V+    L   G      + DTALH+AAR G+  +V  +LE   D+ + 
Sbjct: 1  LHLAAKNGNLELVKL---LLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 68 ENHKSETPMHVAARAGNFGVAKIFM 92
          +     T +H+AAR GN  + K+ +
Sbjct: 58 DKDG-NTALHLAARNGNLEIVKLLL 81

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 52.6 bits (127), Expect = 7e-09
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 14/95 (14%)

Query: 187 LHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYE 246
           LH+A    N  ++  +LE      +V        LH AA  G+ EI   L      L + 
Sbjct: 1   LHLAAKNGNLELVKLLLEKG---ADVNLGDTDTALHLAARNGNLEIVKLL------LEHG 51

Query: 247 -----RDCNGQSPLHLASENGKLSLLKRLLHSYPD 276
                +D +G + LHLA+ NG L ++K LL    D
Sbjct: 52  ADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 46/187 (24%), Positives = 70/187 (37%), Gaps = 27/187 (14%)

Query: 182 NDLTLLHIA----IIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAA--LGHFEIACR 235
           N+ T LH         ++   + K+L      +N  D     PL YA +     + I   
Sbjct: 67  NNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEY 126

Query: 236 LSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQN 295
           L D        ++ +G++ LHL  E+ K+ L           ++ L  K  +I      N
Sbjct: 127 LLDNG-ANVNIKNSDGENLLHLYLESNKIDL---------KILKLLIDKGVDI------N 170

Query: 296 GHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKK 355
               V   +S    I    N  D+ G TPLH A  NN+   V  L  ++  N    N+  
Sbjct: 171 AKNRVNYLLSYGVPI----NIKDVYGFTPLHYAVYNNNPEFVKYLL-DLGANPNLVNKYG 225

Query: 356 QTALAIV 362
            T L I 
Sbjct: 226 DTPLHIA 232

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 53/198 (26%), Positives = 77/198 (38%), Gaps = 20/198 (10%)

Query: 161 LTHIACCIIKEKLSVLDHRGPNDL---------TLLHIAIIKSNFVVMAKILEAKRDLIN 211
           L  I  C +   L  L      DL           L +A++ +  +    +       + 
Sbjct: 8   LLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLA 67

Query: 212 VLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLS-----L 266
             D   R PLH AA+ G  +I  +L          +D +G +PLHLA+ NG        +
Sbjct: 68  ARDLDGRLPLHSAASKGDDKI-VKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEV 126

Query: 267 LKRLLH--SYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTP 324
            K LL   +  D     D+     LH AA NG A++V  +  L    D  NS +  G T 
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELL--LEAGAD-PNSRNSYGVTA 183

Query: 325 LHLAAINNHFNIVLILAR 342
           L  AA N    +V +L  
Sbjct: 184 LDPAAKNGRIELVKLLLD 201

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 66/244 (27%), Positives = 109/244 (44%), Gaps = 27/244 (11%)

Query: 113 EEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEK 172
           +E  TPL +A+R  D K+    I+   + I +IN     PL  AI  G   I   +I   
Sbjct: 33  DETTTPLIDAIRSGDAKIVELFIKHGAD-INHINTKIPHPLLTAIKIGAHDIIKLLIDNG 91

Query: 173 LSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEI 232
           +         D ++L I  I+ + +    IL+   D +N+ D   +  LHYA   G  E 
Sbjct: 92  V---------DTSILPIPCIEKDMI--KTILDCGID-VNIKDAELKTFLHYAIKKGDLES 139

Query: 233 ACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNI---L 289
              L +    +  E D NG  P+H+A ++    ++K LL    +   + + K+ N    L
Sbjct: 140 IKMLFEYGADVNIE-DDNGCYPIHIAIKHNFFDIIKLLL----EKGAYANVKDNNGESPL 194

Query: 290 HLAAQNG-HANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNI 348
           H AA+ G +A + + I     I +   +    G TPLH A I+N  + + +L  N  +N 
Sbjct: 195 HNAAEYGDYACIKLLIDHGNHIMNKCKN----GFTPLHNAIIHNR-SAIELLINNASIND 249

Query: 349 RATN 352
           +  +
Sbjct: 250 QDID 253

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 4/84 (4%)

Query: 153 LSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINV 212
           L LA   G   +   ++++   V      +  T LH+A    N  ++  +LE   D +N 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLG---DTDTALHLAARNGNLEIVKLLLEHGAD-VNA 56

Query: 213 LDKRDRNPLHYAAALGHFEIACRL 236
            DK     LH AA  G+ EI   L
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 6/87 (6%)

Query: 8   LFRALRRGDAATVRESARLNGNGILDMSQNRD--TALHIAARFGHKNVVMEILELRPDLV 65
           L  A + G    V+    L   G    ++++D  T LH+AAR G+ +VV  +L+   D V
Sbjct: 44  LHLAAKNGHLEIVKL---LLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD-V 99

Query: 66  SVENHKSETPMHVAARAGNFGVAKIFM 92
           +  +    TP+H+AA+ G+  V K+ +
Sbjct: 100 NARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 56/239 (23%), Positives = 89/239 (37%), Gaps = 62/239 (25%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN 99
           T LH A + G    +  + E   D V++E+     P+H+A +   F + K+ +       
Sbjct: 126 TFLHYAIKKGDLESIKMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDIIKLLLE------ 178

Query: 100 NTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDA 159
             G + ++   +D  G +PLHNA    D                         + L ID 
Sbjct: 179 -KGAYANV---KDNNGESPLHNAAEYGDYAC----------------------IKLLIDH 212

Query: 160 GLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRN 219
           G  HI             ++  N  T LH AII +   +   I  A    IN  D     
Sbjct: 213 G-NHIM------------NKCKNGFTPLHNAIIHNRSAIELLINNAS---INDQDIDGST 256

Query: 220 PLHYAAALGHFEIACRLSDEDDTLAYE------RDCNGQSPLHLASEN-GKLSLLKRLL 271
           PLH+A         C + D  D L Y       +D  G++P+  A +   K  ++K ++
Sbjct: 257 PLHHA-----INPPCDI-DIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDII 309

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 38 RDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIF 91
            TALH AA  G   +V  +LE   D+    +    T +H+AA  GN  V K+ 
Sbjct: 1  GRTALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 314 INSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
           +N++D  GNTPLHLAA      +V  L +   V++   +    TAL
Sbjct: 9   LNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTAL 53

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 43.7 bits (102), Expect = 8e-05
 Identities = 46/168 (27%), Positives = 65/168 (38%), Gaps = 9/168 (5%)

Query: 208 DLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLL 267
           DL N  DK+    L  A           L    D     RD +G+ PLH A+  G   ++
Sbjct: 30  DLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIV 89

Query: 268 KRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVF------ISKLPEIEDMINSSDLEG 321
           K LL +    +   D      LHLAA NG+            +    +++   N  D +G
Sbjct: 90  K-LLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV-NNLRDEDG 147

Query: 322 NTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQN 369
           NTPLH AA+N   +IV  L      +  + N    TAL     +    
Sbjct: 148 NTPLHWAALNGDADIV-ELLLEAGADPNSRNSYGVTALDPAAKNGRIE 194

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 285 NRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
            R  LH AA +G   +V ++ +       IN +D +GNT LH+AA N +  ++ +L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVD---INRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 218 RNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLL 271
           R  LH AA  G  E+   L  E        D +G + LH+A+ENG L +LK LL
Sbjct: 2   RTALHKAAISGRLELVKYLL-EKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 60/234 (25%), Positives = 99/234 (42%), Gaps = 41/234 (17%)

Query: 152 PLSLAIDAGLTHIACCIIKEKLSV--LDHRGPNDLTLLHIAIIKSNFVVMAKILEA--KR 207
           PL  A++A    +   ++    +V   DHR   DLT LHI   + N + M +++ +  K 
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHR---DLTPLHIICKEPNKLGMKEMIRSINKC 96

Query: 208 DLINVLDK-----RDRNPLHYAAALGHFEIACRLSD--------EDDT---------LAY 245
            +   L        +RN   +   L +     +  D        +DD          L+Y
Sbjct: 97  SVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSY 156

Query: 246 ERDCN------GQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHAN 299
             D N      G + LH A+EN K   L  LL SY  ++   DK N + LH A ++ +  
Sbjct: 157 GADINMKDRHKGNTALHYATEN-KDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKP 215

Query: 300 VVVFISKLPEIEDMINSSDLEGNTPLHLAA--INNHFNIVLILARNMRVNIRAT 351
           +V     L E     ++ D  GNTPLH++     ++  + L+L   + VN ++ 
Sbjct: 216 IV---HILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY 266

Length = 477

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 42/172 (24%), Positives = 56/172 (32%), Gaps = 29/172 (16%)

Query: 181 PNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDED 240
             +   L  A       V   + E K+  IN  D+  R+ L  AA          L    
Sbjct: 16  DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNL 75

Query: 241 DTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANV 300
                     G + LH  S              Y D++E +      +LHL A    +  
Sbjct: 76  SCRGAV----GDTLLHAISLE------------YVDAVEAI------LLHLLAAFRKS-- 111

Query: 301 VVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIV-LILARNMRVNIRAT 351
                 L    D   S    G T LHLAA   ++ IV L+L R   V  RA 
Sbjct: 112 ----GPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARAC 159

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 184 LTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRL 236
            T LH A I     ++  +LE   D IN  D+     LH AA  G+ E+   L
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 237 SDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFL----DKKNRNILHLA 292
             E+   A E D  G++ LH    NG ++ L    ++  D   +L    ++  +  +H+ 
Sbjct: 3   PPEEIIFASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIV 62

Query: 293 AQNGHANVVVFISKLPEIEDMINSSD-LEGNTPLHLAAINNHFNIVLILARNMRVNIRAT 351
           +    A+    +  L E    IN  + + GNTPLH+A    ++ +   L     VN+   
Sbjct: 63  SNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEIL 122

Query: 352 NEKKQT 357
           N   +T
Sbjct: 123 NYAFKT 128

Length = 154

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 9/154 (5%)

Query: 246 ERDCNGQSPLHLASENGKLSLLKRLL-----HSYPDSIEFLDKKNRNILHLAAQNGHANV 300
           E++  G++  H A+  G   ++ R         +  ++   D   +  +H+AA+   A +
Sbjct: 16  EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQL 75

Query: 301 VV-FISKLPEIEDMINSSD-LEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTA 358
               I  L E+   IN+ + LEG+T LHLAA     ++   L     +++   N   ++ 
Sbjct: 76  AAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSP 135

Query: 359 --LAIVQPSLHQNDILEGHGGSASGTGTTTTDLI 390
             LAI    +    IL     ++ G     TD++
Sbjct: 136 FELAIDNEDVAMMQILREIVATSRGFSNENTDIV 169

Length = 169

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 58/244 (23%), Positives = 107/244 (43%), Gaps = 12/244 (4%)

Query: 117 TPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVL 176
           TP+H A  + + KM   ++    + +  I     S L  A+D+        II  + ++ 
Sbjct: 180 TPIHYAAERGNAKMVNLLLSYGAD-VNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNI- 237

Query: 177 DHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRL 236
                NDL+LL    I++  +  + +L      +N +D     PLH+A+           
Sbjct: 238 ---NKNDLSLLKA--IRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPK 292

Query: 237 SDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQ-N 295
             E       ++  G++PL+L ++NG  +   R L      +   D+     LH A+  +
Sbjct: 293 LLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLD 352

Query: 296 GHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKK 355
            + ++V+    L E+   +N+ D    TP+H AA+ N+  I+  L  +   +I A ++K 
Sbjct: 353 RNKDIVI---TLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLL-DYGADIEALSQKI 408

Query: 356 QTAL 359
            TAL
Sbjct: 409 GTAL 412

Length = 682

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 202 ILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLA 258
           +LE     +N  D     PLH AA  G  E+   L          RD +G + L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
           RD +G++PLH+A  NG + +++ LL    D    LDK  +  L LA +NG   VV  +S+
Sbjct: 111 RDYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAEENGFREVVQLLSR 169

Length = 664

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 20/122 (16%)

Query: 239 EDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHS--YPDSIEFLDKKNRNILHLAAQNG 296
            +D L          PL+LA E   + ++K LL +    +S     K N   LH  +   
Sbjct: 23  MEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSS---TKNNSTPLHYLSNIK 79

Query: 297 HANVVVFISKLPEIEDMI-------NSSDLEGNTPLHLAAIN--NHFNIV-LILARNMRV 346
           +      ++ + EI  ++       N+ D  G TPL  A     N ++IV  +L     V
Sbjct: 80  YN-----LTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV 134

Query: 347 NI 348
           NI
Sbjct: 135 NI 136

Length = 422

>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 270 LLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLE-GNTPLHLA 328
           LLH Y       D   R   H+ A    AN V+ I  L  +   IN+ +L  GNT LH+A
Sbjct: 49  LLHRY-------DHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIA 101

Query: 329 AINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
           A   ++ +   L R + VN+ A N + +TA  I
Sbjct: 102 ASTKNYELAEWLCRQLGVNLGAINYQHETAYHI 134

Length = 166

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 320 EGNTPLHLAAINNHFNIV-LILARNMRVNIR 349
           +GNTPLHLAA N H  +V L+L     VN R
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNAR 31

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 253 SPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVF 303
           + LH A+ +G+L L+K LL    D I   D+     LH+AA+NG+  V+  
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKL 52

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 270 LLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
           LL   P  +   D      LHLAA+ G   +V ++ K       +N  D +G T L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGV---DLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 39.7 bits (92), Expect = 0.003
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 7/154 (4%)

Query: 210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKR 269
           +N  D+    PLH A+ L   +       E       RD   ++P+H A+    + ++  
Sbjct: 334 VNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINT 393

Query: 270 LLHSYPDSIEFLDKKNRNILHLA--AQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHL 327
           LL  Y   IE L +K    LH A    N + +V   I +   +    NS + + +TPLH 
Sbjct: 394 LL-DYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANV----NSKNKDLSTPLHY 448

Query: 328 AAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
           A   N    V+ +  +   ++ A N + Q  L I
Sbjct: 449 ACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLI 482

Length = 682

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	464
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.96
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.95
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.9
KOG0514	452	consensus Ankyrin repeat protein [General function	99.89
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.87
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
PHA02743	166	Viral ankyrin protein; Provisional	99.84
PHA02741	169	hypothetical protein; Provisional	99.84
PHA02741	169	hypothetical protein; Provisional	99.83
PHA02736	154	Viral ankyrin protein; Provisional	99.83
PF13962	113	PGG: Domain of unknown function	99.81
PHA02884	300	ankyrin repeat protein; Provisional	99.81
PHA02884	300	ankyrin repeat protein; Provisional	99.81
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.81
PHA02736	154	Viral ankyrin protein; Provisional	99.79
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.78
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.74
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.73
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.71
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.68
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.68
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.68
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.67
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.61
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.55
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.52
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.49
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.46
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.46
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.42
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.41
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.4
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.4
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.37
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.36
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.35
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.16
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.88
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.83
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.81
PF13606	30	Ank_3: Ankyrin repeat	98.8
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.79
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.74
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.73
PF13606	30	Ank_3: Ankyrin repeat	98.69
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.62
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.62
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.61
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.57
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.57
KOG0522	560	consensus Ankyrin repeat protein [General function	98.5
KOG0522	560	consensus Ankyrin repeat protein [General function	98.5
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.35
KOG0511	516	consensus Ankyrin repeat protein [General function	98.2
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.05
KOG0511	516	consensus Ankyrin repeat protein [General function	98.03
KOG2384	223	consensus Major histocompatibility complex protein	97.97
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.93
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.82
KOG2384	223	consensus Major histocompatibility complex protein	97.75
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.65
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.57
KOG2505	591	consensus Ankyrin repeat protein [General function	96.89
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.65
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.61
KOG2505	591	consensus Ankyrin repeat protein [General function	96.34
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.05
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.88
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.49
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.4
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	92.84
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.76
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	91.87
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	86.86

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.7e-51  Score=410.98  Aligned_cols=358  Identities=21%  Similarity=0.237  Sum_probs=312.5

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHH--------------------------------------
Q 038664            5 ARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAA--------------------------------------   46 (464)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~--------------------------------------   46 (464)
                      .++||+|++.|+.|.|+.++++++.-....+..|.||||+|+                                      
T Consensus        42 ~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (682)
T PHA02876         42 FTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEAC  121 (682)
T ss_pred             chHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHH
Confidence            579999999999999999999988555677888999999666                                      


Q ss_pred             --------------------------------hcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcc
Q 038664           47 --------------------------------RFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRP   94 (464)
Q Consensus        47 --------------------------------~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~   94 (464)
                                                      ..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.++|++|+++
T Consensus       122 ~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Gad-vn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~  200 (682)
T PHA02876        122 IHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGAD-VNAKDIYCITPIHYAAERGNAKMVNLLLSY  200 (682)
T ss_pred             HHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence                                            45778899999999999 788999999999999999999999999999


Q ss_pred             cCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcc----------------------------ccccc
Q 038664           95 HGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPEL----------------------------ICYIN  146 (464)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~----------------------------~~~~~  146 (464)
                      |++.+          ..+..|.||||+|+..++.++++.|++.++..                            .+..+
T Consensus       201 Gad~n----------~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d  270 (682)
T PHA02876        201 GADVN----------IIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSID  270 (682)
T ss_pred             CCCcC----------ccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            98854          67788899999999999888888777655432                            33456


Q ss_pred             cCCCcHHHHHHHcCCH-HHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcC-CHHHHHHHHHhCchhhhhhcCCCCcHHHHH
Q 038664          147 KAGQSPLSLAIDAGLT-HIACCIIKEKLSVLDHRGPNDLTLLHIAIIKS-NFVVMAKILEAKRDLINVLDKRDRNPLHYA  224 (464)
Q Consensus       147 ~~g~t~l~~A~~~g~~-~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a  224 (464)
                      ..|.||||+|+..++. ++++.|++.+.++ +..+..|.||||+|+..| +.++++.|+..+.+ ++..|..|.||||+|
T Consensus       271 ~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gad-in~~d~~g~TpLh~A  348 (682)
T PHA02876        271 DCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD-VNAADRLYITPLHQA  348 (682)
T ss_pred             CCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCC-CCCcccCCCcHHHHH
Confidence            7899999999999986 5899999999887 888899999999999998 58999999999887 789999999999999


Q ss_pred             HHc-CCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCc-hHHHH
Q 038664          225 AAL-GHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGH-ANVVV  302 (464)
Q Consensus       225 ~~~-~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~-~~~~~  302 (464)
                      +.. ++.++++.|++.|++++ .+|..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..++ ..+++
T Consensus       349 ~~~~~~~~iv~lLl~~gadin-~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad-~~~~~~~g~T~Lh~A~~~~~~~~~vk  426 (682)
T PHA02876        349 STLDRNKDIVITLLELGANVN-ARDYCDKTPIHYAAVRNNVVIINTLLDYGAD-IEALSQKIGTALHFALCGTNPYMSVK  426 (682)
T ss_pred             HHhCCcHHHHHHHHHcCCCCc-cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-ccccCCCCCchHHHHHHcCCHHHHHH
Confidence            985 57889999999999988 6899999999999999999999999999988 48899999999999987665 46788


Q ss_pred             HHhcCcchhhhhhccCCCCCcHHHHHHHcC-CchHHHHHHhccccccccccccCCChHHhhccCchhhHHHhhcCCCCCC
Q 038664          303 FISKLPEIEDMINSSDLEGNTPLHLAAINN-HFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDILEGHGGSASG  381 (464)
Q Consensus       303 ~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~-~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~~l~~~g~~~~~  381 (464)
                      +|++.   ++++|.+|..|+||||+|++.+ +.+++++|++. |+|++.+|..|.||+++|........++...|+....
T Consensus       427 ~Ll~~---gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~-Gad~n~~d~~g~tpl~~a~~~~~~v~~Ll~~~a~~~~  502 (682)
T PHA02876        427 TLIDR---GANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDN-GADVNAINIQNQYPLLIALEYHGIVNILLHYGAELRD  502 (682)
T ss_pred             HHHhC---CCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHhCCHHHHHHHCCCCCCc
Confidence            88887   7889999999999999999976 68999999976 9999999999999999998766666667777776543

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-48  Score=394.48  Aligned_cols=359  Identities=20%  Similarity=0.248  Sum_probs=310.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhc-----CCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHH
Q 038664            6 RVLFRALRRGDAATVRESARLN-----GNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAA   80 (464)
Q Consensus         6 ~~L~~A~~~g~~~~~~~ll~~~-----~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~   80 (464)
                      ..|+.++..|+.+.+...+...     +.+....+..+.||||.|+..|+.++|+.|++.+|+.+...|..|.||||+|+
T Consensus         4 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~   83 (682)
T PHA02876          4 DDLYRIMCRGNCIDILSAIDNYDLHKHGANQCENESIPFTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTIC   83 (682)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHhhhHHHHHHHhCcccchhhchhhcccccccc
Confidence            4799999999997766666544     33334456778999999999999999999999999988889999999999666


Q ss_pred             ----------------------------------------------------------------------HhCCHHHHHH
Q 038664           81 ----------------------------------------------------------------------RAGNFGVAKI   90 (464)
Q Consensus        81 ----------------------------------------------------------------------~~g~~~~v~~   90 (464)
                                                                                            ..|+.+++++
T Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~  163 (682)
T PHA02876         84 IIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEM  163 (682)
T ss_pred             CCCCccccccccccchhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHH
Confidence                                                                                  4567888999


Q ss_pred             HhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHH
Q 038664           91 FMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK  170 (464)
Q Consensus        91 Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~  170 (464)
                      |++.|++.          +.+|..|.||||+|+..|+.+++++|++.|++ .+..+..|.|||+.|+..++.++++.|++
T Consensus       164 Ll~~Gadv----------n~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad-~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~  232 (682)
T PHA02876        164 LLEGGADV----------NAKDIYCITPIHYAAERGNAKMVNLLLSYGAD-VNIIALDDLSVLECAVDSKNIDTIKAIID  232 (682)
T ss_pred             HHhCCCCC----------CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-cCccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99998884          47889999999999999999999999999998 46778899999999999999998888776


Q ss_pred             hcCcC----------------------------cCCCCCCCCCHHHHHHHcCCH-HHHHHHHHhCchhhhhhcCCCCcHH
Q 038664          171 EKLSV----------------------------LDHRGPNDLTLLHIAIIKSNF-VVMAKILEAKRDLINVLDKRDRNPL  221 (464)
Q Consensus       171 ~~~~~----------------------------~~~~~~~~~~~l~~a~~~~~~-~~~~~ll~~~~~~~~~~~~~g~t~L  221 (464)
                      .+...                            .+..+..|.||||+|+..++. ++++.|++.+.+ ++..|..|.|||
T Consensus       233 ~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gad-in~~d~~g~TpL  311 (682)
T PHA02876        233 NRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGAD-VNAKNIKGETPL  311 (682)
T ss_pred             cCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCC-CCCcCCCCCCHH
Confidence            54432                            255677899999999999987 588888888877 889999999999


Q ss_pred             HHHHHcC-CHHHHHHHhhcCCCccccccCCCCCcccccccC-CcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchH
Q 038664          222 HYAAALG-HFEIACRLSDEDDTLAYERDCNGQSPLHLASEN-GKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHAN  299 (464)
Q Consensus       222 ~~a~~~~-~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~  299 (464)
                      |+|+..| ..++++.|+..|++.+ ..+..|.||||+|+.. ++.++++.|++.+.+ ++.+|..|+||||+|+..++.+
T Consensus       312 h~Aa~~g~~~~~v~~Ll~~gadin-~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gad-in~~d~~G~TpLh~Aa~~~~~~  389 (682)
T PHA02876        312 YLMAKNGYDTENIRTLIMLGADVN-AADRLYITPLHQASTLDRNKDIVITLLELGAN-VNARDYCDKTPIHYAAVRNNVV  389 (682)
T ss_pred             HHHHHhCCCHHHHHHHHHcCCCCC-CcccCCCcHHHHHHHhCCcHHHHHHHHHcCCC-CccCCCCCCCHHHHHHHcCCHH
Confidence            9999999 5999999999999988 6889999999999985 578999999999888 5999999999999999999999


Q ss_pred             HHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCC-chHHHHHHhccccccccccccCCChHHhhccCc-h--hhHHHhhc
Q 038664          300 VVVFISKLPEIEDMINSSDLEGNTPLHLAAINNH-FNIVLILARNMRVNIRATNEKKQTALAIVQPSL-H--QNDILEGH  375 (464)
Q Consensus       300 ~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~-~--~~~~l~~~  375 (464)
                      ++++|++.   +++++..+..|.||||+|+..++ ..++++|++. |++++.+|..|+|||++|+..+ +  ...+|..+
T Consensus       390 iv~~Ll~~---gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~-gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~  465 (682)
T PHA02876        390 IINTLLDY---GADIEALSQKIGTALHFALCGTNPYMSVKTLIDR-GANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDN  465 (682)
T ss_pred             HHHHHHHC---CCCccccCCCCCchHHHHHHcCCHHHHHHHHHhC-CCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHC
Confidence            99999987   78899999999999999998766 4568888865 9999999999999999999654 3  33458888


Q ss_pred             CCCCCCC
Q 038664          376 GGSASGT  382 (464)
Q Consensus       376 g~~~~~~  382 (464)
                      |+++...
T Consensus       466 Gad~n~~  472 (682)
T PHA02876        466 GADVNAI  472 (682)
T ss_pred             CCCCCCC
Confidence            9887543

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=4.4e-48  Score=366.54  Aligned_cols=331  Identities=14%  Similarity=0.144  Sum_probs=270.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHh--cCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCC
Q 038664            7 VLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAAR--FGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGN   84 (464)
Q Consensus         7 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~   84 (464)
                      .++.++..++.+.++.++....      ...+.++||.++.  .++.++|++|+++|++ ++.+|..|.||||+|+..|+
T Consensus        12 sl~~~~~~~n~~~~~~~l~~~~------~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~G~TpLh~Aa~~g~   84 (446)
T PHA02946         12 SLYAKYNSKNLDVFRNMLQAIE------PSGNYHILHAYCGIKGLDERFVEELLHRGYS-PNETDDDGNYPLHIASKINN   84 (446)
T ss_pred             HHHHHHccCcHHHHHHHHhccC------CCCCChHHHHHHHhcCCCHHHHHHHHHCcCC-CCccCCCCCCHHHHHHHcCC
Confidence            4677888888888888886421      1224688888764  3467889999999988 78888899999999999999


Q ss_pred             HHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCC--HHHHHHHHHhCCccccccccCCCcHHHHHHHcCCH
Q 038664           85 FGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCD--GKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLT  162 (464)
Q Consensus        85 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~--~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~  162 (464)
                      .+++++|+++|++.          +.+|..|.||||+|+..++  .+++++|++.|+++....+..|.|||+ |+..++.
T Consensus        85 ~eiv~lLL~~GAdi----------n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~  153 (446)
T PHA02946         85 NRIVAMLLTHGADP----------NACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSE  153 (446)
T ss_pred             HHHHHHHHHCcCCC----------CCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCCh
Confidence            99999999988874          4688889999999887653  788999999998865567888999996 6667888


Q ss_pred             HHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCC--HHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcC--CHHHHHHHhh
Q 038664          163 HIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSN--FVVMAKILEAKRDLINVLDKRDRNPLHYAAALG--HFEIACRLSD  238 (464)
Q Consensus       163 ~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~--~~~~v~~Ll~  238 (464)
                      ++++.|++.+.+. +..+..|.||||.|+..++  .+++++|++.+.+ ++..|.+|.||||+|+..+  +.+++++|+.
T Consensus       154 ~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad-in~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~  231 (446)
T PHA02946        154 RVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMKLGIS-PSKPDHDGNTPLHIVCSKTVKNVDIINLLLP  231 (446)
T ss_pred             HHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCCcHHHHHHHHc
Confidence            9999999988877 8888889999998877544  5888999998887 7888899999999999876  7888888885


Q ss_pred             cCCCccccccCCCCCcccccccCCc-HHHHHHHHHHCCCc-------------------cccc-ccCCCchhHHHHhcCc
Q 038664          239 EDDTLAYERDCNGQSPLHLASENGK-LSLLKRLLHSYPDS-------------------IEFL-DKKNRNILHLAAQNGH  297 (464)
Q Consensus       239 ~~~~~~~~~~~~g~tpL~~A~~~g~-~~~v~~Ll~~~~~~-------------------~~~~-d~~g~t~L~~A~~~~~  297 (464)
                       +++++ .+|..|.||||+|++.++ .++++.|+.++...                   ++.. +..|+||||+|+++|+
T Consensus       232 -gadin-~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~  309 (446)
T PHA02946        232 -STDVN-KQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGS  309 (446)
T ss_pred             -CCCCC-CCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCC
Confidence             67666 678889999999998887 47888888876531                   1111 2357799999999999


Q ss_pred             hHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCchhhHH
Q 038664          298 ANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDI  371 (464)
Q Consensus       298 ~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~~  371 (464)
                      .+++++|++..          ..|+||||+|+..++.+++++|+++ |++++.+ ..|.||+++|....+.+.+
T Consensus       310 ~eivk~Ll~~~----------~~~~t~L~~A~~~~~~~~v~~Ll~~-ga~~n~~-~~G~t~l~~a~~~~~~~~~  371 (446)
T PHA02946        310 IRCVKYLLDND----------IICEDAMYYAVLSEYETMVDYLLFN-HFSVDSV-VNGHTCMSECVRLNNPVIL  371 (446)
T ss_pred             HHHHHHHHHCC----------CccccHHHHHHHhCHHHHHHHHHHC-CCCCCCc-cccccHHHHHHHcCCHHHH
Confidence            99999999862          2579999999999999999999977 9999996 5899999999987776654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1e-48  Score=364.54  Aligned_cols=313  Identities=27%  Similarity=0.389  Sum_probs=287.3

Q ss_pred             cccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhh
Q 038664           31 ILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRK  110 (464)
Q Consensus        31 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  110 (464)
                      ....|..+++|||+|+.....+.++.|++.|++ ....+..+.+|+|+|+..|+.++++.|+++++++          +.
T Consensus        81 ~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad-~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dv----------nl  149 (929)
T KOG0510|consen   81 SYAKDSADNTPLHAAVEYNQGDKIQVLLSYGAD-TPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADV----------NL  149 (929)
T ss_pred             hhhhhcccCchhHHHhhcchHHHHHHHHhcCCC-CChhhhhccCchhhccccchHHHHHHHHHhcCCc----------cc
Confidence            345788899999999999999999999999999 7889999999999999999999999999999884          58


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHH-----hcCcCcCCCCCCCCC
Q 038664          111 QDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK-----EKLSVLDHRGPNDLT  185 (464)
Q Consensus       111 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~-----~~~~~~~~~~~~~~~  185 (464)
                      .|..|.||||.|+..++.|..+.|++.+++ +...|.+|.+|+|.|+++|..++.+.++.     .+..+ +..+..+.+
T Consensus       150 ~de~~~TpLh~A~~~~~~E~~k~Li~~~a~-~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~i-n~~~n~~~~  227 (929)
T KOG0510|consen  150 EDENGFTPLHLAARKNKVEAKKELINKGAD-PCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHI-NFDNNEKAT  227 (929)
T ss_pred             cccCCCchhhHHHhcChHHHHHHHHhcCCC-CCcccCcCCchHHHHHHhcchhhhhhhhccccchhhccc-ccccCCCCc
Confidence            899999999999999999988999999999 57889999999999999999999999998     33444 788899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCch--------------hhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCC
Q 038664          186 LLHIAIIKSNFVVMAKILEAKRD--------------LINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNG  251 (464)
Q Consensus       186 ~l~~a~~~~~~~~~~~ll~~~~~--------------~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g  251 (464)
                      |||.|+..|+.++++.+++.+..              .++..|++|.||||+|++.|+.+.++.|+..|++.+ .++.++
T Consensus       228 pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~-~kn~d~  306 (929)
T KOG0510|consen  228 PLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASIN-SKNKDE  306 (929)
T ss_pred             chhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccc-ccCCCC
Confidence            99999999999999999997743              256678999999999999999999999999999999 688999


Q ss_pred             CCcccccccCCcHHHHHHHHH-HCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhh---ccCCCCCcHHHH
Q 038664          252 QSPLHLASENGKLSLLKRLLH-SYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMIN---SSDLEGNTPLHL  327 (464)
Q Consensus       252 ~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~---~~d~~g~t~Lh~  327 (464)
                      .||||.|++.|+...++.||+ .+....+..|..|.||||.|+++|+.+++++|++.+   +...   ..|.+|+||||+
T Consensus       307 ~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~G---A~~~~~~e~D~dg~TaLH~  383 (929)
T KOG0510|consen  307 ESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKG---ALFLNMSEADSDGNTALHL  383 (929)
T ss_pred             CCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcC---hhhhcccccccCCchhhhH
Confidence            999999999999999999999 565667888999999999999999999999999994   4444   569999999999


Q ss_pred             HHHcCCchHHHHHHhccccccccccccCCChHHh
Q 038664          328 AAINNHFNIVLILARNMRVNIRATNEKKQTALAI  361 (464)
Q Consensus       328 A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~  361 (464)
                      |++.|+..+|+.|+++ |+++..+|+.|.+++++
T Consensus       384 Aa~~g~~~av~~Li~~-Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  384 AAKYGNTSAVQKLISH-GADIGVKNKKGKSAFDT  416 (929)
T ss_pred             HHHhccHHHHHHHHHc-CCceeeccccccccccc
Confidence            9999999999999987 99999999999999995

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=8.1e-47  Score=357.89  Aligned_cols=310  Identities=17%  Similarity=0.191  Sum_probs=268.6

Q ss_pred             HHHHHHH--HcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC
Q 038664            6 RVLFRAL--RRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG   83 (464)
Q Consensus         6 ~~L~~A~--~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g   83 (464)
                      ..||.++  ..++.+.++.+++. |.+++..+.+|+||||+||..|+.++|++|+++|++ ++.+|..|.||||+|+..+
T Consensus        39 ~~Lh~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd-in~~d~~g~TpLh~A~~~~  116 (446)
T PHA02946         39 HILHAYCGIKGLDERFVEELLHR-GYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGAD-PNACDKQHKTPLYYLSGTD  116 (446)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHC-cCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcC
Confidence            4666654  44577888777765 569999999999999999999999999999999999 7889999999999999866


Q ss_pred             --CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCC
Q 038664           84 --NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGL  161 (464)
Q Consensus        84 --~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~  161 (464)
                        +.+++++|+++|++.+         ...+..|.|||| |+..++.+++++|++.+++ .+..|..|+||||+|+..++
T Consensus       117 ~~~~e~v~lLl~~Gadin---------~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad-~~~~d~~G~t~Lh~A~~~~~  185 (446)
T PHA02946        117 DEVIERINLLVQYGAKIN---------NSVDEEGCGPLL-ACTDPSERVFKKIMSIGFE-ARIVDKFGKNHIHRHLMSDN  185 (446)
T ss_pred             CchHHHHHHHHHcCCCcc---------cccCCCCCcHHH-HHHCCChHHHHHHHhcccc-ccccCCCCCCHHHHHHHhcC
Confidence              4899999999998854         135889999997 6677999999999999988 57889999999999987654


Q ss_pred             --HHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcC--CHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCC-HHHHHHH
Q 038664          162 --THIACCIIKEKLSVLDHRGPNDLTLLHIAIIKS--NFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGH-FEIACRL  236 (464)
Q Consensus       162 --~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~-~~~v~~L  236 (464)
                        .+++++|++.|.++ +..+..|.||||+|+..+  +.++++.|+. +.+ ++.+|..|.||||+|+..++ .+++++|
T Consensus       186 ~~~~~v~~Ll~~Gadi-n~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gad-in~~d~~G~TpLh~A~~~~~~~~~~~~L  262 (446)
T PHA02946        186 PKASTISWMMKLGISP-SKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STD-VNKQNKFGDSPLTLLIKTLSPAHLINKL  262 (446)
T ss_pred             CCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCC-CCCCCCCCCCHHHHHHHhCChHHHHHHH
Confidence              68999999999998 888999999999999986  7889998885 655 89999999999999999988 5899999


Q ss_pred             hhcCCCccc-------------------cc-cCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcC
Q 038664          237 SDEDDTLAY-------------------ER-DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNG  296 (464)
Q Consensus       237 l~~~~~~~~-------------------~~-~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~  296 (464)
                      +.+++....                   .. ...|.||||+|++.|+.+++++|+++++        .|+||||+|+.++
T Consensus       263 l~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~--------~~~t~L~~A~~~~  334 (446)
T PHA02946        263 LSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI--------ICEDAMYYAVLSE  334 (446)
T ss_pred             HhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC--------ccccHHHHHHHhC
Confidence            998764311                   11 2357799999999999999999998764        4789999999999


Q ss_pred             chHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhc
Q 038664          297 HANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARN  343 (464)
Q Consensus       297 ~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  343 (464)
                      +.+++++|+..   ++++|.+ ..|+||||+|++.++.++++.|+++
T Consensus       335 ~~~~v~~Ll~~---ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~  377 (446)
T PHA02946        335 YETMVDYLLFN---HFSVDSV-VNGHTCMSECVRLNNPVILSKLMLH  377 (446)
T ss_pred             HHHHHHHHHHC---CCCCCCc-cccccHHHHHHHcCCHHHHHHHHhc
Confidence            99999999988   6788885 5899999999999999999999974

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.9e-46  Score=355.73  Aligned_cols=328  Identities=21%  Similarity=0.232  Sum_probs=283.8

Q ss_pred             ccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC
Q 038664            4 VARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG   83 (464)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g   83 (464)
                      |+..|..|+..||++.++.+++..+..++..+..|.||||.|+..|+.++|++|++.|++ ++..+..|.||||+|+..|
T Consensus         1 ~~~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~-~n~~~~~~~t~L~~A~~~~   79 (434)
T PHA02874          1 ASQDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGAD-INHINTKIPHPLLTAIKIG   79 (434)
T ss_pred             CcHHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcC
Confidence            467899999999999999999988877888888999999999999999999999999998 7788999999999999999


Q ss_pred             CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHH
Q 038664           84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTH  163 (464)
Q Consensus        84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~  163 (464)
                      +.+++++|+++|++...                    .+....+.++++.|++.+.+ ++..+..|.||||+|+..|+.+
T Consensus        80 ~~~iv~~Ll~~g~~~~~--------------------~~~~~~~~~~i~~ll~~g~d-~n~~~~~g~T~Lh~A~~~~~~~  138 (434)
T PHA02874         80 AHDIIKLLIDNGVDTSI--------------------LPIPCIEKDMIKTILDCGID-VNIKDAELKTFLHYAIKKGDLE  138 (434)
T ss_pred             CHHHHHHHHHCCCCCCc--------------------chhccCCHHHHHHHHHCcCC-CCCCCCCCccHHHHHHHCCCHH
Confidence            99999999998876430                    12234567899999999988 4677889999999999999999


Q ss_pred             HHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCc
Q 038664          164 IACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTL  243 (464)
Q Consensus       164 ~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~  243 (464)
                      ++++|++.+.++ +..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.|++.
T Consensus       139 ~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i  216 (434)
T PHA02874        139 SIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAY-ANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI  216 (434)
T ss_pred             HHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence            999999999887 88889999999999999999999999999987 7888999999999999999999999999999987


Q ss_pred             cccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcC-chHHHHHHhcCcchhhhhhccCCCCC
Q 038664          244 AYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNG-HANVVVFISKLPEIEDMINSSDLEGN  322 (464)
Q Consensus       244 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~-~~~~~~~L~~~~~~~~~~~~~d~~g~  322 (464)
                      . .++..|.||||.|+..+. +.+++|+ .+.+ ++.+|..|+||||+|+..+ +.+++++|++.   +++++.+|..|+
T Consensus       217 ~-~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~-in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~---gad~n~~d~~g~  289 (434)
T PHA02874        217 M-NKCKNGFTPLHNAIIHNR-SAIELLI-NNAS-INDQDIDGSTPLHHAINPPCDIDIIDILLYH---KADISIKDNKGE  289 (434)
T ss_pred             c-CCCCCCCCHHHHHHHCCh-HHHHHHH-cCCC-CCCcCCCCCCHHHHHHhcCCcHHHHHHHHHC---cCCCCCCCCCCC
Confidence            7 578889999999998765 5666666 4555 5889999999999999876 78999999987   788999999999


Q ss_pred             cHHHHHHHcC-CchHHHHHHhccccccccccccC-CChHHhhc
Q 038664          323 TPLHLAAINN-HFNIVLILARNMRVNIRATNEKK-QTALAIVQ  363 (464)
Q Consensus       323 t~Lh~A~~~~-~~~~v~~Ll~~~~~d~~~~n~~g-~t~l~~a~  363 (464)
                      ||||+|++.+ +..+++.|+.+ ++.++..+..+ .+++..+.
T Consensus       290 TpL~~A~~~~~~~~~ik~ll~~-~~~~~~~~~~~~~~~~~~~~  331 (434)
T PHA02874        290 NPIDTAFKYINKDPVIKDIIAN-AVLIKEADKLKDSDFLEHIE  331 (434)
T ss_pred             CHHHHHHHhCCccHHHHHHHHh-cCchhhccccchhHHHHHHH
Confidence            9999999987 67788988876 66655554444 34444443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=6.9e-45  Score=354.04  Aligned_cols=349  Identities=14%  Similarity=0.108  Sum_probs=273.2

Q ss_pred             HcCCHHHHHHHHhhcCCCcccc-cCCCCchhHHHHh--cCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCC--HHH
Q 038664           13 RRGDAATVRESARLNGNGILDM-SQNRDTALHIAAR--FGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGN--FGV   87 (464)
Q Consensus        13 ~~g~~~~~~~ll~~~~~~~~~~-~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~--~~~   87 (464)
                      +.++.+.++.|++.+..+++.. +..|.||||.|+.  +++.+++++|+++|++ ++.+|..|.||||+|++.|+  .++
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GAD-VN~kD~~G~TPLH~Aa~~g~~~~eI  229 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVN-VNLQNNHLITPLHTYLITGNVCASV  229 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCCCHHH
Confidence            5689999998887663688877 8899999999864  4679999999999999 88899999999999999995  489


Q ss_pred             HHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHH---HcCCHHHHHHHHHhCCccccccccCCCcHHH---HHHHcCC
Q 038664           88 AKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAV---RKCDGKMAFTMIRKDPELICYINKAGQSPLS---LAIDAGL  161 (464)
Q Consensus        88 v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~---~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~---~A~~~g~  161 (464)
                      |++|+++|++.+          .++..|.||||+|+   ..++.++++.|++..... ..  .....+++   .|+..|+
T Consensus       230 VklLLe~GADVN----------~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n-~~--~~~~~~L~~~i~AA~~g~  296 (764)
T PHA02716        230 IKKIIELGGDMD----------MKCVNGMSPIMTYIINIDNINPEITNIYIESLDGN-KV--KNIPMILHSYITLARNID  296 (764)
T ss_pred             HHHHHHcCCCCC----------CCCCCCCCHHHHHHHhhhccCHHHHHHHHHhcccc-cc--ccchhhhHHHHHHHHcCC
Confidence            999999999854          78999999999886   467899999998874331 11  11122333   4788999


Q ss_pred             HHHHHHHHHhcCcCcCCCCCCCCCHHHHHHH--cCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHH-------------
Q 038664          162 THIACCIIKEKLSVLDHRGPNDLTLLHIAII--KSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAA-------------  226 (464)
Q Consensus       162 ~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~-------------  226 (464)
                      .+++++|+++|+++ +.++..|+||||+|+.  .++.+++++|++.+.+ ++.+|..|+||||+|+.             
T Consensus       297 leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD-IN~kD~~G~TPLH~A~~~lav~~~ld~~~~  374 (764)
T PHA02716        297 ISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND-LNEPDNIGNTVLHTYLSMLSVVNILDPETD  374 (764)
T ss_pred             HHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC-CccCCCCCCCHHHHHHHhhhhhcccccccc
Confidence            99999999999987 8889999999998764  4678999999999987 89999999999999875             


Q ss_pred             -cCCHHHHHHHhhcCCCccccccCCCCCcccc----cccCCcHHHHHHHHHHCCCccccc--------ccCCCch--hHH
Q 038664          227 -LGHFEIACRLSDEDDTLAYERDCNGQSPLHL----ASENGKLSLLKRLLHSYPDSIEFL--------DKKNRNI--LHL  291 (464)
Q Consensus       227 -~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~----A~~~g~~~~v~~Ll~~~~~~~~~~--------d~~g~t~--L~~  291 (464)
                       .++.+++++|+++|+++. .++..|+||||.    |...++.+++++|++.+... ...        +..+.+|  +|.
T Consensus       375 ~~~~~eVVklLL~~GADIn-~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~-~~~~~~~q~ll~~~d~~~~~lhh  452 (764)
T PHA02716        375 NDIRLDVIQCLISLGADIT-AVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLN-MVKHRILQDLLIRVDDTPCIIHH  452 (764)
T ss_pred             ccChHHHHHHHHHCCCCCC-CcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchh-hhhhhhhhhhhhccCcchhhHHH
Confidence             368999999999999988 689999999994    33457899999999876532 111        1223333  555


Q ss_pred             HHhcCchHHHHHHhcCc---------------chhhhhhccCCCCCcHHHHHHHcCCchH-----HHHHHhccccccccc
Q 038664          292 AAQNGHANVVVFISKLP---------------EIEDMINSSDLEGNTPLHLAAINNHFNI-----VLILARNMRVNIRAT  351 (464)
Q Consensus       292 A~~~~~~~~~~~L~~~~---------------~~~~~~~~~d~~g~t~Lh~A~~~~~~~~-----v~~Ll~~~~~d~~~~  351 (464)
                      ++..+..+...++....               ..+..+|..|..|+||||+|+..|+.++     +++|++. |+|++.+
T Consensus       453 ~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~-GADIN~~  531 (764)
T PHA02716        453 IIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSI-QYNINIP  531 (764)
T ss_pred             HHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhC-CCCCccc
Confidence            55554443333322110               1134567889999999999999988754     5999976 9999999


Q ss_pred             cccCCChHHhhccCchh-----h--HHHhhcCCCCC
Q 038664          352 NEKKQTALAIVQPSLHQ-----N--DILEGHGGSAS  380 (464)
Q Consensus       352 n~~g~t~l~~a~~~~~~-----~--~~l~~~g~~~~  380 (464)
                      |++|+|||++|..+++.     +  ..+.++|+.+.
T Consensus       532 d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~  567 (764)
T PHA02716        532 TKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVD  567 (764)
T ss_pred             CCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcc
Confidence            99999999999987753     2  34666676544

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-44  Score=345.73  Aligned_cols=296  Identities=22%  Similarity=0.315  Sum_probs=267.5

Q ss_pred             chhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHH
Q 038664           40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPL  119 (464)
Q Consensus        40 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L  119 (464)
                      ..|+.|+..|+.+.++.|++.++..++..+..|.||||.|+..|+.++|++|++.|++.+          ..+..|.|||
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n----------~~~~~~~t~L   72 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADIN----------HINTKIPHPL   72 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC----------CCCCCCCCHH
Confidence            368899999999999999998877788888999999999999999999999999998844          6788899999


Q ss_pred             HHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHH
Q 038664          120 HNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVM  199 (464)
Q Consensus       120 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  199 (464)
                      |+|+..|+.+++++|++.|++...           .+......++++.+++.+.++ +..+..|.||||+|+..++.+++
T Consensus        73 ~~A~~~~~~~iv~~Ll~~g~~~~~-----------~~~~~~~~~~i~~ll~~g~d~-n~~~~~g~T~Lh~A~~~~~~~~v  140 (434)
T PHA02874         73 LTAIKIGAHDIIKLLIDNGVDTSI-----------LPIPCIEKDMIKTILDCGIDV-NIKDAELKTFLHYAIKKGDLESI  140 (434)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCc-----------chhccCCHHHHHHHHHCcCCC-CCCCCCCccHHHHHHHCCCHHHH
Confidence            999999999999999999877421           123445788999999999987 88899999999999999999999


Q ss_pred             HHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCccc
Q 038664          200 AKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIE  279 (464)
Q Consensus       200 ~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  279 (464)
                      ++|++.+++ ++..|..|.||||+|+..++.+++++|++.|++.+ ..+..|.||||+|+..|+.+++++|++.+++ ++
T Consensus       141 ~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n-~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~-i~  217 (434)
T PHA02874        141 KMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN-VKDNNGESPLHNAAEYGDYACIKLLIDHGNH-IM  217 (434)
T ss_pred             HHHHhCCCC-CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-Cc
Confidence            999999988 78999999999999999999999999999999887 5788999999999999999999999999988 58


Q ss_pred             ccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcC-CchHHHHHHhccccccccccccCCCh
Q 038664          280 FLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINN-HFNIVLILARNMRVNIRATNEKKQTA  358 (464)
Q Consensus       280 ~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~-~~~~v~~Ll~~~~~d~~~~n~~g~t~  358 (464)
                      ..+..|.||||.|+..+. +.+++|+.    +.+++.+|..|+||||+|++.+ +.+++++|+++ |+|++.+|..|+||
T Consensus       218 ~~~~~g~TpL~~A~~~~~-~~i~~Ll~----~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~-gad~n~~d~~g~Tp  291 (434)
T PHA02874        218 NKCKNGFTPLHNAIIHNR-SAIELLIN----NASINDQDIDGSTPLHHAINPPCDIDIIDILLYH-KADISIKDNKGENP  291 (434)
T ss_pred             CCCCCCCCHHHHHHHCCh-HHHHHHHc----CCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHC-cCCCCCCCCCCCCH
Confidence            889999999999999876 45666653    5678999999999999999975 78999999976 99999999999999


Q ss_pred             HHhhccCc
Q 038664          359 LAIVQPSL  366 (464)
Q Consensus       359 l~~a~~~~  366 (464)
                      +++|....
T Consensus       292 L~~A~~~~  299 (434)
T PHA02874        292 IDTAFKYI  299 (434)
T ss_pred             HHHHHHhC
Confidence            99998654

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.8e-43  Score=336.17  Aligned_cols=360  Identities=14%  Similarity=0.121  Sum_probs=284.8

Q ss_pred             ccHHHHHHHHcC---CHHHHHHHHhhcCCCcccccCCCCchhHHHHhcC--CHHHHHHHHHhCCcc-ccccccCCCCHHH
Q 038664            4 VARVLFRALRRG---DAATVRESARLNGNGILDMSQNRDTALHIAARFG--HKNVVMEILELRPDL-VSVENHKSETPMH   77 (464)
Q Consensus         4 ~~~~L~~A~~~g---~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~-~~~~~~~g~t~L~   77 (464)
                      -.++||.|+..|   +.|.++.||+ .|++++..|..|+||||+|+..+  +.++|++|++.|++. ++..+..+.+|||
T Consensus        41 G~TaLh~A~~~~~~~~~eivklLLs-~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~  119 (672)
T PHA02730         41 GNNALHCYVSNKCDTDIKIVRLLLS-RGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLY  119 (672)
T ss_pred             CCcHHHHHHHcCCcCcHHHHHHHHh-CCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHH
Confidence            457999999987   4898877774 66799999999999999999876  799999999996541 3557777899999


Q ss_pred             HHHH--hCCHHHHHHHhc-ccCCCCCCcchHHHHhhc-CCCCCcHHHHHHHcCCHHHHHHHHHhCCccc------ccccc
Q 038664           78 VAAR--AGNFGVAKIFMR-PHGNGNNTGTFDDILRKQ-DEEGNTPLHNAVRKCDGKMAFTMIRKDPELI------CYINK  147 (464)
Q Consensus        78 ~A~~--~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~------~~~~~  147 (464)
                      .++.  +++.+++++|++ .+.+++..      .+.. +..|.+|++++...++.+++++|+++|+++.      ...+.
T Consensus       120 ~y~~s~n~~~~~vk~Li~~~~~~~~~~------~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~  193 (672)
T PHA02730        120 SYMSSDNIDLRLLKYLIVDKRIRPSKN------TNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDS  193 (672)
T ss_pred             HHHHhcCCcHHHHHHHHHhcCCChhhh------hhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccC
Confidence            9988  888999999996 44453300      0111 2378999999999999999999999999963      11233


Q ss_pred             CCCcH-HHHH------HHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHH--HHHcCCHHHHHHHHH--------------
Q 038664          148 AGQSP-LSLA------IDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHI--AIIKSNFVVMAKILE--------------  204 (464)
Q Consensus       148 ~g~t~-l~~A------~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~--a~~~~~~~~~~~ll~--------------  204 (464)
                      ...+| ||+.      ...++.+++++|+++|+++ +.++..|.||||+  +...++.++++.|++              
T Consensus       194 ~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadI-N~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~  272 (672)
T PHA02730        194 DRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSI-HGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQP  272 (672)
T ss_pred             CccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccch
Confidence            34444 4433      4567899999999999998 9999999999995  555677999999999              


Q ss_pred             ------------------hCchhhhh--------------------hcCCCCc---------------------HHHHHH
Q 038664          205 ------------------AKRDLINV--------------------LDKRDRN---------------------PLHYAA  225 (464)
Q Consensus       205 ------------------~~~~~~~~--------------------~~~~g~t---------------------~L~~a~  225 (464)
                                        .+.+ ...                    .+..|.+                     .||.-.
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~d-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~  351 (672)
T PHA02730        273 YIRGVLADYLNKRFRVTPYNVD-MEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYL  351 (672)
T ss_pred             hhhhhHHHhhhhhhhcccCCcc-hHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHH
Confidence                              3333 222                    4555544                     667666


Q ss_pred             HcC---CHHHHHHHhhcCCCccccccCCCCCcccccccCCc----HHHHHHHHHHCCC-cccccccCCCchhHH---HHh
Q 038664          226 ALG---HFEIACRLSDEDDTLAYERDCNGQSPLHLASENGK----LSLLKRLLHSYPD-SIEFLDKKNRNILHL---AAQ  294 (464)
Q Consensus       226 ~~~---~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~-~~~~~d~~g~t~L~~---A~~  294 (464)
                      +.+   +.+++++|+++|++.+. . ..|.||||+|+..++    .+++++|+++|++ +++..|..|+||||.   |..
T Consensus       352 ~~~~~v~ieIvelLIs~GAdIN~-k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~  429 (672)
T PHA02730        352 HYGDMVSIPILRCMLDNGATMDK-T-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRF  429 (672)
T ss_pred             hcCCcCcHHHHHHHHHCCCCCCc-C-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHh
Confidence            655   68999999999999984 3 789999999998875    8999999999974 478999999999994   333


Q ss_pred             cC---------chHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccc-cCCChHHhhcc
Q 038664          295 NG---------HANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNE-KKQTALAIVQP  364 (464)
Q Consensus       295 ~~---------~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~-~g~t~l~~a~~  364 (464)
                      .+         ..+++++|+..   ++++|.+|..|+||||+|+..++.+++++|+++ |++++.++. .|.||++.|..
T Consensus       430 ~n~~~~~~e~~~~~ivk~LIs~---GADINakD~~G~TPLh~Aa~~~~~eive~LI~~-GAdIN~~d~~~g~TaL~~Aa~  505 (672)
T PHA02730        430 NNCGYHCYETILIDVFDILSKY---MDDIDMIDNENKTLLYYAVDVNNIQFARRLLEY-GASVNTTSRSIINTAIQKSSY  505 (672)
T ss_pred             ccccccccchhHHHHHHHHHhc---ccchhccCCCCCCHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCcCCcCHHHHHHH
Confidence            32         23568999988   788999999999999999999999999999976 999999997 59999999985


Q ss_pred             C--ch--hhHHHhhcCCC
Q 038664          365 S--LH--QNDILEGHGGS  378 (464)
Q Consensus       365 ~--~~--~~~~l~~~g~~  378 (464)
                      .  ++  ...++.++|+.
T Consensus       506 ~~~~~~eIv~~LLs~ga~  523 (672)
T PHA02730        506 RRENKTKLVDLLLSYHPT  523 (672)
T ss_pred             hhcCcHHHHHHHHHcCCC
Confidence            3  33  33457777764

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.3e-44  Score=335.51  Aligned_cols=350  Identities=21%  Similarity=0.211  Sum_probs=304.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHH
Q 038664            7 VLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFG   86 (464)
Q Consensus         7 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~   86 (464)
                      .+...+..+..+-...++-+........+..|+|++|.|+..+..      +..-.. ....|..|.||||+|+.....+
T Consensus        30 d~~~~~~~~~~dD~~tli~~kns~~~~~~~~gd~~~~~~~~~~y~------~~~~~~-~~a~D~~~n~~l~~a~~~~~~~  102 (929)
T KOG0510|consen   30 DLDSQALADTLDDRHTLILEKNSSTPGKRAFGDTELHHASARNYI------LSKLAI-SYAKDSADNTPLHAAVEYNQGD  102 (929)
T ss_pred             HHhHHHHHhhHHHHHHHHHHhccccchhhhhchhHHHHHHhhcch------hhhhhh-hhhhhcccCchhHHHhhcchHH
Confidence            344445555555555555555556777888999999999998865      333333 4567889999999999999999


Q ss_pred             HHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHH
Q 038664           87 VAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIAC  166 (464)
Q Consensus        87 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~  166 (464)
                      .++.|++.|++..          ..+..+.+|+|+|+..++.+..+.|++.+.+ ++..+..+.||||.|+..++.+..+
T Consensus       103 ~i~~Lls~gad~~----------~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~d-vnl~de~~~TpLh~A~~~~~~E~~k  171 (929)
T KOG0510|consen  103 KIQVLLSYGADTP----------LRNLNKNAPLHLAADSGNYSCLKLLLDYGAD-VNLEDENGFTPLHLAARKNKVEAKK  171 (929)
T ss_pred             HHHHHHhcCCCCC----------hhhhhccCchhhccccchHHHHHHHHHhcCC-ccccccCCCchhhHHHhcChHHHHH
Confidence            9999999999854          7888999999999999999999999999977 6788999999999999999999889


Q ss_pred             HHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHH-----hCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCC
Q 038664          167 CIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILE-----AKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDD  241 (464)
Q Consensus       167 ~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-----~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~  241 (464)
                      .|++.++++ ...+.+|..|+|.|++++..++++.++.     +... ++..+.++.||||.|+..|+.++++.+++.+.
T Consensus       172 ~Li~~~a~~-~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~-in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~  249 (929)
T KOG0510|consen  172 ELINKGADP-CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTH-INFDNNEKATPLHLAVEGGDIEMLKMCLQNGK  249 (929)
T ss_pred             HHHhcCCCC-CcccCcCCchHHHHHHhcchhhhhhhhccccchhhcc-cccccCCCCcchhhhhhcCCHHHHHHHHhCcc
Confidence            999999998 8889999999999999999999999998     3333 78889999999999999999999999999987


Q ss_pred             Cccc--------------cccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcC
Q 038664          242 TLAY--------------ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL  307 (464)
Q Consensus       242 ~~~~--------------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~  307 (464)
                      ....              ..|++|.||||+|++.|+.+.++.|+..|++ ++.++.++.||||.|+.+|+...++-|++ 
T Consensus       250 ~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~-I~~kn~d~~spLH~AA~yg~~ntv~rLL~-  327 (929)
T KOG0510|consen  250 KIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS-INSKNKDEESPLHFAAIYGRINTVERLLQ-  327 (929)
T ss_pred             ccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc-ccccCCCCCCchHHHHHcccHHHHHHHHh-
Confidence            5433              2578999999999999999999999999999 59999999999999999999999999999 


Q ss_pred             cchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccc---cccccCCChHHhhccCchhhH--HHhhcCCCC
Q 038664          308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIR---ATNEKKQTALAIVQPSLHQND--ILEGHGGSA  379 (464)
Q Consensus       308 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~---~~n~~g~t~l~~a~~~~~~~~--~l~~~g~~~  379 (464)
                      ......+|..|..|+||||+|++.||..+++.|+.+ |++..   ..|.+|.||||.|...++...  .+..+|+..
T Consensus       328 ~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~-GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  328 ESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK-GALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI  403 (929)
T ss_pred             CcCccccccccccCCCchhhhhhcCHHHHHHHHHhc-ChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence            334577899999999999999999999999999976 88766   459999999999998887655  477888765

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.2e-43  Score=332.98  Aligned_cols=352  Identities=16%  Similarity=0.116  Sum_probs=275.9

Q ss_pred             HHHHHHHHhhcCCCcc-cccCCCCchhHHHHhcC---CHHHHHHHHHhCCccccccccCCCCHHHHHHHhC--CHHHHHH
Q 038664           17 AATVRESARLNGNGIL-DMSQNRDTALHIAARFG---HKNVVMEILELRPDLVSVENHKSETPMHVAARAG--NFGVAKI   90 (464)
Q Consensus        17 ~~~~~~ll~~~~~~~~-~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~   90 (464)
                      ...++..++... +++ ..|.+|+||||+|+..|   +.++|++|+++|++ ++.+|..|+||||+|+..+  +.|++++
T Consensus        20 ~~~~~~~~~~~~-~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAd-in~kD~~G~TPLh~Aa~~~~~~~eIv~~   97 (672)
T PHA02730         20 YKKIKLEIETCH-NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVE-RLCRNNEGLTPLGVYSKRKYVKSQIVHL   97 (672)
T ss_pred             HHHHHHHHHHhc-chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCC-CcccCCCCCChHHHHHHcCCCcHHHHHH
Confidence            345555665543 666 78889999999999997   59999999999999 7889999999999999976  7999999


Q ss_pred             HhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHH--cCCHHHHHHHHHh-CCccccccc----cCCCcHHHHHHHcCCHH
Q 038664           91 FMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVR--KCDGKMAFTMIRK-DPELICYIN----KAGQSPLSLAIDAGLTH  163 (464)
Q Consensus        91 Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~--~~~~~~~~~Ll~~-~~~~~~~~~----~~g~t~l~~A~~~g~~~  163 (464)
                      |++.|++..        .+..+..+.+||+.++.  +++.+++++|+.. +.++....+    ..|.+|++++...++.+
T Consensus        98 Ll~~~~~~~--------~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~e  169 (672)
T PHA02730         98 LISSYSNAS--------NELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPE  169 (672)
T ss_pred             HHhcCCCCC--------cccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchH
Confidence            999987653        33566778999999888  8999999999974 444322212    37899999999999999


Q ss_pred             HHHHHHHhcCcCc------C-CCCCCCCCHHHHHH------HcCCHHHHHHHHHhCchhhhhhcCCCCcHHHH--HHHcC
Q 038664          164 IACCIIKEKLSVL------D-HRGPNDLTLLHIAI------IKSNFVVMAKILEAKRDLINVLDKRDRNPLHY--AAALG  228 (464)
Q Consensus       164 ~~~~Ll~~~~~~~------~-~~~~~~~~~l~~a~------~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~--a~~~~  228 (464)
                      ++++|+++|+++.      . ...+...+.||+++      .+.+.++++.|+++|++ ++.+|.+|.||||+  +...+
T Consensus       170 IvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Gad-IN~kd~~G~TpLh~~~~~~~~  248 (672)
T PHA02730        170 VLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVS-IHGRDEGGSLPIQYYWSCSTI  248 (672)
T ss_pred             HHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCcc
Confidence            9999999999872      1 22233345556443      45688999999999998 89999999999995  55567


Q ss_pred             CHHHHHHHhh--------------------------------cCCCccc-------------------cccCCCCC----
Q 038664          229 HFEIACRLSD--------------------------------EDDTLAY-------------------ERDCNGQS----  253 (464)
Q Consensus       229 ~~~~v~~Ll~--------------------------------~~~~~~~-------------------~~~~~g~t----  253 (464)
                      +.|++++|++                                +|.+...                   ..+..|.+    
T Consensus       249 ~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~  328 (672)
T PHA02730        249 DIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYII  328 (672)
T ss_pred             cHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHH
Confidence            7999999999                                5555421                   03444433    


Q ss_pred             -----------------cccccccCC---cHHHHHHHHHHCCCcccccccCCCchhHHHHhcCc----hHHHHHHhcCcc
Q 038664          254 -----------------PLHLASENG---KLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGH----ANVVVFISKLPE  309 (464)
Q Consensus       254 -----------------pL~~A~~~g---~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~----~~~~~~L~~~~~  309 (464)
                                       .||.-.+++   +.+++++|+++|++ ++.. ..|+||||+|+..++    .+++++|++.+.
T Consensus       329 ~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAd-IN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga  406 (672)
T PHA02730        329 DNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGAT-MDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNG  406 (672)
T ss_pred             HHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCC-CCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCC
Confidence                             444444444   69999999999999 4764 799999999998875    899999998731


Q ss_pred             hhhhhhccCCCCCcHHHH---HHHcC---------CchHHHHHHhccccccccccccCCChHHhhccCchhhH--HHhhc
Q 038664          310 IEDMINSSDLEGNTPLHL---AAINN---------HFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQND--ILEGH  375 (464)
Q Consensus       310 ~~~~~~~~d~~g~t~Lh~---A~~~~---------~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~--~l~~~  375 (464)
                       ..++|.+|..|.||||.   |...+         ..+++++|+++ |+|++.+|..|+|||++|...++.+.  +|..+
T Consensus       407 -~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~-GADINakD~~G~TPLh~Aa~~~~~eive~LI~~  484 (672)
T PHA02730        407 -HMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKY-MDDIDMIDNENKTLLYYAVDVNNIQFARRLLEY  484 (672)
T ss_pred             -CccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhc-ccchhccCCCCCCHHHHHHHhCCHHHHHHHHHC
Confidence             13689999999999994   33332         12568999976 99999999999999999997766544  58899


Q ss_pred             CCCCCCCC
Q 038664          376 GGSASGTG  383 (464)
Q Consensus       376 g~~~~~~~  383 (464)
                      |+++....
T Consensus       485 GAdIN~~d  492 (672)
T PHA02730        485 GASVNTTS  492 (672)
T ss_pred             CCCCCCCC
Confidence            99875544

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3e-42  Score=335.52  Aligned_cols=282  Identities=20%  Similarity=0.252  Sum_probs=179.2

Q ss_pred             HHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcC---CHHHHHHHHHhCCccccccccCCCCHHHHHHHhC-C
Q 038664            9 FRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFG---HKNVVMEILELRPDLVSVENHKSETPMHVAARAG-N   84 (464)
Q Consensus         9 ~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g-~   84 (464)
                      +.++..++.+.++.+++. |.+++..+..|.||||+|+..|   +.++++.|++.|++ ++.++..|.||||+|+..| +
T Consensus        19 ~~~~~~~~~~~v~~Ll~~-ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad-in~~~~~g~TpLh~A~~~~~~   96 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAA-GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD-VNAPERCGFTPLHLYLYNATT   96 (471)
T ss_pred             HHcCCCCCHHHHHHHHHc-CCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCc
Confidence            344667777777777754 4577777777778888887777   77778888877777 6667777778888887777 4


Q ss_pred             HHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHH--HcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcC--
Q 038664           85 FGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAV--RKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAG--  160 (464)
Q Consensus        85 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g--  160 (464)
                      .+++++|+++|++.          +.++..|.||||+|+  ..++.+++++|++.|++ ++..+..|.||||+|+..+  
T Consensus        97 ~~iv~lLl~~ga~i----------n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad-~~~~d~~g~tpL~~a~~~~~~  165 (471)
T PHA03095         97 LDVIKLLIKAGADV----------NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD-VNALDLYGMTPLAVLLKSRNA  165 (471)
T ss_pred             HHHHHHHHHcCCCC----------CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCC
Confidence            77777777777763          366777777777777  44566777777777776 3556677777777766654  


Q ss_pred             CHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHc--CCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCH--HHHHHH
Q 038664          161 LTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIK--SNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHF--EIACRL  236 (464)
Q Consensus       161 ~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~--~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~--~~v~~L  236 (464)
                      +.++++.|++.+.+. ...+..|.||||+++..  ++.++++.|++.+.+ ++..|..|.||||+|+..|+.  .+++.|
T Consensus       166 ~~~iv~~Ll~~g~~~-~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~-~~~~d~~g~tpLh~Aa~~~~~~~~~v~~l  243 (471)
T PHA03095        166 NVELLRLLIDAGADV-YAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCD-PAATDMLGNTPLHSMATGSSCKRSLVLPL  243 (471)
T ss_pred             CHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCchHHHHHHH
Confidence            456666666666665 33355666666665543  455555666655555 555555666666666655543  345555


Q ss_pred             hhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcC
Q 038664          237 SDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL  307 (464)
Q Consensus       237 l~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~  307 (464)
                      ++.|.+++ .+|..|+||||+|+..|+.+++++|++.|++ ++.+|.+|+||||+|+.+|+.+++++|++.
T Consensus       244 l~~g~din-~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad-~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~  312 (471)
T PHA03095        244 LIAGISIN-ARNRYGQTPLHYAAVFNNPRACRRLIALGAD-INAVSSDGNTPLSLMVRNNNGRAVRAALAK  312 (471)
T ss_pred             HHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCCHHHHHHHHHh
Confidence            55555544 3445555555555555555555555555555 255555555555555555555555555544

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.8e-42  Score=337.08  Aligned_cols=299  Identities=20%  Similarity=0.218  Sum_probs=269.4

Q ss_pred             HHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC---CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHH
Q 038664           43 HIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG---NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPL  119 (464)
Q Consensus        43 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L  119 (464)
                      ..++..++.++|++|++.|++ ++..+..|.||||+|+..+   +.+++++|++.|++.          +.++..|.|||
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~-vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi----------n~~~~~g~TpL   87 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGAD-VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV----------NAPERCGFTPL   87 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCC-cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC----------CCCCCCCCCHH
Confidence            456788899999999999999 7889999999999999998   999999999999984          47888999999


Q ss_pred             HHHHHcC-CHHHHHHHHHhCCccccccccCCCcHHHHHH--HcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcC--
Q 038664          120 HNAVRKC-DGKMAFTMIRKDPELICYINKAGQSPLSLAI--DAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKS--  194 (464)
Q Consensus       120 ~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~--~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~--  194 (464)
                      |+|+..+ +.+++++|++.|++ ++..+..|.||||+|+  ..++.+++++|++.|.++ +..+..|.||||.|+..+  
T Consensus        88 h~A~~~~~~~~iv~lLl~~ga~-in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~  165 (471)
T PHA03095         88 HLYLYNATTLDVIKLLIKAGAD-VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNA  165 (471)
T ss_pred             HHHHHcCCcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCC
Confidence            9999999 59999999999998 5778999999999999  556889999999999997 888999999999998876  


Q ss_pred             CHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHc--CCHHHHHHHhhcCCCccccccCCCCCcccccccCCcH--HHHHHH
Q 038664          195 NFVVMAKILEAKRDLINVLDKRDRNPLHYAAAL--GHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKL--SLLKRL  270 (464)
Q Consensus       195 ~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~--~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~--~~v~~L  270 (464)
                      +.++++.|++.+.+ ++..+..|.||||+++..  ++.++++.|++.|+++. .+|..|.||||+|+..|+.  .+++.|
T Consensus       166 ~~~iv~~Ll~~g~~-~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~-~~d~~g~tpLh~Aa~~~~~~~~~v~~l  243 (471)
T PHA03095        166 NVELLRLLIDAGAD-VYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPA-ATDMLGNTPLHSMATGSSCKRSLVLPL  243 (471)
T ss_pred             CHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHhcCCchHHHHHHH
Confidence            68999999999988 566699999999999875  78899999999999988 6899999999999999875  688899


Q ss_pred             HHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhcccccccc
Q 038664          271 LHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRA  350 (464)
Q Consensus       271 l~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~  350 (464)
                      ++.+.+ ++.+|..|+||||+|+..|+.+++++|++.   |++++.+|..|+||||+|+..|+.++++.|+.. +++++.
T Consensus       244 l~~g~d-in~~d~~g~TpLh~A~~~~~~~~v~~LL~~---gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~-~~~~~~  318 (471)
T PHA03095        244 LIAGIS-INARNRYGQTPLHYAAVFNNPRACRRLIAL---GADINAVSSDGNTPLSLMVRNNNGRAVRAALAK-NPSAET  318 (471)
T ss_pred             HHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHh-CCCHHH
Confidence            999888 599999999999999999999999999988   789999999999999999999999999999976 888876


Q ss_pred             ccccCCChHHh
Q 038664          351 TNEKKQTALAI  361 (464)
Q Consensus       351 ~n~~g~t~l~~  361 (464)
                      ......++...
T Consensus       319 ~~~~~~~~~~~  329 (471)
T PHA03095        319 VAATLNTASVA  329 (471)
T ss_pred             HHHHHHHHhhc
Confidence            65544444333

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.4e-41  Score=328.33  Aligned_cols=356  Identities=15%  Similarity=0.097  Sum_probs=227.0

Q ss_pred             cHHHHHHHHc---CCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHH----HHHHHHHhCCccccccccCCCCHHH
Q 038664            5 ARVLFRALRR---GDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKN----VVMEILELRPDLVSVENHKSETPMH   77 (464)
Q Consensus         5 ~~~L~~A~~~---g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~~~~~g~t~L~   77 (464)
                      .++||.|+..   |+.+.++.||+ .|++++..+..|+||||+|+..|+.+    +++.|++.+.. .+..+  ..+++|
T Consensus        33 ~t~Lh~a~~~~~~~~~~~v~~Ll~-~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~-~n~~~--~~~~~~  108 (661)
T PHA02917         33 NNALHAYLFNEHCNNVEVVKLLLD-SGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGY-SNIND--FNIFSY  108 (661)
T ss_pred             CcHHHHHHHhhhcCcHHHHHHHHH-CCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCC-CCCCC--cchHHH
Confidence            4678886554   77888877775 44577777788888888888877743    34555554332 12111  225555


Q ss_pred             HHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHH--HcCCHHHHHHHHHhCCcccc--ccccCC----
Q 038664           78 VAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAV--RKCDGKMAFTMIRKDPELIC--YINKAG----  149 (464)
Q Consensus        78 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~~~~~~~--~~~~~g----  149 (464)
                      .|+..|+.++|++|+++|++.          +.+|..|.||||.++  ..|+.+++++|+++|+++..  ..+..|    
T Consensus       109 ~a~~~~~~e~vk~Ll~~Gadi----------n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~  178 (661)
T PHA02917        109 MKSKNVDVDLIKVLVEHGFDL----------SVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYD  178 (661)
T ss_pred             HHhhcCCHHHHHHHHHcCCCC----------CccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccc
Confidence            666666677777777766663          356777777777543  45677777777777776431  111222    


Q ss_pred             -------CcHHHHHHH-----------cCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCH--HHHHHHHHhCchh
Q 038664          150 -------QSPLSLAID-----------AGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNF--VVMAKILEAKRDL  209 (464)
Q Consensus       150 -------~t~l~~A~~-----------~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~--~~~~~ll~~~~~~  209 (464)
                             .||||+|+.           .++.+++++|+++|+++ +..+..|.||||+|+.+++.  ++++.|++ +.+.
T Consensus       179 ~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadv-n~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~  256 (661)
T PHA02917        179 DYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKP-SSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDN  256 (661)
T ss_pred             cccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCc-ccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcc
Confidence                   477777765           34677777777777776 77777777777777777764  57777754 4432


Q ss_pred             h---hhhcCCCCcHHHHHHHc---------CCHHHHHHHhhcCCCcccc------------------ccCCCCCcccc--
Q 038664          210 I---NVLDKRDRNPLHYAAAL---------GHFEIACRLSDEDDTLAYE------------------RDCNGQSPLHL--  257 (464)
Q Consensus       210 ~---~~~~~~g~t~L~~a~~~---------~~~~~v~~Ll~~~~~~~~~------------------~~~~g~tpL~~--  257 (464)
                      .   ...|..+.+|+++|+..         .+.++++.|++.|++....                  ....+.+++|.  
T Consensus       257 ~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  336 (661)
T PHA02917        257 TAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILI  336 (661)
T ss_pred             cccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHH
Confidence            1   12344555666666631         1456666666666532100                  00011122221  


Q ss_pred             -cccCCc--HHHHHHHHHHCCCc-----------------------------ccccccCCCchhHHHHhcCc--------
Q 038664          258 -ASENGK--LSLLKRLLHSYPDS-----------------------------IEFLDKKNRNILHLAAQNGH--------  297 (464)
Q Consensus       258 -A~~~g~--~~~v~~Ll~~~~~~-----------------------------~~~~d~~g~t~L~~A~~~~~--------  297 (464)
                       |+..|.  .++++.|+++|++.                             +...+.+|+||||.|++.+.        
T Consensus       337 ~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~  416 (661)
T PHA02917        337 EYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTY  416 (661)
T ss_pred             HHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhh
Confidence             112332  23444444444331                             23345579999999875432        


Q ss_pred             ---------------hHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhh
Q 038664          298 ---------------ANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIV  362 (464)
Q Consensus       298 ---------------~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a  362 (464)
                                     .+++++|+..   |+++|.+|..|+||||+|+..++.+++++|++. |+|++.++..|+||+++|
T Consensus       417 ~~~~~~~~~~~~~~~~~~v~~Ll~~---GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~-GAdin~~d~~G~T~L~~A  492 (661)
T PHA02917        417 TYKKGLCDMSYACPILSTINICLPY---LKDINMIDKRGETLLHKAVRYNKQSLVSLLLES-GSDVNIRSNNGYTCIAIA  492 (661)
T ss_pred             hhhhccchhhhhhhhHHHHHHHHHC---CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHHHH
Confidence                           4567888887   789999999999999999999999999999975 999999999999999999


Q ss_pred             cc-Cchhh--HHHhhcCCCCC
Q 038664          363 QP-SLHQN--DILEGHGGSAS  380 (464)
Q Consensus       363 ~~-~~~~~--~~l~~~g~~~~  380 (464)
                      .. ..+.+  .++..+|+...
T Consensus       493 ~~~~~~~~iv~~LL~~ga~i~  513 (661)
T PHA02917        493 INESRNIELLKMLLCHKPTLD  513 (661)
T ss_pred             HHhCCCHHHHHHHHHcCCChh
Confidence            84 43433  34667776543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=4.4e-41  Score=327.56  Aligned_cols=346  Identities=16%  Similarity=0.152  Sum_probs=268.6

Q ss_pred             ccHHHHHHHH--cCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCC--HHHHHHHHHhCCccccccccCCCCHHHHH
Q 038664            4 VARVLFRALR--RGDAATVRESARLNGNGILDMSQNRDTALHIAARFGH--KNVVMEILELRPDLVSVENHKSETPMHVA   79 (464)
Q Consensus         4 ~~~~L~~A~~--~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A   79 (464)
                      ..++||.|+.  .++.+.++.|++. |.+++..+..|.||||+|+..|+  .++|+.|+++|++ ++.++..|.||||+|
T Consensus       177 G~TpLH~A~~n~~~~~eIVklLLe~-GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GAD-VN~kD~~G~TPLh~A  254 (764)
T PHA02716        177 GYGILHAYLGNMYVDIDILEWLCNN-GVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGD-MDMKCVNGMSPIMTY  254 (764)
T ss_pred             CCcHHHHHHHhccCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHH
Confidence            4578998764  4678999777764 56999999999999999999995  5999999999999 888999999999998


Q ss_pred             H---HhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHH---HHHHcCCHHHHHHHHHhCCccccccccCCCcHH
Q 038664           80 A---RAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLH---NAVRKCDGKMAFTMIRKDPELICYINKAGQSPL  153 (464)
Q Consensus        80 ~---~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~---~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  153 (464)
                      +   ..++.++++.|++.+....            .....++++   .|+..|+.+++++|++.|++ ++..|..|+|||
T Consensus       255 i~~a~n~~~EIvkiLie~~d~n~------------~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd-IN~kD~~G~TPL  321 (764)
T PHA02716        255 IINIDNINPEITNIYIESLDGNK------------VKNIPMILHSYITLARNIDISVVYSFLQPGVK-LHYKDSAGRTCL  321 (764)
T ss_pred             HHhhhccCHHHHHHHHHhccccc------------cccchhhhHHHHHHHHcCCHHHHHHHHhCCCc-eeccCCCCCCHH
Confidence            6   4679999999998643321            111223344   47889999999999999998 567899999999


Q ss_pred             HHHHH--cCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHH--------------cCCHHHHHHHHHhCchhhhhhcCCC
Q 038664          154 SLAID--AGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAII--------------KSNFVVMAKILEAKRDLINVLDKRD  217 (464)
Q Consensus       154 ~~A~~--~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~--------------~~~~~~~~~ll~~~~~~~~~~~~~g  217 (464)
                      |+|+.  .++.+++++|++.|.++ +.++..|.||||+|+.              .++.++++.|+++|++ ++..|..|
T Consensus       322 H~Aaa~~~~~~eIVklLLe~GADI-N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD-In~kn~~G  399 (764)
T PHA02716        322 HQYILRHNISTDIIKLLHEYGNDL-NEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD-ITAVNCLG  399 (764)
T ss_pred             HHHHHHhCCCchHHHHHHHcCCCC-ccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCC-CCCcCCCC
Confidence            99875  46789999999999987 8899999999999875              3689999999999988 89999999


Q ss_pred             CcHHHHH----HHcCCHHHHHHHhhcCCCcccc-------ccCCCCCc--ccccccCCcHH------------------H
Q 038664          218 RNPLHYA----AALGHFEIACRLSDEDDTLAYE-------RDCNGQSP--LHLASENGKLS------------------L  266 (464)
Q Consensus       218 ~t~L~~a----~~~~~~~~v~~Ll~~~~~~~~~-------~~~~g~tp--L~~A~~~g~~~------------------~  266 (464)
                      .||||.+    ...++.+++++|++.+......       ....+.+|  +|.++..++.+                  +
T Consensus       400 ~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v  479 (764)
T PHA02716        400 YTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDV  479 (764)
T ss_pred             CChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchh
Confidence            9999942    3357899999999987543210       11223344  45555444333                  2


Q ss_pred             HHHHHHHCCCcccccccCCCchhHHHHhcCchH-----HHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCc-----hH
Q 038664          267 LKRLLHSYPDSIEFLDKKNRNILHLAAQNGHAN-----VVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHF-----NI  336 (464)
Q Consensus       267 v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~-----~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~-----~~  336 (464)
                      +..++..+.+ ++..|..|+||||+|+..|+.+     ++++|++.   |+++|.+|.+|+||||+|+++|+.     ++
T Consensus       480 ~~~~ii~~~n-vN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~---GADIN~~d~~G~TPLh~A~~~g~~~~~~~eI  555 (764)
T PHA02716        480 YHCAIIERYN-NAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSI---QYNINIPTKNGVTPLMLTMRNNRLSGHQWYI  555 (764)
T ss_pred             hHHHHHhhcc-ccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhC---CCCCcccCCCCCCHHHHHHHcCCccccHHHH
Confidence            2333333444 4778999999999999998874     45999987   899999999999999999999977     99


Q ss_pred             HHHHHhccccccccccccCCChHHhhccCchhh--HHHhhcCC
Q 038664          337 VLILARNMRVNIRATNEKKQTALAIVQPSLHQN--DILEGHGG  377 (464)
Q Consensus       337 v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~--~~l~~~g~  377 (464)
                      |+.|+++ |++++..      .+.++....+.+  .++.++++
T Consensus       556 vk~LL~~-ga~~~~~------~l~~~~~~~~~~~~~ll~~~~~  591 (764)
T PHA02716        556 VKNILDK-RPNVDIV------IIFLDKCYANGKFPSLLLSEDD  591 (764)
T ss_pred             HHHHHhc-CCCcchH------HHHHHhhhhhhHHHHHHHHcch
Confidence            9999976 8888876      366666433332  23444443

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.3e-41  Score=326.64  Aligned_cols=332  Identities=19%  Similarity=0.149  Sum_probs=271.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcCC---CcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC
Q 038664            7 VLFRALRRGDAATVRESARLNGN---GILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG   83 (464)
Q Consensus         7 ~L~~A~~~g~~~~~~~ll~~~~~---~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g   83 (464)
                      .|+.++..++.+.+.+.++.-..   -.+..+..+.||||+|+..|+.++|++|+++|++ ++.++..|.||||+||..|
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gad-vn~~d~~g~TpLh~A~~~g   81 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHN-VNQPDHRDLTPLHIICKEP   81 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCc
Confidence            57888888988777777765211   1123345678999999999999999999999998 7889999999999999999


Q ss_pred             CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHc--CC
Q 038664           84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDA--GL  161 (464)
Q Consensus        84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~--g~  161 (464)
                      +.+++++|++.+....            ...+.+|++.|+..++.++++.|+..+.......+   ...+......  ..
T Consensus        82 ~~~~v~~Ll~~~~~~~------------~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~---~~~~~~~~~~~~~~  146 (477)
T PHA02878         82 NKLGMKEMIRSINKCS------------VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTID---LVYIDKKSKDDIIE  146 (477)
T ss_pred             cHhHHHHHHHHHhccc------------cccchhhHHHHHHcCCHHHHHHHHhCcccCcccCc---HHHHhhccchhhHH
Confidence            9999999998765532            14678999999999999999999987544211111   0111111111  23


Q ss_pred             HHHHHHHHHhcCcCcCCCCCC-CCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcC
Q 038664          162 THIACCIIKEKLSVLDHRGPN-DLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDED  240 (464)
Q Consensus       162 ~~~~~~Ll~~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~  240 (464)
                      .+++++|+++|+++ +..+.. |.||||+|+..|+.++++.|++.+++ ++..|..|.||||.|++.++.+++++|++.|
T Consensus       147 ~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g  224 (477)
T PHA02878        147 AEITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELLLSYGAN-VNIPDKTNNSPLHHAVKHYNKPIVHILLENG  224 (477)
T ss_pred             HHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            45999999999998 777777 99999999999999999999999988 7899999999999999999999999999999


Q ss_pred             CCccccccCCCCCcccccccC-CcHHHHHHHHHHCCCccccccc-CCCchhHHHHhcCchHHHHHHhcCcchhhhhhccC
Q 038664          241 DTLAYERDCNGQSPLHLASEN-GKLSLLKRLLHSYPDSIEFLDK-KNRNILHLAAQNGHANVVVFISKLPEIEDMINSSD  318 (464)
Q Consensus       241 ~~~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~~~~~~~~~d~-~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d  318 (464)
                      ++++ .+|..|+||||+|+.. ++.+++++|+++|++. +..+. .|.||||+|  .++.+++++|++.   |+++|.+|
T Consensus       225 a~in-~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadv-n~~~~~~g~TpLh~A--~~~~~~v~~Ll~~---gadin~~d  297 (477)
T PHA02878        225 ASTD-ARDKCGNTPLHISVGYCKDYDILKLLLEHGVDV-NAKSYILGLTALHSS--IKSERKLKLLLEY---GADINSLN  297 (477)
T ss_pred             CCCC-CCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCC-CccCCCCCCCHHHHH--ccCHHHHHHHHHC---CCCCCCcC
Confidence            9988 6899999999999975 7899999999999984 77765 799999999  5678999999988   78999999


Q ss_pred             CCCCcHHHHHHHcC-CchHHHHHHhc----cccccccccccCCChHHhhc
Q 038664          319 LEGNTPLHLAAINN-HFNIVLILARN----MRVNIRATNEKKQTALAIVQ  363 (464)
Q Consensus       319 ~~g~t~Lh~A~~~~-~~~~v~~Ll~~----~~~d~~~~n~~g~t~l~~a~  363 (464)
                      ..|+||||+|++.+ ..++++.|+.+    .+.+++.++..|.++-.-+.
T Consensus       298 ~~g~TpL~~A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~g~~~n~~~i  347 (477)
T PHA02878        298 SYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEGFIDNMDCI  347 (477)
T ss_pred             CCCCCHHHHHHHHcCccchHHHHHHHHHHHHhccCcccCcHHHHHHHHHH
Confidence            99999999999854 56777777754    24677888888877644333

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.8e-40  Score=326.05  Aligned_cols=348  Identities=16%  Similarity=0.117  Sum_probs=269.8

Q ss_pred             HHHHHHHHhhcCCCcccccCCCCchhHHHHhc---CCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCH----HHHH
Q 038664           17 AATVRESARLNGNGILDMSQNRDTALHIAARF---GHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNF----GVAK   89 (464)
Q Consensus        17 ~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~----~~v~   89 (464)
                      ++.+++++. ++...+..|.+|+||||+|+..   |+.++|++|++.|++ ++.++..|.||||+|+..|+.    ++++
T Consensus        12 ~~~~~~l~~-~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~-v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~   89 (661)
T PHA02917         12 LDELKQMLR-DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTN-PLHKNWRQLTPLEEYTNSRHVKVNKDIAM   89 (661)
T ss_pred             HHHHHHHHh-ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCC-ccccCCCCCCHHHHHHHcCChhHHHHHHH
Confidence            577888886 4446678899999999998655   889999999999999 678899999999999999985    4567


Q ss_pred             HHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHH--HcCCHHHHHH
Q 038664           90 IFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAI--DAGLTHIACC  167 (464)
Q Consensus        90 ~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~--~~g~~~~~~~  167 (464)
                      .|++.+...+          ..+  ..++++.|+.+++.+++++|+++|++ ++..|..|.|||+.++  ..|+.+++++
T Consensus        90 ~Ll~~~~~~n----------~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gad-in~~d~~g~T~L~~~~a~~~~~~eivkl  156 (661)
T PHA02917         90 ALLEATGYSN----------IND--FNIFSYMKSKNVDVDLIKVLVEHGFD-LSVKCENHRSVIENYVMTDDPVPEIIDL  156 (661)
T ss_pred             HHHhccCCCC----------CCC--cchHHHHHhhcCCHHHHHHHHHcCCC-CCccCCCCccHHHHHHHccCCCHHHHHH
Confidence            8887654322          111  23677889999999999999999999 5688999999999654  5789999999


Q ss_pred             HHHhcCcCcCCCC---CCC-----------CCHHHHHHH-----------cCCHHHHHHHHHhCchhhhhhcCCCCcHHH
Q 038664          168 IIKEKLSVLDHRG---PND-----------LTLLHIAII-----------KSNFVVMAKILEAKRDLINVLDKRDRNPLH  222 (464)
Q Consensus       168 Ll~~~~~~~~~~~---~~~-----------~~~l~~a~~-----------~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~  222 (464)
                      |+++|+++ +..+   ..|           .||||+|+.           .++.+++++|++.|++ ++..|.+|.||||
T Consensus       157 Li~~Ga~v-n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-vn~~d~~G~TpLh  234 (661)
T PHA02917        157 FIENGCSV-LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK-PSSIDKNYCTALQ  234 (661)
T ss_pred             HHHcCCCc-cccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC-cccCCCCCCcHHH
Confidence            99999987 3332   223           599999986           4689999999999998 8999999999999


Q ss_pred             HHHHcCCH--HHHHHHhhcCCCcc---ccccCCCCCccccccc-------C--CcHHHHHHHHHHCCCcc------ccc-
Q 038664          223 YAAALGHF--EIACRLSDEDDTLA---YERDCNGQSPLHLASE-------N--GKLSLLKRLLHSYPDSI------EFL-  281 (464)
Q Consensus       223 ~a~~~~~~--~~v~~Ll~~~~~~~---~~~~~~g~tpL~~A~~-------~--g~~~~v~~Ll~~~~~~~------~~~-  281 (464)
                      +|+..|+.  +++++|++ |++..   ...+..+.+|+++|+.       +  .+.++++.|++.|++..      +.. 
T Consensus       235 ~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~  313 (661)
T PHA02917        235 YYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWR  313 (661)
T ss_pred             HHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccc
Confidence            99999985  79999975 66543   2356678899999983       2  27899999999997521      111 


Q ss_pred             -----------ccCCCchhHHHH---hcCc--hHHHHHHhcCcc---------------------------hhhhhhccC
Q 038664          282 -----------DKKNRNILHLAA---QNGH--ANVVVFISKLPE---------------------------IEDMINSSD  318 (464)
Q Consensus       282 -----------d~~g~t~L~~A~---~~~~--~~~~~~L~~~~~---------------------------~~~~~~~~d  318 (464)
                                 ...+.+++|.+.   ..|.  .+++++|++.+.                           .|++++.++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~  393 (661)
T PHA02917        314 NDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHL  393 (661)
T ss_pred             cchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccC
Confidence                       112344544443   3565  458888877632                           234455566


Q ss_pred             CCCCcHHHHHHHcC-----------------------CchHHHHHHhccccccccccccCCChHHhhccCchhhH--HHh
Q 038664          319 LEGNTPLHLAAINN-----------------------HFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQND--ILE  373 (464)
Q Consensus       319 ~~g~t~Lh~A~~~~-----------------------~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~--~l~  373 (464)
                      .+|+||||.|++.+                       ..+++++|+++ |+|++.+|..|+|||++|...++.+.  .|.
T Consensus       394 ~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~-GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll  472 (661)
T PHA02917        394 DDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPY-LKDINMIDKRGETLLHKAVRYNKQSLVSLLL  472 (661)
T ss_pred             CCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHC-CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHH
Confidence            67999999997543                       24577999976 99999999999999999987666544  577


Q ss_pred             hcCCCCCCCC
Q 038664          374 GHGGSASGTG  383 (464)
Q Consensus       374 ~~g~~~~~~~  383 (464)
                      .+|+......
T Consensus       473 ~~GAdin~~d  482 (661)
T PHA02917        473 ESGSDVNIRS  482 (661)
T ss_pred             HCcCCCCCCC
Confidence            8898775443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=4.6e-42  Score=340.11  Aligned_cols=353  Identities=25%  Similarity=0.318  Sum_probs=222.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCH
Q 038664            6 RVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNF   85 (464)
Q Consensus         6 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~   85 (464)
                      .+||.|+..|+.+++..++..+ +..+..+-.|.||+|.||..+..+++++|+++|++ +..++....||+|.|...|+.
T Consensus       244 ~~lh~a~~~g~~~i~~~l~~~g-a~~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~-~~~~~~~~kt~l~~a~~~g~~  321 (1143)
T KOG4177|consen  244 TPLHVAAFMGHLDIVKLLLQHG-ASVNVSTVRGETPLHMAARAGQVEVCKLLLQNGAD-VLAKARDDQTPLHIASRLGHE  321 (1143)
T ss_pred             cHHHHHHhccchhHHHHHHhcc-cccCcccccccCcchhhhccchhhhHhhhhccCcc-cccccccccChhhhhcccchH
Confidence            4566666666666665555433 35555566666666666666666666666666666 555666666666666666666


Q ss_pred             HHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHH
Q 038664           86 GVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIA  165 (464)
Q Consensus        86 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~  165 (464)
                      ++++++++.++.++          ..+..|.||+|++++.++.++..++...++. ....+..+.+|++.|+..|..+++
T Consensus       322 ~i~~~~l~~~~~~~----------aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~-~~~a~~k~~~pl~la~~~g~~~~v  390 (1143)
T KOG4177|consen  322 EIVHLLLQAGATPN----------AARTAGYTPLHLAAKEGQVEVAGALLEHGAQ-RRQAEEKGFTPLHLAVKSGRVSVV  390 (1143)
T ss_pred             HHHHHHhhccCCcc----------ccCcCCcccccHhhhhhhHHHHHHhhccccc-cCcccccCCcchhhhcccCchhHH
Confidence            66666666555433          3344455555555555555544444444433 223344455555555555555555


Q ss_pred             HHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcC-CHHHHHHHhhcCCCcc
Q 038664          166 CCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALG-HFEIACRLSDEDDTLA  244 (464)
Q Consensus       166 ~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~-~~~~v~~Ll~~~~~~~  244 (464)
                      +.++..+.+. +..+..|.||||.+...++..+++.+++.+.. .+..+..|.||+|.|+..| ..+....+++.+.+++
T Consensus       391 ~Lll~~ga~~-~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~-~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n  468 (1143)
T KOG4177|consen  391 ELLLEAGADP-NSAGKNGVTPLHVAAHYGNPRVVKLLLKRGAS-PNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPN  468 (1143)
T ss_pred             HhhhhccCCc-ccCCCCCcceeeehhhccCcceEEEEeccCCC-hhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcc
Confidence            5555555553 44455555555555555555555555544444 4444445555555555544 4444444444444444


Q ss_pred             ccccCCCCCcc---------------------------------cccccCCcHHHHHHHHHHCCCcccccccCCCchhHH
Q 038664          245 YERDCNGQSPL---------------------------------HLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHL  291 (464)
Q Consensus       245 ~~~~~~g~tpL---------------------------------~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~  291 (464)
                       .....|.|||                                 |.|...+...+++.+++++.. ++.++..|.||||.
T Consensus       469 -~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~-v~~~~~r~~TpLh~  546 (1143)
T KOG4177|consen  469 -AVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGAN-VDLRTGRGYTPLHV  546 (1143)
T ss_pred             -hhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCc-eehhcccccchHHH
Confidence             2344444444                                 444444555555555555555 47788889999999


Q ss_pred             HHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCchhhH-
Q 038664          292 AAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQND-  370 (464)
Q Consensus       292 A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~-  370 (464)
                      |+.+|+.++|++|++.   +++++.+|+.|+||||.|+..|+.+++.+|+++ |+++|..+.+|.|||++|...++... 
T Consensus       547 A~~~g~v~~VkfLLe~---gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~-GA~vna~d~~g~TpL~iA~~lg~~~~~  622 (1143)
T KOG4177|consen  547 AVHYGNVDLVKFLLEH---GADVNAKDKLGYTPLHQAAQQGHNDIAELLLKH-GASVNAADLDGFTPLHIAVRLGYLSVV  622 (1143)
T ss_pred             HHhcCCchHHHHhhhC---CccccccCCCCCChhhHHHHcChHHHHHHHHHc-CCCCCcccccCcchhHHHHHhcccchh
Confidence            9999999999999998   789999999999999999999999999999977 99999999999999999998887655 


Q ss_pred             -HHhhcCCCC
Q 038664          371 -ILEGHGGSA  379 (464)
Q Consensus       371 -~l~~~g~~~  379 (464)
                       .+...++.+
T Consensus       623 k~l~~~~~~~  632 (1143)
T KOG4177|consen  623 KLLKVVTATP  632 (1143)
T ss_pred             hHHHhccCcc
Confidence             366666664

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.4e-41  Score=328.72  Aligned_cols=286  Identities=22%  Similarity=0.269  Sum_probs=169.5

Q ss_pred             HHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHH-----HHHhCCHHHHHHH
Q 038664           17 AATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHV-----AARAGNFGVAKIF   91 (464)
Q Consensus        17 ~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~-----A~~~g~~~~v~~L   91 (464)
                      .+.++++++.+ ...+..+..+.||||.|+..|+.++|++|++.|++ ++..+..|.||||+     |+..++.+++++|
T Consensus        15 ~~~~~~~~~~~-~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~-~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~L   92 (480)
T PHA03100         15 VKNIKYIIMED-DLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGAD-INSSTKNNSTPLHYLSNIKYNLTDVKEIVKLL   92 (480)
T ss_pred             HHHHHHHHhcC-ccchhhhcccchhhhhhhccCCHHHHHHHHHcCCC-CCCccccCcCHHHHHHHHHHHhhchHHHHHHH
Confidence            44555555432 23335555666777777777777777777777666 55566666677777     7777777777777


Q ss_pred             hcccCCCCCCcchHHHHhhcCCCCCcHHHHHH--HcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcC--CHHHHHH
Q 038664           92 MRPHGNGNNTGTFDDILRKQDEEGNTPLHNAV--RKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAG--LTHIACC  167 (464)
Q Consensus        92 l~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g--~~~~~~~  167 (464)
                      ++.|++.          +..+..|.||||+|+  ..|+.+++++|++.|++ .+..+..|.||||+|+..|  +.+++++
T Consensus        93 l~~ga~i----------~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~iv~~  161 (480)
T PHA03100         93 LEYGANV----------NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN-VNIKNSDGENLLHLYLESNKIDLKILKL  161 (480)
T ss_pred             HHCCCCC----------CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCChHHHHHH
Confidence            7666653          355666666666666  66666666666666665 3455566666666666666  6666666


Q ss_pred             HHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccc
Q 038664          168 IIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYER  247 (464)
Q Consensus       168 Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~  247 (464)
                      |+++|.++ +..+..|.||||+|+..++.++++.|++.+++ ++..+..|.++++.                        
T Consensus       162 Ll~~g~di-n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~------------------------  215 (480)
T PHA03100        162 LIDKGVDI-NAKNRYGYTPLHIAVEKGNIDVIKFLLDNGAD-INAGDIETLLFTIF------------------------  215 (480)
T ss_pred             HHHCCCCc-ccccCCCCCHHHHHHHhCCHHHHHHHHHcCCC-ccCCCCCCCcHHHH------------------------
Confidence            66666554 44555556666666666666666666665554 44455555211111                        


Q ss_pred             cCCCCCcccccccCCc--HHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHH
Q 038664          248 DCNGQSPLHLASENGK--LSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPL  325 (464)
Q Consensus       248 ~~~g~tpL~~A~~~g~--~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~L  325 (464)
                          .||||.|+..|+  .+++++|++.|.+ ++.+|..|.||||+|+..++.+++++|++.   |++++.+|..|+|||
T Consensus       216 ----~t~l~~a~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~---gad~n~~d~~g~tpl  287 (480)
T PHA03100        216 ----ETPLHIAACYNEITLEVVNYLLSYGVP-INIKDVYGFTPLHYAVYNNNPEFVKYLLDL---GANPNLVNKYGDTPL  287 (480)
T ss_pred             ----HhHHHHHHHhCcCcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCccCCCCCcHH
Confidence                455555555555  5555555555554 355555555555555555555555555554   445555555555666


Q ss_pred             HHHHHcCCchHHHHHHhcccccccc
Q 038664          326 HLAAINNHFNIVLILARNMRVNIRA  350 (464)
Q Consensus       326 h~A~~~~~~~~v~~Ll~~~~~d~~~  350 (464)
                      |+|++.++.+++++|+++ |++++.
T Consensus       288 ~~A~~~~~~~iv~~Ll~~-g~~i~~  311 (480)
T PHA03100        288 HIAILNNNKEIFKLLLNN-GPSIKT  311 (480)
T ss_pred             HHHHHhCCHHHHHHHHhc-CCCHHH
Confidence            666555555555555543 555544

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=9.5e-42  Score=337.91  Aligned_cols=362  Identities=27%  Similarity=0.359  Sum_probs=311.3

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCC
Q 038664            5 ARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGN   84 (464)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~   84 (464)
                      .+++|.|+..+.++.+ +++...|.++...|..|-||||.|+..|+.+++++++.+++. .+..+..|.||+|.|++.+.
T Consensus       210 ~tpl~~a~~~nri~~~-eLll~~gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~-~~~~~vr~~tplh~AA~~~~  287 (1143)
T KOG4177|consen  210 FTPLHIACKKNRIKVV-ELLLKHGADVSAKDESGLTPLHVAAFMGHLDIVKLLLQHGAS-VNVSTVRGETPLHMAARAGQ  287 (1143)
T ss_pred             CCchhhhcccccccee-eeeeeccCcCCcccccCccHHHHHHhccchhHHHHHHhcccc-cCcccccccCcchhhhccch
Confidence            4578888888888888 555556668888888888888888888888888888888888 77788888888888888888


Q ss_pred             HHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHH
Q 038664           85 FGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHI  164 (464)
Q Consensus        85 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~  164 (464)
                      .+++++|++.++++.          .++....||+|.|...++.+++.++++.++. ++..+..|.+|+|+++..++.++
T Consensus       288 ~e~~~~ll~~ga~~~----------~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~-~~aar~~g~t~lHlaa~~~~~~~  356 (1143)
T KOG4177|consen  288 VEVCKLLLQNGADVL----------AKARDDQTPLHIASRLGHEEIVHLLLQAGAT-PNAARTAGYTPLHLAAKEGQVEV  356 (1143)
T ss_pred             hhhHhhhhccCcccc----------cccccccChhhhhcccchHHHHHHHhhccCC-ccccCcCCcccccHhhhhhhHHH
Confidence            888888888888743          6778888888888888888888888888877 46777888899999998888887


Q ss_pred             HHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCcc
Q 038664          165 ACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLA  244 (464)
Q Consensus       165 ~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~  244 (464)
                      ..++...+... ......+++|+|.|+..+..+.++.++.++.. ++..+..|.||||.++..++..+++.+++++++.+
T Consensus       357 ~~~l~~~~~~~-~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~-~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~  434 (1143)
T KOG4177|consen  357 AGALLEHGAQR-RQAEEKGFTPLHLAVKSGRVSVVELLLEAGAD-PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPN  434 (1143)
T ss_pred             HHHhhcccccc-CcccccCCcchhhhcccCchhHHHhhhhccCC-cccCCCCCcceeeehhhccCcceEEEEeccCCChh
Confidence            77777766665 66778889999999999999999999999988 89999999999999999999999999999999988


Q ss_pred             ccccCCCCCcccccccCC-cHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCc---------------
Q 038664          245 YERDCNGQSPLHLASENG-KLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLP---------------  308 (464)
Q Consensus       245 ~~~~~~g~tpL~~A~~~g-~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~---------------  308 (464)
                       ..+..|+||+|+|+..| ..+....+++.+.+ ++.....|.||||.|+..|+.++++.+++..               
T Consensus       435 -~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~-~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lh  512 (1143)
T KOG4177|consen  435 -AKAKLGYTPLHVAAKKGRYLQIARLLLQYGAD-PNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLH  512 (1143)
T ss_pred             -hHhhcCCChhhhhhhcccHhhhhhhHhhcCCC-cchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhh
Confidence             68889999999999999 88888888888888 5999999999999999999999999887743               


Q ss_pred             ---------------chhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCchhhH--H
Q 038664          309 ---------------EIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQND--I  371 (464)
Q Consensus       309 ---------------~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~--~  371 (464)
                                     ..+..++.++..|+||||.|+.+|+.++|++|+++ |+|++++++.|+||||.|+..++.+.  +
T Consensus       513 la~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~-gAdv~ak~~~G~TPLH~Aa~~G~~~i~~L  591 (1143)
T KOG4177|consen  513 LAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEH-GADVNAKDKLGYTPLHQAAQQGHNDIAEL  591 (1143)
T ss_pred             hhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhC-CccccccCCCCCChhhHHHHcChHHHHHH
Confidence                           12556778888999999999999999999999987 99999999999999999998888766  4


Q ss_pred             HhhcCCCCCCCCC
Q 038664          372 LEGHGGSASGTGT  384 (464)
Q Consensus       372 l~~~g~~~~~~~~  384 (464)
                      |.++|+.++....
T Consensus       592 Llk~GA~vna~d~  604 (1143)
T KOG4177|consen  592 LLKHGASVNAADL  604 (1143)
T ss_pred             HHHcCCCCCcccc
Confidence            8889998865443

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.4e-40  Score=320.92  Aligned_cols=261  Identities=22%  Similarity=0.275  Sum_probs=233.0

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHH-----HHhcCCHHHHHHHHHhCCccccccccCCCCHHHHH
Q 038664            5 ARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHI-----AARFGHKNVVMEILELRPDLVSVENHKSETPMHVA   79 (464)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~-----A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A   79 (464)
                      .++||.|++.|+.+.++.+++.+ .+++..+..+.||||+     |+..|+.+++++|++.|++ ++..+..|.||||+|
T Consensus        36 ~t~L~~A~~~~~~~ivk~Ll~~g-~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~-i~~~d~~g~tpL~~A  113 (480)
T PHA03100         36 VLPLYLAKEARNIDVVKILLDNG-ADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGAN-VNAPDNNGITPLLYA  113 (480)
T ss_pred             chhhhhhhccCCHHHHHHHHHcC-CCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCC-CCCCCCCCCchhhHH
Confidence            57999999999999999999764 5888888999999999     9999999999999999999 589999999999999


Q ss_pred             H--HhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcC--CHHHHHHHHHhCCccccccccCCCcHHHH
Q 038664           80 A--RAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKC--DGKMAFTMIRKDPELICYINKAGQSPLSL  155 (464)
Q Consensus        80 ~--~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  155 (464)
                      +  ..|+.+++++|++.|++.          +..+..|.||||+|+..+  +.+++++|++.|+++ +..+..|.||||+
T Consensus       114 ~~~~~~~~~iv~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tpL~~  182 (480)
T PHA03100        114 ISKKSNSYSIVEYLLDNGANV----------NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYTPLHI  182 (480)
T ss_pred             HhcccChHHHHHHHHHcCCCC----------CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCCHHHH
Confidence            9  999999999999999884          478899999999999999  999999999999984 6678899999999


Q ss_pred             HHHcCCHHHHHHHHHhcCcCcCCCCCCC------CCHHHHHHHcCC--HHHHHHHHHhCchhhhhhcCCCCcHHHHHHHc
Q 038664          156 AIDAGLTHIACCIIKEKLSVLDHRGPND------LTLLHIAIIKSN--FVVMAKILEAKRDLINVLDKRDRNPLHYAAAL  227 (464)
Q Consensus       156 A~~~g~~~~~~~Ll~~~~~~~~~~~~~~------~~~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~  227 (464)
                      |+..|+.+++++|+++|.++ +..+..+      .+|||.|+..++  .+++++|++.|.+ ++..|..|.||||+|+..
T Consensus       183 A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~TpL~~A~~~  260 (480)
T PHA03100        183 AVEKGNIDVIKFLLDNGADI-NAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVP-INIKDVYGFTPLHYAVYN  260 (480)
T ss_pred             HHHhCCHHHHHHHHHcCCCc-cCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHc
Confidence            99999999999999999987 6677777      788888888888  8888888888876 788888888888888888


Q ss_pred             CCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccc
Q 038664          228 GHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLD  282 (464)
Q Consensus       228 ~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d  282 (464)
                      |+.+++++|++.|++++ .++..|.||+++|++.++.+++++|+++|++. +..+
T Consensus       261 ~~~~iv~~Ll~~gad~n-~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i-~~i~  313 (480)
T PHA03100        261 NNPEFVKYLLDLGANPN-LVNKYGDTPLHIAILNNNKEIFKLLLNNGPSI-KTII  313 (480)
T ss_pred             CCHHHHHHHHHcCCCCC-ccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCH-HHHH
Confidence            88888888888888776 57888888888888888888888888888863 4433

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-39  Score=314.73  Aligned_cols=275  Identities=19%  Similarity=0.175  Sum_probs=235.3

Q ss_pred             cccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccc
Q 038664           66 SVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYI  145 (464)
Q Consensus        66 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  145 (464)
                      +..+..+.||||+|+..|+.++|++|++.|++.          +.++..|.||||+|+..|+.++++.|++.+....   
T Consensus        31 ~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadv----------n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~---   97 (477)
T PHA02878         31 TSASLIPFIPLHQAVEARNLDVVKSLLTRGHNV----------NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCS---   97 (477)
T ss_pred             CcccccCcchHHHHHHcCCHHHHHHHHHCCCCC----------CCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccc---
Confidence            345567899999999999999999999999884          4789999999999999999999999999865532   


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHc--CCHHHHHHHHHhCchhhhhhcCC-CCcHHH
Q 038664          146 NKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIK--SNFVVMAKILEAKRDLINVLDKR-DRNPLH  222 (464)
Q Consensus       146 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~--~~~~~~~~ll~~~~~~~~~~~~~-g~t~L~  222 (464)
                      ...+.+|++.|+..++.++++.|+..+.......+   ...+......  .+.++++.|++.+++ ++..+.. |.||||
T Consensus        98 ~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~iv~~Ll~~gad-in~~~~~~g~tpLh  173 (477)
T PHA02878         98 VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTID---LVYIDKKSKDDIIEAEITKLLLSYGAD-INMKDRHKGNTALH  173 (477)
T ss_pred             cccchhhHHHHHHcCCHHHHHHHHhCcccCcccCc---HHHHhhccchhhHHHHHHHHHHHcCCC-CCccCCCCCCCHHH
Confidence            25678999999999999999999987543211111   0111111111  234599999999988 7888888 999999


Q ss_pred             HHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhc-CchHHH
Q 038664          223 YAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQN-GHANVV  301 (464)
Q Consensus       223 ~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~-~~~~~~  301 (464)
                      +|+..|+.+++++|++.|++++ ..+..|.||||.|++.|+.++++.|++.|++ ++.+|..|+||||+|+.. ++.+++
T Consensus       174 ~A~~~~~~~iv~~Ll~~gad~n-~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~-in~~d~~g~TpLh~A~~~~~~~~iv  251 (477)
T PHA02878        174 YATENKDQRLTELLLSYGANVN-IPDKTNNSPLHHAVKHYNKPIVHILLENGAS-TDARDKCGNTPLHISVGYCKDYDIL  251 (477)
T ss_pred             HHHhCCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhcCCHHHH
Confidence            9999999999999999999987 6899999999999999999999999999998 599999999999999976 789999


Q ss_pred             HHHhcCcchhhhhhccCC-CCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccC
Q 038664          302 VFISKLPEIEDMINSSDL-EGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPS  365 (464)
Q Consensus       302 ~~L~~~~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~  365 (464)
                      ++|++.   |+++|.++. .|+||||+|  .++.+++++|++. |+|++.+|..|.||+++|...
T Consensus       252 ~~Ll~~---gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~-gadin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        252 KLLLEH---GVDVNAKSYILGLTALHSS--IKSERKLKLLLEY-GADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             HHHHHc---CCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHH
Confidence            999988   788898886 799999999  5678999999976 999999999999999999854

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-37  Score=300.93  Aligned_cols=276  Identities=14%  Similarity=0.185  Sum_probs=173.2

Q ss_pred             cCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhc--CCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC------CH
Q 038664           14 RGDAATVRESARLNGNGILDMSQNRDTALHIAARF--GHKNVVMEILELRPDLVSVENHKSETPMHVAARAG------NF   85 (464)
Q Consensus        14 ~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g------~~   85 (464)
                      ..+.+.++.|++. |.+++.. ..|.|+||.++..  ++.++|+.|+++|++ ++.++ .+.||||.|+..+      +.
T Consensus        13 ~~~~~~v~~LL~~-GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAd-vn~~~-~~~tpL~~a~~~~~~~~~~~~   88 (494)
T PHA02989         13 TVDKNALEFLLRT-GFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGAD-VNYKG-YIETPLCAVLRNREITSNKIK   88 (494)
T ss_pred             cCcHHHHHHHHHc-CCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCC-ccCCC-CCCCcHHHHHhccCcchhhHH
Confidence            4677888777754 4577755 5677777665543  357888888888887 55454 4678888777643      45


Q ss_pred             HHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHc---CCHHHHHHHHHhCCccccccccCCCcHHHHHHHc--C
Q 038664           86 GVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRK---CDGKMAFTMIRKDPELICYINKAGQSPLSLAIDA--G  160 (464)
Q Consensus        86 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~--g  160 (464)
                      +++++|+++|++          ++.++..|.||||.|+..   ++.+++++|+++|+++....+..|.||||+|+..  +
T Consensus        89 ~iv~~Ll~~Gad----------in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~  158 (494)
T PHA02989         89 KIVKLLLKFGAD----------INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSV  158 (494)
T ss_pred             HHHHHHHHCCCC----------CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccC
Confidence            778888888877          347777788888877654   5677888888887775356677778888777654  4


Q ss_pred             CHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcC----CHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcC------CH
Q 038664          161 LTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKS----NFVVMAKILEAKRDLINVLDKRDRNPLHYAAALG------HF  230 (464)
Q Consensus       161 ~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~----~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~------~~  230 (464)
                      +.+++++|+++|.++....+..|.||||.|++.+    +.+++++|++.|.+ ++..+..+.|+||.++..+      ..
T Consensus       159 ~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~-vn~~~~~~~t~l~~~~~~~~~~~~~~~  237 (494)
T PHA02989        159 KKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN-IETNNNGSESVLESFLDNNKILSKKEF  237 (494)
T ss_pred             CHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCC-ccccCCccccHHHHHHHhchhhcccch
Confidence            6777777777777763225566777777766543    66777777777766 5666666677776655432      23


Q ss_pred             HHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcC
Q 038664          231 EIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL  307 (464)
Q Consensus       231 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~  307 (464)
                      +++++|+. +++++ .+|..|+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|++.++.++++.|++.
T Consensus       238 ~il~~l~~-~advn-~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad-in~~d~~G~TpL~~A~~~~~~~iv~~LL~~  311 (494)
T PHA02989        238 KVLNFILK-YIKIN-KKDKKGFNPLLISAKVDNYEAFNYLLKLGDD-IYNVSKDGDTVLTYAIKHGNIDMLNRILQL  311 (494)
T ss_pred             HHHHHHHh-CCCCC-CCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            44444333 23333 3444555555555555555555555555544 255555555555555555555555555443

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.7e-37  Score=271.58  Aligned_cols=232  Identities=16%  Similarity=0.113  Sum_probs=191.6

Q ss_pred             hCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCC
Q 038664           82 AGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGL  161 (464)
Q Consensus        82 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~  161 (464)
                      .++.+++++|+++++.            .+|.+|+||||+|+..|+.+++++|++.+++.. .  .++.||||+|+..|+
T Consensus         9 ~~~~~~~~~Lis~~a~------------~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n-~--~d~~TpLh~Aa~~g~   73 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF------------KADVHGHSALYYAIADNNVRLVCTLLNAGALKN-L--LENEFPLHQAATLED   73 (284)
T ss_pred             cCHHHHHHHHHhCCCC------------CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCc-C--CCCCCHHHHHHHCCC
Confidence            4577888999987764            468889999999999999999999999887642 2  346899999999999


Q ss_pred             HHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCC-cHHHHHHHcCCHHHHHHHhhcC
Q 038664          162 THIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDR-NPLHYAAALGHFEIACRLSDED  240 (464)
Q Consensus       162 ~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~-t~L~~a~~~~~~~~v~~Ll~~~  240 (464)
                      .+++++|++.+.++ +..+..|.||||+|+..++.++++.|++.+++ ++..+..|+ ||||+|+..|+.+++++|++++
T Consensus        74 ~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad-in~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~  151 (284)
T PHA02791         74 TKIVKILLFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI  151 (284)
T ss_pred             HHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccCCCCCcHHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999988877 77888899999999999999999999998877 677777774 8999999999999999999886


Q ss_pred             CCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCch-hHHHHhcCchHHHHHHhcCcchhhhhhccCC
Q 038664          241 DTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNI-LHLAAQNGHANVVVFISKLPEIEDMINSSDL  319 (464)
Q Consensus       241 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~-L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~  319 (464)
                      +...  ....|.||||+|++.|+.++++.|+++|++ ++..|..|.|| ||+|+.+|+.+++++|++.   |+++|.+|.
T Consensus       152 ~~~~--d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd-~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~---Ga~in~~~~  225 (284)
T PHA02791        152 PSTF--DLAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDLEMLQALFKY---DINIYSVNL  225 (284)
T ss_pred             Cccc--ccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHC---CCCCccCcc
Confidence            5432  112478999999999999999999998887 48888888876 8999999999999998887   788888888


Q ss_pred             CCCcHHHHHHHcCCchHHHHHHhc
Q 038664          320 EGNTPLHLAAINNHFNIVLILARN  343 (464)
Q Consensus       320 ~g~t~Lh~A~~~~~~~~v~~Ll~~  343 (464)
                      +| |+|      ++.+++++||++
T Consensus       226 ~~-~~l------~~~e~~~~ll~~  242 (284)
T PHA02791        226 EN-VLL------DDAEIAKMIIEK  242 (284)
T ss_pred             cC-ccC------CCHHHHHHHHHh
Confidence            54 555      788889999876

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.6e-37  Score=296.28  Aligned_cols=282  Identities=17%  Similarity=0.177  Sum_probs=242.0

Q ss_pred             hhHHHHh---cCCHHHHHHHHHhCCccccccccCCCCHHHHHHHh--CCHHHHHHHhcccCCCCCCcchHHHHhhcCCCC
Q 038664           41 ALHIAAR---FGHKNVVMEILELRPDLVSVENHKSETPMHVAARA--GNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEG  115 (464)
Q Consensus        41 ~Lh~A~~---~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g  115 (464)
                      +||.-+.   ..+.++|++|+++|++ ++.. ..|.||||.++..  ++.++|++|+++|++.+          .++ .+
T Consensus         3 ~l~~y~~~~~~~~~~~v~~LL~~Gad-vN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn----------~~~-~~   69 (494)
T PHA02989          3 SLYEYILYSDTVDKNALEFLLRTGFD-VNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVN----------YKG-YI   69 (494)
T ss_pred             HHHHHHHcCCcCcHHHHHHHHHcCCC-cccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCcc----------CCC-CC
Confidence            4554443   4679999999999999 6666 6799999876654  37899999999999965          344 57


Q ss_pred             CcHHHHHHH------cCCHHHHHHHHHhCCccccccccCCCcHHHHHHHc---CCHHHHHHHHHhcCcCcCCCCCCCCCH
Q 038664          116 NTPLHNAVR------KCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDA---GLTHIACCIIKEKLSVLDHRGPNDLTL  186 (464)
Q Consensus       116 ~t~L~~A~~------~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~~~~~  186 (464)
                      .||||.|+.      .++.+++++|+++|++ ++.++..|.|||+.|+..   ++.+++++|+++|+++.+..+..|.||
T Consensus        70 ~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tp  148 (494)
T PHA02989         70 ETPLCAVLRNREITSNKIKKIVKLLLKFGAD-INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNL  148 (494)
T ss_pred             CCcHHHHHhccCcchhhHHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCH
Confidence            999999875      4789999999999999 577899999999988765   679999999999998746788899999


Q ss_pred             HHHHHHc--CCHHHHHHHHHhCchhhhh-hcCCCCcHHHHHHHcC----CHHHHHHHhhcCCCccccccCCCCCcccccc
Q 038664          187 LHIAIIK--SNFVVMAKILEAKRDLINV-LDKRDRNPLHYAAALG----HFEIACRLSDEDDTLAYERDCNGQSPLHLAS  259 (464)
Q Consensus       187 l~~a~~~--~~~~~~~~ll~~~~~~~~~-~~~~g~t~L~~a~~~~----~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~  259 (464)
                      ||+|+..  ++.++++.|++.|++ ++. .+..|.||||.|++.+    +.+++++|+++|++.+ ..+..+.||+|.++
T Consensus       149 Lh~a~~~~~~~~~iv~~Ll~~Gad-i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn-~~~~~~~t~l~~~~  226 (494)
T PHA02989        149 LHMYLESFSVKKDVIKILLSFGVN-LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIE-TNNNGSESVLESFL  226 (494)
T ss_pred             HHHHHHhccCCHHHHHHHHHcCCC-ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCcc-ccCCccccHHHHHH
Confidence            9998764  689999999999988 555 6789999999998764    8999999999999987 57778999998766


Q ss_pred             cC------CcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCC
Q 038664          260 EN------GKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNH  333 (464)
Q Consensus       260 ~~------g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~  333 (464)
                      ..      +..+++++|+. +.+ ++.+|..|+||||+|+..++.+++++|++.   |++++.+|..|+||||+|++.++
T Consensus       227 ~~~~~~~~~~~~il~~l~~-~ad-vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~---Gadin~~d~~G~TpL~~A~~~~~  301 (494)
T PHA02989        227 DNNKILSKKEFKVLNFILK-YIK-INKKDKKGFNPLLISAKVDNYEAFNYLLKL---GDDIYNVSKDGDTVLTYAIKHGN  301 (494)
T ss_pred             HhchhhcccchHHHHHHHh-CCC-CCCCCCCCCCHHHHHHHhcCHHHHHHHHHc---CCCccccCCCCCCHHHHHHHcCC
Confidence            53      46788887665 565 699999999999999999999999999988   78999999999999999999999


Q ss_pred             chHHHHHHhc
Q 038664          334 FNIVLILARN  343 (464)
Q Consensus       334 ~~~v~~Ll~~  343 (464)
                      .++++.|++.
T Consensus       302 ~~iv~~LL~~  311 (494)
T PHA02989        302 IDMLNRILQL  311 (494)
T ss_pred             HHHHHHHHhc
Confidence            9999999975

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=9.9e-38  Score=274.01  Aligned_cols=219  Identities=25%  Similarity=0.287  Sum_probs=189.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhcC-CCc---ccccCCCCchhHHHHhcCCHHHHHHHHHhCCccc--------cccccCCC
Q 038664            6 RVLFRALRRGDAATVRESARLNG-NGI---LDMSQNRDTALHIAARFGHKNVVMEILELRPDLV--------SVENHKSE   73 (464)
Q Consensus         6 ~~L~~A~~~g~~~~~~~ll~~~~-~~~---~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--------~~~~~~g~   73 (464)
                      ...+.|++.|....+..++.... .++   .....+|.|||-+||++||.++|++|+++..-.+        +-...+|-
T Consensus         6 ~~~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iega   85 (615)
T KOG0508|consen    6 AVVINAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGA   85 (615)
T ss_pred             HHHHHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCC
Confidence            34568999999999988886532 111   1346788899999999999999999999632212        23456788


Q ss_pred             CHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHH
Q 038664           74 TPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPL  153 (464)
Q Consensus        74 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  153 (464)
                      +||..|+..||.++|+.|++++++.+          .......|||-.||.-|+.+++++|++++++ +...|+.|.|.|
T Consensus        86 ppLWaAsaAGHl~vVk~L~~~ga~VN----------~tT~TNStPLraACfDG~leivKyLvE~gad-~~IanrhGhTcL  154 (615)
T KOG0508|consen   86 PPLWAASAAGHLEVVKLLLRRGASVN----------DTTRTNSTPLRAACFDGHLEIVKYLVEHGAD-PEIANRHGHTCL  154 (615)
T ss_pred             chhhHHhccCcHHHHHHHHHhcCccc----------cccccCCccHHHHHhcchhHHHHHHHHcCCC-CcccccCCCeeE
Confidence            99999999999999999999998744          5566677999999999999999999999999 578899999999


Q ss_pred             HHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHH
Q 038664          154 SLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIA  233 (464)
Q Consensus       154 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v  233 (464)
                      ++|+..|+.+++++|++.++++ +.++..|.|+||.|+..|+.++++.|+.++..  -..|..|.|||..|+..|+.++|
T Consensus       155 mIa~ykGh~~I~qyLle~gADv-n~ks~kGNTALH~caEsG~vdivq~Ll~~ga~--i~~d~~GmtPL~~Aa~tG~~~iV  231 (615)
T KOG0508|consen  155 MIACYKGHVDIAQYLLEQGADV-NAKSYKGNTALHDCAESGSVDIVQLLLKHGAK--IDVDGHGMTPLLLAAVTGHTDIV  231 (615)
T ss_pred             EeeeccCchHHHHHHHHhCCCc-chhcccCchHHHhhhhcccHHHHHHHHhCCce--eeecCCCCchHHHHhhhcchHHH
Confidence            9999999999999999999998 99999999999999999999999999999985  45677899999999999999999


Q ss_pred             HHHhh
Q 038664          234 CRLSD  238 (464)
Q Consensus       234 ~~Ll~  238 (464)
                      ++|++
T Consensus       232 e~L~~  236 (615)
T KOG0508|consen  232 ERLLQ  236 (615)
T ss_pred             HHHhc
Confidence            99985

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-36  Score=267.97  Aligned_cols=234  Identities=18%  Similarity=0.174  Sum_probs=170.6

Q ss_pred             CCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcc
Q 038664           15 GDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRP   94 (464)
Q Consensus        15 g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~   94 (464)
                      ++.+.++.+++ .+.  +..|.+|+||||+|+..|+.++++.|++.+++ ++..  +|.||||+|+..|+.+++++|++.
T Consensus        10 ~~~~~~~~Lis-~~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~-~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~   83 (284)
T PHA02791         10 KSKQLKSFLSS-KDA--FKADVHGHSALYYAIADNNVRLVCTLLNAGAL-KNLL--ENEFPLHQAATLEDTKIVKILLFS   83 (284)
T ss_pred             CHHHHHHHHHh-CCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCC-CcCC--CCCCHHHHHHHCCCHHHHHHHHHC
Confidence            44555544444 432  45677788888888888888888888888876 3333  367888888888888888888887


Q ss_pred             cCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCC-CcHHHHHHHcCCHHHHHHHHHhcC
Q 038664           95 HGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAG-QSPLSLAIDAGLTHIACCIIKEKL  173 (464)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g-~t~l~~A~~~g~~~~~~~Ll~~~~  173 (464)
                      +++.          +.+|..|+||||+|+..|+.+++++|++.++++ +..+..| .||||+|+..|+.+++++|+++++
T Consensus        84 Gadv----------n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~  152 (284)
T PHA02791         84 GMDD----------SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP  152 (284)
T ss_pred             CCCC----------CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCC
Confidence            7763          367778888888888888888888888888774 4455555 478888888888888888887654


Q ss_pred             cCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcH-HHHHHHcCCHHHHHHHhhcCCCccccccCCCC
Q 038664          174 SVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNP-LHYAAALGHFEIACRLSDEDDTLAYERDCNGQ  252 (464)
Q Consensus       174 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~-L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  252 (464)
                      ...+.  ..|.||||+|+.+|+.++++.|++.+++ ++..+..|.|| ||+|+..|+.+++++|+++|++++ .+|..+ 
T Consensus       153 ~~~d~--~~g~TpLh~Aa~~g~~eiv~lLL~~gAd-~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in-~~~~~~-  227 (284)
T PHA02791        153 STFDL--AILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIY-SVNLEN-  227 (284)
T ss_pred             ccccc--ccCccHHHHHHHcCCHHHHHHHHHCCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCc-cCcccC-
Confidence            33111  2467888888888888888888888776 67777777766 888888888888888888887776 455533 


Q ss_pred             CcccccccCCcHHHHHHHHHHCCC
Q 038664          253 SPLHLASENGKLSLLKRLLHSYPD  276 (464)
Q Consensus       253 tpL~~A~~~g~~~~v~~Ll~~~~~  276 (464)
                      +||      ++.|++++||++..+
T Consensus       228 ~~l------~~~e~~~~ll~~~~~  245 (284)
T PHA02791        228 VLL------DDAEIAKMIIEKHVE  245 (284)
T ss_pred             ccC------CCHHHHHHHHHhhhh
Confidence            444      677888888877655

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-36  Score=289.71  Aligned_cols=253  Identities=20%  Similarity=0.251  Sum_probs=195.0

Q ss_pred             CCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCc
Q 038664           38 RDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNT  117 (464)
Q Consensus        38 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t  117 (464)
                      .+++||.|+..|+.+++++|++.|++ ++..+..|.||||+|+..|+.+++++|++.|+++.          ..+..+.|
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~~~t   70 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGIN-PNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD----------VKYPDIES   70 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc----------ccCCCccc
Confidence            35778888888888888888888877 66677778888888888888888888888877643          45567778


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHH
Q 038664          118 PLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFV  197 (464)
Q Consensus       118 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~  197 (464)
                      |||+|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+
T Consensus        71 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~  149 (413)
T PHA02875         71 ELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIK  149 (413)
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHH
Confidence            8888888888888888888877665566677888888888888888888888888776 777778888888888888888


Q ss_pred             HHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCC-CCcccccccCCcHHHHHHHHHHCCC
Q 038664          198 VMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNG-QSPLHLASENGKLSLLKRLLHSYPD  276 (464)
Q Consensus       198 ~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~g~~~~v~~Ll~~~~~  276 (464)
                      +++.|++.+++ ++..|..|.||||+|+..|+.+++++|++.|++++. .+..| .||+|+|+..|+.+++++|+++|++
T Consensus       150 ~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~-~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad  227 (413)
T PHA02875        150 GIELLIDHKAC-LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDY-FGKNGCVAALCYAIENNKIDIVRLFIKRGAD  227 (413)
T ss_pred             HHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCc-CCCCCCchHHHHHHHcCCHHHHHHHHHCCcC
Confidence            88888888776 677788888888888888888888888888888774 44444 5778888888888888888888877


Q ss_pred             ccccc---ccCCCchhHHHHhc---CchHHHHHHh
Q 038664          277 SIEFL---DKKNRNILHLAAQN---GHANVVVFIS  305 (464)
Q Consensus       277 ~~~~~---d~~g~t~L~~A~~~---~~~~~~~~L~  305 (464)
                      . +..   +..+.||++.++..   ...+.++.++
T Consensus       228 ~-n~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~li  261 (413)
T PHA02875        228 C-NIMFMIEGEECTILDMICNMCTNLESEAIDALI  261 (413)
T ss_pred             c-chHhhcCCCchHHHHHHHhhcCCcccHHHHHHH
Confidence            4 443   56677888876543   3344454444

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-36  Score=290.03  Aligned_cols=241  Identities=19%  Similarity=0.201  Sum_probs=222.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcC
Q 038664          115 GNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKS  194 (464)
Q Consensus       115 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~  194 (464)
                      .+++|+.|+..|+.+++++|++.|++ ++..+..|.||||+|+..|+.+++++|+++|..+ +..+..+.+|||.|+..|
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~g   79 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGIN-PNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEG   79 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHCC
Confidence            47899999999999999999999988 4567888999999999999999999999999876 777788999999999999


Q ss_pred             CHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHC
Q 038664          195 NFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSY  274 (464)
Q Consensus       195 ~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  274 (464)
                      +.++++.|++.+....+..+.+|.||||+|+..|+.+++++|++.|+++. .++..|.||||+|+..|+.+++++|++++
T Consensus        80 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~-~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g  158 (413)
T PHA02875         80 DVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD-IPNTDKFSPLHLAVMMGDIKGIELLIDHK  158 (413)
T ss_pred             CHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999999987556677889999999999999999999999999988 68889999999999999999999999999


Q ss_pred             CCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCC-cHHHHHHHcCCchHHHHHHhccccccccc--
Q 038664          275 PDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGN-TPLHLAAINNHFNIVLILARNMRVNIRAT--  351 (464)
Q Consensus       275 ~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~-t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~--  351 (464)
                      ++ ++.+|..|+||||+|+..|+.+++++|++.   |++++..+..|. ||+|+|+..++.+++++|+++ |+|++..  
T Consensus       159 ~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~---ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~-gad~n~~~~  233 (413)
T PHA02875        159 AC-LDIEDCCGCTPLIIAMAKGDIAICKMLLDS---GANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR-GADCNIMFM  233 (413)
T ss_pred             CC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHC-CcCcchHhh
Confidence            88 599999999999999999999999999998   788898888875 899999999999999999976 9999876  


Q ss_pred             -cccCCChHHhhc
Q 038664          352 -NEKKQTALAIVQ  363 (464)
Q Consensus       352 -n~~g~t~l~~a~  363 (464)
                       ++.+.||++++.
T Consensus       234 ~~~~~~t~l~~~~  246 (413)
T PHA02875        234 IEGEECTILDMIC  246 (413)
T ss_pred             cCCCchHHHHHHH
Confidence             678999999876

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-37  Score=237.98  Aligned_cols=209  Identities=24%  Similarity=0.271  Sum_probs=175.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCcCcCCCC-CCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcC
Q 038664          150 QSPLSLAIDAGLTHIACCIIKEKLSVLDHRG-PNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALG  228 (464)
Q Consensus       150 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~  228 (464)
                      .++.+.+++.....-++.+++.....++.++ .+|+||||+||..|+.+++.+|++.....++..|..|+||||.|+..|
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g   83 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNG   83 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcC
Confidence            3455556666555556666665553334443 478888888888888888888887555557788899999999999999


Q ss_pred             CHHHHHHHhhc-CCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcC
Q 038664          229 HFEIACRLSDE-DDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL  307 (464)
Q Consensus       229 ~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~  307 (464)
                      +.++|+.|+.+ +++++ ..+..|+|+||+|+..|..+++++|+++|+. ++..|..|+||||.|+.-|+.+++++|+..
T Consensus        84 ~~evVk~Ll~r~~advn-a~tn~G~T~LHyAagK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAavGklkvie~Li~~  161 (226)
T KOG4412|consen   84 NDEVVKELLNRSGADVN-ATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAAVGKLKVIEYLISQ  161 (226)
T ss_pred             cHHHHHHHhcCCCCCcc-eecCCCcceehhhhcCChhhHHHHHHhcCCC-CcccccccCchhHHHHhccchhhHHHHHhc
Confidence            99999999999 66766 6888999999999999999999999999977 699999999999999999999999999988


Q ss_pred             cchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccC
Q 038664          308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPS  365 (464)
Q Consensus       308 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~  365 (464)
                         ++.+|.+|..|+||||.|.-.|+.++..+|++. |+|++..|++| ||+.++...
T Consensus       162 ---~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~-gAd~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  162 ---GAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRA-GADTDREDKEG-TALRIACNE  214 (226)
T ss_pred             ---CCCCCcccccCccHHHHHHhccCchHHHHHHHh-ccceeeccccC-chHHHHHHH
Confidence               678999999999999999888999999999976 89999999999 999998843

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.7e-37  Score=235.31  Aligned_cols=206  Identities=24%  Similarity=0.265  Sum_probs=171.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhcCCCcc-cccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCC
Q 038664            6 RVLFRALRRGDAATVRESARLNGNGIL-DMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGN   84 (464)
Q Consensus         6 ~~L~~A~~~g~~~~~~~ll~~~~~~~~-~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~   84 (464)
                      ...+.+++......+++++++.+..++ +.|++|+|||||||.+|+.++|++|+......++.+|..|+||||.||..|+
T Consensus         5 ~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~   84 (226)
T KOG4412|consen    5 SLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGN   84 (226)
T ss_pred             chHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCc
Confidence            456677888888888899988876777 5556999999999999999999999965444467788999999999999999


Q ss_pred             HHHHHHHhcc-cCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHH
Q 038664           85 FGVAKIFMRP-HGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTH  163 (464)
Q Consensus        85 ~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~  163 (464)
                      .|+|+.|+.+ +++          ++..+..|.|+||||+..|+.+++++|+++|+. +..+|+.|.||||.|+.-|..+
T Consensus        85 ~evVk~Ll~r~~ad----------vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAavGklk  153 (226)
T KOG4412|consen   85 DEVVKELLNRSGAD----------VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAAVGKLK  153 (226)
T ss_pred             HHHHHHHhcCCCCC----------cceecCCCcceehhhhcCChhhHHHHHHhcCCC-CcccccccCchhHHHHhccchh
Confidence            9999999988 666          457888999999999999999999999999966 6788999999999999999999


Q ss_pred             HHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHH
Q 038664          164 IACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAA  225 (464)
Q Consensus       164 ~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~  225 (464)
                      ++++|+..++.. +..|..|+||||.|...++.++...|++.+++ ....|++| |++..++
T Consensus       154 vie~Li~~~a~~-n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd-~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  154 VIEYLISQGAPL-NTQDKYGFTPLHHALAEGHPDVAVLLVRAGAD-TDREDKEG-TALRIAC  212 (226)
T ss_pred             hHHHHHhcCCCC-CcccccCccHHHHHHhccCchHHHHHHHhccc-eeeccccC-chHHHHH
Confidence            999998888665 88888888888888777888888888888866 66777777 7765554

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.7e-35  Score=284.87  Aligned_cols=282  Identities=15%  Similarity=0.172  Sum_probs=200.2

Q ss_pred             HHHHHHHcC---CHHHHHHHHhhcCCCcccccCCCCchhHHHHh--cCCHHHHHHHHHhCCccccccccCCCCHHHHHHH
Q 038664            7 VLFRALRRG---DAATVRESARLNGNGILDMSQNRDTALHIAAR--FGHKNVVMEILELRPDLVSVENHKSETPMHVAAR   81 (464)
Q Consensus         7 ~L~~A~~~g---~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~   81 (464)
                      .||.-+...   +.+.|+.+++..  +++.. ..+.|+++.+..  .++.++|++|+++|++ ++..+..|.||||.|+.
T Consensus         5 ~l~~y~~~~~~~~~~~v~~ll~~~--~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpL~~~~~   80 (489)
T PHA02798          5 NLYNYITFSDNVKLSTVKLLIKSC--NPNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGAN-VNGLDNEYSTPLCTILS   80 (489)
T ss_pred             hhHHHeeecCcccHHHHHHHHhcC--Chhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCC-CCCCCCCCCChHHHHHH
Confidence            455554433   477888888642  44432 346677764443  3478999999999998 78888999999998876


Q ss_pred             h-----CCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcC---CHHHHHHHHHhCCccccccccCCCcHH
Q 038664           82 A-----GNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKC---DGKMAFTMIRKDPELICYINKAGQSPL  153 (464)
Q Consensus        82 ~-----g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~---~~~~~~~Ll~~~~~~~~~~~~~g~t~l  153 (464)
                      +     ++.+++++|+++|++.          +.++..|.||||+|+..+   +.+++++|++.|++ ++..+..|.|||
T Consensus        81 n~~~~~~~~~iv~~Ll~~Gadi----------N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~tpL  149 (489)
T PHA02798         81 NIKDYKHMLDIVKILIENGADI----------NKKNSDGETPLYCLLSNGYINNLEILLFMIENGAD-TTLLDKDGFTML  149 (489)
T ss_pred             hHHhHHhHHHHHHHHHHCCCCC----------CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCC-ccccCCCCCcHH
Confidence            4     6688999999988884          478888999999998875   67888888888888 467788888888


Q ss_pred             HHHHHcCC---HHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHc----CCHHHHHHHHHhCchhhhhhcCCCCcHHH----
Q 038664          154 SLAIDAGL---THIACCIIKEKLSVLDHRGPNDLTLLHIAIIK----SNFVVMAKILEAKRDLINVLDKRDRNPLH----  222 (464)
Q Consensus       154 ~~A~~~g~---~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~----~~~~~~~~ll~~~~~~~~~~~~~g~t~L~----  222 (464)
                      |+|+..++   .+++++|++.|.++....+..+.||||.++..    ++.+++++|+++|.+ ++..+..+.++++    
T Consensus       150 ~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~-i~~~~~~~~~~~~~~l~  228 (489)
T PHA02798        150 QVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFI-INKENKSHKKKFMEYLN  228 (489)
T ss_pred             HHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCC-cccCCccccchHHHHHH
Confidence            88888877   88888888888776333345677888877654    367788888887776 5666666777665    


Q ss_pred             ---HHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchH
Q 038664          223 ---YAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHAN  299 (464)
Q Consensus       223 ---~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~  299 (464)
                         ++...++.+++.+|+. +++++ .+|..|+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+++++.+
T Consensus       229 ~l~~~~~~~~~~i~~~l~~-~~dvN-~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAd-in~~d~~G~TpL~~A~~~~~~~  305 (489)
T PHA02798        229 SLLYDNKRFKKNILDFIFS-YIDIN-QVDELGFNPLYYSVSHNNRKIFEYLLQLGGD-INIITELGNTCLFTAFENESKF  305 (489)
T ss_pred             HHHhhcccchHHHHHHHHh-cCCCC-CcCcCCccHHHHHHHcCcHHHHHHHHHcCCc-ccccCCCCCcHHHHHHHcCcHH
Confidence               1233445566666554 34444 4666677777777777777777777776666 4666777777777777777777


Q ss_pred             HHHHHhcC
Q 038664          300 VVVFISKL  307 (464)
Q Consensus       300 ~~~~L~~~  307 (464)
                      +++.|++.
T Consensus       306 iv~~lL~~  313 (489)
T PHA02798        306 IFNSILNK  313 (489)
T ss_pred             HHHHHHcc
Confidence            77666665

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.7e-35  Score=283.02  Aligned_cols=283  Identities=17%  Similarity=0.183  Sum_probs=240.4

Q ss_pred             CHHHHHHHHHhCCccccccccCCCCHHHHHHH--hCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHc--
Q 038664           50 HKNVVMEILELRPDLVSVENHKSETPMHVAAR--AGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRK--  125 (464)
Q Consensus        50 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~--  125 (464)
                      ..+.|+.|++.+.. ...  ..|.|+++.+..  .++.+++++|+++|++.          +..+..|.||||.|+..  
T Consensus        17 ~~~~v~~ll~~~~~-~~~--~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadv----------n~~d~~g~TpL~~~~~n~~   83 (489)
T PHA02798         17 KLSTVKLLIKSCNP-NEI--VNEYSIFQKYLQRDSPSTDIVKLFINLGANV----------NGLDNEYSTPLCTILSNIK   83 (489)
T ss_pred             cHHHHHHHHhcCCh-hhh--cccchHHHHHHhCCCCCHHHHHHHHHCCCCC----------CCCCCCCCChHHHHHHhHH
Confidence            36899999986543 222  457788775554  44889999999999984          47889999999998864  


Q ss_pred             ---CCHHHHHHHHHhCCccccccccCCCcHHHHHHHcC---CHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCC---H
Q 038664          126 ---CDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAG---LTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSN---F  196 (464)
Q Consensus       126 ---~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g---~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~---~  196 (464)
                         ++.+++++|++.|++ ++..+..|.||||+|+..+   +.+++++|+++|+++ +..+..|.||||+|++.++   .
T Consensus        84 ~~~~~~~iv~~Ll~~Gad-iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~  161 (489)
T PHA02798         84 DYKHMLDIVKILIENGAD-INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDI  161 (489)
T ss_pred             hHHhHHHHHHHHHHCCCC-CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchH
Confidence               668999999999999 5788999999999999876   789999999999998 8999999999999999988   9


Q ss_pred             HHHHHHHHhCchhhhhh-cCCCCcHHHHHHHc----CCHHHHHHHhhcCCCccccccCCCCCccc-------ccccCCcH
Q 038664          197 VVMAKILEAKRDLINVL-DKRDRNPLHYAAAL----GHFEIACRLSDEDDTLAYERDCNGQSPLH-------LASENGKL  264 (464)
Q Consensus       197 ~~~~~ll~~~~~~~~~~-~~~g~t~L~~a~~~----~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~-------~A~~~g~~  264 (464)
                      ++++.|++.+.+ ++.. +..|.||||.++..    ++.+++++|+++|+++. ..+..+.++++       .+...++.
T Consensus       162 ~vv~~Ll~~gad-in~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~-~~~~~~~~~~~~~l~~l~~~~~~~~~  239 (489)
T PHA02798        162 EIIKLLLEKGVD-INTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIIN-KENKSHKKKFMEYLNSLLYDNKRFKK  239 (489)
T ss_pred             HHHHHHHHhCCC-cccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcc-cCCccccchHHHHHHHHHhhcccchH
Confidence            999999999987 6665 46789999998764    48999999999999887 46777888876       35567788


Q ss_pred             HHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhcc
Q 038664          265 SLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNM  344 (464)
Q Consensus       265 ~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~  344 (464)
                      +++++|+. +.+ ++.+|..|+||||+|+.+++.+++++|++.   |+++|.+|..|+||||+|++.++.++++.|++. 
T Consensus       240 ~i~~~l~~-~~d-vN~~d~~G~TPL~~A~~~~~~~~v~~LL~~---GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~-  313 (489)
T PHA02798        240 NILDFIFS-YID-INQVDELGFNPLYYSVSHNNRKIFEYLLQL---GGDINIITELGNTCLFTAFENESKFIFNSILNK-  313 (489)
T ss_pred             HHHHHHHh-cCC-CCCcCcCCccHHHHHHHcCcHHHHHHHHHc---CCcccccCCCCCcHHHHHHHcCcHHHHHHHHcc-
Confidence            88888765 565 699999999999999999999999999998   789999999999999999999999999999965 


Q ss_pred             ccccccccccC
Q 038664          345 RVNIRATNEKK  355 (464)
Q Consensus       345 ~~d~~~~n~~g  355 (464)
                      +++++......
T Consensus       314 ~~~~~~i~~~~  324 (489)
T PHA02798        314 KPNKNTISYTY  324 (489)
T ss_pred             CCCHHHHHHHH
Confidence            88877554433

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.6e-34  Score=270.85  Aligned_cols=316  Identities=13%  Similarity=0.076  Sum_probs=213.1

Q ss_pred             ccCCCCchhHHHH-hcCCHHHHHHHHHhCCccccccccCCCCHHHHHHH-hCCHHHHHHHhcccCCCCC--CcchH----
Q 038664           34 MSQNRDTALHIAA-RFGHKNVVMEILELRPDLVSVENHKSETPMHVAAR-AGNFGVAKIFMRPHGNGNN--TGTFD----  105 (464)
Q Consensus        34 ~~~~g~t~Lh~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~~~~~~~--~~~~~----  105 (464)
                      .+.+|.+++|+-+ ..|+.|+|++|+++|++ ++.++..|.||+|+|+. .++.|++++|++.|++...  .....    
T Consensus        67 ~n~~~~~~~~~~~s~n~~lElvk~LI~~GAd-vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~  145 (631)
T PHA02792         67 KNINDFDIFEYLCSDNIDIELLKLLISKGLE-INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIE  145 (631)
T ss_pred             CccCCccHHHHHHHhcccHHHHHHHHHcCCC-cccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhh
Confidence            3445555665433 45667777777777777 55666667777777755 4777777777777766321  11100    


Q ss_pred             --------------------HHHhhcCCCCCcHHHHHHHcC-------CHHHHHHHHHhCCccccccccCCCcHHHHHHH
Q 038664          106 --------------------DILRKQDEEGNTPLHNAVRKC-------DGKMAFTMIRKDPELICYINKAGQSPLSLAID  158 (464)
Q Consensus       106 --------------------~~~~~~~~~g~t~L~~A~~~~-------~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~  158 (464)
                                          -.++..+..|.||||+|+.++       +.++++.|+++|+++ ...|..|.||||+|+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~  224 (631)
T PHA02792        146 QITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVD  224 (631)
T ss_pred             hcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHH
Confidence                                023455666777777777777       677777777777763 4456667777777777


Q ss_pred             cC--CHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHH--c----C--CHHHHHHHHHhCc--hhhh---hhcC--------
Q 038664          159 AG--LTHIACCIIKEKLSVLDHRGPNDLTLLHIAII--K----S--NFVVMAKILEAKR--DLIN---VLDK--------  215 (464)
Q Consensus       159 ~g--~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~--~----~--~~~~~~~ll~~~~--~~~~---~~~~--------  215 (464)
                      +.  ..++++.|++...+.     ......|.--.+  .    .  +..++..|++.+.  +...   ..+.        
T Consensus       225 ~~~i~~ei~~~L~~~~~~~-----~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~  299 (631)
T PHA02792        225 KCDIKREIFDALFDSNYSG-----NELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSIL  299 (631)
T ss_pred             cccchHHHHHHHHhccccc-----cchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHH
Confidence            77  667777776632211     111222221111  1    1  2235666665443  1000   0000        


Q ss_pred             -----CCCcHHHHHHHcC--CHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCC--C
Q 038664          216 -----RDRNPLHYAAALG--HFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKN--R  286 (464)
Q Consensus       216 -----~g~t~L~~a~~~~--~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g--~  286 (464)
                           .-+-.||.-...+  +.+++++|+++|++..   ......+++.|+..|+.+++++|+++|++ ++..|.+|  .
T Consensus       300 ~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~GAD-IN~kD~~g~~~  375 (631)
T PHA02792        300 KRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKNGNV-VVEDDDNIINI  375 (631)
T ss_pred             HHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHcCCc-hhhhcCCCCCh
Confidence                 0112455555565  6899999999999864   12245678899999999999999999999 58888775  6


Q ss_pred             chhHHHHhcCchH---HHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhc
Q 038664          287 NILHLAAQNGHAN---VVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQ  363 (464)
Q Consensus       287 t~L~~A~~~~~~~---~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~  363 (464)
                      ||||+|+.....+   ++++|++.   ++++|.+|..|.||||+|+..++.+++++|+++ |++++.+|..|+||+++|.
T Consensus       376 TpLh~A~~n~~~~v~~IlklLIs~---GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~-GADIN~kD~~G~TpL~~A~  451 (631)
T PHA02792        376 MPLFPTLSIHESDVLSILKLCKPY---IDDINKIDKHGRSILYYCIESHSVSLVEWLIDN-GADINITTKYGSTCIGICV  451 (631)
T ss_pred             hHHHHHHHhccHhHHHHHHHHHhc---CCccccccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHH
Confidence            9999988776654   46666666   789999999999999999999999999999986 9999999999999999996


Q ss_pred             c
Q 038664          364 P  364 (464)
Q Consensus       364 ~  364 (464)
                      .
T Consensus       452 ~  452 (631)
T PHA02792        452 I  452 (631)
T ss_pred             H
Confidence            4

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.8e-33  Score=261.49  Aligned_cols=325  Identities=15%  Similarity=0.093  Sum_probs=232.8

Q ss_pred             HHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHh-cCCHHHHHHHHHhCCccccccccCCCCHHHHHHHh-----
Q 038664            9 FRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAAR-FGHKNVVMEILELRPDLVSVENHKSETPMHVAARA-----   82 (464)
Q Consensus         9 ~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-----   82 (464)
                      +.|...|++|.++.|++ +|++++..+..+++|+|+|+. .|+.|++++|+++|++ ....+..|.|||+.-+..     
T Consensus        77 ~~~s~n~~lElvk~LI~-~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad-~~~~~~~g~~~~~~~~~~~~~~~  154 (631)
T PHA02792         77 YLCSDNIDIELLKLLIS-KGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIP-TCSNIQYGYKIIIEQITRAEYYN  154 (631)
T ss_pred             HHHHhcccHHHHHHHHH-cCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCC-cccccccCcchhhhhcccccccc
Confidence            56788999999988887 467999888889999999976 6999999999999998 666789999999876531     


Q ss_pred             --------------------CCHHHHHHHhcccCCCC--CCcchHHH------HhhcCCCCCcHHHHHHHcC--CHHHHH
Q 038664           83 --------------------GNFGVAKIFMRPHGNGN--NTGTFDDI------LRKQDEEGNTPLHNAVRKC--DGKMAF  132 (464)
Q Consensus        83 --------------------g~~~~v~~Ll~~~~~~~--~~~~~~~~------~~~~~~~g~t~L~~A~~~~--~~~~~~  132 (464)
                                          |...+.-++..+..+..  ..+..+-+      ++..|..|.||||+|+...  +.|+++
T Consensus       155 ~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~  234 (631)
T PHA02792        155 WDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFD  234 (631)
T ss_pred             hhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHH
Confidence                                22233344443311111  11111112      2346788999999999999  899999


Q ss_pred             HHHHhCCccccccccCCCcHHH--HHHHc----C--CHHHHHHHHHhcCc--CcC---CCCC-------------CCCCH
Q 038664          133 TMIRKDPELICYINKAGQSPLS--LAIDA----G--LTHIACCIIKEKLS--VLD---HRGP-------------NDLTL  186 (464)
Q Consensus       133 ~Ll~~~~~~~~~~~~~g~t~l~--~A~~~----g--~~~~~~~Ll~~~~~--~~~---~~~~-------------~~~~~  186 (464)
                      +|++..-..   .+.  ...|.  +-.+.    +  +..++..|++.+..  +..   ....             .-+..
T Consensus       235 ~L~~~~~~~---~~~--~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~  309 (631)
T PHA02792        235 ALFDSNYSG---NEL--MNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDL  309 (631)
T ss_pred             HHHhccccc---cch--HhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHH
Confidence            999863221   111  11121  11122    1  23478888876542  110   0010             11233


Q ss_pred             HHHHHHcC--CHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCC--CCCcccccccCC
Q 038664          187 LHIAIIKS--NFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCN--GQSPLHLASENG  262 (464)
Q Consensus       187 l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~--g~tpL~~A~~~g  262 (464)
                      ||.-..++  +.++++++++.|....   ......+++.|+..|+.+++++|+++|++++ .+|..  +.||||.|+...
T Consensus       310 l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN-~kD~~g~~~TpLh~A~~n~  385 (631)
T PHA02792        310 LSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKNGNVVV-EDDDNIINIMPLFPTLSIH  385 (631)
T ss_pred             HHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHcCCchh-hhcCCCCChhHHHHHHHhc
Confidence            44444454  6789999999998632   2235667999999999999999999999987 46655  469999887766


Q ss_pred             cH---HHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHH---cCC---
Q 038664          263 KL---SLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAI---NNH---  333 (464)
Q Consensus       263 ~~---~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~---~~~---  333 (464)
                      ..   +++++|+++|++ ++.+|..|+||||+|+..++.+++++|++.   |++++.+|..|+||||+|+.   .+.   
T Consensus       386 ~~~v~~IlklLIs~GAD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs~---GADIN~kD~~G~TpL~~A~~~~~~~~~~i  461 (631)
T PHA02792        386 ESDVLSILKLCKPYIDD-INKIDKHGRSILYYCIESHSVSLVEWLIDN---GADINITTKYGSTCIGICVILAHACIPEI  461 (631)
T ss_pred             cHhHHHHHHHHHhcCCc-cccccccCcchHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHHHhcccHHH
Confidence            54   468888999998 599999999999999999999999999998   78999999999999999976   222   


Q ss_pred             ----chHHHHHHhccccccc
Q 038664          334 ----FNIVLILARNMRVNIR  349 (464)
Q Consensus       334 ----~~~v~~Ll~~~~~d~~  349 (464)
                          .++++.|+++ +.+++
T Consensus       462 ~~~~~~il~lLLs~-~p~i~  480 (631)
T PHA02792        462 AELYIKILEIILSK-LPTIE  480 (631)
T ss_pred             HHHHHHHHHHHHhc-CCChh
Confidence                4567888876 65544

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.9e-32  Score=240.91  Aligned_cols=187  Identities=18%  Similarity=0.226  Sum_probs=169.5

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhhcCCCccc--------ccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHH
Q 038664            5 ARVLFRALRRGDAATVRESARLNGNGILD--------MSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPM   76 (464)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~--------~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L   76 (464)
                      .++|..||++|+.+.++++++..+.++.+        ....|-+||-.|+..||.++||.|+++|++ +|.......|||
T Consensus        43 ~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~-VN~tT~TNStPL  121 (615)
T KOG0508|consen   43 GTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGAS-VNDTTRTNSTPL  121 (615)
T ss_pred             CCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCc-cccccccCCccH
Confidence            46788999999999999999976655542        345788999999999999999999999988 777778888999


Q ss_pred             HHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHH
Q 038664           77 HVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLA  156 (464)
Q Consensus        77 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A  156 (464)
                      -.||..|+.++|++|+++++++.          ..|..|.|.||+|+..|+.+++++|++.|++ ++.++..|.|+||.|
T Consensus       122 raACfDG~leivKyLvE~gad~~----------IanrhGhTcLmIa~ykGh~~I~qyLle~gAD-vn~ks~kGNTALH~c  190 (615)
T KOG0508|consen  122 RAACFDGHLEIVKYLVEHGADPE----------IANRHGHTCLMIACYKGHVDIAQYLLEQGAD-VNAKSYKGNTALHDC  190 (615)
T ss_pred             HHHHhcchhHHHHHHHHcCCCCc----------ccccCCCeeEEeeeccCchHHHHHHHHhCCC-cchhcccCchHHHhh
Confidence            99999999999999999999955          8899999999999999999999999999999 578899999999999


Q ss_pred             HHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 038664          157 IDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEA  205 (464)
Q Consensus       157 ~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  205 (464)
                      +++|+.++++.|++++...  ..+..|.|||..|...|+.+++..|++.
T Consensus       191 aEsG~vdivq~Ll~~ga~i--~~d~~GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  191 AESGSVDIVQLLLKHGAKI--DVDGHGMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             hhcccHHHHHHHHhCCcee--eecCCCCchHHHHhhhcchHHHHHHhcC
Confidence            9999999999999999886  4456699999999999999999999953

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=2.1e-33  Score=257.63  Aligned_cols=207  Identities=28%  Similarity=0.361  Sum_probs=187.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHh-cCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhc-CCCCcHHHHHHHcC
Q 038664          151 SPLSLAIDAGLTHIACCIIKE-KLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLD-KRDRNPLHYAAALG  228 (464)
Q Consensus       151 t~l~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t~L~~a~~~~  228 (464)
                      .-+..|++.|..+.++.+++. +.++ +..|.+|.++||+|+.+++.+++++|++++++ +|... .-+.||||+|+++|
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~~g~~v-~~~D~~g~tlLHWAAiNNrl~v~r~li~~gad-vn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVESEGESV-NNPDREGVTLLHWAAINNRLDVARYLISHGAD-VNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhhcCcCC-CCCCcCCccceeHHHHcCcHHHHHHHHHcCCC-ccccCCCCCCCcchHHHHcC
Confidence            446778888999999999888 5555 77888999999999999999999999999998 77776 77889999999999


Q ss_pred             CHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCc
Q 038664          229 HFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLP  308 (464)
Q Consensus       229 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~  308 (464)
                      +..+|.+|+++|+++. .+|.+|.+|+|.|++.|+.-++-+|+.++.+ ++.+|.+|+||||+|+..|....+..|++. 
T Consensus       124 ~~~vv~lLlqhGAdpt-~~D~~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAaykg~~~~v~~LL~f-  200 (600)
T KOG0509|consen  124 HISVVDLLLQHGADPT-LKDKQGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYKGFALFVRRLLKF-  200 (600)
T ss_pred             cHHHHHHHHHcCCCCc-eecCCCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHhcccHHHHHHHHh-
Confidence            9999999999999999 6999999999999999999999999999977 699999999999999999998888888887 


Q ss_pred             chhhhhhccC-CCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccC
Q 038664          309 EIEDMINSSD-LEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPS  365 (464)
Q Consensus       309 ~~~~~~~~~d-~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~  365 (464)
                        ++.++.+| .+|+||||+|+..|+..+++ |+.+.|++.+.+|.+|+||+++|.+.
T Consensus       201 --~a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  201 --GASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             --cccccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence              67788877 89999999999999999999 55567999999999999999999865

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=3.3e-32  Score=249.71  Aligned_cols=210  Identities=22%  Similarity=0.302  Sum_probs=185.5

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccc-cCCCCHHHHHHHhC
Q 038664            5 ARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVEN-HKSETPMHVAARAG   83 (464)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~g   83 (464)
                      -..++.|++.|+++.++++++..+.+++..|.+|-|+||+||.+++.+++++|+++|++ ++... .-+.||||+|+++|
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gad-vn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGAD-VNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCC-ccccCCCCCCCcchHHHHcC
Confidence            45678999999999999999987778888999999999999999999999999999999 55554 77899999999999


Q ss_pred             CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHH
Q 038664           84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTH  163 (464)
Q Consensus        84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~  163 (464)
                      +..+|++|+++|++++          .+|.+|.+|||.|++.++.-++-+|+.++.+ ++.+|.+|+|||++|+..|...
T Consensus       124 ~~~vv~lLlqhGAdpt----------~~D~~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAaykg~~~  192 (600)
T KOG0509|consen  124 HISVVDLLLQHGADPT----------LKDKQGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYKGFAL  192 (600)
T ss_pred             cHHHHHHHHHcCCCCc----------eecCCCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHhcccH
Confidence            9999999999999965          8899999999999999999999999999966 6889999999999999999988


Q ss_pred             HHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHc
Q 038664          164 IACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAAL  227 (464)
Q Consensus       164 ~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~  227 (464)
                      .+..|++-++.+.-..+..|.||||+|+..|+..+++ |+..++......|.+|.||+..|..+
T Consensus       193 ~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  193 FVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHHHHhcccccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            8999999988885555588999999999999999999 55555555788888899999999777

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.97  E-value=1.1e-30  Score=250.26  Aligned_cols=325  Identities=20%  Similarity=0.226  Sum_probs=293.5

Q ss_pred             CCcccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHH
Q 038664            1 ESTVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAA   80 (464)
Q Consensus         1 e~~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~   80 (464)
                      |+.++..|-.||+.|+.|.+..++.++ .++..+|..|.+||.+|+..||..+|+.|+.+.+++-...|..+.|+|-+||
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rg-aniehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRG-ANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhc-ccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec
Confidence            456778899999999999997777654 5888999999999999999999999999999999977788999999999999


Q ss_pred             HhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccc-cccCCCcHHHHHHHc
Q 038664           81 RAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICY-INKAGQSPLSLAIDA  159 (464)
Q Consensus        81 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~g~t~l~~A~~~  159 (464)
                      ..|..++|++||..+++..          .++-...|||.+|...|..+++..|+..|.++... -.+.|-+||..|...
T Consensus       833 sggr~~vvelLl~~ganke----------hrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmn  902 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGANKE----------HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMN  902 (2131)
T ss_pred             CCCcchHHHHHHHhhcccc----------ccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhc
Confidence            9999999999999998855          67778899999999999999999999999886432 256788999999999


Q ss_pred             CCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhc
Q 038664          160 GLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDE  239 (464)
Q Consensus       160 g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~  239 (464)
                      |+....+.|++.+.++......+..|+|..|+..|..+++..||..... +..+-..|.|||+-++..|.+|+-+.|++.
T Consensus       903 gh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~an-vehRaktgltplme~AsgGyvdvg~~li~~  981 (2131)
T KOG4369|consen  903 GHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQAN-VEHRAKTGLTPLMEMASGGYVDVGNLLIAA  981 (2131)
T ss_pred             cccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhh-hhhhcccCCcccchhhcCCccccchhhhhc
Confidence            9999999999999998667777889999999999999999999999887 788889999999999999999999999999


Q ss_pred             CCCccccc-cCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccC
Q 038664          240 DDTLAYER-DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSD  318 (464)
Q Consensus       240 ~~~~~~~~-~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d  318 (464)
                      |++.+... -....|+|-+++..|+...++.|+...+. +..++++|.|+|..|+..|+...+..|++.   +++++..|
T Consensus       982 gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~at-v~v~NkkG~T~Lwla~~Gg~lss~~il~~~---~ad~d~qd 1057 (2131)
T KOG4369|consen  982 GADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDAT-VRVPNKKGCTVLWLASAGGALSSCPILVSS---VADADQQD 1057 (2131)
T ss_pred             ccccccCCCCCcCCccceeecCCCchhhhHHhhCCccc-eecccCCCCcccchhccCCccccchHHhhc---ccChhhhh
Confidence            99887533 23445899999999999999999987666 699999999999999999999999999988   78899999


Q ss_pred             CCCCcHHHHHHHcCCchHHHHHH
Q 038664          319 LEGNTPLHLAAINNHFNIVLILA  341 (464)
Q Consensus       319 ~~g~t~Lh~A~~~~~~~~v~~Ll  341 (464)
                      +..+++++.|.+.|+.+||++..
T Consensus      1058 nr~~S~~maafRKgh~~iVk~mv 1080 (2131)
T KOG4369|consen 1058 NRTNSRTMAAFRKGHFAIVKKMV 1080 (2131)
T ss_pred             cccccccHHHHHhchhheecccc
Confidence            99999999999999999998876

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=9.9e-29  Score=210.84  Aligned_cols=176  Identities=19%  Similarity=0.181  Sum_probs=152.2

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcC--CHHHHHHHhhcCCCccccccCCCCCccccc
Q 038664          181 PNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALG--HFEIACRLSDEDDTLAYERDCNGQSPLHLA  258 (464)
Q Consensus       181 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~--~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A  258 (464)
                      ..+.+||++|+..++.+.++.|++.    ++..+..|.||||+|+..+  +.+++++|+++|++++...+..|.||||+|
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            3457899999999999999998864    4567889999999998754  899999999999998843345899999998


Q ss_pred             cc---CCcHHHHHHHHHHCCCcccccccCCCchhHHHHh--cCchHHHHHHhcCcchhhhhhccCCCCCcHHHH-HHHcC
Q 038664          259 SE---NGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQ--NGHANVVVFISKLPEIEDMINSSDLEGNTPLHL-AAINN  332 (464)
Q Consensus       259 ~~---~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~--~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~-A~~~~  332 (464)
                      +.   .++.+++++|+++|++ ++.+|..|+||||+|+.  .++.+++++|++.   +++++.+|..|+||||. |+..+
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~---gadin~~d~~g~t~Lh~~a~~~~  170 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS---GVSFLNKDFDNNNILYSYILFHS  170 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc---CCCcccccCCCCcHHHHHHHhcC
Confidence            75   3579999999999988 59999999999999886  4689999999987   78899999999999995 56688


Q ss_pred             CchHHHHHHhccccccccccccCCChHHhhccC
Q 038664          333 HFNIVLILARNMRVNIRATNEKKQTALAIVQPS  365 (464)
Q Consensus       333 ~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~  365 (464)
                      +.+++++|++. |++++.+|..|+||+++|..+
T Consensus       171 ~~~iv~~Ll~~-Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        171 DKKIFDFLTSL-GIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             CHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhhh
Confidence            99999999976 999999999999999999843

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.96  E-value=1.8e-29  Score=242.03  Aligned_cols=319  Identities=18%  Similarity=0.229  Sum_probs=286.8

Q ss_pred             cCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCC
Q 038664           35 SQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEE  114 (464)
Q Consensus        35 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  114 (464)
                      ..+-.|+|-.||..|+.|.|+.|+.+|++ +..+|..|.+||.+|+..||..+|+.|+.+.++..         ...|+.
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rgan-iehrdkkgf~plImaatagh~tvV~~llk~ha~ve---------aQsdrt  823 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGAN-IEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVE---------AQSDRT  823 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhccc-ccccccccchhhhhhcccCchHHHHHHHhhhhhhh---------hhcccc
Confidence            45678999999999999999999999999 77899999999999999999999999999888743         467889


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCC--CCCCCCHHHHHHH
Q 038664          115 GNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHR--GPNDLTLLHIAII  192 (464)
Q Consensus       115 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~--~~~~~~~l~~a~~  192 (464)
                      +.|+|.+||..|+.+++++||..+++. ..++-...|||.+|...|+.+++..|+..|..+ +.+  ...|..||+.|.+
T Consensus       824 kdt~lSlacsggr~~vvelLl~~gank-ehrnvsDytPlsla~Sggy~~iI~~llS~GseI-nSrtgSklgisPLmlatm  901 (2131)
T KOG4369|consen  824 KDTMLSLACSGGRTRVVELLLNAGANK-EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEI-NSRTGSKLGISPLMLATM  901 (2131)
T ss_pred             cCceEEEecCCCcchHHHHHHHhhccc-cccchhhcCchhhhcCcchHHHHHHHhhccccc-ccccccccCcchhhhhhh
Confidence            999999999999999999999999984 567888999999999999999999999999877 333  3557899999999


Q ss_pred             cCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHH
Q 038664          193 KSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLH  272 (464)
Q Consensus       193 ~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  272 (464)
                      +|+....+.|++.+.++......+.+|+|.+|+..|+.+++..||...+... .+-..|.|||+.++..|.+++-+.|+.
T Consensus       902 ngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anve-hRaktgltplme~AsgGyvdvg~~li~  980 (2131)
T KOG4369|consen  902 NGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVE-HRAKTGLTPLMEMASGGYVDVGNLLIA  980 (2131)
T ss_pred             ccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhh-hhcccCCcccchhhcCCccccchhhhh
Confidence            9999999999999988545556778899999999999999999999998887 578889999999999999999999999


Q ss_pred             HCCCccccc--ccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhcccccccc
Q 038664          273 SYPDSIEFL--DKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRA  350 (464)
Q Consensus       273 ~~~~~~~~~--d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~  350 (464)
                      .|+|. +.-  -..-.|+|-+++..|+...+..|+..   .+.+..++++|+|+|-+|+..|+...+..|+++ ++|++.
T Consensus       981 ~gad~-nasPvp~T~dtalti~a~kGh~kfv~~lln~---~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~-~ad~d~ 1055 (2131)
T KOG4369|consen  981 AGADT-NASPVPNTWDTALTIPANKGHTKFVPKLLNG---DATVRVPNKKGCTVLWLASAGGALSSCPILVSS-VADADQ 1055 (2131)
T ss_pred             ccccc-ccCCCCCcCCccceeecCCCchhhhHHhhCC---ccceecccCCCCcccchhccCCccccchHHhhc-ccChhh
Confidence            99984 432  23456999999999999999999876   566788999999999999999999999999986 999999


Q ss_pred             ccccCCChHHhhccCchhhHH
Q 038664          351 TNEKKQTALAIVQPSLHQNDI  371 (464)
Q Consensus       351 ~n~~g~t~l~~a~~~~~~~~~  371 (464)
                      .|+...++++-|.+.+|.+++
T Consensus      1056 qdnr~~S~~maafRKgh~~iV 1076 (2131)
T KOG4369|consen 1056 QDNRTNSRTMAAFRKGHFAIV 1076 (2131)
T ss_pred             hhcccccccHHHHHhchhhee
Confidence            999999999999988887665

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.7e-26  Score=211.24  Aligned_cols=235  Identities=11%  Similarity=0.031  Sum_probs=164.5

Q ss_pred             cCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCcccc------ccccCCCCHHHHHHH--hCCH
Q 038664           14 RGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVS------VENHKSETPMHVAAR--AGNF   85 (464)
Q Consensus        14 ~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~------~~~~~g~t~L~~A~~--~g~~   85 (464)
                      .+-.+.+-+++..++.+++..+.+|     +|+..+..++++.|+.+|++ ++      .++..++|+||+|+.  .|+.
T Consensus        58 ~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~-~~~~~~~~~~~~~~~~~L~~~~~n~~n~~  131 (437)
T PHA02795         58 CDPVDVLYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYM-EDIFSIIIKNCNSVQDLLLYYLSNAYVEI  131 (437)
T ss_pred             CCHHHHHHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccc-cchhhhhhhccccccHHHHHHHHhcCCCH
Confidence            3445556566666666777666665     78888888888888888877 33      466778888888888  7788


Q ss_pred             HHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccc-----ccCCCcHHHHHHHcC
Q 038664           86 GVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYI-----NKAGQSPLSLAIDAG  160 (464)
Q Consensus        86 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-----~~~g~t~l~~A~~~g  160 (464)
                      ++|++|+++|++.+          .  .++.||||.|+..++.+++++|+++|+...+..     +..+.+++|.|...+
T Consensus       132 eiV~~LI~~GADIn----------~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~  199 (437)
T PHA02795        132 DIVDFMVDHGAVIY----------K--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPT  199 (437)
T ss_pred             HHHHHHHHCCCCCC----------C--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcC
Confidence            88888888888754          2  244788888888888888888888886432222     123567777777777


Q ss_pred             CHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCC--------HHH
Q 038664          161 LTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGH--------FEI  232 (464)
Q Consensus       161 ~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~--------~~~  232 (464)
                      +.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|++.|++ ++..+..|.||||+|+..|+        .++
T Consensus       200 ~~eIve~LIs~GADI-N~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd-IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eI  277 (437)
T PHA02795        200 VLEIYKLCIPYIEDI-NQLDAGGRTLLYRAIYAGYIDLVSWLLENGAN-VNAVMSNGYTCLDVAVDRGSVIARRETHLKI  277 (437)
T ss_pred             HHHHHHHHHhCcCCc-CcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCcccccccHHHH
Confidence            778888888777776 77777777888888877888888888877776 67777778888888877773        577


Q ss_pred             HHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHC
Q 038664          233 ACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSY  274 (464)
Q Consensus       233 v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  274 (464)
                      ++.|++++++....    ..+++...  ..+.++++.++++.
T Consensus       278 velLL~~gadI~~~----~~~~~~~~--~~n~~~ik~lI~y~  313 (437)
T PHA02795        278 LEILLREPLSIDCI----KLAILNNT--IENHDVIKLCIKYF  313 (437)
T ss_pred             HHHHHhCCCCCCch----hHHhhhcc--cchHHHHHHHHHHH
Confidence            77777777765531    11222111  12567777777654

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.95  E-value=2.1e-28  Score=194.21  Aligned_cols=240  Identities=20%  Similarity=0.209  Sum_probs=214.9

Q ss_pred             hcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHH
Q 038664          110 KQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHI  189 (464)
Q Consensus       110 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~  189 (464)
                      .++..|..-+-.+...++.+++.....-.++.+...+.+|++.++.+.-.++...+...+.++... +..+..+++|+.+
T Consensus        57 ~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rg-nevs~~p~s~~sl  135 (296)
T KOG0502|consen   57 LRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARG-NEVSLMPWSPLSL  135 (296)
T ss_pred             HHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccC-CccccccCChhhH
Confidence            355667777788889999999999888888877788888999999999999999999999988887 7888889999999


Q ss_pred             HHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHH
Q 038664          190 AIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKR  269 (464)
Q Consensus       190 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  269 (464)
                      ++.+.+.+....+.+..   +|..|+.|.|||.||+.+|++++|++|++.|+++. .......++|.+|++.|..++|+.
T Consensus       136 sVhql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~-~lgk~resALsLAt~ggytdiV~l  211 (296)
T KOG0502|consen  136 SVHQLHLDVVDLLVNNK---VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPD-ALGKYRESALSLATRGGYTDIVEL  211 (296)
T ss_pred             HHHHHHHHHHHHHhhcc---ccCccccCchHhHHHHhcCchHHHHHHHHcCCChh-hhhhhhhhhHhHHhcCChHHHHHH
Confidence            99888887777666654   78999999999999999999999999999999988 567777899999999999999999


Q ss_pred             HHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccc
Q 038664          270 LLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIR  349 (464)
Q Consensus       270 Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~  349 (464)
                      ||..+++ +|..|.+|-|||-+|++.++.++++.|+..   |++++..|..|++++.+|+..|+. +|+..+++ -++..
T Consensus       212 LL~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll~s---GAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~-h~lkl  285 (296)
T KOG0502|consen  212 LLTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLLNS---GADVTQEDDSGYWIMDLAVALGYR-IVQQVIEK-HALKL  285 (296)
T ss_pred             HHhcCCC-cceeccCCCceeeeeecCChHHHHHHHHhc---CCCcccccccCCcHHHHHHHhhhH-HHHHHHHH-HHHHH
Confidence            9999999 699999999999999999999999999988   899999999999999999999987 88888865 78888


Q ss_pred             cccccCCChHH
Q 038664          350 ATNEKKQTALA  360 (464)
Q Consensus       350 ~~n~~g~t~l~  360 (464)
                      .+|+.-+||+|
T Consensus       286 ~Q~~~~~~~~~  296 (296)
T KOG0502|consen  286 CQDSEKRTPLH  296 (296)
T ss_pred             hhcccCCCCCC
Confidence            88888888864

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.4e-26  Score=211.75  Aligned_cols=233  Identities=14%  Similarity=0.050  Sum_probs=187.1

Q ss_pred             HHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHH--cCCHHHH
Q 038664           54 VMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVR--KCDGKMA  131 (464)
Q Consensus        54 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~--~~~~~~~  131 (464)
                      -++++.+|++ ++.+..+|     +|+..+..|++++|+.++++.+.-   ...+ ..+..++|+||+++.  .|+.+++
T Consensus        65 ~~~~~~~~~~-i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~---~~~~-~~~~~~~~~L~~~~~n~~n~~eiV  134 (437)
T PHA02795         65 YDYFRIHRDN-IDQYIVDR-----LFAYITYKDIISALVSKNYMEDIF---SIII-KNCNSVQDLLLYYLSNAYVEIDIV  134 (437)
T ss_pred             HHHHHHcCcc-hhhhhhhh-----HHhhcchHHHHHHHHhcccccchh---hhhh-hccccccHHHHHHHHhcCCCHHHH
Confidence            4788888887 66666666     999999999999999999985411   1111 477789999999999  8999999


Q ss_pred             HHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCC-----CCCCCCHHHHHHHcCCHHHHHHHHHhC
Q 038664          132 FTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHR-----GPNDLTLLHIAIIKSNFVVMAKILEAK  206 (464)
Q Consensus       132 ~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~-----~~~~~~~l~~a~~~~~~~~~~~ll~~~  206 (464)
                      ++|+++|+++. .  .++.||+|.|+..++.+++++|+++|....+..     +..+.+++|.|...++.++++.|++++
T Consensus       135 ~~LI~~GADIn-~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~G  211 (437)
T PHA02795        135 DFMVDHGAVIY-K--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYI  211 (437)
T ss_pred             HHHHHCCCCCC-C--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCc
Confidence            99999999963 3  356899999999999999999999997543332     234678899999999999999999999


Q ss_pred             chhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCc--------HHHHHHHHHHCCCcc
Q 038664          207 RDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGK--------LSLLKRLLHSYPDSI  278 (464)
Q Consensus       207 ~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~--------~~~v~~Ll~~~~~~~  278 (464)
                      ++ ++.+|..|.||||+|+..|+.+++++|+++|++++ .++..|.||||.|+..|+        .++++.|++++++. 
T Consensus       212 AD-IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN-~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI-  288 (437)
T PHA02795        212 ED-INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN-AVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSI-  288 (437)
T ss_pred             CC-cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCC-
Confidence            87 89999999999999999999999999999999888 688899999999999884        68999999988873 


Q ss_pred             cccccCCCchhHHHHhcCchHHHHHHhcC
Q 038664          279 EFLDKKNRNILHLAAQNGHANVVVFISKL  307 (464)
Q Consensus       279 ~~~d~~g~t~L~~A~~~~~~~~~~~L~~~  307 (464)
                      +..+.   +++...  ..+.++++.+++.
T Consensus       289 ~~~~~---~~~~~~--~~n~~~ik~lI~y  312 (437)
T PHA02795        289 DCIKL---AILNNT--IENHDVIKLCIKY  312 (437)
T ss_pred             CchhH---Hhhhcc--cchHHHHHHHHHH
Confidence            44332   222211  1256677776665

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.9e-26  Score=195.68  Aligned_cols=176  Identities=22%  Similarity=0.180  Sum_probs=95.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcC--CHHHHHHHHHhcCcCcCCCCCCCCCHHHH
Q 038664          112 DEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAG--LTHIACCIIKEKLSVLDHRGPNDLTLLHI  189 (464)
Q Consensus       112 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g--~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~  189 (464)
                      ...+.|||++|+..|+.+.++.|++..    +..+..|.||||+|+..+  +.+++++|+++++++              
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv--------------   79 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFV----NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV--------------   79 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhh----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC--------------
Confidence            344566666666666666666665431    233455555555555432  455555555555544              


Q ss_pred             HHHcCCHHHHHHHHHhCchhhhhhc-CCCCcHHHHHHHc---CCHHHHHHHhhcCCCccccccCCCCCccccccc--CCc
Q 038664          190 AIIKSNFVVMAKILEAKRDLINVLD-KRDRNPLHYAAAL---GHFEIACRLSDEDDTLAYERDCNGQSPLHLASE--NGK  263 (464)
Q Consensus       190 a~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t~L~~a~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~--~g~  263 (464)
                                           +..+ ..|.||||+|+..   ++.+++++|+++|++++ .+|..|.||||.|+.  .++
T Consensus        80 ---------------------n~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin-~~d~~G~TpLh~a~~~~~~~  137 (209)
T PHA02859         80 ---------------------NFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSIT-EEDEDGKNLLHMYMCNFNVR  137 (209)
T ss_pred             ---------------------CccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhccCC
Confidence                                 3333 2445555544432   24555555555555554 355555555555543  345


Q ss_pred             HHHHHHHHHHCCCcccccccCCCchhHH-HHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHc
Q 038664          264 LSLLKRLLHSYPDSIEFLDKKNRNILHL-AAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAIN  331 (464)
Q Consensus       264 ~~~v~~Ll~~~~~~~~~~d~~g~t~L~~-A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~  331 (464)
                      .+++++|++.+.+ ++.+|.+|.||||. |+..++.+++++|++.   |++++.+|..|.||||+|...
T Consensus       138 ~~iv~~Li~~gad-in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~---Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        138 INVIKLLIDSGVS-FLNKDFDNNNILYSYILFHSDKKIFDFLTSL---GIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             HHHHHHHHHcCCC-cccccCCCCcHHHHHHHhcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHhhh
Confidence            5666666666655 35566666666663 3445566666666655   455666666666666666554

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=2.5e-27  Score=188.19  Aligned_cols=264  Identities=22%  Similarity=0.208  Sum_probs=175.7

Q ss_pred             chhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHH
Q 038664           40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPL  119 (464)
Q Consensus        40 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L  119 (464)
                      ..+..++..|-.+--..|......   .++..|..-+-.+.+.++.+++..++....+..         ...+.+|..++
T Consensus        33 a~~~~~~~m~~t~p~~~l~~~~s~---~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~---------~~t~p~g~~~~  100 (296)
T KOG0502|consen   33 AELFEQVEMGTTEPRCALTAEISA---LRNALGESLLTVAVRSGNSDVAVQSAQLDPDAI---------DETDPEGWSAL  100 (296)
T ss_pred             HHHHHHhhccccchhHHHHHHHHH---HHHhcCCcccchhhhcCCcHHHHHhhccCCCCC---------CCCCchhhhhh
Confidence            445555555544444444333211   234445555555666666665555554433321         22344466666


Q ss_pred             HHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHH
Q 038664          120 HNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVM  199 (464)
Q Consensus       120 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  199 (464)
                      +.+.-.++...+..++.++.. .+..+.-+.+|+.+++..-+.+.+..+.+..   .+..|..|.|||.||+..|+.+++
T Consensus       101 ~v~ap~~s~~k~sttltN~~r-gnevs~~p~s~~slsVhql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa~G~i~vV  176 (296)
T KOG0502|consen  101 LVAAPCGSVDKVSTTLTNGAR-GNEVSLMPWSPLSLSVHQLHLDVVDLLVNNK---VNACDEFGFTPLIWAAAKGHIPVV  176 (296)
T ss_pred             hhcCCCCCcceeeeeeccccc-CCccccccCChhhHHHHHHHHHHHHHHhhcc---ccCccccCchHhHHHHhcCchHHH
Confidence            666666666666666666555 3445556666776666666555555444432   366777788888888888888888


Q ss_pred             HHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCccc
Q 038664          200 AKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIE  279 (464)
Q Consensus       200 ~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  279 (464)
                      ++|++.|++ +....++..++|.+|++.|..++|+.|++++.+.+ ..|.+|-|||.+|++.++.++++.|+..|++ ++
T Consensus       177 ~fLL~~GAd-p~~lgk~resALsLAt~ggytdiV~lLL~r~vdVN-vyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd-~t  253 (296)
T KOG0502|consen  177 QFLLNSGAD-PDALGKYRESALSLATRGGYTDIVELLLTREVDVN-VYDWNGGTPLLYAVRGNHVKCVESLLNSGAD-VT  253 (296)
T ss_pred             HHHHHcCCC-hhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcc-eeccCCCceeeeeecCChHHHHHHHHhcCCC-cc
Confidence            888888877 67777778888888888888888888888888877 6788888888888888888888888888888 48


Q ss_pred             ccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHH
Q 038664          280 FLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLH  326 (464)
Q Consensus       280 ~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh  326 (464)
                      ..+..|.+++..|+..|+. +++..++.   -.+.+.+|..-.||+|
T Consensus       254 ~e~dsGy~~mdlAValGyr-~Vqqvie~---h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  254 QEDDSGYWIMDLAVALGYR-IVQQVIEK---HALKLCQDSEKRTPLH  296 (296)
T ss_pred             cccccCCcHHHHHHHhhhH-HHHHHHHH---HHHHHhhcccCCCCCC
Confidence            8888888888888888877 55555544   3556677777777765

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.94  E-value=3.8e-26  Score=212.68  Aligned_cols=251  Identities=22%  Similarity=0.255  Sum_probs=205.6

Q ss_pred             cccHHHHHHHHcCCHHHHHHHHhhcC------------CCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCcccccccc
Q 038664            3 TVARVLFRALRRGDAATVRESARLNG------------NGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENH   70 (464)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~------------~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~   70 (464)
                      .+++.+..|++.||.+.+..+|+..+            ...+..|.+|.|+||.||.+|+.++++.|++..+- +...+.
T Consensus         2 gk~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~-ldl~d~   80 (854)
T KOG0507|consen    2 GKKQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEAL-LDLCDT   80 (854)
T ss_pred             chhhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhh-hhhhhc
Confidence            36789999999999999999998443            23556788999999999999999999999998876 677889


Q ss_pred             CCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCC
Q 038664           71 KSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQ  150 (464)
Q Consensus        71 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  150 (464)
                      .|.+|||+|++.|+.+++++|+.++..          ++..+..|.||||.|++.|+.+++.+|+.++++ ...+|..+.
T Consensus        81 kg~~plhlaaw~g~~e~vkmll~q~d~----------~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad-p~i~nns~~  149 (854)
T KOG0507|consen   81 KGILPLHLAAWNGNLEIVKMLLLQTDI----------LNAVNIENETPLHLAAQHGHLEVVFYLLKKNAD-PFIRNNSKE  149 (854)
T ss_pred             cCcceEEehhhcCcchHHHHHHhcccC----------CCcccccCcCccchhhhhcchHHHHHHHhcCCC-ccccCcccc
Confidence            999999999999999999999988854          557889999999999999999999999999999 578899999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCH
Q 038664          151 SPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHF  230 (464)
Q Consensus       151 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~  230 (464)
                      |++..|++.|..++++.|+...-.. ..                       +...+   -..++..+-+|||.|+++|+.
T Consensus       150 t~ldlA~qfgr~~Vvq~ll~~~~~~-~~-----------------------~~~~~---~~~~~~~~~~plHlaakngh~  202 (854)
T KOG0507|consen  150 TVLDLASRFGRAEVVQMLLQKKFPV-QS-----------------------SLRVG---DIKRPFPAIYPLHLAAKNGHV  202 (854)
T ss_pred             cHHHHHHHhhhhHHHHHHhhhccch-hh-----------------------cccCC---CCCCCCCCcCCcchhhhcchH
Confidence            9999999999999999999862211 00                       11111   123455677888888888888


Q ss_pred             HHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhc
Q 038664          231 EIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQN  295 (464)
Q Consensus       231 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~  295 (464)
                      ++++.|++.|.++++ .. ..-|+||.|+..|..++|++|++.|... ..++.+|+|+|.+....
T Consensus       203 ~~~~~ll~ag~din~-~t-~~gtalheaalcgk~evvr~ll~~gin~-h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  203 ECMQALLEAGFDINY-TT-EDGTALHEAALCGKAEVVRFLLEIGINT-HIKNQHGQTALDIIIDL  264 (854)
T ss_pred             HHHHHHHhcCCCccc-cc-ccchhhhhHhhcCcchhhhHHHhhcccc-ccccccchHHHHHHHhc
Confidence            888888888888874 33 2347888888888888888888888774 78888888888776654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=4.6e-25  Score=225.03  Aligned_cols=231  Identities=16%  Similarity=0.139  Sum_probs=164.3

Q ss_pred             ccHHHHHHHHcCCHHHHHHHHhhc-CCCcccccCCCCchhH-HHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHH
Q 038664            4 VARVLFRALRRGDAATVRESARLN-GNGILDMSQNRDTALH-IAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAAR   81 (464)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~~g~t~Lh-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~   81 (464)
                      .+..++.|++.||.+.++.+++.. +.++|..|..|+|||| .|+..++.++++.|++.+.     .+..|.||||.|+.
T Consensus        17 ~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~   91 (743)
T TIGR00870        17 EEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISL   91 (743)
T ss_pred             HHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHh
Confidence            357899999999999999999762 4577888999999999 8888999999999999886     57789999999997


Q ss_pred             h---CCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccc-------------
Q 038664           82 A---GNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYI-------------  145 (464)
Q Consensus        82 ~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-------------  145 (464)
                      .   +..++++.+.+.+..........+.....+..|.||||+|+..|+.+++++|+++|+++....             
T Consensus        92 ~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~  171 (743)
T TIGR00870        92 EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDS  171 (743)
T ss_pred             ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCc
Confidence            2   223344444444322110000000011234579999999999999999999999998864211             


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCC---------HHHHHHHHHhCch--hh----
Q 038664          146 NKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSN---------FVVMAKILEAKRD--LI----  210 (464)
Q Consensus       146 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~---------~~~~~~ll~~~~~--~~----  210 (464)
                      ...|.+||+.|+..|+.++++.|+++++++ +..+..|.||||+|+..+.         ..+.+.+++.+..  ..    
T Consensus       172 ~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi-n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~  250 (743)
T TIGR00870       172 FYHGESPLNAAACLGSPSIVALLSEDPADI-LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELE  250 (743)
T ss_pred             ccccccHHHHHHHhCCHHHHHHHhcCCcch-hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhh
Confidence            134778888888888888888888877765 6777778888888877651         1233333333221  01    


Q ss_pred             hhhcCCCCcHHHHHHHcCCHHHHHHHhhcC
Q 038664          211 NVLDKRDRNPLHYAAALGHFEIACRLSDED  240 (464)
Q Consensus       211 ~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~  240 (464)
                      +..|.+|.||||+|+..|+.++++.|++.+
T Consensus       251 ~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       251 VILNHQGLTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             hhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence            455777888888888888888888887754

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.93  E-value=2.3e-25  Score=207.55  Aligned_cols=241  Identities=24%  Similarity=0.260  Sum_probs=212.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhC------------CccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCC
Q 038664          117 TPLHNAVRKCDGKMAFTMIRKD------------PELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDL  184 (464)
Q Consensus       117 t~L~~A~~~~~~~~~~~Ll~~~------------~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~  184 (464)
                      +=|..|++.|+++.+..|++..            ++-.+..|.+|.|.||.|+.+|+.++++.|+++.+.. +..+..|.
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d~kg~   83 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDTKGI   83 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhhccCc
Confidence            3466789999999999999863            1224566889999999999999999999999988876 77779999


Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcH
Q 038664          185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKL  264 (464)
Q Consensus       185 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  264 (464)
                      +|||+|+..|+.++++.++.+... ++..+..|.||||.|++.|+.+++.+|+.+++++. .++..+.|++..|++.|..
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~d~-~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~-i~nns~~t~ldlA~qfgr~  161 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQTDI-LNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPF-IRNNSKETVLDLASRFGRA  161 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcccC-CCcccccCcCccchhhhhcchHHHHHHHhcCCCcc-ccCcccccHHHHHHHhhhh
Confidence            999999999999999999999955 89999999999999999999999999999999998 6899999999999999999


Q ss_pred             HHHHHHHHHCCCc-------ccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHH
Q 038664          265 SLLKRLLHSYPDS-------IEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIV  337 (464)
Q Consensus       265 ~~v~~Ll~~~~~~-------~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v  337 (464)
                      ++++.|++..-..       -..++..+.+|||.|+++|+.++++.|+..   |.++|.....| |+||.|+..|..++|
T Consensus       162 ~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~a---g~din~~t~~g-talheaalcgk~evv  237 (854)
T KOG0507|consen  162 EVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEA---GFDINYTTEDG-TALHEAALCGKAEVV  237 (854)
T ss_pred             HHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhc---CCCcccccccc-hhhhhHhhcCcchhh
Confidence            9999999872110       123455678999999999999999999988   78888887777 999999999999999


Q ss_pred             HHHHhccccccccccccCCChHHhhccC
Q 038664          338 LILARNMRVNIRATNEKKQTALAIVQPS  365 (464)
Q Consensus       338 ~~Ll~~~~~d~~~~n~~g~t~l~~a~~~  365 (464)
                      ++|+.- |++..++|.+|+|+|++....
T Consensus       238 r~ll~~-gin~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  238 RFLLEI-GINTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             hHHHhh-ccccccccccchHHHHHHHhc
Confidence            999964 999999999999999998843

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=5.4e-25  Score=224.53  Aligned_cols=242  Identities=20%  Similarity=0.189  Sum_probs=187.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHh--CCccccccccCCCcHHH-HHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHH
Q 038664          113 EEGNTPLHNAVRKCDGKMAFTMIRK--DPELICYINKAGQSPLS-LAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHI  189 (464)
Q Consensus       113 ~~g~t~L~~A~~~~~~~~~~~Ll~~--~~~~~~~~~~~g~t~l~-~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~  189 (464)
                      ..++.+++.|+..|+.+.++.+++.  +.+ .+..|..|+|||| .|+..++.++++.|++.+.     .+..|.||||.
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~-in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~   88 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLN-INCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHA   88 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccC-CCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHH
Confidence            3567899999999999999999998  555 4667899999999 8999999999999999875     56779999999


Q ss_pred             HHHcCCHHHH----HHHHHhCch-----hhh----hhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccc---------
Q 038664          190 AIIKSNFVVM----AKILEAKRD-----LIN----VLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYER---------  247 (464)
Q Consensus       190 a~~~~~~~~~----~~ll~~~~~-----~~~----~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~---------  247 (464)
                      |+.. ..+.+    ..+....+.     ..+    ..+..|.||||+|+.+|+.+++++|+++|++++...         
T Consensus        89 A~~~-~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~  167 (743)
T TIGR00870        89 ISLE-YVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQ  167 (743)
T ss_pred             HHhc-cHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCC
Confidence            9873 23333    333333321     011    123569999999999999999999999999887321         


Q ss_pred             ----cCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcC---------chHHHHHHhcCcchhhhh
Q 038664          248 ----DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNG---------HANVVVFISKLPEIEDMI  314 (464)
Q Consensus       248 ----~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~---------~~~~~~~L~~~~~~~~~~  314 (464)
                          ...|.||||.|+..|+.+++++|++++++ ++.+|..|+||||+|+..+         ...+.++++.........
T Consensus       168 ~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad-in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~  246 (743)
T TIGR00870       168 GVDSFYHGESPLNAAACLGSPSIVALLSEDPAD-ILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDS  246 (743)
T ss_pred             CCCcccccccHHHHHHHhCCHHHHHHHhcCCcc-hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCh
Confidence                13589999999999999999999999887 5999999999999999986         234556666664433333


Q ss_pred             ----hccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhc
Q 038664          315 ----NSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQ  363 (464)
Q Consensus       315 ----~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~  363 (464)
                          +..|.+|.||||+|+..|+.+++++|++. +.+.+........|...+.
T Consensus       247 ~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~-~~~~kk~~a~~~~~~~~~~  298 (743)
T TIGR00870       247 KELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI-KYKQKKFVAWPNGQQLLSL  298 (743)
T ss_pred             HhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH-HHhcceeeccCcchHhHhh
Confidence                67899999999999999999999999964 4444444445555544443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=2.8e-24  Score=220.31  Aligned_cols=177  Identities=23%  Similarity=0.288  Sum_probs=162.0

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCccccc
Q 038664          179 RGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLA  258 (464)
Q Consensus       179 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A  258 (464)
                      .+....++|+.|+..|+.++++.|++.+.+ ++..|.+|+||||+|+..|+.+++++|+++|++++ .+|.+|+||||.|
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d-~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin-~~d~~G~TpL~~A  598 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLD-PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVH-IRDANGNTALWNA  598 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCC-CcCCCCCCHHHHH
Confidence            344567899999999999999999999988 89999999999999999999999999999999987 6899999999999


Q ss_pred             ccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHH
Q 038664          259 SENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVL  338 (464)
Q Consensus       259 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~  338 (464)
                      +..|+.++++.|++.+... +  ...+.++||.|+.+|+.+++++|++.   |+++|.+|.+|+||||+|+..|+.++++
T Consensus       599 ~~~g~~~iv~~L~~~~~~~-~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~---Gadin~~d~~G~TpLh~A~~~g~~~iv~  672 (823)
T PLN03192        599 ISAKHHKIFRILYHFASIS-D--PHAAGDLLCTAAKRNDLTAMKELLKQ---GLNVDSEDHQGATALQVAMAEDHVDMVR  672 (823)
T ss_pred             HHhCCHHHHHHHHhcCccc-C--cccCchHHHHHHHhCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHCCcHHHHH
Confidence            9999999999999776542 2  35678999999999999999999987   7899999999999999999999999999


Q ss_pred             HHHhccccccccccccC-CChHHhhcc
Q 038664          339 ILARNMRVNIRATNEKK-QTALAIVQP  364 (464)
Q Consensus       339 ~Ll~~~~~d~~~~n~~g-~t~l~~a~~  364 (464)
                      +|+++ |+|++.+|..| .||.+++..
T Consensus       673 ~Ll~~-GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        673 LLIMN-GADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             HHHHc-CCCCCCCCCCCCCCHHHHHHH
Confidence            99976 99999999999 999988863

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=7.2e-23  Score=209.94  Aligned_cols=181  Identities=20%  Similarity=0.239  Sum_probs=162.4

Q ss_pred             ccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCC
Q 038664           34 MSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDE  113 (464)
Q Consensus        34 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  113 (464)
                      .++.+.++||.||..|+.++++.|++.|++ ++..|..|.||||+|+..|+.+++++|+++|++.          +.+|.
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d-~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi----------n~~d~  589 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLD-PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV----------HIRDA  589 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC----------CCcCC
Confidence            455678999999999999999999999999 7889999999999999999999999999999884          47899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHc
Q 038664          114 EGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIK  193 (464)
Q Consensus       114 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~  193 (464)
                      +|.||||+|+..|+.+++++|++.+...   ....+.++||.|+..|+.++++.|+++|.++ +..+..|.||||.|+..
T Consensus       590 ~G~TpL~~A~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi-n~~d~~G~TpLh~A~~~  665 (823)
T PLN03192        590 NGNTALWNAISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLNV-DSEDHQGATALQVAMAE  665 (823)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHC
Confidence            9999999999999999999999876553   2456779999999999999999999999998 88999999999999999


Q ss_pred             CCHHHHHHHHHhCchhhhhhcCCC-CcHHHHHHHcCCH
Q 038664          194 SNFVVMAKILEAKRDLINVLDKRD-RNPLHYAAALGHF  230 (464)
Q Consensus       194 ~~~~~~~~ll~~~~~~~~~~~~~g-~t~L~~a~~~~~~  230 (464)
                      |+.+++++|++++++ ++..+..| .+|+..+......
T Consensus       666 g~~~iv~~Ll~~GAd-v~~~~~~g~~t~~~l~~~~~~~  702 (823)
T PLN03192        666 DHVDMVRLLIMNGAD-VDKANTDDDFSPTELRELLQKR  702 (823)
T ss_pred             CcHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHHHHh
Confidence            999999999999988 78888877 8999887664433

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.90  E-value=5.5e-23  Score=185.21  Aligned_cols=229  Identities=24%  Similarity=0.292  Sum_probs=171.1

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCC
Q 038664            5 ARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGN   84 (464)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~   84 (464)
                      ...++.|+..||.+.++.+|..++ +++..+.+|.|+||-+|...+.++|++|+++|++ ++..|..|+||||.|+.+|+
T Consensus        41 sa~~l~A~~~~d~~ev~~ll~~ga-~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~-Vn~~d~e~wtPlhaaascg~  118 (527)
T KOG0505|consen   41 SAVFLEACSRGDLEEVRKLLNRGA-SPNLCNVDGLTALHQACIDDNLEMVKFLVENGAN-VNAQDNEGWTPLHAAASCGY  118 (527)
T ss_pred             hHHHHhccccccHHHHHHHhccCC-CccccCCccchhHHHHHhcccHHHHHHHHHhcCC-ccccccccCCcchhhccccc
Confidence            357888999999999999998764 7788999999999999999999999999999999 88899999999999999999


Q ss_pred             HHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCC---
Q 038664           85 FGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGL---  161 (464)
Q Consensus        85 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~---  161 (464)
                      ..++++|+.+|++          +...|.+|..|+..+......+++..-+..          .|.+ +..+-....   
T Consensus       119 ~~i~~~li~~gA~----------~~avNsdg~~P~dl~e~ea~~~~l~~~~~r----------~gi~-iea~R~~~e~~m  177 (527)
T KOG0505|consen  119 LNIVEYLIQHGAN----------LLAVNSDGNMPYDLAEDEATLDVLETEMAR----------QGID-IEAARKAEEQTM  177 (527)
T ss_pred             HHHHHHHHHhhhh----------hhhccCCCCCccccccCcchhHHHHHHHHH----------hccc-HHHHhhhhHHHH
Confidence            9999999999988          446788888888777654444444333322          1111 111111111   


Q ss_pred             -HHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcC
Q 038664          162 -THIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDED  240 (464)
Q Consensus       162 -~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~  240 (464)
                       .++-+++ ..|... +.....|.|.||.|+.+|..+++..|++.+.. ++..|.+|+||||.|+..|..++++.|++++
T Consensus       178 l~D~~q~l-~~G~~~-d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~-~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~g  254 (527)
T KOG0505|consen  178 LDDARQWL-NAGAEL-DARHARGATALHVAAANGYTEVAALLLQAGYS-VNIKDYDGWTPLHAAAHWGQEDACELLVEHG  254 (527)
T ss_pred             HHHHHHHH-hccccc-cccccccchHHHHHHhhhHHHHHHHHHHhccC-cccccccCCCcccHHHHhhhHhHHHHHHHhh
Confidence             1222333 344443 55555577888888888888888888887777 6777888888888888888888888888887


Q ss_pred             CCccccccCCCCCccccccc
Q 038664          241 DTLAYERDCNGQSPLHLASE  260 (464)
Q Consensus       241 ~~~~~~~~~~g~tpL~~A~~  260 (464)
                      ++.. .....|.+|+-+|..
T Consensus       255 a~~d-~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  255 ADMD-AKTKMGETPLDVADE  273 (527)
T ss_pred             cccc-hhhhcCCCCccchhh
Confidence            7776 466777777777654

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=1.9e-23  Score=178.62  Aligned_cols=156  Identities=24%  Similarity=0.303  Sum_probs=140.6

Q ss_pred             hhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCccccccc-----CCcHHHHHHHHHHCCCccccc-cc
Q 038664          210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASE-----NGKLSLLKRLLHSYPDSIEFL-DK  283 (464)
Q Consensus       210 ~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~-----~g~~~~v~~Ll~~~~~~~~~~-d~  283 (464)
                      +|..|.+|+|+|||++.+++.++|+.||+.|.......+.-|+||+++++.     ....++|..|++.|.-  |.+ ..
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnV--NaKAsQ  338 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDV--NAKASQ  338 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCc--chhhhh
Confidence            678899999999999999999999999999987777889999999999875     3577889999877643  443 56


Q ss_pred             CCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhc
Q 038664          284 KNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQ  363 (464)
Q Consensus       284 ~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~  363 (464)
                      .|+|+|++|+.+|+.++++.|+..   ++++|.+|.+|.|+|+.|+..||.+++++||...+.|+...|.+|-|+|.+|.
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLac---gAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAl  415 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLAC---GADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIAL  415 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHc---cCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHH
Confidence            799999999999999999999988   89999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhhH
Q 038664          364 PSLHQND  370 (464)
Q Consensus       364 ~~~~~~~  370 (464)
                      +.+|.++
T Consensus       416 eagh~eI  422 (452)
T KOG0514|consen  416 EAGHREI  422 (452)
T ss_pred             hcCchHH
Confidence            9998765

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=8.5e-23  Score=174.71  Aligned_cols=165  Identities=27%  Similarity=0.383  Sum_probs=149.8

Q ss_pred             cCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHH-----cCCHHHHHHHhhcCCCccccccCC
Q 038664          176 LDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAA-----LGHFEIACRLSDEDDTLAYERDCN  250 (464)
Q Consensus       176 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~-----~~~~~~v~~Ll~~~~~~~~~~~~~  250 (464)
                      .+..|.+|.|+|||++.+.++++++.||+.+--.++..++-|+||+++++.     ..+.++|..|...|.... .....
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNa-KAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNA-KASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcch-hhhhh
Confidence            377899999999999999999999999999988899999999999999885     346789999998876554 56778


Q ss_pred             CCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHH
Q 038664          251 GQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAI  330 (464)
Q Consensus       251 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~  330 (464)
                      |+|+|++|+.+|+.++|+.||..+++ +|.+|.+|-|+|+.|+++||.+++++|+..+  .+++...|.+|.|+|.+|..
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHGhkEivklLLA~p--~cd~sLtD~DgSTAl~IAle  416 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHGHKEIVKLLLAVP--SCDISLTDVDGSTALSIALE  416 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhChHHHHHHHhccC--cccceeecCCCchhhhhHHh
Confidence            99999999999999999999999999 6999999999999999999999999999887  56788899999999999999


Q ss_pred             cCCchHHHHHHhcc
Q 038664          331 NNHFNIVLILARNM  344 (464)
Q Consensus       331 ~~~~~~v~~Ll~~~  344 (464)
                      .||.+|..+|-.+.
T Consensus       417 agh~eIa~mlYa~~  430 (452)
T KOG0514|consen  417 AGHREIAVMLYAHM  430 (452)
T ss_pred             cCchHHHHHHHHHH
Confidence            99999998887653

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=2.1e-22  Score=181.46  Aligned_cols=226  Identities=16%  Similarity=0.212  Sum_probs=140.9

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHH
Q 038664          119 LHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVV  198 (464)
Q Consensus       119 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  198 (464)
                      +.-|+..+..+-+..|+..++.. +..+.+|.|+||.++...+.+|+++++++++.+ +..+..++||+|.|+..++..+
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~-~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASP-NLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCc-cccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccHHH
Confidence            33444555555555555555442 444555555555555555555555555555554 4555555555555555555555


Q ss_pred             HHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccC-Cc---HHHHHHHHHHC
Q 038664          199 MAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASEN-GK---LSLLKRLLHSY  274 (464)
Q Consensus       199 ~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~-g~---~~~v~~Ll~~~  274 (464)
                      +++++..++. +-..+.+|..|+..+...-..++...-.....          .+ + -|++. ..   ..=++..+..|
T Consensus       122 ~~~li~~gA~-~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~g----------i~-i-ea~R~~~e~~ml~D~~q~l~~G  188 (527)
T KOG0505|consen  122 VEYLIQHGAN-LLAVNSDGNMPYDLAEDEATLDVLETEMARQG----------ID-I-EAARKAEEQTMLDDARQWLNAG  188 (527)
T ss_pred             HHHHHHhhhh-hhhccCCCCCccccccCcchhHHHHHHHHHhc----------cc-H-HHHhhhhHHHHHHHHHHHHhcc
Confidence            5555555554 33444445555444443333333222221111          01 0 01110 01   11122333455


Q ss_pred             CCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhcccccccccccc
Q 038664          275 PDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEK  354 (464)
Q Consensus       275 ~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~  354 (464)
                      .. ....+..|.|.||.|+.+|..++.++|++.   +..++.+|.+|+||||.|+..|+.+++++|+++ |++++.++..
T Consensus       189 ~~-~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~a---g~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~-ga~~d~~t~~  263 (527)
T KOG0505|consen  189 AE-LDARHARGATALHVAAANGYTEVAALLLQA---GYSVNIKDYDGWTPLHAAAHWGQEDACELLVEH-GADMDAKTKM  263 (527)
T ss_pred             cc-ccccccccchHHHHHHhhhHHHHHHHHHHh---ccCcccccccCCCcccHHHHhhhHhHHHHHHHh-hcccchhhhc
Confidence            55 366777799999999999999999999998   788999999999999999999999999999876 9999999999


Q ss_pred             CCChHHhhcc
Q 038664          355 KQTALAIVQP  364 (464)
Q Consensus       355 g~t~l~~a~~  364 (464)
                      |+||++++.+
T Consensus       264 g~~p~dv~de  273 (527)
T KOG0505|consen  264 GETPLDVADE  273 (527)
T ss_pred             CCCCccchhh
Confidence            9999999985

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=9.2e-22  Score=161.56  Aligned_cols=142  Identities=17%  Similarity=0.221  Sum_probs=120.9

Q ss_pred             hhhhcCCCCcHHHHHHHcCCH----HHHHHHhhcCCCccccccCCCCCcccccccCCcHHH---HHHHHHHCCCcccccc
Q 038664          210 INVLDKRDRNPLHYAAALGHF----EIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSL---LKRLLHSYPDSIEFLD  282 (464)
Q Consensus       210 ~~~~~~~g~t~L~~a~~~~~~----~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~---v~~Ll~~~~~~~~~~d  282 (464)
                      ++..+.++.+++|.|++.|+.    +++++|.+.+...+ .+|..|+||||+|+..|+.+.   +++|++.+++ ++.++
T Consensus        13 ~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~-~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad-in~~d   90 (166)
T PHA02743         13 AVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLH-RYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD-INARE   90 (166)
T ss_pred             HhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhh-ccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC-CCCCC
Confidence            556677888899999999987    56667777777665 578889999999999887654   7899999888 58887


Q ss_pred             -cCCCchhHHHHhcCchHHHHHHhc-CcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCC
Q 038664          283 -KKNRNILHLAAQNGHANVVVFISK-LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQT  357 (464)
Q Consensus       283 -~~g~t~L~~A~~~~~~~~~~~L~~-~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t  357 (464)
                       ..|+||||+|+.+++.+++++|+. .   +.+++.+|..|.||||+|+..++.+++++|++. |++++.++..|..
T Consensus        91 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~---gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~  163 (166)
T PHA02743         91 LGTGNTLLHIAASTKNYELAEWLCRQL---GVNLGAINYQHETAYHIAYKMRDRRMMEILRAN-GAVCDDPLSIGLS  163 (166)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhcc---CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcccCCcc
Confidence             589999999999999999999984 4   678889999999999999999999999999975 9999999988754

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.86  E-value=5.7e-21  Score=146.35  Aligned_cols=147  Identities=21%  Similarity=0.223  Sum_probs=101.9

Q ss_pred             cccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHh
Q 038664            3 TVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARA   82 (464)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~   82 (464)
                      .+..-+.+|+..|.+..|+.+|++.+.-+|.+|.+|.||||.|+++|+.++|+.|+..|++ .+.+...|+||||-||..
T Consensus        62 dp~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLhSAckW  140 (228)
T KOG0512|consen   62 DPIRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLHSACKW  140 (228)
T ss_pred             CHHHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchhhhhcc
Confidence            4455677777777777777777777766777777777777777777777777777777777 677777777777777777


Q ss_pred             CCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHH-HHHHHHhCCccccccccCCCcHHHHHHHcC
Q 038664           83 GNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKM-AFTMIRKDPELICYINKAGQSPLSLAIDAG  160 (464)
Q Consensus        83 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~-~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g  160 (464)
                      ++.+++..||++|++.          +.......||||.|+...+... +++|+....--....+..+.+|+.+|-+.+
T Consensus       141 nN~~va~~LLqhgaDV----------nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  141 NNFEVAGRLLQHGADV----------NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             cchhHHHHHHhccCcc----------cccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            7777777777777773          3566666777777776655433 344443322223445566677777766554

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=5.5e-21  Score=146.42  Aligned_cols=143  Identities=26%  Similarity=0.258  Sum_probs=106.6

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchH
Q 038664          220 PLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHAN  299 (464)
Q Consensus       220 ~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~  299 (464)
                      .+.+|+..+....|+.|++..+...+.+|.+|+||||-|+.+|+.++++.|+..|++. +.+...|+||||-||+.++.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccchh
Confidence            3556666666666777776666666667777777777777777777777777777774 777777777777777777777


Q ss_pred             HHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCC-chHHHHHHhccccccccccccCCChHHhhccCc
Q 038664          300 VVVFISKLPEIEDMINSSDLEGNTPLHLAAINNH-FNIVLILARNMRVNIRATNEKKQTALAIVQPSL  366 (464)
Q Consensus       300 ~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~  366 (464)
                      ++.+|++.   |+++|+......||||+|+...+ ...+.+|+...++++..+|+.+.||+++|.+.+
T Consensus       145 va~~LLqh---gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  145 VAGRLLQH---GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             HHHHHHhc---cCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            77777776   67777777777788888877654 456778887788899999999999999998653

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.84  E-value=2.8e-20  Score=152.82  Aligned_cols=142  Identities=15%  Similarity=0.105  Sum_probs=112.2

Q ss_pred             CCcccccCCCCchhHHHHhcCCH----HHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHH---HHHHhcccCCCCCC
Q 038664           29 NGILDMSQNRDTALHIAARFGHK----NVVMEILELRPDLVSVENHKSETPMHVAARAGNFGV---AKIFMRPHGNGNNT  101 (464)
Q Consensus        29 ~~~~~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~---v~~Ll~~~~~~~~~  101 (464)
                      .+++..+.++.++||.||..|+.    +++++|++.++. ++.+|..|+||||+|+..|+.+.   +++|++.+++.+  
T Consensus        11 ~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~-~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin--   87 (166)
T PHA02743         11 LGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL-LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADIN--   87 (166)
T ss_pred             hHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh-hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCC--
Confidence            34555677788899999999997    555566777776 67788899999999999887654   789998888743  


Q ss_pred             cchHHHHhhcC-CCCCcHHHHHHHcCCHHHHHHHHH-hCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCC
Q 038664          102 GTFDDILRKQD-EEGNTPLHNAVRKCDGKMAFTMIR-KDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHR  179 (464)
Q Consensus       102 ~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~  179 (464)
                              .++ ..|.||||+|+..++.+++++|+. .+.+ ....+..|.||||+|+..++.+++++|++++++. +.+
T Consensus        88 --------~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~  157 (166)
T PHA02743         88 --------ARELGTGNTLLHIAASTKNYELAEWLCRQLGVN-LGAINYQHETAYHIAYKMRDRRMMEILRANGAVC-DDP  157 (166)
T ss_pred             --------CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCc
Confidence                    566 478999999999999999999985 5666 4567888999999999999999999999888776 444


Q ss_pred             CCCC
Q 038664          180 GPND  183 (464)
Q Consensus       180 ~~~~  183 (464)
                      +..|
T Consensus       158 ~~~~  161 (166)
T PHA02743        158 LSIG  161 (166)
T ss_pred             ccCC
Confidence            4433

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=3.9e-20  Score=152.81  Aligned_cols=131  Identities=18%  Similarity=0.262  Sum_probs=108.7

Q ss_pred             cccCCCCchhHHHHhcCCHHHHHHHHHh------CCccccccccCCCCHHHHHHHhCC----HHHHHHHhcccCCCCCCc
Q 038664           33 DMSQNRDTALHIAARFGHKNVVMEILEL------RPDLVSVENHKSETPMHVAARAGN----FGVAKIFMRPHGNGNNTG  102 (464)
Q Consensus        33 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~------~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~~  102 (464)
                      ..+..|.|+||+|+..|+.++++.|+..      +++ ++.+|..|+||||+|+..|+    .+++++|++.+++.    
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~-in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi----   90 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAA-LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI----   90 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhh-hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC----
Confidence            4677899999999999999999988653      344 67888899999999999988    58889999888874    


Q ss_pred             chHHHHhhcCC-CCCcHHHHHHHcCCHHHHHHHHHh-CCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcC
Q 038664          103 TFDDILRKQDE-EGNTPLHNAVRKCDGKMAFTMIRK-DPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSV  175 (464)
Q Consensus       103 ~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~  175 (464)
                            +.++. .|.||||+|+..++.+++++|+.. +.+ .+..|..|.|||++|+..++.++++.|++.+...
T Consensus        91 ------n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~-~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         91 ------NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID-LHFCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             ------CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence                  35664 899999999999999999999974 665 5677888999999999999999999998876543

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=2.1e-20  Score=154.36  Aligned_cols=130  Identities=24%  Similarity=0.340  Sum_probs=87.1

Q ss_pred             hhhhcCCCCcHHHHHHHcCCHHHHHHHhhc------CCCccccccCCCCCcccccccCCc----HHHHHHHHHHCCCccc
Q 038664          210 INVLDKRDRNPLHYAAALGHFEIACRLSDE------DDTLAYERDCNGQSPLHLASENGK----LSLLKRLLHSYPDSIE  279 (464)
Q Consensus       210 ~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~------~~~~~~~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~  279 (464)
                      ++..+..|.||||+|++.|+.++++.|+..      ++..+ .+|..|+||||+|+..|+    .+++++|++.+++ ++
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in-~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-in   91 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALN-ATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-IN   91 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhh-ccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-CC
Confidence            344566777777777777777777776432      23333 456667777777777776    4667777777666 36


Q ss_pred             cccc-CCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhc
Q 038664          280 FLDK-KNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARN  343 (464)
Q Consensus       280 ~~d~-~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  343 (464)
                      .++. .|+||||+|+..++.+++++|+...  +.+++.+|..|.||||+|+..++.+++++|++.
T Consensus        92 ~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~--g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         92 AQEMLEGDTALHLAAHRRDHDLAEWLCCQP--GIDLHFCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             CCCcCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence            6663 6777777777777777777776532  355666777777777777777777777777753

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=5e-20  Score=150.14  Aligned_cols=134  Identities=20%  Similarity=0.218  Sum_probs=107.8

Q ss_pred             hhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCC--C----ccccccCCCCCcccccccCCcH---HHHHHHHHHCCCcccc
Q 038664          210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDD--T----LAYERDCNGQSPLHLASENGKL---SLLKRLLHSYPDSIEF  280 (464)
Q Consensus       210 ~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~--~----~~~~~~~~g~tpL~~A~~~g~~---~~v~~Ll~~~~~~~~~  280 (464)
                      .+..|.+|.||||+|++.|+..  ..+...+.  +    .....|..|+||||+|+..|+.   +++++|++.+++ ++.
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad-in~   86 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD-ING   86 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC-ccc
Confidence            5667888999999999998842  33222211  1    1224678899999999999987   468899999988 588


Q ss_pred             cc-cCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccc
Q 038664          281 LD-KKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIR  349 (464)
Q Consensus       281 ~d-~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~  349 (464)
                      ++ ..|+||||+|+..++.+++++|+...  +.+++.+|..|.||||+|+..++.+++++|+.. |++.+
T Consensus        87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~--g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~-ga~~~  153 (154)
T PHA02736         87 KERVFGNTPLHIAVYTQNYELATWLCNQP--GVNMEILNYAFKTPYYVACERHDAKMMNILRAK-GAQCK  153 (154)
T ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCC--CCCCccccCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCC
Confidence            87 58999999999999999999998632  577899999999999999999999999999965 87765

>PF13962 PGG: Domain of unknown function

Probab=99.81  E-value=3.4e-20  Score=140.49  Aligned_cols=69  Identities=49%  Similarity=0.731  Sum_probs=65.0

Q ss_pred             CCchhhhhHHHHHHHHHHHHHHhhccCCCCCCC----CCCcccccCCc-cchhHHhHhHHHHHHHHHHHHHHhh
Q 038664          393 PKNEDMAQNLLVMATLVATLTFTSAFTIPGGYN----DKGVPIFDTNL-VFKAFVLTDTIAMTTSLTAAVLTFG  461 (464)
Q Consensus       393 ~~~~~~~~~~~~va~liatv~faa~~~~pgg~~----~~g~~~~~~~~-~f~~f~~~~~~a~~~s~~~~~~~~~  461 (464)
                      +|.+++++++++||+|||||||+|++||||||.    +.|+|++.+++ .|++|+++|++||++|+++++++++
T Consensus         2 ~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~   75 (113)
T PF13962_consen    2 KWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLIS   75 (113)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999999999999994    46999999888 9999999999999999999999984

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.81  E-value=6.3e-19  Score=155.65  Aligned_cols=153  Identities=18%  Similarity=0.152  Sum_probs=118.7

Q ss_pred             ccCCCC-chhHHHHhcCCHHHHHHHHHhCCcccccc----ccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHH
Q 038664           34 MSQNRD-TALHIAARFGHKNVVMEILELRPDLVSVE----NHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDIL  108 (464)
Q Consensus        34 ~~~~g~-t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  108 (464)
                      .|..|+ ++||.|+..|+.+++++|+++|++ ++.+    +..|.||||+|+..++.+++++|+++|++.+         
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAd-iN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN---------   97 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGAD-PEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVN---------   97 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCC-ccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcC---------
Confidence            445544 567777778899999999999998 5555    4589999999999999999999999998854         


Q ss_pred             hhc-CCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHH
Q 038664          109 RKQ-DEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLL  187 (464)
Q Consensus       109 ~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l  187 (464)
                       .+ +..|.||||+|+..++.+++++|++.|++ ++..+..|.|||++|+..++.+++..+..      ...+..+.+|.
T Consensus        98 -~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~~~~------~~~~~~~~~~~  169 (300)
T PHA02884         98 -RYAEEAKITPLYISVLHGCLKCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFMICD------NEISNFYKHPK  169 (300)
T ss_pred             -cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHHhcC------CcccccccChh
Confidence             43 45789999999999999999999999988 46778889999999998888877655542      12344556677


Q ss_pred             HHHHHcCCHHHHHHHHHhCc
Q 038664          188 HIAIIKSNFVVMAKILEAKR  207 (464)
Q Consensus       188 ~~a~~~~~~~~~~~ll~~~~  207 (464)
                      +++   ++.++++.|+++..
T Consensus       170 ~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        170 KIL---INFDILKILVSHFI  186 (300)
T ss_pred             hhh---ccHHHHHHHHHHHH
Confidence            654   35777887777664

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.81  E-value=3.7e-19  Score=157.12  Aligned_cols=154  Identities=19%  Similarity=0.168  Sum_probs=116.9

Q ss_pred             CCCCCCC-HHHHHHHcCCHHHHHHHHHhCchhhhhh----cCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCC
Q 038664          179 RGPNDLT-LLHIAIIKSNFVVMAKILEAKRDLINVL----DKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQS  253 (464)
Q Consensus       179 ~~~~~~~-~l~~a~~~~~~~~~~~ll~~~~~~~~~~----~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t  253 (464)
                      ++..+.+ +|+.|+..++.++++.|++.|++ ++..    +..|.||||+|+..++.+++++|+++|++++...+..|.|
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAd-iN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T  106 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGAD-PEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT  106 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCC-ccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence            3344444 55666667778888888888876 5665    4578888898888888888888888888887433557888


Q ss_pred             cccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCC
Q 038664          254 PLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNH  333 (464)
Q Consensus       254 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~  333 (464)
                      |||.|+..|+.+++++|++.|++ ++.+|..|.||||+|++.++.+++..+..        +..+..+.+|++++   ++
T Consensus       107 pLh~Aa~~~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~---~n  174 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFMICD--------NEISNFYKHPKKIL---IN  174 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHHhcC--------CcccccccChhhhh---cc
Confidence            99999888999999999988888 48888889999999988888777655532        22466677888875   36


Q ss_pred             chHHHHHHhcccc
Q 038664          334 FNIVLILARNMRV  346 (464)
Q Consensus       334 ~~~v~~Ll~~~~~  346 (464)
                      .+++++|+++ ++
T Consensus       175 ~ei~~~Lish-~v  186 (300)
T PHA02884        175 FDILKILVSH-FI  186 (300)
T ss_pred             HHHHHHHHHH-HH
Confidence            7888888876 44

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.81  E-value=2.8e-20  Score=154.45  Aligned_cols=150  Identities=27%  Similarity=0.317  Sum_probs=118.5

Q ss_pred             HHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHH
Q 038664          225 AALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI  304 (464)
Q Consensus       225 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L  304 (464)
                      |+.|+.--|+.-++......+.-|..|.+|||+||+.|+..+++.|+..|+. +|..+.-..||||.|+.+|+.++++.|
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHHH
Confidence            3444433344444444433346778899999999999999999999999888 588888888999999999999999998


Q ss_pred             hcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCchhhH--HHhhcCCCC
Q 038664          305 SKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQND--ILEGHGGSA  379 (464)
Q Consensus       305 ~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~--~l~~~g~~~  379 (464)
                      ++.   .+++|+.+..|+||||||+..|.-.+++-|+.. |+-++..|++|.||++.|...-...+  +-+++|-.+
T Consensus        87 l~~---kadvnavnehgntplhyacfwgydqiaedli~~-ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~  159 (448)
T KOG0195|consen   87 LSR---KADVNAVNEHGNTPLHYACFWGYDQIAEDLISC-GAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSP  159 (448)
T ss_pred             HHH---hcccchhhccCCCchhhhhhhcHHHHHHHHHhc-cceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCC
Confidence            887   788999999999999999999999999999965 99999999999999999985433322  344455443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.79  E-value=5e-19  Score=144.26  Aligned_cols=130  Identities=18%  Similarity=0.142  Sum_probs=97.3

Q ss_pred             cccCCCCchhHHHHhcCCHHHHHHHHHhC------CccccccccCCCCHHHHHHHhCCH---HHHHHHhcccCCCCCCcc
Q 038664           33 DMSQNRDTALHIAARFGHKNVVMEILELR------PDLVSVENHKSETPMHVAARAGNF---GVAKIFMRPHGNGNNTGT  103 (464)
Q Consensus        33 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~------~~~~~~~~~~g~t~L~~A~~~g~~---~~v~~Ll~~~~~~~~~~~  103 (464)
                      ..+.+|.||||+||..|+..  +.+...+      ..++..+|..|.||||+|+..|+.   +++++|++.+++.     
T Consensus        12 ~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-----   84 (154)
T PHA02736         12 EPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-----   84 (154)
T ss_pred             hcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-----
Confidence            56778899999999998842  2222221      112345678889999999988876   4678888888773     


Q ss_pred             hHHHHhhcC-CCCCcHHHHHHHcCCHHHHHHHHHh-CCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcC
Q 038664          104 FDDILRKQD-EEGNTPLHNAVRKCDGKMAFTMIRK-DPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSV  175 (464)
Q Consensus       104 ~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~  175 (464)
                           +.++ ..|+||||+|+..++.+++++|+.. +.+ .+..+..|.||||+|+..|+.+++++|++.+++.
T Consensus        85 -----n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d-~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         85 -----NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN-MEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             -----cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                 3566 4788999999888888888888875 555 4677888888888888888888888888877653

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.78  E-value=1.9e-19  Score=149.57  Aligned_cols=138  Identities=28%  Similarity=0.337  Sum_probs=126.7

Q ss_pred             HHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHH
Q 038664            8 LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGV   87 (464)
Q Consensus         8 L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~   87 (464)
                      ++--|++|+.-.++-.|.....+.|..|..|.+|||+||+.|+..+|+.|+.+|+. ++..+....||||+|+.+||-++
T Consensus         4 if~wcregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdi   82 (448)
T KOG0195|consen    4 IFGWCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDI   82 (448)
T ss_pred             hhhhhhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHH
Confidence            45568899988888888888888999999999999999999999999999999999 78888889999999999999999


Q ss_pred             HHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHH
Q 038664           88 AKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAI  157 (464)
Q Consensus        88 v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~  157 (464)
                      |+.|++..++          ++..+..|+|||||||..|...+++-|+..|+. ++..+++|.||+..|-
T Consensus        83 vqkll~~kad----------vnavnehgntplhyacfwgydqiaedli~~ga~-v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   83 VQKLLSRKAD----------VNAVNEHGNTPLHYACFWGYDQIAEDLISCGAA-VNICNKKGMTPLDKAK  141 (448)
T ss_pred             HHHHHHHhcc----------cchhhccCCCchhhhhhhcHHHHHHHHHhccce-eeecccCCCCchhhhc
Confidence            9999998888          558899999999999999999999999999998 5788999999998763

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.74  E-value=1.7e-17  Score=157.60  Aligned_cols=194  Identities=21%  Similarity=0.208  Sum_probs=159.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcC--------cCcCCCCCCCCCHHHHHHHc---CCHHHHHHHHHhCchhhhhh---
Q 038664          148 AGQSPLSLAIDAGLTHIACCIIKEKL--------SVLDHRGPNDLTLLHIAIIK---SNFVVMAKILEAKRDLINVL---  213 (464)
Q Consensus       148 ~g~t~l~~A~~~g~~~~~~~Ll~~~~--------~~~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~---  213 (464)
                      ..+.++..+...+..+....+.+...        ...+.++..|.|.||.|..+   ++.++++.|++..|..++..   
T Consensus       100 ~d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~  179 (782)
T KOG3676|consen  100 FDRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTS  179 (782)
T ss_pred             cchhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhh
Confidence            33466667777776666666655441        12366788899999999874   45588999999888766643   


Q ss_pred             -cCCCCcHHHHHHHcCCHHHHHHHhhcCCCcccc--------cc--------------CCCCCcccccccCCcHHHHHHH
Q 038664          214 -DKRDRNPLHYAAALGHFEIACRLSDEDDTLAYE--------RD--------------CNGQSPLHLASENGKLSLLKRL  270 (464)
Q Consensus       214 -~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~--------~~--------------~~g~tpL~~A~~~g~~~~v~~L  270 (464)
                       ...|.||||.|+.+.+.++|++|++.|++++..        .|              ..|..||.+||..++.+++++|
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL  259 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL  259 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence             457999999999999999999999999987641        11              1467899999999999999999


Q ss_pred             HHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhc
Q 038664          271 LHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARN  343 (464)
Q Consensus       271 l~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  343 (464)
                      +++++++ +.+|..|+|.||..+.+-..++.+++++.+.. .....+|..|-|||.+|++.|+.++.+.+++.
T Consensus       260 l~~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~-~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  260 LAHGADP-NAQDSNGNTVLHMLVIHFVTEMYDLALELGAN-ALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HhcCCCC-CccccCCChHHHHHHHHHHHHHHHHHHhcCCC-ccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999995 99999999999999999999999999999654 44778899999999999999999999999976

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.73  E-value=2.8e-17  Score=156.16  Aligned_cols=197  Identities=16%  Similarity=0.178  Sum_probs=161.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhc--------CCCcccccCCCCchhHHHHhc---CCHHHHHHHHHhCCccccc----ccc
Q 038664            6 RVLFRALRRGDAATVRESARLN--------GNGILDMSQNRDTALHIAARF---GHKNVVMEILELRPDLVSV----ENH   70 (464)
Q Consensus         6 ~~L~~A~~~g~~~~~~~ll~~~--------~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~----~~~   70 (464)
                      +.++.|..+++.+.+..+++..        -.+++.+...|.|.||.|..+   ++.++++.|++..|.+++.    ...
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            6778888899998888877654        245667788899999999974   4568999999998876653    346


Q ss_pred             CCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhc--------------CCCCCcHHHHHHHcCCHHHHHHHHH
Q 038664           71 KSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQ--------------DEEGNTPLHNAVRKCDGKMAFTMIR  136 (464)
Q Consensus        71 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~--------------~~~g~t~L~~A~~~~~~~~~~~Ll~  136 (464)
                      .|.||||.|+.+.+.++|++|++.|++...... ...+...              -..|+.||..|+..++.|++++|++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~-G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARAC-GAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhh-ccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            799999999999999999999999998652211 1111111              1247889999999999999999999


Q ss_pred             hCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCc--CcCCCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 038664          137 KDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLS--VLDHRGPNDLTLLHIAIIKSNFVVMAKILEA  205 (464)
Q Consensus       137 ~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~--~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  205 (464)
                      ++++ ++.+|..|+|.||..+..-..++...+++.++.  . ...+..|.|||..|++-|+.++.+.+++.
T Consensus       262 ~gAd-~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~-~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  262 HGAD-PNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALE-HVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cCCC-CCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccc-cccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9988 578899999999999999888999999998888  4 67888899999999999999999999988

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.71  E-value=3e-17  Score=120.27  Aligned_cols=89  Identities=38%  Similarity=0.555  Sum_probs=73.2

Q ss_pred             ccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCc
Q 038664          255 LHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHF  334 (464)
Q Consensus       255 L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~  334 (464)
                      ||+|++.|+.+++++|++.+.+. +.    |+||||+|+.+|+.+++++|++.   +.+++.+|..|+||||+|+..|+.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLEN---GADINSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHHT---TTCTT-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHHh---cccccccCCCCCCHHHHHHHcCCH
Confidence            57888888888888888877653 33    88899999999999999999887   678888888999999999999999


Q ss_pred             hHHHHHHhcccccccccc
Q 038664          335 NIVLILARNMRVNIRATN  352 (464)
Q Consensus       335 ~~v~~Ll~~~~~d~~~~n  352 (464)
                      +++++|+++ |++++.+|
T Consensus        73 ~~~~~Ll~~-g~~~~~~n   89 (89)
T PF12796_consen   73 EIVKLLLEH-GADVNIRN   89 (89)
T ss_dssp             HHHHHHHHT-TT-TTSS-
T ss_pred             HHHHHHHHc-CCCCCCcC
Confidence            999999976 88888776

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.68  E-value=2.9e-16  Score=115.02  Aligned_cols=86  Identities=27%  Similarity=0.365  Sum_probs=76.9

Q ss_pred             HHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHH
Q 038664            8 LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGV   87 (464)
Q Consensus         8 L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~   87 (464)
                      ||.||+.|+.+.++.+++.+ .+++.    |+||||+|+..|+.+++++|++.|++ ++.++..|+||||+|+..|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~-~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKG-ADINL----GNTALHYAAENGNLEIVKLLLENGAD-INSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTT-STTTS----SSBHHHHHHHTTTHHHHHHHHHTTTC-TT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCc-CCCCC----CCCHHHHHHHcCCHHHHHHHHHhccc-ccccCCCCCCHHHHHHHcCCHHH
Confidence            78999999999999999844 35554    88999999999999999999999998 78899999999999999999999


Q ss_pred             HHHHhcccCCCC
Q 038664           88 AKIFMRPHGNGN   99 (464)
Q Consensus        88 v~~Ll~~~~~~~   99 (464)
                      +++|+++|++.+
T Consensus        75 ~~~Ll~~g~~~~   86 (89)
T PF12796_consen   75 VKLLLEHGADVN   86 (89)
T ss_dssp             HHHHHHTTT-TT
T ss_pred             HHHHHHcCCCCC
Confidence            999999988754

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.68  E-value=3.5e-16  Score=106.78  Aligned_cols=103  Identities=15%  Similarity=0.294  Sum_probs=89.6

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCC
Q 038664            5 ARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGN   84 (464)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~   84 (464)
                      |..+.+++++|+.+.+++.+..+ .+++.. ..|++|||+|+.+|+.+++++|+..|++ ++.+|..|-|||..|+..||
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g-~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEG-LNVNEI-YGGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHcc-ccHHHH-hCCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHHHHHHHhh
Confidence            56788999999999999999876 466633 3899999999999999999999999999 88899999999999999999


Q ss_pred             HHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHH
Q 038664           85 FGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLH  120 (464)
Q Consensus        85 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~  120 (464)
                      .++|++|++.|++..          .+..+|.+.+.
T Consensus        80 ~~cVklLL~~GAdrt----------~~~PdG~~~~e  105 (117)
T KOG4214|consen   80 RDCVKLLLQNGADRT----------IHAPDGTALIE  105 (117)
T ss_pred             HHHHHHHHHcCcccc----------eeCCCchhHHh
Confidence            999999999999865          45555655544

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.68  E-value=1.1e-15  Score=120.35  Aligned_cols=124  Identities=29%  Similarity=0.527  Sum_probs=100.4

Q ss_pred             ccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCC
Q 038664           34 MSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDE  113 (464)
Q Consensus        34 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  113 (464)
                      .+..|.||||+|+..|+.+++++|++.+++ .+..+..|.||||+|+..++.+++++|++.+..          ++..+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~-~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~----------~~~~~~   71 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD----------VNARDK   71 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----------ccccCC
Confidence            456788999999999999999999988887 466788888999999999999999999988764          335667


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHH
Q 038664          114 EGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCII  169 (464)
Q Consensus       114 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll  169 (464)
                      .+.||+|+|+..++.+++++|++.+.. ....+..+.+|++.|...++.+++++|+
T Consensus        72 ~~~~~l~~a~~~~~~~~~~~L~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          72 DGNTPLHLAARNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            788888888888888888888888755 3455677888888888888888877763

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.67  E-value=5.3e-16  Score=122.18  Aligned_cols=124  Identities=41%  Similarity=0.647  Sum_probs=93.8

Q ss_pred             hcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHH
Q 038664          213 LDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLA  292 (464)
Q Consensus       213 ~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A  292 (464)
                      .+.+|.||||+|+..++.+++++|++.+.... ..+..|.+|+|.|+..++.+++++|++.++. ++..+..|.||+|+|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~-~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~a   80 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNTPLHLA   80 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHH
Confidence            34667788888888888888888887777654 4667777888888888888888888877765 466677778888888


Q ss_pred             HhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHH
Q 038664          293 AQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILA  341 (464)
Q Consensus       293 ~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  341 (464)
                      ++.++.+++++|++.   +..++..|..|.||+++|...++.+++++|+
T Consensus        81 ~~~~~~~~~~~L~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          81 ARNGNLDVVKLLLKH---GADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHcCcHHHHHHHHHc---CCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            888888888888776   3556667777888888888888887777764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.61  E-value=1.6e-15  Score=103.57  Aligned_cols=104  Identities=20%  Similarity=0.281  Sum_probs=93.1

Q ss_pred             cccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCC
Q 038664          254 PLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNH  333 (464)
Q Consensus       254 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~  333 (464)
                      -+.+++++|..+-|+.....+-+ ++..- .|++|||+|+.+|+.++++||+..   |++++.+|+.|-|||-.|++.||
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~n-Vn~~~-ggR~plhyAAD~GQl~ilefli~i---GA~i~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLN-VNEIY-GGRTPLHYAADYGQLSILEFLISI---GANIQDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHcccc-HHHHh-CCcccchHhhhcchHHHHHHHHHh---ccccCCccccCCcHHHHHHHHhh
Confidence            35688899999999999988854 45433 799999999999999999999998   89999999999999999999999


Q ss_pred             chHHHHHHhccccccccccccCCChHHhhc
Q 038664          334 FNIVLILARNMRVNIRATNEKKQTALAIVQ  363 (464)
Q Consensus       334 ~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~  363 (464)
                      .++|++||++ |+|...+-.+|.+.++.+.
T Consensus        80 ~~cVklLL~~-GAdrt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   80 RDCVKLLLQN-GADRTIHAPDGTALIEATE  108 (117)
T ss_pred             HHHHHHHHHc-CcccceeCCCchhHHhhcc
Confidence            9999999976 9999999999999888766

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.55  E-value=4.1e-14  Score=118.00  Aligned_cols=122  Identities=18%  Similarity=0.145  Sum_probs=110.7

Q ss_pred             ccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC
Q 038664            4 VARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG   83 (464)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g   83 (464)
                      -.++|+.++-.||.+.+..||+.-- .++.+|+.|.|+|..|+..|+.++|+.|++.|+|+.......++||||+|+.+|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr-~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVR-QVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhh-hhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            3578999999999999999998643 688999999999999999999999999999999987778889999999999999


Q ss_pred             CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHH
Q 038664           84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIR  136 (464)
Q Consensus        84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  136 (464)
                      +.++.++|++.|+...          ..|.-|+|+-..|+.-|+.++|..+-.
T Consensus        91 n~dvcrllldaGa~~~----------~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   91 NQDVCRLLLDAGARMY----------LVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             CchHHHHHHhccCccc----------cccchhhhHHHHHHHhcchHHHHHHhc
Confidence            9999999999998854          678889999999999999998876543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.52  E-value=1.9e-13  Score=120.12  Aligned_cols=128  Identities=33%  Similarity=0.412  Sum_probs=85.7

Q ss_pred             hhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCc-----HHHHHHHHHHCC--CcccccccC
Q 038664          212 VLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGK-----LSLLKRLLHSYP--DSIEFLDKK  284 (464)
Q Consensus       212 ~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-----~~~v~~Ll~~~~--~~~~~~d~~  284 (464)
                      ..+..+.++++.++..+..+++++++..+.++. .++..|.||||+|+..++     .++++.|++.++  +..+..|..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVN-AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcc-cccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            334456666666666666666666666666663 566666666666666666     677777777776  444555777


Q ss_pred             CCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhc
Q 038664          285 NRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARN  343 (464)
Q Consensus       285 g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  343 (464)
                      |+||||+|+..|+.+++++|++.   +++++..+..|.|+++.|+..++.++++.++..
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~---~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEA---GADPNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhc---CCCCcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            77777777777777777777666   555666667777777777777777777777653

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.49  E-value=6.9e-14  Score=90.98  Aligned_cols=54  Identities=35%  Similarity=0.594  Sum_probs=45.7

Q ss_pred             CCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHh
Q 038664           38 RDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFM   92 (464)
Q Consensus        38 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll   92 (464)
                      |+||||+||..|+.+++++|++++.+ ++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            68999999999999999999999988 7888999999999999999999999986

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.46  E-value=1.8e-12  Score=113.79  Aligned_cols=129  Identities=28%  Similarity=0.359  Sum_probs=112.7

Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCC-----HHHHHHHhhcCC--CccccccC
Q 038664          177 DHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGH-----FEIACRLSDEDD--TLAYERDC  249 (464)
Q Consensus       177 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~-----~~~v~~Ll~~~~--~~~~~~~~  249 (464)
                      ...+..+.++++.++..+....++.++..+.+ ++..+..|.||||+|+..++     .++++.|++.++  +.....+.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGAD-VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCC-cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            45556678899999999999999888888888 58889999999999999998     899999999999  56656789


Q ss_pred             CCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcC
Q 038664          250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL  307 (464)
Q Consensus       250 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~  307 (464)
                      .|+||||+|+..|+.++++.|++.+++. +.++..|.|++++|+..++.++++.+.+.
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCCC-cccccCCCcchhhhcccchHHHHHHHHhc
Confidence            9999999999999999999999998884 88889999999999999999999888775

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.46  E-value=5.5e-14  Score=91.79  Aligned_cols=50  Identities=34%  Similarity=0.407  Sum_probs=31.2

Q ss_pred             hhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhh
Q 038664          312 DMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIV  362 (464)
Q Consensus       312 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a  362 (464)
                      .+++.+|..|+||||+|++.|+.+++++|+ ..|+|++.+|++|+||+++|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll-~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLL-QNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHH-HCT--TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHH-HCcCCCCCCcCCCCCHHHhC
Confidence            678899999999999999999999999999 45999999999999999986

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=6.5e-13  Score=119.91  Aligned_cols=119  Identities=21%  Similarity=0.250  Sum_probs=98.2

Q ss_pred             hhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHH
Q 038664           41 ALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLH  120 (464)
Q Consensus        41 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~  120 (464)
                      .|.-|+..|.+++|+.++..-.| +...|..|.|+||-|+..||.+||++|++.|++          ++..|.+|+||||
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~D-pSqpNdEGITaLHNAiCaghyeIVkFLi~~gan----------VNa~DSdGWTPLH  621 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTD-PSQPNDEGITALHNAICAGHYEIVKFLIEFGAN----------VNAADSDGWTPLH  621 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcC-CCCCCccchhHHhhhhhcchhHHHHHHHhcCCc----------ccCccCCCCchhh
Confidence            45668889999999999887766 777889999999999999999999999999988          4588999999999


Q ss_pred             HHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHH--HHcCCHHHHHHHHH
Q 038664          121 NAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLA--IDAGLTHIACCIIK  170 (464)
Q Consensus       121 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A--~~~g~~~~~~~Ll~  170 (464)
                      +|+..++..+++.|++.|+.+....-.++.|+..-+  .+.|..++.++|..
T Consensus       622 CAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  622 CAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            999999999999999999987766667777776554  24566666666654

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.41  E-value=1e-12  Score=109.79  Aligned_cols=123  Identities=21%  Similarity=0.208  Sum_probs=111.9

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCC
Q 038664          183 DLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENG  262 (464)
Q Consensus       183 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  262 (464)
                      ...+|.-++-.++.+....|++.... ++.+|..|.++|..|+.+|+.++++.|++.|++++...+..++||||+|+.+|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~-vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQ-VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhh-hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            35688888888999999999988655 89999999999999999999999999999999999888889999999999999


Q ss_pred             cHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcC
Q 038664          263 KLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL  307 (464)
Q Consensus       263 ~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~  307 (464)
                      +.++.+.|++.|+.. ...+.-|+|+-.+|+.-|+.++|..+-.+
T Consensus        91 n~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   91 NQDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CchHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            999999999999985 88899999999999999999999888665

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.40  E-value=5.4e-13  Score=86.76  Aligned_cols=54  Identities=39%  Similarity=0.561  Sum_probs=36.8

Q ss_pred             CCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHH
Q 038664          285 NRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILA  341 (464)
Q Consensus       285 g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  341 (464)
                      |+||||+|++.|+.+++++|++.   +.++|.+|.+|+||||+|++.|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~---~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH---GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT---TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            56778888888888888877766   5667777777888888888888888877775

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.40  E-value=3.1e-13  Score=88.22  Aligned_cols=56  Identities=29%  Similarity=0.426  Sum_probs=33.4

Q ss_pred             HHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHH
Q 038664           23 SARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVA   79 (464)
Q Consensus        23 ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A   79 (464)
                      ||+.++.+++..|..|+||||+||.+|+.++|++|++.+++ ++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d-~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD-PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC-CCCCcCCCCCHHHhC
Confidence            35555568889999999999999999999999999988888 899999999999997

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=1.3e-12  Score=117.95  Aligned_cols=119  Identities=18%  Similarity=0.249  Sum_probs=106.6

Q ss_pred             HHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHH
Q 038664          187 LHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSL  266 (464)
Q Consensus       187 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  266 (464)
                      |.-|+..|.+++++.++..-.+ +...+.+|.|+||.|+..||++||++|++.|++.+ ..|++||||||+|+..+++.+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~D-pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVN-a~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTD-PSQPNDEGITALHNAICAGHYEIVKFLIEFGANVN-AADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcC-CCCCCccchhHHhhhhhcchhHHHHHHHhcCCccc-CccCCCCchhhhhhhcCchHH
Confidence            4567889999999999988877 78889999999999999999999999999999998 699999999999999999999


Q ss_pred             HHHHHHHCCCcccccccCCCchhHHHHh--cCchHHHHHHhcC
Q 038664          267 LKRLLHSYPDSIEFLDKKNRNILHLAAQ--NGHANVVVFISKL  307 (464)
Q Consensus       267 v~~Ll~~~~~~~~~~d~~g~t~L~~A~~--~~~~~~~~~L~~~  307 (464)
                      ++.|++.|+..+-.+-.++.|+...+-.  .|...|.+||...
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            9999999999777777889999887754  5788899998655

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.36  E-value=1.3e-12  Score=130.72  Aligned_cols=86  Identities=34%  Similarity=0.427  Sum_probs=44.5

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchH
Q 038664          220 PLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHAN  299 (464)
Q Consensus       220 ~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~  299 (464)
                      .|+.|+..|+.+.++.|++.|++++ .+|..|.||||+|+..|+.+++++|+++|++ ++..|..|.||||+|+.+++.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin-~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad-vn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPN-CRDYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHH
Confidence            3445555555555555555555444 3444555555555555555555555555544 2455555555555555555555


Q ss_pred             HHHHHhcC
Q 038664          300 VVVFISKL  307 (464)
Q Consensus       300 ~~~~L~~~  307 (464)
                      ++++|++.
T Consensus       163 iv~~Ll~~  170 (664)
T PTZ00322        163 VVQLLSRH  170 (664)
T ss_pred             HHHHHHhC
Confidence            55555444

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.35  E-value=6.8e-12  Score=125.54  Aligned_cols=103  Identities=19%  Similarity=0.212  Sum_probs=86.5

Q ss_pred             hhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHH
Q 038664           41 ALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLH  120 (464)
Q Consensus        41 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~  120 (464)
                      .|+.|+..|+.+.++.|++.|++ ++.+|..|.||||+|+..|+.+++++|++.|++.          +.+|..|.||||
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gad-in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv----------n~~d~~G~TpLh  153 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGAD-PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP----------TLLDKDGKTPLE  153 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC----------CCCCCCCCCHHH
Confidence            48889999999999999999988 7888999999999999999999999999998884          478889999999


Q ss_pred             HHHHcCCHHHHHHHHHh-------CCccccccccCCCcHHHH
Q 038664          121 NAVRKCDGKMAFTMIRK-------DPELICYINKAGQSPLSL  155 (464)
Q Consensus       121 ~A~~~~~~~~~~~Ll~~-------~~~~~~~~~~~g~t~l~~  155 (464)
                      +|+..++.+++++|+++       +++ ....+..|.+|+..
T Consensus       154 ~A~~~g~~~iv~~Ll~~~~~~~~~ga~-~~~~~~~g~~~~~~  194 (664)
T PTZ00322        154 LAEENGFREVVQLLSRHSQCHFELGAN-AKPDSFTGKPPSLE  194 (664)
T ss_pred             HHHHCCcHHHHHHHHhCCCcccccCCC-CCccccCCCCccch
Confidence            99999999999999988       544 33445556665543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.16  E-value=1.4e-10  Score=106.00  Aligned_cols=124  Identities=27%  Similarity=0.405  Sum_probs=111.5

Q ss_pred             cccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCc-cccccccCCCCHHHHHHH
Q 038664            3 TVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPD-LVSVENHKSETPMHVAAR   81 (464)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~g~t~L~~A~~   81 (464)
                      ..+..+..|+..+|+-.+++....+| ++...+++..|.||+|+..|+-++|+|+|++++. +++..+..|.|+||.|+.
T Consensus       865 piseeil~av~~~D~~klqE~h~~gg-~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~  943 (1004)
T KOG0782|consen  865 PISEEILRAVLSSDLMKLQETHLNGG-SLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAAC  943 (1004)
T ss_pred             CccHHHHHHHHhccHHHHHHHHhcCC-ceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHH
Confidence            46778999999999999988887776 7778899999999999999999999999999874 567889999999999999


Q ss_pred             hCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 038664           82 AGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRK  137 (464)
Q Consensus        82 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  137 (464)
                      .++-.+.++|++.|+.          +...|..|.||-.-|-+.|+.+++.+|-..
T Consensus       944 ~~~r~vc~~lvdagas----------l~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  944 QRNRAVCQLLVDAGAS----------LRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hcchHHHHHHHhcchh----------heecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999987          567899999999999999999998888654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.88  E-value=1.9e-09  Score=96.60  Aligned_cols=88  Identities=24%  Similarity=0.225  Sum_probs=81.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHH
Q 038664            7 VLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFG   86 (464)
Q Consensus         7 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~   86 (464)
                      .++.|++.||+..+++++-++. ++++.|.+.+|+||+||..|+.+++|+|++.....++.+|..|+|||.-|...+|.+
T Consensus       509 ~~~~aa~~GD~~alrRf~l~g~-D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~  587 (622)
T KOG0506|consen  509 NVMYAAKNGDLSALRRFALQGM-DLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKE  587 (622)
T ss_pred             hhhhhhhcCCHHHHHHHHHhcc-cccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHH
Confidence            6789999999999999987665 999999999999999999999999999999987778999999999999999999999


Q ss_pred             HHHHHhccc
Q 038664           87 VAKIFMRPH   95 (464)
Q Consensus        87 ~v~~Ll~~~   95 (464)
                      ++++|-+..
T Consensus       588 v~k~L~~~~  596 (622)
T KOG0506|consen  588 VVKLLEEAQ  596 (622)
T ss_pred             HHHHHHHHh
Confidence            999998753

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.83  E-value=1.8e-09  Score=103.30  Aligned_cols=92  Identities=16%  Similarity=0.206  Sum_probs=73.5

Q ss_pred             HHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCC-CCCcHHHHHHHcCCchHHHHHHhccccc
Q 038664          269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL-EGNTPLHLAAINNHFNIVLILARNMRVN  347 (464)
Q Consensus       269 ~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d  347 (464)
                      ++-+.+.+..++.|..|+|+||+++..+..+++++|+++   |.+++.+|. .|.||||-|..+|+.+++..||++ |+.
T Consensus        36 F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqh---Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~-g~S  111 (1267)
T KOG0783|consen   36 FSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQH---GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSK-GRS  111 (1267)
T ss_pred             HHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhc---CceeeeccccccchHhhHhhhhchHHHHHHHHhc-CCc
Confidence            444555666678888888888888888888888888887   677787775 488888888888888888888865 888


Q ss_pred             cccccccCCChHHhhcc
Q 038664          348 IRATNEKKQTALAIVQP  364 (464)
Q Consensus       348 ~~~~n~~g~t~l~~a~~  364 (464)
                      ..++|++|..|++...+
T Consensus       112 L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  112 LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             eEEecccCCCHHHHHhh
Confidence            88888888888888774

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.81  E-value=2.6e-08  Score=91.49  Aligned_cols=120  Identities=19%  Similarity=0.224  Sum_probs=103.6

Q ss_pred             hHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHH
Q 038664           42 LHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN  121 (464)
Q Consensus        42 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  121 (464)
                      +..|+..+++--++.....|.+ +-.++.+..|.||+|+..|+-++|+|+++++..        +++.+.+..|.|+||.
T Consensus       870 il~av~~~D~~klqE~h~~gg~-ll~~~~~~~sllh~a~~tg~~eivkyildh~p~--------elld~~de~get~lhk  940 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGS-LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS--------ELLDMADETGETALHK  940 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCc-eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH--------HHHHHHhhhhhHHHHH
Confidence            4566777776666667777877 556888899999999999999999999999854        4688899999999999


Q ss_pred             HHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 038664          122 AVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKE  171 (464)
Q Consensus       122 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~  171 (464)
                      |+..++-.+..+|++.|+.+ ...|..|.||-..|-+.|..++..+|-..
T Consensus       941 aa~~~~r~vc~~lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  941 AACQRNRAVCQLLVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHhcchHHHHHHHhcchhh-eecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            99999999999999999984 57789999999999999999999888654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.80  E-value=5.8e-09  Score=57.59  Aligned_cols=30  Identities=47%  Similarity=0.687  Sum_probs=26.5

Q ss_pred             CCCcHHHHHHHcCCchHHHHHHhcccccccc
Q 038664          320 EGNTPLHLAAINNHFNIVLILARNMRVNIRA  350 (464)
Q Consensus       320 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~  350 (464)
                      +|+||||+|++.|+.+++++|+++ |+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~-gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEH-GADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHc-CCCCCC
Confidence            489999999999999999999976 888873

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.79  E-value=6.2e-09  Score=59.47  Aligned_cols=33  Identities=42%  Similarity=0.676  Sum_probs=29.6

Q ss_pred             CCCcHHHHHHHcCCchHHHHHHhccccccccccc
Q 038664          320 EGNTPLHLAAINNHFNIVLILARNMRVNIRATNE  353 (464)
Q Consensus       320 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~  353 (464)
                      +|+||||+|++.|+.+++++|+++ |++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKH-GADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHT-TSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHC-cCCCCCCCC
Confidence            489999999999999999999975 999998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.74  E-value=1.1e-08  Score=98.05  Aligned_cols=100  Identities=22%  Similarity=0.268  Sum_probs=84.5

Q ss_pred             CCHHHHHHHHhhcCCC-cccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhc
Q 038664           15 GDAATVRESARLNGNG-ILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMR   93 (464)
Q Consensus        15 g~~~~~~~ll~~~~~~-~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~   93 (464)
                      +....++.++.....+ .+..|..|+|+||+|+..|..++++||+++|.++.-.....|+||||.|+..|+.+++-.||.
T Consensus        28 s~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~  107 (1267)
T KOG0783|consen   28 SEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLS  107 (1267)
T ss_pred             CChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHh
Confidence            3333455665544323 558899999999999999999999999999999666666789999999999999999999999


Q ss_pred             ccCCCCCCcchHHHHhhcCCCCCcHHHHHHH
Q 038664           94 PHGNGNNTGTFDDILRKQDEEGNTPLHNAVR  124 (464)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  124 (464)
                      +|..          +..+|++|.+||...++
T Consensus       108 ~g~S----------L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  108 KGRS----------LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             cCCc----------eEEecccCCCHHHHHhh
Confidence            9976          67899999999998876

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.73  E-value=3.4e-08  Score=89.22  Aligned_cols=90  Identities=19%  Similarity=0.257  Sum_probs=81.4

Q ss_pred             cccHHHHHHHHcCCHHHHHHHHhhcCCCccccc-CCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHH
Q 038664            3 TVARVLFRALRRGDAATVRESARLNGNGILDMS-QNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAAR   81 (464)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~   81 (464)
                      .++++||..++.|+.|.--++|..+. +.|... ..|.||||+|++.|+.--++.|+-+|+| +...|.+|.||+.+|-.
T Consensus       132 ~LsrQLhasvRt~nlet~LRll~lGA-~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~GmtP~~~AR~  209 (669)
T KOG0818|consen  132 DLSKQLHSSVRTGNLETCLRLLSLGA-QANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSGMTPVDYARQ  209 (669)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHccc-ccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCCCcHHHHHHh
Confidence            46789999999999999999997665 888554 4699999999999999999999999999 88999999999999999


Q ss_pred             hCCHHHHHHHhcc
Q 038664           82 AGNFGVAKIFMRP   94 (464)
Q Consensus        82 ~g~~~~v~~Ll~~   94 (464)
                      .||.++.+.|++.
T Consensus       210 ~gH~~laeRl~e~  222 (669)
T KOG0818|consen  210 GGHHELAERLVEI  222 (669)
T ss_pred             cCchHHHHHHHHH
Confidence            9999999988874

>PF13606 Ank_3: Ankyrin repeat

Probab=98.69  E-value=2.4e-08  Score=55.13  Aligned_cols=26  Identities=31%  Similarity=0.616  Sum_probs=13.8

Q ss_pred             CCCHHHHHHHhCCHHHHHHHhcccCC
Q 038664           72 SETPMHVAARAGNFGVAKIFMRPHGN   97 (464)
Q Consensus        72 g~t~L~~A~~~g~~~~v~~Ll~~~~~   97 (464)
                      |+||||+||+.|+.+++++|+++|++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            45555555555555555555555444

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.62  E-value=1.2e-07  Score=87.36  Aligned_cols=98  Identities=20%  Similarity=0.203  Sum_probs=84.6

Q ss_pred             CCcccHHHHHHHHcCCHHHHHHHHhhcCC-Ccc--cccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHH
Q 038664            1 ESTVARVLFRALRRGDAATVRESARLNGN-GIL--DMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMH   77 (464)
Q Consensus         1 e~~~~~~L~~A~~~g~~~~~~~ll~~~~~-~~~--~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   77 (464)
                      |..+.++|..|+...|+..+.-||..+.. +++  ..+.+|+|+||.||..|++.+.+.|+=+|.| +..+|..|+|+|.
T Consensus       621 e~~lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-v~~rda~g~t~l~  699 (749)
T KOG0705|consen  621 EEPLGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-VMARDAHGRTALF  699 (749)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc-ceecccCCchhhh
Confidence            45677899999999999999777764432 233  4567889999999999999999999999998 7889999999999


Q ss_pred             HHHHhCCHHHHHHHhcccCCCC
Q 038664           78 VAARAGNFGVAKIFMRPHGNGN   99 (464)
Q Consensus        78 ~A~~~g~~~~v~~Ll~~~~~~~   99 (464)
                      ||-+.|..|++..|+++|..+.
T Consensus       700 yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  700 YARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             hHhhcccHHHHHHHHHcCCCcc
Confidence            9999999999999999987654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.62  E-value=1.6e-07  Score=85.01  Aligned_cols=89  Identities=26%  Similarity=0.362  Sum_probs=81.6

Q ss_pred             chhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHH
Q 038664           40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPL  119 (464)
Q Consensus        40 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L  119 (464)
                      --||-.++.|+.+..-.||..|++........|.||||.|++.|+.--+++|+-+|+++.          ..|.+|.||+
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~----------a~d~~GmtP~  204 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPG----------AQDSSGMTPV  204 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCC----------CCCCCCCcHH
Confidence            359999999999999999999999766777899999999999999999999999999965          7899999999


Q ss_pred             HHHHHcCCHHHHHHHHHhC
Q 038664          120 HNAVRKCDGKMAFTMIRKD  138 (464)
Q Consensus       120 ~~A~~~~~~~~~~~Ll~~~  138 (464)
                      .+|-..||.++.+.|++.-
T Consensus       205 ~~AR~~gH~~laeRl~e~~  223 (669)
T KOG0818|consen  205 DYARQGGHHELAERLVEIQ  223 (669)
T ss_pred             HHHHhcCchHHHHHHHHHH
Confidence            9999999999999888753

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.61  E-value=6.4e-08  Score=87.12  Aligned_cols=92  Identities=32%  Similarity=0.376  Sum_probs=64.3

Q ss_pred             cCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHH
Q 038664          248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHL  327 (464)
Q Consensus       248 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~  327 (464)
                      +.++..++++|++.|.+..++.+.-.+.+ ++..|.+.+|+||+|+..|+.+++++|++..  +.+++.+|..|+|||.-
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D-~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~--kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMD-LETKDYDDRTALHVAAAEGHVEVVKFLLNAC--KVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhccc-ccccccccchhheeecccCceeHHHHHHHHH--cCCCChhhccCCCcchH
Confidence            34455667777777777777777766666 4777777777777777777777777776654  34566677777777777


Q ss_pred             HHHcCCchHHHHHHh
Q 038664          328 AAINNHFNIVLILAR  342 (464)
Q Consensus       328 A~~~~~~~~v~~Ll~  342 (464)
                      |...+|.+++++|-+
T Consensus       580 A~~F~h~~v~k~L~~  594 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEE  594 (622)
T ss_pred             hHhcCcHHHHHHHHH
Confidence            777777777777653

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.57  E-value=2.2e-07  Score=90.29  Aligned_cols=133  Identities=14%  Similarity=0.079  Sum_probs=104.3

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhhcCC---CcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHH
Q 038664            5 ARVLFRALRRGDAATVRESARLNGN---GILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAAR   81 (464)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~---~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~   81 (464)
                      ......|+..||.-.+++.++....   ++|+.|+-|+++|+.|+.+.+.+++++|+++....        ..+|.+|+.
T Consensus        26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~   97 (822)
T KOG3609|consen   26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIA   97 (822)
T ss_pred             hHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHH
Confidence            4578899999999999999997664   45689999999999999999999999999986552        458999999


Q ss_pred             hCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccc
Q 038664           82 AGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYI  145 (464)
Q Consensus        82 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  145 (464)
                      .|..++|+.++.+-..........+.-...-..+-|||..|+..++.|+++.|+.+|..+....
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence            9999999999987544221111000011223456799999999999999999999998865443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.57  E-value=9.7e-08  Score=54.47  Aligned_cols=27  Identities=37%  Similarity=0.559  Sum_probs=19.2

Q ss_pred             CCCchhHHHHhcCCHHHHHHHHHhCCc
Q 038664           37 NRDTALHIAARFGHKNVVMEILELRPD   63 (464)
Q Consensus        37 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~   63 (464)
                      +|+||||+|+..|+.+++++|+++|++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~   27 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGAD   27 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCC
Confidence            466777777777777777777777766

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.50  E-value=2.9e-07  Score=84.47  Aligned_cols=89  Identities=25%  Similarity=0.319  Sum_probs=78.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhc-CCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCC
Q 038664            6 RVLFRALRRGDAATVRESARLN-GNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGN   84 (464)
Q Consensus         6 ~~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~   84 (464)
                      .++|.++...+.+.+.+.+... ...++..|..|+||||.|+..|+.+.++.|+..+++ +..+|+.|++|||-|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-v~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-VSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-ccccccccccHHHHHHHcCC
Confidence            4589999999999998866644 234668899999999999999999999999999999 78899999999999999999


Q ss_pred             HHHHHHHhccc
Q 038664           85 FGVAKIFMRPH   95 (464)
Q Consensus        85 ~~~v~~Ll~~~   95 (464)
                      .+++..++.+.
T Consensus       101 ~q~i~~vlr~~  111 (560)
T KOG0522|consen  101 EQIITEVLRHL  111 (560)
T ss_pred             HHHHHHHHHHh
Confidence            99998888754

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.50  E-value=3.8e-07  Score=83.72  Aligned_cols=90  Identities=22%  Similarity=0.341  Sum_probs=77.4

Q ss_pred             chhHHHHhcCCHHHHHHHHHh-CCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcH
Q 038664           40 TALHIAARFGHKNVVMEILEL-RPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTP  118 (464)
Q Consensus        40 t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~  118 (464)
                      -|||+++.....+-+...+.. -...++.+|..|.||||+|+..|+.+.++.|+..+++.          ..+|..|++|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv----------~~kN~~gWs~   91 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV----------SIKNNEGWSP   91 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc----------cccccccccH
Confidence            459999999988776664443 34447889999999999999999999999999999984          4899999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCC
Q 038664          119 LHNAVRKCDGKMAFTMIRKDP  139 (464)
Q Consensus       119 L~~A~~~~~~~~~~~Ll~~~~  139 (464)
                      ||.|+..|+.+++..++.+..
T Consensus        92 L~EAv~~g~~q~i~~vlr~~~  112 (560)
T KOG0522|consen   92 LHEAVSTGNEQIITEVLRHLK  112 (560)
T ss_pred             HHHHHHcCCHHHHHHHHHHhH
Confidence            999999999999999888753

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.35  E-value=1.2e-06  Score=80.95  Aligned_cols=93  Identities=20%  Similarity=0.213  Sum_probs=73.6

Q ss_pred             hHHHHhcCchHHHHHHhcCcchhhhhhc-cCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCch
Q 038664          289 LHLAAQNGHANVVVFISKLPEIEDMINS-SDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLH  367 (464)
Q Consensus       289 L~~A~~~~~~~~~~~L~~~~~~~~~~~~-~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~  367 (464)
                      |..|+.......+-+|+.++......+. .+.+|.|+||+|++.|+..+.++|+|. |+|+.++|..|+|||.+|...+.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWy-g~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWY-GVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHh-CccceecccCCchhhhhHhhccc
Confidence            3456666677777778777654433332 456789999999999999999999997 99999999999999999998887


Q ss_pred             hhH--HHhhcCCCCCCC
Q 038664          368 QND--ILEGHGGSASGT  382 (464)
Q Consensus       368 ~~~--~l~~~g~~~~~~  382 (464)
                      .+.  +|..+|..++.-
T Consensus       707 qec~d~llq~gcp~e~~  723 (749)
T KOG0705|consen  707 QECIDVLLQYGCPDECG  723 (749)
T ss_pred             HHHHHHHHHcCCCcccc
Confidence            665  588888766543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.20  E-value=4.1e-06  Score=73.67  Aligned_cols=72  Identities=25%  Similarity=0.251  Sum_probs=60.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHH
Q 038664            6 RVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVA   79 (464)
Q Consensus         6 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A   79 (464)
                      ..|+.||+.||.+.++++++ .|.++|.+|....+||.+|+..||.++||.|+++|+- -.....+|...+.-|
T Consensus        38 ~elceacR~GD~d~v~~LVe-tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi-C~rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVE-TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI-CSRDTFDGDRCHYGA  109 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHH-hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc-ccccccCcchhhhhh
Confidence            46899999999999999998 5569999999999999999999999999999999986 444556676654433

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.05  E-value=1.8e-05  Score=77.41  Aligned_cols=121  Identities=13%  Similarity=0.171  Sum_probs=99.4

Q ss_pred             CCchhHHHHhcCCHHHHHHHHHhCCc---cccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCC
Q 038664           38 RDTALHIAARFGHKNVVMEILELRPD---LVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEE  114 (464)
Q Consensus        38 g~t~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  114 (464)
                      +.--...|+.+|+...|+..++....   .++..|.-|+++|+.|+.+.|.|++++|++....                 
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~-----------------   87 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE-----------------   87 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc-----------------
Confidence            34457789999999999999987554   3678899999999999999999999999976432                 


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCcc---------ccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcC
Q 038664          115 GNTPLHNAVRKCDGKMAFTMIRKDPEL---------ICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSV  175 (464)
Q Consensus       115 g~t~L~~A~~~~~~~~~~~Ll~~~~~~---------~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~  175 (464)
                      -..+|.+|+..|..++++.++.+....         ....-.-+.||+.+|+..++.++++.|++++..+
T Consensus        88 ~gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen   88 EGDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence            156899999999999999999874322         1122345779999999999999999999999876

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.03  E-value=2.3e-05  Score=69.13  Aligned_cols=59  Identities=20%  Similarity=0.220  Sum_probs=54.7

Q ss_pred             CchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCC
Q 038664           39 DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNG   98 (464)
Q Consensus        39 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~   98 (464)
                      .--|..||+.|+.+.|++|++.|.+ +|.+|....+||.+|+.+||.++|++|+++|+--
T Consensus        37 f~elceacR~GD~d~v~~LVetgvn-VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC   95 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVN-VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC   95 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCC-cchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            3458999999999999999999888 8999999999999999999999999999999863

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.97  E-value=2.2e-05  Score=62.50  Aligned_cols=70  Identities=20%  Similarity=0.145  Sum_probs=64.3

Q ss_pred             CcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCC
Q 038664           30 GILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN   99 (464)
Q Consensus        30 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~   99 (464)
                      ++|.+|..|+|+|+.|+..|+.+.|.||+.+|...+...|..|.+++.+|=+.|..++++.|-+...+..
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets   73 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETS   73 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCC
Confidence            7889999999999999999999999999999966689999999999999999999999999998755433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.93  E-value=7.2e-06  Score=82.33  Aligned_cols=81  Identities=23%  Similarity=0.332  Sum_probs=74.2

Q ss_pred             cCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhh
Q 038664          283 KKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIV  362 (464)
Q Consensus       283 ~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a  362 (464)
                      ..|.++||.|+..+...++++|++.   ++++|..|..|+||||.+...|+...+..|+++ |++.++.+.+|++|+++|
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~---ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~-~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQN---GADVNALDSKGRTPLHHATASGHTSIACLLLKR-GADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhc---CCcchhhhccCCCcchhhhhhcccchhhhhccc-cccccccCccCcchhhHH
Confidence            3578999999999999999999998   677999999999999999999999999999975 999999999999999999


Q ss_pred             ccCch
Q 038664          363 QPSLH  367 (464)
Q Consensus       363 ~~~~~  367 (464)
                      .+..+
T Consensus       730 ~~~~~  734 (785)
T KOG0521|consen  730 MEAAN  734 (785)
T ss_pred             hhhcc
Confidence            76533

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.82  E-value=2.1e-05  Score=79.09  Aligned_cols=89  Identities=34%  Similarity=0.487  Sum_probs=80.8

Q ss_pred             CCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHH
Q 038664          249 CNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA  328 (464)
Q Consensus       249 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A  328 (464)
                      ..|.|+||.|+..|..-++++|++.+++ ++..|..|++|+|.+...|+...+..+++.   +++.+..+.+|.+||++|
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~---~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKR---GADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhccc---cccccccCccCcchhhHH
Confidence            4578999999999999999999999999 799999999999999999999999998885   788999999999999999


Q ss_pred             HHcCCchHHHHHH
Q 038664          329 AINNHFNIVLILA  341 (464)
Q Consensus       329 ~~~~~~~~v~~Ll  341 (464)
                      ....+.+++-+|.
T Consensus       730 ~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  730 MEAANADIVLLLR  742 (785)
T ss_pred             hhhccccHHHHHh
Confidence            8887777765554

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.75  E-value=8.2e-05  Score=59.32  Aligned_cols=66  Identities=14%  Similarity=0.125  Sum_probs=53.5

Q ss_pred             ccccccCCCCHHHHHHHhCCHHHHHHHhccc-CCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCc
Q 038664           65 VSVENHKSETPMHVAARAGNFGVAKIFMRPH-GNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPE  140 (464)
Q Consensus        65 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  140 (464)
                      ++.+|..|+|||++|+..|+.+.+.||+..| +.          +...|..|.+++.+|-+.|..+.+..|.+...+
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~----------vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF----------VGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCccc----------ccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            6778888888888888888888888888888 44          346788888888888888888888888877443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.65  E-value=4.8e-05  Score=76.24  Aligned_cols=126  Identities=22%  Similarity=0.152  Sum_probs=58.2

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHhhc-CCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHH
Q 038664          214 DKRDRNPLHYAAALGHFEIACRLSDE-DDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLA  292 (464)
Q Consensus       214 ~~~g~t~L~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A  292 (464)
                      ...|++.+|+++..++.-+++.+++- +.... ..|..|.-.+|+ |..++.+...+++......++.+|..|+||||+|
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~-eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDL-ELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCch-hhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            33455555555555555555555553 22111 334444444444 2333333333333333333455555555555555


Q ss_pred             HhcCchHHHHHHhcCcchhh---hhhccCCCCCcHHHHHHHcCCchHHHHHH
Q 038664          293 AQNGHANVVVFISKLPEIED---MINSSDLEGNTPLHLAAINNHFNIVLILA  341 (464)
Q Consensus       293 ~~~~~~~~~~~L~~~~~~~~---~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  341 (464)
                      +.+|+..++..|........   ++....-.|-|+-.+|..+|+..+.-+|-
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~ls  700 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLS  700 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHh
Confidence            55555555555554422111   11222234555555555555555544443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.57  E-value=9.8e-05  Score=74.07  Aligned_cols=130  Identities=17%  Similarity=0.116  Sum_probs=94.7

Q ss_pred             ccccccCCCCHHHHHHHhCCHHHHHHHhcc-cCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccc
Q 038664           65 VSVENHKSETPMHVAARAGNFGVAKIFMRP-HGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELIC  143 (464)
Q Consensus        65 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  143 (464)
                      .......|+|.+|+++..+..-+++.+++. +...          ...+.+|.-.+|+ |..++.+.+.+++.-...-++
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~----------~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~  635 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD----------LELDRDGQGVIHF-CAALGYEWAFLPISADGVAID  635 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCc----------hhhcccCCChhhH-hhhcCCceeEEEEeecccccc
Confidence            344566788899999988888888888875 3221          2456666777777 556677777777766655577


Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHHhcCcC-----cCCCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 038664          144 YINKAGQSPLSLAIDAGLTHIACCIIKEKLSV-----LDHRGPNDLTLLHIAIIKSNFVVMAKILEA  205 (464)
Q Consensus       144 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~-----~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  205 (464)
                      ++|..|+||||+|...|+..++..|+..++..     +......|.|+-..|..+|+..+.-+|-+.
T Consensus       636 i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  636 IRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            88889999999999999988888888776654     233445577888888888887777666654

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.89  E-value=0.001  Score=61.24  Aligned_cols=65  Identities=12%  Similarity=0.056  Sum_probs=50.0

Q ss_pred             hHHHHHHhcCcchh---hhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhc
Q 038664          298 ANVVVFISKLPEIE---DMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQ  363 (464)
Q Consensus       298 ~~~~~~L~~~~~~~---~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~  363 (464)
                      ...+++|.+..-.+   ......+.-.-|+||+|+..|..++|.+||++ |+|+..+|..|+||++++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Lee-g~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEE-GCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHh-cCCchhcccCCCCcccccc
Confidence            45566666552111   11223344567999999999999999999987 7999999999999999998

>smart00248 ANK ankyrin repeats

Probab=96.65  E-value=0.0028  Score=34.02  Aligned_cols=28  Identities=43%  Similarity=0.713  Sum_probs=21.3

Q ss_pred             CCCcHHHHHHHcCCchHHHHHHhcccccc
Q 038664          320 EGNTPLHLAAINNHFNIVLILARNMRVNI  348 (464)
Q Consensus       320 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~  348 (464)
                      .|.||+|+|+..++.++++.|++. +.++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~-~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDK-GADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHc-CCCC
Confidence            367888888888888888888865 5544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.61  E-value=0.0035  Score=33.64  Aligned_cols=25  Identities=36%  Similarity=0.674  Sum_probs=13.6

Q ss_pred             CCCHHHHHHHhCCHHHHHHHhcccC
Q 038664           72 SETPMHVAARAGNFGVAKIFMRPHG   96 (464)
Q Consensus        72 g~t~L~~A~~~g~~~~v~~Ll~~~~   96 (464)
                      |.||+|+|+..++.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            4555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.34  E-value=0.0067  Score=56.11  Aligned_cols=69  Identities=26%  Similarity=0.191  Sum_probs=53.5

Q ss_pred             HHHcCCHHHHHHHHhhcCCCcc-c-----ccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHH
Q 038664           11 ALRRGDAATVRESARLNGNGIL-D-----MSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAA   80 (464)
Q Consensus        11 A~~~g~~~~~~~ll~~~~~~~~-~-----~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~   80 (464)
                      -.+.+......+.|.++..+.| .     .+.--.|+||+|+..|.-++|+++|+.++| +..+|..|.||..++.
T Consensus       397 ~lkk~~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  397 RLKKKPEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             HHhccCchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCcccccc
Confidence            3445555555566666665655 2     233367999999999999999999999988 8899999999998876

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.05  E-value=0.083  Score=42.62  Aligned_cols=73  Identities=12%  Similarity=0.047  Sum_probs=47.6

Q ss_pred             CchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcH
Q 038664           39 DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTP  118 (464)
Q Consensus        39 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~  118 (464)
                      +..|..|+.++-+.++++.-+...+    .-...++....||+..+.|+|+|+-+.-.               -.+-.+.
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~----~~~~~q~LFElAC~~qkydiV~WI~qnL~---------------i~~~~~i  107 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLEN----ERYLNQELFELACEEQKYDIVKWIGQNLH---------------IYNPEDI  107 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhc----chhHHHHHHHHHHHHccccHHHHHhhccC---------------CCCchhh
Confidence            4567778888888888777665332    12345677888888888888888843221               2233455


Q ss_pred             HHHHHHcCCHHH
Q 038664          119 LHNAVRKCDGKM  130 (464)
Q Consensus       119 L~~A~~~~~~~~  130 (464)
                      +..|....+.++
T Consensus       108 FdIA~~~kDlsL  119 (192)
T PF03158_consen  108 FDIAFAKKDLSL  119 (192)
T ss_pred             hhhhhhccchhH
Confidence            667777666655

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.88  E-value=0.068  Score=43.12  Aligned_cols=139  Identities=16%  Similarity=0.141  Sum_probs=73.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCH
Q 038664          117 TPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNF  196 (464)
Q Consensus       117 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~  196 (464)
                      -.+..|++.+..++++..-+.....    -...++.+..||+..+.++++|+-+.      ..-.+..+.+..|....+.
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qn------L~i~~~~~iFdIA~~~kDl  117 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQN------LHIYNPEDIFDIAFAKKDL  117 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhc------cCCCCchhhhhhhhhccch
Confidence            3456677777777776665543221    12345566777777777777777442      2222334556666666666


Q ss_pred             HHHHH----HHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHH
Q 038664          197 VVMAK----ILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLH  272 (464)
Q Consensus       197 ~~~~~----ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  272 (464)
                      ++...    +.++...      ..+..|             ..|+              ..-|..|+..|-...+...++
T Consensus       118 sLyslGY~l~~~~~~~------~~~~d~-------------~~ll--------------~~hl~~a~~kgll~F~letlk  164 (192)
T PF03158_consen  118 SLYSLGYKLLFNRMMS------EHNEDP-------------TSLL--------------TQHLEKAAAKGLLPFVLETLK  164 (192)
T ss_pred             hHHHHHHHHHHhhccc------ccccCH-------------HHHH--------------HHHHHHHHHCCCHHHHHHHHH
Confidence            54211    0011000      000000             0000              012556666777777777777


Q ss_pred             HCCCcccccccCCCchhHHHHhcCchHHHHHHh
Q 038664          273 SYPDSIEFLDKKNRNILHLAAQNGHANVVVFIS  305 (464)
Q Consensus       273 ~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~  305 (464)
                      +|++. +.      ++|..|+.+++..++.+++
T Consensus       165 ygg~~-~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  165 YGGNV-DI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             cCCcc-cH------HHHHHHHHhhHHHHHHHhh
Confidence            76663 32      6677777777777776664

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.49  E-value=0.08  Score=44.08  Aligned_cols=118  Identities=15%  Similarity=0.176  Sum_probs=74.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCC----ccccccccCCCCHHHHHHH-
Q 038664            7 VLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRP----DLVSVENHKSETPMHVAAR-   81 (464)
Q Consensus         7 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~----~~~~~~~~~g~t~L~~A~~-   81 (464)
                      .|-.|+..-+.+.+..+....+        +-.+++-+|..++..+++-+|+.+..    +.....  .+.--+.|+.. 
T Consensus       156 sledAV~AsN~~~i~~~VtdKk--------dA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~--~~~ydieY~LS~  225 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKK--------DAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASME--KELYDIEYLLSE  225 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchH--------HHHHHHHHHhcccHHHHHHHHHhhcceecchhhhcC--cchhhHHHHHhh
Confidence            4667788888888766665332        23477888888888899999988732    211111  12224445444 


Q ss_pred             -hCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCc
Q 038664           82 -AGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPE  140 (464)
Q Consensus        82 -~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  140 (464)
                       ..+..+++++++.|--..+.      .-.+-..|.|.|.-|+++++.+++..|++.|+-
T Consensus       226 h~a~~kvL~~Fi~~Glv~vN~------~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  226 HSASYKVLEYFINRGLVDVNK------KFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cCCcHHHHHHHHhccccccch------hhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence             33567777777776432211      123456778888888888888888888887764

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.40  E-value=0.37  Score=40.26  Aligned_cols=46  Identities=15%  Similarity=0.076  Sum_probs=26.2

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhC
Q 038664          153 LSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAK  206 (464)
Q Consensus       153 l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~  206 (464)
                      |.-|+...+.+-+.-+.....+        ..+++.+++.++..+++.+|+.+.
T Consensus       157 ledAV~AsN~~~i~~~VtdKkd--------A~~Am~~si~~~K~dva~~lls~f  202 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDKKD--------AHQAMWLSIGNAKEDVALYLLSKF  202 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcchHH--------HHHHHHHHhcccHHHHHHHHHhhc
Confidence            4456666665555555442221        235666666666677777777654

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=92.84  E-value=3.8  Score=37.78  Aligned_cols=125  Identities=9%  Similarity=0.022  Sum_probs=61.3

Q ss_pred             ccHHHHHHHHcCCHHHHHHHHhhcCCCcc--cccCCCCchhHHHHhcCCHHHHHHHHHhC-Ccc-ccccccCCCCHHHHH
Q 038664            4 VARVLFRALRRGDAATVRESARLNGNGIL--DMSQNRDTALHIAARFGHKNVVMEILELR-PDL-VSVENHKSETPMHVA   79 (464)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~--~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~-~~~-~~~~~~~g~t~L~~A   79 (464)
                      .+..+..+.+.++.+....++..-...+.  ..+..|+-.+......+..+-...+++.- ++. .-..+..|.-.+..+
T Consensus        21 gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~vlqkl  100 (322)
T cd07920          21 GSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRVIQKL  100 (322)
T ss_pred             hhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence            34556666666666666666654221222  45666777777777777665544444431 111 113455555555555


Q ss_pred             HHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHH
Q 038664           80 ARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMI  135 (464)
Q Consensus        80 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  135 (464)
                      ...+..+....+++.-...     .  ..-..|..|...+..+......+..+.++
T Consensus       101 l~~~~~~~~~~i~~~l~~~-----~--~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~  149 (322)
T cd07920         101 LESISEEQISLLVKELRGH-----V--VELVKDQNGNHVIQKCIEKFPPEDLQFII  149 (322)
T ss_pred             HHhcCHHHHHHHHHHHHHC-----H--HHHhhcccccHHHHHHHHhCCHHHHHHHH
Confidence            5555544333333321100     0  01124556666666665555544444433

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.76  E-value=0.2  Score=34.75  Aligned_cols=49  Identities=20%  Similarity=0.320  Sum_probs=40.0

Q ss_pred             CCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 038664           73 ETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKD  138 (464)
Q Consensus        73 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  138 (464)
                      ...+..|+..|+.|+++.+++.+..                 ....+..|+...+.+++++|+++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~-----------------~~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP-----------------DNDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc-----------------HHHHHHHHHHHhhHHHHHHHHHhc
Confidence            3567899999999999999864421                 146799999999999999999974

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=91.87  E-value=0.29  Score=33.92  Aligned_cols=47  Identities=15%  Similarity=0.134  Sum_probs=33.2

Q ss_pred             chhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcc
Q 038664           40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRP   94 (464)
Q Consensus        40 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~   94 (464)
                      ..+..|+..|+.|+++.+++.+..        ....+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~--------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP--------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc--------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            456778888888888877765422        13467788888888888888764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=86.86  E-value=13  Score=34.23  Aligned_cols=130  Identities=8%  Similarity=-0.012  Sum_probs=72.7

Q ss_pred             cccCCCCchhHHHHhcCCHHHHHHHHHh-CCcc-ccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhh
Q 038664           33 DMSQNRDTALHIAARFGHKNVVMEILEL-RPDL-VSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRK  110 (464)
Q Consensus        33 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  110 (464)
                      ..|+.|.-.|..+...+..+....+++. .+.. .-..|..|.-.+......+..+-...+++.-..       .-.--.
T Consensus        16 ~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~-------~~~~l~   88 (322)
T cd07920          16 AKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILG-------HVVRLS   88 (322)
T ss_pred             cCCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHH-------HHHHHc
Confidence            4677888899999999988888777775 1111 123566777777777777766655555432210       000113


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHh-CC-ccccccccCCCcHHHHHHHcCCHHHHHHHH
Q 038664          111 QDEEGNTPLHNAVRKCDGKMAFTMIRK-DP-ELICYINKAGQSPLSLAIDAGLTHIACCII  169 (464)
Q Consensus       111 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~-~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll  169 (464)
                      .+..|.-.+..+...+..+....+++. .+ -..-..|..|...+..+...+..+..+.++
T Consensus        89 ~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~  149 (322)
T cd07920          89 LDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFII  149 (322)
T ss_pred             ccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHH
Confidence            555666666666666554443333333 11 111234556666666666555554444443

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	464
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		4e-20
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		7e-04
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-17
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-13
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-13
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-13
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		8e-13
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-12
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-07
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		5e-11
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-10
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-10
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-10
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-10
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		7e-10
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		9e-10
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-09
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-09
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-09
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		9e-08
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		7e-09
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		7e-09
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		8e-09
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		9e-09
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-08
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-08
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		7e-08
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		7e-08
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		7e-07
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		8e-08
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-07
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		5e-07
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-07
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-06
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		2e-06
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-06
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-06
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		7e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		8e-06
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		9e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-05
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-04
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		1e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-05
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-05
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-05
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		3e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		3e-05
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-05
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		7e-05
1uoh_A	226	Human Gankyrin Length = 226		3e-05
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		3e-05
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-04
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		4e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		5e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-04
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		5e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-04
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		7e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		7e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		8e-05
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		1e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		4e-04
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		5e-04
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		6e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		6e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		6e-04
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		7e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		8e-04
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		8e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 149/322 (46%), Gaps = 45/322 (13%)
Query: 35  SQNRDTALHIAARFGHKNVVMEILE--LRPDLVSVENHKSETPMHVAARAGNFGVAKIFM 92
           +++  T LH AAR GH N+V  +LE    P+L +   H   TP+H+AAR G+       +
Sbjct: 77  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGH---TPLHIAAREGHVETVLALL 133
Query: 93  RPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQ-- 150
               +          + K+   G TPLH A +    ++A  ++ +D     + N AG+  
Sbjct: 134 EKEAS-------QACMTKK---GFTPLHVAAKYGKVRVAELLLERD----AHPNAAGKNG 179
Query: 151 -SPLSLAIDAGLTHIACCIIKEKLSVLDHRG-------PNDLTLLHIAIIKSNFVVMAKI 202
            +PL +A+     H    I+K    +L  RG        N  T LHIA  K N V +A+ 
Sbjct: 180 LTPLHVAVH----HNNLDIVK----LLLPRGGSPHSPAWNGYTPLHIA-AKQNQVEVARS 230
Query: 203 LEAKRDLINVLDKRDRNPLHYAAALGHFE-IACRLSDEDDTLAYERDCNGQSPLHLASEN 261
           L       N    +   PLH AA  GH E +A  LS + +      + +G +PLHL ++ 
Sbjct: 231 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN--GNLGNKSGLTPLHLVAQE 288
Query: 262 GKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEG 321
           G + +   L+  +   ++   +     LH+A+  G+  +V F   L + +  +N+    G
Sbjct: 289 GHVPVADVLI-KHGVMVDATTRMGYTPLHVASHYGNIKLVKF---LLQHQADVNAKTKLG 344
Query: 322 NTPLHLAAINNHFNIVLILARN 343
            +PLH AA   H +IV +L +N
Sbjct: 345 YSPLHQAAQQGHTDIVTLLLKN 366

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 253 SPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIED 312
           +PLH+AS  G L ++K LL     S    + K    LH+AA+ GH  V  +   L + + 
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRG-ASPNVSNVKVETPLHMAARAGHTEVAKY---LLQNKA 71
Query: 313 MINSSDLEGNTPLHLAAINNHFNIV-LILARNMRVNIRAT 351
            +N+   +  TPLH AA   H N+V L+L  N   N+  T
Sbjct: 72  KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT 111

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Query: 218 RNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDS 277
           R PLH AA  GH E+  +L  E       +D NG++PLHLA+ NG L ++K LL +  D 
Sbjct: 3   RTPLHLAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 278 IEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIV 337
           +   DK  R  LHLAA+NGH  VV     L E    +N+ D  G TPLHLAA N H  +V
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKL---LLEAGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 338 LIL 340
            +L
Sbjct: 118 KLL 120

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 9/135 (6%)
Query: 210 INVLDKRDRNPLHYAAALGHFEIACRL-SDEDDTLAYERDCNGQSPLHLASENGKLSLLK 268
           +N  D   R PLH+AA  GH E+   L S   D  A  +D +G++PLH A+ENG   ++K
Sbjct: 30  VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA--KDSDGRTPLHHAAENGHKEVVK 87
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHL 327
            L+    D +   D   R  LH AA+NGH  VV + ISK  +    +N+SD +G TPL L
Sbjct: 88  LLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD----VNTSDSDGRTPLDL 142
Query: 328 AAINNHFNIVLILAR 342
           A  + +  +V +L +
Sbjct: 143 AREHGNEEVVKLLEK 157

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 73/135 (54%), Gaps = 9/135 (6%)
Query: 210 INVLDKRDRNPLHYAAALGHFEIACRL-SDEDDTLAYERDCNGQSPLHLASENGKLSLLK 268
           +N  D   R PLHYAA  GH EI   L S   D  A  +D +G++PLH A++ G   ++K
Sbjct: 30  VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA--KDSDGRTPLHYAAKEGHKEIVK 87
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHL 327
            L+    D +   D   R  LH AA+ GH  +V + ISK  +    +N+SD +G TPL L
Sbjct: 88  LLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD----VNTSDSDGRTPLDL 142
Query: 328 AAINNHFNIVLILAR 342
           A  + +  IV +L +
Sbjct: 143 AREHGNEEIVKLLEK 157

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/134 (40%), Positives = 72/134 (53%), Gaps = 9/134 (6%)
Query: 211 NVLDKRDRNPLHYAAALGHFEI-ACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKR 269
           N  D   R PLHYAA  GH EI    LS   D  A  +D +G++PLH A+ENG   ++K 
Sbjct: 31  NASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA--KDSDGRTPLHYAAENGHKEIVKL 88
Query: 270 LLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLA 328
           LL    D     D   R  LH AA+NGH  +V + +SK  +     N+SD +G TPL LA
Sbjct: 89  LLSKGADP-NAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD----PNTSDSDGRTPLDLA 143
Query: 329 AINNHFNIVLILAR 342
             + +  IV +L +
Sbjct: 144 REHGNEEIVKLLEK 157

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPE 309
           NG++PLHLA+ NG L ++K LL +  D +   DK  R  LHLAA+NGH  VV     L E
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKL---LLE 56
Query: 310 IEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
               +N+ D  G TPLHLAA N H  +V +L
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 73/134 (54%), Gaps = 7/134 (5%)
Query: 210 INVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLK 268
           +N  D   + PLH AA  GH E+    LS   D  A  +D +G++PLHLA+ENG   ++K
Sbjct: 30  VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA--KDSDGKTPLHLAAENGHKEVVK 87
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
            LL    D     D   +  LHLAA+NGH  VV  +  L +  D  N+SD +G TPL LA
Sbjct: 88  LLLSQGADP-NAKDSDGKTPLHLAAENGHKEVVKLL--LSQGAD-PNTSDSDGRTPLDLA 143
Query: 329 AINNHFNIVLILAR 342
             + +  +V +L +
Sbjct: 144 REHGNEEVVKLLEK 157

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSS 317
           A+ENG    +K LL +  D +   D   +  LHLAA+NGH  VV  +  L +  D  N+ 
Sbjct: 11  AAENGNKDRVKDLLENGAD-VNASDSDGKTPLHLAAENGHKEVVKLL--LSQGAD-PNAK 66
Query: 318 DLEGNTPLHLAAINNHFNIV-LILARNMRVNIRATNEKKQTALA 360
           D +G TPLHLAA N H  +V L+L++    N + ++ K    LA
Sbjct: 67  DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLA 110

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
           D  G +PLHLA++ G L +++ LL  Y   +   D      LHLAA NGH  +V  + K 
Sbjct: 44  DWLGHTPLHLAAKTGHLEIVEVLL-KYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKH 102
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
                 +N+ D EG TPLHLAA + H  IV +L +    ++ A ++  +TA  I
Sbjct: 103 GA---DVNAKDYEGFTPLHLAAYDGHLEIVEVLLK-YGADVNAQDKFGKTAFDI 152

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 70/143 (48%), Gaps = 7/143 (4%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
           +IL A    +N  DK    PLH AA  GH EI    L    D  A  +D +G +PLHLA+
Sbjct: 19  RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA--KDKDGYTPLHLAA 76
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL 319
             G L +++ LL +  D +   DK     LHLAA+ GH  +V  + K       +N+ D 
Sbjct: 77  REGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA---DVNAQDK 132
Query: 320 EGNTPLHLAAINNHFNIVLILAR 342
            G TP  LA    H +I  +L +
Sbjct: 133 FGKTPFDLAIREGHEDIAEVLQK 155

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
           +IL A    +N  DK    PLH AA  GH EI    L    D  A  +D +G +PLHLA+
Sbjct: 19  RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA--KDKDGYTPLHLAA 76
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL 319
             G L +++ LL +  D +   DK     LHLAA+ GH  +V  + K       +N+ D 
Sbjct: 77  REGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA---DVNAQDK 132
Query: 320 EGNTPLHLAAINNHFNIVLILAR 342
            G TP  LA  N + +I  +L +
Sbjct: 133 FGKTPFDLAIDNGNEDIAEVLQK 155

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
           +D +G +PLHLA+  G L +++ LL +  D +   DK     LHLAA+ GH  +V  + K
Sbjct: 43  KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
                  +N+ D +G TPLHLAA   H  IV +L +    ++ A ++  +TA  I
Sbjct: 102 AGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTAFDI 152

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 5/115 (4%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
            D +G +PLHLA+ NG L +++ LL +  D +  +D      L LAA  GH  +V  + K
Sbjct: 43  EDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLK 101
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
                  +N++D+EG+TPLHLAA+  H  IV +L +N   ++ A ++  +TA  I
Sbjct: 102 NGAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFDI 152

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPE 309
           +G +PLH A++NG    +K+LL    D +    K     LHLAA+NGHA +V  +  L +
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLL--LAK 64
Query: 310 IEDMINSSDLEGNTPLHLAAINNHFNIVLIL-ARNMRVNIRA 350
             D +N+   +GNTP HLA  N H  IV +L A+   VN R+
Sbjct: 65  GAD-VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
           D  G +PLHL   NG L +++ LL  Y   +   DK     LHLAA  GH  +V  + K 
Sbjct: 44  DWFGITPLHLVVNNGHLEIIEVLL-KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKY 102
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
                 +N+ D +G TPLHLAA + H  IV +L +    ++ A ++  +TA  I
Sbjct: 103 GA---DVNAMDYQGYTPLHLAAEDGHLEIVEVLLK-YGADVNAQDKFGKTAFDI 152

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
            D  G +PLHLA+  G L +++ LL +  D +  LD      LHLAA+ GH  +V  + K
Sbjct: 43  EDTYGDTPLHLAARVGHLEIVEVLLKNGAD-VNALDFSGSTPLHLAAKRGHLEIVEVLLK 101
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
                  +N+ D  G+TPLHLAA   H  IV +L +    ++ A ++  +TA  I
Sbjct: 102 YGA---DVNADDTIGSTPLHLAADTGHLEIVEVLLK-YGADVNAQDKFGKTAFDI 152

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
           RD  G +PLHLA+  G L +++ LL +  D +   D      LHLAA+ GH  +V  +  
Sbjct: 43  RDFTGWTPLHLAAHFGHLEIVEVLLKNGAD-VNAKDSLGVTPLHLAARRGHLEIVEVL-- 99
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
           L    D +N+SD  G TPLHLAA   H  IV +L +N   ++ A ++  +TA  I
Sbjct: 100 LKNGAD-VNASDSHGFTPLHLAAKRGHLEIVEVLLKN-GADVNAQDKFGKTAFDI 152

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 7/143 (4%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
           +IL A    +N  D +   PLH AA +GH EI    L    D  A  RD +G +PLHLA+
Sbjct: 31  RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNA--RDTDGWTPLHLAA 88
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL 319
           +NG L +++ LL  Y   +   D      LHLAA  GH  +V  + K       +N+ D 
Sbjct: 89  DNGHLEIVEVLL-KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA---DVNAQDK 144
Query: 320 EGNTPLHLAAINNHFNIVLILAR 342
            G T   ++  N + ++  IL +
Sbjct: 145 FGKTAFDISIDNGNEDLAEILQK 167

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
           D  G +PLHLA+  G   +++ LL    D +   D      LHLAA NGH  +V  + K 
Sbjct: 44  DDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
                 +N+ D  G TPLHLAA   H  IV +L ++   ++ A ++  +TA  I
Sbjct: 103 GA---DVNAQDAYGLTPLHLAADRGHLEIVEVLLKH-GADVNAQDKFGKTAFDI 152

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
           D NG +PLHLA+ NG+L +++ LL +  D +   D      LHLAA +GH  +V  + K 
Sbjct: 36  DDNGLTPLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILAR 342
                 +N+ D  G TPLHLAA++    IV +L +
Sbjct: 95  GA---DVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
           D +G +PLHLA+  G L +++ LL    D +  +D      LHLAA  GH  +V  + K 
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLAALIGHLEIVEVLLKH 102
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
                 +N+ D  G+TPLHLAAI  H  IV +L ++   ++ A ++  +TA  I
Sbjct: 103 GA---DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH-GADVNAQDKFGKTAFDI 152

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
           D  G +PLHLA+ +G L +++ LL    D ++  D      LHLAA  GH  +V  + K 
Sbjct: 44  DNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLEIVEVLLKY 102
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
                 +N+ D+ G+TPLHLAA   H  IV +L +    ++ A ++  +TA  I
Sbjct: 103 GA---DVNAFDMTGSTPLHLAADEGHLEIVEVLLK-YGADVNAQDKFGKTAFDI 152

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
           D +G +PLHLA+  G L +++ LL    D +  +D      LHLAA  GH  +V  + K 
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIMGSTPLHLAALIGHLEIVEVLLKH 102
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
                 +N+ D  G+TPLHLAAI  H  IV +L ++   ++ A ++  +TA  I
Sbjct: 103 GA---DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH-GADVNAQDKFGKTAFDI 152

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
           D +G +PLHLA+ NG L +++ LL +  D +   D      LHLAA  GH  +V  + K 
Sbjct: 44  DNDGYTPLHLAASNGHLEIVEVLLKNGAD-VNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
                 +N+ D +G+TPLHLAA   H  IV +L ++   ++ A ++  +TA  I
Sbjct: 103 GA---DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH-GADVNAQDKFGKTAFDI 152

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
            D +G++PLHLA+  G L +++ LL    D +   DK     LHLAA  GH  +V  + K
Sbjct: 43  EDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLEIVEVLLK 101
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
                  +N++D  G TPLHLAA   H  IV +L +    ++ A ++  +TA  I
Sbjct: 102 NGAD---VNATDTYGFTPLHLAADAGHLEIVEVLLK-YGADVNAQDKFGKTAFDI 152

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 7/131 (5%)
Query: 231 EIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILH 290
           E+   +++  D  AY  D  G++PLH+A+  G L +++ LL +  D +  +D      LH
Sbjct: 17  EVRILMANGADANAY--DHYGRTPLHMAAAVGHLEIVEVLLRNGAD-VNAVDTNGTTPLH 73
Query: 291 LAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRA 350
           LAA  GH  +V  + K       +N+ D  G TPL+LAA   H  IV +L ++   ++ A
Sbjct: 74  LAASLGHLEIVEVLLKYGA---DVNAKDATGITPLYLAAYWGHLEIVEVLLKH-GADVNA 129
Query: 351 TNEKKQTALAI 361
            ++  +TA  I
Sbjct: 130 QDKFGKTAFDI 140

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 104/213 (48%), Gaps = 13/213 (6%)
Query: 150 QSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDL 209
           +SPL  A +AG   I C ++ +  + +D    +  T L +   ++N +   K L     L
Sbjct: 12  RSPLHAAAEAGHVDI-CHMLVQAGANIDTCSEDQRTPL-MEAAENNHLEAVKYLIKAGAL 69
Query: 210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKR 269
           ++  D      LH AA  GH+E+   L          +D  G +P+  A+E   + L+K 
Sbjct: 70  VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129
Query: 270 LLHSYPDSIEFLDKKNRNILHLAAQNGHANV--VVFISKLPEIEDMINSSDLEGNTPLHL 327
           LL    D I   D +    LH AA +G  ++  ++  +K       +++ ++ G++PLH+
Sbjct: 130 LLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCD-----LHAVNIHGDSPLHI 183
Query: 328 AAINNHFN-IVLILARNMRVNIRATNEKKQTAL 359
           AA  N ++ +VL L+R+  V ++  N++ +T L
Sbjct: 184 AARENRYDCVVLFLSRDSDVTLK--NKEGETPL 214

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPE 309
           N +SPLH A+E G + +   L+ +  + I+   +  R  L  AA+N H   V ++ K   
Sbjct: 10  NKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 310 IEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
              +++  D EG+T LHLAA   H+ +V  L  N ++++   ++   T +
Sbjct: 69  ---LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 254 PLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDM 313
           PLH A++ G LS L+  L +    +  LDK     L+ A   GH ++V  +   P IE  
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRV-GVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIE-- 132
Query: 314 INSSDLEGNTPLHLAAINNHFNIV-LILARNMRVNIRATNEK 354
           +N  +  G+T LH AA   + +IV L+LA+  R ++R   +K
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK 174

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
           +IL A    +N  D     PLH AA  GH EI    L +  D  AY  D  G +PLHLA+
Sbjct: 31  RILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY--DTLGSTPLHLAA 88
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL 319
             G L +++ LL +  D +   D      LHLAA  GH  +V  + K       +N+ D 
Sbjct: 89  HFGHLEIVEVLLKNGAD-VNAKDDNGITPLHLAANRGHLEIVEVLLKYGA---DVNAQDK 144
Query: 320 EGNTPLHLAAINNHFNIVLILAR 342
            G T   ++  N + ++  IL +
Sbjct: 145 FGKTAFDISINNGNEDLAEILQK 167

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
           D  G +PLHLA+  G L +++ LL +  D +   D      LHLAA  GH  +V  +  L
Sbjct: 44  DVVGWTPLHLAAYWGHLEIVEVLLKNGAD-VNAYDTLGSTPLHLAAHFGHLEIVEVL--L 100
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
               D +N+ D  G TPLHLAA   H  IV +L +    ++ A ++  +TA  I
Sbjct: 101 KNGAD-VNAKDDNGITPLHLAANRGHLEIVEVLLK-YGADVNAQDKFGKTAFDI 152

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
           D  G +PLHLA+ +G L +++ LL    D ++  D      LHLAA  GH  +V  +  L
Sbjct: 44  DNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAYWGHLEIVEVL--L 100
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
               D +N+ D +G TPLHLAA   +  IV +L ++   ++ A ++  +TA  I
Sbjct: 101 KNGAD-VNAMDSDGMTPLHLAAKWGYLEIVEVLLKH-GADVNAQDKFGKTAFDI 152

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 245 YERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI 304
           +  D  G SPLHLA++ G  S  + LL +   S +   K +R  LH+AA  GHAN+V  +
Sbjct: 28  FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV-SRDARTKVDRTPLHMAASEGHANIVEVL 86
Query: 305 SKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILAR 342
             L    D +N+ D+   T LH A  +NH  +V +L +
Sbjct: 87  --LKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIK 121

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 7/109 (6%)
Query: 253 SPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIED 312
           +PLH A+  G LS++ +L+  Y      +D +  + +HLAAQ GH ++V ++    +  D
Sbjct: 78  TPLHWATRQGHLSMVVQLM-KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136
Query: 313 MINSSDLEGNTPLHLAAINNHF--NIVLILARNMRVNIRATNEKKQTAL 359
           M+   D  G TPL  AA   H      L+L  N+ VN+      K TAL
Sbjct: 137 MM---DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL-GDKYHKNTAL 181

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 251 GQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEI 310
           G +PLHLA+  G L +++ LL +  D +   D      LHLAA  GH  VV  + K    
Sbjct: 47  GWTPLHLAAYFGHLEIVEVLLKNGAD-VNADDSLGVTPLHLAADRGHLEVVEVLLKNGA- 104
Query: 311 EDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
              +N++D  G TPLHLAA   H  IV +L ++   ++ A ++  +TA  I
Sbjct: 105 --DVNANDHNGFTPLHLAANIGHLEIVEVLLKH-GADVNAQDKFGKTAFDI 152

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCN-----GQSPL 255
           +IL A    +N LD+    PLH AA LGH EI   L      L Y  D N     G +PL
Sbjct: 31  RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVL------LKYGADVNAEDNFGITPL 84
Query: 256 HLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
           HLA+  G L +++ LL    D +   DK  +    ++  NG+ ++   + KL
Sbjct: 85  HLAAIRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
           R+L +    +  LD+     LHLAAQ GH  +V  + K       +N+ D  G TPLHLA
Sbjct: 31  RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA---DVNAEDNFGITPLHLA 87
Query: 329 AINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
           AI  H  IV +L ++   ++ A ++  +TA  I
Sbjct: 88  AIRGHLEIVEVLLKH-GADVNAQDKFGKTAFDI 119

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 185 TLLHIAII-KSNFVVMAKILEAKRDL--INVLDKRDRNPLHYAAALGHFEIACRL--SDE 239
           + LH+AII +   + M  I + K DL  +N  +   + PLH A      EIA  L  +  
Sbjct: 7   SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC 66
Query: 240 DDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSY--PDSIEFLDKKNRN---ILHLAAQ 294
           D  L   RD  G +PLHLA E G L+ +  L  S   P     L   N N    LHLA+ 
Sbjct: 67  DPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 123
Query: 295 NGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
           +G+  +V  +  L    D+       G T LHLA
Sbjct: 124 HGYLGIVELLVSLG--ADVNAQEPCNGRTALHLA 155

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 78/174 (44%), Gaps = 16/174 (9%)
Query: 185 TLLHIAII-KSNFVVMAKILEAKRDL--INVLDKRDRNPLHYAAALGHFEIACRL--SDE 239
           + LH+AII +   + M  I + K DL  +N  +   + PLH A      EIA  L  +  
Sbjct: 10  SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC 69
Query: 240 DDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSY--PDSIEFLDKKNRN---ILHLAAQ 294
           D  L   RD  G +PLHLA E G L+ +  L  S   P     L   N N    LHLA+ 
Sbjct: 70  DPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 126
Query: 295 NGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAA-INNHFNIVLILARNMRVN 347
           +G+  +V  +  L    D+       G T LHLA  + N   + L+L     VN
Sbjct: 127 HGYLGIVELLVSLG--ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
           +D +G SP+H A+  G L  LK L+    D +  LD      +HLA + GH++VV F++ 
Sbjct: 72  QDASGTSPVHDAARTGFLDTLKVLVEHGAD-VNALDSTGSLPIHLAIREGHSSVVSFLA- 129
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRV 346
            PE +  ++  D  G TPL LA      N++ IL  +M +
Sbjct: 130 -PESD--LHHRDASGLTPLELARQRGAQNLMDILQGHMMI 166

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
           +IL A    +N +D     PLH AA  GH EI    L    D  A  RD  G++PLHLA+
Sbjct: 31  RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA--RDIWGRTPLHLAA 88
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
             G L +++ LL  Y   +   DK  +    ++  NG+ ++   + KL
Sbjct: 89  TVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
           R+L +    +  +D      LHLAA+ GH  +V  + K       +N+ D+ G TPLHLA
Sbjct: 31  RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD---VNARDIWGRTPLHLA 87
Query: 329 AINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
           A   H  IV +L      ++ A ++  +TA  I
Sbjct: 88  ATVGHLEIVEVLLE-YGADVNAQDKFGKTAFDI 119

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
           +D +G SP+H A+  G L  LK L+    D +  LD      +HLA + GH++VV F++ 
Sbjct: 70  QDASGTSPVHDAARTGFLDTLKVLVEHGAD-VNALDSTGSLPIHLAIREGHSSVVSFLA- 127
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNI 348
            PE +  ++  D  G TPL LA      N++ IL  +M + +
Sbjct: 128 -PESD--LHHRDASGLTPLELARQRGAQNLMDILQGHMMIPM 166

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 250 NGQSPLHLASENGKLSLLKRLL-HSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLP 308
           +G SPLH+A+ +G+  L+  LL H         D+     LHLA Q GH  VV     L 
Sbjct: 85  DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVP--LHLACQQGHFQVV---KCLL 139
Query: 309 EIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
           +     N  DL GNTPL  A    H  +V +L ++   +I A+N K  TAL
Sbjct: 140 DSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQH-GASINASNNKGNTAL 189

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 14/186 (7%)
Query: 107 ILRKQDEEGNTPLHNAVRKCDGKMAFTMIRK--DPELICYINKAGQSPLSLAIDAGLTHI 164
           +L ++D++G  PLH +V     ++   ++ K  +  L  Y + +G +P  +A   G   +
Sbjct: 28  LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 165 ACCI----IKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNP 220
              +    +K  L+ + ++G   +T LH+A+ K  F V   ++E     + + DK ++ P
Sbjct: 88  VKSLYDRPLKPDLNKITNQG---VTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIP 143
Query: 221 LHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLH--LASENGKLSLLKRLLHSYPDSI 278
           LH AA++G  ++   L     +    +D  G +PL   LA  +G  ++L  L+  Y    
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL--LVEKYGAEY 201
Query: 279 EFLDKK 284
           + +D K
Sbjct: 202 DLVDNK 207

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 14/186 (7%)
Query: 107 ILRKQDEEGNTPLHNAVRKCDGKMAFTMIRK--DPELICYINKAGQSPLSLAIDAGLTHI 164
           +L ++D++G  PLH +V     ++   ++ K  +  L  Y + +G +P  +A   G   +
Sbjct: 28  LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 165 ACCI----IKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNP 220
              +    +K  L+ + ++G   +T LH+A+ K  F V   ++E     + + DK ++ P
Sbjct: 88  VKSLYDRPLKPDLNKITNQG---VTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIP 143
Query: 221 LHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLH--LASENGKLSLLKRLLHSYPDSI 278
           LH AA++G  ++   L     +    +D  G +PL   LA  +G  ++L  L+  Y    
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL--LVEKYGAEY 201
Query: 279 EFLDKK 284
           + +D K
Sbjct: 202 DLVDNK 207

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 14/186 (7%)
Query: 107 ILRKQDEEGNTPLHNAVRKCDGKMAFTMIRK--DPELICYINKAGQSPLSLAIDAGLTHI 164
           +L ++D++G  PLH +V     ++   ++ K  +  L  Y + +G +P  +A   G   +
Sbjct: 28  LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 165 ACCI----IKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNP 220
              +    +K  L+ + ++G   +T LH+A+ K  F V   ++E     + + DK ++ P
Sbjct: 88  VKSLYDRPLKPDLNKITNQG---VTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIP 143
Query: 221 LHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLH--LASENGKLSLLKRLLHSYPDSI 278
           LH AA++G  ++   L     +    +D  G +PL   LA  +G  ++L  L+  Y    
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL--LVEKYGAEY 201
Query: 279 EFLDKK 284
           + +D K
Sbjct: 202 DLVDNK 207

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 79/199 (39%), Gaps = 47/199 (23%)
Query: 205 AKRDLINVLDKRDRNPLHYAAALGHFEI-------ACRLSDEDDTLAYERDCNGQSPLHL 257
           A + L    D+  R  LH+A + GH EI          ++D+DD         G SPLH+
Sbjct: 29  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA--------GWSPLHI 80
Query: 258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI---SKLPEIED-- 312
           A+  G+  ++K LL      +  +++     LH AA      + V +      P+ +D  
Sbjct: 81  AASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 139
Query: 313 ---------------MI----------NSSDLEGNTPLHLAAINNHFNIVLILARNMRVN 347
                          MI          N  D EGNTPLHLA          +L  +   +
Sbjct: 140 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV-SQGAS 198
Query: 348 IRATNEKKQTALAIVQPSL 366
           I   N++++T L + +  L
Sbjct: 199 IYIENKEEKTPLQVAKGGL 217

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCN-----GQSPL 255
           +IL A    +N +D     PLH AA  GH EI   L      L +  D N     G++PL
Sbjct: 31  RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVL------LKHGADVNASDIWGRTPL 84
Query: 256 HLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
           HLA+  G L +++ LL  Y   +   DK  +    ++  NG+ ++   + KL
Sbjct: 85  HLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
           R+L +    +  +D      LHLAA+ GH  +V  + K       +N+SD+ G TPLHLA
Sbjct: 31  RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD---VNASDIWGRTPLHLA 87
Query: 329 AINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
           A   H  IV +L      ++ A ++  +TA  I
Sbjct: 88  ATVGHLEIVEVLLE-YGADVNAQDKFGKTAFDI 119

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 79/199 (39%), Gaps = 47/199 (23%)
Query: 205 AKRDLINVLDKRDRNPLHYAAALGHFEI-------ACRLSDEDDTLAYERDCNGQSPLHL 257
           A + L    D+  R  LH+A + GH EI          ++D+DD         G SPLH+
Sbjct: 28  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA--------GWSPLHI 79
Query: 258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI---SKLPEIED-- 312
           A+  G+  ++K LL      +  +++     LH AA      + V +      P+ +D  
Sbjct: 80  AASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 313 ---------------MI----------NSSDLEGNTPLHLAAINNHFNIVLILARNMRVN 347
                          MI          N  D EGNTPLHLA          +L  +   +
Sbjct: 139 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV-SQGAS 197
Query: 348 IRATNEKKQTALAIVQPSL 366
           I   N++++T L + +  L
Sbjct: 198 IYIENKEEKTPLQVAKGGL 216

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
           +D +G SP+H A+  G L  LK L+    D +   D      +HLA Q GH  VV F++ 
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAA 122
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNM 344
               E  ++  D  G TPL LA      ++V IL  +M
Sbjct: 123 ----ESDLHRRDARGLTPLELALQRGAQDLVDILQGHM 156

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
           +D +G SP+H A+  G L  LK L+    D +   D      +HLA Q GH  VV F++ 
Sbjct: 70  QDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAA 128
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNM 344
               E  ++  D  G TPL LA      ++V IL  +M
Sbjct: 129 ----ESDLHRRDARGLTPLELALQRGAQDLVDILQGHM 162

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCN-----GQSPL 255
           +IL A    +N +D     PLH AA  GH EI   L      L +  D N     G++PL
Sbjct: 31  RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVL------LKHGADVNASDSWGRTPL 84
Query: 256 HLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
           HLA+  G L +++ LL  Y   +   DK  +    ++  NG+ ++   + KL
Sbjct: 85  HLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
           R+L +    +  +D      LHLAA+ GH  +V  + K       +N+SD  G TPLHLA
Sbjct: 31  RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD---VNASDSWGRTPLHLA 87
Query: 329 AINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
           A   H  IV +L      ++ A ++  +TA  I
Sbjct: 88  ATVGHLEIVEVLLE-YGADVNAQDKFGKTAFDI 119

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 177 DHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRL 236
           +HRG    TLLHIA IK +   +  +L+   D  NV D     PLH A   GH ++   L
Sbjct: 7   NHRGE---TLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELL 62
Query: 237 SDED---DTLAYERDCNGQSPLHLASENGKLSLLKRLL 271
                  +T  Y+ D    SPLH A++NG + ++K LL
Sbjct: 63  LQHKALVNTTGYQND----SPLHDAAKNGHVDIVKLLL 96

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 8   LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSV 67
           L  A R G +A V E   + G  I  M++  DT LH+AA  GH+++V ++L+ + D+ +V
Sbjct: 38  LHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 96
Query: 68  ENHKSETPMHVAARAGNFGVAK 89
             H    P+H A   G   VA+
Sbjct: 97  NEH-GNVPLHYACFWGQDQVAE 117

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
           D +G SPLH A   G+ ++++ L+      I  +++ +   LHLAA +GH ++V    KL
Sbjct: 31  DDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDDTPLHLAASHGHRDIV---QKL 86
Query: 308 PEIEDMINSSDLEGNTPLHLAAI 330
            + +  IN+ +  GN PLH A  
Sbjct: 87  LQYKADINAVNEHGNVPLHYACF 109

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 8   LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSV 67
           L  A R G +A V E   + G  I  M++  DT LH+AA  GH+++V ++L+ + D+ +V
Sbjct: 43  LHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 101
Query: 68  ENHKSETPMHVAARAGNFGVAK 89
             H    P+H A   G   VA+
Sbjct: 102 NEH-GNVPLHYACFWGQDQVAE 122

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
           D +G SPLH A   G+ ++++ L+      I  +++ +   LHLAA +GH ++V    KL
Sbjct: 36  DDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDDTPLHLAASHGHRDIV---QKL 91
Query: 308 PEIEDMINSSDLEGNTPLHLAAI 330
            + +  IN+ +  GN PLH A  
Sbjct: 92  LQYKADINAVNEHGNVPLHYACF 114

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 16/160 (10%)
Query: 2   STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
           S   R L  A + GD  TV++   +      D+   + T LH AA +   +VV  +L+  
Sbjct: 6   SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65
Query: 62  PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
            D V  ++     P+H A   G++ VA++ ++ HG          ++   D    TPLH 
Sbjct: 66  AD-VHAKDKGGLVPLHNACSYGHYEVAELLVK-HGA---------VVNVADLWKFTPLHE 114
Query: 122 AVRKCDGKMAFTMIR--KDPELICYINKAGQSPLSLAIDA 159
           A  K   ++   +++   DP      N+ G +PL L  D 
Sbjct: 115 AAAKGKYEICKLLLQHGADPT---KKNRDGNTPLDLVKDG 151

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 16/160 (10%)
Query: 2   STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
           S   R L  A + GD  TV++   +      D+   + T LH AA +   +VV  +L+  
Sbjct: 10  SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 69
Query: 62  PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
            D V  ++     P+H A   G++ VA++ ++ HG          ++   D    TPLH 
Sbjct: 70  AD-VHAKDKGGLVPLHNACSYGHYEVAELLVK-HGA---------VVNVADLWKFTPLHE 118
Query: 122 AVRKCDGKMAFTMIR--KDPELICYINKAGQSPLSLAIDA 159
           A  K   ++   +++   DP      N+ G +PL L  D 
Sbjct: 119 AAAKGKYEICKLLLQHGADPT---KKNRDGNTPLDLVKDG 155

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 16/160 (10%)
Query: 2   STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
           S   R L  A + GD  TV++   +      D+   + T LH AA +   +VV  +L+  
Sbjct: 8   SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 67
Query: 62  PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
            D V  ++     P+H A   G++ VA++ ++ HG          ++   D    TPLH 
Sbjct: 68  AD-VHAKDKGGLVPLHNACSYGHYEVAELLVK-HGA---------VVNVADLWKFTPLHE 116
Query: 122 AVRKCDGKMAFTMIR--KDPELICYINKAGQSPLSLAIDA 159
           A  K   ++   +++   DP      N+ G +PL L  D 
Sbjct: 117 AAAKGKYEICKLLLQHGADPT---KKNRDGNTPLDLVKDG 153

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 216 RDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYP 275
           + R  LHYAA + +  I   L  E  +   ++D +G++P+ LA++ G++ ++  L+    
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA 337
Query: 276 DSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIE 311
            S+E +D  +     LA  N H N+V +F    PE E
Sbjct: 338 -SVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 77/199 (38%), Gaps = 47/199 (23%)
Query: 205 AKRDLINVLDKRDRNPLHYAAALGHFEI-------ACRLSDEDDTLAYERDCNGQSPLHL 257
           A + L    D+  R  LH+A + GH EI          ++D+DD         G SPLH+
Sbjct: 28  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA--------GWSPLHI 79
Query: 258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI---SKLPEIEDMI 314
           A+  G+  ++K LL      +  +++     LH AA      + V +      P+ +D  
Sbjct: 80  AASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 315 NSS---------------------------DLEGNTPLHLAAINNHFNIVLILARNMRVN 347
           +++                           D EGNTPLHLA           L      +
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV-TQGAS 197
Query: 348 IRATNEKKQTALAIVQPSL 366
           I   N++++T L + +  L
Sbjct: 198 IYIENKEEKTPLQVAKGGL 216

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 76/199 (38%), Gaps = 47/199 (23%)
Query: 205 AKRDLINVLDKRDRNPLHYAAALGHFEI-------ACRLSDEDDTLAYERDCNGQSPLHL 257
           A + L    D+  R  LH+A + GH EI          ++D+DD         G SPLH+
Sbjct: 28  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA--------GWSPLHI 79
Query: 258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI---SKLPEIEDMI 314
           A+  G   ++K LL      +  +++     LH AA      + V +      P+ +D  
Sbjct: 80  AASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 315 NSS---------------------------DLEGNTPLHLAAINNHFNIVLILARNMRVN 347
           +++                           D EGNTPLHLA           L      +
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV-TQGAS 197
Query: 348 IRATNEKKQTALAIVQPSL 366
           I   N++++T L + +  L
Sbjct: 198 IYIENKEEKTPLQVAKGGL 216

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 5/146 (3%)
Query: 217 DRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPD 276
           D   +H  AA G  +       + D L  + D  G +PL  AS  G++  ++ LL    D
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 277 SIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNI 336
               L K+  + L LA+  G+ ++V     L E +  IN  D  G TPL  A   NH   
Sbjct: 62  P-HILAKERESALSLASTGGYTDIVGL---LLERDVDINIYDWNGGTPLLYAVRGNHVKC 117
Query: 337 V-LILARNMRVNIRATNEKKQTALAI 361
           V  +LAR   +   A +      LA+
Sbjct: 118 VEALLARGADLTTEADSGYTPMDLAV 143

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 5/146 (3%)
Query: 217 DRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPD 276
           D   +H  AA G  +       + D L  + D  G +PL  AS  G++  ++ LL    D
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 277 SIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNI 336
               L K+  + L LA+  G+ ++V     L E +  IN  D  G TPL  A   NH   
Sbjct: 62  P-HILAKERESALSLASTGGYTDIVGL---LLERDVDINIYDWNGGTPLLYAVHGNHVKC 117
Query: 337 V-LILARNMRVNIRATNEKKQTALAI 361
           V  +LAR   +   A +      LA+
Sbjct: 118 VEALLARGADLTTEADSGYTPMDLAV 143

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 262 GKLSLLKRLL--HSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL 319
           G   + +RLL   + PD     D+    ++H AA+ G  +    +  L E +  +N  D 
Sbjct: 48  GNPEIARRLLLRGANPD---LKDRTGFAVIHDAARAGQLDT---LQTLLEFQADVNIEDN 101
Query: 320 EGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTA 358
           EGN PLHLAA   H  +V  L ++   N+   N K  TA
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
           +IL A    +N  D++   PLH AA   H EI    L    D  A++ D  G +PLHLA+
Sbjct: 31  RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND--GSTPLHLAA 88
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
             G L +++ LL    D +   DK  +    ++  NG+ ++   + KL
Sbjct: 89  LFGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 262 GKLSLLKRLL--HSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL 319
           G   + +RLL   + PD     D+    ++H AA+ G  +    +  L E +  +N  D 
Sbjct: 48  GNPEIARRLLLRGANPD---LKDRTGNAVIHDAARAGFLDT---LQTLLEFQADVNIEDN 101
Query: 320 EGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTA 358
           EGN PLHLAA   H  +V  L ++   N+   N K  TA
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCN-----GQSPL 255
           +IL A    +N  D     PLH AA LGH EI   L      L    D N     G++PL
Sbjct: 31  RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVL------LKNGADVNATGNTGRTPL 84
Query: 256 HLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
           HLA+    L +++ LL    D +   DK  +    ++  NG+ ++   + KL
Sbjct: 85  HLAAWADHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 92/244 (37%), Gaps = 39/244 (15%)
Query: 157 IDAGLTHIACCIIKEKLSVLD--HRGPN-------DLTLLHIAIIKSNFVVMAKILEAKR 207
            D G   +A C   +   VL    RG +        LT LH A I  N V M K L    
Sbjct: 38  FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDN-VDMVKFLVENG 96
Query: 208 DLINVLDKRDRNPLHYAAALGHFEIACRL----------SDEDDT-----------LAYE 246
             IN  D     PLH AA+ G+ +IA  L          + E DT              +
Sbjct: 97  ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLD----KKNRNILHLAAQNGHANVVV 302
            + N Q     A+   +  ++ R    + +S    D    K     LH+AA  G+  V+ 
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216
Query: 303 FISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIV 362
               L +    +N  D +G TPLH AA         IL  N+  ++ A N+  QTA  + 
Sbjct: 217 L---LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVA 272
Query: 363 QPSL 366
              +
Sbjct: 273 DEDI 276

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	464
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-42
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-40
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-39
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-32
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-38
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-37
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-27
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-33
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-33
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-23
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-21
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-21
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-29
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-29
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-29
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-26
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-26
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-23
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-20
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-26
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-21
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-24
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-23
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-24
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-23
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-21
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-24
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-21
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-24
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-22
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-23
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-20
2rfa_A	232	Transient receptor potential cation channel subfa	1e-22
2rfa_A	232	Transient receptor potential cation channel subfa	3e-19
2rfa_A	232	Transient receptor potential cation channel subfa	2e-18
2rfa_A	232	Transient receptor potential cation channel subfa	1e-15
2rfa_A	232	Transient receptor potential cation channel subfa	1e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-21
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-15
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-18
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-20
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-22
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-22
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-22
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-21
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-22
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-20
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-12
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-20
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-12
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-21
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-20
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-20
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-14
2pnn_A	273	Transient receptor potential cation channel subfa	2e-20
2pnn_A	273	Transient receptor potential cation channel subfa	8e-18
2pnn_A	273	Transient receptor potential cation channel subfa	1e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-18
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-19
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-15
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-09
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-19
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-04
2etb_A	256	Transient receptor potential cation channel subfam	3e-18
2etb_A	256	Transient receptor potential cation channel subfam	2e-16
2etb_A	256	Transient receptor potential cation channel subfam	6e-10
2etb_A	256	Transient receptor potential cation channel subfam	1e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-10
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-16
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-16
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-09
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-16
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-15
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-15
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-15
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-07

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  154 bits (392), Expect = 2e-42
 Identities = 91/331 (27%), Positives = 142/331 (42%), Gaps = 34/331 (10%)

Query: 36  QNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPH 95
           ++  T LH+A+  GH  +V  +L+      +V N K ETP+H+AARAG+  VAK  ++  
Sbjct: 12  ESGLTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNK 70

Query: 96  GNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRK--DPELICYINKAGQSPL 153
              N           + ++  TPLH A R     M   ++    +P L      AG +PL
Sbjct: 71  AKVN----------AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA---TTAGHTPL 117

Query: 154 SLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVL 213
            +A   G       +++++ S          T LH+A  K   V +A++L  +    N  
Sbjct: 118 HIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAA-KYGKVRVAELLLERDAHPNAA 175

Query: 214 DKRDRNPLHYAAALGHFEIACRL----SDEDDTLAYERDCNGQSPLHLASENGKLSLLKR 269
            K    PLH A    + +I   L                 NG +PLH+A++  ++ + + 
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH-----SPAWNGYTPLHIAAKQNQVEVARS 230

Query: 270 LLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLA 328
           LL            +    LHLAAQ GHA +V + +SK        N  +  G TPLHL 
Sbjct: 231 LLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG----NLGNKSGLTPLHLV 285

Query: 329 AINNHFNIVLILARNMRVNIRATNEKKQTAL 359
           A   H  +  +L ++  V + AT     T L
Sbjct: 286 AQEGHVPVADVLIKH-GVMVDATTRMGYTPL 315

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  149 bits (379), Expect = 2e-40
 Identities = 83/344 (24%), Positives = 142/344 (41%), Gaps = 33/344 (9%)

Query: 35  SQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRP 94
           +    T LHIAAR GH   V+ +LE      +    K  TP+HVAA+ G   VA++ +  
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLER 168

Query: 95  HGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLS 154
             + N             + G TPLH AV   +  +   ++ +           G +PL 
Sbjct: 169 DAHPN----------AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLH 217

Query: 155 LAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLD 214
           +A       +A  +++   S  +      +T LH+A  +     M  +L +K+   N+ +
Sbjct: 218 IAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAA-QEGHAEMVALLLSKQANGNLGN 275

Query: 215 KRDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLKR 269
           K    PLH  A  GH  +A  L      + +          G +PLH+AS  G + L+K 
Sbjct: 276 KSGLTPLHLVAQEGHVPVADVL------IKHGVMVDATTRMGYTPLHVASHYGNIKLVKF 329

Query: 270 LLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLA 328
           LL    D +    K   + LH AAQ GH ++V + +          N    +G TPL +A
Sbjct: 330 LLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP----NEVSSDGTTPLAIA 384

Query: 329 AINNHFNIV--LILARNMRVNIRATNEKKQTALAIVQPSLHQND 370
               + ++   L +  +    +  +++ + +    V   L  ++
Sbjct: 385 KRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILDVSE 428

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  147 bits (373), Expect = 1e-39
 Identities = 81/327 (24%), Positives = 138/327 (42%), Gaps = 30/327 (9%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN 99
           T LH AAR GH N+V  +LE   +  ++      TP+H+AAR G+       +    +  
Sbjct: 82  TPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 140

Query: 100 NTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDA 159
                        ++G TPLH A +    ++A  ++ +D        K G +PL +A+  
Sbjct: 141 ----------CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA-AGKNGLTPLHVAVHH 189

Query: 160 GLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRN 219
               I   ++    S       N  T LHIA  ++   V   +L+      N    +   
Sbjct: 190 NNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVT 247

Query: 220 PLHYAAALGHFEIACRL----SDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYP 275
           PLH AA  GH E+   L    ++ +       + +G +PLHL ++ G + +   L+    
Sbjct: 248 PLHLAAQEGHAEMVALLLSKQANGN-----LGNKSGLTPLHLVAQEGHVPVADVLIKHGV 302

Query: 276 DSIEFLDKKNRNILHLAAQNGHANVVVF-ISKLPEIEDMINSSDLEGNTPLHLAAINNHF 334
             ++   +     LH+A+  G+  +V F +    ++    N+    G +PLH AA   H 
Sbjct: 303 M-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV----NAKTKLGYSPLHQAAQQGHT 357

Query: 335 NIVLILARNMRVNIRATNEKKQTALAI 361
           +IV +L +N   +    +    T LAI
Sbjct: 358 DIVTLLLKN-GASPNEVSSDGTTPLAI 383

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  125 bits (317), Expect = 6e-32
 Identities = 73/301 (24%), Positives = 117/301 (38%), Gaps = 31/301 (10%)

Query: 65  VSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVR 124
                    TP+HVA+  G+  + K  ++   + N            + +  TPLH A R
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPN----------VSNVKVETPLHMAAR 56

Query: 125 KCDGKMAFTMIRKDPELICYINKA---GQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGP 181
               ++A  +++        +N      Q+PL  A   G T++   +++   +  +    
Sbjct: 57  AGHTEVAKYLLQNK----AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATT 111

Query: 182 NDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDD 241
              T LHIA  +   V     L  K      + K+   PLH AA  G   +A  L + D 
Sbjct: 112 AGHTPLHIA-AREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD- 169

Query: 242 TLAY--ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHAN 299
             A+      NG +PLH+A  +  L ++K LL     S           LH+AA+     
Sbjct: 170 --AHPNAAGKNGLTPLHVAVHHNNLDIVKLLL-PRGGSPHSPAWNGYTPLHIAAKQNQVE 226

Query: 300 VV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTA 358
           V    +          N+  ++G TPLHLAA   H  +V +L    + N    N+   T 
Sbjct: 227 VARSLLQYGGS----ANAESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTP 281

Query: 359 L 359
           L
Sbjct: 282 L 282

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.0 bits (149), Expect = 3e-10
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 277 SIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFN 335
           S     +     LH+A+  GH  +V   + +        N S+++  TPLH+AA   H  
Sbjct: 6   SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGAS----PNVSNVKVETPLHMAARAGHTE 61

Query: 336 IVLILARNMRVNIRATNEKKQTAL 359
           +   L +N +  + A  +  QT L
Sbjct: 62  VAKYLLQN-KAKVNAKAKDDQTPL 84

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  141 bits (357), Expect = 4e-38
 Identities = 58/335 (17%), Positives = 105/335 (31%), Gaps = 44/335 (13%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN 99
             +H+AAR G  + V  ++E      +++N    T +H+A + G    AK      G  +
Sbjct: 22  EKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLAS-VGEVH 79

Query: 100 NTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDA 159
           +              G  P+H AV     K    +      L+    + GQ P SL  + 
Sbjct: 80  S-----------LWHGQKPIHLAVMA--NKTDLVVA-----LVEGAKERGQMPESLLNEC 121

Query: 160 GLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIK-SNFVVMAKILEAKRDLINVLDKRDR 218
               +       K      +G    T LH  +     ++ M KIL          DK D 
Sbjct: 122 DEREVNEIGSHVK----HCKG---QTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADE 174

Query: 219 NPLHYAAALGHFEIACRLSDEDDTLA----YERDCNGQSPLHLASENGKLSLLKRLLHSY 274
            PL  A    + E    + D   + +       +  G S LH A       +  R +   
Sbjct: 175 TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG 234

Query: 275 PDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDM---------INSSDLEGNTP 324
            D +   D ++   L+L+ +     +    + K                +    +     
Sbjct: 235 ID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDF 293

Query: 325 LHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
           +  AA  +   ++ +L       +  +        
Sbjct: 294 VPAAADPSKQEVLQLLQEK-LDEVVRSLNTGAGGA 327

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  138 bits (349), Expect = 6e-37
 Identities = 53/355 (14%), Positives = 103/355 (29%), Gaps = 74/355 (20%)

Query: 37  NRDTALHIAARFGHKNVVMEILELRPDLVS----VENHKSETPMHVAARAGNFGVAKIFM 92
              TALH+A +FG  +      +    L S          + P+H+A  A    +     
Sbjct: 52  FGCTALHLACKFGCVDTA----KY---LASVGEVHSLWHGQKPIHLAVMANKTDLVVAL- 103

Query: 93  RPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSP 152
                          +    E G  P        + ++               +  GQ+ 
Sbjct: 104 ---------------VEGAKERGQMPESLLNECDEREVNEIGSHVK-------HCKGQTA 141

Query: 153 LSLAIDAGLTHIACCIIKEKLSV---LDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDL 209
           L   +  G  ++   +IK  + +      +   D T L  A+   N   +  +++     
Sbjct: 142 LHWCVGLGPEYLE--MIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSK 199

Query: 210 ----INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASE 260
               ++  +K+  + LH+A  +   ++A R       +         D     PL+L+  
Sbjct: 200 SSLRLDYANKQGNSHLHWAILINWEDVAMRF------VEMGIDVNMEDNEHTVPLYLSVR 253

Query: 261 NGKLSLLKRLLHSYPDSIEFLDKKNRN-------------ILHLAAQNGHANVV-VFISK 306
              + L K LL    D          N              +  AA      V+ +   K
Sbjct: 254 AAMVLLTKELL-QKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK 312

Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
           L E+      S   G              +  +        +R  +  +  + A+
Sbjct: 313 LDEV----VRSLNTGAGGAVKRKKKAAPAVKRMKLAP-SAPVRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  111 bits (281), Expect = 2e-27
 Identities = 44/255 (17%), Positives = 92/255 (36%), Gaps = 26/255 (10%)

Query: 110 KQDEEGNTPLHNAVRKCDGKMAFTMIRK--DPELICYINKAGQSPLSLAIDAGLTHIACC 167
           K D+E    +H A RK        +I     P +    N+ G + L LA   G    A  
Sbjct: 15  KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTI---QNRFGCTALHLACKFGCVDTAKY 71

Query: 168 IIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAAL 227
           +             +    +H+A + +N   +         L+    +R + P       
Sbjct: 72  LASVGEVHSLW---HGQKPIHLA-VMANKTDLVVA------LVEGAKERGQMPESLLNEC 121

Query: 228 GHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSL-LKRLLHSYPDSIEFLDKKNR 286
              E+        +  ++ + C GQ+ LH     G   L + ++L     S    DK + 
Sbjct: 122 DEREVN-------EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADE 174

Query: 287 NILHLAAQNGHANVV-VFISKLPEIEDM-INSSDLEGNTPLHLAAINNHFNIVLILARNM 344
             L  A +  +   + + +  +P    + ++ ++ +GN+ LH A + N  ++ +      
Sbjct: 175 TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM- 233

Query: 345 RVNIRATNEKKQTAL 359
            +++   + +    L
Sbjct: 234 GIDVNMEDNEHTVPL 248

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 84.9 bits (211), Expect = 3e-18
 Identities = 36/248 (14%), Positives = 74/248 (29%), Gaps = 45/248 (18%)

Query: 36  QNRDTALHIAARFGHKNVVMEILELRPDLVS------VENHKSETPMHVAARAGNFGVAK 89
               TALH     G + +  E++++   LV        ++   ETP+  A    N     
Sbjct: 136 CKGQTALHWCVGLGPEYL--EMIKI---LVQLGASPTAKDKADETPLMRAMEFRNREALD 190

Query: 90  --IFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINK 147
             +   P  +          L   +++GN+ LH A+      +A   +    + +   + 
Sbjct: 191 LMMDTVPSKSSLR-------LDYANKQGNSHLHWAILINWEDVAMRFVEMGID-VNMEDN 242

Query: 148 AGQSPLSLAIDAGLTHIACCIIKEKLSVLD------------HRGPNDLTLLHIAIIKSN 195
               PL L++ A +  +   ++++    L                   L  +  A   S 
Sbjct: 243 EHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSK 302

Query: 196 FVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCN 250
             V  ++L+ K D +                     +          LA       R  +
Sbjct: 303 QEV-LQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMK------LAPSAPVRTRSRS 355

Query: 251 GQSPLHLA 258
                 ++
Sbjct: 356 RARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 82.6 bits (205), Expect = 2e-17
 Identities = 29/155 (18%), Positives = 50/155 (32%), Gaps = 30/155 (19%)

Query: 210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKL 264
               D  +   +H AA  G  +   RL      +        ++  G + LHLA + G +
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRL------IETGVSPTIQNRFGCTALHLACKFGCV 66

Query: 265 SLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTP 324
              K L  S  +         +  +HLA      ++VV +         +  +   G  P
Sbjct: 67  DTAKYLA-SVGEVHS--LWHGQKPIHLAVMANKTDLVVAL---------VEGAKERGQMP 114

Query: 325 LHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
             L    +   +         +     + K QTAL
Sbjct: 115 ESLLNECDEREVN-------EIGSHVKHCKGQTAL 142

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.1 bits (131), Expect = 4e-08
 Identities = 13/111 (11%), Positives = 32/111 (28%), Gaps = 11/111 (9%)

Query: 12  LRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHK 71
           L++ D   ++     NG  +L         +  AA    + V+ ++L+ + D V    + 
Sbjct: 264 LQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL-QLLQEKLDEVVRSLNT 322

Query: 72  SETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNA 122
                    +     V ++ + P                +          +
Sbjct: 323 GAGGAVKRKKKAAPAVKRMKLAPSAPVR----------TRSRSRARSSAVS 363

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  129 bits (326), Expect = 1e-33
 Identities = 54/327 (16%), Positives = 102/327 (31%), Gaps = 40/327 (12%)

Query: 35  SQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRP 94
                         G+  +  +       + +    +S   +H  A AG++ + +   R 
Sbjct: 58  QHYSLYPNPQGYGNGNDFLG-DFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITR- 114

Query: 95  HGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYI-------NK 147
                      +I         T LH        + +  +I  + +            + 
Sbjct: 115 ESV--------NI--IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC 164

Query: 148 AGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKR 207
              +PL LA+ A    +   ++K           ++ + LH A        M   +    
Sbjct: 165 DENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAAN-RDFGMMVYMLNST 222

Query: 208 DL---INVLDKRDRNPLHYAAALGHFEIACR----------LSDEDDTLAYERDCNGQSP 254
            L   I  LD+     L   A     +              +  +           G++ 
Sbjct: 223 KLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA 282

Query: 255 LHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDM 313
           LH A++   + ++K L+     + +  D+  +  + LAAQ G   VV   I +   +   
Sbjct: 283 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV--- 339

Query: 314 INSSDLEGNTPLHLAAINNHFNIVLIL 340
             + D   +T   LA  NNH NIV I 
Sbjct: 340 -EAVDATDHTARQLAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  122 bits (308), Expect = 3e-31
 Identities = 57/342 (16%), Positives = 105/342 (30%), Gaps = 52/342 (15%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN 99
            +L  A+  G+               +   H S  P       GN  +       +    
Sbjct: 39  HSLLEASYDGYIKRQ----------RNELQHYSLYPNPQGYGNGNDFLGDFNHT-NLQIP 87

Query: 100 NTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKA--GQSPLSLAI 157
                     + + E    LH         +   + R+       I      ++ L    
Sbjct: 88  T---------EPEPESPIKLHTEAAGSY-AITEPITRESVN----IIDPRHNRTVLHWIA 133

Query: 158 DAGLTHIACCIIKEKLSVLDHRGPN-------DLTLLHIAIIKSNFVVMAKILEAKRDLI 210
                  +  +I  +       G +       + T L +A+  +    +   L       
Sbjct: 134 SNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAV-LARRRRLVAYLMKAGADP 192

Query: 211 NVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLA--YERDCNGQSPLHLASENGKLSLLK 268
            + +K +R+ LH AAA   F +   + +         E D NG + L + + N     + 
Sbjct: 193 TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA 252

Query: 269 --RLL--------HSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSS 317
             +LL        +      +    K R  LH AAQ  +  +V   +    E     +  
Sbjct: 253 SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG---EKGSNKDKQ 309

Query: 318 DLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
           D +G TP+ LAA      +V+ L +    ++ A +    TA 
Sbjct: 310 DEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTAR 350

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 85.8 bits (213), Expect = 2e-18
 Identities = 39/260 (15%), Positives = 79/260 (30%), Gaps = 42/260 (16%)

Query: 37  NRDTALHIAARFGHKNVV-MEILELRPDLVSV------ENHKSETPMHVAARAGNFGVAK 89
           +  T LH  A           I+    + ++        +    TP+ +A  A    +  
Sbjct: 124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVA 183

Query: 90  IFMRPHG-NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPEL--ICYIN 146
             M+  G +              ++   + LH A    D  M   M+        I  ++
Sbjct: 184 YLMK-AGADPT----------IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD 232

Query: 147 KAGQSPLSLAIDAG---LTHIACCIIKEKLSVLDHRGP-------NDLTLLHIAIIKSNF 196
           + G + L +            A  ++++   V                T LH A    + 
Sbjct: 233 RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV-SN 291

Query: 197 VVMAKILEAKRDL-INVLDKRDRNPLHYAAALGHFEIACRL----SDEDDTLAYERDCNG 251
           + + K L  ++    +  D+  + P+  AA  G  E+   L    +  +       D   
Sbjct: 292 MPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE-----AVDATD 346

Query: 252 QSPLHLASENGKLSLLKRLL 271
            +   LA  N   +++    
Sbjct: 347 HTARQLAQANNHHNIVDIFD 366

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  124 bits (315), Expect = 8e-33
 Identities = 50/312 (16%), Positives = 88/312 (28%), Gaps = 54/312 (17%)

Query: 36  QNRDTALHIAARFGHKNVVMEILELRPDLVSV--ENHKSETPMHVAARAGNFGVAKIFMR 93
           ++ DTALH+A    H+  +  +L        +  +N   +T +H+AA  G     +    
Sbjct: 7   EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66

Query: 94  PHG-NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSP 152
             G                +  G+T LH A R      A  +++  P       +     
Sbjct: 67  -AGAGVL----------VAERGGHTALHLACRVRAHTCACVLLQPRPS----HPRDAS-- 109

Query: 153 LSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINV 212
                D  LT              D           +    +         E  R  +  
Sbjct: 110 -----DTYLTQSQ-----------DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA 153

Query: 213 LDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCN-GQSPLHLASENGKLSL 266
            +     PLH A      E+   L              + +   G++PLHLA E    S+
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLL------RDAGADLNKPEPTCGRTPLHLAVEAQAASV 207

Query: 267 LKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVF-ISKLPEIEDMINSSDLEGNTPL 325
           L+ LL              R  L  A    +  +     +              +  +P 
Sbjct: 208 LELLL-KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP----EPEDGGDKLSPC 262

Query: 326 HLAAINNHFNIV 337
             +  ++  +  
Sbjct: 263 SSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 98.0 bits (245), Expect = 3e-23
 Identities = 45/232 (19%), Positives = 81/232 (34%), Gaps = 22/232 (9%)

Query: 144 YINKAGQSPLSLAIDAGLTHIACCIIKE--KLSVLDHRGPNDLTLLHIAIIKSNFVVMAK 201
           Y+ + G + L LA+          ++        LD +     T LH+A I        +
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL-GEASTVE 62

Query: 202 ILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRL---------SDEDDTLAYERDCNGQ 252
            L A    + V ++     LH A  +     AC L            D  L   +DC   
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 253 S---PLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLP 308
           +   P  + S+    +  +     +   +E  +      LH+A  +  A +V +      
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182

Query: 309 EIEDMINSSDLE-GNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
           ++    N  +   G TPLHLA      +++ +L +    +  A     +T L
Sbjct: 183 DL----NKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPL 229

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 91.5 bits (228), Expect = 6e-21
 Identities = 37/206 (17%), Positives = 68/206 (33%), Gaps = 31/206 (15%)

Query: 175 VLDHRGPNDLTLLHIAIIKSNFVVMAKIL---EAKRDLINVLDKRDRNPLHYAAALGHFE 231
           V  +   +  T LH+A+I          L    A  + +++ +   +  LH AA LG   
Sbjct: 1   VFGYVTEDGDTALHLAVIH-QHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS 59

Query: 232 IACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLKRLLH------------SY 274
              +L       A        +  G + LHLA      +    LL               
Sbjct: 60  TVEKL------YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYL 113

Query: 275 PDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHF 334
             S +     +     + +Q    N         +    + + + +G+TPLH+A I+   
Sbjct: 114 TQSQDCTPDTSHAPAAVDSQPNPENEEEPR--DEDWRLQLEAENYDGHTPLHVAVIHKDA 171

Query: 335 NIVLILARNMRVNIRATNEKK-QTAL 359
            +V +L      ++        +T L
Sbjct: 172 EMVRLLRDA-GADLNKPEPTCGRTPL 196

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 70.3 bits (173), Expect = 1e-13
 Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 23/158 (14%)

Query: 250 NGQSPLHLASENGKLSLLKRLLHS--YPDSIEFLDKKNRNILHLAAQNGHANVV-VFISK 306
           +G + LHLA  +     L  LL      + ++  +   +  LHLAA  G A+ V    + 
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67

Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSL 366
              +      ++  G+T LHLA          +L     +  R ++ +  +   + Q   
Sbjct: 68  GAGV----LVAERGGHTALHLACRVRAHTCACVL-----LQPRPSHPRDASDTYLTQ--- 115

Query: 367 HQNDILEGHGGSASGTGTTTTDLIAGPKNEDMAQNLLV 404
                          T      + + P  E+  +    
Sbjct: 116 --------SQDCTPDTSHAPAAVDSQPNPENEEEPRDE 145

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  122 bits (309), Expect = 2e-31
 Identities = 62/314 (19%), Positives = 111/314 (35%), Gaps = 54/314 (17%)

Query: 36  QNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPH 95
             + T LH+AA +    +V  +L+   D V  ++     P+H A   G++ V ++ ++ H
Sbjct: 56  GRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLK-H 113

Query: 96  G-NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRK--DPELICYINKAGQSP 152
           G   N            D    TPLH A  K   ++   ++    DP L   +N  G+S 
Sbjct: 114 GACVN----------AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL---VNCHGKSA 160

Query: 153 LSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINV 212
           + +A    L        K              +LL  A  +++   + K L  +      
Sbjct: 161 VDMAPTPELRERLTYEFKGH------------SLLQAA-READLAKVKKTLALEIINFKQ 207

Query: 213 LDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY---------ERDCNGQSPLHLASENGK 263
             +     LH A A  H                         E++ +  +PLH+A+E   
Sbjct: 208 -PQSHETALHCAVASLHP-------KRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAH 259

Query: 264 LSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGN 322
             +++ L   +   +  LD   +  LH AA  GH     + +S   +     +   L+G 
Sbjct: 260 NDVMEVLH-KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD----PSIISLQGF 314

Query: 323 TPLHLAAINNHFNI 336
           T   +        +
Sbjct: 315 TAAQMGNEAVQQIL 328

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  116 bits (292), Expect = 5e-29
 Identities = 61/348 (17%), Positives = 114/348 (32%), Gaps = 78/348 (22%)

Query: 37  NRDTALHIAARFGHKNVVMEIL-ELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPH 95
            +   L  AAR G++  +M +L  L  +     + +  TP+H+AA      + ++ +  H
Sbjct: 23  YKKDELLEAARSGNEEKLMALLTPLNVN-CHASDGRKSTPLHLAAGYNRVRIVQLLL-QH 80

Query: 96  G-NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLS 154
           G + +           +D+ G  PLHNA                                
Sbjct: 81  GADVH----------AKDKGGLVPLHNACSY----------------------------- 101

Query: 155 LAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLD 214
                G   +   ++K    V +       T LH A  K N V +  +L +      +++
Sbjct: 102 -----GHYEVTELLLKHGACV-NAMDLWQFTPLHEAASK-NRVEVCSLLLSHGADPTLVN 154

Query: 215 KRDRNPLHYAAALGHFEIACRLSDEDDTLAY--------------------ERDCNGQSP 254
              ++ +  A      E           L                      ++  + ++ 
Sbjct: 155 CHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETA 214

Query: 255 LHLASENGKLSLLK--RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIE 311
           LH A  +      +   LL     ++   +K     LH+AA+  H +V+ V      ++ 
Sbjct: 215 LHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM- 273

Query: 312 DMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
              N+ D  G T LH AA+  H     +L      +    + +  TA 
Sbjct: 274 ---NALDSLGQTALHRAALAGHLQTCRLLLSY-GSDPSIISLQGFTAA 317

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 93.3 bits (233), Expect = 4e-21
 Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 7/153 (4%)

Query: 210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKR 269
             +  +  ++ L  AA  G+ E    L    +   +  D    +PLHLA+   ++ +++ 
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQL 76

Query: 270 LLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLA 328
           LL  +   +   DK     LH A   GH  V  + +     +    N+ DL   TPLH A
Sbjct: 77  LL-QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV----NAMDLWQFTPLHEA 131

Query: 329 AINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
           A  N   +  +L  +   +    N   ++A+ +
Sbjct: 132 ASKNRVEVCSLLLSH-GADPTLVNCHGKSAVDM 163

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 86.4 bits (215), Expect = 8e-19
 Identities = 49/306 (16%), Positives = 88/306 (28%), Gaps = 82/306 (26%)

Query: 34  MSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMR 93
           M   + T LH AA      V   +L    D  ++ N   ++ + +A              
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTY--- 175

Query: 94  PHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPL 153
                             + +G++ L  A                               
Sbjct: 176 ------------------EFKGHSLLQAAREA---------------------------- 189

Query: 154 SLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIK--SNFVVMAKILEAKRDLIN 211
                  L  +   +  E   +   +  +  T LH A+         +A++L  K   +N
Sbjct: 190 ------DLAKVKKTLALE--IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN 241

Query: 212 VLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSL 266
             +K    PLH AA   H ++   L        +       D  GQ+ LH A+  G L  
Sbjct: 242 EKNKDFMTPLHVAAERAHNDVMEVL------HKHGAKMNALDSLGQTALHRAALAGHLQT 295

Query: 267 LKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLH 326
            + LL    D    +  +      +  +     V   +S+       + +SD   +  L 
Sbjct: 296 CRLLLSYGSD-PSIISLQGFTAAQMGNE----AVQQILSESTP----MRTSD--VDYRLL 344

Query: 327 LAAINN 332
            A+   
Sbjct: 345 EASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 59.8 bits (146), Expect = 6e-10
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 21/112 (18%)

Query: 250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVV--FISKL 307
            G+S L LA  + K                   +  ++ L  AA++G+   ++       
Sbjct: 3   FGKSALDLADPSAK--------------AVLTGEYKKDELLEAARSGNEEKLMALLTPLN 48

Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
                  ++SD   +TPLHLAA  N   IV +L ++   ++ A ++     L
Sbjct: 49  VN----CHASDGRKSTPLHLAAGYNRVRIVQLLLQH-GADVHAKDKGGLVPL 95

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  114 bits (289), Expect = 3e-29
 Identities = 58/260 (22%), Positives = 91/260 (35%), Gaps = 16/260 (6%)

Query: 112 DEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKE 171
             E N  L  AV+  D  +   ++     +     + G +PL  A+      I   +++ 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 172 KLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFE 231
                  R  N  T   +A I    V + K+  +K   +N  D         AA  G  +
Sbjct: 62  GADP-VLRKKNGATPFLLAAIA-GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 232 IACRL---------SDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLD 282
               L           +           G + L  A+E G + +LK LL      +   D
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179

Query: 283 KKNRNILHLAAQNGHANVVVFISKLPEIE---DMINSSDLEGNTPLHLAAINNHFNIVLI 339
              RN L  A  +   + V  I+ L  ++   D +N     G TPL LA    H  +V  
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHL-LLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQR 237

Query: 340 LARNMRVNIRATNEKKQTAL 359
           L     + I  T+   +TAL
Sbjct: 238 LLEQEHIEINDTDSDGKTAL 257

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  114 bits (288), Expect = 5e-29
 Identities = 63/310 (20%), Positives = 108/310 (34%), Gaps = 51/310 (16%)

Query: 39  DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG-N 97
           +  L  A +    ++V ++LE   ++   E     TP+H A +     + ++ +R HG +
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR-HGAD 64

Query: 98  GNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKA---GQSPLS 154
                        + + G TP   A      K+    + K  +    +N+    G +   
Sbjct: 65  PV----------LRKKNGATPFLLAAIAGSVKLLKLFLSKGAD----VNECDFYGFTAFM 110

Query: 155 LAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLD 214
            A   G       + K        RG N               V  +     ++    L 
Sbjct: 111 EAAVYGKVKALKFLYK--------RGAN---------------VNLR--RKTKEDQERLR 145

Query: 215 KRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLK---RLL 271
           K     L  AA  GH E+   L DE        D  G++ L  A  +   S ++    LL
Sbjct: 146 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 205

Query: 272 HSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAI 330
             +   +    ++ +  L LA +  H  +V   + +   IE  IN +D +G T L LA  
Sbjct: 206 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ-EHIE--INDTDSDGKTALLLAVE 262

Query: 331 NNHFNIVLIL 340
                I  +L
Sbjct: 263 LKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 81.7 bits (203), Expect = 1e-17
 Identities = 43/236 (18%), Positives = 78/236 (33%), Gaps = 34/236 (14%)

Query: 37  NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
           N  T   +AA  G   ++   L    D V+  +    T    AA  G     K   +  G
Sbjct: 71  NGATPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYK-RG 128

Query: 97  -NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSL 155
            N N      +   +  + G T L +A  K   ++   ++ +    +   +  G++ L  
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188

Query: 156 AIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDK 215
           A+ +        I    L      G +                           +NV  +
Sbjct: 189 ALLSSDDSDVEAITHLLLD----HGAD---------------------------VNVRGE 217

Query: 216 RDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLL 271
           R + PL  A    H  +  RL +++     + D +G++ L LA E     + + L 
Sbjct: 218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 18/150 (12%)

Query: 27  NGNGILDMSQNRDTALHIAARFGHKNVVMEIL--ELRPDLVSVENHKSETPMHVAARAGN 84
                  + +   TAL  AA  GH  V+ +IL  E+  D V+  ++     +  A  + +
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVL-KILLDEMGAD-VNACDNMGRNALIHALLSSD 194

Query: 85  FGVAKIFMRP---HG-NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPE 140
               +        HG + N           + E G TPL  AV K    +   ++ ++  
Sbjct: 195 DSDVEAITHLLLDHGADVN----------VRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244

Query: 141 LICYINKAGQSPLSLAIDAGLTHIACCIIK 170
            I   +  G++ L LA++  L  IA  + K
Sbjct: 245 EINDTDSDGKTALLLAVELKLKKIAELLCK 274

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  107 bits (271), Expect = 1e-26
 Identities = 52/321 (16%), Positives = 98/321 (30%), Gaps = 37/321 (11%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG-NG 98
               +    G +  + E   ++     V+       +  A  +G+       +   G + 
Sbjct: 10  RNEQLKRWIGSETDL-EPPVVKRKKTKVKFDDGAVFLA-ACSSGDTEEVLRLLE-RGADI 66

Query: 99  NNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKA---GQSPLSL 155
           N            + +G T LH A    +  M   ++         IN+    G  PL  
Sbjct: 67  N----------YANVDGLTALHQACIDDNVDMVKFLVENGAN----INQPDNEGWIPLHA 112

Query: 156 AIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDK 215
           A   G   IA  +I +   V         T L IA  ++         E  ++ +N    
Sbjct: 113 AASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAM-------EELLQNEVNRQGV 164

Query: 216 RDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYP 275
                      +   +    L+            +G + LH+A+  G   +LK L+    
Sbjct: 165 DIEAARKEEERIMLRDARQWLNSGHINDV-RHAKSGGTALHVAAAKGYTEVLKLLI-QAR 222

Query: 276 DSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHF 334
             +   D      LH AA  G      + +  L ++     + +  G T   +A  +   
Sbjct: 223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM----EAVNKVGQTAFDVADEDILG 278

Query: 335 NIVLILARNMRVNIRATNEKK 355
            +  +  +   +      EKK
Sbjct: 279 YLEELQKKQ-NLLHSEKREKK 298

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 93.3 bits (233), Expect = 2e-21
 Identities = 46/263 (17%), Positives = 86/263 (32%), Gaps = 38/263 (14%)

Query: 108 LRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKA--GQSPLSLAIDAGLTHIA 165
           ++  D +                    + K  +            +    A  +G T   
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKK----TKVKFDDGAVFLAACSSGDTEEV 56

Query: 166 CCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAA 225
             +++    + ++   + LT LH A I  + V M K L      IN  D     PLH AA
Sbjct: 57  LRLLERGADI-NYANVDGLTALHQACID-DNVDMVKFLVENGANINQPDNEGWIPLHAAA 114

Query: 226 ALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEF 280
           + G+ +IA  L      ++        +  G +PL +A E     LL+  +         
Sbjct: 115 SCGYLDIAEYL------ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV--------- 159

Query: 281 LDKKNRNI---LHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNI 336
            +++  +I        +    +      S               G T LH+AA   +  +
Sbjct: 160 -NRQGVDIEAARKEEERIMLRDARQWLNSGHIND----VRHAKSGGTALHVAAAKGYTEV 214

Query: 337 VLILARNMRVNIRATNEKKQTAL 359
           + +L +  R ++   +    T L
Sbjct: 215 LKLLIQA-RYDVNIKDYDGWTPL 236

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 83.7 bits (208), Expect = 4e-18
 Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 9/153 (5%)

Query: 210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKR 269
           + + D + +        +G          +      +   +  +    A  +G    + R
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKT--KVKFDDGAVFLAACSSGDTEEVLR 58

Query: 270 LLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLA 328
           LL      I + +      LH A  + + ++V   +     I    N  D EG  PLH A
Sbjct: 59  LL-ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI----NQPDNEGWIPLHAA 113

Query: 329 AINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
           A   + +I   L      ++ A N +  T L I
Sbjct: 114 ASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDI 145

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  106 bits (267), Expect = 2e-26
 Identities = 49/249 (19%), Positives = 88/249 (35%), Gaps = 29/249 (11%)

Query: 107 ILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKA---GQSPLSLAIDAGLTH 163
           +  + DE+G+TPLH AV + +      ++    +    ++      Q+PL LA+   L  
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 164 IACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKIL-----EAKRDLINVLDKRDR 218
           +   ++    S       +  T  H+A          + L         D +   +    
Sbjct: 61  VVRLLVTAGASP-MALDRHGQTAAHLACEH-RSPTCLRALLDSAAPGTLD-LEARNYDGL 117

Query: 219 NPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCN-GQSPLHLASENGKLSLLKRLLH 272
             LH A      E    L      L         D   G+SPL  A EN  LS+++ LL 
Sbjct: 118 TALHVAVNTECQETVQLL------LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL- 170

Query: 273 SYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAIN 331
            +  ++        + LH A+  G   +V   +    +     +  +   +TPL +A   
Sbjct: 171 QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS----SLKNCHNDTPLMVARSR 226

Query: 332 NHFNIVLIL 340
              +I+   
Sbjct: 227 RVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 97.1 bits (243), Expect = 3e-23
 Identities = 41/248 (16%), Positives = 84/248 (33%), Gaps = 32/248 (12%)

Query: 37  NRDTALHIAARFGHKNVVMEILELRPDL---VSVENHKSETPMHVAARAGNFGVAKIFMR 93
           + DT LHIA   G+   V  ++ L       + + N+  +TP+H+A       V ++ + 
Sbjct: 8   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67

Query: 94  PHG-NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYIN---KAG 149
             G +              D  G T  H A           ++         +      G
Sbjct: 68  -AGASPM----------ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116

Query: 150 QSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPND-LTLLHIAIIKSNFVVMAKILEAKRD 208
            + L +A++         +++    + D        + L  A+   N + M ++L     
Sbjct: 117 LTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVEN-NSLSMVQLLLQHGA 174

Query: 209 LINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGK 263
            +N       + LH A+  G   +   L      +        ++C+  +PL +A     
Sbjct: 175 NVNAQMYSGSSALHSASGRGLLPLVRTL------VRSGADSSLKNCHNDTPLMVARSRRV 228

Query: 264 LSLLKRLL 271
           + +L+   
Sbjct: 229 IDILRGKA 236

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 89.8 bits (224), Expect = 1e-20
 Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 7/156 (4%)

Query: 209 LINVLDKRDRNPLHYAAALGHFEIACRL-SDEDDTLAY--ERDCNGQSPLHLASENGKLS 265
           +    D+    PLH A   G+     RL +            +   Q+PLHLA      S
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 266 LLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTP 324
           +++ L+ +   S   LD+  +   HLA ++     +   +         + + + +G T 
Sbjct: 61  VVRLLV-TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119

Query: 325 LHLAAINNHFNIVLILARNMRVNIRATNEKK-QTAL 359
           LH+A        V +L      +I A + K  ++ L
Sbjct: 120 LHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPL 154

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 50.9 bits (123), Expect = 2e-07
 Identities = 14/92 (15%), Positives = 37/92 (40%), Gaps = 13/92 (14%)

Query: 35  SQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRP 94
            ++  + L  A      ++V  +L+   + V+ + +   + +H A+  G   + +  +R 
Sbjct: 147 IKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVR- 204

Query: 95  HG-NGNNTGTFDDILRKQDEEGNTPLHNAVRK 125
            G + +           ++   +TPL  A  +
Sbjct: 205 SGADSS----------LKNCHNDTPLMVARSR 226

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  105 bits (266), Expect = 2e-26
 Identities = 50/237 (21%), Positives = 99/237 (41%), Gaps = 19/237 (8%)

Query: 110 KQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCII 169
            + +   +PLH A       +   +++     I   ++  ++PL  A +         +I
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLI 64

Query: 170 KEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGH 229
           K    V D +     T LH+A  K ++ V+  +L   +  +N  D     P+ +A    H
Sbjct: 65  KAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123

Query: 230 FEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKK 284
            ++   L      L+       RD      LH A+ +G + + + LL +  D +  ++  
Sbjct: 124 VDLVKLL------LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIH 176

Query: 285 NRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
             + LH+AA+    + V +F+S+  ++       + EG TPL  A++N+     L +
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSDV----TLKNKEGETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 92.1 bits (230), Expect = 2e-21
 Identities = 48/247 (19%), Positives = 102/247 (41%), Gaps = 24/247 (9%)

Query: 36  QNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPH 95
           QN+ + LH AA  GH ++   +++   + +   +    TP+  AA   +    K  ++  
Sbjct: 9   QNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIK-A 66

Query: 96  GNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSL 155
           G   +          +D EG+T LH A +K   ++   ++      +   +  G +P+  
Sbjct: 67  GALVD---------PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIW 117

Query: 156 AIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDK 215
           A +     +   ++ +   + + R   +   LH A      V +A+IL A +  ++ ++ 
Sbjct: 118 ATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFS-GCVDIAEILLAAKCDLHAVNI 175

Query: 216 RDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLKRL 270
              +PLH AA    ++           L+       ++  G++PL  AS N ++    ++
Sbjct: 176 HGDSPLHIAARENRYDCVVLF------LSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229

Query: 271 LHSYPDS 277
             +  DS
Sbjct: 230 SKALQDS 236

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 90.6 bits (226), Expect = 6e-21
 Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 17/156 (10%)

Query: 210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKL 264
             +  +  R+PLH AA  GH +I   L      +           + ++PL  A+EN  L
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHML------VQAGANIDTCSEDQRTPLMEAAENNHL 57

Query: 265 SLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNT 323
             +K L+ +    ++  D +    LHLAA+ GH  VV   +S      D +N  D  G T
Sbjct: 58  EAVKYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSN--GQMD-VNCQDDGGWT 113

Query: 324 PLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
           P+  A    H ++V +L      +I   + ++   L
Sbjct: 114 PMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICL 148

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  100 bits (252), Expect = 1e-24
 Identities = 48/227 (21%), Positives = 86/227 (37%), Gaps = 17/227 (7%)

Query: 145 INKAGQSPLSLAIDAGLTHIACCIIKEKLSV---LDHRGPNDLTLLHIAIIKSNFVVMAK 201
           + + G S L LAI      +   +I++       L+ +     T LH+A+I  N   +A+
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT-NQPEIAE 62

Query: 202 ILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRL-----SDEDDTLAYERDCNGQSPLH 256
            L        + D R   PLH A   G       L     +    ++    + NG + LH
Sbjct: 63  ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122

Query: 257 LASENGKLSLLKRLLHSYPDSIEFLDKKN-RNILHLAAQNGHANVVVF-ISKLPEIEDMI 314
           LAS +G L +++ L+    D +   +  N R  LHLA    + ++V   +    ++    
Sbjct: 123 LASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV---- 177

Query: 315 NSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
           N    +G +P  L        I   L +   +       + +   + 
Sbjct: 178 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLT-LENLQMLPESEDEESY 223

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 97.2 bits (243), Expect = 3e-23
 Identities = 45/275 (16%), Positives = 92/275 (33%), Gaps = 58/275 (21%)

Query: 37  NRDTALHIAARFGHKNVVMEILEL---RPDLVSVENHKSETPMHVAARAGNFGVAKIFMR 93
           + D+ LH+A     K + ME++         ++ +N+  +TP+H+A       +A+  + 
Sbjct: 7   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66

Query: 94  PHG-NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSP 152
             G +             +D  GNTPLH A  +               ++          
Sbjct: 67  -AGCDPE----------LRDFRGNTPLHLACEQGCLASV--------GVL---------- 97

Query: 153 LSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINV 212
                 +  T     I+K      ++ G    T LH+A I   ++ + ++L +    +N 
Sbjct: 98  ----TQSCTTPHLHSILKAT----NYNG---HTCLHLASIH-GYLGIVELLVSLGADVNA 145

Query: 213 LDKRD-RNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSL 266
            +  + R  LH A  L + ++   L      L            G SP  L        +
Sbjct: 146 QEPCNGRTALHLAVDLQNPDLVSLL------LKCGADVNRVTYQGYSPYQLTWGRPSTRI 199

Query: 267 LKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV 301
            ++L          +  ++ +      ++      
Sbjct: 200 QQQLG-QLTLENLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 11/89 (12%)

Query: 36  QNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPH 95
            N  TALH+A    + ++V  +L+   D V+   ++  +P  +     +  + +   +  
Sbjct: 149 CNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQ-L 206

Query: 96  GNGNNTGTFDDILRKQDEEGNTPLHNAVR 124
                     + L+    E          
Sbjct: 207 T--------LENLQM-LPESEDEESYDTE 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 99.8 bits (250), Expect = 3e-24
 Identities = 39/185 (21%), Positives = 68/185 (36%), Gaps = 10/185 (5%)

Query: 182 NDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRN---PLHYAAALGHFEIACRL-S 237
           +    LH ++       +   L +K + +N+ D  D +   P H A ++G+ E+   L  
Sbjct: 35  DGRIPLHWSVSF-QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93

Query: 238 DEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGH 297
                   +    G + LHLA       + + L+     S+   DK N+  LH AA  G 
Sbjct: 94  RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI-ENGASVRIKDKFNQIPLHRAASVGS 152

Query: 298 ANVVVF-ISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQ 356
             ++             +N  D +G TPL  A    H +  ++L           + K  
Sbjct: 153 LKLIELLCGLGKSA---VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA 209

Query: 357 TALAI 361
            A  +
Sbjct: 210 KAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 96.0 bits (240), Expect = 6e-23
 Identities = 45/259 (17%), Positives = 86/259 (33%), Gaps = 41/259 (15%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN 99
             LH A        V E+L  +P L+  ++     P+H +       +    +       
Sbjct: 4   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL---SKME 60

Query: 100 NTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDA 159
           N    D      D+ G TP H A    + ++         + +                 
Sbjct: 61  NVNLDD----YPDDSGWTPFHIACSVGNLEVV--------KSL----------------- 91

Query: 160 GLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRN 219
                    + +      ++G   +T LH+A+ K  +  +++ L      + + DK ++ 
Sbjct: 92  -YDRPLKPDLNKI----TNQG---VTCLHLAVGK-KWFEVSQFLIENGASVRIKDKFNQI 142

Query: 220 PLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIE 279
           PLH AA++G  ++   L     +    +D  G +PL  A   G       L+  Y    +
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202

Query: 280 FLDKKNRNILHLAAQNGHA 298
            +D K      +A      
Sbjct: 203 LVDNKGAKAEDVALNEQVK 221

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 91.7 bits (229), Expect = 2e-21
 Identities = 47/271 (17%), Positives = 88/271 (32%), Gaps = 63/271 (23%)

Query: 73  ETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAF 132
             P+H A     F   +  +    +            ++D++G  PLH +V     ++  
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLL---------QKDQDGRIPLHWSVSFQAHEITS 53

Query: 133 TMIRK--DPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIA 190
            ++ K  +  L  Y + +G +P  +A   G   +   +    L       P+        
Sbjct: 54  FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL------KPD-------- 99

Query: 191 IIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY----- 245
                              +N +  +    LH A     FE++  L      +       
Sbjct: 100 -------------------LNKITNQGVTCLHLAVGKKWFEVSQFL------IENGASVR 134

Query: 246 ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFIS 305
            +D   Q PLH A+  G L L++ L      ++ + DK+    L  A   GH +  V + 
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL- 193

Query: 306 KLPEIEDM---INSSDLEGNTPLHLAAINNH 333
               +E      +  D +G     +A     
Sbjct: 194 ----VEKYGAEYDLVDNKGAKAEDVALNEQV 220

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 75.9 bits (188), Expect = 5e-16
 Identities = 44/235 (18%), Positives = 76/235 (32%), Gaps = 49/235 (20%)

Query: 37  NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSE---TPMHVAARAGNFGVAKIFMR 93
           +    LH +  F    +   +L    + V+++++  +   TP H+A   GN  V K    
Sbjct: 35  DGRIPLHWSVSFQAHEITSFLLSKMEN-VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93

Query: 94  PHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPL 153
                 +       L K   +G T LH AV K   +++  +I      +   +K  Q PL
Sbjct: 94  -RPLKPD-------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPL 144

Query: 154 SLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKIL-EAKRDLINV 212
                    H A                               + + ++L    +  +N 
Sbjct: 145 ---------HRAA--------------------------SVGSLKLIELLCGLGKSAVNW 169

Query: 213 LDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLL 267
            DK+   PL +A A GH + A  L ++        D  G     +A         
Sbjct: 170 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 224

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  100 bits (251), Expect = 3e-24
 Identities = 46/251 (18%), Positives = 84/251 (33%), Gaps = 33/251 (13%)

Query: 110 KQDEEGNTPLHNAVRKCDGKMAFTMIRKD--PELICY-----------INKAGQSPLSLA 156
            +  +G TPL  A     G        ++  P +I              ++ G++ L LA
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64

Query: 157 IDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKIL-EAKRDLINVLDK 215
                +  A  +++      + +     T LH A+   +   + +IL   +   ++    
Sbjct: 65  ARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSA-DAQGVFQILIRNRATDLDARMH 122

Query: 216 RDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLKRL 270
               PL  AA L    +   L      +         D  G+S LH A+    +     L
Sbjct: 123 DGTTPLILAARLAVEGMLEDL------INSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176

Query: 271 LHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAA 329
           L     + +  + +    L LAA+ G      V +          + +D     P  +A 
Sbjct: 177 L-KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR----DITDHMDRLPRDIAQ 231

Query: 330 INNHFNIVLIL 340
              H +IV +L
Sbjct: 232 ERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 91.4 bits (228), Expect = 4e-21
 Identities = 45/202 (22%), Positives = 76/202 (37%), Gaps = 30/202 (14%)

Query: 177 DHRGPNDLTLLHIAIIKSNFVVMAKILEAKR-------------DLINVLDKRDRNPLHY 223
           + RGP+  T L IA      +      E +               L N  D+     LH 
Sbjct: 4   NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHL 63

Query: 224 AAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSI 278
           AA     + A RL      L        +D  G++PLH A       + + L+ +    +
Sbjct: 64  AARYSRSDAAKRL------LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 117

Query: 279 EFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIV 337
           +         L LAA+     ++   I+   ++    N+ D  G + LH AA  N+ +  
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHADV----NAVDDLGKSALHWAAAVNNVDAA 173

Query: 338 LILARNMRVNIRATNEKKQTAL 359
           ++L +N   N    N +++T L
Sbjct: 174 VVLLKN-GANKDMQNNREETPL 194

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 83.3 bits (207), Expect = 3e-18
 Identities = 57/271 (21%), Positives = 88/271 (32%), Gaps = 55/271 (20%)

Query: 40  TALHIAARFGHKNVVM---------EILELRPDLVS----VENHKS---ETPMHVAARAG 83
           T L IA+  G                ++      +     + N      ET +H+AAR  
Sbjct: 12  TPLMIASCSGGGLETGNSEEEEDAPAVISD---FIYQGASLHNQTDRTGETALHLAARYS 68

Query: 84  NFGVAKIFMRPHG-NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELI 142
               AK  +     + N           QD  G TPLH AV      +   +IR     +
Sbjct: 69  RSDAAKRLLE-ASADAN----------IQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 117

Query: 143 CYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKI 202
                 G +PL LA    +  +   +I     V +       + LH A    N V  A +
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAV-NNVDAAVV 175

Query: 203 LEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHL 257
           L       ++ + R+  PL  AA  G +E A  L      L +       D   + P  +
Sbjct: 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVL------LDHFANRDITDHMDRLPRDI 229

Query: 258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNI 288
           A E               D +  LD ++ + 
Sbjct: 230 AQERMHH-----------DIVRLLDLEHHHH 249

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 43.2 bits (103), Expect = 8e-05
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN 99
           T L +AAR G       +L+   +   + +H    P  +A    +  + ++    H + +
Sbjct: 192 TPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

Query: 100 N 100
           +
Sbjct: 251 H 251

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 99.6 bits (249), Expect = 3e-24
 Identities = 36/258 (13%), Positives = 74/258 (28%), Gaps = 58/258 (22%)

Query: 108 LRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACC 167
             K  + G   +  A+   + +    +  ++ ++I YI     +        G       
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDII-YITDMSDTNWWKGTSKG------- 56

Query: 168 IIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAAL 227
                                  +I SN              +    +   NPLH AA  
Sbjct: 57  --------------------RTGLIPSN-------------YVAEQAESIDNPLHEAAKR 83

Query: 228 GHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLD 282
           G+             L         D  G + L+ A   G   +++ L       +   +
Sbjct: 84  GNLSWLREC------LDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQN 137

Query: 283 KKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILA 341
           K     LH AA  G+A++V + ++K        +  ++E      +A      +++    
Sbjct: 138 KLGDTALHAAAWKGYADIVQLLLAKGAR----TDLRNIEKKLAFDMATNAACASLLKKK- 192

Query: 342 RNMRVNIRATNEKKQTAL 359
           +        +N +     
Sbjct: 193 QGTDAVRTLSNAEDYLDD 210

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 93.5 bits (233), Expect = 4e-22
 Identities = 40/268 (14%), Positives = 74/268 (27%), Gaps = 63/268 (23%)

Query: 35  SQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRP 94
            +     +  A          E+     D++ +    S+T        G  G+       
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYI-TDMSDTNWWKGTSKGRTGLIP----- 62

Query: 95  HGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLS 154
                      + + +Q E  + PLH A ++ +       +      +  ++KAG + L 
Sbjct: 63  ----------SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALY 111

Query: 155 LAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLD 214
            A   G   I      E L                                    +N  +
Sbjct: 112 WACHGGHKDIV-----EML--FTQPNIE---------------------------LNQQN 137

Query: 215 KRDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLKR 269
           K     LH AA  G+ +I   L      LA       R+   +    +A+     SLLK+
Sbjct: 138 KLGDTALHAAAWKGYADIVQLL------LAKGARTDLRNIEKKLAFDMATNAACASLLKK 191

Query: 270 LLHSYPDSIEFLDKKNRNILHLAAQNGH 297
              +        + ++      +    H
Sbjct: 192 KQGTDAV-RTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 37/257 (14%), Positives = 73/257 (28%), Gaps = 53/257 (20%)

Query: 8   LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSV 67
           +FRAL   +  T  E     G+ I+ ++   DT        G   ++          V+ 
Sbjct: 16  VFRALYTFEPRTPDELYIEEGD-IIYITDMSDTNWWKGTSKGRTGLIPSN------YVAE 68

Query: 68  ENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCD 127
           +    + P+H AA+ GN    +  +      N            D+ G+T L+ A     
Sbjct: 69  QAESIDNPLHEAAKRGNLSWLRECLDNRVGVN----------GLDKAGSTALYWACHGGH 118

Query: 128 GKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLL 187
             +   +  +    +   NK G + L         H A             +G       
Sbjct: 119 KDIVEMLFTQPNIELNQQNKLGDTAL---------HAAA-----------WKG------- 151

Query: 188 HIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYER 247
           +  I         ++L AK    ++ +   +     A       +  +     D +    
Sbjct: 152 YADI--------VQLLLAKGARTDLRNIEKKLAFDMATNAACASLL-KKKQGTDAVRTLS 202

Query: 248 DCNGQSPLHLASENGKL 264
           +         +      
Sbjct: 203 NAEDYLDDEDSDLEHHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 19/117 (16%)

Query: 253 SPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNI----------LHLAAQNGHANVVV 302
            P     + G++ + + L    P + + L  +  +I                 G   ++ 
Sbjct: 3   KPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI- 61

Query: 303 FISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
                    + +       + PLH AA   + + +     N RV +   ++   TAL
Sbjct: 62  -------PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTAL 110

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 97.6 bits (244), Expect = 5e-23
 Identities = 38/256 (14%), Positives = 78/256 (30%), Gaps = 25/256 (9%)

Query: 110 KQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYIN-KAGQSPLSLAIDAGLTHIACCI 168
           K D  G++  + A+   + ++  T++          N    + PL  A     T I   +
Sbjct: 26  KADVHGHSASYYAIADNNVRLVCTLLNAG----ALKNLLENEFPLHQAATLEDTKIVKIL 81

Query: 169 IKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRN-PLHYAAAL 227
           +   L           T L+ A+  S  +   K+   K   +    K       ++A  L
Sbjct: 82  LFSGLDD-SQFDDKGNTALYYAV-DSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML 139

Query: 228 GHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNR- 286
               I      E  +          S +H+  +NG + ++  LL  Y  S    +     
Sbjct: 140 NDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLL-DYMTSTNTNNSLLFI 196

Query: 287 NILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMR 345
             + LA  N    ++                 D+   +      + +   I  ++     
Sbjct: 197 PDIKLAIDNKDIEMLQALFKY-----------DINIYSANLENVLLDDAEIAKMIIEK-H 244

Query: 346 VNIRATNEKKQTALAI 361
           V  ++ +  K   +  
Sbjct: 245 VEYKSDSYTKDLDIVK 260

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 93.0 bits (232), Expect = 2e-21
 Identities = 50/324 (15%), Positives = 96/324 (29%), Gaps = 82/324 (25%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG-NG 98
           +A + A    +  +V  +L            ++E P+H AA   +  + KI +   G + 
Sbjct: 33  SASYYAIADNNVRLVCTLLNAGAL---KNLLENEFPLHQAATLEDTKIVKILLF-SGLDD 88

Query: 99  NNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAID 158
           +          + D++GNT L+ AV   + +     ++K+   + +  K G         
Sbjct: 89  S----------QFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWK------- 130

Query: 159 AGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDR 218
                                     T  + A++  N V +     ++            
Sbjct: 131 --------------------------TSFYHAVML-NDVSIVSYFLSEIP-STFDLAILL 162

Query: 219 NPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSP-LHLASENGKLSLLKRLLH 272
           + +H     GH ++   L      L Y       +     P + LA +N  +        
Sbjct: 163 SCIHITIKNGHVDMMILL------LDYMTSTNTNNSLLFIPDIKLAIDNKDI-------- 208

Query: 273 SYPDSIEFLDKKNRNI---LHLAAQNGHANVVVF-ISKLPEIEDMINSSDLEGNTPLHLA 328
              + ++ L K + NI            A +    I K  E      S     +  +   
Sbjct: 209 ---EMLQALFKYDINIYSANLENVLLDDAEIAKMIIEKHVEY----KSDSYTKDLDIVKN 261

Query: 329 AINNHFNIVLILARNMRVNIRATN 352
              +         R M VN    N
Sbjct: 262 NKLDEIISKNKELRLMYVNCVKKN 285

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 88.0 bits (219), Expect = 9e-20
 Identities = 41/218 (18%), Positives = 77/218 (35%), Gaps = 32/218 (14%)

Query: 161 LTHIACCIIKEKLSVL-----DHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDK 215
           L+ I     K+  S L          +  +  + AI   N V +   L     L N+L+ 
Sbjct: 4   LSRINTWKSKQLKSFLSSKDTFKADVHGHSASYYAIAD-NNVRLVCTLLNAGALKNLLE- 61

Query: 216 RDRNPLHYAAALGHFEIACRL----SDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLL 271
            +  PLH AA L   +I   L     D+      + D  G + L+ A ++G +  +K  +
Sbjct: 62  -NEFPLHQAATLEDTKIVKILLFSGLDDS-----QFDDKGNTALYYAVDSGNMQTVKLFV 115

Query: 272 HSYPDSIEFLDKKNRNI-LHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAA 329
                 + F  K       + A      ++V  F+S++P              + +H+  
Sbjct: 116 -KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP-----STFDLAILLSCIHITI 169

Query: 330 INNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLH 367
            N H +++++L      +    N           P + 
Sbjct: 170 KNGHVDMMILLLDY-MTSTNTNNSLLFI------PDIK 200

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 95.4 bits (238), Expect = 1e-22
 Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 30/201 (14%)

Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRL----SDED 240
           + L +A  +++   ++K+L+ +   ++         LH AA   + E A  L     +  
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 241 DTLAYERDCNGQSPLHLASENGKLSLLKRLL------------HSYPDSIEFLDKKNRNI 288
                     GQ+ LH+A  N  ++L++ LL              +      L     + 
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124

Query: 289 LHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILAR----- 342
           L  AA  G   +V + I    +I     + D  GNT LH+  +  +      +       
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADI----RAQDSLGNTVLHILILQPNKTFACQMYNLLLSY 180

Query: 343 ----NMRVNIRATNEKKQTAL 359
               +++      N +  T  
Sbjct: 181 DGGDHLKSLELVPNNQGLTPF 201

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 85.7 bits (213), Expect = 3e-19
 Identities = 36/227 (15%), Positives = 69/227 (30%), Gaps = 48/227 (21%)

Query: 149 GQSPLSLAIDAGLTHIAC-----CIIKEKLSVLDH------RGPNDLTLLHIAIIKSNFV 197
            +SPL          +A        + + L           RG    T LHIA +  + +
Sbjct: 3   WESPL---------LLAAKENDVQALSKLL--KFEGCEVHQRGAMGETALHIAALY-DNL 50

Query: 198 VMAKIL-----EAKRDLINVLDKRDRNPLHYAAALGHFEIACRL------------SDED 240
             A +L     E   + +       +  LH A    +  +   L                
Sbjct: 51  EAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVF 110

Query: 241 DTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANV 300
               +     G+ PL  A+  G   +++ L+  +   I   D     +LH+     +   
Sbjct: 111 HYRPHNLIYYGEHPLSFAACVGSEEIVRLLI-EHGADIRAQDSLGNTVLHILILQPNKTF 169

Query: 301 VVFISKL-------PEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
              +  L         ++ +    + +G TP  LA +  +  +   L
Sbjct: 170 ACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 83.0 bits (206), Expect = 2e-18
 Identities = 38/242 (15%), Positives = 71/242 (29%), Gaps = 37/242 (15%)

Query: 39  DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNG 98
           ++ L +AA+      + ++L+     V       ET +H+AA   N   A + M      
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLM-EAAPE 62

Query: 99  NNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAID 158
                       +  EG T LH AV   +  +   ++ +       ++            
Sbjct: 63  LVFEPMT----SELYEGQTALHIAVINQNVNLVRALLARGAS----VS------------ 102

Query: 159 AGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDR 218
                 A            +        L  A        + ++L      I   D    
Sbjct: 103 ------ARATGSVFHYRPHNLIYYGEHPLSFAACV-GSEEIVRLLIEHGADIRAQDSLGN 155

Query: 219 NPLHYAAALGHFEIACRLS---------DEDDTLAYERDCNGQSPLHLASENGKLSLLKR 269
             LH      +   AC++          D   +L    +  G +P  LA   G + + + 
Sbjct: 156 TVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQH 215

Query: 270 LL 271
           L+
Sbjct: 216 LM 217

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 74.9 bits (185), Expect = 1e-15
 Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 3/111 (2%)

Query: 251 GQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPE 309
            +SPL LA++   +  L +LL      +          LH+AA   +     V +   PE
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 310 I-EDMINSSDLEGNTPLHLAAINNHFNIV-LILARNMRVNIRATNEKKQTA 358
           +  + + S   EG T LH+A IN + N+V  +LAR   V+ RAT       
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYR 113

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 9/65 (13%)

Query: 37  NRDTALHIAARFGHKNVVMEILEL---------RPDLVSVENHKSETPMHVAARAGNFGV 87
             +T LHI     +K    ++  L            L  V N++  TP  +A   GN  +
Sbjct: 153 LGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVM 212

Query: 88  AKIFM 92
            +  M
Sbjct: 213 FQHLM 217

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 95.3 bits (237), Expect = 1e-22
 Identities = 50/229 (21%), Positives = 86/229 (37%), Gaps = 18/229 (7%)

Query: 182 NDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDD 241
           +++ + ++A        + + + A + L    D+  R  LH+A + GH EI   L     
Sbjct: 6   SNIMICNLAY-SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFL----- 59

Query: 242 TLAY-----ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNG 296
            L       ++D  G SPLH+A+  G   ++K LL      +  +++     LH AA   
Sbjct: 60  -LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKN 117

Query: 297 HANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIV-LILARNMRVNIRATNEKK 355
              + V    L E     ++ D    T +H AA   +  +V ++L      NI+ T    
Sbjct: 118 RHEIAVM---LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNT 174

Query: 356 QTALAIVQPSLHQNDILEGHGGSAS-GTGTTTTDLIAGPKNEDMAQNLL 403
              LA  +  + +   L   G S         T L        +    L
Sbjct: 175 PLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRL 223

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 84.5 bits (209), Expect = 7e-19
 Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 17/226 (7%)

Query: 37  NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
           +     ++A       +  E +     L +  +  S T +H A  AG+  + +  ++  G
Sbjct: 6   SNIMICNLAYSGKLDELK-ERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ-LG 63

Query: 97  -NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSL 155
              N           +D+ G +PLH A      ++   ++ K    +  +N+ G +PL  
Sbjct: 64  VPVN----------DKDDAGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHY 112

Query: 156 AIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDK 215
           A       IA  +++   +  D +   D T +H A  K N  ++  +L  K    N+ D 
Sbjct: 113 AASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDT 170

Query: 216 RDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASEN 261
               PLH A      E A  L  +  ++ Y  +   ++PL +A   
Sbjct: 171 EGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVAKGG 215

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 70.7 bits (173), Expect = 5e-14
 Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 16/198 (8%)

Query: 36  QNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPH 95
           Q+  TALH A   GH  +V  +L+L    V+ ++    +P+H+AA AG   + K  +   
Sbjct: 38  QDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96

Query: 96  GNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSL 155
            + N            ++ G TPLH A  K   ++A  ++          +    + +  
Sbjct: 97  AHVN----------AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHR 145

Query: 156 AIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDK 215
           A   G   +   ++  K S  + +     T LH+A  +        ++      I + +K
Sbjct: 146 AAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVTQGAS-IYIENK 203

Query: 216 RDRNPLHYAAALGHFEIA 233
            ++ PL  A   G   + 
Sbjct: 204 EEKTPLQVAK--GGLGLI 219

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 12/130 (9%)

Query: 27  NGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFG 86
            G  +  ++QN  T LH AA      + + +LE   +    ++H   T MH AA  GN  
Sbjct: 95  KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLK 153

Query: 87  VAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYIN 146
           +  I +    + N           QD EGNTPLH A  +   + A  ++ +    I   N
Sbjct: 154 MVHILLFYKASTN----------IQDTEGNTPLHLACDEERVEEAKFLVTQGAS-IYIEN 202

Query: 147 KAGQSPLSLA 156
           K  ++PL +A
Sbjct: 203 KEEKTPLQVA 212

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 11/101 (10%)

Query: 27  NGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFG 86
            G           TA+H AA  G+  +V  +L  +    ++++ +  TP+H+A       
Sbjct: 128 GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVE 186

Query: 87  VAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCD 127
            AK  +    +             +++E  TPL  A     
Sbjct: 187 EAKFLVTQGASIY----------IENKEEKTPLQVAKGGLG 217

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 93.3 bits (233), Expect = 2e-22
 Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 16/178 (8%)

Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRL----SDED 240
             +H    +     + + L    +L+N  D+R   PL +A+A G  E    L    +D  
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63

Query: 241 DTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANV 300
                      +S L LAS  G   ++  LL    D I   D      L  A +  H   
Sbjct: 64  -----ILAKERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKC 117

Query: 301 V-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQT 357
           V   +++  +    + +    G TP+ LA    +  +  ++  +  + +  +N     
Sbjct: 118 VEALLARGAD----LTTEADSGYTPMDLAVALGYRKVQQVIENH-ILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 90.2 bits (225), Expect = 2e-21
 Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 9/147 (6%)

Query: 217 DRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPD 276
           D   +H  AA G  +       + D L  + D  G +PL  AS  G++  ++ LL    D
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 277 SIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFN 335
               L K+  + L LA+  G+ ++V + + +  +    IN  D  G TPL  A   NH  
Sbjct: 62  -PHILAKERESALSLASTGGYTDIVGLLLERDVD----INIYDWNGGTPLLYAVRGNHVK 116

Query: 336 IV-LILARNMRVNIRATNEKKQTALAI 361
            V  +LAR   +      +   T + +
Sbjct: 117 CVEALLARGADLT--TEADSGYTPMDL 141

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 71.7 bits (177), Expect = 6e-15
 Identities = 36/213 (16%), Positives = 65/213 (30%), Gaps = 46/213 (21%)

Query: 115 GNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLS 174
            +  +H    + +       +RK   L+   ++ G +PL  A   G              
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG-------------- 47

Query: 175 VLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIAC 234
                         I           + L       ++L K   + L  A+  G+ +I  
Sbjct: 48  -------------EIET--------VRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86

Query: 235 RLSDEDDTLAY--ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLA 292
            L + D         D NG +PL  A     +  ++ LL    D +          + LA
Sbjct: 87  LLLERD---VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLA 142

Query: 293 AQNGHANVV-VFISKLPEIEDMINSSDLEGNTP 324
              G+  V  V  + + +    +  S+L    P
Sbjct: 143 VALGYRKVQQVIENHILK----LFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 62.8 bits (154), Expect = 7e-12
 Identities = 29/195 (14%), Positives = 62/195 (31%), Gaps = 48/195 (24%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG-NG 98
            ++H  A  G  + + E L    +LV+  + +  TP+  A+  G     +  +   G + 
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE-WGADP 62

Query: 99  NNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAID 158
           +             +E  + L  A       +   ++ +D + I   +  G +PL     
Sbjct: 63  H----------ILAKERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPL----- 106

Query: 159 AGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDR 218
                 A                      H+  +++       +L    D +        
Sbjct: 107 ----LYAV-----------RGN-------HVKCVEA-------LLARGAD-LTTEADSGY 136

Query: 219 NPLHYAAALGHFEIA 233
            P+  A ALG+ ++ 
Sbjct: 137 TPMDLAVALGYRKVQ 151

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 57.0 bits (139), Expect = 7e-10
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 8   LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSV 67
           + +   +G+   ++E  R   N +    +   T L  A+ FG    V  +LE   D   +
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHI 64

Query: 68  ENHKSETPMHVAARAGNFGVAKIFMRPHG-NGNNTGTFDDILRKQDEEGNTPLHNAVRK 125
              + E+ + +A+  G   +  + +     + N            D  G TPL  AVR 
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLE-RDVDIN----------IYDWNGGTPLLYAVRG 112

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 52.0 bits (126), Expect = 4e-08
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 11/89 (12%)

Query: 37  NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
            R++AL +A+  G+ ++V  +LE   D +++ +    TP+  A R  +    +  +    
Sbjct: 68  ERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGA 126

Query: 97  NGNNTGTFDDILRKQDEEGNTPLHNAVRK 125
           +             + + G TP+  AV  
Sbjct: 127 DLT----------TEADSGYTPMDLAVAL 145

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 46.3 bits (111), Expect = 3e-06
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 35  SQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKI 90
             N  T L  A R  H   V  +L    D ++ E     TPM +A   G   V ++
Sbjct: 99  DWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQV 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 92.1 bits (230), Expect = 2e-22
 Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 17/161 (10%)

Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLA 244
             L  A  + +   + ++L  +    + L++  +  L      G   IA  L      L 
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALEL------LK 56

Query: 245 Y-----ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHAN 299
                  +D +G SP+H A+  G L  LK L+  +   +   D      +HLA Q GH  
Sbjct: 57  QGASPNVQDTSGTSPVHDAARTGFLDTLKVLV-EHGADVNVPDGTGALPIHLAVQEGHTA 115

Query: 300 VVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
           VV F++   ++    +  D  G TPL LA      ++V IL
Sbjct: 116 VVSFLAAESDL----HRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 80.9 bits (201), Expect = 3e-18
 Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 9/145 (6%)

Query: 216 RDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYP 275
           R  + L  AAA G  +   RL   +       +  G++ L +    G  ++   LL    
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELL-KQG 58

Query: 276 DSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHF 334
            S    D    + +H AA+ G  + + V +    ++    N  D  G  P+HLA    H 
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV----NVPDGTGALPIHLAVQEGHT 114

Query: 335 NIVLILARNMRVNIRATNEKKQTAL 359
            +V  LA     ++   + +  T L
Sbjct: 115 AVVSFLAAE--SDLHRRDARGLTPL 137

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 56.3 bits (137), Expect = 9e-10
 Identities = 38/201 (18%), Positives = 65/201 (32%), Gaps = 48/201 (23%)

Query: 71  KSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKM 130
           ++   +  AA  G+    +  +       +           +  G T L   +       
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPD---------ALNRFGKTALQVMMF------ 45

Query: 131 AFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIA 190
                                        G T IA  ++K+  S  + +  +  + +H A
Sbjct: 46  -----------------------------GSTAIALELLKQGASP-NVQDTSGTSPVHDA 75

Query: 191 IIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCN 250
                F+   K+L      +NV D     P+H A   GH  +   L+ E D   + RD  
Sbjct: 76  ART-GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD--LHRRDAR 132

Query: 251 GQSPLHLASENGKLSLLKRLL 271
           G +PL LA + G   L+  L 
Sbjct: 133 GLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 33/194 (17%), Positives = 57/194 (29%), Gaps = 48/194 (24%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN 99
             L  AA  G    V  +L          N   +T + V    G+  +A   ++  G   
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLK-QGASP 61

Query: 100 NTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDA 159
           N          QD  G +P+H+A R                                   
Sbjct: 62  N---------VQDTSGTSPVHDAART---------------------------------- 78

Query: 160 GLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRN 219
           G       +++    V +         +H+A+ +     +   L A+ D ++  D R   
Sbjct: 79  GFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQE-GHTAVVSFLAAESD-LHRRDARGLT 135

Query: 220 PLHYAAALGHFEIA 233
           PL  A   G  ++ 
Sbjct: 136 PLELALQRGAQDLV 149

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 43.2 bits (103), Expect = 3e-05
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKI 90
             +H+A + GH  VV   L    D +   + +  TP+ +A + G   +  I
Sbjct: 103 LPIHLAVQEGHTAVV-SFLAAESD-LHRRDARGLTPLELALQRGAQDLVDI 151

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 94.4 bits (236), Expect = 3e-22
 Identities = 45/258 (17%), Positives = 86/258 (33%), Gaps = 34/258 (13%)

Query: 110 KQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKA---GQSPLSLAIDAGLTHIAC 166
             D+     +  A +    +    ++         + +      + L  A       +  
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAG----YDVRQPDKENVTLLHWAAINNRIDLVK 59

Query: 167 CIIKEKLSVLDHRGPND-LTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAA 225
             I +   V D  G +   T LH A  +   + M   L       +++D    + +H AA
Sbjct: 60  YYISKGAIV-DQLGGDLNSTPLHWATRQ-GHLSMVVQLMKYGADPSLIDGEGCSCIHLAA 117

Query: 226 ALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENG-KLSLLKRLLHSYPDSIE 279
             GH  I   L      +A        D NG +PL  A+     +   + LL      + 
Sbjct: 118 QFGHTSIVAYL------IAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS-VN 170

Query: 280 FLDKKNRNI-LHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIV 337
             DK ++N  LH A   G+  V+ + +     +    ++ +++G + L LA    +  ++
Sbjct: 171 LGDKYHKNTALHWAVLAGNTTVISLLLEAGANV----DAQNIKGESALDLAKQRKNVWMI 226

Query: 338 LILARNMRVNIRATNEKK 355
             L        R      
Sbjct: 227 NHL-----QEARQAKGYD 239

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 94.0 bits (235), Expect = 4e-22
 Identities = 55/242 (22%), Positives = 100/242 (41%), Gaps = 26/242 (10%)

Query: 37  NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
                +  A ++G      E++E   D V   + ++ T +H AA      + K ++   G
Sbjct: 8   YSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYIS-KG 65

Query: 97  NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRK--DPELICYINKAGQSPLS 154
                     + +   +  +TPLH A R+    M   +++   DP L   I+  G S + 
Sbjct: 66  A--------IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL---IDGEGCSCIH 114

Query: 155 LAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLD 214
           LA   G T I   +I +   V D    N +T L  A  +++ V   ++L      +N+ D
Sbjct: 115 LAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD 173

Query: 215 KRDRN-PLHYAAALGHFEIACRL----SDEDDTLAYERDCNGQSPLHLASENGKLSLLKR 269
           K  +N  LH+A   G+  +   L    ++ D      ++  G+S L LA +   + ++  
Sbjct: 174 KYHKNTALHWAVLAGNTTVISLLLEAGANVD-----AQNIKGESALDLAKQRKNVWMINH 228

Query: 270 LL 271
           L 
Sbjct: 229 LQ 230

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 89.0 bits (222), Expect = 2e-20
 Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 25/160 (15%)

Query: 210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKL 264
           +  +D      +  A   G +E    L      +       + D    + LH A+ N ++
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCREL------VEAGYDVRQPDKENVTLLHWAAINNRI 55

Query: 265 SLLKRLLHSYPDSIEFLDKKNRNI----LHLAAQNGHANVVVF-ISKLPEIEDMINSSDL 319
            L+K  +         +D+   ++    LH A + GH ++VV  +    +     +  D 
Sbjct: 56  DLVKYYISKGAI----VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP----SLIDG 107

Query: 320 EGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
           EG + +HLAA   H +IV  L      ++   ++   T L
Sbjct: 108 EGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPL 146

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 93.6 bits (234), Expect = 3e-22
 Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 20/202 (9%)

Query: 146 NKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKIL-E 204
           ++ G++ L LA     +  A  +++      + +     T LH A+   +   + +IL  
Sbjct: 22  DRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSA-DAQGVFQILIR 79

Query: 205 AKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLAS 259
            +   ++        PL  AA L    +   L      +         D  G+S LH A+
Sbjct: 80  NRATDLDARMHDGTTPLILAARLAVEGMLEDL------INSHADVNAVDDLGKSALHWAA 133

Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSD 318
               +     LL     + +  + +    L LAA+ G      V +          + +D
Sbjct: 134 AVNNVDAAVVLL-KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR----DITD 188

Query: 319 LEGNTPLHLAAINNHFNIVLIL 340
                P  +A    H +IV +L
Sbjct: 189 HMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 93.2 bits (233), Expect = 5e-22
 Identities = 39/179 (21%), Positives = 65/179 (36%), Gaps = 8/179 (4%)

Query: 182 NDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDD 241
              T LH+A    +    AK L       N+ D   R PLH A +     +   L     
Sbjct: 24  TGETALHLAARY-SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82

Query: 242 TLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV 301
           T    R  +G +PL LA+      +L+ L+ +    +  +D   ++ LH AA   + +  
Sbjct: 83  TDLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDDLGKSALHWAAAVNNVDAA 141

Query: 302 VF-ISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
           V  +          +  +    TPL LAA    +    +L  +   N   T+   +   
Sbjct: 142 VVLLKNGANK----DMQNNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPR 195

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 92.5 bits (231), Expect = 9e-22
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 17/158 (10%)

Query: 208 DLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENG 262
            L N  D+     LH AA     + A RL      L        +D  G++PLH A    
Sbjct: 16  SLHNQTDRTGETALHLAARYSRSDAAKRL------LEASADANIQDNMGRTPLHAAVSAD 69

Query: 263 KLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEG 321
              + + L+ +    ++         L LAA+     ++   I+   ++    N+ D  G
Sbjct: 70  AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV----NAVDDLG 125

Query: 322 NTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
            + LH AA  N+ +  ++L +N   N    N +++T L
Sbjct: 126 KSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPL 162

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 78.6 bits (195), Expect = 6e-17
 Identities = 46/197 (23%), Positives = 80/197 (40%), Gaps = 13/197 (6%)

Query: 37  NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
             +TALH+AAR+   +   + L       +++++   TP+H A  A   GV +I +R + 
Sbjct: 24  TGETALHLAARYSRSDAA-KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR-NR 81

Query: 97  NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLA 156
             +        L  +  +G TPL  A R     M   +I    + +  ++  G+S L  A
Sbjct: 82  ATD--------LDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWA 132

Query: 157 IDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKR 216
                   A  ++K   +  D +   + T L +A  +      AK+L       ++ D  
Sbjct: 133 AAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAARE-GSYETAKVLLDHFANRDITDHM 190

Query: 217 DRNPLHYAAALGHFEIA 233
           DR P   A    H +I 
Sbjct: 191 DRLPRDIAQERMHHDIV 207

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 94.9 bits (237), Expect = 4e-22
 Identities = 44/287 (15%), Positives = 83/287 (28%), Gaps = 61/287 (21%)

Query: 25  RLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGN 84
           RL  N ++  + +  + +H AA  GH+  +  ++      V++      +P+H A   G+
Sbjct: 46  RLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGH 104

Query: 85  FGVAKIFMRPHG-NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELIC 143
               KI ++ HG   N              + +TPL NA                     
Sbjct: 105 LSCVKILLK-HGAQVN----------GVTADWHTPLFNACVS------------------ 135

Query: 144 YINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKIL 203
                           G       +++   SV      +  + +H A  +   V     L
Sbjct: 136 ----------------GSWDCVNLLLQHGASV--QPESDLASPIHEAARR-GHVECVNSL 176

Query: 204 EAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY----ERDCNGQSPLHLAS 259
            A    I+        PL+ A          +L      L       +     SPLH   
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKL------LESGADVNQGKGQDSPLHAVV 230

Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
                 L   L+  +    +  + + +  + L         +    +
Sbjct: 231 RTASEELACLLM-DFGADTQAKNAEGKRPVELVPPESPLAQLFLERE 276

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 92.6 bits (231), Expect = 3e-21
 Identities = 49/316 (15%), Positives = 99/316 (31%), Gaps = 47/316 (14%)

Query: 44  IAARFGHKNVVMEILELRPDLVSVENHKSE----TPMHVAARAGNFGVAKIFMRPHGNGN 99
           + +   H +    ++     + S++  +       P       G   ++        N  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLS--------NPL 52

Query: 100 NTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDA 159
                            +P+H A           +I +    +  I     SPL  A   
Sbjct: 53  M---------GDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLG 102

Query: 160 GLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRN 219
           G       ++K    V +    +  T L  A   S       +L      +   +    +
Sbjct: 103 GHLSCVKILLKHGAQV-NGVTADWHTPLFNAC-VSGSWDCVNLLLQHGASVQP-ESDLAS 159

Query: 220 PLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLKRLLHSY 274
           P+H AA  GH E    L      +AY      +  +  +PL+LA EN + + +K+LL S 
Sbjct: 160 PIHEAARRGHVECVNSL------IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213

Query: 275 PDSIEFLDKKN--RNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAIN 331
            D    +++     + LH   +     +  + +    +      + + EG  P+ L    
Sbjct: 214 AD----VNQGKGQDSPLHAVVRTASEELACLLMDFGADT----QAKNAEGKRPVELVPPE 265

Query: 332 NHFNIVLILARNMRVN 347
           +    + +      + 
Sbjct: 266 SPLAQLFLEREGASLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 10/64 (15%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 33  DMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFM 92
           +  + +D+ LH   R   + +   +++   D    +N + + P+ +        +A++F+
Sbjct: 217 NQGKGQDSPLHAVVRTASEELACLLMDFGAD-TQAKNAEGKRPVELVPPESP--LAQLFL 273

Query: 93  RPHG 96
              G
Sbjct: 274 EREG 277

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 92.5 bits (231), Expect = 4e-22
 Identities = 34/203 (16%), Positives = 71/203 (34%), Gaps = 25/203 (12%)

Query: 144 YINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKIL 203
           +++K G+    +  +  +      +   +    D       T L +A +          L
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFLRNYR----DSYN---RTPLMVACML-GMENAIDKL 54

Query: 204 EAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLA 258
               D +   D      L +A       IA +L      L+       +D +G++PL  +
Sbjct: 55  VENFDKLEDKDIEGSTALIWAVKNNRLGIAEKL------LSKGSNVNTKDFSGKTPLMWS 108

Query: 259 SENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSS 317
              G   +   LL  +  ++   + +    L +A++ G + +V   +    +I    ++ 
Sbjct: 109 IIFGYSEMSYFLL-EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI----SAR 163

Query: 318 DLEGNTPLHLAAINNHFNIVLIL 340
           DL G T    A I     ++ I 
Sbjct: 164 DLTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 88.2 bits (220), Expect = 1e-20
 Identities = 40/183 (21%), Positives = 67/183 (36%), Gaps = 29/183 (15%)

Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLA 244
            +  I   KS       I +    L N  D  +R PL  A  LG      +L      + 
Sbjct: 10  IVEKIKDEKS-------INQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKL------VE 56

Query: 245 Y-----ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHAN 299
                 ++D  G + L  A +N +L + +  L S   ++   D   +  L  +   G++ 
Sbjct: 57  NFDKLEDKDIEGSTALIWAVKNNRLGIAE-KLLSKGSNVNTKDFSGKTPLMWSIIFGYSE 115

Query: 300 VV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIV--LILARNMRVNIRATNEKKQ 356
           +    +     +    N  +LEG TPL +A+      IV  L+       +I A +    
Sbjct: 116 MSYFLLEHGANV----NDRNLEGETPLIVASKYGRSEIVKKLLEL---GADISARDLTGL 168

Query: 357 TAL 359
           TA 
Sbjct: 169 TAE 171

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 85.1 bits (212), Expect = 2e-19
 Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 14/150 (9%)

Query: 211 NVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRL 270
           + +DK               +         D L   RD   ++PL +A   G  + + +L
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNL-------DFLRNYRDSYNRTPLMVACMLGMENAIDKL 54

Query: 271 LHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAA 329
           +    D +E  D +    L  A +N    +    +SK   +    N+ D  G TPL  + 
Sbjct: 55  V-ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV----NTKDFSGKTPLMWSI 109

Query: 330 INNHFNIVLILARNMRVNIRATNEKKQTAL 359
           I  +  +   L  +   N+   N + +T L
Sbjct: 110 IFGYSEMSYFLLEH-GANVNDRNLEGETPL 138

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 65.5 bits (161), Expect = 1e-12
 Identities = 45/245 (18%), Positives = 73/245 (29%), Gaps = 66/245 (26%)

Query: 33  DMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFM 92
            M +N +    I           + L+    L +  +  + TP+ VA   G        +
Sbjct: 3   HMDKNGEIVEKIKDEKSIN----QNLDF---LRNYRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 93  RPHG-NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQS 151
             +                +D EG+T L  AV+     +A        E +         
Sbjct: 56  E-NFDKLE----------DKDIEGSTALIWAVKNNRLGIA--------EKL--------- 87

Query: 152 PLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLIN 211
            LS   +          +  K    D  G    T L  +II   +  M+  L      +N
Sbjct: 88  -LSKGSN----------VNTK----DFSG---KTPLMWSIIF-GYSEMSYFLLEHGANVN 128

Query: 212 VLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSL 266
             +     PL  A+  G  EI  +L      L        RD  G +    A   G+  +
Sbjct: 129 DRNLEGETPLIVASKYGRSEIVKKL------LELGADISARDLTGLTAEASARIFGRQEV 182

Query: 267 LKRLL 271
           +K   
Sbjct: 183 IKIFT 187

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 89.3 bits (223), Expect = 4e-21
 Identities = 46/172 (26%), Positives = 66/172 (38%), Gaps = 18/172 (10%)

Query: 175 VLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIAC 234
              H G +    L  A          +IL A    +N  D     PLH AA  GH EI  
Sbjct: 6   HHHHHGSDLGKKLLEAARA-GRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVE 64

Query: 235 RLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNIL 289
            L      L         D  G +PL LA+  G L +++ LL      +   D +    L
Sbjct: 65  VL------LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLL-KNGADVNANDMEGHTPL 117

Query: 290 HLAAQNGHANVVVF-ISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
           HLAA  GH  +V   +    ++    N+ D  G T   ++  N + ++  IL
Sbjct: 118 HLAAMFGHLEIVEVLLKNGADV----NAQDKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 68.5 bits (169), Expect = 6e-14
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISK 306
             +    L  A+  G+   ++ L+ +    +   D      LHLAA NGH  +V V +  
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILM-ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
             ++    N+ D  G TPL LAA+  H  IV +L +N   ++ A + +  T L
Sbjct: 70  GADV----NAVDHAGMTPLRLAALFGHLEIVEVLLKN-GADVNANDMEGHTPL 117

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 58.1 bits (142), Expect = 3e-10
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 14/171 (8%)

Query: 106 DILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIA 165
                   +    L  A R         ++    + +   + +G +PL LA   G   I 
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIV 63

Query: 166 CCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAA 225
             ++K    V +      +T L +A +    + + ++L      +N  D     PLH AA
Sbjct: 64  EVLLKNGADV-NAVDHAGMTPLRLAALF-GHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121

Query: 226 ALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLKRLL 271
             GH EI   L      L        +D  G++   ++ +NG   L + L 
Sbjct: 122 MFGHLEIVEVL------LKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 57.4 bits (140), Expect = 5e-10
 Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 49/198 (24%)

Query: 37  NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
           +    L  AAR G  + V  ++    D V+ E+    TP+H+AA  G+  + ++ ++ +G
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLK-NG 70

Query: 97  -NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSL 155
            + N            D  G TPL  A      ++   +++   +    +N         
Sbjct: 71  ADVN----------AVDHAGMTPLRLAALFGHLEIVEVLLKNGAD----VNANDM----- 111

Query: 156 AIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDK 215
                                        T LH+A +    + + ++L      +N  DK
Sbjct: 112 --------------------------EGHTPLHLAAMF-GHLEIVEVLLKNGADVNAQDK 144

Query: 216 RDRNPLHYAAALGHFEIA 233
             +     +   G+ ++A
Sbjct: 145 FGKTAFDISIDNGNEDLA 162

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 40.0 bits (95), Expect = 4e-04
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 1/48 (2%)

Query: 312 DMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
              +    +    L  AA     + V IL  N   ++ A +    T L
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPL 51

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 89.0 bits (222), Expect = 5e-21
 Identities = 32/182 (17%), Positives = 64/182 (35%), Gaps = 19/182 (10%)

Query: 180 GPND-LTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSD 238
           G  + +  +     + N V +   L+   + +N  D    +PLH+A   G   +   L  
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEML-- 58

Query: 239 EDDTLAY-----ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAA 293
               +         +    +PLHLA+ +G   ++++LL  Y   I  +++     LH A 
Sbjct: 59  ----IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL-QYKADINAVNEHGNVPLHYAC 113

Query: 294 QNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATN 352
             G   V    ++        ++  +  G  P+  A       +     +    N+    
Sbjct: 114 FWGQDQVAEDLVANGAL----VSICNKYGEMPVDKAKAPLRELLRERAEKM-GQNLNRIP 168

Query: 353 EK 354
            K
Sbjct: 169 YK 170

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 87.5 bits (218), Expect = 2e-20
 Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 17/177 (9%)

Query: 220 PLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIE 279
            +      G+        D  +    + D +G SPLH A   G+ ++++ L+      I 
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-MRGARIN 66

Query: 280 FLDKKNRNILHLAAQNGHANVVVF-ISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVL 338
            +++ +   LHLAA +GH ++V   +    +I    N+ +  GN PLH A       +  
Sbjct: 67  VMNRGDDTPLHLAASHGHRDIVQKLLQYKADI----NAVNEHGNVPLHYACFWGQDQVAE 122

Query: 339 ILARNMRVNIRATNEKKQTALAIVQPSLHQN--DILEGHGGS--------ASGTGTT 385
            L  N    +   N+  +  +   +  L +   +  E  G +            GTT
Sbjct: 123 DLVAN-GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 76.3 bits (189), Expect = 1e-16
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 6/111 (5%)

Query: 250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLP 308
                +      G    ++  L +  + +   D    + LH A + G + VV + I +  
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63

Query: 309 EIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
                IN  +   +TPLHLAA + H +IV  L +  + +I A NE     L
Sbjct: 64  R----INVMNRGDDTPLHLAASHGHRDIVQKLLQY-KADINAVNEHGNVPL 109

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 72.1 bits (178), Expect = 4e-15
 Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 20/191 (10%)

Query: 112 DEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKE 171
             E    +    R+ +       +      +   +  G SPL  A   G + +   +I  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 172 KLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFE 231
              + +     D T LH+A        + + L   +  IN +++    PLHYA   G  +
Sbjct: 62  GARI-NVMNRGDDTPLHLAASH-GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQ 119

Query: 232 IACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNR 286
           +A  L      +A        +  G+ P+  A    +  L +R       ++      NR
Sbjct: 120 VAEDL------VANGALVSICNKYGEMPVDKAKAPLRELLRERAE-KMGQNL------NR 166

Query: 287 NILHLAAQNGH 297
                    G 
Sbjct: 167 IPYKDTFWKGT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 65.1 bits (160), Expect = 1e-12
 Identities = 37/224 (16%), Positives = 69/224 (30%), Gaps = 55/224 (24%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG-NG 98
             +    R G+   V   L+   + ++  +    +P+H A R G   V ++ +   G   
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM-RGARI 65

Query: 99  NNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAID 158
           N            +   +TPLH A       +   +++   + I  +N+ G  PL     
Sbjct: 66  N----------VMNRGDDTPLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPL----- 109

Query: 159 AGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDR 218
               H AC                                +A+ L A   L+++ +K   
Sbjct: 110 ----HYAC--------------------------FWGQDQVAEDLVANGALVSICNKYGE 139

Query: 219 NPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENG 262
            P+  A A     +  R           ++ N + P       G
Sbjct: 140 MPVDKAKAPLRELLRERA------EKMGQNLN-RIPYKDTFWKG 176

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 53.6 bits (130), Expect = 1e-08
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 13/90 (14%)

Query: 37  NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
             DT LH+AA  GH+++V ++L+ + D ++  N     P+H A   G   VA+  +  +G
Sbjct: 71  GDDTPLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVA-NG 128

Query: 97  -NGNNTGTFDDILRKQDEEGNTPLHNAVRK 125
              +            ++ G  P+  A   
Sbjct: 129 ALVS----------ICNKYGEMPVDKAKAP 148

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 88.2 bits (220), Expect = 7e-21
 Identities = 31/165 (18%), Positives = 54/165 (32%), Gaps = 18/165 (10%)

Query: 182 NDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDD 241
            +   +H    +   + +A  +E +   IN  D+    PL +AAA G   +   L     
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFL----- 55

Query: 242 TLAY-----ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNG 296
            L             +S L LA   G   ++K LL    D +   D      L  A    
Sbjct: 56  -LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGN 113

Query: 297 HANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
           H   V + +    +           G   + LA    + ++  ++
Sbjct: 114 HVKCVKMLLESGADP----TIETDSGYNSMDLAVALGYRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 85.5 bits (213), Expect = 6e-20
 Identities = 30/148 (20%), Positives = 57/148 (38%), Gaps = 18/148 (12%)

Query: 220 PLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLKRLLHSY 274
            +H  AA G              +         D  G +PL  A+ +G++++++ LL   
Sbjct: 6   SVHQLAAQGEMLYLATR------IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLL-QN 58

Query: 275 PDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNH 333
               + L K   + L LA   G+ ++V + +    ++    N  D  G TPL  A   NH
Sbjct: 59  GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV----NEYDWNGGTPLLYAVHGNH 114

Query: 334 FNIVLILARNMRVNIRATNEKKQTALAI 361
              V +L  +   +     +    ++ +
Sbjct: 115 VKCVKMLLES-GADPTIETDSGYNSMDL 141

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 74.7 bits (185), Expect = 4e-16
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 7/111 (6%)

Query: 250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLP 308
                +H  +  G++  L   +    + I   D++    L  AA +G   VV   +    
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRI-EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 309 EIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
           +             + L LA    + +IV +L     V++   +    T L
Sbjct: 61  DP----QLLGKGRESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPL 106

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 58.9 bits (144), Expect = 1e-10
 Identities = 39/206 (18%), Positives = 59/206 (28%), Gaps = 61/206 (29%)

Query: 73  ETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAF 132
              +H  A  G        +      N        +   DEEG TPL  A       +  
Sbjct: 4   SLSVHQLAAQGEMLYLATRI---EQENV-------INHTDEEGFTPLMWAAAHGQIAVVE 53

Query: 133 TMIRK--DPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIA 190
            +++   DP+L+    K  +S LSLA   G                           +  
Sbjct: 54  FLLQNGADPQLL---GKGRESALSLACSKG---------------------------YTD 83

Query: 191 IIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY----- 245
           I         K+L      +N  D     PL YA    H +    L      L       
Sbjct: 84  I--------VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML------LESGADPT 129

Query: 246 ERDCNGQSPLHLASENGKLSLLKRLL 271
               +G + + LA   G  S+ + + 
Sbjct: 130 IETDSGYNSMDLAVALGYRSVQQVIE 155

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 58.2 bits (142), Expect = 3e-10
 Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 49/195 (25%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG-NG 98
            ++H  A  G    +   +E     ++  + +  TP+  AA  G   V +  ++ +G + 
Sbjct: 5   LSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADP 62

Query: 99  NNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAID 158
                         +   + L  A  K                                 
Sbjct: 63  Q----------LLGKGRESALSLACSK--------------------------------- 79

Query: 159 AGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDR 218
            G T I   ++   + V +    N  T L  A+  ++   +  +LE+  D   +      
Sbjct: 80  -GYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGY 136

Query: 219 NPLHYAAALGHFEIA 233
           N +  A ALG+  + 
Sbjct: 137 NSMDLAVALGYRSVQ 151

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 49.7 bits (120), Expect = 2e-07
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 13/90 (14%)

Query: 37  NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
            R++AL +A   G+ ++V  +L+   D V+  +    TP+  A    +    K+ +   G
Sbjct: 68  GRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLE-SG 125

Query: 97  -NGNNTGTFDDILRKQDEEGNTPLHNAVRK 125
            +             + + G   +  AV  
Sbjct: 126 ADPT----------IETDSGYNSMDLAVAL 145

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 45.5 bits (109), Expect = 6e-06
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 35  SQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKI 90
             N  T L  A    H   V  +LE   D  ++E       M +A   G   V ++
Sbjct: 99  DWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQV 153

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 89.0 bits (222), Expect = 1e-20
 Identities = 42/202 (20%), Positives = 71/202 (35%), Gaps = 14/202 (6%)

Query: 146 NKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEA 205
                + L  A       +   +      V D       T L+IA+   N + +AK L  
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHN-NDIEIAKALID 60

Query: 206 KRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLS 265
           +   IN+ +    +P  YA A G  EI   +         + +  G + L  A+E G + 
Sbjct: 61  RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120

Query: 266 LLKRLL-HSYPDSIEFLDKKNRNILHLAA-----QNGHANVV-VFISKLPEIEDMINSSD 318
            +K LL     D I+F +      L  A         + ++V + +    +     +  D
Sbjct: 121 NVKLLLEDGRED-IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ----SIKD 175

Query: 319 LEGNTPLHLAAINNHFNIVLIL 340
             G T +  A    +  I  IL
Sbjct: 176 NSGRTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 86.3 bits (215), Expect = 8e-20
 Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 10/149 (6%)

Query: 214 DKRDRNPLHYAAALGHFEIACRLSDEDDTLAY--ERDCNGQSPLHLASENGKLSLLKRLL 271
                  L  A      ++   L D         E D  G +PL++A  N  + + K L+
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTT---YQVDEVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 272 HSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAI 330
               D I   +  + +    A   G   ++   +       D +N  +  G   L  AA 
Sbjct: 60  DRGAD-INLQNSISDSPYLYAGAQGRTEILAYMLKH--ATPD-LNKHNRYGGNALIPAAE 115

Query: 331 NNHFNIVLILARNMRVNIRATNEKKQTAL 359
             H + V +L  + R +I   N+   TAL
Sbjct: 116 KGHIDNVKLLLEDGREDIDFQNDFGYTAL 144

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 72.5 bits (179), Expect = 6e-15
 Identities = 16/114 (14%), Positives = 41/114 (35%), Gaps = 6/114 (5%)

Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFIS 305
           +     + L  A++     + + +L      ++ +D +    L++A  N    +    I 
Sbjct: 2   KTYEVGALLEAANQRDTKKVKE-ILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 306 KLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
           +  +    IN  +   ++P   A       I+  + ++   ++   N     AL
Sbjct: 61  RGAD----INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNAL 110

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 69.0 bits (170), Expect = 9e-14
 Identities = 37/202 (18%), Positives = 74/202 (36%), Gaps = 17/202 (8%)

Query: 37  NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
                L  A +   K V  EIL+     V   + +  TP+++A    +  +AK  +   G
Sbjct: 5   EVGALLEAANQRDTKKVK-EILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID-RG 62

Query: 97  -NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSL 155
            + N           Q+   ++P   A  +   ++   M++     +   N+ G + L  
Sbjct: 63  ADIN----------LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIP 112

Query: 156 AIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVV----MAKILEAKRDLIN 211
           A + G       ++++    +D +     T L  A+           + K+L       +
Sbjct: 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172

Query: 212 VLDKRDRNPLHYAAALGHFEIA 233
           + D   R  + YA   G+ EI+
Sbjct: 173 IKDNSGRTAMDYANQKGYTEIS 194

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 89.8 bits (223), Expect = 2e-20
 Identities = 51/299 (17%), Positives = 79/299 (26%), Gaps = 65/299 (21%)

Query: 68  ENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCD 127
                   +  A    N    +  +          T  D   K  E G T L  A+    
Sbjct: 9   PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLT--DSEFKDPETGKTCLLKAM---- 62

Query: 128 GKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLL 187
                         +   N    +   L   A  T      +    +   ++G    T L
Sbjct: 63  --------------LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKG---QTAL 105

Query: 188 HIAIIKSNFVVM-------------AKILEAKRDLINVLDKRDRNPLHYAAALGHFEIAC 234
           HIAI + N  ++             A     K+            PL  AA      I  
Sbjct: 106 HIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK 165

Query: 235 RLSDEDDTLAY--ERDCNGQSPLHLASENGKLSLLK---------------RLLHSYPDS 277
            L       A    RD  G + LH   E    ++                   LH     
Sbjct: 166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKL 225

Query: 278 IEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFN 335
            E  ++K    L LAA +G   V+   + +           ++      H AA ++H +
Sbjct: 226 EEITNRKGLTPLALAASSGKIGVLAYILQR-----------EIHEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 82.1 bits (203), Expect = 8e-18
 Identities = 36/281 (12%), Positives = 84/281 (29%), Gaps = 53/281 (18%)

Query: 8   LFRALRRGDAATVRE----SARLNGNGILDMSQNRD---TALHIA---ARFGHKNVVMEI 57
           +F A+ + +   +        R          ++ +   T L  A      G  + +  +
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76

Query: 58  LELRPDLVSV----------ENHKSETPMHVAARAGNFGVAKIFMR----PHGNGNNTGT 103
           L++     S+            +K +T +H+A    N  +  + +          N    
Sbjct: 77  LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF 136

Query: 104 FDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPEL--ICYINKAGQSPLSLAIDAGL 161
                R     G  PL  A       +   +++   +   I   +  G + L   ++   
Sbjct: 137 KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD 196

Query: 162 THIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPL 221
             +                  D T    ++     ++ AK+      L  + +++   PL
Sbjct: 197 NTV------------------DNTKFVTSMYNEILILGAKLHP-TLKLEEITNRKGLTPL 237

Query: 222 HYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENG 262
             AA+ G   +   +         +R+ +     H A+ + 
Sbjct: 238 ALAASSGKIGVLAYI--------LQREIHEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 22/147 (14%), Positives = 40/147 (27%), Gaps = 31/147 (21%)

Query: 214 DKRDRNPLHYAAALGHFEIACRLSDEDDTLA-------YERDCNGQSPLHLASENGKLSL 266
              DR  +  A A  + +    L               ++    G++ L  A  N     
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLH--- 66

Query: 267 LKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLH 326
                          + +N  I  L       + +        +      S  +G T LH
Sbjct: 67  ---------------NGQNDTIALLLDVARKTDSLKQF-----VNASYTDSYYKGQTALH 106

Query: 327 LAAINNHFNIV-LILARNMRVNIRATN 352
           +A    +  +V L++     V   A  
Sbjct: 107 IAIERRNMTLVTLLVENGADVQAAANG 133

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 86.7 bits (216), Expect = 3e-20
 Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 7/151 (4%)

Query: 214 DKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHS 273
           +      L  AA  G  E   +L         + +    +PLH A+   ++S+++ LL  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-Q 63

Query: 274 YPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINN 332
           +   +   DK     LH A   GH  V  + +     +    N +DL   TPLH AA   
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV----NVADLWKFTPLHEAAAKG 119

Query: 333 HFNIVLILARNMRVNIRATNEKKQTALAIVQ 363
            + I  +L ++   +    N    T L +V+
Sbjct: 120 KYEICKLLLQH-GADPTKKNRDGNTPLDLVK 149

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 79.7 bits (198), Expect = 8e-18
 Identities = 34/165 (20%), Positives = 57/165 (34%), Gaps = 18/165 (10%)

Query: 182 NDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDD 241
                L  A    +   + K+   +      ++ R   PLH+AA      +   L     
Sbjct: 7   EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL----- 61

Query: 242 TLAY-----ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNG 296
            L +      +D  G  PLH A   G   + + LL  +   +   D      LH AA  G
Sbjct: 62  -LQHGADVHAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWKFTPLHEAAAKG 119

Query: 297 HANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
              +  + +    +        + +GNTPL L   +   +I  +L
Sbjct: 120 KYEICKLLLQHGADP----TKKNRDGNTPLDLVK-DGDTDIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 58.2 bits (142), Expect = 2e-10
 Identities = 43/200 (21%), Positives = 68/200 (34%), Gaps = 56/200 (28%)

Query: 69  NHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDG 128
           N +++  +  AA+AG+    K                +  R  +   +TPLH A      
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQS--------VNC-RDIEGRQSTPLHFAAGYNRV 55

Query: 129 KMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLH 188
            +         E +                  L H A   +  K    D  G   L  LH
Sbjct: 56  SVV--------EYL------------------LQHGAD--VHAK----DKGG---LVPLH 80

Query: 189 IAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY--- 245
            A        +A++L     ++NV D     PLH AAA G +EI   L      L +   
Sbjct: 81  NACSY-GHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL------LQHGAD 133

Query: 246 --ERDCNGQSPLHLASENGK 263
             +++ +G +PL L  +   
Sbjct: 134 PTKKNRDGNTPLDLVKDGDT 153

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 53.9 bits (131), Expect = 6e-09
 Identities = 32/196 (16%), Positives = 61/196 (31%), Gaps = 49/196 (25%)

Query: 39  DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG-N 97
           D  L  AA+ G    V ++  ++         +  TP+H AA      V +  ++ HG +
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGAD 67

Query: 98  GNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAI 157
            +           +D+ G  PLHNA      ++A  +++     +   +    +PL  A 
Sbjct: 68  VH----------AKDKGGLVPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAA 116

Query: 158 DAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRD 217
             G   I   +++         G +                               ++  
Sbjct: 117 AKGKYEICKLLLQ--------HGAD---------------------------PTKKNRDG 141

Query: 218 RNPLHYAAALGHFEIA 233
             PL      G  +I 
Sbjct: 142 NTPLDLVKD-GDTDIQ 156

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 49.3 bits (119), Expect = 3e-07
 Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 25/125 (20%)

Query: 8   LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVS- 66
           L  A + GD  TV++   +      D+   + T LH AA +   +VV    E    L+  
Sbjct: 12  LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV----EY---LLQH 64

Query: 67  -----VENHKSETPMHVAARAGNFGVAKIFMRPHG-NGNNTGTFDDILRKQDEEGNTPLH 120
                 ++     P+H A   G++ VA++ ++ HG   N            D    TPLH
Sbjct: 65  GADVHAKDKGGLVPLHNACSYGHYEVAELLVK-HGAVVN----------VADLWKFTPLH 113

Query: 121 NAVRK 125
            A  K
Sbjct: 114 EAAAK 118

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 84.0 bits (209), Expect = 2e-19
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLA 244
             L  A  ++      +IL A        D    +PLH AA  GHF     L      L 
Sbjct: 4   KKLLEAA-RAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVL------LR 55

Query: 245 Y-----ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHAN 299
                  R    ++PLH+A+  G  ++++ +L  +   +   D      LH A ++ H  
Sbjct: 56  AGVSRDARTKVDRTPLHMAASEGHANIVE-VLLKHGADVNAKDMLKMTALHWATEHNHQE 114

Query: 300 VV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
           VV + I    ++    ++      T   ++  N + ++  IL
Sbjct: 115 VVELLIKYGADV----HTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 83.6 bits (208), Expect = 3e-19
 Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 17/145 (11%)

Query: 220 PLHYAAALGHFEIACRLSDEDDTLAY----ERDCNGQSPLHLASENGKLSLLKRLLHSYP 275
            L  AA  G  +    L      +A       D  G SPLHLA++ G  S  + LL    
Sbjct: 5   KLLEAARAGQDDEVRIL------MANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLL-RAG 57

Query: 276 DSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHF 334
            S +   K +R  LH+AA  GHAN+V V +    ++    N+ D+   T LH A  +NH 
Sbjct: 58  VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV----NAKDMLKMTALHWATEHNHQ 113

Query: 335 NIVLILARNMRVNIRATNEKKQTAL 359
            +V +L +    ++   ++  +TA 
Sbjct: 114 EVVELLIKY-GADVHTQSKFCKTAF 137

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 66.6 bits (164), Expect = 2e-13
 Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 26/120 (21%)

Query: 250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFL---------DKKNRNILHLAAQNGHANV 300
           +    L  A+  G             D +  L         D    + LHLAAQ GH + 
Sbjct: 1   DLGKKLLEAARAG-----------QDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFST 49

Query: 301 V-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
             V +          ++      TPLH+AA   H NIV +L ++   ++ A +  K TAL
Sbjct: 50  TEVLLRAGVS----RDARTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAKDMLKMTAL 104

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 58.2 bits (142), Expect = 2e-10
 Identities = 34/203 (16%), Positives = 68/203 (33%), Gaps = 60/203 (29%)

Query: 37  NRDTALHIAARFGHKNVVMEILELRPDLVSV-----ENHKSETPMHVAARAGNFGVAKIF 91
           +    L  AAR G  + V     +   L++       +    +P+H+AA+ G+F   ++ 
Sbjct: 1   DLGKKLLEAARAGQDDEV----RI---LMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVL 53

Query: 92  MRPHG-NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQ 150
           +R  G + +           + +   TPLH A  +    +         E++        
Sbjct: 54  LR-AGVSRD----------ARTKVDRTPLHMAASEGHANIV--------EVL-------- 86

Query: 151 SPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLI 210
             L    D          +  K    D      +T LH A    N   + ++L      +
Sbjct: 87  --LKHGAD----------VNAK----DMLK---MTALHWATEH-NHQEVVELLIKYGADV 126

Query: 211 NVLDKRDRNPLHYAAALGHFEIA 233
           +   K  +     +   G+ ++A
Sbjct: 127 HTQSKFCKTAFDISIDNGNEDLA 149

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 84.4 bits (210), Expect = 2e-19
 Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 18/162 (11%)

Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLA 244
             L  A  +   +     L      +N  +   R  L     LG+ EIA RL      L 
Sbjct: 7   NELASAAAR-GDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRL------LL 58

Query: 245 Y-----ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHAN 299
                  +D  G + +H A+  G L  L+ LL  +   +   D +    LHLAA+ GH  
Sbjct: 59  RGANPDLKDRTGFAVIHDAARAGFLDTLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLR 117

Query: 300 VV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
           VV   +       + +   + +G+T   LA +     +V ++
Sbjct: 118 VVEFLVKH--TASN-VGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 80.9 bits (201), Expect = 3e-18
 Identities = 37/163 (22%), Positives = 58/163 (35%), Gaps = 38/163 (23%)

Query: 213 LDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSLL 267
           + +   N L  AAA G  E    L      L        ++  G++ L +          
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSL------LQNNVNVNAQNGFGRTALQVMKLG------ 48

Query: 268 KRLLHSYPDSIEFL----------DKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINS 316
                  P+    L          D+    ++H AA+ G  + +   +    ++    N 
Sbjct: 49  ------NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV----NI 98

Query: 317 SDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
            D EGN PLHLAA   H  +V  L ++   N+   N K  TA 
Sbjct: 99  EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 54.7 bits (133), Expect = 3e-09
 Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 112 DEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACC---- 167
            E     L +A  + D +   ++++ +   +   N  G++ L          +       
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTAL---------QVMKLGNPE 51

Query: 168 IIKEKLSV---LDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYA 224
           I +  L      D +      ++H A     F+   + L   +  +N+ D     PLH A
Sbjct: 52  IARRLLLRGANPDLKDRTGFAVIHDAARA-GFLDTLQTLLEFQADVNIEDNEGNLPLHLA 110

Query: 225 AALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLL 271
           A  GH  +   L     +    R+  G +   LA   G+  ++  + 
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 53.5 bits (130), Expect = 1e-08
 Identities = 34/201 (16%), Positives = 61/201 (30%), Gaps = 49/201 (24%)

Query: 34  MSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMR 93
           M++     L  AA  G    +  +L+   + V+ +N    T + V    GN  +A+  + 
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLL 58

Query: 94  PHG-NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSP 152
             G N +           +D  G   +H+A R        T++    + +   +  G  P
Sbjct: 59  -RGANPD----------LKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLP 106

Query: 153 LSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINV 212
           L LA   G   +      E L  + H   N                           +  
Sbjct: 107 LHLAAKEGHLRVV-----EFL--VKHTASN---------------------------VGH 132

Query: 213 LDKRDRNPLHYAAALGHFEIA 233
            + +       A   G  E+ 
Sbjct: 133 RNHKGDTACDLARLYGRNEVV 153

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 82.5 bits (205), Expect = 4e-19
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 17/136 (12%)

Query: 214 DKRDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLK 268
           + R    LH A+  G       L      L        +D  G +PLH A  +G L +++
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYL------LQNGSDPNVKDHAGWTPLHEACNHGHLKVVE 60

Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHL 327
            LL  +   +     +N + LH AA+NGH ++V + +S         N+ ++ G  P+  
Sbjct: 61  LLL-QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR----NAVNIFGLRPVDY 115

Query: 328 AAINNHFNIVLILARN 343
               +  +++L+  +N
Sbjct: 116 TDDESMKSLLLLPEKN 131

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 71.3 bits (176), Expect = 4e-15
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)

Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVF-IS 305
            +  G++ LH+AS  G +  ++ LL +  D     D      LH A  +GH  VV   + 
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQ 64

Query: 306 KLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
               +    N++  + ++PLH AA N H +IV +L      +  A N      +
Sbjct: 65  HKALV----NTTGYQNDSPLHDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPV 113

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 54.7 bits (133), Expect = 2e-09
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 18/134 (13%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG-NG 98
           T LHIA+  G    V  +L+   D  +V++H   TP+H A   G+  V ++ ++ H    
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALV 69

Query: 99  NNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRK--DPELICYINKAGQSPLSLA 156
           N              + ++PLH+A +     +   ++           +N  G  P+   
Sbjct: 70  N----------TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA---VNIFGLRPVDYT 116

Query: 157 IDAGLTHIACCIIK 170
            D  +  +     K
Sbjct: 117 DDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 37  NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
             D+ LH AA+ GH ++V  +L       +  N     P+          +  +  + + 
Sbjct: 75  QNDSPLHDAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEK-NE 132

Query: 97  NGNNT 101
           + + +
Sbjct: 133 SSSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 48/166 (28%)

Query: 69  NHKSETPMHVAARAGNFGVAKIFMRPHG-NGNNTGTFDDILRKQDEEGNTPLHNAVRKCD 127
           NH+ ET +H+A+  G+    +  ++ +G + N           +D  G TPLH A     
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQ-NGSDPN----------VKDHAGWTPLHEACNHGH 55

Query: 128 GKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLL 187
            K+   +++        +N  G                                 + + L
Sbjct: 56  LKVVELLLQHKAL----VNTTGY-------------------------------QNDSPL 80

Query: 188 HIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIA 233
           H A    +  +  K+L +     N ++     P+ Y        + 
Sbjct: 81  HDAAKNGHVDI-VKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL 125

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 86.2 bits (213), Expect = 7e-19
 Identities = 38/268 (14%), Positives = 83/268 (30%), Gaps = 25/268 (9%)

Query: 111 QDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK 170
           Q  +    L   +     +M  ++             + Q    ++ D+ L  +      
Sbjct: 59  QKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 118

Query: 171 EKLSV---LDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAAL 227
            +L++   +D  G    T LH     +N + + K L          D    + L  A   
Sbjct: 119 TQLNLNIPVDEHG---NTPLHWLTSIAN-LELVKHLVKHGSNRLYGDNMGESCLVKAVKS 174

Query: 228 GHF----EIACRLSDEDDTLAYERDCNGQSPLHLASENGKLS------------LLKRLL 271
            +          L      L    D   ++ LH       ++            L+  ++
Sbjct: 175 VNNYDSGTFEALLDYLYPCLI-LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV 233

Query: 272 HSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAIN 331
                 I+    +  +  +        +++  +     I +M+N+ D  G+T L++AA  
Sbjct: 234 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 293

Query: 332 NHFNIVLILARNMRVNIRATNEKKQTAL 359
            + +IV  L      +    N+     +
Sbjct: 294 GNISIVDALLDY-GADPFIANKSGLRPV 320

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 74.3 bits (182), Expect = 8e-15
 Identities = 35/249 (14%), Positives = 80/249 (32%), Gaps = 50/249 (20%)

Query: 23  SARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARA 82
           + +LN N  +D  ++ +T LH      +  +V  +++   +     ++  E+ +  A ++
Sbjct: 118 NTQLNLNIPVD--EHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKS 174

Query: 83  GNFGVAKIF---MRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDP 139
            N   +  F   +                  +D    T LH+ +                
Sbjct: 175 VNNYDSGTFEALLDYLYPCLIL---------EDSMNRTILHHIIIT-------------- 211

Query: 140 ELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVM 199
                   +G +  S A    L  +   I+K++   +        +  +    +    ++
Sbjct: 212 --------SGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSIL 263

Query: 200 AKI--LEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQ 252
             +       +++N  D      L+ AA LG+  I   L      L Y       + +G 
Sbjct: 264 ENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL------LDYGADPFIANKSGL 317

Query: 253 SPLHLASEN 261
            P+   +  
Sbjct: 318 RPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 70.1 bits (171), Expect = 2e-13
 Identities = 43/280 (15%), Positives = 89/280 (31%), Gaps = 28/280 (10%)

Query: 33  DMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFM 92
           +     +  L        + +   +     +  S     ++   HV+  +    V   F 
Sbjct: 58  EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFP 117

Query: 93  RPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSP 152
                        ++    DE GNTPLH      + ++   +++       Y +  G+S 
Sbjct: 118 -NTQ--------LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESC 167

Query: 153 LSLAIDAGLTHIACC---IIKEKLSVLDHRGPNDLTLLHIAIIKSNF------------V 197
           L  A+ +   + +     ++      L      + T+LH  II S              +
Sbjct: 168 LVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI 227

Query: 198 VMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY--ERDCNGQSPL 255
           +M  I++ +   I        +  +         I   L  +         +D NG + L
Sbjct: 228 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL 287

Query: 256 HLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQN 295
           ++A+  G +S++  LL    D     +K     +   A  
Sbjct: 288 NIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 22/156 (14%), Positives = 48/156 (30%), Gaps = 24/156 (15%)

Query: 16  DAATVRESARLNGNGILDMSQNRDTALHIAA------------RFGHKNVVMEILELRPD 63
           D+ T           ++       T LH               ++    ++  I++ +  
Sbjct: 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR 238

Query: 64  LVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAV 123
            +    ++ E+  +         + +         N        L  QD  G+T L+ A 
Sbjct: 239 PIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM-------LNAQDSNGDTCLNIAA 291

Query: 124 RKCDGKMAFTMIRK--DPELICYINKAGQSPLSLAI 157
           R  +  +   ++    DP +    NK+G  P+    
Sbjct: 292 RLGNISIVDALLDYGADPFI---ANKSGLRPVDFGA 324

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 79.7 bits (198), Expect = 3e-18
 Identities = 51/126 (40%), Positives = 69/126 (54%), Gaps = 15/126 (11%)

Query: 220 PLHYAAALGHFEIACRL----SDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYP 275
           PLH AA  GH E+   L    +D +      +D NG++PLHLA+ NG L ++K LL    
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHLAARNGHLEVVKLLL-EAG 58

Query: 276 DSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHF 334
             +   DK  R  LHLAA+NGH  VV + +    ++    N+ D  G TPLHLAA N H 
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV----NAKDKNGRTPLHLAARNGHL 114

Query: 335 NIVLIL 340
            +V +L
Sbjct: 115 EVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 51.6 bits (125), Expect = 2e-08
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 13/87 (14%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG-NG 98
           T LH+AAR GH  VV  +LE   D V+ ++    TP+H+AAR G+  V K+ +   G + 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADV 61

Query: 99  NNTGTFDDILRKQDEEGNTPLHNAVRK 125
           N           +D+ G TPLH A R 
Sbjct: 62  N----------AKDKNGRTPLHLAARN 78

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 49.3 bits (119), Expect = 1e-07
 Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 13/90 (14%)

Query: 37  NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
           N  T LH+AAR GH  VV  +LE   D V+ ++    TP+H+AAR G+  V K+ +   G
Sbjct: 34  NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE-AG 91

Query: 97  -NGNNTGTFDDILRKQDEEGNTPLHNAVRK 125
            + N           +D+ G TPLH A R 
Sbjct: 92  ADVN----------AKDKNGRTPLHLAARN 111

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 41.9 bits (100), Expect = 4e-05
 Identities = 45/165 (27%), Positives = 64/165 (38%), Gaps = 53/165 (32%)

Query: 115 GNTPLHNAVRKCDGKMAFTMIRKDPELICYINKA---GQSPLSLAIDAGLTHIACCIIKE 171
           G TPLH A R    ++   ++         +N     G++PL         H+A      
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAG----ADVNAKDKNGRTPL---------HLAA----- 43

Query: 172 KLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFE 231
                   G       H+ +         K+L      +N  DK  R PLH AA  GH E
Sbjct: 44  ------RNG-------HLEV--------VKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82

Query: 232 IACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLKRLL 271
           +   L      L        +D NG++PLHLA+ NG L ++K LL
Sbjct: 83  VVKLL------LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 40.8 bits (97), Expect = 1e-04
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKI 90
           T LH+AAR GH  VV  +LE   D V+ ++    TP+H+AAR G+  V K+
Sbjct: 70  TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKL 119

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 40.0 bits (95), Expect = 2e-04
 Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 54/165 (32%)

Query: 73  ETPMHVAARAGNFGVAKIFMRPHG-NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMA 131
            TP+H+AAR G+  V K+ +   G + N           +D+ G TPLH A R    ++ 
Sbjct: 3   RTPLHLAARNGHLEVVKLLLE-AGADVN----------AKDKNGRTPLHLAARNGHLEVV 51

Query: 132 FTMIRKDPELICYINKA---GQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLH 188
             ++    +    +N     G++PL         H+A              G       H
Sbjct: 52  KLLLEAGAD----VNAKDKNGRTPL---------HLAA-----------RNG-------H 80

Query: 189 IAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIA 233
           + ++K        +LEA  D +N  DK  R PLH AA  GH E+ 
Sbjct: 81  LEVVKL-------LLEAGAD-VNAKDKNGRTPLHLAARNGHLEVV 117

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 38.1 bits (90), Expect = 9e-04
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 321 GNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
           G TPLHLAA N H  +V +L      ++ A ++  +T L
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPL 39

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 82.9 bits (205), Expect = 3e-18
 Identities = 39/282 (13%), Positives = 68/282 (24%), Gaps = 60/282 (21%)

Query: 74  TPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKC---DGKM 130
             +      G        +      +   T  D    +   G T L  AV          
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLT--DSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 131 AFTMIRKDPEL----------ICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRG 180
              +++ D +                  G S L +AI+         +++    V   R 
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRA 120

Query: 181 PNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDED 240
                  H                               PL  AA    +++   L +  
Sbjct: 121 CGRFFQKHQG---------------------TCFYFGELPLSLAACTKQWDVVTYLLENP 159

Query: 241 DTLAY--ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHA 298
              A     D  G + LH                         +    + L +   +G  
Sbjct: 160 HQPASLEATDSLGNTVLHALVMIAD------------------NSPENSALVIHMYDGLL 201

Query: 299 NVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
            +    ++L     +   S+ +G TPL LAA      I   +
Sbjct: 202 QMG---ARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 78.3 bits (193), Expect = 2e-16
 Identities = 43/289 (14%), Positives = 88/289 (30%), Gaps = 72/289 (24%)

Query: 6   RVLFRALRRGDAATVR---ESARLNGNGILDMSQNRD----TALHIAA---RFGHKNVVM 55
             LF  + RG    +    E  R N   + D +        T L  A    + G    +M
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 56  EILELRPDL----------VSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFD 105
            +L++  D            + E ++  + +H+A    +    K+ +    + +      
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH------ 117

Query: 106 DILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIA 165
                +        H                            G+ PLSLA       + 
Sbjct: 118 ----LRACGRFFQKHQGTC---------------------FYFGELPLSLAACTKQWDVV 152

Query: 166 CCIIKEKLSV--LDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHY 223
             +++       L+       T+LH  ++ ++                  +  + + L  
Sbjct: 153 TYLLENPHQPASLEATDSLGNTVLHALVMIAD------------------NSPENSALVI 194

Query: 224 AAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLH 272
               G  ++  RL      L    +  G +PL LA++ GK+ + + +L 
Sbjct: 195 HMYDGLLQMGARL-CPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 58.6 bits (142), Expect = 6e-10
 Identities = 26/148 (17%), Positives = 42/148 (28%), Gaps = 37/148 (25%)

Query: 217 DRNPLHYAAALGHFEI-------ACRLSDEDDTLAYERDCNGQSPLHLA---SENGKLSL 266
           DR+ L    + G  E            S      AY     G++ L  A    ++G  + 
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 267 LKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLH 326
           +  LL    DS       N                                  +G++ LH
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQC--------------------------TDEFYQGHSALH 95

Query: 327 LAAINNHFNIV-LILARNMRVNIRATNE 353
           +A        V L++     V++RA   
Sbjct: 96  IAIEKRSLQCVKLLVENGADVHLRACGR 123

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 39  DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNG 98
           ++AL I    G   +   +         + NH+  TP+ +AA+ G   + +  ++   +G
Sbjct: 189 NSALVIHMYDGLLQMGARLCPTVQL-EEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247

Query: 99  NNTGTFDD 106
                   
Sbjct: 248 AAAHHHHH 255

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 79.0 bits (196), Expect = 7e-18
 Identities = 29/138 (21%), Positives = 47/138 (34%), Gaps = 19/138 (13%)

Query: 210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKL 264
           I++L       L  AAA G  E   +L      L         +  G+ P+ +    G  
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQL------LEAGADPNALNRFGRRPIQVMM-MGSA 57

Query: 265 SLLKRLLHSYPDSIEFLDKKNRNI-LHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGN 322
            + + LL    +     D       +H AA+ G  + + V       +    +  D  G 
Sbjct: 58  QVAELLLLHGAE-PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL----DVCDAWGR 112

Query: 323 TPLHLAAINNHFNIVLIL 340
            P+ LA    H +I   L
Sbjct: 113 LPVDLAEEQGHRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 49.0 bits (118), Expect = 2e-07
 Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 15/132 (11%)

Query: 146 NKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEA 205
             +  + L+ A   G       +++      +         + + +       +A++L  
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMM--MGSAQVAELLLL 65

Query: 206 KRDLINVLDKRDR-NPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLAS 259
                N  D      P+H AA  G  +    L                D  G+ P+ LA 
Sbjct: 66  HGAEPNCADPATLTRPVHDAAREGFLDTLVVL------HRAGARLDVCDAWGRLPVDLAE 119

Query: 260 ENGKLSLLKRLL 271
           E G   + + L 
Sbjct: 120 EQGHRDIARYLH 131

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 46.7 bits (112), Expect = 1e-06
 Identities = 26/114 (22%), Positives = 37/114 (32%), Gaps = 28/114 (24%)

Query: 37  NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
           + D  L  AA  G    V ++LE   D  +  N     P+ V    G+  VA++ +  HG
Sbjct: 11  SSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLL-HG 67

Query: 97  -----NGNNTGT----------FDDILR----------KQDEEGNTPLHNAVRK 125
                    T T          F D L             D  G  P+  A  +
Sbjct: 68  AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ 121

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKI 90
             +H AAR G  + ++ +       + V +     P+ +A   G+  +A+ 
Sbjct: 80  RPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARY 129

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 38.6 bits (91), Expect = 8e-04
 Identities = 25/170 (14%), Positives = 47/170 (27%), Gaps = 48/170 (28%)

Query: 65  VSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVR 124
           + +    S+  +  AA  G     +  +    + N            +  G  P+   + 
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN----------ALNRFGRRPIQVMMM 54

Query: 125 KCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDL 184
                                              G   +A  ++       +   P  L
Sbjct: 55  -----------------------------------GSAQVAELLLLHGAEP-NCADPATL 78

Query: 185 TL-LHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIA 233
           T  +H A  +  F+    +L      ++V D   R P+  A   GH +IA
Sbjct: 79  TRPVHDAARE-GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIA 127

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 80.7 bits (200), Expect = 1e-17
 Identities = 33/226 (14%), Positives = 63/226 (27%), Gaps = 29/226 (12%)

Query: 149 GQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRD 208
           GQ  L       L       I   + V     P  L LL  +        + + +  + D
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSS-LEGEFDLVQRIIYEVD 61

Query: 209 LINVLDKRDRNPLHYAAALGHFEIACRL----SDEDDTLAYERDCNGQSPLHLASENGKL 264
             ++ +      LH A   GH EI   L     + +       D +G +PLH A+    +
Sbjct: 62  DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-----AADSDGWTPLHCAASCNNV 116

Query: 265 SLLKRLLHSYPDSIEFLDKKNRN------ILHLAAQNGHANVV-VFISKLPEIEDMINSS 317
            + K L+ S       +     +            + G+            +    +   
Sbjct: 117 QVCKFLVESGAA----VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK----MGIM 168

Query: 318 DLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQ 363
           +      L      N     L +     + I    ++ +      +
Sbjct: 169 NKGVIYALWDYEPQND--DELPMKEGDCMTIIHREDEDEIEWWWAR 212

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 80.4 bits (199), Expect = 2e-17
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 12/151 (7%)

Query: 214 DKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLH 272
           +   +  L         +    R++        + +    + L  +S  G+  L++R++ 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRV---KFNPLPLALLLDSSLEGEFDLVQRII- 57

Query: 273 SYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAIN 331
              D     + +    LH A   GH  +V   +     +    N++D +G TPLH AA  
Sbjct: 58  YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV----NAADSDGWTPLHCAASC 113

Query: 332 NHFNIVLILARNMRVNIRATNEK-KQTALAI 361
           N+  +   L  +    + A      QTA   
Sbjct: 114 NNVQVCKFLVES-GAAVFAMTYSDMQTAADK 143

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 76.1 bits (188), Expect = 6e-16
 Identities = 28/229 (12%), Positives = 72/229 (31%), Gaps = 24/229 (10%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN 99
            +L    R   +    E +     +           +  ++  G F + +  +      +
Sbjct: 7   VSLPPGKRTNLRKTGSERIAHGMRVKFNPLP--LALLLDSSLEGEFDLVQRII---YEVD 61

Query: 100 NTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKA---GQSPLSLA 156
           +           ++EG T LHNAV     ++   +++        +N A   G +PL  A
Sbjct: 62  D-------PSLPNDEGITALHNAVCAGHTEIVKFLVQFG----VNVNAADSDGWTPLHCA 110

Query: 157 IDAGLTHIACCIIKE--KLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLD 214
                  +   +++    +  + +            + +  +   ++ L   ++ + +++
Sbjct: 111 ASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEE-GYTQCSQFLYGVQEKMGIMN 169

Query: 215 KRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGK 263
           K     L         E+   + + D      R+   +     A  N K
Sbjct: 170 KGVIYALWDYEPQNDDELP--MKEGDCMTIIHREDEDEIEWWWARLNDK 216

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 80.3 bits (199), Expect = 2e-17
 Identities = 36/329 (10%), Positives = 72/329 (21%), Gaps = 104/329 (31%)

Query: 39  DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNG 98
           +    I +R   +                          +  + G+              
Sbjct: 2   EVNKIIGSRTAGEGA--------------------MEYLIEWKDGHSPSWVPS---SYIA 38

Query: 99  NNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRK-DPELICYINKAGQSPLSLAI 157
            +             E  TP   A RK D +    ++   D   +  +++ G++ L    
Sbjct: 39  ADV----------VSEYETPWWTAARKADEQALSQLLEDRD---VDAVDENGRTAL---- 81

Query: 158 DAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRD 217
                                                      ++L      ++  D R 
Sbjct: 82  -----LFVA--------------------------GLGSDKCVRLLAEAGADLDHRDMRG 110

Query: 218 -RNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLKRLL 271
               LH AA     E+   L      +         D  G + L LA E  K +     +
Sbjct: 111 GLTALHMAAGYVRPEVVEAL------VELGADIEVEDERGLTALELAREILKTTPKGNPM 164

Query: 272 HSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAIN 331
                    +  +    +       +A V             I     +G    +L    
Sbjct: 165 QFGRR----IGLEKVINVLEGQVFEYAEVD-----------EIVEKRGKGKDVEYLVRWK 209

Query: 332 NHFNIVLILARNMRVNIRATNEK-KQTAL 359
           +  +   +   +          K  +  L
Sbjct: 210 DGGDCEWVKGVH-VAED---VAKDYEDGL 234

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 79.2 bits (196), Expect = 7e-17
 Identities = 36/226 (15%), Positives = 59/226 (26%), Gaps = 30/226 (13%)

Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLA 244
               I   K                +         P   AA     +   +L ++ D   
Sbjct: 17  MEYLIEW-KDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLLEDRD--V 70

Query: 245 YERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNI-LHLAAQNGHANVV-V 302
              D NG++ L   +  G    ++ L       ++  D +     LH+AA      VV  
Sbjct: 71  DAVDENGRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129

Query: 303 FISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL---ARNMRVNIRATNEKKQTAL 359
            +    +I       D  G T L LA                R +         +K   +
Sbjct: 130 LVELGADI----EVEDERGLTALELAREILKTTPKGNPMQFGRRI-------GLEKVINV 178

Query: 360 AIVQPSLHQN--DILEGHGGSASGTGTTTTDLIAGPKNEDMAQNLL 403
              Q   +    +I+E       G G     L+      D      
Sbjct: 179 LEGQVFEYAEVDEIVEKR-----GKGKDVEYLVRWKDGGDCEWVKG 219

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 43/315 (13%), Positives = 75/315 (23%), Gaps = 86/315 (27%)

Query: 24  ARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG 83
           +R  G G             I  + GH    +    +  D+      + ETP   AAR  
Sbjct: 9   SRTAGEGA--------MEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKA 56

Query: 84  NFGVAKIFMRPHG-NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELI 142
           +       +     + +            DE G T L                       
Sbjct: 57  DEQALSQLL--EDRDVD----------AVDENGRTALLFVAGL----------------- 87

Query: 143 CYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPND-LTLLHIAIIKSNFVVMAK 201
                            G       + +    + DHR     LT LH+A        + +
Sbjct: 88  -----------------GSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGY-VRPEVVE 128

Query: 202 ILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQS--PLHLAS 259
            L      I V D+R    L  A  +               + + R    +    +    
Sbjct: 129 ALVELGADIEVEDERGLTALELAREILKTTPKGNP------MQFGRRIGLEKVINVLEGQ 182

Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVF-ISKLPEIEDMINSSD 318
                       ++  D I     K +++ +L       +        + E      + D
Sbjct: 183 VFE---------YAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE----DVAKD 229

Query: 319 LEGNTPLHLAAINNH 333
                 L  A   + 
Sbjct: 230 --YEDGLEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 34/265 (12%), Positives = 76/265 (28%), Gaps = 48/265 (18%)

Query: 8   LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSV 67
                + G + +       +     D+    +T    AAR   +  + ++LE   D V  
Sbjct: 19  YLIEWKDGHSPSWV---PSSYIAA-DVVSEYETPWWTAARKADEQALSQLLE-DRD-VDA 72

Query: 68  ENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCD 127
            +    T +   A  G+    ++     G         D+  +    G T LH A     
Sbjct: 73  VDENGRTALLFVAGLGSDKCVRLLAE-AGA--------DLDHRDMRGGLTALHMAAGYVR 123

Query: 128 GKMAFTMIRK--DPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPN--- 182
            ++   ++    D E+    ++ G + L LA +   T                 G     
Sbjct: 124 PEVVEALVELGADIEV---EDERGLTALELAREILKTTPK--------GNPMQFGRRIGL 172

Query: 183 -DLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDE-- 239
             +  +    +   +  + +I+E           + ++  +        +          
Sbjct: 173 EKVINVLEGQVF-EYAEVDEIVEK--------RGKGKDVEYLVRWKDGGDCEWVKGVHVA 223

Query: 240 DDTLAYERDCNGQSPLHLASENGKL 264
           +D     +D   +  L  A     +
Sbjct: 224 EDV---AKD--YEDGLEYAVAESVI 243

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 76.7 bits (190), Expect = 7e-17
 Identities = 30/160 (18%), Positives = 50/160 (31%), Gaps = 25/160 (15%)

Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLA 244
             L  A  +   V   + L       N  +   R P+     +G   +A  L      L 
Sbjct: 14  DWLATAAAR-GRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELL------LL 65

Query: 245 Y-----ERDCNGQ-SPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHA 298
           +       D      P+H A+  G L  L  +LH     ++  D   R  + LA + GH 
Sbjct: 66  HGAEPNCADPATLTRPVHDAAREGFLDTLV-VLHRAGARLDVRDAWGRLPVDLAEELGHR 124

Query: 299 NVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIV 337
           +V     +          +    G+    + A     +I 
Sbjct: 125 DVARYLRAA---------AGGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 72.5 bits (179), Expect = 2e-15
 Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 19/138 (13%)

Query: 210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKL 264
                +   + L  AAA G  E    L      L         +  G+ P+ +    G  
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRAL------LEAGANPNAPNSYGRRPIQVMM-MGSA 57

Query: 265 SLLKRLLHSYPDSIEFLDKKNRNI-LHLAAQNGHANVVVF-ISKLPEIEDMINSSDLEGN 322
            + + LL  +       D       +H AA+ G  + +V        +    +  D  G 
Sbjct: 58  RVAELLL-LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL----DVRDAWGR 112

Query: 323 TPLHLAAINNHFNIVLIL 340
            P+ LA    H ++   L
Sbjct: 113 LPVDLAEELGHRDVARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 61.0 bits (149), Expect = 2e-11
 Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 31/167 (18%)

Query: 146 NKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEA 205
            +     L+ A   G       +++   +  +         + + +       +A++L  
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM--MGSARVAELLLL 65

Query: 206 KRDLINVLDKRDR-NPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLAS 259
                N  D      P+H AA  G  +    L               RD  G+ P+ LA 
Sbjct: 66  HGAEPNCADPATLTRPVHDAAREGFLDTLVVL------HRAGARLDVRDAWGRLPVDLAE 119

Query: 260 ENGKLSLLKRLLHSYPDSIEFL-----DKKNRNILHLAAQNGHANVV 301
           E G             D   +L       +  N   + A  G +++ 
Sbjct: 120 ELGHR-----------DVARYLRAAAGGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 50.6 bits (122), Expect = 9e-08
 Identities = 30/197 (15%), Positives = 52/197 (26%), Gaps = 54/197 (27%)

Query: 67  VENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKC 126
                S   +  AA  G     +  +    N N            +  G  P+   +   
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRALLEAGANPN----------APNSYGRRPIQVMMM-- 54

Query: 127 DGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTL 186
                                            G   +A  ++       +   P  LT 
Sbjct: 55  ---------------------------------GSARVAELLLLHGAEP-NCADPATLTR 80

Query: 187 -LHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY 245
            +H A  +  F+    +L      ++V D   R P+  A  LGH ++A  L       A 
Sbjct: 81  PVHDA-AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL------RAA 133

Query: 246 ERDCNGQSPLHLASENG 262
                G +   + +  G
Sbjct: 134 AGGTRGSNHARIDAAEG 150

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 38/199 (19%), Positives = 59/199 (29%), Gaps = 60/199 (30%)

Query: 39  DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG-N 97
              L  AA  G    V  +LE   +  +  N     P+ V    G+  VA++ +  HG  
Sbjct: 13  ADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMMM-GSARVAELLLL-HGAE 69

Query: 98  GNNTGTFDDILRKQDEEGNT-PLHNAVRKCDGKMAFTMIRK--DPELICYINKAGQSPLS 154
            N            D    T P+H+A R+        + R     ++    +  G+ P+ 
Sbjct: 70  PN----------CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV---RDAWGRLPVD 116

Query: 155 LAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLD 214
           LA + G                           H  +        A+ L A         
Sbjct: 117 LAEELG---------------------------HRDV--------ARYLRAAAG-----G 136

Query: 215 KRDRNPLHYAAALGHFEIA 233
            R  N     AA G  +I 
Sbjct: 137 TRGSNHARIDAAEGPSDIP 155

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 77.2 bits (191), Expect = 9e-17
 Identities = 28/158 (17%), Positives = 45/158 (28%), Gaps = 13/158 (8%)

Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLA 244
               I   K                +         P   AA     +   +L ++ D   
Sbjct: 16  MEYLIEW-KDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLLEDRD--V 69

Query: 245 YERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNI-LHLAAQNGHANVV-V 302
              D NG++ L   +  G    ++ L  +  D ++  D +     LH+AA      VV  
Sbjct: 70  DAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAGYVRPEVVEA 128

Query: 303 FISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
            +    +I       D  G T L LA            
Sbjct: 129 LVELGADI----EVEDERGLTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 64.8 bits (159), Expect = 2e-12
 Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 12/112 (10%)

Query: 250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPE 309
            G     +  ++G         +   D    +  +       AA+      +  +     
Sbjct: 13  EGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKADEQALSQL----- 63

Query: 310 IEDM-INSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEK-KQTAL 359
           +ED  +++ D  G T L   A       V +LA     ++   + +   TAL
Sbjct: 64  LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTAL 114

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 58.7 bits (143), Expect = 3e-10
 Identities = 31/221 (14%), Positives = 56/221 (25%), Gaps = 64/221 (28%)

Query: 59  ELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTP 118
           E+   + S    +      +  + G+               +             E  TP
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPS---SYIAADV----------VSEYETP 47

Query: 119 LHNAVRKCDGKMAFTMIRK-DPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLD 177
              A RK D +    ++   D   +  +++ G++ L      G            L   +
Sbjct: 48  WWTAARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKCV-----RLL--AE 97

Query: 178 HRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRD-RNPLHYAAALGHFEIACRL 236
             G +                           ++  D R     LH AA     E+   L
Sbjct: 98  A-GAD---------------------------LDHRDMRGGLTALHMAAGYVRPEVVEAL 129

Query: 237 SDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLKRLLH 272
                 +         D  G + L LA E  K +     + 
Sbjct: 130 ------VELGADIEVEDERGLTALELAREILKTTPKGNPMQ 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 53.3 bits (129), Expect = 1e-08
 Identities = 34/213 (15%), Positives = 51/213 (23%), Gaps = 62/213 (29%)

Query: 23  SARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARA 82
            +R  G G             I  + GH    +    +  D       + ETP   AAR 
Sbjct: 7   GSRTAGEG--------AMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARK 54

Query: 83  GNFGVAKIFMRPHG-NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPEL 141
            +       +     + +            DE G T L                      
Sbjct: 55  ADEQALSQLL--EDRDVD----------AVDENGRTALLFVAGL---------------- 86

Query: 142 ICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPND-LTLLHIAIIKSNFVVMA 200
                             G       + +    + DHR     LT LH+A        + 
Sbjct: 87  ------------------GSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGY-VRPEVV 126

Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA 233
           + L      I V D+R    L  A  +      
Sbjct: 127 EALVELGADIEVEDERGLTALELAREILKTTPK 159

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 52.5 bits (127), Expect = 3e-08
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 20/160 (12%)

Query: 8   LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSV 67
                + G + +       +     D+    +T    AAR   +  + ++LE   D V  
Sbjct: 18  YLIEWKDGHSPSWV---PSSYIAA-DVVSEYETPWWTAARKADEQALSQLLE-DRD-VDA 71

Query: 68  ENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCD 127
            +    T +   A  G+    ++     G         D+  +    G T LH A     
Sbjct: 72  VDENGRTALLFVAGLGSDKCVRLLAE-AGA--------DLDHRDMRGGLTALHMAAGYVR 122

Query: 128 GKMAFTMIRK--DPELICYINKAGQSPLSLAIDAGLTHIA 165
            ++   ++    D E+    ++ G + L LA +   T   
Sbjct: 123 PEVVEALVELGADIEV---EDERGLTALELAREILKTTPK 159

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 35  SQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKI 90
            +   TALH+AA +    VV  ++EL  D + VE+ +  T + +A           
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKTTPKGN 161

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 74.3 bits (184), Expect = 2e-16
 Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 7/111 (6%)

Query: 250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLP 308
           +G +PLH A++NG    +K+LL    D +    K     LHLAA+NGHA +V + ++K  
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66

Query: 309 EIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
           ++    N+   +GNTP HLA  N H  IV +L      ++ A +       
Sbjct: 67  DV----NARSKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 64.3 bits (158), Expect = 6e-13
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 15/122 (12%)

Query: 210 INVLDKRDRNPLHYAAALGHFEIACRL----SDEDDTLAYERDCNGQSPLHLASENGKLS 265
                K    PLH AA  GH E   +L    +D +      R  +G +PLHLA++NG   
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-----ARSKDGNTPLHLAAKNGHAE 56

Query: 266 LLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTP 324
           ++K LL +    +    K      HLA +NGH  +V +  +K  +    +N+     +  
Sbjct: 57  IVKLLL-AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD----VNARSWGSSHH 111

Query: 325 LH 326
            H
Sbjct: 112 HH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 55.8 bits (136), Expect = 5e-10
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 282 DKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
            K     LH AA+NGHA  V   +SK  ++    N+   +GNTPLHLAA N H  IV +L
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADV----NARSKDGNTPLHLAAKNGHAEIVKLL 61

Query: 341 ARNMRVNIRATNEKKQTAL 359
                 ++ A ++   T  
Sbjct: 62  LAK-GADVNARSKDGNTPE 79

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 50.5 bits (122), Expect = 3e-08
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 13/87 (14%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG-NG 98
           T LH AA+ GH   V ++L    D V+  +    TP+H+AA+ G+  + K+ +   G + 
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLA-KGADV 68

Query: 99  NNTGTFDDILRKQDEEGNTPLHNAVRK 125
           N           + ++GNTP H A + 
Sbjct: 69  N----------ARSKDGNTPEHLAKKN 85

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 48.1 bits (116), Expect = 3e-07
 Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRL----SDED 240
           T LH A  K+      K L +K   +N   K    PLH AA  GH EI   L    +D +
Sbjct: 11  TPLHNAA-KNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69

Query: 241 DTLAYERDCNGQSPLHLASENGKLSLLKRLL 271
                 R  +G +P HLA +NG   ++K L 
Sbjct: 70  -----ARSKDGNTPEHLAKKNGHHEIVKLLD 95

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 47.4 bits (114), Expect = 5e-07
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 13/85 (15%)

Query: 37  NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
           + +T LH+AA+ GH  +V  +L    D V+  +    TP H+A + G+  + K+     G
Sbjct: 41  DGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHLAKKNGHHEIVKLLDA-KG 98

Query: 97  -NGNNTGTFDDILRKQDEEGNTPLH 120
            + N           +    +   H
Sbjct: 99  ADVN----------ARSWGSSHHHH 113

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 78.8 bits (194), Expect = 4e-16
 Identities = 37/312 (11%), Positives = 79/312 (25%), Gaps = 77/312 (24%)

Query: 35  SQNRDTALHIAARFGHKNVVMEILELRPDLVSVENH-KSETPMHVAARAGNFGVAKIFMR 93
                 A  +AA  GH +V+  + EL P  +      ++     +AA  G+  V      
Sbjct: 125 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE 184

Query: 94  PHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPL 153
                               E       A                               
Sbjct: 185 LAPTEATA--------MIQAENYYAFRWA------------------------------- 205

Query: 154 SLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVL 213
             A+  G  ++   ++ +   +L +   ++       +           +    + +  +
Sbjct: 206 --AVGRGHHNVINFLL-DCPVMLAYAEIHEFEYGEKYVNPF--------IARHVNRLKEM 254

Query: 214 DKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLK--RLL 271
                +    +   G F++          +       G   L          LL   R L
Sbjct: 255 H----DAFKLSNPDGVFDL----------VTKSECLQGFYMLRNLIRRNDEVLLDDIRFL 300

Query: 272 HSYPD-----SIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL-----EG 321
            S P          +      +L LA + G+      +  +P +  +  +++       G
Sbjct: 301 LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGG 360

Query: 322 NTPLHLAAINNH 333
              L   A+ +H
Sbjct: 361 RLDLRAVALEHH 372

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 74.6 bits (183), Expect = 9e-15
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 7/175 (4%)

Query: 170 KEKLSVLDHRGPN-DLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALG 228
           KE + +      N +     + +  +++   AK L +      +  +             
Sbjct: 47  KEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSS 106

Query: 229 HFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPD-SIEFLDKKNRN 287
             +  C L   D+ +             LA+ENG L +L RL    P   +  +  +N +
Sbjct: 107 ALDTLCLLLTSDEIVK-VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYH 165

Query: 288 ILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINN-HFNIVLIL 340
              LAA+NGH +V+       P     +  ++         AA+   H N++  L
Sbjct: 166 AFRLAAENGHLHVLNRLCELAPTEATAMIQAE--NYYAFRWAAVGRGHHNVINFL 218

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 65.7 bits (160), Expect = 7e-12
 Identities = 30/248 (12%), Positives = 60/248 (24%), Gaps = 45/248 (18%)

Query: 33  DMSQNRDTALHIAARFGHKNVVMEILELRPDLVS--VENHKSETPMHVAARAGNFGVAKI 90
            +      A  +AA  GH +V+  + EL P   +  ++          A   G+  V   
Sbjct: 158 MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINF 217

Query: 91  FMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQ 150
            +                   +          V     +                 K   
Sbjct: 218 LLDCPVMLA----------YAEIHEFEYGEKYVNPFIARHV------------NRLKEMH 255

Query: 151 SPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVM--AKILEAKRD 208
               L+   G+  +          V          +L   I +++ V++   + L +   
Sbjct: 256 DAFKLSNPDGVFDL----------VTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPG 305

Query: 209 L-----INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGK 263
           +        +       L  A  LG+      L                +  ++    G+
Sbjct: 306 IKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSV----LALTKANNYYINETGGR 361

Query: 264 LSLLKRLL 271
           L L    L
Sbjct: 362 LDLRAVAL 369

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 4/109 (3%)

Query: 252 QSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIE 311
           Q    L       +   + L S          K+  I  +AA  G ++ +  +  L   +
Sbjct: 62  QVRQLLCLYYAHYNRNAKQLWSDAHKK---GIKSEVICFVAAITGCSSALDTLCLLLTSD 118

Query: 312 DMINSSDLEGNTPLHLAAINNHFNIV-LILARNMRVNIRATNEKKQTAL 359
           +++     E      LAA N H +++  +        +     +   A 
Sbjct: 119 EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF 167

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 73.6 bits (182), Expect = 5e-16
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 17/127 (13%)

Query: 220 PLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLKRLLHSY 274
            L  AA  G  +    L      +A       +D  G +PL+LA+ +G L +++ LL   
Sbjct: 17  KLLEAARAGQDDEVRIL------MANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL-KN 69

Query: 275 PDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNH 333
              +  +D      LHLAA  GH  +  V +    ++    N+ D  G T   ++  N +
Sbjct: 70  GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV----NAQDKFGKTAFDISIGNGN 125

Query: 334 FNIVLIL 340
            ++  IL
Sbjct: 126 EDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 65.5 bits (161), Expect = 3e-13
 Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 7/111 (6%)

Query: 250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLP 308
           +    L  A+  G+   ++ L+ +    +   D+     L+LA  +GH  +V V +    
Sbjct: 13  DLGKKLLEAARAGQDDEVRILM-ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71

Query: 309 EIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
           +    +N+ D  G TPLHLAA   H  I  +L ++   ++ A ++  +TA 
Sbjct: 72  D----VNAVDAIGFTPLHLAAFIGHLEIAEVLLKH-GADVNAQDKFGKTAF 117

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 55.5 bits (135), Expect = 1e-09
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 279 EFLDKKNRNI---LHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINNHF 334
                   ++   L  AA+ G  + V + ++   ++    N+ D  G TPL+LA  + H 
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADV----NAKDEYGLTPLYLATAHGHL 60

Query: 335 NIVLILARNMRVNIRATNEKKQTAL 359
            IV +L +N   ++ A +    T L
Sbjct: 61  EIVEVLLKN-GADVNAVDAIGFTPL 84

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 47.0 bits (113), Expect = 1e-06
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 13/90 (14%)

Query: 37  NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
           +    L  AAR G  + V  ++    D V+ ++    TP+++A   G+  + ++ ++ +G
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLK-NG 70

Query: 97  -NGNNTGTFDDILRKQDEEGNTPLHNAVRK 125
            + N            D  G TPLH A   
Sbjct: 71  ADVN----------AVDAIGFTPLHLAAFI 90

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 12/95 (12%)

Query: 182 NDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDD 241
             LT L++A      + + ++L      +N +D     PLH AA +GH EIA  L     
Sbjct: 46  YGLTPLYLATAH-GHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVL----- 99

Query: 242 TLAY-----ERDCNGQSPLHLASENGKLSLLKRLL 271
            L +      +D  G++   ++  NG   L + L 
Sbjct: 100 -LKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 45.8 bits (110), Expect = 3e-06
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 25/96 (26%)

Query: 37  NRDTALHIAARFGHKNVVMEILELRPDLVS------VENHKSETPMHVAARAGNFGVAKI 90
              T L++A   GH     EI+E+   L+         +    TP+H+AA  G+  +A++
Sbjct: 46  YGLTPLYLATAHGHL----EIVEV---LLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEV 98

Query: 91  FMRPHG-NGNNTGTFDDILRKQDEEGNTPLHNAVRK 125
            ++ HG + N           QD+ G T    ++  
Sbjct: 99  LLK-HGADVN----------AQDKFGKTAFDISIGN 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 73.2 bits (181), Expect = 6e-16
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 15/125 (12%)

Query: 218 RNPLHYAAALGHFEIACRL----SDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHS 273
                +A   G  +          D +          G+ PLH A++ G+L +L+ LL  
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVN-----RTLEGGRKPLHYAADCGQLEILEFLL-L 61

Query: 274 YPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLAAINN 332
               I   DK +   L  A   GH + V + +SK  +          +G T         
Sbjct: 62  KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK----TVKGPDGLTAFEATDNQA 117

Query: 333 HFNIV 337
              ++
Sbjct: 118 IKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 71.3 bits (176), Expect = 2e-15
 Identities = 27/125 (21%), Positives = 40/125 (32%), Gaps = 11/125 (8%)

Query: 250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVF-ISKLP 308
                   A +NG L  +K  +    D +    +  R  LH AA  G   ++ F + K  
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64

Query: 309 EIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQ 368
           +I    N+ D    TPL  A    H + V +L      +         TA          
Sbjct: 65  DI----NAPDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEAT----DN 115

Query: 369 NDILE 373
             I  
Sbjct: 116 QAIKA 120

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 52.8 bits (128), Expect = 6e-09
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 13/88 (14%)

Query: 39  DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG-N 97
           D     A + G  + V + +    D V+        P+H AA  G   + +  +   G +
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLL-KGAD 65

Query: 98  GNNTGTFDDILRKQDEEGNTPLHNAVRK 125
            N            D+   TPL +AV +
Sbjct: 66  IN----------APDKHHITPLLSAVYE 83

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 48.2 bits (116), Expect = 3e-07
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 13/87 (14%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG-NG 98
             LH AA  G   ++  +L    D ++  +    TP+  A   G+    K+ +   G + 
Sbjct: 42  KPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHVSCVKLLLS-KGADK 99

Query: 99  NNTGTFDDILRKQDEEGNTPLHNAVRK 125
                       +  +G T       +
Sbjct: 100 T----------VKGPDGLTAFEATDNQ 116

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 46.6 bits (112), Expect = 1e-06
 Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 17/131 (12%)

Query: 145 INKAGQSPLSLAIDAGLTHIACCIIKEKLSV---LDHRGPNDLTLLHIAIIKSNFVVMAK 201
           +          A+  G   +    +K+ ++    ++         LH A       +  +
Sbjct: 3   LGSMCDKEFMWALKNG--DLD--EVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEI-LE 57

Query: 202 ILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRL----SDEDDTLAYERDCNGQSPLHL 257
            L  K   IN  DK    PL  A   GH      L    +D+       +  +G +    
Sbjct: 58  FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT-----VKGPDGLTAFEA 112

Query: 258 ASENGKLSLLK 268
                  +LL+
Sbjct: 113 TDNQAIKALLQ 123

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 75.8 bits (187), Expect = 7e-16
 Identities = 40/254 (15%), Positives = 74/254 (29%), Gaps = 52/254 (20%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG-NG 98
             L  AA  G   VV + ++   D  S  N +  T +H A    N+ +    +   G N 
Sbjct: 23  VLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLIT-AGANV 80

Query: 99  NNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAID 158
           N            D  G TPLH A                                    
Sbjct: 81  N----------SPDSHGWTPLHCAASC--------------------------------- 97

Query: 159 AGLTHIACCIIKEKLSVLDHRGPND-LTLLHIA-IIKSNFVVMAKILEAKRDLINVLDKR 216
              T I   +++   ++      +D  T        +  +   A  L      + +++  
Sbjct: 98  -NDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSG 155

Query: 217 DRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPD 276
               L   +A    E++ R  +        RD   ++    A+ +G+   + R       
Sbjct: 156 AVYALWDYSAEFGDELSFREGESVT--VLRRDGPEETDWWWAALHGQEGYVPRNYFGLFP 213

Query: 277 SIEFLDKKNRNILH 290
            ++    K ++  H
Sbjct: 214 RVKPQRSKVKHHHH 227

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 25/158 (15%), Positives = 41/158 (25%), Gaps = 8/158 (5%)

Query: 182 NDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDD 241
             +T LH AI       +   L      +N  D     PLH AA+     I   L     
Sbjct: 53  EGITALHNAICG-ANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111

Query: 242 TLAYERDCNGQSPLHLAS--ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHAN 299
            +      +G +          G        L     S+  ++      L   +      
Sbjct: 112 AIFATTLSDGATAFEKCDPYREGYADCAT-YLADVEQSMGLMNSGAVYALWDYSAEFGDE 170

Query: 300 VVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIV 337
           +     +   +       D    T    AA++     V
Sbjct: 171 LSFREGESVTV----LRRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 73.1 bits (180), Expect = 5e-15
 Identities = 25/191 (13%), Positives = 59/191 (30%), Gaps = 21/191 (10%)

Query: 177 DHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRL 236
                N L LL  A   +  + + +    + +  +  ++     LH A    ++ I   L
Sbjct: 15  RRARLNPLVLLLDAA-LTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFL 73

Query: 237 SDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNI-LH 290
                 +         D +G +PLH A+      +    L  +  +I      +      
Sbjct: 74  ------ITAGANVNSPDSHGWTPLHCAASCNDTVICM-ALVQHGAAIFATTLSDGATAFE 126

Query: 291 LAA--QNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNI 348
                + G+A+     + L ++E  +   +      L   +     + +        V +
Sbjct: 127 KCDPYREGYADCA---TYLADVEQSMGLMNSGAVYALWDYSAEFG-DELSFR-EGESVTV 181

Query: 349 RATNEKKQTAL 359
              +  ++T  
Sbjct: 182 LRRDGPEETDW 192

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 73.9 bits (182), Expect = 1e-15
 Identities = 24/185 (12%), Positives = 54/185 (29%), Gaps = 23/185 (12%)

Query: 182 NDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAAL-----GHFEIACRL 236
           ++   +  A +   +    ++ E         +   ++ + Y           ++I+  L
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 237 SDED-DTLAYERDCNGQSPLHLASENGKLS------LLKRLLHSYPDSIEFLDKKNRNIL 289
            ++  D  +  R   G +      + G         L K  L    D I  L K  + ++
Sbjct: 62  INKGADIKS--RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVV 118

Query: 290 HLAAQNGHANVVVFISKLPEIEDM----INSSDLEGNTPLHLAAINNHFNIV-LILARNM 344
                N   +    I     I       +   D  G T L           + ++     
Sbjct: 119 FKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK 178

Query: 345 RVNIR 349
           + N++
Sbjct: 179 KYNLK 183

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 23/212 (10%), Positives = 47/212 (22%), Gaps = 57/212 (26%)

Query: 35  SQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSE---TPMHVAARAGNFGVAKIF 91
           + +    +  AA  G     +E+ E +         KS      +        + ++   
Sbjct: 3   AMSEYRTVSAAAMLGTYEDFLELFE-KGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 92  MRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICY------- 144
           +     G +       ++ + +EG T      +          I    EL          
Sbjct: 62  IN---KGAD-------IKSRTKEGTTLFFPLFQGGGND-----ITGTTELCKIFLEKGAD 106

Query: 145 ---INKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAK 201
              + K  +  +   I          I   KL +    G                     
Sbjct: 107 ITALYKPYKIVVFKNIFNYFVDENEMIPLYKL-IFSQSGLQ------------------- 146

Query: 202 ILEAKRDLINVLDKRDRNPLHYAAALGHFEIA 233
                   + + DK     L +          
Sbjct: 147 --------LLIKDKWGLTALEFVKRCQKPIAL 170

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 12/106 (11%), Positives = 27/106 (25%), Gaps = 14/106 (13%)

Query: 40  TALHIAARFGHKNVV--MEILELRPDLVS------VENHKSETPMHVAARAGNFGVAKIF 91
           T      + G  ++    E+ ++    +             +  +            ++ 
Sbjct: 77  TLFFPLFQGGGNDITGTTELCKI---FLEKGADITALYKPYKIVVFKNIFNYFVDENEMI 133

Query: 92  MRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRK 137
                  + +G    +L K D+ G T L    R         M   
Sbjct: 134 PLYKLIFSQSGL--QLLIK-DKWGLTALEFVKRCQKPIALKMMEDY 176

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 70.1 bits (173), Expect = 3e-15
 Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 6/92 (6%)

Query: 250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLP 308
           NG++PLHLA+ NG L ++K LL +  D +   DK  R  LHLAA+NGH  VV + +    
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 309 EIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
           ++    N+ D  G TPLHLAA N H  +V +L
Sbjct: 60  DV----NAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 51.2 bits (124), Expect = 1e-08
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 13/87 (14%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG-NG 98
           T LH+AAR GH  VV  +LE   D V+ ++    TP+H+AAR G+  V K+ +   G + 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADV 61

Query: 99  NNTGTFDDILRKQDEEGNTPLHNAVRK 125
           N           +D+ G TPLH A R 
Sbjct: 62  N----------AKDKNGRTPLHLAARN 78

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 47.7 bits (115), Expect = 2e-07
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRL----SDED 240
           T LH+A  ++  + + K+L      +N  DK  R PLH AA  GH E+   L    +D +
Sbjct: 4   TPLHLAA-RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 241 DTLAYERDCNGQSPLHLASENGKLSLLKRLL 271
                 +D NG++PLHLA+ NG L ++K LL
Sbjct: 63  -----AKDKNGRTPLHLAARNGHLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 40.4 bits (96), Expect = 8e-05
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 37 NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKI 90
          N  T LH+AAR GH  VV  +LE   D V+ ++    TP+H+AAR G+  V K+
Sbjct: 34 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKL 86

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 71.7 bits (176), Expect = 3e-14
 Identities = 34/180 (18%), Positives = 57/180 (31%), Gaps = 41/180 (22%)

Query: 217 DRNPLHYAAALGHFEIA-----------CRLSDEDDTLAYERDCNGQSPLHLASEN---G 262
           +R  L    + G  +              RL+DE+    +     G++ L  A  N   G
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE----FREPSTGKTCLPKALLNLSAG 60

Query: 263 KLSLLKRLLHSYPDSIEFLDKKNRNI----------LHLAAQNGHANVV-VFISK----- 306
           +   +  LL     +    +  N             LH+A +    + V + + K     
Sbjct: 61  RNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH 120

Query: 307 -----LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARN--MRVNIRATNEKKQTAL 359
                              G  PL LAA  N  +IV  L  N   + ++R  + +  T L
Sbjct: 121 AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 71.0 bits (174), Expect = 5e-14
 Identities = 29/200 (14%), Positives = 56/200 (28%), Gaps = 35/200 (17%)

Query: 178 HRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIA---- 233
             G ND   + + I +    +   I          +  R +  LH A             
Sbjct: 58  SAGRNDTIPILLDIAEKTGNMREFINSP----FRDVYYRGQTALHIAIERRCKHYVELLV 113

Query: 234 ---------CRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLL-HSYPD-SIEFLD 282
                     R               G+ PL LA+   +  ++  L  + +    +   D
Sbjct: 114 EKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQD 173

Query: 283 KKNRNILHLAAQNGHANVVVFISKLPEIEDMINS--------------SDLEGNTPLHLA 328
            +   +LH        N       + ++ D++                 + +G +PL +A
Sbjct: 174 SRGNTVLHALVAIAD-NTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMA 232

Query: 329 AINNHFNIV-LILARNMRVN 347
           A      I   I+ R +   
Sbjct: 233 AKTGKIGIFQHIIRREIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 62.1 bits (151), Expect = 4e-11
 Identities = 48/261 (18%), Positives = 83/261 (31%), Gaps = 44/261 (16%)

Query: 37  NRDTALHIAAR---FGHKNVVMEILELRPDLVSVENHKS---ETPMHVAA---RAGNFGV 87
           NR     I +R    G + ++  +L  +  L   E  +    +T +  A     AG    
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 88  AKIFMRPHGNGNNTGTF-DDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRK--------- 137
             I +       N   F +   R     G T LH A+ +        ++ K         
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 138 ----DPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSV--LDHRGPNDLTLLHIAI 191
                P+        G+ PLSLA      HI   + +       L  +     T+LH  +
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV 184

Query: 192 IKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNG 251
             ++               N  +        Y   L      C     D  L    + +G
Sbjct: 185 AIAD---------------NTRENTKFVTKMYDLLLIK----CAKLFPDTNLEALLNNDG 225

Query: 252 QSPLHLASENGKLSLLKRLLH 272
            SPL +A++ GK+ + + ++ 
Sbjct: 226 LSPLMMAAKTGKIGIFQHIIR 246

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 61.7 bits (150), Expect = 6e-11
 Identities = 41/169 (24%), Positives = 54/169 (31%), Gaps = 37/169 (21%)

Query: 31  ILDMSQNRDTALHIAARFGHKNVVMEIL--------------ELRPDLVSVENHKSETPM 76
             D+     TALHIA     K+ V E+L                +P       +  E P+
Sbjct: 86  FRDVYYRGQTALHIAIERRCKHYV-ELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPL 144

Query: 77  HVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTM-- 134
            +AA      +              G     LR+QD  GNT LH  V   D     T   
Sbjct: 145 SLAACTNQPHIVHYLT-------ENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFV 197

Query: 135 -------------IRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK 170
                        +  D  L   +N  G SPL +A   G   I   II+
Sbjct: 198 TKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 8/107 (7%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVE--NHKSETPMHVAARAG-NFGVAKIFMRPHG 96
             L +AA     ++V  + E       +   + +  T +H       N      F+    
Sbjct: 142 LPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMY 201

Query: 97  N-----GNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKD 138
           +             ++    + +G +PL  A +     +   +IR++
Sbjct: 202 DLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE 248

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 56.0 bits (136), Expect = 4e-10
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLP 308
           +    L  A+  G+   ++ L+ +    +   DK     LHLAA+NGH  VV + +    
Sbjct: 23  DLGKKLLEAARAGQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81

Query: 309 EIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
           ++     + D  G T   ++  N + ++  IL
Sbjct: 82  DVX----AQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 55.7 bits (135), Expect = 6e-10
 Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 10/113 (8%)

Query: 258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINS 316
            S +        L+         +       L  AA+ G  + V + ++   ++     +
Sbjct: 1   GSSHHHHHHSSGLVPRGSH----MGSDLGKKLLEAARAGQDDEVRILMANGADV----AA 52

Query: 317 SDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQN 369
            D  G+TPLHLAA N H  +V +L      ++ A ++  +TA  I   + +++
Sbjct: 53  KDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISIDNGNED 104

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 53.0 bits (128), Expect = 4e-09
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 12/96 (12%)

Query: 214 DKRDRNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLK 268
                  L  AA  G  +    L      +A       +D NG +PLHLA+ NG L ++K
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRIL------MANGADVAAKDKNGSTPLHLAARNGHLEVVK 74

Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI 304
            LL +  D +   DK  +    ++  NG+ ++   +
Sbjct: 75  LLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 44.5 bits (106), Expect = 5e-06
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 11/86 (12%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN 99
             L  AAR G  + V  ++    D V+ ++    TP+H+AAR G+  V K+ +     G 
Sbjct: 26  KKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLL---EAGA 81

Query: 100 NTGTFDDILRKQDEEGNTPLHNAVRK 125
           +       +  QD+ G T    ++  
Sbjct: 82  D-------VXAQDKFGKTAFDISIDN 100

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 14/81 (17%)

Query: 45  AARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTF 104
            +   H +    ++     +           +  AARAG     +I M    NG +    
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILM---ANGAD---- 49

Query: 105 DDILRKQDEEGNTPLHNAVRK 125
              +  +D+ G+TPLH A R 
Sbjct: 50  ---VAAKDKNGSTPLHLAARN 67

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 6/91 (6%)

Query: 182 NDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDD 241
           +    L  A          +IL A    +   DK    PLH AA  GH E+   L +   
Sbjct: 23  DLGKKLLEAARAGQDDE-VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG- 80

Query: 242 TLA--YERDCNGQSPLHLASENGKLSLLKRL 270
             A    +D  G++   ++ +NG   L + L
Sbjct: 81  --ADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 36  QNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIF 91
           +N  T LH+AAR GH  VV  +LE   D V  ++   +T   ++   GN  +A+I 
Sbjct: 55  KNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 58.5 bits (141), Expect = 1e-09
 Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 7/121 (5%)

Query: 258 ASENGKLSLLKRLLHSYPDSIEFL-----DKKNRNILHLAAQNGHANVVVFISKLPEIED 312
           A +   +  L +      D  E +      + +   LHLA ++     +  +  L +   
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG 196

Query: 313 MINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDIL 372
            ++    +G+T LH   + ++   + +L R  + +I   NE  +T L I +  L      
Sbjct: 197 NLDKQTGKGSTALHYCCLTDNAECLKLLLRG-KASIEIANESGETPLDIAK-RLKHEHCE 254

Query: 373 E 373
           E
Sbjct: 255 E 255

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 54.2 bits (130), Expect = 2e-08
 Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 13/118 (11%)

Query: 163 HIACCIIKEKLSVLDHRGPNDLTLLHIAII--KSNFVVMAKILEAKRDLINVLDKRDRNP 220
             A  +   +   L +    D T LH+A+       + +   L      ++    +    
Sbjct: 149 AYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTA 208

Query: 221 LHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASENGKLSLLKRLLHS 273
           LHY     + E    L      L         + +G++PL +A         + L  +
Sbjct: 209 LHYCCLTDNAECLKLL------LRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 53.5 bits (128), Expect = 5e-08
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 12/96 (12%)

Query: 33  DMSQNRDTALHIAARFGHKNVV--MEILELRPDLVSVENHKSETPMHVAARAGNFGVAKI 90
           +  +  +TALH+A R   +  +  ++ L      +  +  K  T +H      N    K+
Sbjct: 164 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKL 223

Query: 91  FMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKC 126
            +R      +           +E G TPL  A R  
Sbjct: 224 LLR---GKASIEI-------ANESGETPLDIAKRLK 249

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 52.3 bits (125), Expect = 9e-08
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 5/111 (4%)

Query: 232 IACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLK--RLLHSYPDSIEFLDKKNRNIL 289
            A  +   +           ++ LHLA  +   + L     L     +++    K    L
Sbjct: 150 YADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL 209

Query: 290 HLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
           H      +A  +     L   +  I  ++  G TPL +A    H +   +L
Sbjct: 210 HYCCLTDNAECLKL---LLRGKASIEIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 50.0 bits (119), Expect = 6e-07
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 12/103 (11%)

Query: 66  SVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRK 125
           +  +   ET +H+A R+ +     I      N  N       L KQ  +G+T LH     
Sbjct: 163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-------LDKQTGKGSTALHYCCLT 215

Query: 126 CDGKMAFTMIRK--DPELICYINKAGQSPLSLAIDAGLTHIAC 166
            + +    ++R     E+    N++G++PL +A      H   
Sbjct: 216 DNAECLKLLLRGKASIEI---ANESGETPLDIAKRLKHEHCEE 255

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 8   LFRALRRGDAATVR--ESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLV 65
           L  A+R  D  ++   +    N   +   +    TALH      +   + ++L      +
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL-KLLLRGKASI 231

Query: 66  SVENHKSETPMHVAARAGNFGVAKIFM 92
            + N   ETP+ +A R  +    ++  
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 23/129 (17%), Positives = 35/129 (27%), Gaps = 33/129 (25%)

Query: 108 LRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACC 167
           L    E   T LH AVR                       +        +D  + +    
Sbjct: 162 LANGHEPDETALHLAVR-----------------------SVDRTSLHIVDFLVQNSG-- 196

Query: 168 IIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAAL 227
                L     +G    T LH     ++     K+L   +  I + ++    PL  A  L
Sbjct: 197 ----NLDKQTGKG---STALHYC-CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL 248

Query: 228 GHFEIACRL 236
            H      L
Sbjct: 249 KHEHCEELL 257

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 2e-09
 Identities = 43/277 (15%), Positives = 90/277 (32%), Gaps = 69/277 (24%)

Query: 108 LRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACC 167
           L ++    N P   +       +    IR                L+  I++ L  +   
Sbjct: 318 LPREVLTTN-PRRLS-------IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 168 IIK---EKLSVLDHRGPND-------LTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRD 217
             +   ++LSV     P         L+L+   +IKS+ +V+   L  K  L+     + 
Sbjct: 370 EYRKMFDRLSVF----PPSAHIPTILLSLIWFDVIKSDVMVVVNKLH-KYSLVE----KQ 420

Query: 218 RNPLHYAAALGHFEIACRLSDEDDTL------AYE----RDCNGQSPL------------ 255
                 +    + E+  +L + +  L       Y      D +   P             
Sbjct: 421 PKESTISIPSIYLELKVKL-ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 256 HL--ASENGKLSLLKRLLHSYPDSIEFLDKKNRNI-LHLAAQNGHANVVV-------FIS 305
           HL       +++L + +   + D   FL++K R+      A     N +        +I 
Sbjct: 480 HLKNIEHPERMTLFRMV---FLD-FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535

Query: 306 K-LPEIEDMINSSDLEGNTPLHLAAI--NNHFNIVLI 339
              P+ E ++N   +    P     +  + + +++ I
Sbjct: 536 DNDPKYERLVN--AILDFLPKIEENLICSKYTDLLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 45/293 (15%), Positives = 84/293 (28%), Gaps = 83/293 (28%)

Query: 221 LHYAAALGHFEIA------CR-LSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHS 273
             Y   L  FE A      C+ + D   ++  + + +     H+      +S   RL   
Sbjct: 16  YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID-----HIIMSKDAVSGTLRL--- 67

Query: 274 YPDSIEFLDKKNRNILHLAAQNGHANVVVFI-SKLPEIEDMINSSDLEGNTPLHLAAINN 332
                  L  K   ++    +        F+ S +               T +++   + 
Sbjct: 68  ----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT-----EQRQPSMMTRMYIEQRDR 118

Query: 333 HFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDILEGHGGSASGTGTTTTDLIA- 391
            +N   + A+   V+      K + AL  ++P   +N +++G  GS    G T   +   
Sbjct: 119 LYNDNQVFAK-YNVSRLQPYLKLRQALLELRP--AKNVLIDGVLGS----GKTW--VALD 169

Query: 392 --------------------GPKNED-----MAQNLLVMATLVATLTFTSAFTIPGGYND 426
                                  N       M Q LL       T     +  I    + 
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 427 -----------KGVP----IFDTNL----VFKAFVLTDTIAMTT---SLTAAV 457
                      K       +   N+     + AF L+  I +TT    +T  +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLL-NVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 2/106 (1%)

Query: 180 GPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDE 239
           G ++ T L  A   ++ +    +L+   + +N  D   R PLH+A  LGH  +AC     
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHHATILGHTGLACLFLKR 290

Query: 240 DDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKN 285
              L   RD  G+ PL +A E     ++  L  +     E    + 
Sbjct: 291 GADLG-ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQA 335

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 29/176 (16%), Positives = 55/176 (31%), Gaps = 6/176 (3%)

Query: 199 MAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLA 258
           + K+ E +         R + P+    ++     + R   E  +        G      +
Sbjct: 148 LTKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRAS 207

Query: 259 SENGKLSLLKRLLHSYPDSIEFL-DKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSS 317
                L  +   L    D       + N   L  A          F   L +    +N +
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEF---LLQNGANVNQA 264

Query: 318 DLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDILE 373
           D  G  PLH A I  H  +  +  +    ++ A + + +  L I   + +  DI+ 
Sbjct: 265 DSAGRGPLHHATILGHTGLACLFLKR-GADLGARDSEGRDPLTIAMETAN-ADIVT 318

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 6/130 (4%)

Query: 246 ERDCNGQSPLHLASENGKLSLLKRLLH-----SYPDSIEFLDKKNRNILHLAAQNGHANV 300
            R       L  A  N  L  +            P            +LHLA +  +   
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205

Query: 301 VVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALA 360
           +  +  + +    +++   +GNT LH AA+ N  + + +L +  R  +   NE  +TAL 
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG-RALVGTVNEAGETALD 264

Query: 361 IVQPSLHQND 370
           I +   H+  
Sbjct: 265 IARKKHHKEC 274

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 12/95 (12%)

Query: 33  DMSQNRDTALHIAARFGHKN--VVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKI 90
           D     +  LH+A +  ++    +++ +      +  +     T +H AA        K+
Sbjct: 185 DAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKL 244

Query: 91  FMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRK 125
            ++        GT        +E G T L  A +K
Sbjct: 245 LLK---GRALVGT-------VNEAGETALDIARKK 269

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 13/85 (15%)

Query: 185 TLLHIAIIKSNF--VVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDT 242
            +LH+A+  +N   + +   +      ++         LHYAA     +    L      
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL------ 245

Query: 243 LAY-----ERDCNGQSPLHLASENG 262
           L         +  G++ L +A +  
Sbjct: 246 LKGRALVGTVNEAGETALDIARKKH 270

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 5/111 (4%)

Query: 232 IACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLK--RLLHSYPDSIEFLDKKNRNIL 289
            A            +     +  LHLA +    + L     +      ++         L
Sbjct: 171 FANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230

Query: 290 HLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
           H AA     + +     L +   ++ + +  G T L +A   +H     +L
Sbjct: 231 HYAALYNQPDCLKL---LLKGRALVGTVNEAGETALDIARKKHHKECEELL 278

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 51.1 bits (122), Expect = 4e-07
 Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFL-----DKKNRNILHLAAQNGHANVV 301
           R       L  A  N  L  +     +  D  + L           +LHLA +  +   +
Sbjct: 128 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASL 187

Query: 302 VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
             +  + +    +++   +GNT LH AA+ N  + + +L +  R  +   NE  +TAL I
Sbjct: 188 PLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG-RALVGTVNEAGETALDI 246

Query: 362 VQPSLHQND 370
            +   H+  
Sbjct: 247 ARKKHHKEC 255

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	464
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	99.98
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.82
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.82
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.73
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.65

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-58  Score=446.43  Aligned_cols=357  Identities=26%  Similarity=0.367  Sum_probs=309.9

Q ss_pred             ccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC
Q 038664            4 VARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG   83 (464)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g   83 (464)
                      -.++|+.|++.|+.+.++.|++. +.+++..+..|.||||+|+..|+.+++++|++++++ ++.++..|.||||+|+..|
T Consensus        14 g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g   91 (437)
T 1n11_A           14 GLTPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIG   91 (437)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHT-TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTSCCHHHHHHHHT
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCC
Confidence            45789999999999999999976 458888899999999999999999999999999998 7889999999999999999


Q ss_pred             CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHH
Q 038664           84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTH  163 (464)
Q Consensus        84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~  163 (464)
                      +.+++++|++++++++          ..+..|.||||+|+..|+.+++++|++.+... ...+..|.||||+|+..|+.+
T Consensus        92 ~~~~v~~Ll~~ga~~~----------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g~~~  160 (437)
T 1n11_A           92 HTNMVKLLLENNANPN----------LATTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVR  160 (437)
T ss_dssp             CHHHHHHHHHHTCCTT----------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHH
T ss_pred             CHHHHHHHHhCCCCCC----------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcCCHH
Confidence            9999999999998854          67788899999999999999999999888773 456778889999999999999


Q ss_pred             HHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCc
Q 038664          164 IACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTL  243 (464)
Q Consensus       164 ~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~  243 (464)
                      ++++|++.+.++ +..+..|.||||+|+..++.+++++|++++.+ ++..+..|.||||+|+..|+.+++++|++.+.+.
T Consensus       161 ~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  238 (437)
T 1n11_A          161 VAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA  238 (437)
T ss_dssp             HHHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999888876 77788888999999999999999999888877 6777888889999999999999999999888877


Q ss_pred             cccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCc
Q 038664          244 AYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNT  323 (464)
Q Consensus       244 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t  323 (464)
                      + ..+..|.||||+|+..|+.+++++|++++++ ++..+..|+||||+|++.|+.+++++|++.   +.+++.+|..|+|
T Consensus       239 ~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t  313 (437)
T 1n11_A          239 N-AESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKH---GVMVDATTRMGYT  313 (437)
T ss_dssp             T-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHH---TCCTTCCCSSCCC
T ss_pred             C-CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC---CccCCCCCCCCCC
Confidence            6 5777888999999999999999998888887 488888888999999988888888888876   6778888888889


Q ss_pred             HHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCchhhHH--HhhcCCCCCC
Q 038664          324 PLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDI--LEGHGGSASG  381 (464)
Q Consensus       324 ~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~~--l~~~g~~~~~  381 (464)
                      |||+|+..|+.+++++|+++ |+|++.+|..|+|||++|...++.+.+  |..+|+++..
T Consensus       314 ~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~  372 (437)
T 1n11_A          314 PLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE  372 (437)
T ss_dssp             HHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             HHHHHHHcCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCC
Confidence            99999988888899888876 888888888899999988887776653  6777877654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6e-58  Score=441.54  Aligned_cols=346  Identities=25%  Similarity=0.323  Sum_probs=325.2

Q ss_pred             ccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC
Q 038664            4 VARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG   83 (464)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g   83 (464)
                      ..++|+.|++.|+.+.++.|++.+ .+++..+..|.||||+|+..|+.++|++|+++|++ ++..+..|.||||+|+..|
T Consensus        47 ~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g  124 (437)
T 1n11_A           47 VETPLHMAARAGHTEVAKYLLQNK-AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREG  124 (437)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHT-CCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcC
Confidence            457999999999999999988765 58898999999999999999999999999999998 7889999999999999999


Q ss_pred             CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHH
Q 038664           84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTH  163 (464)
Q Consensus        84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~  163 (464)
                      +.+++++|++.+++..          ..+..|.||||+|+..|+.+++++|++.+++ ++..+..|.|||++|+..|+.+
T Consensus       125 ~~~~v~~Ll~~~~~~~----------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~  193 (437)
T 1n11_A          125 HVETVLALLEKEASQA----------CMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLD  193 (437)
T ss_dssp             CHHHHHHHHHTTCCSC----------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSCCCHHHHHHHTTCHH
T ss_pred             CHHHHHHHHhCCCCCc----------CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHH
Confidence            9999999999987743          5778899999999999999999999999988 4677899999999999999999


Q ss_pred             HHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCc
Q 038664          164 IACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTL  243 (464)
Q Consensus       164 ~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~  243 (464)
                      ++++|++.+.++ +..+..+.||||+|+..++.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++++++.
T Consensus       194 ~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  271 (437)
T 1n11_A          194 IVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG  271 (437)
T ss_dssp             HHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             HHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC
Confidence            999999999887 77888999999999999999999999999987 7889999999999999999999999999999988


Q ss_pred             cccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCc
Q 038664          244 AYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNT  323 (464)
Q Consensus       244 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t  323 (464)
                      + ..+..|.||||+|++.|+.+++++|++++.+ ++.+|..|+||||+|+.+|+.+++++|++.   ++++|.+|..|+|
T Consensus       272 ~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---gad~n~~~~~g~t  346 (437)
T 1n11_A          272 N-LGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQH---QADVNAKTKLGYS  346 (437)
T ss_dssp             T-CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHT---TCCTTCCCTTSCC
T ss_pred             C-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhc---CCCCCCCCCCCCC
Confidence            7 6889999999999999999999999999988 599999999999999999999999999988   7889999999999


Q ss_pred             HHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCchhhH
Q 038664          324 PLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQND  370 (464)
Q Consensus       324 ~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~  370 (464)
                      |||+|++.|+.+++++|+++ |++++.+|.+|+||+++|.+.++...
T Consensus       347 ~L~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~t~l~~A~~~g~~~~  392 (437)
T 1n11_A          347 PLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPLAIAKRLGYISV  392 (437)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT-TCCSCCCCSSSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHCChHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCcHHH
Confidence            99999999999999999976 99999999999999999998887554

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=6e-47  Score=351.85  Aligned_cols=295  Identities=20%  Similarity=0.190  Sum_probs=253.0

Q ss_pred             cCCCCchhHHHHhcCCHHHHHHHHHhCCccccccc-cCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCC
Q 038664           35 SQNRDTALHIAARFGHKNVVMEILELRPDLVSVEN-HKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDE  113 (464)
Q Consensus        35 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  113 (464)
                      +.+|+|+||.|+..|+.++|++||++|++ ++.++ ..|+||||+|+..|+.++|++|+++|+++.          .++.
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gad-vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~----------~~~~   90 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV----------LRKK   90 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCT
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchh----------hhcc
Confidence            34578999999999999999999999999 55555 469999999999999999999999998854          7888


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCc---------CCCCCCCC
Q 038664          114 EGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVL---------DHRGPNDL  184 (464)
Q Consensus       114 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~---------~~~~~~~~  184 (464)
                      .+.+|++.++..+...++..++..+.+ .+..+..|.||+++|+..|+.++++++++++.++.         ...+..|.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~  169 (337)
T 4g8k_A           91 NGATPFILAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA  169 (337)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSC
T ss_pred             CCCchhHHHHhcccchhhHHhhhccch-hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCC
Confidence            999999999999999999999999888 46788999999999999999999999999987761         23345688


Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCC----HHHHHHHhhcCCCccccccCCCCCccccccc
Q 038664          185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGH----FEIACRLSDEDDTLAYERDCNGQSPLHLASE  260 (464)
Q Consensus       185 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~----~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  260 (464)
                      ||||+|+..|+.+++++|+++.+..++..+..|.|+++.++..+.    .+++++|+++|++++ .++..|+||||+|+.
T Consensus       170 T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n-~~d~~g~t~L~~a~~  248 (337)
T 4g8k_A          170 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN-VRGERGKTPLILAVE  248 (337)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTT-CCCGGGCCHHHHHHH
T ss_pred             cHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHH
Confidence            999999999999999999976444488999999999998876554    357889999999887 588899999999999


Q ss_pred             CCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHH
Q 038664          261 NGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL  340 (464)
Q Consensus       261 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  340 (464)
                      .|+.++++.|++.....++.+|.+|+||||+|+++|+.+++++|++.   |+++|.     .||||+|++.|+.++|++|
T Consensus       249 ~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~---GAd~n~-----~~~L~~A~~~~~~~iv~~L  320 (337)
T 4g8k_A          249 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR---GASTDC-----GDLVMTARRNYDHSLVKVL  320 (337)
T ss_dssp             TTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT---SCSSTT-----CCHHHHHHHTTCHHHHHHH
T ss_pred             hhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCC-----CCHHHHHHHcCCHHHHHHH
Confidence            99999999999875555799999999999999999999999999987   566554     4699999999999999999


Q ss_pred             Hhccccccccc
Q 038664          341 ARNMRVNIRAT  351 (464)
Q Consensus       341 l~~~~~d~~~~  351 (464)
                      +++ |||+|..
T Consensus       321 l~~-GA~~d~~  330 (337)
T 4g8k_A          321 LSH-GAKEDFH  330 (337)
T ss_dssp             HHT-TCCC---
T ss_pred             HHC-cCCCCCC
Confidence            976 9988864

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.8e-46  Score=351.01  Aligned_cols=298  Identities=17%  Similarity=0.180  Sum_probs=192.0

Q ss_pred             cCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCC
Q 038664           35 SQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEE  114 (464)
Q Consensus        35 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  114 (464)
                      +..+.|+||.|+..|+.+.|+.|+......++..|..|.||||+|+..|+.+++++|++.+++.          +.++..
T Consensus        21 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~----------~~~~~~   90 (351)
T 3utm_A           21 GEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV----------HAKDKG   90 (351)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCCTT
T ss_pred             ccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------CccCCC
Confidence            3444555555555555555555555433334555555555555555555555555555555542          244555


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcC
Q 038664          115 GNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKS  194 (464)
Q Consensus       115 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~  194 (464)
                      |.||||+|+..|+.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++++.++ +..+..+.++++.++..+
T Consensus        91 g~t~L~~A~~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~  168 (351)
T 3utm_A           91 GLVPLHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPE  168 (351)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHH
T ss_pred             CCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhh
Confidence            55555555555555555555555555 2344555666666666666666666666655554 555556666666665555


Q ss_pred             CHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccC---CcHHHHHHHH
Q 038664          195 NFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASEN---GKLSLLKRLL  271 (464)
Q Consensus       195 ~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~---g~~~~v~~Ll  271 (464)
                      ..+.+.+...             ..++..++..++.+.++.++....... ..+..|.||||+|+..   +..+++++|+
T Consensus       169 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll  234 (351)
T 3utm_A          169 LRERLTYEFK-------------GHSLLQAAREADLAKVKKTLALEIINF-KQPQSHETALHCAVASLHPKRKQVAELLL  234 (351)
T ss_dssp             HHHHHHHHHH-------------HHHHHHHHHTTCHHHHHHHTTTCCTTC-CCTTTCCCHHHHHHHCCSTTHHHHHHHHH
T ss_pred             hHHHHHhhhc-------------ccHHHHHHHhccHHHHHHHHHhhcccc-cCCCCCCCHHHHHHHHhCccHHHHHHHHH
Confidence            4444444332             134666677777777777776665444 4566677777777777   5577888888


Q ss_pred             HHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccc
Q 038664          272 HSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRAT  351 (464)
Q Consensus       272 ~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~  351 (464)
                      +.+.+ ++.+|..|+||||+|+..|+.+++++|++.   +++++.+|..|+||||+|++.|+.+++++|+++ |+|++.+
T Consensus       235 ~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~  309 (351)
T 3utm_A          235 RKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKH---GAKMNALDSLGQTALHRAALAGHLQTCRLLLSY-GSDPSII  309 (351)
T ss_dssp             HTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC
T ss_pred             HcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCc
Confidence            77777 477777888888888888888888888776   677777888888888888888888888888865 8888888


Q ss_pred             cccCCChHHhhc
Q 038664          352 NEKKQTALAIVQ  363 (464)
Q Consensus       352 n~~g~t~l~~a~  363 (464)
                      |..|+||+++|.
T Consensus       310 ~~~g~tal~~a~  321 (351)
T 3utm_A          310 SLQGFTAAQMGN  321 (351)
T ss_dssp             CTTSCCHHHHSC
T ss_pred             CCCCCChhhhhh
Confidence            888888888875

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=9.2e-46  Score=346.19  Aligned_cols=324  Identities=19%  Similarity=0.209  Sum_probs=278.7

Q ss_pred             ccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC
Q 038664            4 VARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG   83 (464)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g   83 (464)
                      ..++|+.|++.|+.+.+++++...+.+++..+..|.||||+|+..|+.++|++|+++|++ ++.++..|.||||+|+..|
T Consensus        24 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g  102 (351)
T 3utm_A           24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYG  102 (351)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred             cchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHCC
Confidence            357899999999999999999988888999999999999999999999999999999998 7889999999999999999


Q ss_pred             CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHH
Q 038664           84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTH  163 (464)
Q Consensus        84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~  163 (464)
                      +.+++++|++++++.          +..+..|.||||+|+..|+.+++++|++.+++ +...+..|.+|+++++..+..+
T Consensus       103 ~~~iv~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~~~l~~a~~~~~~~  171 (351)
T 3utm_A          103 HYEVTELLLKHGACV----------NAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRE  171 (351)
T ss_dssp             CHHHHHHHHHTTCCT----------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCSSHHHHH
T ss_pred             CHHHHHHHHHCCCCC----------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCcchHHHhhhhhHH
Confidence            999999999999884          47889999999999999999999999999988 5678999999999999888888


Q ss_pred             HHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHc---CCHHHHHHHhhcC
Q 038664          164 IACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAAL---GHFEIACRLSDED  240 (464)
Q Consensus       164 ~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~---~~~~~v~~Ll~~~  240 (464)
                      .+.+....             .++..++..++.+.++.++..... ....+..|.||||+|+..   +..+++++|++.|
T Consensus       172 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g  237 (351)
T 3utm_A          172 RLTYEFKG-------------HSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLRKG  237 (351)
T ss_dssp             HHHHHHHH-------------HHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTT
T ss_pred             HHHhhhcc-------------cHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcC
Confidence            88776652             467888999999999999988765 455678899999999999   5589999999999


Q ss_pred             CCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCC
Q 038664          241 DTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLE  320 (464)
Q Consensus       241 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~  320 (464)
                      .+++ .++..|+||||+|++.|+.+++++|++++.+ ++.+|..|+||||+|+..|+.+++++|++.   |++++.+|..
T Consensus       238 ~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---gad~~~~~~~  312 (351)
T 3utm_A          238 ANVN-EKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSY---GSDPSIISLQ  312 (351)
T ss_dssp             CCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTT
T ss_pred             CCcC-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc---CCCCCCcCCC
Confidence            9988 6889999999999999999999999999988 599999999999999999999999999998   7889999999


Q ss_pred             CCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCc
Q 038664          321 GNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSL  366 (464)
Q Consensus       321 g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~  366 (464)
                      |+||+|+|    +.+++++|.+..    .....++.+++..|.+.+
T Consensus       313 g~tal~~a----~~~~~~~l~~~~----~~~~~~~~~~l~~A~~~g  350 (351)
T 3utm_A          313 GFTAAQMG----NEAVQQILSEST----PMRTSDVDYRLLEASKAG  350 (351)
T ss_dssp             SCCHHHHS----CHHHHHHHHHC-----------------------
T ss_pred             CCChhhhh----hHHHHHHHHhcc----ccccCcceeehhhhhccC
Confidence            99999998    667888888652    334567778888877654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.5e-43  Score=329.03  Aligned_cols=288  Identities=19%  Similarity=0.238  Sum_probs=254.0

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhhcCCCcccccC-CCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC
Q 038664            5 ARVLFRALRRGDAATVRESARLNGNGILDMSQ-NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG   83 (464)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g   83 (464)
                      .+.|+.||+.|+.+.|+.||+. |++++..+. .|+||||+||..|+.++|++|+++|++ ++.++..+.+|++.++..+
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~-Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~  103 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFILAAIAG  103 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc-hhhhccCCCchhHHHHhcc
Confidence            4579999999999999999976 458986654 599999999999999999999999999 7889999999999999999


Q ss_pred             CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccc---------cccccCCCcHHH
Q 038664           84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELI---------CYINKAGQSPLS  154 (464)
Q Consensus        84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~---------~~~~~~g~t~l~  154 (464)
                      ...++..+++.+.+          ++..+..|.||||+|+..|+.+++++|++.++++.         ...+..|.||||
T Consensus       104 ~~~~~~~~~~~~~~----------~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~  173 (337)
T 4g8k_A          104 SVKLLKLFLSKGAD----------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM  173 (337)
T ss_dssp             CHHHHHHHHTTTCC----------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHH
T ss_pred             cchhhHHhhhccch----------hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHH
Confidence            99999999998887          44789999999999999999999999999987642         233567899999


Q ss_pred             HHHHcCCHHHHHHHHHh-cCcCcCCCCCCCCCHHHHHHHcCC----HHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCC
Q 038664          155 LAIDAGLTHIACCIIKE-KLSVLDHRGPNDLTLLHIAIIKSN----FVVMAKILEAKRDLINVLDKRDRNPLHYAAALGH  229 (464)
Q Consensus       155 ~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~  229 (464)
                      +|+..|+.+++++|+++ +.++ +..+..|.++++.++..+.    ..+++.|++++.+ ++.++..|+||||+|+..|+
T Consensus       174 ~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~~g~t~L~~a~~~~~  251 (337)
T 4g8k_A          174 DAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKH  251 (337)
T ss_dssp             HHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTC
T ss_pred             HHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhhh
Confidence            99999999999999975 6665 8899999999998876544    3577888999887 89999999999999999999


Q ss_pred             HHHHHHHhhc-CCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCc
Q 038664          230 FEIACRLSDE-DDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLP  308 (464)
Q Consensus       230 ~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~  308 (464)
                      .++++.|++. +.+++ .+|..|+||||+|++.|+.+++++|+++|++. +     ..+|||+|+++|+.+++++|++. 
T Consensus       252 ~~~v~~Ll~~~~~~vn-~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~-n-----~~~~L~~A~~~~~~~iv~~Ll~~-  323 (337)
T 4g8k_A          252 LGLVQRLLEQEHIEIN-DTDSDGKTALLLAVELKLKKIAELLCKRGAST-D-----CGDLVMTARRNYDHSLVKVLLSH-  323 (337)
T ss_dssp             HHHHHHHHTSTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSS-T-----TCCHHHHHHHTTCHHHHHHHHHT-
T ss_pred             hHHHHHHHHhcCCccc-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-C-----CCCHHHHHHHcCCHHHHHHHHHC-
Confidence            9999999987 45555 78999999999999999999999999999874 4     45799999999999999999998 


Q ss_pred             chhhhhhc
Q 038664          309 EIEDMINS  316 (464)
Q Consensus       309 ~~~~~~~~  316 (464)
                        |+++|.
T Consensus       324 --GA~~d~  329 (337)
T 4g8k_A          324 --GAKEDF  329 (337)
T ss_dssp             --TCCC--
T ss_pred             --cCCCCC
Confidence              666664

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.1e-44  Score=324.87  Aligned_cols=264  Identities=22%  Similarity=0.250  Sum_probs=197.4

Q ss_pred             CCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhc-CCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCC
Q 038664           72 SETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQ-DEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQ  150 (464)
Q Consensus        72 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  150 (464)
                      |.||||.|+..|+.+++++|++.+.+.+          .. +..|.||||+|+..|+.+++++|++.+++ ++..+..|.
T Consensus         5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~----------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~   73 (285)
T 1wdy_A            5 DNHLLIKAVQNEDVDLVQQLLEGGANVN----------FQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGA   73 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCC
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCcc----------cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCC
Confidence            4556666666666666666665554422          22 44556666666666666666666666555 334455566


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhh----------hcCCCCcH
Q 038664          151 SPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINV----------LDKRDRNP  220 (464)
Q Consensus       151 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~----------~~~~g~t~  220 (464)
                      ||||+|+..|+.+++++|++++.++ +..+..|.||||+|+..++.+++++|++.+.+ ++.          .+..|.||
T Consensus        74 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~~~~g~t~  151 (285)
T 1wdy_A           74 TPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRKTKEDQERLRKGGATA  151 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCCCHHHHHTTCCCCCH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCC-cccccccHHHHHhhccCCCcH
Confidence            6666666666666666666665554 55555566666666666666666666666554 333          37789999


Q ss_pred             HHHHHHcCCHHHHHHHhhc-CCCccccccCCCCCcccccccCCc----HHHHHHHHHHCCCcccccccCCCchhHHHHhc
Q 038664          221 LHYAAALGHFEIACRLSDE-DDTLAYERDCNGQSPLHLASENGK----LSLLKRLLHSYPDSIEFLDKKNRNILHLAAQN  295 (464)
Q Consensus       221 L~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~  295 (464)
                      ||+|+..|+.+++++|++. +.+++ ..+..|.||||.|+..++    .+++++|++++.+ ++.+|..|+||||+|+..
T Consensus       152 L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~  229 (285)
T 1wdy_A          152 LMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEK  229 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTSCCCTT-CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCC-ccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHc
Confidence            9999999999999999988 77766 678899999999999999    9999999999988 589999999999999999


Q ss_pred             CchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccc
Q 038664          296 GHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNE  353 (464)
Q Consensus       296 ~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~  353 (464)
                      |+.+++++|++..  +.+++.+|..|+||||+|++.++.+++++|+++ |++++.+|.
T Consensus       230 ~~~~~v~~Ll~~~--g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~-Ga~~~~~d~  284 (285)
T 1wdy_A          230 KHLGLVQRLLEQE--HIEINDTDSDGKTALLLAVELKLKKIAELLCKR-GASTDCGDL  284 (285)
T ss_dssp             TCHHHHHHHHHSS--SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SSCSCCSSC
T ss_pred             CCHHHHHHHHhcc--CCCccccCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCCcccc
Confidence            9999999999832  678899999999999999999999999999976 999998873

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-43  Score=321.36  Aligned_cols=265  Identities=22%  Similarity=0.217  Sum_probs=193.0

Q ss_pred             CCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCC
Q 038664           37 NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGN  116 (464)
Q Consensus        37 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~  116 (464)
                      +|+|+||.|+..|+.+++++|++.++++....+..|.||||+|+..|+.+++++|++.+++..          ..+..|.
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------~~~~~g~   73 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV----------LRKKNGA   73 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTCC
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc----------ccCCCCC
Confidence            355667777777777777777776666333336666677777777777777777776666532          4566667


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCC----------CCCCCCH
Q 038664          117 TPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHR----------GPNDLTL  186 (464)
Q Consensus       117 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~----------~~~~~~~  186 (464)
                      ||||+|+..|+.+++++|++.+++ ++..+..|.|||++|+..|+.+++++|++.+.++ +..          +..|.||
T Consensus        74 t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~  151 (285)
T 1wdy_A           74 TPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATA  151 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC-CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcH
Confidence            777777777777777777776666 3455666677777777777777777777766655 333          5667888


Q ss_pred             HHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCC----HHHHHHHhhcCCCccccccCCCCCcccccccCC
Q 038664          187 LHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGH----FEIACRLSDEDDTLAYERDCNGQSPLHLASENG  262 (464)
Q Consensus       187 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~----~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  262 (464)
                      ||.|+..++.+++++|++..+..++..+..|.||||+|+..++    .+++++|++.|++++ .++..|.||||+|++.|
T Consensus       152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~  230 (285)
T 1wdy_A          152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN-VRGERGKTPLILAVEKK  230 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS-CCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcC
Confidence            8888888888888888887333377788888888888888888    788888888888777 57778888888888888


Q ss_pred             cHHHHHHHHH-HCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccC
Q 038664          263 KLSLLKRLLH-SYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSD  318 (464)
Q Consensus       263 ~~~~v~~Ll~-~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d  318 (464)
                      +.+++++|++ .+.+ ++.+|..|+||||+|++.++.+++++|++.   |++++.+|
T Consensus       231 ~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~---Ga~~~~~d  283 (285)
T 1wdy_A          231 HLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKR---GASTDCGD  283 (285)
T ss_dssp             CHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH---SSCSCCSS
T ss_pred             CHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHHc---CCCCCccc
Confidence            8888888888 4444 588888888888888888888888888887   66677665

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.7e-44  Score=337.80  Aligned_cols=314  Identities=20%  Similarity=0.246  Sum_probs=224.9

Q ss_pred             ccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC
Q 038664            4 VARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG   83 (464)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g   83 (464)
                      +..+|+.++..|+.+.++.+++... .+.    .-.+++.-+...|+.+++++++..      ..+..|.||||+|+..+
T Consensus        37 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~g~t~L~~Aa~~~  105 (373)
T 2fo1_E           37 SQHSLLEASYDGYIKRQRNELQHYS-LYP----NPQGYGNGNDFLGDFNHTNLQIPT------EPEPESPIKLHTEAAGS  105 (373)
T ss_dssp             --------------------------------------------------------------------CCCHHHHHHHSS
T ss_pred             cccccccccCCccccchhhhhhhhc-ccc----CccccCCCCCcccccccccccccc------CCCCCCccHHHHHhcCC
Confidence            4567888898999998888876443 222    223566778888999999888654      35678999999999955


Q ss_pred             CHHHHHHHhcccCCCCCCcchHHHHhhcC-CCCCcHHHHHHHcCCHHHHHHHH--------HhCCccccccccCCCcHHH
Q 038664           84 NFGVAKIFMRPHGNGNNTGTFDDILRKQD-EEGNTPLHNAVRKCDGKMAFTMI--------RKDPELICYINKAGQSPLS  154 (464)
Q Consensus        84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll--------~~~~~~~~~~~~~g~t~l~  154 (464)
                       .+++++|+...            ++..+ ..|.||||+|+..|+.+++++|+        +.+.+ ++..|..|.||||
T Consensus       106 -~~~~~~L~~~~------------~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~-vn~~d~~g~TpL~  171 (373)
T 2fo1_E          106 -YAITEPITRES------------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VNAMDCDENTPLM  171 (373)
T ss_dssp             -SCCCSCCSTTT------------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-TTCCCTTSCCHHH
T ss_pred             -chHHHHhcccc------------ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-CcCCCCCCCCHHH
Confidence             47888876532            34566 78999999999999988877776        67777 5678899999999


Q ss_pred             HHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCc--hhhhhhcCCCCcHHHHHHHcC---C
Q 038664          155 LAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKR--DLINVLDKRDRNPLHYAAALG---H  229 (464)
Q Consensus       155 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~g~t~L~~a~~~~---~  229 (464)
                      +|+..|+.+++++|++++.++ +..+..|.||||+|+..++.+++++|++.+.  ..++..+..|.||||+|+..+   +
T Consensus       172 ~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~  250 (373)
T 2fo1_E          172 LAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQ  250 (373)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTH
T ss_pred             HHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcch
Confidence            999999999999999999987 8888999999999999999999999998773  237888999999999999988   8


Q ss_pred             HHHHHHHhhcCCCccc-------cccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHH
Q 038664          230 FEIACRLSDEDDTLAY-------ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVV  302 (464)
Q Consensus       230 ~~~v~~Ll~~~~~~~~-------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~  302 (464)
                      .+++++|++.|++.+.       ..+..|.||||+|+..|+.+++++|++.++..++.+|..|+||||+|+..|+.++++
T Consensus       251 ~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~  330 (373)
T 2fo1_E          251 VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM  330 (373)
T ss_dssp             HHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999988763       256689999999999999999999999985557999999999999999999999999


Q ss_pred             HHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccc
Q 038664          303 FISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVN  347 (464)
Q Consensus       303 ~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d  347 (464)
                      +|++.   +++++.+|..|+||||+|+..|+.+++++|+++ +++
T Consensus       331 ~Ll~~---gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~-~a~  371 (373)
T 2fo1_E          331 YLIQQ---GASVEAVDATDHTARQLAQANNHHNIVDIFDRC-RPE  371 (373)
T ss_dssp             HHHHT---TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT-C--
T ss_pred             HHHHc---CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhc-Ccc
Confidence            99987   788999999999999999999999999999975 554

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1e-41  Score=308.09  Aligned_cols=258  Identities=16%  Similarity=0.154  Sum_probs=207.2

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHhCC----------ccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCC
Q 038664          111 QDEEGNTPLHNAVRKCDGKMAFTMIRKDP----------ELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRG  180 (464)
Q Consensus       111 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~----------~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~  180 (464)
                      ....|.|+||+|+..|+.+.+..++..++          ......+..|.||||+|+..|+.+++++|++.+.++ +..+
T Consensus        11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~   89 (285)
T 3d9h_A           11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIIT   89 (285)
T ss_dssp             -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEEC
T ss_pred             cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcC
Confidence            45678999999999999877777665532          223456889999999999999999999999999887 8889


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCccccccc
Q 038664          181 PNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASE  260 (464)
Q Consensus       181 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  260 (464)
                      ..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+++..  .+..|.||||+|+.
T Consensus        90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~  166 (285)
T 3d9h_A           90 ADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAAR  166 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHHHHHH
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHH
Confidence            9999999999999999999999999887 88999999999999999999999999999999876  35569999999999


Q ss_pred             CCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHH
Q 038664          261 NGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL  340 (464)
Q Consensus       261 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  340 (464)
                      .|+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|++.   +++++. |..|+||||+|++.++.+++++|
T Consensus       167 ~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~-~~~g~t~L~~A~~~~~~~~v~~L  241 (285)
T 3d9h_A          167 RGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLES---GADVNQ-GKGQDSPLHAVVRTASEELACLL  241 (285)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHT---TCCTTC-CBTTBCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHC---CCCCCC-CCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999999988 599999999999999999999999999988   677774 88999999999999999999999


Q ss_pred             HhccccccccccccCCChHHhhccCchhhHHHhhc-CCC
Q 038664          341 ARNMRVNIRATNEKKQTALAIVQPSLHQNDILEGH-GGS  378 (464)
Q Consensus       341 l~~~~~d~~~~n~~g~t~l~~a~~~~~~~~~l~~~-g~~  378 (464)
                      +++ |+|++.+|.+|+||+++|........+|..+ |++
T Consensus       242 l~~-gad~~~~d~~g~t~l~~A~~~~~~~~~Ll~~~~a~  279 (285)
T 3d9h_A          242 MDF-GADTQAKNAEGKRPVELVPPESPLAQLFLEREGAS  279 (285)
T ss_dssp             HHT-TCCTTCCCTTSCCGGGGSCTTSHHHHHHHHHC---
T ss_pred             HHC-CCCCCCcCCCCCCHHHHhcCccHHHHHHHHhhccC
Confidence            976 9999999999999999999776666665554 543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=9e-43  Score=327.46  Aligned_cols=308  Identities=19%  Similarity=0.245  Sum_probs=223.3

Q ss_pred             CchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcH
Q 038664           39 DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTP  118 (464)
Q Consensus        39 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~  118 (464)
                      ..+|+.++..|+.+.++.++++..+..     .-.+++.-+...|+.+++++++..               ..+..|.||
T Consensus        38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~---------------~~~~~g~t~   97 (373)
T 2fo1_E           38 QHSLLEASYDGYIKRQRNELQHYSLYP-----NPQGYGNGNDFLGDFNHTNLQIPT---------------EPEPESPIK   97 (373)
T ss_dssp             ----------------------------------------------------------------------------CCCH
T ss_pred             ccccccccCCccccchhhhhhhhcccc-----CccccCCCCCcccccccccccccc---------------CCCCCCccH
Confidence            456788889999999999998776632     223566778888999999988743               467789999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCccccccc-cCCCcHHHHHHHcCCHHHHHHHH--------HhcCcCcCCCCCCCCCHHHH
Q 038664          119 LHNAVRKCDGKMAFTMIRKDPELICYIN-KAGQSPLSLAIDAGLTHIACCII--------KEKLSVLDHRGPNDLTLLHI  189 (464)
Q Consensus       119 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~A~~~g~~~~~~~Ll--------~~~~~~~~~~~~~~~~~l~~  189 (464)
                      ||+|+..+. +++++|+...   .+..+ ..|.||||+|+..|+.+++++|+        +.+.++ +..+..|.||||+
T Consensus        98 L~~Aa~~~~-~~~~~L~~~~---~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d~~g~TpL~~  172 (373)
T 2fo1_E           98 LHTEAAGSY-AITEPITRES---VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLML  172 (373)
T ss_dssp             HHHHHHSSS-CCCSCCSTTT---TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHH
T ss_pred             HHHHhcCCc-hHHHHhcccc---ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCCCCCCCHHHH
Confidence            999999654 7777776543   33455 78999999999999988877776        677776 8889999999999


Q ss_pred             HHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcC---CCccccccCCCCCcccccccCC---c
Q 038664          190 AIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDED---DTLAYERDCNGQSPLHLASENG---K  263 (464)
Q Consensus       190 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~tpL~~A~~~g---~  263 (464)
                      |+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.+   .+.. ..+..|.||||+|+..+   +
T Consensus       173 A~~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~d~~g~t~L~~A~~~~~~~~  250 (373)
T 2fo1_E          173 AVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE-ELDRNGMTALMIVAHNEGRDQ  250 (373)
T ss_dssp             HHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS-CCCTTSCCHHHHHHHSCSTTH
T ss_pred             HHHcChHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChh-hcCCCCCCHHHHHHHhCCcch
Confidence            9999999999999999988 7899999999999999999999999999988   4555 57889999999999998   9


Q ss_pred             HHHHHHHHHHCCCcccc--------cccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCch
Q 038664          264 LSLLKRLLHSYPDSIEF--------LDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFN  335 (464)
Q Consensus       264 ~~~v~~Ll~~~~~~~~~--------~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  335 (464)
                      .+++++|++++++. +.        .|..|+||||+|+..|+.+++++|++..  +.+++.+|..|+||||+|+..|+.+
T Consensus       251 ~~~v~~Ll~~g~~~-~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~n~~d~~g~TpL~~A~~~g~~~  327 (373)
T 2fo1_E          251 VASAKLLVEKGAKV-DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK--GSNKDKQDEDGKTPIMLAAQEGRIE  327 (373)
T ss_dssp             HHHHHHHHHHTCCS-SCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS--CCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHHCCCCc-ccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhc--CCCccCcCCCCCCHHHHHHHcCCHH
Confidence            99999999999884 54        5778999999999999999999999763  3789999999999999999999999


Q ss_pred             HHHHHHhccccccccccccCCChHHhhccCchhhHH--HhhcCC
Q 038664          336 IVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDI--LEGHGG  377 (464)
Q Consensus       336 ~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~~--l~~~g~  377 (464)
                      ++++|+++ |++++.+|..|+||+++|...++.+.+  |..+++
T Consensus       328 iv~~Ll~~-gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a  370 (373)
T 2fo1_E          328 VVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP  370 (373)
T ss_dssp             HHHHHHHT-TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred             HHHHHHHc-CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence            99999986 999999999999999999998887764  555554

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.4e-40  Score=300.76  Aligned_cols=252  Identities=21%  Similarity=0.241  Sum_probs=166.1

Q ss_pred             ccHHHHHHHHcCCHHHHHHHHhhcC----------CCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCC
Q 038664            4 VARVLFRALRRGDAATVRESARLNG----------NGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSE   73 (464)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~----------~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   73 (464)
                      ..+.||.|++.|+.+.+.+++...+          ..++..+..|+||||+||..|+.+++++|++.+++ ++.++..|.
T Consensus        15 ~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~~~~g~   93 (285)
T 3d9h_A           15 VPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHV   93 (285)
T ss_dssp             ---------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC-SCEECTTCC
T ss_pred             HHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCC
Confidence            3567788888888777777554432          12345677788888888888888888888888777 667777888


Q ss_pred             CHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHH
Q 038664           74 TPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPL  153 (464)
Q Consensus        74 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  153 (464)
                      ||||+|+..|+.+++++|++.+++.          +.++..|.||||+|+..|+.+++++|++.++++.  .+..|.|||
T Consensus        94 t~L~~A~~~g~~~~v~~Ll~~ga~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L  161 (285)
T 3d9h_A           94 SPLHEACLGGHLSCVKILLKHGAQV----------NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPI  161 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCS----------SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHH
T ss_pred             CHHHHHHHCCcHHHHHHHHHCCCCC----------CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHH
Confidence            8888888888888888888877663          3567778888888888888888888888777642  234477777


Q ss_pred             HHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHH
Q 038664          154 SLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIA  233 (464)
Q Consensus       154 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v  233 (464)
                      |+|+..|+.+++++|++.+.++ +..+..|.||||+|+..++.+++++|++.+.+ ++ .+..|.||||+|+..|+.+++
T Consensus       162 ~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~-~~~~g~t~L~~A~~~~~~~~v  238 (285)
T 3d9h_A          162 HEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVVRTASEELA  238 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC-TT-CCBTTBCHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC-CC-CCCCCCCHHHHHHHcCCHHHH
Confidence            7777777777777777777765 66677777777777777777777777777665 44 366777777777777777777


Q ss_pred             HHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHC
Q 038664          234 CRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSY  274 (464)
Q Consensus       234 ~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  274 (464)
                      ++|+++|+++. .+|..|+||||+|+  ++.+++++|+++.
T Consensus       239 ~~Ll~~gad~~-~~d~~g~t~l~~A~--~~~~~~~~Ll~~~  276 (285)
T 3d9h_A          239 CLLMDFGADTQ-AKNAEGKRPVELVP--PESPLAQLFLERE  276 (285)
T ss_dssp             HHHHHTTCCTT-CCCTTSCCGGGGSC--TTSHHHHHHHHHC
T ss_pred             HHHHHCCCCCC-CcCCCCCCHHHHhc--CccHHHHHHHHhh
Confidence            77777777666 56777777777777  3456777777763

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2e-41  Score=318.06  Aligned_cols=287  Identities=17%  Similarity=0.151  Sum_probs=190.9

Q ss_pred             CcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHh
Q 038664           30 GILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILR  109 (464)
Q Consensus        30 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  109 (464)
                      +.+..|..|.||||+||..|+.++|++|++.|++ ++..|..|.||||+|+..|+.+++++|++.+++.           
T Consensus        12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----------   79 (364)
T 3ljn_A           12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH-----------   79 (364)
T ss_dssp             ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-----------
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-----------
Confidence            4456788899999999999999999999999988 7889999999999999999999999999998853           


Q ss_pred             hcCCCCCcHHHHHHHcCCHHHHHHHHHh----CCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCC
Q 038664          110 KQDEEGNTPLHNAVRKCDGKMAFTMIRK----DPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLT  185 (464)
Q Consensus       110 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~  185 (464)
                       .+..|.||||+|+..|+.+++++|++.    +.........           .....+      .... .+..+..|.|
T Consensus        80 -~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-----------~~~~~~------~~~~-~~~~~~~g~t  140 (364)
T 3ljn_A           80 -SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNE-----------CDEREV------NEIG-SHVKHCKGQT  140 (364)
T ss_dssp             -CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTC-----------CCCCCE------EEET-TEEEEESCCC
T ss_pred             -cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhh-----------cchHhh------hhhc-cccCCCCCCC
Confidence             235789999999999999999999998    4442110000           000000      0000 1223444555


Q ss_pred             HHHHHHHcC--CHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCC-----ccccccCCCCCccccc
Q 038664          186 LLHIAIIKS--NFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDT-----LAYERDCNGQSPLHLA  258 (464)
Q Consensus       186 ~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~-----~~~~~~~~g~tpL~~A  258 (464)
                      |||+|+..|  +.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+++     .+ ..+..|.||||+|
T Consensus       141 ~L~~A~~~g~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~~~~g~t~L~~A  218 (364)
T 3ljn_A          141 ALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLD-YANKQGNSHLHWA  218 (364)
T ss_dssp             HHHHHHHSCGGGHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT-CCCTTCCCTTHHH
T ss_pred             HHHHHHHcCCchHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccc-ccCCCCCcHHHHH
Confidence            555555555  55666666665554 555566666666666666666666666666555     33 4566666666666


Q ss_pred             ccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchh---------hhhhccCCCCCcHHHHHH
Q 038664          259 SENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIE---------DMINSSDLEGNTPLHLAA  329 (464)
Q Consensus       259 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~---------~~~~~~d~~g~t~Lh~A~  329 (464)
                      +..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++.....         ......+..|+|||++|+
T Consensus       219 ~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa  297 (364)
T 3ljn_A          219 ILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAA  297 (364)
T ss_dssp             HTTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSS
T ss_pred             HHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhh
Confidence            666666666666666666 3666666666666666666666666666653211         111125667888888888


Q ss_pred             HcCCchHHHHHHhccccccccc
Q 038664          330 INNHFNIVLILARNMRVNIRAT  351 (464)
Q Consensus       330 ~~~~~~~v~~Ll~~~~~d~~~~  351 (464)
                      ..++.+.+..|+.. +++....
T Consensus       298 ~~~~~~~v~~ll~~-~~~~~~~  318 (364)
T 3ljn_A          298 ADPSKQEVLQLLQE-KLDEVVR  318 (364)
T ss_dssp             CCHHHHHHHHHHHH-HHHHHHT
T ss_pred             hccCHHHHHHHHHH-HHHHHhh
Confidence            88887777777765 5554333

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=4e-41  Score=299.24  Aligned_cols=230  Identities=23%  Similarity=0.242  Sum_probs=110.5

Q ss_pred             CcccccCCCCchhHHHHhcC-------------CHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccC
Q 038664           30 GILDMSQNRDTALHIAARFG-------------HKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG   96 (464)
Q Consensus        30 ~~~~~~~~g~t~Lh~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~   96 (464)
                      +++.+|.+|+||||+|+..|             +.+++++|++.|+++....+..|.||||+|+..|+.+++++|++.++
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~   81 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA   81 (253)
T ss_dssp             --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            56678888999999999877             67777777777777555567777777777777777777777777776


Q ss_pred             CCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCc
Q 038664           97 NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVL  176 (464)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~  176 (464)
                      +.          +.++..|.||||+|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|++.+.++ 
T Consensus        82 ~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-  150 (253)
T 1yyh_A           82 DA----------NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-  150 (253)
T ss_dssp             CT----------TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-
T ss_pred             CC----------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-
Confidence            63          3566677777777777777777777777666444555666666666666666666666666655544 


Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCccc
Q 038664          177 DHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLH  256 (464)
Q Consensus       177 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~  256 (464)
                      +..+..|.||||+|+..++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++. .+|..|.||++
T Consensus       151 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~  228 (253)
T 1yyh_A          151 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFANRD-ITDHMDRLPRD  228 (253)
T ss_dssp             TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc-ccccCCCCHHH
Confidence            44444444555555544444444444444444 34444444444444444444444444444444443 23444444444


Q ss_pred             ccccCCcHHHHHHHHH
Q 038664          257 LASENGKLSLLKRLLH  272 (464)
Q Consensus       257 ~A~~~g~~~~v~~Ll~  272 (464)
                      +|+++|+.+++++|..
T Consensus       229 ~A~~~g~~~i~~~l~~  244 (253)
T 1yyh_A          229 IAQERMHHDIVRLLDL  244 (253)
T ss_dssp             HHHHTTCHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHH
Confidence            4444444444444443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=9.6e-42  Score=320.26  Aligned_cols=274  Identities=17%  Similarity=0.143  Sum_probs=220.1

Q ss_pred             ccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccc
Q 038664           65 VSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICY  144 (464)
Q Consensus        65 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  144 (464)
                      .+..|..|.||||+|+..|+.++|++|++.+++.          +.++..|.||||+|+..|+.+++++|++.+++.   
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~----------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---   79 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP----------TIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---   79 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT----------TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc----------cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---
Confidence            3456778889999999999999999999888774          467888899999999999999999999888753   


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHH
Q 038664          145 INKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYA  224 (464)
Q Consensus       145 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a  224 (464)
                      .+..|.||||+|+..|+.+++++|++.+...       +..+-..........       ......+..+..|.||||+|
T Consensus        80 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~t~L~~A  145 (364)
T 3ljn_A           80 SLWHGQKPIHLAVMANKTDLVVALVEGAKER-------GQMPESLLNECDERE-------VNEIGSHVKHCKGQTALHWC  145 (364)
T ss_dssp             CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHH-------TCCHHHHHTCCCCCC-------EEEETTEEEEESCCCHHHHH
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHhcccc-------CCCHHHHHhhcchHh-------hhhhccccCCCCCCCHHHHH
Confidence            3457888888888888888888888873221       000000000000000       00011344788999999999


Q ss_pred             HHcC--CHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCc----ccccccCCCchhHHHHhcCch
Q 038664          225 AALG--HFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDS----IEFLDKKNRNILHLAAQNGHA  298 (464)
Q Consensus       225 ~~~~--~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~----~~~~d~~g~t~L~~A~~~~~~  298 (464)
                      +..|  +.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|++++++.    ++..|..|+||||+|+..|+.
T Consensus       146 ~~~g~~~~~~v~~Ll~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~  224 (364)
T 3ljn_A          146 VGLGPEYLEMIKILVQLGASPT-AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE  224 (364)
T ss_dssp             HHSCGGGHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCH
T ss_pred             HHcCCchHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCH
Confidence            9999  9999999999999988 68899999999999999999999999999883    588999999999999999999


Q ss_pred             HHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhcccccccc------------ccccCCChHHhhccCc
Q 038664          299 NVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRA------------TNEKKQTALAIVQPSL  366 (464)
Q Consensus       299 ~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~------------~n~~g~t~l~~a~~~~  366 (464)
                      +++++|++.   +++++.+|..|+||||+|++.|+.+++++|+++ |++++.            .+..+.||+..|...+
T Consensus       225 ~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~  300 (364)
T 3ljn_A          225 DVAMRFVEM---GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK-TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP  300 (364)
T ss_dssp             HHHHHHHTT---TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH-SCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCH
T ss_pred             HHHHHHHHc---CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc-CCchhhhcCcccCcccccccccccccchhhhhcc
Confidence            999999997   788999999999999999999999999999986 666533            6778999999999887


Q ss_pred             hhhH
Q 038664          367 HQND  370 (464)
Q Consensus       367 ~~~~  370 (464)
                      +.+.
T Consensus       301 ~~~~  304 (364)
T 3ljn_A          301 SKQE  304 (364)
T ss_dssp             HHHH
T ss_pred             CHHH
Confidence            6554

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.6e-40  Score=295.40  Aligned_cols=230  Identities=19%  Similarity=0.191  Sum_probs=145.5

Q ss_pred             HhhcCCCCCcHHHHHHHcC-------------CHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 038664          108 LRKQDEEGNTPLHNAVRKC-------------DGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLS  174 (464)
Q Consensus       108 ~~~~~~~g~t~L~~A~~~~-------------~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~  174 (464)
                      ++.+|.+|.||||+|+..|             +.+++++|++.++++....+..|.||||+|+..|+.+++++|++.+.+
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   82 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD   82 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            5678899999999999977             777777787777776666677777888888877777778877777776


Q ss_pred             CcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCc
Q 038664          175 VLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSP  254 (464)
Q Consensus       175 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tp  254 (464)
                      + +..+..|.||||+|+..++.+++++|++.++..++..+..|.||||+|+..|+.+++++|++.|++++ .++..|.||
T Consensus        83 ~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~  160 (253)
T 1yyh_A           83 A-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSA  160 (253)
T ss_dssp             T-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT-CBCTTSCBH
T ss_pred             C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC-CcCCCCCCH
Confidence            6 66777777777777777777777777777764467777777777777777777777777777777766 466777777


Q ss_pred             ccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCc
Q 038664          255 LHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHF  334 (464)
Q Consensus       255 L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~  334 (464)
                      ||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++.   +++++.+|..|+||||+|++.|+.
T Consensus       161 L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~g~~  236 (253)
T 1yyh_A          161 LHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDH---FANRDITDHMDRLPRDIAQERMHH  236 (253)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHc---CCCccccccCCCCHHHHHHHcCCH
Confidence            7777777777777777777776 477777777777777777777777777776   566777777777777777777777


Q ss_pred             hHHHHHHhc
Q 038664          335 NIVLILARN  343 (464)
Q Consensus       335 ~~v~~Ll~~  343 (464)
                      +++++|...
T Consensus       237 ~i~~~l~~~  245 (253)
T 1yyh_A          237 DIVRLLDLE  245 (253)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHH
Confidence            777777643

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.6e-40  Score=299.45  Aligned_cols=264  Identities=19%  Similarity=0.192  Sum_probs=170.1

Q ss_pred             ccccCCCCchhHHHHhcCCHHHHHHHHHhCCc--cccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHh
Q 038664           32 LDMSQNRDTALHIAARFGHKNVVMEILELRPD--LVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILR  109 (464)
Q Consensus        32 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  109 (464)
                      +.++..|+||||+||..|+.++|++|++.+++  .++.++..|.||||+|+..|+.+++++|+++|++.+          
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~----------   72 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL----------   72 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS----------
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------
Confidence            35677788888888888888888888887665  256677788888888888888888888888777643          


Q ss_pred             hcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHH
Q 038664          110 KQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHI  189 (464)
Q Consensus       110 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~  189 (464)
                      .++..|.||||+|+..|+.+++++|++.++.......   ..  .              +....   ...          
T Consensus        73 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~---~~--~--------------~~~~~---~~~----------  120 (282)
T 1oy3_D           73 VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS---DT--Y--------------LTQSQ---DCT----------  120 (282)
T ss_dssp             CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------------------------------------------
T ss_pred             CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhH---HH--H--------------hhccc---ccC----------
Confidence            5677778888888888888888888777665321100   00  0              00000   001          


Q ss_pred             HHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHH-HHHHHhhcCCCccccccCCCCCcccccccCCcHHHHH
Q 038664          190 AIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFE-IACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLK  268 (464)
Q Consensus       190 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~-~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  268 (464)
                                              ...+.++++.++..+... ....+...+.... ..+..|.||||+|+..|+.++++
T Consensus       121 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~  175 (282)
T 1oy3_D          121 ------------------------PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE-AENYDGHTPLHVAVIHKDAEMVR  175 (282)
T ss_dssp             -----------------------------------------------CCCGGGGTT-CCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ------------------------cchhcchhhhccccccchhhhhhhhhhhhcCC-CcCCCCcCHHHHHHHcCCHHHHH
Confidence                                    112223333333332222 2223333333443 56777888888888888888888


Q ss_pred             HHHHHCCCccccccc-CCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccc
Q 038664          269 RLLHSYPDSIEFLDK-KNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVN  347 (464)
Q Consensus       269 ~Ll~~~~~~~~~~d~-~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d  347 (464)
                      +|++++++. +..+. .|+||||+|+..|+.+++++|++.   +++++.+|..|+||||+|++.++.+++++|+++ |++
T Consensus       176 ~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~  250 (282)
T 1oy3_D          176 LLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKA---GADPTARMYGGRTPLGSALLRPNPILARLLRAH-GAP  250 (282)
T ss_dssp             HHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHT-TCC
T ss_pred             HHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHc---CCCCcccccCCCCHHHHHHHcCCcHHHHHHHHc-CCC
Confidence            888888874 66664 499999999999999999999987   788999999999999999999999999999976 999


Q ss_pred             cccccccCCChHHhhccCch
Q 038664          348 IRATNEKKQTALAIVQPSLH  367 (464)
Q Consensus       348 ~~~~n~~g~t~l~~a~~~~~  367 (464)
                      ++.+|..|.||+++|.....
T Consensus       251 ~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          251 EPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             CCCCC---------------
T ss_pred             cCcCCCcccccccccCCccc
Confidence            99999999999999985543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=9.2e-39  Score=281.41  Aligned_cols=229  Identities=19%  Similarity=0.287  Sum_probs=178.7

Q ss_pred             CcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHh
Q 038664           30 GILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILR  109 (464)
Q Consensus        30 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  109 (464)
                      +++..+..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|++.+++.+          
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------   71 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD----------   71 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC----------
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC----------
Confidence            5567788899999999999999999999999888 67788899999999999999999999999887743          


Q ss_pred             hcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHH
Q 038664          110 KQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHI  189 (464)
Q Consensus       110 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~  189 (464)
                      .++..|.||||+|+..|+.+++++|++.++...+..+..|.|||++|+..|+.+++++|++.+.++ +..+..|.||||+
T Consensus        72 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~  150 (237)
T 3b7b_A           72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHW  150 (237)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHH
Confidence            677788899999999999999999888885556667777888888888888888888888877765 6666677777777


Q ss_pred             HHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHH
Q 038664          190 AIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKR  269 (464)
Q Consensus       190 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  269 (464)
                      |+..++.+++++|++.+.+ ++..|..|.||||+|++.++.+++++|+++|+++. .+|..|.||||+|+..|+.+.+..
T Consensus       151 A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~-~~d~~g~t~l~~A~~~~~~~~~~~  228 (237)
T 3b7b_A          151 AAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT-LKNKEGETPLQCASLNSQVWSALQ  228 (237)
T ss_dssp             HHHHCCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHSCTTCHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC-ccCCCCCCHHHHHHHHHHHHHHHH
Confidence            7777777777777777665 56666777777777777777777777777776665 466667777777777776655555


Q ss_pred             HHH
Q 038664          270 LLH  272 (464)
Q Consensus       270 Ll~  272 (464)
                      |++
T Consensus       229 l~~  231 (237)
T 3b7b_A          229 MSK  231 (237)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.7e-39  Score=284.71  Aligned_cols=229  Identities=17%  Similarity=0.234  Sum_probs=196.8

Q ss_pred             ccccCCCCchhHHHHhcCCHHHHHHHHH----hCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHH
Q 038664           32 LDMSQNRDTALHIAARFGHKNVVMEILE----LRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDI  107 (464)
Q Consensus        32 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  107 (464)
                      +..|.+|+||||+||..|+.+++++|++    .+.+ ++..+..|.||||+|+..|+.+++++|++.+++..        
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------   73 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM--------   73 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--------
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc--------
Confidence            3578899999999999999999999997    4555 78889999999999999999999999999988744        


Q ss_pred             HhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCc---cccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCC-CCC
Q 038664          108 LRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPE---LICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRG-PND  183 (464)
Q Consensus       108 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~---~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~~  183 (464)
                        ..+..|.||||+|+..++.+++++|++.++.   .....+..|.||||+|+..|+.+++++|++.+.++ +..+ ..|
T Consensus        74 --~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g  150 (241)
T 1k1a_A           74 --ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSG  150 (241)
T ss_dssp             --CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTC
T ss_pred             --ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCC
Confidence              6788999999999999999999999999872   25567888999999999999999999999998887 5555 788


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCc
Q 038664          184 LTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGK  263 (464)
Q Consensus       184 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  263 (464)
                      .||||+|+..++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++. .++..|.|||++|+..|+
T Consensus       151 ~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~  228 (241)
T 1k1a_A          151 RSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS-LKNCHNDTPLMVARSRRV  228 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCTTTTCSSHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC-CcCCCCCCHHHHHHhcCc
Confidence            9999999999999999999999887 78888999999999999999999999999998887 688889999999999999


Q ss_pred             HHHHHHHHHHC
Q 038664          264 LSLLKRLLHSY  274 (464)
Q Consensus       264 ~~~v~~Ll~~~  274 (464)
                      .++++.|++.+
T Consensus       229 ~~i~~~l~~~~  239 (241)
T 1k1a_A          229 IDILRGKATRP  239 (241)
T ss_dssp             HHHHTC-----
T ss_pred             HHHHhhhccCC
Confidence            99999888764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.4e-39  Score=294.54  Aligned_cols=247  Identities=17%  Similarity=0.136  Sum_probs=159.7

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcc--ccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCH
Q 038664          109 RKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPEL--ICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTL  186 (464)
Q Consensus       109 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~--~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~  186 (464)
                      +.+|..|.||||+|+..|+.+++++|++.++..  .+..+..|.||||+|+..|+.+++++|++++.++ +..+..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tp   81 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTA   81 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCH
Confidence            356667777777777777777777777765542  3455666667777777666666666666666665 5556666666


Q ss_pred             HHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHH
Q 038664          187 LHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSL  266 (464)
Q Consensus       187 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  266 (464)
                      ||+|+..++.+++++|++.++.. .....  .+                ++....   ......+.++++.++..+....
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~--~~----------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  139 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSH-PRDAS--DT----------------YLTQSQ---DCTPDTSHAPAAVDSQPNPENE  139 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSS-CCCC----------------------------------------------------
T ss_pred             HHHHHHcCCcchhHhhhccCCCC-chhhH--HH----------------Hhhccc---ccCcchhcchhhhccccccchh
Confidence            66666666666666666655431 10000  00                000000   0123456678887777665555


Q ss_pred             HHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCC-CCcHHHHHHHcCCchHHHHHHhccc
Q 038664          267 LKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLE-GNTPLHLAAINNHFNIVLILARNMR  345 (464)
Q Consensus       267 v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~-g~t~Lh~A~~~~~~~~v~~Ll~~~~  345 (464)
                      +..++......++..+..|+||||+|+..|+.+++++|++.   +++++.++.. |+||||+|++.|+.+++++|+++ |
T Consensus       140 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-g  215 (282)
T 1oy3_D          140 EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA---GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-G  215 (282)
T ss_dssp             ----CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH---TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-T
T ss_pred             hhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc-C
Confidence            44444333334688899999999999999999999999987   7888988855 99999999999999999999976 9


Q ss_pred             cccccccccCCChHHhhccCchhhH--HHhhcCCCCCCC
Q 038664          346 VNIRATNEKKQTALAIVQPSLHQND--ILEGHGGSASGT  382 (464)
Q Consensus       346 ~d~~~~n~~g~t~l~~a~~~~~~~~--~l~~~g~~~~~~  382 (464)
                      ++++.+|..|+|||++|...++.+.  +|..+|+.+...
T Consensus       216 ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~  254 (282)
T 1oy3_D          216 ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPED  254 (282)
T ss_dssp             CCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCC
T ss_pred             CCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcC
Confidence            9999999999999999998888665  488899887543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.8e-38  Score=278.43  Aligned_cols=226  Identities=21%  Similarity=0.251  Sum_probs=177.1

Q ss_pred             CCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCC
Q 038664           36 QNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEG  115 (464)
Q Consensus        36 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g  115 (464)
                      ..+++|||.|+..|+.+.+++|++.++...+..+..|.||||+|+..|+.+++++|++.+++.+          .++..|
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------~~~~~g   73 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN----------DKDDAG   73 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC----------CCCTTS
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC----------CcCCCC
Confidence            3567889999999999999999988887777888889999999999999999999998887643          677788


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCC
Q 038664          116 NTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSN  195 (464)
Q Consensus       116 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~  195 (464)
                      .||||+|+..|+.+++++|++.+++ .+..+..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..++
T Consensus        74 ~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~  151 (231)
T 3aji_A           74 WSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGN  151 (231)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             CCHHHHHHHcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCC
Confidence            8888888888888888888888877 4566777888888888888888888888877765 6666777777777777777


Q ss_pred             HHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCC
Q 038664          196 FVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYP  275 (464)
Q Consensus       196 ~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  275 (464)
                      .+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++. .++..|.||+++|+..++.+++++|+++++
T Consensus       152 ~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a  229 (231)
T 3aji_A          152 LKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY-IENKEEKTPLQVAKGGLGLILKRLAEGEEA  229 (231)
T ss_dssp             HHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence            7777777777665 66667777777777777777777777777777665 566777777777777777777777776654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=3.6e-38  Score=277.64  Aligned_cols=219  Identities=22%  Similarity=0.322  Sum_probs=147.4

Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHH
Q 038664          145 INKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYA  224 (464)
Q Consensus       145 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a  224 (464)
                      .+..|.||||+|+..|+.+++++|++++.++ +..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||||+|
T Consensus         7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A   84 (237)
T 3b7b_A            7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGSTCLHLA   84 (237)
T ss_dssp             SSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-CCCCCTTSCCHHHHH
T ss_pred             ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHH
Confidence            3444555555555555555555555554443 44445555555555555555555555555544 455566666777777


Q ss_pred             HHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHH
Q 038664          225 AALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI  304 (464)
Q Consensus       225 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L  304 (464)
                      +..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++++++ ++.++..|.||||+|+..|+.+++++|
T Consensus        85 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~L  163 (237)
T 3b7b_A           85 AKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEIL  163 (237)
T ss_dssp             HHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            7777777777777666333335666677777777777777777777777766 477777788888888888888888888


Q ss_pred             hcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCchhhH
Q 038664          305 SKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQND  370 (464)
Q Consensus       305 ~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~  370 (464)
                      ++.   +.+++.+|..|+||||+|++.++.+++++|+++ |+|++.+|..|+||+++|...++...
T Consensus       164 l~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~~~~~~  225 (237)
T 3b7b_A          164 LAA---KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCASLNSQVWS  225 (237)
T ss_dssp             HTT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHSCTTCHHHH
T ss_pred             HHc---CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc-CCCCCccCCCCCCHHHHHHHHHHHHH
Confidence            776   567777788888888888888888888888865 88888888888888888887766543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2e-38  Score=278.13  Aligned_cols=223  Identities=21%  Similarity=0.250  Sum_probs=151.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHH
Q 038664          113 EEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAII  192 (464)
Q Consensus       113 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~  192 (464)
                      ..+.+|||.|+..|+.+.++.|++.++......+..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+.
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   82 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAAS   82 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHH
Confidence            456778888888888888888887777666667777777777777777777777777777665 6666667777777777


Q ss_pred             cCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHH
Q 038664          193 KSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLH  272 (464)
Q Consensus       193 ~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  272 (464)
                      .++.+++++|++.+.+ ++..+..|.||||+|+..++.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|++
T Consensus        83 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~  160 (231)
T 3aji_A           83 AGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYDATAMHRAAAKGNLKMVHILLF  160 (231)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            7777777777776665 56666666677777776666666666666666655 455566666666666666666666666


Q ss_pred             HCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHh
Q 038664          273 SYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILAR  342 (464)
Q Consensus       273 ~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  342 (464)
                      .+.+ ++.+|..|+||||+|+..++.+++++|++.   +++++.+|..|.||||+|+..++.+++++|++
T Consensus       161 ~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~  226 (231)
T 3aji_A          161 YKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQ---GASIYIENKEEKTPLQVAKGGLGLILKRLAEG  226 (231)
T ss_dssp             TTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHH
T ss_pred             cCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcc
Confidence            6555 355666666666666666666666666655   45556666666666666666666666666654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=7.1e-39  Score=282.95  Aligned_cols=221  Identities=22%  Similarity=0.272  Sum_probs=126.1

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHH----hCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCC
Q 038664          109 RKQDEEGNTPLHNAVRKCDGKMAFTMIR----KDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDL  184 (464)
Q Consensus       109 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~  184 (464)
                      +.+|.+|.||||+|+..|+.+++++|++    .+.+ .+..+..|.||||+|+..|+.+++++|++.+.++ +..+..|.
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~   80 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQ   80 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCC
Confidence            3556667777777777777777766665    2333 3445555666666666666666666666655554 44455555


Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCch---hhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccC
Q 038664          185 TLLHIAIIKSNFVVMAKILEAKRD---LINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASEN  261 (464)
Q Consensus       185 ~~l~~a~~~~~~~~~~~ll~~~~~---~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  261 (464)
                      ||||+|+..++.+++++|++.++.   .++.                                  .+..|.||||+|+..
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~----------------------------------~~~~g~t~L~~A~~~  126 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEA----------------------------------RNYDGLTALHVAVNT  126 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTC----------------------------------CCTTSCCHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccccc----------------------------------cCcCCCcHHHHHHHc
Confidence            555555555555555555555431   1333                                  444455555555555


Q ss_pred             CcHHHHHHHHHHCCCcccccc-cCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHH
Q 038664          262 GKLSLLKRLLHSYPDSIEFLD-KKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL  340 (464)
Q Consensus       262 g~~~~v~~Ll~~~~~~~~~~d-~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  340 (464)
                      |+.+++++|++.+++. +..+ ..|.||||+|+..|+.+++++|++.   +.+++.+|..|+||||+|++.|+.+++++|
T Consensus       127 ~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  202 (241)
T 1k1a_A          127 ECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQH---GANVNAQMYSGSSALHSASGRGLLPLVRTL  202 (241)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            5555555555555542 4444 5566666666666666666666655   455666666666666666666666666666


Q ss_pred             HhccccccccccccCCChHHhhccCchhhH
Q 038664          341 ARNMRVNIRATNEKKQTALAIVQPSLHQND  370 (464)
Q Consensus       341 l~~~~~d~~~~n~~g~t~l~~a~~~~~~~~  370 (464)
                      +++ |+|++.+|..|+||+++|...++.+.
T Consensus       203 l~~-ga~~~~~~~~g~tpl~~A~~~~~~~i  231 (241)
T 1k1a_A          203 VRS-GADSSLKNCHNDTPLMVARSRRVIDI  231 (241)
T ss_dssp             HHT-TCCTTCCCTTSCCTTTTCSSHHHHHH
T ss_pred             Hhc-CCCCCCcCCCCCCHHHHHHhcCcHHH
Confidence            654 66666666666666666665555444

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=7e-38  Score=274.07  Aligned_cols=217  Identities=20%  Similarity=0.234  Sum_probs=171.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhC--chhhhh-hcCCCCcHHHHHH
Q 038664          149 GQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAK--RDLINV-LDKRDRNPLHYAA  225 (464)
Q Consensus       149 g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~-~~~~g~t~L~~a~  225 (464)
                      |.||||.|+..|+.+++++|++.+.......+..|.||||+|+..++.+++++|++.+  .+ ++. .+..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN-LDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC-GGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc-ccccCCCCCCCHHHHHH
Confidence            4555666666666666666665555544445666666666666666666666666666  33 333 6778889999999


Q ss_pred             HcCCHHHHHHHhhcC--CCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHH
Q 038664          226 ALGHFEIACRLSDED--DTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVF  303 (464)
Q Consensus       226 ~~~~~~~v~~Ll~~~--~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~  303 (464)
                      ..|+.+++++|++.+  .+.. ..+..|.||||+|+..|+.+++++|++++.+ ++.+|..|+||||+|+..|+.+++++
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~  158 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIEL  158 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCcccc-cCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999999887  5555 5778899999999999999999999999888 58899999999999999999999999


Q ss_pred             HhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCchhhH
Q 038664          304 ISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQND  370 (464)
Q Consensus       304 L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~  370 (464)
                      |++.+  ..+++.+|..|+||||+|+..|+.+++++|+++.|+|++.+|.+|+||+++|.+.+..+.
T Consensus       159 Ll~~g--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~~~~~  223 (228)
T 2dzn_A          159 LCGLG--KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKF  223 (228)
T ss_dssp             HHTTT--CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTTHHHH
T ss_pred             HHhcC--cccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHHHHHH
Confidence            99873  177899999999999999999999999999955699999999999999999986544433

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.6e-37  Score=271.73  Aligned_cols=214  Identities=21%  Similarity=0.254  Sum_probs=165.2

Q ss_pred             CCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhh-cCCCCC
Q 038664           38 RDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRK-QDEEGN  116 (464)
Q Consensus        38 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~-~~~~g~  116 (464)
                      |+||||+|+..|+.+++++|++.+++.....+..|.||||+|+..|+.+++++|++.+++..        +.. .+..|.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~--------~~~~~~~~g~   73 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN--------LDDYPDDSGW   73 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC--------GGGCCCTTSC
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc--------ccccCCCCCC
Confidence            67999999999999999999999988777788999999999999999999999999885544        334 778888


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhC--CccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcC
Q 038664          117 TPLHNAVRKCDGKMAFTMIRKD--PELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKS  194 (464)
Q Consensus       117 t~L~~A~~~~~~~~~~~Ll~~~--~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~  194 (464)
                      ||||+|+..|+.+++++|++.+  ++ .+..+..|.||||+|+..|+.+++++|++++.++ +..+..|.||||+|+..+
T Consensus        74 t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~  151 (228)
T 2dzn_A           74 TPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVG  151 (228)
T ss_dssp             CHHHHHHHHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTT
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcC
Confidence            9999998888888888888887  44 4566777888888888888888888888777765 666677777777777777


Q ss_pred             CHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHh-hcCCCccccccCCCCCcccccccCC
Q 038664          195 NFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLS-DEDDTLAYERDCNGQSPLHLASENG  262 (464)
Q Consensus       195 ~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll-~~~~~~~~~~~~~g~tpL~~A~~~g  262 (464)
                      +.+++++|++.++..++..|..|+||||+|+..|+.+++++|+ +.|+++. .+|..|.||+++|+..+
T Consensus       152 ~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~-~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD-LVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             CHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC-CBCTTSCBGGGGCSSTT
T ss_pred             CHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCC-ccCCCCCcHHHHHHHHH
Confidence            7777777777763336666777777777777777777777777 6666665 46667777777776553

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.2e-37  Score=281.42  Aligned_cols=239  Identities=16%  Similarity=0.150  Sum_probs=215.3

Q ss_pred             HHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHH
Q 038664           11 ALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKI   90 (464)
Q Consensus        11 A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~   90 (464)
                      +++..+.+.++++|...  +++..|..|.||||+|+..|+.++|++|++.|++ ++..  +|.||||+|+..|+.+++++
T Consensus         6 ~i~~~~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~--~g~t~L~~A~~~g~~~~v~~   80 (285)
T 3kea_A            6 RINTWKSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLL--ENEFPLHQAATLEDTKIVKI   80 (285)
T ss_dssp             TGGGCCHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-GSCC--TTCCHHHHHTTSSSCHHHHH
T ss_pred             HHHhcCHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCC--CCCCHHHHHHHcCCHHHHHH
Confidence            46788899999999876  6788999999999999999999999999999988 5545  59999999999999999999


Q ss_pred             HhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCC-CcHHHHHHHcCCHHHHHHHH
Q 038664           91 FMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAG-QSPLSLAIDAGLTHIACCII  169 (464)
Q Consensus        91 Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g-~t~l~~A~~~g~~~~~~~Ll  169 (464)
                      |++++++.          +.++..|.||||+|+..|+.+++++|++.+++ ++..+..| .||||+|+..|+.+++++|+
T Consensus        81 Ll~~ga~~----------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll  149 (285)
T 3kea_A           81 LLFSGLDD----------SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFL  149 (285)
T ss_dssp             HHHTTCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHH
T ss_pred             HHHCCCCC----------CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999884          47889999999999999999999999999988 46778888 89999999999999999999


Q ss_pred             HhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcH-HHHHHHcCCHHHHHHHhhcCCCcccccc
Q 038664          170 KEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNP-LHYAAALGHFEIACRLSDEDDTLAYERD  248 (464)
Q Consensus       170 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~-L~~a~~~~~~~~v~~Ll~~~~~~~~~~~  248 (464)
                      +++.+..+.  ..|.||||+|+..++.+++++|++.+.+ ++..+..|.|| ||+|+..|+.+++++|+++|++++. .+
T Consensus       150 ~~g~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~-~~  225 (285)
T 3kea_A          150 SEIPSTFDL--AILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS-AN  225 (285)
T ss_dssp             TTSCTTCCC--STHHHHHHHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTT-TT
T ss_pred             hCCCccccc--cCCccHHHHHHHcChHHHHHHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC-CC
Confidence            998865222  2789999999999999999999999887 89999999998 9999999999999999999998873 33


Q ss_pred             CCCCCcccccccCCcHHHHHHHHHHCCC
Q 038664          249 CNGQSPLHLASENGKLSLLKRLLHSYPD  276 (464)
Q Consensus       249 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  276 (464)
                             +.|+..|+.+++++|+++|.+
T Consensus       226 -------~~a~~~~~~~iv~~Ll~~g~~  246 (285)
T 3kea_A          226 -------LENVLLDDAEIAKMIIEKHVE  246 (285)
T ss_dssp             -------GGGGTTTCHHHHHHHHHHHHH
T ss_pred             -------hhhhhcCCHHHHHHHHHcCCC
Confidence                   477889999999999999876

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2e-38  Score=283.00  Aligned_cols=225  Identities=17%  Similarity=0.171  Sum_probs=138.9

Q ss_pred             ccCCCCchhHHHHhcCCHHHHHHHHHhCCcc-------ccccccCCCCHHHHHHHhCCH-HHHHHHhcccCCCCCCcchH
Q 038664           34 MSQNRDTALHIAARFGHKNVVMEILELRPDL-------VSVENHKSETPMHVAARAGNF-GVAKIFMRPHGNGNNTGTFD  105 (464)
Q Consensus        34 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-------~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~  105 (464)
                      .|..+.++|+.||..|+.++|++|++.+++.       ++..+..|.|||+.|+..++. +++++|++.|++.       
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-------   79 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-------   79 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-------
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-------
Confidence            4555667888888888888888888877653       344566677888887776654 4677777777763       


Q ss_pred             HHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCC
Q 038664          106 DILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLT  185 (464)
Q Consensus       106 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~  185 (464)
                         +.+|.+|.||||+|+..|+.+++++|++.+++ ....+..|.||++.|+..++.+++++|++.+.++ +..+..|.|
T Consensus        80 ---n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~T  154 (269)
T 4b93_B           80 ---NVTSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNT  154 (269)
T ss_dssp             ---TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCC
T ss_pred             ---CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCC
Confidence               36677777888888887777788877777776 3566677777777777777777777777777766 666777777


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCc-H
Q 038664          186 LLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGK-L  264 (464)
Q Consensus       186 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-~  264 (464)
                      |||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+++++ .
T Consensus       155 pL~~A~~~g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~-~~d~~G~TpL~~A~~~~~i~  232 (269)
T 4b93_B          155 PLIYACSGGHHELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ-VLNKRQRTAVDCAEQNSKIM  232 (269)
T ss_dssp             HHHHHHHTTCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCSGGGSCTTCHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHhCCcHH
Confidence            77777777777777777777766 67777777777777777777777777777777666 567777777777776665 3


Q ss_pred             HHHHHHHH
Q 038664          265 SLLKRLLH  272 (464)
Q Consensus       265 ~~v~~Ll~  272 (464)
                      ++++.|..
T Consensus       233 ~lL~~l~~  240 (269)
T 4b93_B          233 ELLQVVPS  240 (269)
T ss_dssp             HHTTC---
T ss_pred             HHHHHHHH
Confidence            44444433

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.3e-39  Score=285.89  Aligned_cols=230  Identities=19%  Similarity=0.283  Sum_probs=162.8

Q ss_pred             ccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCH-HHHHHHHHhCCcccccc
Q 038664           67 VENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDG-KMAFTMIRKDPELICYI  145 (464)
Q Consensus        67 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-~~~~~Ll~~~~~~~~~~  145 (464)
                      .+|..+.+||+.||..|+.++|++|++.++.....  ....++..+..+.|||++|+..+.. .+++.|++.|++ ++..
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~--~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad-vn~~   82 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLED--AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG-VNVT   82 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC------------------------------------------CCCC-TTCC
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccc--ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC-CCCc
Confidence            46777889999999999999999999988764311  1223556778889999999887765 478888888888 4677


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHH
Q 038664          146 NKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAA  225 (464)
Q Consensus       146 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~  225 (464)
                      |.+|.||||+|+..|+.+++++|++.+.++ +..+..|.||++.|+..++.++++.|++.+.+ ++..|..|+||||+|+
T Consensus        83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~  160 (269)
T 4b93_B           83 SQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYAC  160 (269)
T ss_dssp             CTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHH
Confidence            888999999999999999999999988887 77788888999999988888988888888877 7888888888888888


Q ss_pred             HcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHh
Q 038664          226 ALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFIS  305 (464)
Q Consensus       226 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~  305 (464)
                      ..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+++++  ++++|.
T Consensus       161 ~~g~~~~v~~Ll~~gadvn-~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~~~--i~~lL~  236 (269)
T 4b93_B          161 SGGHHELVALLLQHGASIN-ASNNKGNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCAEQNSK--IMELLQ  236 (269)
T ss_dssp             HTTCGGGHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGSCTTCH--HHHHTT
T ss_pred             HCCCHHHHHHHHHCCCCCC-ccccCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHhCCc--HHHHHH
Confidence            8888888888888888877 5788888888888888888888888888887 48888888888888887664  444443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=5.1e-38  Score=286.81  Aligned_cols=264  Identities=21%  Similarity=0.242  Sum_probs=182.5

Q ss_pred             HHHHcCCHHHHHHHHhhcCCCcc---------cccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHH
Q 038664           10 RALRRGDAATVRESARLNGNGIL---------DMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAA   80 (464)
Q Consensus        10 ~A~~~g~~~~~~~ll~~~~~~~~---------~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~   80 (464)
                      .+++.+..+.++.++.... ++.         ..+..|.||||.||..|+.++|++|++.|++ ++..+..|.||||+|+
T Consensus         4 ~~a~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   81 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSET-DLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQAC   81 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTT-SSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcccc-ccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHH
Confidence            4677778888888887554 211         2234567888888888888888888888887 6777888888888888


Q ss_pred             HhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcC
Q 038664           81 RAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAG  160 (464)
Q Consensus        81 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g  160 (464)
                      ..|+.+++++|++++++.          +..+..|.||||+|+..|+.+++++|++.+++ ++..+..|.|||++|+..+
T Consensus        82 ~~g~~~~v~~Ll~~ga~~----------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~  150 (299)
T 1s70_B           82 IDDNVDMVKFLVENGANI----------NQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEA  150 (299)
T ss_dssp             HTTCHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHH
T ss_pred             HcCCHHHHHHHHHCCCCC----------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcc
Confidence            888888888888877763          35667777777777777777777777777666 3445556666666666555


Q ss_pred             CHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcC
Q 038664          161 LTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDED  240 (464)
Q Consensus       161 ~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~  240 (464)
                      +.+++++++....                                  ..++..+..+.++++                  
T Consensus       151 ~~~~~~~ll~~~~----------------------------------~~~~~~~~~~~~~~~------------------  178 (299)
T 1s70_B          151 MEELLQNEVNRQG----------------------------------VDIEAARKEEERIML------------------  178 (299)
T ss_dssp             HHHHHHHHHHHHT----------------------------------CCHHHHHHHHHHHHH------------------
T ss_pred             hHHHHHHHHhhcC----------------------------------CCchhhhhhhhhHHH------------------
Confidence            5555555544322                                  111111111111111                  


Q ss_pred             CCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCC
Q 038664          241 DTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLE  320 (464)
Q Consensus       241 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~  320 (464)
                                              ..++.++..+.......+..|.||||+|+..|+.+++++|++.   +++++.+|..
T Consensus       179 ------------------------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~d~~~~d~~  231 (299)
T 1s70_B          179 ------------------------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA---RYDVNIKDYD  231 (299)
T ss_dssp             ------------------------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT---TCCTTCCCTT
T ss_pred             ------------------------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc---CCCCCCcCCC
Confidence                                    1223344444443445566788888888888888888888876   6778888888


Q ss_pred             CCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCc
Q 038664          321 GNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSL  366 (464)
Q Consensus       321 g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~  366 (464)
                      |+||||+|+..|+.+++++|+++ |+|++.+|..|+||+++|.+..
T Consensus       232 g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~~  276 (299)
T 1s70_B          232 GWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVGQTAFDVADEDI  276 (299)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTTTSCCSGG
T ss_pred             CCcHHHHHHhcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHHH
Confidence            88888888888888888888876 8888888888888888887543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.6e-36  Score=267.59  Aligned_cols=230  Identities=21%  Similarity=0.275  Sum_probs=139.9

Q ss_pred             ccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhc
Q 038664           32 LDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQ  111 (464)
Q Consensus        32 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  111 (464)
                      +..+..|.|+||.|+..|+.+++++|++.|.+ ++..+..|.||||+|+..|+.+++++|++.+.+..         ...
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~---------~~~   72 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD---------QLG   72 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------CCB
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch---------hhc
Confidence            34566777888888888888888888888877 66677778888888888888888888887776543         123


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHH
Q 038664          112 DEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAI  191 (464)
Q Consensus       112 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~  191 (464)
                      +..|.||||+|+..|+.+++++|++.+++ ....+..|.|||+.|+..|+.+++++|++++.++ +..+..|.||||+|+
T Consensus        73 ~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~  150 (240)
T 3eu9_A           73 GDLNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAA  150 (240)
T ss_dssp             TTTTBCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCcCCChhHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHH
Confidence            44467777777777777777777777666 3445566666666666666666666666655554 445555555555555


Q ss_pred             HcCC-HHHHHHHHHhCchhhhhhcC-CCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHH
Q 038664          192 IKSN-FVVMAKILEAKRDLINVLDK-RDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKR  269 (464)
Q Consensus       192 ~~~~-~~~~~~ll~~~~~~~~~~~~-~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  269 (464)
                      ..++ .++++.|++.+.+ ++..+. .|.||||+|+..|+.+++++|+++|+++. .++..|.|||++|++.|+.+++++
T Consensus       151 ~~~~~~~~~~~L~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~v~~  228 (240)
T 3eu9_A          151 YRTHSVDPTRLLLTFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD-AQNIKGESALDLAKQRKNVWMINH  228 (240)
T ss_dssp             HHCCSSTTHHHHHHTTCC-TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             HhCChHHHHHHHHhcCCC-cchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHH
Confidence            3333 4444444444444 333333 44455555555555555555555544443 344444455555555555555555


Q ss_pred             HHHHCC
Q 038664          270 LLHSYP  275 (464)
Q Consensus       270 Ll~~~~  275 (464)
                      |++.+.
T Consensus       229 L~~~~~  234 (240)
T 3eu9_A          229 LQEARQ  234 (240)
T ss_dssp             HHHHC-
T ss_pred             HHHhhh
Confidence            544443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-37  Score=283.67  Aligned_cols=220  Identities=21%  Similarity=0.228  Sum_probs=155.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcC
Q 038664          149 GQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALG  228 (464)
Q Consensus       149 g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~  228 (464)
                      +.|||+.|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|
T Consensus        40 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~g  117 (299)
T 1s70_B           40 DGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCG  117 (299)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcC
Confidence            344444444444444444444444443 44445555555555555566666666665555 5666777888888888888


Q ss_pred             CHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCc
Q 038664          229 HFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLP  308 (464)
Q Consensus       229 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~  308 (464)
                      +.+++++|+++|+++. ..+..|.||||+|+..++.++++.++......++..+..+.++++..+       ..++... 
T Consensus       118 ~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~-  188 (299)
T 1s70_B          118 YLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDA-------RQWLNSG-  188 (299)
T ss_dssp             CHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH-------HHHHHHT-
T ss_pred             CHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHH-------HHHHhcc-
Confidence            8888888888888776 578889999999999999999998887765555655555555554332       2233222 


Q ss_pred             chhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCchhhH--HHhhcCCCCCCC
Q 038664          309 EIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQND--ILEGHGGSASGT  382 (464)
Q Consensus       309 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~--~l~~~g~~~~~~  382 (464)
                        .......+..|.||||+|+..|+.+++++|++. |++++.+|..|.|||++|...++.+.  +|..+|+++...
T Consensus       189 --~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~  261 (299)
T 1s70_B          189 --HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV  261 (299)
T ss_dssp             --CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             --CcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCc
Confidence              222345678899999999999999999999975 99999999999999999998888765  477889887543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.5e-36  Score=265.40  Aligned_cols=228  Identities=17%  Similarity=0.182  Sum_probs=161.2

Q ss_pred             ccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccc
Q 038664           67 VENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYIN  146 (464)
Q Consensus        67 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  146 (464)
                      ..|..|.|||+.|+..|+.+++++|++.+.+.          +..+..|.||||+|+..|+.+++++|++.++......+
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~   73 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDV----------RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGG   73 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBT
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCc----------CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcC
Confidence            45677888888888888888888888887763          36677888888888888888888888888887665666


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHH
Q 038664          147 KAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAA  226 (464)
Q Consensus       147 ~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~  226 (464)
                      ..|.|||++|+..|+.+++++|++.+.++ +..+..|.+|||.|+..++.+++++|++.+.+ ++..+..|.||||+|+.
T Consensus        74 ~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~  151 (240)
T 3eu9_A           74 DLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAY  151 (240)
T ss_dssp             TTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             CcCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHH
Confidence            66788888888888888888888877766 66667777777777777777777777777665 56667777777777775


Q ss_pred             cCC-HHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHh
Q 038664          227 LGH-FEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFIS  305 (464)
Q Consensus       227 ~~~-~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~  305 (464)
                      .++ .+++++|++.+.+........|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|++.|+.+++++|+
T Consensus       152 ~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~v~~L~  230 (240)
T 3eu9_A          152 RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGESALDLAKQRKNVWMINHLQ  230 (240)
T ss_dssp             HCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             hCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            554 56666666666665532223566666666666666666666666555 3555556666666666666666666655


Q ss_pred             cC
Q 038664          306 KL  307 (464)
Q Consensus       306 ~~  307 (464)
                      +.
T Consensus       231 ~~  232 (240)
T 3eu9_A          231 EA  232 (240)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.2e-36  Score=265.31  Aligned_cols=214  Identities=22%  Similarity=0.329  Sum_probs=116.1

Q ss_pred             CCHHHHHHHHhhcCCCcc-cccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhc
Q 038664           15 GDAATVRESARLNGNGIL-DMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMR   93 (464)
Q Consensus        15 g~~~~~~~ll~~~~~~~~-~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~   93 (464)
                      |+.+.++.+++.+. +++ ..+..|.||||+|+..|+.+++++|++++++ ++..+..|.||||+|+..|+.+++++|++
T Consensus         2 g~~~~i~~Ll~~g~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   79 (223)
T 2f8y_A            2 DAPAVISDFIYQGA-SLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR   79 (223)
T ss_dssp             ---CCEETTEETTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCC-CcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            34444544444333 443 3355566666666666666666666666555 45555666666666666666666666665


Q ss_pred             ccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcC
Q 038664           94 PHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKL  173 (464)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~  173 (464)
                      .++..         ++..+..|.||||+|+..++.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++++.
T Consensus        80 ~~~~~---------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  149 (223)
T 2f8y_A           80 NRATD---------LDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA  149 (223)
T ss_dssp             BTTSC---------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cCCCC---------cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            55421         234455566666666666666666666665555 33445555555555555555555555555555


Q ss_pred             cCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCC
Q 038664          174 SVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDT  242 (464)
Q Consensus       174 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~  242 (464)
                      ++ +..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||+++|++.++.+++++|+++|..
T Consensus       150 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          150 NK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             CT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             CC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            44 44455555555555555555555555555544 444555555555555555555555555555443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.5e-36  Score=274.23  Aligned_cols=237  Identities=16%  Similarity=0.127  Sum_probs=207.7

Q ss_pred             HhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHH
Q 038664          108 LRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLL  187 (464)
Q Consensus       108 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l  187 (464)
                      ++.+|..|.||||+|+..|+.+++++|++.++++. ..  +|.||||+|+..|+.+++++|++++.++ +..+..|.|||
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L   99 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN-LL--ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTAL   99 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGS-CC--TTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHH
Confidence            34789999999999999999999999999998853 33  5899999999999999999999999987 88899999999


Q ss_pred             HHHHHcCCHHHHHHHHHhCchhhhhhcCCC-CcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHH
Q 038664          188 HIAIIKSNFVVMAKILEAKRDLINVLDKRD-RNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSL  266 (464)
Q Consensus       188 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g-~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  266 (464)
                      |+|+..|+.+++++|++.+.+ ++..+..| .||||+|+..|+.+++++|++++++...  ...|.||||+|+..|+.++
T Consensus       100 ~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~  176 (285)
T 3kea_A          100 YYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDM  176 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHHHHHHcChHHH
Confidence            999999999999999999888 88899999 7999999999999999999999987642  2378999999999999999


Q ss_pred             HHHHHHHCCCcccccccCCCch-hHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccc
Q 038664          267 LKRLLHSYPDSIEFLDKKNRNI-LHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMR  345 (464)
Q Consensus       267 v~~Ll~~~~~~~~~~d~~g~t~-L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~  345 (464)
                      +++|+++|++ ++.+|..|+|| ||+|+..++.+++++|++.   |++++.+|       +.|+..|+.+++++|+++ |
T Consensus       177 v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~---gad~~~~~-------~~a~~~~~~~iv~~Ll~~-g  244 (285)
T 3kea_A          177 MILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKY---DINIYSAN-------LENVLLDDAEIAKMIIEK-H  244 (285)
T ss_dssp             HHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS---CBCSTTTT-------GGGGTTTCHHHHHHHHHH-H
T ss_pred             HHHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHc---CCCCCCCC-------hhhhhcCCHHHHHHHHHc-C
Confidence            9999999888 59999999998 9999999999999999988   67788777       366789999999999976 8


Q ss_pred             cccccccccCCChHHhhccC
Q 038664          346 VNIRATNEKKQTALAIVQPS  365 (464)
Q Consensus       346 ~d~~~~n~~g~t~l~~a~~~  365 (464)
                      ++++....  ...++++...
T Consensus       245 ~~~~~~~~--~~~~~~~~~~  262 (285)
T 3kea_A          245 VEYKSDSY--TKDLDIVKNN  262 (285)
T ss_dssp             HHHTTCTT--TTTCHHHHTC
T ss_pred             CCCCCccc--cchHHHHhhh
Confidence            88775543  3445555533

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.7e-36  Score=264.24  Aligned_cols=215  Identities=18%  Similarity=0.176  Sum_probs=187.5

Q ss_pred             CCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 038664          126 CDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEA  205 (464)
Q Consensus       126 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  205 (464)
                      |+.+++++|++.++++....+..|.||||+|+..|+.+++++|++++.++ +..+..|.||||+|+..++.+++++|++.
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   80 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRN   80 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            56778888888888877677888999999999999999999999988876 77888899999999999999999999998


Q ss_pred             CchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCC
Q 038664          206 KRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKN  285 (464)
Q Consensus       206 ~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g  285 (464)
                      ++..++..+..|.||||+|+..++.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|++++++ ++.+|..|
T Consensus        81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g  158 (223)
T 2f8y_A           81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNRE  158 (223)
T ss_dssp             TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTC
T ss_pred             CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc-CcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCC
Confidence            876678888899999999999999999999999988877 5788899999999999999999999999887 48888999


Q ss_pred             CchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccc
Q 038664          286 RNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVN  347 (464)
Q Consensus       286 ~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d  347 (464)
                      +||||+|+..++.+++++|++.   +++++.+|..|.||||+|++.++.+++++|++. |+.
T Consensus       159 ~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~-g~~  216 (223)
T 2f8y_A          159 ETPLFLAAREGSYETAKVLLDH---FANRDITDHMDRLPRDIAQERMHHDIVRLLDEY-NLV  216 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCS
T ss_pred             cCHHHHHHHcCCHHHHHHHHHc---CCCCccccccCCCHHHHHHHhcchHHHHHHHHc-CCC
Confidence            9999999999999999999887   677888899999999999999999999999975 664

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=5.4e-38  Score=289.27  Aligned_cols=253  Identities=13%  Similarity=0.014  Sum_probs=164.6

Q ss_pred             CCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccc----------------cc
Q 038664           83 GNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICY----------------IN  146 (464)
Q Consensus        83 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~----------------~~  146 (464)
                      ...+++++|+++|++          ++..+..|.|+++     |+.++++.|+++|.+....                ..
T Consensus        30 ~~~dlv~~ll~~ga~----------i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~   94 (327)
T 1sw6_A           30 FTHDLTSDFLSSPLK----------IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGG   94 (327)
T ss_dssp             CCTTCCCSTTTSSCC----------CEECBCCCCCCCH-----HHHHHHHHHHHHHHC----------------------
T ss_pred             hcCchHHHHhhCCcc----------cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhccccccccccc
Confidence            334555666665555          2345555666655     5566666666655332110                00


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCC-CCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHH
Q 038664          147 KAGQSPLSLAIDAGLTHIACCIIKEKLSVLDH-RGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAA  225 (464)
Q Consensus       147 ~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~  225 (464)
                      ....+..+.++..+..++++.|++.+.++ +. .+..|.||||+|+..|+.+++++|++++++ ++..|.+|+||||+|+
T Consensus        95 ~~~~~~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~  172 (327)
T 1sw6_A           95 SSNQQQQHVSFDSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAV  172 (327)
T ss_dssp             ---------CHHHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHH
T ss_pred             CCccchhHHHHHhhHHHHHHHHHhcCCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHH
Confidence            11112235566666666777777766666 55 677777777777777777777777777766 6677777777777777


Q ss_pred             HcCC---HHHHHHHhhcCCCccccccCCCCCccccccc----CCcHHHHHHHHHH--------------------CCCcc
Q 038664          226 ALGH---FEIACRLSDEDDTLAYERDCNGQSPLHLASE----NGKLSLLKRLLHS--------------------YPDSI  278 (464)
Q Consensus       226 ~~~~---~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~----~g~~~~v~~Ll~~--------------------~~~~~  278 (464)
                      ..|+   .++++.|++.+......++..|+||||+|+.    .|+.+++++|++.                    +.+ +
T Consensus       173 ~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~-~  251 (327)
T 1sw6_A          173 KSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK-P  251 (327)
T ss_dssp             HSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------
T ss_pred             HhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC-c
Confidence            7776   5666666666533233567777777777776    6777777777766                    555 5


Q ss_pred             cccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCCh
Q 038664          279 EFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTA  358 (464)
Q Consensus       279 ~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~  358 (464)
                      +..+..|+||||+|+.      +++|++.     ++|.+|..|+||||+|++.|+.+++++|+++ |+|++.+|..|+||
T Consensus       252 ~~~~~~g~t~L~~a~~------~~~Ll~~-----~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~Tp  319 (327)
T 1sw6_A          252 NDKNGERKDSILENLD------LKWIIAN-----MLNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRP  319 (327)
T ss_dssp             --------CHHHHHCS------HHHHHHH-----TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCG
T ss_pred             ccccccCCChhHHHHH------HHHHHHh-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCH
Confidence            8899999999999996      7888765     4899999999999999999999999999976 99999999999999


Q ss_pred             HHhhccC
Q 038664          359 LAIVQPS  365 (464)
Q Consensus       359 l~~a~~~  365 (464)
                      |++|.+.
T Consensus       320 L~~A~~~  326 (327)
T 1sw6_A          320 VDFGAGL  326 (327)
T ss_dssp             GGGTCC-
T ss_pred             HHHHHhc
Confidence            9999864

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=8.5e-38  Score=287.98  Aligned_cols=272  Identities=11%  Similarity=0.043  Sum_probs=209.8

Q ss_pred             CCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHh-------
Q 038664           37 NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILR-------  109 (464)
Q Consensus        37 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~-------  109 (464)
                      ...+|+|    ....++|++|+++|++ ++..+..|.|+++     |+.+++++|+++|.++...........       
T Consensus        22 ~~~~~~~----~~~~dlv~~ll~~ga~-i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~   91 (327)
T 1sw6_A           22 RTAGPII----TFTHDLTSDFLSSPLK-IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNS   91 (327)
T ss_dssp             ---CCEE----ECCTTCCCSTTTSSCC-CEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------
T ss_pred             ccccchh----hhcCchHHHHhhCCcc-cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccc
Confidence            4456666    4566789999999998 7778899999987     899999999999877542111000000       


Q ss_pred             hcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHH
Q 038664          110 KQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHI  189 (464)
Q Consensus       110 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~  189 (464)
                      .......+.+|.|+..+..+++++|++.+.++....+..|.||||+|+..|+.+++++|++++.++ +..+..|.||||+
T Consensus        92 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~  170 (327)
T 1sw6_A           92 EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVK  170 (327)
T ss_dssp             ------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHH
T ss_pred             cccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHH
Confidence            011122334588888888899999999998854338999999999999999999999999999988 8999999999999


Q ss_pred             HHHcCC---HHHHHHHHHhCchhhhhhcCCCCcHHHHHHH----cCCHHHHHHHhhc--------------------CCC
Q 038664          190 AIIKSN---FVVMAKILEAKRDLINVLDKRDRNPLHYAAA----LGHFEIACRLSDE--------------------DDT  242 (464)
Q Consensus       190 a~~~~~---~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~----~~~~~~v~~Ll~~--------------------~~~  242 (464)
                      |+..|+   .++++.|++.+...++..|..|+||||+|++    .|+.+++++|++.                    +++
T Consensus       171 A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~  250 (327)
T 1sw6_A          171 AVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK  250 (327)
T ss_dssp             HHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------
T ss_pred             HHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC
Confidence            999998   6888888888755689999999999999999    8999999999987                    566


Q ss_pred             ccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCC
Q 038664          243 LAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGN  322 (464)
Q Consensus       243 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~  322 (464)
                      ++ .++..|.||||.|+.      +++|+++  + ++.+|..|+||||+|+++|+.+++++|++.   |++++.+|..|+
T Consensus       251 ~~-~~~~~g~t~L~~a~~------~~~Ll~~--~-~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~---Gad~~~~d~~G~  317 (327)
T 1sw6_A          251 PN-DKNGERKDSILENLD------LKWIIAN--M-LNAQDSNGDTCLNIAARLGNISIVDALLDY---GADPFIANKSGL  317 (327)
T ss_dssp             ----------CHHHHHCS------HHHHHHH--T-TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT---TCCTTCCCTTSC
T ss_pred             cc-cccccCCChhHHHHH------HHHHHHh--C-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCC
Confidence            66 678899999999996      8999998  3 688999999999999999999999999988   789999999999


Q ss_pred             cHHHHHHHcC
Q 038664          323 TPLHLAAINN  332 (464)
Q Consensus       323 t~Lh~A~~~~  332 (464)
                      ||||+|+++|
T Consensus       318 TpL~~A~~~g  327 (327)
T 1sw6_A          318 RPVDFGAGLE  327 (327)
T ss_dssp             CGGGGTCC--
T ss_pred             CHHHHHHhcC
Confidence            9999998764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=3.2e-35  Score=258.48  Aligned_cols=221  Identities=19%  Similarity=0.260  Sum_probs=150.0

Q ss_pred             cccCCCCchhHHHHhcCCHHHHHHHHHhCCc---cccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHh
Q 038664           33 DMSQNRDTALHIAARFGHKNVVMEILELRPD---LVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILR  109 (464)
Q Consensus        33 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  109 (464)
                      .+|.+|+||||+|+..|+.+++++|++.++.   .++..+..|.||||+|+..|+.+++++|++++++.+          
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------   72 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE----------   72 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC----------
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------
Confidence            4677888999999999999988888887663   367788888999999999999999999998887744          


Q ss_pred             hcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHH
Q 038664          110 KQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHI  189 (464)
Q Consensus       110 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~  189 (464)
                      .++..|.||||+|+..|+.+++++|++.++....                             ....+..+..|.||||+
T Consensus        73 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-----------------------------~~~~~~~~~~g~t~L~~  123 (236)
T 1ikn_D           73 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL-----------------------------HSILKATNYNGHTCLHL  123 (236)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSS-----------------------------SCGGGCCCTTCCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhH-----------------------------HHHhhccCCCCCCHHHH
Confidence            6777888888888888888888888887754200                             00113344455556666


Q ss_pred             HHHcCCHHHHHHHHHhCchhhhhhcC-CCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHH
Q 038664          190 AIIKSNFVVMAKILEAKRDLINVLDK-RDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLK  268 (464)
Q Consensus       190 a~~~~~~~~~~~ll~~~~~~~~~~~~-~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  268 (464)
                      |+..++.+++++|++.+.+ ++..+. .|.||||+|+..|+.+++++|+++|+++. .++..|.||||+|+..|+.++++
T Consensus       124 A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~~~~~~  201 (236)
T 1ikn_D          124 ASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN-RVTYQGYSPYQLTWGRPSTRIQQ  201 (236)
T ss_dssp             HHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC-CCCTTCCCGGGGCTTSSCHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccCCCCCHHHHHHccCchHHHH
Confidence            6666666666666666555 455554 67777777777777777777777776665 46667777777777777777777


Q ss_pred             HHHHHCCCcc-cccccCCCchhHHHHh
Q 038664          269 RLLHSYPDSI-EFLDKKNRNILHLAAQ  294 (464)
Q Consensus       269 ~Ll~~~~~~~-~~~d~~g~t~L~~A~~  294 (464)
                      +|+++|++.. ...+..|.|+.+.+..
T Consensus       202 ~Ll~~ga~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          202 QLGQLTLENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             HHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred             HHHHcchhhhhcCCccchHHHHhhhcc
Confidence            7777776542 2456666666655443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=8.8e-35  Score=255.65  Aligned_cols=227  Identities=16%  Similarity=0.167  Sum_probs=171.7

Q ss_pred             ccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccc
Q 038664           67 VENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYIN  146 (464)
Q Consensus        67 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  146 (464)
                      ..|.+|.||||+|+..|+.+++++|++.+....      ..++..+..|.||||+|+..|+.+++++|++.+++ ++..+
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~   75 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL------AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRD   75 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----C------CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCC
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccH------HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcC
Confidence            467788888888888888888888887765320      01345677778888888888888888877777766 34566


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHH
Q 038664          147 KAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAA  226 (464)
Q Consensus       147 ~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~  226 (464)
                      ..|.||||+|+..|+.+++++|++.+... ..                            ...++..+..|.||||+|+.
T Consensus        76 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~----------------------------~~~~~~~~~~g~t~L~~A~~  126 (236)
T 1ikn_D           76 FRGNTPLHLACEQGCLASVGVLTQSCTTP-HL----------------------------HSILKATNYNGHTCLHLASI  126 (236)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHSTTTT-SS----------------------------SCGGGCCCTTCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcccch-hH----------------------------HHHhhccCCCCCCHHHHHHH
Confidence            66777777777777777777776655432 10                            12256778899999999999


Q ss_pred             cCCHHHHHHHhhcCCCccccccC-CCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHh
Q 038664          227 LGHFEIACRLSDEDDTLAYERDC-NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFIS  305 (464)
Q Consensus       227 ~~~~~~v~~Ll~~~~~~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~  305 (464)
                      .|+.+++++|+++|++++ ..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+++.+++++|+
T Consensus       127 ~~~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll  204 (236)
T 1ikn_D          127 HGYLGIVELLVSLGADVN-AQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLG  204 (236)
T ss_dssp             TTCHHHHHHHHHHTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHH
Confidence            999999999999999988 4565 999999999999999999999999988 5999999999999999999999999999


Q ss_pred             cCcchhhhhhccCCCCCcHHHHHHHcC
Q 038664          306 KLPEIEDMINSSDLEGNTPLHLAAINN  332 (464)
Q Consensus       306 ~~~~~~~~~~~~d~~g~t~Lh~A~~~~  332 (464)
                      +.+.. .....++..|.||.+.+....
T Consensus       205 ~~ga~-~~~~~~~~~~~~~~~~~~~~~  230 (236)
T 1ikn_D          205 QLTLE-NLQMLPESEDEESYDTESEFT  230 (236)
T ss_dssp             TTSCG-GGSSCCCCCTTTCCCCC----
T ss_pred             Hcchh-hhhcCCccchHHHHhhhcccc
Confidence            98431 123478888999987765543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=6.2e-33  Score=237.59  Aligned_cols=194  Identities=19%  Similarity=0.190  Sum_probs=146.3

Q ss_pred             CCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCC
Q 038664           36 QNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEG  115 (464)
Q Consensus        36 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g  115 (464)
                      ..+.||||.|+..|+.+.++.|++.++..++..+..|.||||+|+..|+.+++++|++++++.          +.++..|
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~g   72 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI----------NLQNSIS   72 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT----------TCCCTTS
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------CCCCCCC
Confidence            456788888888888888888888777447777778888888888888888888888877763          3567778


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCC
Q 038664          116 NTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSN  195 (464)
Q Consensus       116 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~  195 (464)
                      .||||+|+..|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|++.+....+..+..|.||||+|+..++
T Consensus        73 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~  152 (201)
T 3hra_A           73 DSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE  152 (201)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhcc
Confidence            88888888888888888888665544566777777888888877777777777777733336777777777777777776


Q ss_pred             -----HHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcC
Q 038664          196 -----FVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDED  240 (464)
Q Consensus       196 -----~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~  240 (464)
                           .+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|
T Consensus       153 ~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          153 GNQLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CSHHHHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             chhhHHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence                 7777777777766 6777777777777777777777777777654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=2.2e-33  Score=246.13  Aligned_cols=211  Identities=18%  Similarity=0.167  Sum_probs=147.1

Q ss_pred             CCCchhHHHHhcCCHHHHHHHHHh-CCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCC
Q 038664           37 NRDTALHIAARFGHKNVVMEILEL-RPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEG  115 (464)
Q Consensus        37 ~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g  115 (464)
                      .|+||||+|+..|+.+++++|++. +.+ ++.+|..|.||||+|+..|+.+++++|++.+++....     ..+..+..|
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~~~~~g   75 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCE-VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE-----PMTSELYEG   75 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC-----CCCSTTTTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCC-cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccc-----cccccCCCC
Confidence            478889999988888888888887 655 7778888888999888888888888888887663200     013456778


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCC
Q 038664          116 NTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSN  195 (464)
Q Consensus       116 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~  195 (464)
                      .||||+|+..|+.+++++|++.++++. ..+..  +.+.                   ...+..+..|.||||+|+..++
T Consensus        76 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~--~~~~-------------------~~~~~~~~~g~t~L~~A~~~~~  133 (232)
T 2rfa_A           76 QTALHIAVINQNVNLVRALLARGASVS-ARATG--SVFH-------------------YRPHNLIYYGEHPLSFAACVGS  133 (232)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCS--GGGS-------------------CCTTCSCCCCSSHHHHHHHHTC
T ss_pred             cCHHHHHHHcCCHHHHHHHHhCCCCCC-cccCC--ccee-------------------ecccccccCCCCHHHHHHHcCC
Confidence            888888888888888888888887743 22221  1100                   0013344566667777777777


Q ss_pred             HHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHH----HHHhhcCCCcc-----ccccCCCCCcccccccCCcHHH
Q 038664          196 FVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIA----CRLSDEDDTLA-----YERDCNGQSPLHLASENGKLSL  266 (464)
Q Consensus       196 ~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v----~~Ll~~~~~~~-----~~~~~~g~tpL~~A~~~g~~~~  266 (464)
                      .+++++|++.+.+ ++..|..|.||||+|+..++.+++    ++|++.+++..     ..++..|+||||+|++.|+.++
T Consensus       134 ~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~  212 (232)
T 2rfa_A          134 EEIVRLLIEHGAD-IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVM  212 (232)
T ss_dssp             HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHH
Confidence            7777777766665 566677777777777777776666    67777766553     3466677777777777777777


Q ss_pred             HHHHHHHCCC
Q 038664          267 LKRLLHSYPD  276 (464)
Q Consensus       267 v~~Ll~~~~~  276 (464)
                      +++|+++++.
T Consensus       213 v~~Ll~~g~~  222 (232)
T 2rfa_A          213 FQHLMQKRKH  222 (232)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHhcCcc
Confidence            7777776654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.1e-32  Score=236.06  Aligned_cols=193  Identities=21%  Similarity=0.213  Sum_probs=143.7

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHH
Q 038664          147 KAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAA  226 (464)
Q Consensus       147 ~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~  226 (464)
                      ..+.|||+.|+..|+.+.++.++..+....+..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGA   81 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence            34566666666666666666666666533466666677777777777777777777777665 66677777777777777


Q ss_pred             cCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCc-----hHHH
Q 038664          227 LGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGH-----ANVV  301 (464)
Q Consensus       227 ~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~-----~~~~  301 (464)
                      .|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++.++..++.+|..|+||||+|+..++     .+++
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v  161 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV  161 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence            77788887777554433335777788888888888888888888888854468888888888888888877     7888


Q ss_pred             HHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhc
Q 038664          302 VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARN  343 (464)
Q Consensus       302 ~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  343 (464)
                      ++|++.   +++++.+|..|+||||+|++.|+.+++++|++.
T Consensus       162 ~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          162 KLLMEN---GADQSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             HHHHHC---CCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            888877   677888888888888888888888888888854

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.9e-32  Score=223.79  Aligned_cols=160  Identities=26%  Similarity=0.398  Sum_probs=142.7

Q ss_pred             cccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHh
Q 038664            3 TVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARA   82 (464)
Q Consensus         3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~   82 (464)
                      .+.++|+.||+.|+.+.|+.||+. |.+++.++..|+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..
T Consensus         3 dlg~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~~~   80 (169)
T 4gpm_A            3 ELGKRLIEAAENGNKDRVKDLIEN-GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAEN   80 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHHHc
Confidence            456789999999999999988875 459999999999999999999999999999999998 788999999999999999


Q ss_pred             CCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCH
Q 038664           83 GNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLT  162 (464)
Q Consensus        83 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~  162 (464)
                      |+.+++++|+++|++.          +.+|..|+||||+|+..|+.+++++|++.+++ ++.+|..|.|||++|+..|+.
T Consensus        81 g~~~~v~~Ll~~gadv----------n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~~  149 (169)
T 4gpm_A           81 GHKEVVKLLISKGADV----------NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNE  149 (169)
T ss_dssp             TCHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHCcCCC----------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCH
Confidence            9999999999999884          47889999999999999999999999999988 567889999999999999999


Q ss_pred             HHHHHHHHhcCcC
Q 038664          163 HIACCIIKEKLSV  175 (464)
Q Consensus       163 ~~~~~Ll~~~~~~  175 (464)
                      +++++|+++|+++
T Consensus       150 ~iv~~Ll~~GA~i  162 (169)
T 4gpm_A          150 EVVKLLEKQGGWL  162 (169)
T ss_dssp             HHHHHHHTC----
T ss_pred             HHHHHHHHCCCCc
Confidence            9999999999876

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1e-32  Score=248.06  Aligned_cols=206  Identities=15%  Similarity=0.207  Sum_probs=137.8

Q ss_pred             CcccccCCCCchhHHHHhcCCHHHHHHHHHh----CCcccc---ccccCCCCHHHHHHHh---CCHHHHHHHhcccCCCC
Q 038664           30 GILDMSQNRDTALHIAARFGHKNVVMEILEL----RPDLVS---VENHKSETPMHVAARA---GNFGVAKIFMRPHGNGN   99 (464)
Q Consensus        30 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~----~~~~~~---~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~   99 (464)
                      ..+..+..|+||||+||..|+.++|+.|++.    +.++..   ..+..|.||||+|+..   |+.+++++|++.+++..
T Consensus         5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~   84 (273)
T 2pnn_A            5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD   84 (273)
T ss_dssp             ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTT
T ss_pred             cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcccc
Confidence            3446788999999999999999999998874    444211   4588999999999987   99999999999987543


Q ss_pred             CCcchHHHHhh----cCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccc--------------CCCcHHHHHHHcCC
Q 038664          100 NTGTFDDILRK----QDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINK--------------AGQSPLSLAIDAGL  161 (464)
Q Consensus       100 ~~~~~~~~~~~----~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~--------------~g~t~l~~A~~~g~  161 (464)
                      .   ....++.    .|..|.||||+|+..|+.+++++|++.++++ +..+.              .|.||||+|+..|+
T Consensus        85 ~---~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~  160 (273)
T 2pnn_A           85 S---LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ  160 (273)
T ss_dssp             C---HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTC
T ss_pred             c---hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCC
Confidence            1   1112232    5678999999999999999999999998884 44444              46666666666666


Q ss_pred             HHHHHHHHH---hcCcCcCCCCCCCCCHHHHHHHcCC---------HHHHHHHHHhCchhhh-------hhcCCCCcHHH
Q 038664          162 THIACCIIK---EKLSVLDHRGPNDLTLLHIAIIKSN---------FVVMAKILEAKRDLIN-------VLDKRDRNPLH  222 (464)
Q Consensus       162 ~~~~~~Ll~---~~~~~~~~~~~~~~~~l~~a~~~~~---------~~~~~~ll~~~~~~~~-------~~~~~g~t~L~  222 (464)
                      .+++++|++   .+.++ +..+..|.||||+|+..++         .+++++|++.+.+ ++       ..|..|+||||
T Consensus       161 ~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~-~n~~~~~~~~~d~~g~TpL~  238 (273)
T 2pnn_A          161 LAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK-LHPTLKLEEITNRKGLTPLA  238 (273)
T ss_dssp             HHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHH
T ss_pred             HHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh-cccccccccccCCCCCCHHH
Confidence            666666666   55554 5555556666666665555         4555555555544 32       34555555555


Q ss_pred             HHHHcCCHHHHHHHhhcCC
Q 038664          223 YAAALGHFEIACRLSDEDD  241 (464)
Q Consensus       223 ~a~~~~~~~~v~~Ll~~~~  241 (464)
                      +|+..|+.+++++|+++|+
T Consensus       239 ~A~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          239 LAASSGKIGVLAYILQREI  257 (273)
T ss_dssp             HHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHhChHHHHHHHHHCCC
Confidence            5555555555555555555

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.9e-32  Score=225.63  Aligned_cols=159  Identities=32%  Similarity=0.439  Sum_probs=137.8

Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcH
Q 038664          185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKL  264 (464)
Q Consensus       185 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  264 (464)
                      +.|+.|++.|+.++++.|++.+.+ ++.+|.+|+||||+|+..++.+++++|++.|++++ .++..|+||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhccCCCCHHHHHHHcCCH
Confidence            368888888999999999988887 78889999999999999999999999999998887 6888899999999999999


Q ss_pred             HHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhcc
Q 038664          265 SLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNM  344 (464)
Q Consensus       265 ~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~  344 (464)
                      +++++|+++|++ ++.+|.+|+||||+|++.|+.+++++|++.   +++++.+|.+|+||||+|++.|+.+++++|+++ 
T Consensus        84 ~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~---gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-  158 (169)
T 4gpm_A           84 EVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISK---GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ-  158 (169)
T ss_dssp             HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHC-
Confidence            999999999888 589999999999999999999999999987   788899999999999999999999999999976 


Q ss_pred             cccccc
Q 038664          345 RVNIRA  350 (464)
Q Consensus       345 ~~d~~~  350 (464)
                      |++++.
T Consensus       159 GA~ie~  164 (169)
T 4gpm_A          159 GGWLEH  164 (169)
T ss_dssp             ------
T ss_pred             CCCcCC
Confidence            988764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=3.1e-32  Score=242.49  Aligned_cols=202  Identities=15%  Similarity=0.157  Sum_probs=140.7

Q ss_pred             CCCchhHHHHhcCCHH----HHHHHHHhCCccccc----cccCCCCHHHHHHHh---CCHHHHHHHhcccCCCCCCcchH
Q 038664           37 NRDTALHIAARFGHKN----VVMEILELRPDLVSV----ENHKSETPMHVAARA---GNFGVAKIFMRPHGNGNNTGTFD  105 (464)
Q Consensus        37 ~g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~----~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~  105 (464)
                      .|+||||+||..|+.+    ++++|++.+.+ ++.    .+..|.||||+|+..   |+.+++++|++.+++........
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            4789999999999997    66777778988 565    899999999999999   99999999999987654221110


Q ss_pred             -HHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccC-------------CCcHHHHHHHcCCHHHHHHHHH-
Q 038664          106 -DILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKA-------------GQSPLSLAIDAGLTHIACCIIK-  170 (464)
Q Consensus       106 -~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-------------g~t~l~~A~~~g~~~~~~~Ll~-  170 (464)
                       ......|..|.||||+|+..|+.+++++|++.++++ +..+..             |.||||+|+..|+.+++++|++ 
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  158 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN  158 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence             001124567999999999999999999999998884 444544             6666666666666666666666 


Q ss_pred             --hcCcCcCCCCCCCCCHHHHHHH--cCCHH-------HHHHHHHhCchhh-------hhhcCCCCcHHHHHHHcCCHHH
Q 038664          171 --EKLSVLDHRGPNDLTLLHIAII--KSNFV-------VMAKILEAKRDLI-------NVLDKRDRNPLHYAAALGHFEI  232 (464)
Q Consensus       171 --~~~~~~~~~~~~~~~~l~~a~~--~~~~~-------~~~~ll~~~~~~~-------~~~~~~g~t~L~~a~~~~~~~~  232 (464)
                        .+.++ +..+..|.||||+|+.  .++.+       ++++|++.+++ +       +..|..|.||||+|+..|+.++
T Consensus       159 ~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~  236 (256)
T 2etb_A          159 PHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR-LCPTVQLEEISNHQGLTPLKLAAKEGKIEI  236 (256)
T ss_dssp             SSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH-HSTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCC-cccccccccccCCCCCCHHHHHHHhCCHHH
Confidence              55554 5555666666666665  55555       55666665554 3       4555555555555555555555


Q ss_pred             HHHHhhcCCC
Q 038664          233 ACRLSDEDDT  242 (464)
Q Consensus       233 v~~Ll~~~~~  242 (464)
                      +++|+++|..
T Consensus       237 v~~Ll~~g~~  246 (256)
T 2etb_A          237 FRHILQREFS  246 (256)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHhCCCC
Confidence            5555555543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=9.3e-33  Score=248.27  Aligned_cols=221  Identities=16%  Similarity=0.191  Sum_probs=151.0

Q ss_pred             hhcCCCCCcHHHHHHHcCCHHHHHHHHHh----CCcccc---ccccCCCcHHHHHHHc---CCHHHHHHHHHhcCcCcCC
Q 038664          109 RKQDEEGNTPLHNAVRKCDGKMAFTMIRK----DPELIC---YINKAGQSPLSLAIDA---GLTHIACCIIKEKLSVLDH  178 (464)
Q Consensus       109 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----~~~~~~---~~~~~g~t~l~~A~~~---g~~~~~~~Ll~~~~~~~~~  178 (464)
                      +..+..|.||||+|+..|+.++++.|++.    +..+..   ..+..|.||||+|+..   |+.+++++|++.+.+... 
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~-   85 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS-   85 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC-
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc-
Confidence            45667777777777777777777776663    222211   2355666777776665   666666666666543200 


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccC---------
Q 038664          179 RGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDC---------  249 (464)
Q Consensus       179 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~---------  249 (464)
                                          ++.++...   ....|..|.||||+|+..|+.+++++|+++|++++ ..+.         
T Consensus        86 --------------------~~~~i~~~---~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~  141 (273)
T 2pnn_A           86 --------------------LKQFVNAS---YTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-AAANGDFFKKTKG  141 (273)
T ss_dssp             --------------------HHHHHTCC---CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBCSGGGSSCSS
T ss_pred             --------------------hhHHhhcc---cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccccccccccccc
Confidence                                01111111   12245678888888888888888888888877776 3443         


Q ss_pred             -----CCCCcccccccCCcHHHHHHHHH---HCCCcccccccCCCchhHHHHhcCc---------hHHHHHHhcCcchhh
Q 038664          250 -----NGQSPLHLASENGKLSLLKRLLH---SYPDSIEFLDKKNRNILHLAAQNGH---------ANVVVFISKLPEIED  312 (464)
Q Consensus       250 -----~g~tpL~~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~L~~A~~~~~---------~~~~~~L~~~~~~~~  312 (464)
                           .|.||||+|+..|+.+++++|++   .+.+ ++.+|..|+||||+|+..++         .+++++|++.   ++
T Consensus       142 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~---ga  217 (273)
T 2pnn_A          142 RPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL---GA  217 (273)
T ss_dssp             SCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH---HH
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh---hh
Confidence                 79999999999999999999999   7777 59999999999999999887         7889999887   67


Q ss_pred             hhh-------ccCCCCCcHHHHHHHcCCchHHHHHHhcccc-ccccccccCCChH
Q 038664          313 MIN-------SSDLEGNTPLHLAAINNHFNIVLILARNMRV-NIRATNEKKQTAL  359 (464)
Q Consensus       313 ~~~-------~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~-d~~~~n~~g~t~l  359 (464)
                      +++       .+|..|+||||+|++.|+.+++++|+++ |+ |+......+.+|-
T Consensus       218 ~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR-EIHEPECRHAAAHHHH  271 (273)
T ss_dssp             HHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HTC-------------
T ss_pred             hcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHC-CCCCchhhhhhhhhcc
Confidence            775       5899999999999999999999999987 77 8888877777664

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.98  E-value=1.3e-32  Score=244.91  Aligned_cols=205  Identities=17%  Similarity=0.197  Sum_probs=146.3

Q ss_pred             CCcHHHHHHHcCCHH----HHHHHHHhCCcccc---ccccCCCcHHHHHHHc---CCHHHHHHHHHhcCcCcCCCCCCCC
Q 038664          115 GNTPLHNAVRKCDGK----MAFTMIRKDPELIC---YINKAGQSPLSLAIDA---GLTHIACCIIKEKLSVLDHRGPNDL  184 (464)
Q Consensus       115 g~t~L~~A~~~~~~~----~~~~Ll~~~~~~~~---~~~~~g~t~l~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~~~  184 (464)
                      |+||||+|+..|+.+    ++++|++.+.++..   ..+..|.||||+|+..   |+.+++++|++.+.+. +..+.   
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~-~~~~~---   77 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDS-GNPKP---   77 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHT-TCSSC---
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcc-cchhh---
Confidence            566677777666665    44555556655322   1456666666666666   6666666666665544 11110   


Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCC-------------C
Q 038664          185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCN-------------G  251 (464)
Q Consensus       185 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~-------------g  251 (464)
                                       ++...   ....|..|.||||+|+..|+.+++++|+++|++++ ..+..             |
T Consensus        78 -----------------~~~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~g  136 (256)
T 2etb_A           78 -----------------LVNAQ---CTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFFQKHQGTCFYFG  136 (256)
T ss_dssp             -----------------GGGCC---CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCSSSCCCSC
T ss_pred             -----------------hcccc---cccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccccccccccccccccCC
Confidence                             00000   11234567777777777777777777777777666 34443             9


Q ss_pred             CCcccccccCCcHHHHHHHHH---HCCCcccccccCCCchhHHHHh--cCchH-------HHHHHhcCcchhhhh-----
Q 038664          252 QSPLHLASENGKLSLLKRLLH---SYPDSIEFLDKKNRNILHLAAQ--NGHAN-------VVVFISKLPEIEDMI-----  314 (464)
Q Consensus       252 ~tpL~~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~L~~A~~--~~~~~-------~~~~L~~~~~~~~~~-----  314 (464)
                      .||||+|+..|+.+++++|++   ++.+ ++.+|..|+||||+|+.  .++.+       ++++|++.   ++++     
T Consensus       137 ~tpL~~A~~~~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~---ga~~~~~~~  212 (256)
T 2etb_A          137 ELPLSLAACTKQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM---GARLCPTVQ  212 (256)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH---HHHHSTTCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc---CCCcccccc
Confidence            999999999999999999999   7777 58999999999999998  78887       99999887   7778     


Q ss_pred             --hccCCCCCcHHHHHHHcCCchHHHHHHhccccccc
Q 038664          315 --NSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIR  349 (464)
Q Consensus       315 --~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~  349 (464)
                        +.+|..|+||||+|++.|+.+++++|+++ |.+..
T Consensus       213 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~  248 (256)
T 2etb_A          213 LEEISNHQGLTPLKLAAKEGKIEIFRHILQR-EFSGA  248 (256)
T ss_dssp             GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HHHHH
T ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCC
Confidence              88999999999999999999999999976 65543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=2.3e-33  Score=260.39  Aligned_cols=281  Identities=12%  Similarity=0.048  Sum_probs=197.4

Q ss_pred             CCchhHHHHh-cCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCC
Q 038664           38 RDTALHIAAR-FGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGN  116 (464)
Q Consensus        38 g~t~Lh~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~  116 (464)
                      +.+++++|.. .++.++++++++++.+        +.||||+|++.|+.+++++|++.++....       ....+..|.
T Consensus        65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~--------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~-------~~~~~~~~~  129 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLWSDAHKKGIK--------SEVICFVAAITGCSSALDTLCLLLTSDEI-------VKVIQAENY  129 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHHHHHHHHTCC--------HHHHHHHHHHHCCHHHHHHHTTC--CCSS-------CC--CHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCC--------cCCHHHHHHHcCCHHHHHHHHHcCCcHHH-------HHHhccCCC
Confidence            3567888876 5788999999988766        35999999999999999999998873210       112344567


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCcc--ccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCC--CCCCCCCHHHHHH-
Q 038664          117 TPLHNAVRKCDGKMAFTMIRKDPEL--ICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDH--RGPNDLTLLHIAI-  191 (464)
Q Consensus       117 t~L~~A~~~~~~~~~~~Ll~~~~~~--~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~--~~~~~~~~l~~a~-  191 (464)
                      ||||+|+..|+.+++++|++.+++.  .+..+.+ .||||+|+..|+.+++++|+++++++ +.  .+..|.||||+|+ 
T Consensus       130 tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~  207 (376)
T 2aja_A          130 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAV  207 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHH
Confidence            8999999999999999999999642  1122233 89999999999999999999988875 33  5666789999999 


Q ss_pred             HcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHH----
Q 038664          192 IKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLL----  267 (464)
Q Consensus       192 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v----  267 (464)
                      .+|+.+++++|++.+..        |.||||+|+..|+.+++++|++++++... .+    ++++.|+..|+.+++    
T Consensus       208 ~~G~~eiv~~Ll~~ga~--------~~taL~~Aa~~g~~evv~lL~~~ga~~~~-~~----~~l~~A~~~g~~~vv~~~~  274 (376)
T 2aja_A          208 GRGHHNVINFLLDCPVM--------LAYAEIHEFEYGEKYVNPFIARHVNRLKE-MH----DAFKLSNPDGVFDLVTKSE  274 (376)
T ss_dssp             TTCCHHHHHHHTTSHHH--------HHHHHHCTTTTTTTTHHHHHHHHHHHHHH-HH----TTTTTTSSSSCCCCSSHHH
T ss_pred             HCCCHHHHHHHHhCCCc--------cchHHHHHHHCCCHHHHHHHHhcCccccc-cc----HHHHHHHHCCChhhhcHHh
Confidence            99999999999885432        67899999999999999999988876652 22    478888888887743    


Q ss_pred             --------HHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhh--hccCCCCCcHHHHHHHcCCchHH
Q 038664          268 --------KRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMI--NSSDLEGNTPLHLAAINNHFNIV  337 (464)
Q Consensus       268 --------~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~--~~~d~~g~t~Lh~A~~~~~~~~v  337 (464)
                              +.|+..+.                   .+..+.+++|++.+......  ......++||||+|++.|+.+++
T Consensus       275 ~~~~~~~~~~li~~~~-------------------~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v  335 (376)
T 2aja_A          275 CLQGFYMLRNLIRRND-------------------EVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGAC  335 (376)
T ss_dssp             HHHHHHHHHHHHHHCC-------------------GGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHH
T ss_pred             hhhhHHHHHHHHHcch-------------------hhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHH
Confidence                    34444331                   12356677777754322222  22344678999999999999999


Q ss_pred             HHHHhccccccccccccCCChHHhhccCchhhHH
Q 038664          338 LILARNMRVNIRATNEKKQTALAIVQPSLHQNDI  371 (464)
Q Consensus       338 ~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~~  371 (464)
                      ++|++.    ...++..|+||+++|..+++.+..
T Consensus       336 ~lLl~~----~~v~~~~~~~~~~~~~~~~~~~~~  365 (376)
T 2aja_A          336 ALLLSI----PSVLALTKANNYYINETGGRLDLR  365 (376)
T ss_dssp             HHHTTS----HHHHHSCC----------------
T ss_pred             HHHHcC----hHHHHHHHHhccccccccccccHH
Confidence            999975    367899999999999988876653

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=3e-31  Score=236.73  Aligned_cols=204  Identities=18%  Similarity=0.207  Sum_probs=138.0

Q ss_pred             cCCCCchhHHHHhcCCHHHHHHHH----HhCCccccccc----cCCCCHHHHHH---HhCCHHHHHHHhcccCCCCCCcc
Q 038664           35 SQNRDTALHIAARFGHKNVVMEIL----ELRPDLVSVEN----HKSETPMHVAA---RAGNFGVAKIFMRPHGNGNNTGT  103 (464)
Q Consensus        35 ~~~g~t~Lh~A~~~g~~~~v~~Ll----~~~~~~~~~~~----~~g~t~L~~A~---~~g~~~~v~~Ll~~~~~~~~~~~  103 (464)
                      +..++|+||.|+..|+.+.++.|+    +.+.+ ++..+    ..|.||||+|+   ..|+.+++++|++.+++......
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            456889999999999999655554    48887 44444    67999999999   67999999999998865431100


Q ss_pred             h-HHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccc--------------cCCCcHHHHHHHcCCHHHHHHH
Q 038664          104 F-DDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYIN--------------KAGQSPLSLAIDAGLTHIACCI  168 (464)
Q Consensus       104 ~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~g~t~l~~A~~~g~~~~~~~L  168 (464)
                      . ...+...|..|.||||+|+..|+.+++++|++.++++ +..+              ..|.||||+|+..|+.+++++|
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  159 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL  159 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred             hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence            0 0012234457888888888888888888888888774 3444              4566666666666666666666


Q ss_pred             HH---hcCcCcCCCCCCCCCHHHHHHHcCC---------HHHHHHHHHhCchhh-------hhhcCCCCcHHHHHHHcCC
Q 038664          169 IK---EKLSVLDHRGPNDLTLLHIAIIKSN---------FVVMAKILEAKRDLI-------NVLDKRDRNPLHYAAALGH  229 (464)
Q Consensus       169 l~---~~~~~~~~~~~~~~~~l~~a~~~~~---------~~~~~~ll~~~~~~~-------~~~~~~g~t~L~~a~~~~~  229 (464)
                      ++   .+.++ +..+..|.||||+|+..++         .++++.|++.+.+ +       +..|..|.||||+|++.|+
T Consensus       160 l~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~g~  237 (260)
T 3jxi_A          160 TENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK-LFPDTNLEALLNNDGLSPLMMAAKTGK  237 (260)
T ss_dssp             HHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             HhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcc-cccccchhhcccCCCCCHHHHHHHcCC
Confidence            66   55555 5666666666666666555         4666666666554 3       4455666666666666666


Q ss_pred             HHHHHHHhhcCCC
Q 038664          230 FEIACRLSDEDDT  242 (464)
Q Consensus       230 ~~~v~~Ll~~~~~  242 (464)
                      .+++++|+++|..
T Consensus       238 ~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          238 IGIFQHIIRREIA  250 (260)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC
Confidence            6666666665544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=2e-31  Score=237.83  Aligned_cols=207  Identities=15%  Similarity=0.143  Sum_probs=146.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH----hCCccccc---cccCCCcHHHHHH---HcCCHHHHHHHHHhcCcCcCCCCCC
Q 038664          113 EEGNTPLHNAVRKCDGKMAFTMIR----KDPELICY---INKAGQSPLSLAI---DAGLTHIACCIIKEKLSVLDHRGPN  182 (464)
Q Consensus       113 ~~g~t~L~~A~~~~~~~~~~~Ll~----~~~~~~~~---~~~~g~t~l~~A~---~~g~~~~~~~Ll~~~~~~~~~~~~~  182 (464)
                      ..++|+||.|+..|+.+.++.|++    .+.++...   .+..|.||||+|+   ..|+.+++++|++.+.+...     
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~-----   77 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGN-----   77 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTC-----
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccc-----
Confidence            445666666666666663333333    45443211   1244555555555   44555555555555443200     


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCcccccc--------------
Q 038664          183 DLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERD--------------  248 (464)
Q Consensus       183 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~--------------  248 (464)
                                      ...++.  . ..+..|..|.||||+|+..|+.+++++|+++|++++. .+              
T Consensus        78 ----------------~~~~~~--~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~~~~~~~~~~  137 (260)
T 3jxi_A           78 ----------------MREFIN--S-PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHA-QARGRFFQPKDEGGYF  137 (260)
T ss_dssp             ----------------HHHHHT--C-CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCEECCCSSSCCCCSC
T ss_pred             ----------------hHhhhc--c-cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCc-cccccccCcccccccc
Confidence                            000000  1 1233455788999999999999999999998888773 44              


Q ss_pred             CCCCCcccccccCCcHHHHHHHHH---HCCCcccccccCCCchhHHHHhcCc---------hHHHHHHhcCcchhhhh--
Q 038664          249 CNGQSPLHLASENGKLSLLKRLLH---SYPDSIEFLDKKNRNILHLAAQNGH---------ANVVVFISKLPEIEDMI--  314 (464)
Q Consensus       249 ~~g~tpL~~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~L~~A~~~~~---------~~~~~~L~~~~~~~~~~--  314 (464)
                      ..|.||||+|+..|+.+++++|++   .+.+ ++.+|..|+||||+|+..++         .+++++|++.   ++++  
T Consensus       138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~---ga~~~~  213 (260)
T 3jxi_A          138 YFGELPLSLAACTNQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK---CAKLFP  213 (260)
T ss_dssp             CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH---HHHHCT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh---Cccccc
Confidence            579999999999999999999999   7777 59999999999999998777         6888998887   6777  


Q ss_pred             -----hccCCCCCcHHHHHHHcCCchHHHHHHhccccccc
Q 038664          315 -----NSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIR  349 (464)
Q Consensus       315 -----~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~  349 (464)
                           +.+|..|+||||+|++.|+.+++++|+++ |.+..
T Consensus       214 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~  252 (260)
T 3jxi_A          214 DTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR-EIADA  252 (260)
T ss_dssp             TCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HHHHH
T ss_pred             ccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHh-CCCcc
Confidence                 67999999999999999999999999987 55443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=1.3e-30  Score=217.10  Aligned_cols=170  Identities=21%  Similarity=0.214  Sum_probs=148.3

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCC
Q 038664          183 DLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENG  262 (464)
Q Consensus       183 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  262 (464)
                      +.+|||.|+..|+.++++++++.++..++..+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-ILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch-hhcccCCCHHHHHHHCC
Confidence            45789999999999999999998888788889999999999999999999999999998877 57888999999999999


Q ss_pred             cHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHh
Q 038664          263 KLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILAR  342 (464)
Q Consensus       263 ~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  342 (464)
                      +.+++++|++++.+ ++.+|..|+||||+|+..++.+++++|++.   +++++.+|..|+||||+|++.++.+++++|++
T Consensus        81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (172)
T 3v30_A           81 YTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLAR---GADLTTEADSGYTPMDLAVALGYRKVQQVIEN  156 (172)
T ss_dssp             CHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCHHHHHHHhCcHHHHHHHHH
Confidence            99999999999888 588999999999999999999999999987   78899999999999999999999999999997


Q ss_pred             ccccccccccccCCCh
Q 038664          343 NMRVNIRATNEKKQTA  358 (464)
Q Consensus       343 ~~~~d~~~~n~~g~t~  358 (464)
                      + ++++..+|..|.||
T Consensus       157 ~-~~~~~~~~~~~~~p  171 (172)
T 3v30_A          157 H-ILKLFQSNLVPADP  171 (172)
T ss_dssp             H-HHHHSCC-------
T ss_pred             H-HHHHhcccCCCCCC
Confidence            6 99999999999887

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=8.9e-31  Score=235.05  Aligned_cols=194  Identities=21%  Similarity=0.274  Sum_probs=140.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCcC-cCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHH--
Q 038664          149 GQSPLSLAIDAGLTHIACCIIKEKLSV-LDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAA--  225 (464)
Q Consensus       149 g~t~l~~A~~~g~~~~~~~Ll~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~--  225 (464)
                      ..+++|.|+..++.+.++.+++.+.+. .+..|..|.||||+|+..|+.+++++|++.++..++..+..|.||||+|+  
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            345566666666666666666554431 26667777777777777777777777777776446777777777777777  


Q ss_pred             ---HcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHH
Q 038664          226 ---ALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVV  302 (464)
Q Consensus       226 ---~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~  302 (464)
                         ..++.+++++|++.|.... ..+..|+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.++++
T Consensus       156 ~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHH
Confidence               5567777777777776655 4666777888888888888888888877777 4777788888888888888888888


Q ss_pred             HHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhcccc
Q 038664          303 FISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRV  346 (464)
Q Consensus       303 ~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~  346 (464)
                      +|++..  +++++.+|..|+||||+|++.|+.+++++|+++.++
T Consensus       234 ~Ll~~~--gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i  275 (276)
T 4hbd_A          234 LLLAVP--SCDISLTDRDGSTALMVALDAGQSEIASMLYSRMNI  275 (276)
T ss_dssp             HHHTST--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred             HHHhcC--CCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence            877621  567777788888888888888888888888776443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=4e-32  Score=252.03  Aligned_cols=275  Identities=11%  Similarity=0.097  Sum_probs=191.1

Q ss_pred             cCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCcc--ccccccCCCCHHHHHHHhCCHHHHHHH
Q 038664           14 RGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDL--VSVENHKSETPMHVAARAGNFGVAKIF   91 (464)
Q Consensus        14 ~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~~A~~~g~~~~v~~L   91 (464)
                      .++.+.++.+++.        +.+++||||+||..|+.++|++|++.++..  ....+..|.||||+|+..|+.++|++|
T Consensus        76 ~~~~~~~~~l~~~--------g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~L  147 (376)
T 2aja_A           76 RNAKQLWSDAHKK--------GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRL  147 (376)
T ss_dssp             TTCTTHHHHHHHH--------TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHc--------CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHH
Confidence            3555555555543        234569999999999999999999998731  123456788999999999999999999


Q ss_pred             hcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccc-ccccCCCcHHHHHH-HcCCHHHHHHHH
Q 038664           92 MRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELIC-YINKAGQSPLSLAI-DAGLTHIACCII  169 (464)
Q Consensus        92 l~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~~g~t~l~~A~-~~g~~~~~~~Ll  169 (464)
                      ++++++..     ...++..+   .||||+|+..|+.+++++|+++++++.. ..+..|.||||+|+ ..|+.+++++|+
T Consensus       148 l~~gad~~-----~~~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll  219 (376)
T 2aja_A          148 CELAPTEI-----MAMIQAEN---YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLL  219 (376)
T ss_dssp             HHSCTTTH-----HHHHSHHH---HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHT
T ss_pred             HhCCCCcc-----ccccCCCC---CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHH
Confidence            99986521     00122222   8999999999999999999999988532 26788999999999 999999999999


Q ss_pred             HhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHH------------HHHh
Q 038664          170 KEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIA------------CRLS  237 (464)
Q Consensus       170 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v------------~~Ll  237 (464)
                      +.+..        +.|||++|+..|+.+++++|++.+.+ ++..+    ++++.|+..|+.+++            +.|+
T Consensus       220 ~~ga~--------~~taL~~Aa~~g~~evv~lL~~~ga~-~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li  286 (376)
T 2aja_A          220 DCPVM--------LAYAEIHEFEYGEKYVNPFIARHVNR-LKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLI  286 (376)
T ss_dssp             TSHHH--------HHHHHHCTTTTTTTTHHHHHHHHHHH-HHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHH
T ss_pred             hCCCc--------cchHHHHHHHCCCHHHHHHHHhcCcc-ccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHH
Confidence            96642        68999999999999999999999876 45444    478888888887743            4444


Q ss_pred             hcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcc----cccccCCCchhHHHHhcCchHHHHHHhcCcchhhh
Q 038664          238 DEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSI----EFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDM  313 (464)
Q Consensus       238 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~----~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~  313 (464)
                      .++                   ..+..+.+++|++......    ......+.+|||+|++.|+.+++++|++.+     
T Consensus       287 ~~~-------------------~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~-----  342 (376)
T 2aja_A          287 RRN-------------------DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP-----  342 (376)
T ss_dssp             HHC-------------------CGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH-----
T ss_pred             Hcc-------------------hhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh-----
Confidence            443                   1234678888886432100    112345678999999999999999999873     


Q ss_pred             hhccCCCCCcHHHHHHHcCCchHHHHHHh
Q 038664          314 INSSDLEGNTPLHLAAINNHFNIVLILAR  342 (464)
Q Consensus       314 ~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  342 (464)
                       ..++..|+|++.+|-..|+.++++.-+.
T Consensus       343 -~v~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (376)
T 2aja_A          343 -SVLALTKANNYYINETGGRLDLRAVALE  370 (376)
T ss_dssp             -HHHHSCC---------------------
T ss_pred             -HHHHHHHHhccccccccccccHHHHHHH
Confidence             4567789999999999999998876543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=5.7e-29  Score=207.13  Aligned_cols=158  Identities=15%  Similarity=0.164  Sum_probs=89.7

Q ss_pred             CchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcH
Q 038664           39 DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTP  118 (464)
Q Consensus        39 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~  118 (464)
                      .||||.|+..|+.+++++|++.+++.++..+..|.||||+|+..|+.+++++|++.+++.          +..+..|.||
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~g~t~   72 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP----------HILAKERESA   72 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT----------TCCCTTCCCH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc----------hhhcccCCCH
Confidence            456666666666666666666655555555566666666666666666666666655542          2445555666


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHH
Q 038664          119 LHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVV  198 (464)
Q Consensus       119 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  198 (464)
                      ||+|+..++.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..++.++
T Consensus        73 L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~  150 (172)
T 3v30_A           73 LSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKV  150 (172)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHH
Confidence            6666666666666666655555 3344555555555555555555555555555554 4455555555555555555555


Q ss_pred             HHHHHHhCch
Q 038664          199 MAKILEAKRD  208 (464)
Q Consensus       199 ~~~ll~~~~~  208 (464)
                      +++|++++..
T Consensus       151 ~~~L~~~~~~  160 (172)
T 3v30_A          151 QQVIENHILK  160 (172)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=6.5e-29  Score=204.68  Aligned_cols=159  Identities=18%  Similarity=0.216  Sum_probs=127.1

Q ss_pred             CcccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHH
Q 038664            2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAAR   81 (464)
Q Consensus         2 ~~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~   81 (464)
                      +...++|+.|++.|+.+.++.+++. +.+++..+..|+||||+|+. |+.+++++|++.+++ ++.++..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~   79 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHDAAR   79 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhC-CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence            4566788888888888888887764 45777778888888888888 888888888888877 67778888888888888


Q ss_pred             hCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCC
Q 038664           82 AGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGL  161 (464)
Q Consensus        82 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~  161 (464)
                      .|+.+++++|++.+++.          +.++..|.||||+|+..|+.+++++|++.+++..+..+..|.|||++|+..|+
T Consensus        80 ~~~~~~v~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  149 (162)
T 1ihb_A           80 AGFLDTLQTLLEFQADV----------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR  149 (162)
T ss_dssp             HTCHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHcCCCC----------CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC
Confidence            88888888888887763          36777888888888888888888888888887666777888888888888888


Q ss_pred             HHHHHHHHHhcC
Q 038664          162 THIACCIIKEKL  173 (464)
Q Consensus       162 ~~~~~~Ll~~~~  173 (464)
                      .+++++|+++|+
T Consensus       150 ~~~~~~Ll~~GA  161 (162)
T 1ihb_A          150 NEVVSLMQANGA  161 (162)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHHhCC
Confidence            888888888765

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=7.4e-29  Score=210.39  Aligned_cols=161  Identities=19%  Similarity=0.225  Sum_probs=96.9

Q ss_pred             ccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhc
Q 038664           32 LDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQ  111 (464)
Q Consensus        32 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  111 (464)
                      +.++..|+||||+|+..|+.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++.+++.          +.+
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~   97 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV----------NTK   97 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT----------TCC
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCC----------CCC
Confidence            34556666666666666666666666666665 4556666666666666666666666666666552          345


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHH
Q 038664          112 DEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAI  191 (464)
Q Consensus       112 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~  191 (464)
                      +..|.||||+|+..++.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++++.++ +..+..|.||+++|+
T Consensus        98 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~  175 (192)
T 2rfm_A           98 DFSGKTPLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASAR  175 (192)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHH
Confidence            55666666666666666666666666555 3445555556666666555555555555555554 444555555555555


Q ss_pred             HcCCHHHHHHHHHh
Q 038664          192 IKSNFVVMAKILEA  205 (464)
Q Consensus       192 ~~~~~~~~~~ll~~  205 (464)
                      ..++.+++++|++.
T Consensus       176 ~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          176 IFGRQEVIKIFTEV  189 (192)
T ss_dssp             HTTCHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHhc
Confidence            55555555555543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.3e-29  Score=227.40  Aligned_cols=191  Identities=19%  Similarity=0.210  Sum_probs=105.9

Q ss_pred             CCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCc
Q 038664           72 SETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQS  151 (464)
Q Consensus        72 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  151 (464)
                      +.+++|.|+..|+.+.++.+++.+.+        ..++.+|..|.||||+|+..|+.+++++|++.++...+..+..|.|
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~--------~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t  147 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLD--------YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYS  147 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHH--------HHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCC
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHh--------hcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCC
Confidence            34566777777777777776654432        1255666667777777777777777777777666435556666666


Q ss_pred             HHHHHH-----HcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHH
Q 038664          152 PLSLAI-----DAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAA  226 (464)
Q Consensus       152 ~l~~A~-----~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~  226 (464)
                      ||++|+     ..++.+++++|++.+... +..+..|.||||+|+..|+.+++++|++.+++ ++..|.+|+||||+|+.
T Consensus       148 pL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~  225 (276)
T 4hbd_A          148 PIMLTALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACE  225 (276)
T ss_dssp             HHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHH
Confidence            666666     345555555555555443 44444455555555555555555555555444 44445555555555555


Q ss_pred             cCCHHHHHHHhh-cCCCccccccCCCCCcccccccCCcHHHHHHHHHH
Q 038664          227 LGHFEIACRLSD-EDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHS  273 (464)
Q Consensus       227 ~~~~~~v~~Ll~-~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  273 (464)
                      .|+.+++++|++ .|++++ .+|..|.||||+|+..|+.+++++|+++
T Consensus       226 ~g~~~iv~~Ll~~~gad~~-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          226 HGHKEIAGLLLAVPSCDIS-LTDRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             HTCHHHHHHHHTSTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhcCCCCCc-CcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            555555555554 344433 3444444444444444444444444444

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=2.9e-28  Score=201.76  Aligned_cols=159  Identities=13%  Similarity=0.121  Sum_probs=126.5

Q ss_pred             CCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCC
Q 038664           37 NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGN  116 (464)
Q Consensus        37 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~  116 (464)
                      .|.||||.|+..|+.+++++|++.+++ ++.++..|.||||+|+..|+.+++++|++.+++.          +..+..|.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~g~   70 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP----------QLLGKGRE   70 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCCTTCC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC----------CCcCCCCC
Confidence            467888888888888888888888877 6778888888888888888888888888887764          35677788


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCH
Q 038664          117 TPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNF  196 (464)
Q Consensus       117 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~  196 (464)
                      ||||+|+..++.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++++.++ +..+..|.||+++|+..++.
T Consensus        71 t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~  148 (167)
T 3v31_A           71 SALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYR  148 (167)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcH
Confidence            888888888888888888888777 4566777888888888888888888888877776 66777777788877777777


Q ss_pred             HHHHHHHHhCch
Q 038664          197 VVMAKILEAKRD  208 (464)
Q Consensus       197 ~~~~~ll~~~~~  208 (464)
                      +++++|++++..
T Consensus       149 ~~~~~L~~~~~~  160 (167)
T 3v31_A          149 SVQQVIESHLLK  160 (167)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777777776654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=6.7e-31  Score=228.61  Aligned_cols=200  Identities=16%  Similarity=0.098  Sum_probs=133.0

Q ss_pred             HHHHHhCCccc--cccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchh
Q 038664          132 FTMIRKDPELI--CYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDL  209 (464)
Q Consensus       132 ~~Ll~~~~~~~--~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~  209 (464)
                      +.|++++++..  ...+..+.|||+.|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.+.+ 
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-   79 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN-   79 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence            45566655432  233445566777788888888888888777765 67777777888888888888888888777766 


Q ss_pred             hhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCccccc--ccCCcHHHHHHHHHHCCCcccccccCCCc
Q 038664          210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLA--SENGKLSLLKRLLHSYPDSIEFLDKKNRN  287 (464)
Q Consensus       210 ~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  287 (464)
                      ++..|..|+||||+|+..|+.+++++|++.|++++...+..|+||||+|  +..|+.+++++|++.+++ ++..|..|.+
T Consensus        80 ~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~  158 (229)
T 2vge_A           80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVY  158 (229)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEEE
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCchH
Confidence            6777777888888888888888888888777777643345777888877  777777888887777776 4777777777


Q ss_pred             hhHHHHhcCchHHHHHHhcCcchhhh--hhccCCCCCcHHHHHHHcCCchHHHHH
Q 038664          288 ILHLAAQNGHANVVVFISKLPEIEDM--INSSDLEGNTPLHLAAINNHFNIVLIL  340 (464)
Q Consensus       288 ~L~~A~~~~~~~~~~~L~~~~~~~~~--~~~~d~~g~t~Lh~A~~~~~~~~v~~L  340 (464)
                      +++.++..+..   ++|++.   +++  ++.+|..|+||||+|++.|+.++|+.+
T Consensus       159 ~l~~~~~~~~~---~~ll~~---ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          159 ALWDYSAEFGD---ELSFRE---GESVTVLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             ESSCBCCSSTT---BCCBCT---TCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             HHHHHhhcccc---ccCccc---cccccccccCCCcccHHHHHHHcCCcceeehh
Confidence            77755444332   233333   333  556666677777777777766666543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=1.2e-28  Score=204.04  Aligned_cols=159  Identities=19%  Similarity=0.193  Sum_probs=133.5

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccC
Q 038664          182 NDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASEN  261 (464)
Q Consensus       182 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  261 (464)
                      .|.||||.|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+++++ ..+..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHc
Confidence            467888888888888888888888766 77788888888888888888888888888888776 5777888888888888


Q ss_pred             CcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHH
Q 038664          262 GKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILA  341 (464)
Q Consensus       262 g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  341 (464)
                      |+.+++++|++++++ ++.+|..|.||||+|+..++.+++++|++.   +++++.+|..|.||||+|+..|+.+++++|+
T Consensus        80 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  155 (167)
T 3v31_A           80 GYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLES---GADPTIETDSGYNSMDLAVALGYRSVQQVIE  155 (167)
T ss_dssp             TCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            888888888888887 488888889999999999999999988886   6778888888999999999999999999888


Q ss_pred             hccccc
Q 038664          342 RNMRVN  347 (464)
Q Consensus       342 ~~~~~d  347 (464)
                      ++ +.+
T Consensus       156 ~~-~~~  160 (167)
T 3v31_A          156 SH-LLK  160 (167)
T ss_dssp             HH-HHH
T ss_pred             HH-HHH
Confidence            65 443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=3.1e-28  Score=206.55  Aligned_cols=163  Identities=20%  Similarity=0.224  Sum_probs=131.4

Q ss_pred             ccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccc
Q 038664           65 VSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICY  144 (464)
Q Consensus        65 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  144 (464)
                      ++.+|..|.||||+|+..|+.+++++|++.+++.          +..+..|.||||+|+..++.+++++|++.+++ ++.
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~   96 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL----------EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNT   96 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTC
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc----------ccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCC
Confidence            5567888999999999999999999999888763          46778889999999999999999999988877 456


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHH
Q 038664          145 INKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYA  224 (464)
Q Consensus       145 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a  224 (464)
                      .+..|.||||+|+..|+.+++++|++++.++ +..+..|.||||+|+..++.+++++|++.+.+ ++..|..|.||||+|
T Consensus        97 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A  174 (192)
T 2rfm_A           97 KDFSGKTPLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASA  174 (192)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHH
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHH
Confidence            7778888888888888888888888887776 67777777787777777777777777777766 677777777777777


Q ss_pred             HHcCCHHHHHHHhhcC
Q 038664          225 AALGHFEIACRLSDED  240 (464)
Q Consensus       225 ~~~~~~~~v~~Ll~~~  240 (464)
                      +..|+.+++++|++.+
T Consensus       175 ~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          175 RIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHhcc
Confidence            7777777777777653

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=2.4e-28  Score=201.29  Aligned_cols=158  Identities=20%  Similarity=0.223  Sum_probs=111.9

Q ss_pred             CCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCC
Q 038664           37 NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGN  116 (464)
Q Consensus        37 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~  116 (464)
                      ...||||.|+..|+.+++++|++.+++ ++..+..|.||||+|+. |+.+++++|++.+++.          +.++..|.
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~----------~~~~~~g~   71 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP----------DLKDRTGF   71 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT----------TCCCTTSC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCC-ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC----------CCCCCCCC
Confidence            345788888888888888888887777 56777788888888877 8888888888877663          35677777


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCH
Q 038664          117 TPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNF  196 (464)
Q Consensus       117 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~  196 (464)
                      ||||+|+..|+.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++++.+..+..+..|.||||+|+..++.
T Consensus        72 t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~  150 (162)
T 1ihb_A           72 AVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN  150 (162)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCH
Confidence            777777777777777777777766 3455666777777777777777777777666654455555666666666666666


Q ss_pred             HHHHHHHHhCc
Q 038664          197 VVMAKILEAKR  207 (464)
Q Consensus       197 ~~~~~ll~~~~  207 (464)
                      +++++|+++++
T Consensus       151 ~~~~~Ll~~GA  161 (162)
T 1ihb_A          151 EVVSLMQANGA  161 (162)
T ss_dssp             HHHHHHHHTC-
T ss_pred             HHHHHHHHhCC
Confidence            66666665553

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.1e-27  Score=198.70  Aligned_cols=157  Identities=22%  Similarity=0.279  Sum_probs=98.5

Q ss_pred             CCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCC
Q 038664           36 QNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEG  115 (464)
Q Consensus        36 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g  115 (464)
                      ..+.++||+||..|+.++|++|++++++ ++.++..|.||||+|+..|+.+++++|++.+++.          +..+..|
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~g   80 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV----------NAVDHAG   80 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCCTTS
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------CccCCCC
Confidence            3445666666666666666666666665 4556666666666666666666666666665552          2455666


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCC
Q 038664          116 NTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSN  195 (464)
Q Consensus       116 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~  195 (464)
                      .||||+|+..|+.+++++|++.+++ .+..+..|.||||+|+..|+.+++++|++++.++ +..+..|.|||++|+..++
T Consensus        81 ~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~  158 (169)
T 2y1l_E           81 MTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGN  158 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCC
Confidence            6666666666666666666666655 3455566666666666666666666666666655 5556666666666666666


Q ss_pred             HHHHHHHHHh
Q 038664          196 FVVMAKILEA  205 (464)
Q Consensus       196 ~~~~~~ll~~  205 (464)
                      .+++++|++.
T Consensus       159 ~~~~~~L~~~  168 (169)
T 2y1l_E          159 EDLAEILQKL  168 (169)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHHc
Confidence            6666666553

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=8.9e-28  Score=199.14  Aligned_cols=156  Identities=25%  Similarity=0.362  Sum_probs=119.4

Q ss_pred             ccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC
Q 038664            4 VARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG   83 (464)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g   83 (464)
                      ..+.|+.|++.|+.+.++.+++. +.+++..+..|.||||+|+..|+.+++++|++++++ ++..+..|.||||+|+..|
T Consensus        14 ~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   91 (169)
T 2y1l_E           14 LGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFG   91 (169)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             ccchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcC
Confidence            34677888888888888777765 347777777788888888888888888888888777 6667777888888888888


Q ss_pred             CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHH
Q 038664           84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTH  163 (464)
Q Consensus        84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~  163 (464)
                      +.+++++|++.+++.          +.++..|.||||+|+..++.+++++|++.+++ .+..|..|.||+++|+..|+.+
T Consensus        92 ~~~~~~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~  160 (169)
T 2y1l_E           92 HLEIVEVLLKNGADV----------NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNED  160 (169)
T ss_dssp             CHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHcCCCC----------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHH
Confidence            888888888877763          36677788888888888888888888888777 4566777888888888888888


Q ss_pred             HHHHHHHhc
Q 038664          164 IACCIIKEK  172 (464)
Q Consensus       164 ~~~~Ll~~~  172 (464)
                      ++++|++.|
T Consensus       161 ~~~~L~~~G  169 (169)
T 2y1l_E          161 LAEILQKLN  169 (169)
T ss_dssp             HHHHHHTC-
T ss_pred             HHHHHHHcC
Confidence            888877653

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=9.8e-29  Score=207.07  Aligned_cols=161  Identities=21%  Similarity=0.259  Sum_probs=96.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhc
Q 038664          216 RDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQN  295 (464)
Q Consensus       216 ~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~  295 (464)
                      ++.++||.|+..|+.+++++|++.+.......+..|+||||+|+..|+.+++++|++.+.+ ++..|..|+||||+|+..
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence            3455666666666666666666654433334555666666666666666666666666555 356666666666666666


Q ss_pred             CchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCchhhH--HHh
Q 038664          296 GHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQND--ILE  373 (464)
Q Consensus       296 ~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~--~l~  373 (464)
                      ++.+++++|++.   +.+++.+|..|+||||+|+..++.+++++|+++ |++++.+|..|+||+++|...++...  ++.
T Consensus        83 ~~~~~v~~Ll~~---g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A           83 GHRDIVQKLLQY---KADINAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             TCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHc---CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            666666666655   455666666666666666666666666666654 66666666666666666665544433  355


Q ss_pred             hcCCCCCC
Q 038664          374 GHGGSASG  381 (464)
Q Consensus       374 ~~g~~~~~  381 (464)
                      .+|+.+..
T Consensus       159 ~~g~~~~~  166 (179)
T 3f6q_A          159 KMGQNLNR  166 (179)
T ss_dssp             HTTCCCSC
T ss_pred             HhhcCccc
Confidence            55555443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=6.6e-28  Score=199.22  Aligned_cols=156  Identities=26%  Similarity=0.362  Sum_probs=110.8

Q ss_pred             ccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC
Q 038664            4 VARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG   83 (464)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g   83 (464)
                      ..++|+.|++.|+.+.++.+++..+.+++..+..|.||||+|+..|+.+++++|++++++ ++.++..|.||||+|+..|
T Consensus         8 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   86 (165)
T 3twr_A            8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYG   86 (165)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHcC
Confidence            356777777777777777777766656666666777777777777777777777777776 5667777777777777777


Q ss_pred             CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHH
Q 038664           84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTH  163 (464)
Q Consensus        84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~  163 (464)
                      +.+++++|++.+++.          +.+|..|.||||+|+..|+.+++++|++.+++ ++..|..|.||+++|.. ++.+
T Consensus        87 ~~~~v~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~a~~-~~~~  154 (165)
T 3twr_A           87 HYEVAELLVKHGAVV----------NVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD-GDTD  154 (165)
T ss_dssp             CHHHHHHHHHTTCCT----------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTGGGSCT-TCHH
T ss_pred             cHHHHHHHHhCCCCC----------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCChhHhHhc-CChH
Confidence            777777777777663          35666777777777777777777777777766 45666777777777655 6677


Q ss_pred             HHHHHHHhc
Q 038664          164 IACCIIKEK  172 (464)
Q Consensus       164 ~~~~Ll~~~  172 (464)
                      ++++|++.+
T Consensus       155 i~~~L~~~g  163 (165)
T 3twr_A          155 IQDLLRGDA  163 (165)
T ss_dssp             HHHHHHTC-
T ss_pred             HHHHHhhcc
Confidence            777776654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=3.2e-30  Score=224.30  Aligned_cols=197  Identities=13%  Similarity=0.110  Sum_probs=165.5

Q ss_pred             HHHHHHhcCcC--cCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCC
Q 038664          165 ACCIIKEKLSV--LDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDT  242 (464)
Q Consensus       165 ~~~Ll~~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~  242 (464)
                      ++.|++.+.++  .+..+..+.||||.|+..|+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|++.|++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            35677777665  234455677889999999999999999999987 899999999999999999999999999999999


Q ss_pred             ccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccc-cCCCchhHHH--HhcCchHHHHHHhcCcchhhhhhccCC
Q 038664          243 LAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLD-KKNRNILHLA--AQNGHANVVVFISKLPEIEDMINSSDL  319 (464)
Q Consensus       243 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~L~~A--~~~~~~~~~~~L~~~~~~~~~~~~~d~  319 (464)
                      ++ .+|..|+||||+|+..|+.+++++|++.+++. +..+ ..|+||||+|  +..++.+++++|++.   +++++.+|.
T Consensus        80 ~n-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~---ga~~~~~~~  154 (229)
T 2vge_A           80 VN-SPDSHGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADV---EQSMGLMNS  154 (229)
T ss_dssp             TT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH---HHHTTTSGG
T ss_pred             CC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHc---CCCcccccC
Confidence            88 68889999999999999999999999999985 7765 6999999999  999999999999987   788999999


Q ss_pred             CCCcHHHHHHHcCCchHHHHHHhccccc--cccccccCCChHHhhccCchhhHH
Q 038664          320 EGNTPLHLAAINNHFNIVLILARNMRVN--IRATNEKKQTALAIVQPSLHQNDI  371 (464)
Q Consensus       320 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d--~~~~n~~g~t~l~~a~~~~~~~~~  371 (464)
                      .|.||+|.++....   .++|++. |++  ++.+|..|+|||++|+..++.+.+
T Consensus       155 ~~~~~l~~~~~~~~---~~~ll~~-ga~~~~~~~d~~G~TpL~~A~~~g~~~~v  204 (229)
T 2vge_A          155 GAVYALWDYSAEFG---DELSFRE-GESVTVLRRDGPEETDWWWAALHGQEGYV  204 (229)
T ss_dssp             GEEEESSCBCCSST---TBCCBCT-TCEEEEEESSCTTCSSEEEEEETTEEEEE
T ss_pred             CchHHHHHHhhccc---cccCccc-cccccccccCCCcccHHHHHHHcCCccee
Confidence            99999997655543   3556654 777  788999999999999998887654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=7.2e-28  Score=201.76  Aligned_cols=159  Identities=23%  Similarity=0.263  Sum_probs=110.6

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCC
Q 038664            5 ARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGN   84 (464)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~   84 (464)
                      .++|+.|++.|+.+.++.+++..+.+++..+..|.||||+|+..|+.+++++|++.+++ ++..+..|.||||+|+..|+
T Consensus         6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~   84 (179)
T 3f6q_A            6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHGH   84 (179)
T ss_dssp             -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCC
Confidence            34567777777777777777766666666677777777777777777777777777766 56666777777777777777


Q ss_pred             HHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHH
Q 038664           85 FGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHI  164 (464)
Q Consensus        85 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~  164 (464)
                      .+++++|++.+++.          +.+|..|.||||+|+..++.+++++|++.+++ ++..+..|.||+++|+..++.++
T Consensus        85 ~~~v~~Ll~~g~~~----------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~  153 (179)
T 3f6q_A           85 RDIVQKLLQYKADI----------NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELL  153 (179)
T ss_dssp             HHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHHHHH
T ss_pred             HHHHHHHHHcCCCC----------CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHHHHHH
Confidence            77777777776663          35666777777777777777777777777666 35566677777777777777777


Q ss_pred             HHHHHHhcCcC
Q 038664          165 ACCIIKEKLSV  175 (464)
Q Consensus       165 ~~~Ll~~~~~~  175 (464)
                      +++|++.+.++
T Consensus       154 ~~~L~~~g~~~  164 (179)
T 3f6q_A          154 RERAEKMGQNL  164 (179)
T ss_dssp             HHHHHHTTCCC
T ss_pred             HHHHHHhhcCc
Confidence            77777766665

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=4.3e-27  Score=191.59  Aligned_cols=150  Identities=20%  Similarity=0.289  Sum_probs=96.7

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCC
Q 038664            5 ARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGN   84 (464)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~   84 (464)
                      .++|+.|++.|+.+.++.+++.+. +++ .+..|.||||+|+..|+.+++++|++.+++ ++..+..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~-~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGA-PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTC-CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCC-CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCh
Confidence            456666677777776666665543 333 455666677777776777777777666666 55566666677777766666


Q ss_pred             HHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHH
Q 038664           85 FGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHI  164 (464)
Q Consensus        85 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~  164 (464)
                      .+++++|++++++.          +.++..|.||||+|+..|+.+++++|++.+++ ++..+..|.||+++|+..|+.++
T Consensus        80 ~~~v~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i  148 (153)
T 1awc_B           80 ANIVEVLLKHGADV----------NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDL  148 (153)
T ss_dssp             HHHHHHHHTTTCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHcCCCC----------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHH
Confidence            66677666666553          35566666666666666666666666666665 34556666666666666666666


Q ss_pred             HHHH
Q 038664          165 ACCI  168 (464)
Q Consensus       165 ~~~L  168 (464)
                      +++|
T Consensus       149 ~~~L  152 (153)
T 1awc_B          149 AEIL  152 (153)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=4e-27  Score=192.56  Aligned_cols=153  Identities=23%  Similarity=0.330  Sum_probs=126.8

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCC
Q 038664            5 ARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGN   84 (464)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~   84 (464)
                      .++|+.|++.|+.+.++.+++..+.+++..+..|.||||+ +..|+.+++++|++.|++ ++.++..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCc
Confidence            4678888888888888888887555777788888888888 888888888888888887 67788888888888888888


Q ss_pred             HHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHH
Q 038664           85 FGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHI  164 (464)
Q Consensus        85 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~  164 (464)
                      .+++++|++.+++.+          .+|..|.||||+|+..|+.+++++|++. ++ .+..+..|.|||++|+..|+.++
T Consensus        81 ~~~v~~Ll~~g~~~~----------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~~~  148 (156)
T 1bd8_A           81 LDTLKVLVEHGADVN----------VPDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQDL  148 (156)
T ss_dssp             HHHHHHHHHTTCCSC----------CCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCHHH
T ss_pred             HHHHHHHHHcCCCCC----------CcCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcHHH
Confidence            888888888887743          6777888888888888888888888888 55 56677888888888888888888


Q ss_pred             HHHHHHh
Q 038664          165 ACCIIKE  171 (464)
Q Consensus       165 ~~~Ll~~  171 (464)
                      +++|+++
T Consensus       149 v~~Ll~~  155 (156)
T 1bd8_A          149 VDILQGH  155 (156)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhh
Confidence            8888764

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=6.7e-28  Score=197.22  Aligned_cols=153  Identities=27%  Similarity=0.339  Sum_probs=124.6

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCc
Q 038664          184 LTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGK  263 (464)
Q Consensus       184 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  263 (464)
                      .++|+.|+..|+.+++++|++..+..++..+..|.||||+ +..|+.+++++|++.|++++ .++..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTC
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCc
Confidence            4678888888888888888877433467778888888888 88888888888888888776 577788888888888888


Q ss_pred             HHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhc
Q 038664          264 LSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARN  343 (464)
Q Consensus       264 ~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  343 (464)
                      .+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++.    .+++.+|..|+||||+|++.|+.+++++|+++
T Consensus        81 ~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           81 LDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE----SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT----SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc----cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            8888888888877 488888888888888888888888888876    56778888888888888888888888888854

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=5.8e-27  Score=190.84  Aligned_cols=151  Identities=18%  Similarity=0.242  Sum_probs=124.1

Q ss_pred             CCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCc
Q 038664           38 RDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNT  117 (464)
Q Consensus        38 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t  117 (464)
                      ..|+||.|+..|+.+++++|++.+++. + .+..|.||||+|+..|+.+++++|++.+++.          +.++..|.|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~g~t   69 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR----------DARTKVDRT   69 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT----------TCCCTTCCC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------CCCCCCCCC
Confidence            358899999999999999999998873 3 5888999999999999999999999988774          467788899


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHH
Q 038664          118 PLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFV  197 (464)
Q Consensus       118 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~  197 (464)
                      |||+|+..|+.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++++.++ +..+..|.|||++|+..|+.+
T Consensus        70 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~  147 (153)
T 1awc_B           70 PLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNED  147 (153)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHH
Confidence            99999999999999999988877 4566777888888888888888888888877776 666777777777777777777


Q ss_pred             HHHHH
Q 038664          198 VMAKI  202 (464)
Q Consensus       198 ~~~~l  202 (464)
                      ++++|
T Consensus       148 i~~~L  152 (153)
T 1awc_B          148 LAEIL  152 (153)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77665

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=2e-28  Score=215.11  Aligned_cols=186  Identities=13%  Similarity=0.051  Sum_probs=134.7

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCccccccc
Q 038664          181 PNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASE  260 (464)
Q Consensus       181 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  260 (464)
                      ..|.||||.|+..++.+.++.|++++.+ ++. +..+.||||.|+..|+.+++++|++.+++++ .+|..|.||||+|+.
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~-~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMR-VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVC   79 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCC-ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH
Confidence            3578888888888888888888888876 443 4678999999999999999999999999877 688999999999999


Q ss_pred             CCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCC-cHHHHH--HHcCCchHH
Q 038664          261 NGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGN-TPLHLA--AINNHFNIV  337 (464)
Q Consensus       261 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~-t~Lh~A--~~~~~~~~v  337 (464)
                      .|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++.   +++++.++..|. ||||+|  +..|+.+++
T Consensus        80 ~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~  155 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVES---GAAVFAMTYSDMQTAADKCEEMEEGYTQCS  155 (239)
T ss_dssp             HTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred             cCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCcceecCCCCcchHHHHHHhhhccHHHH
Confidence            9999999999999988 599999999999999999999999999988   788999998877 999999  788999999


Q ss_pred             HHHHhccccccccc---------cccCCChHHhhccCchhhHHHhh
Q 038664          338 LILARNMRVNIRAT---------NEKKQTALAIVQPSLHQNDILEG  374 (464)
Q Consensus       338 ~~Ll~~~~~d~~~~---------n~~g~t~l~~a~~~~~~~~~l~~  374 (464)
                      ++|++. |++++..         +..++++.+++...+....++..
T Consensus       156 ~~Ll~~-~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~i~vl~~  200 (239)
T 1ycs_B          156 QFLYGV-QEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHR  200 (239)
T ss_dssp             HHHHHH-HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCEEEECCC
T ss_pred             HHHHHh-hhcccccccceEEEEeccCCCCCCcccccCCCEEEEEEe
Confidence            999976 8888876         45578888888876665444443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=5.4e-27  Score=193.71  Aligned_cols=161  Identities=20%  Similarity=0.257  Sum_probs=121.0

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHH
Q 038664          111 QDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIA  190 (464)
Q Consensus       111 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a  190 (464)
                      .+.++.|||+.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|++++.++ +..+..|.||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHH
Confidence            45667788888888888888888887665555666777778888888888888888888877776 67777777888888


Q ss_pred             HHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHH
Q 038664          191 IIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRL  270 (464)
Q Consensus       191 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  270 (464)
                      +..++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++. .++..|.||||+|+. |+.+++++|
T Consensus        83 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~a~~-~~~~i~~~L  159 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT-KKNRDGNTPLDLVKD-GDTDIQDLL  159 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred             HHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCChhHhHhc-CChHHHHHH
Confidence            888888888888877776 67777777788888888778888888777777766 567777777777666 777777777


Q ss_pred             HHHCC
Q 038664          271 LHSYP  275 (464)
Q Consensus       271 l~~~~  275 (464)
                      +++++
T Consensus       160 ~~~gA  164 (165)
T 3twr_A          160 RGDAA  164 (165)
T ss_dssp             HTC--
T ss_pred             hhccc
Confidence            76553

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=1.3e-26  Score=189.30  Aligned_cols=147  Identities=19%  Similarity=0.189  Sum_probs=117.6

Q ss_pred             hhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCc-h
Q 038664          210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRN-I  288 (464)
Q Consensus       210 ~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-~  288 (464)
                      ....+..|.||||+|+..|+.+++++|+++|.+++ ..+..|+||||+|+ .|+.+++++|++++.+ ++.+|..|+| |
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttp   81 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRP   81 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCH
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHH
Confidence            34557889999999999999999999999999887 58889999999996 9999999999999988 5999999999 9


Q ss_pred             hHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhc
Q 038664          289 LHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQ  363 (464)
Q Consensus       289 L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~  363 (464)
                      ||+|+..|+.+++++|++.   +++++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|.||.+-+.
T Consensus        82 L~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~~~~~~  152 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRA---GARLDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNHARIDAAEGPS  152 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHH---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C------------------
T ss_pred             HHHHHHCCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCccCcCcCcccccCC
Confidence            9999999999999999987   788999999999999999999999999999976 9999999999999987443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=2e-26  Score=202.27  Aligned_cols=122  Identities=16%  Similarity=0.168  Sum_probs=36.0

Q ss_pred             CCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCc
Q 038664           38 RDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNT  117 (464)
Q Consensus        38 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t  117 (464)
                      |.||||.|+..|+.+.++.|+++|++ ++ .+..|.||||.|+..|+.+++++|++.+++.          +.+|..|.|
T Consensus         5 g~t~L~~a~~~~~~~~~~~ll~~g~~-~~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~----------~~~d~~g~t   72 (239)
T 1ycs_B            5 GQVSLPPGKRTNLRKTGSERIAHGMR-VK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP----------SLPNDEGIT   72 (239)
T ss_dssp             ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC----------CCCCTTSCC
T ss_pred             ccccCchhhhhhhHHHHHHHhccCCC-cc-cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC----------CCcCCCCCC
Confidence            44444444444444444444444444 11 3333344444444444444444444444332          133344444


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhc
Q 038664          118 PLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEK  172 (464)
Q Consensus       118 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~  172 (464)
                      |||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|++++
T Consensus        73 ~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  126 (239)
T 1ycs_B           73 ALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESG  126 (239)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            44444444444444444444333 2233333333333333333333333333333

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=7.9e-26  Score=180.03  Aligned_cols=131  Identities=21%  Similarity=0.253  Sum_probs=123.0

Q ss_pred             hhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccC-CCch
Q 038664          210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKK-NRNI  288 (464)
Q Consensus       210 ~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-g~t~  288 (464)
                      ++..+..|.||||+|+..|+.+++++|++++.+++ .++..|+||||+|+. |+.+++++|++++++ ++.+|.. |+||
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g~t~   81 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN-ALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATLTRP   81 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTTBCH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCCCH
Confidence            67788999999999999999999999999998887 688999999999999 999999999999998 5999999 9999


Q ss_pred             hHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccc
Q 038664          289 LHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVN  347 (464)
Q Consensus       289 L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d  347 (464)
                      ||+|+..|+.+++++|++.   +++++.+|..|+||||+|++.++.+++++|+++ |+|
T Consensus        82 L~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-Gad  136 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRA---GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA-TGD  136 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHT---CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH-HCC
T ss_pred             HHHHHHcCCHHHHHHHHHc---CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence            9999999999999999987   688999999999999999999999999999976 765

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=1.7e-25  Score=178.15  Aligned_cols=134  Identities=23%  Similarity=0.270  Sum_probs=120.8

Q ss_pred             CCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHH
Q 038664           28 GNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDI  107 (464)
Q Consensus        28 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  107 (464)
                      +.+++..+..|.||||+|+..|+.+++++|++++++ ++.++..|.||||+|+. |+.+++++|++++++.+        
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~--------   71 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN--------   71 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS--------
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC--------
Confidence            357778889999999999999999999999999988 78889999999999999 99999999999988844        


Q ss_pred             HhhcCCC-CCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 038664          108 LRKQDEE-GNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLS  174 (464)
Q Consensus       108 ~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~  174 (464)
                        .++.. |.||||+|+..|+.+++++|++.+++ ++..+..|.|||++|+..++.+++++|+++|++
T Consensus        72 --~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           72 --CADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             --CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             --CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence              67888 89999999999999999999999988 567788999999999999999999999988763

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=3e-26  Score=191.85  Aligned_cols=160  Identities=13%  Similarity=0.038  Sum_probs=122.0

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCchhhhhhc-CCCCcHHHHHHHcCCH----HHHHHHhhcCCCccccccCCCCCccccc
Q 038664          184 LTLLHIAIIKSNFVVMAKILEAKRDLINVLD-KRDRNPLHYAAALGHF----EIACRLSDEDDTLAYERDCNGQSPLHLA  258 (464)
Q Consensus       184 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t~L~~a~~~~~~----~~v~~Ll~~~~~~~~~~~~~g~tpL~~A  258 (464)
                      .++++.|++.|+.+.++.++..+..   ..+ ..|+||||+|+..++.    +++++|+++|++++ .++..|+||||+|
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~~~---~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~TpLh~a   82 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK-SRTKEGTTLFFPL   82 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHSSS---CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS-CCCTTCCCTHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcCcc---cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC-CCCCCCCcHHHHH
Confidence            4667777888888877777776643   233 6688888888888764    47888888888877 5778888888888


Q ss_pred             ccCCc------HHHHHHHHHHCCCcccccccCCC-chhHHHHhcCc-----hHHHHHHhc-CcchhhhhhccCCCCCcHH
Q 038664          259 SENGK------LSLLKRLLHSYPDSIEFLDKKNR-NILHLAAQNGH-----ANVVVFISK-LPEIEDMINSSDLEGNTPL  325 (464)
Q Consensus       259 ~~~g~------~~~v~~Ll~~~~~~~~~~d~~g~-t~L~~A~~~~~-----~~~~~~L~~-~~~~~~~~~~~d~~g~t~L  325 (464)
                      +..|+      .+++++|+++|++ ++.+|..|+ ||||+|+..+.     .+++++|++ .   |++++.+|..|.|||
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~---gad~~~~d~~G~TpL  158 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQS---GLQLLIKDKWGLTAL  158 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTST---TCCTTCCCTTSCCHH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhc---CCCCcccCCCCCCHH
Confidence            87775      5788888888887 588888888 88888888443     457788877 5   678888888888888


Q ss_pred             HHHHHcCCchHHHHHHhcccccccccc
Q 038664          326 HLAAINNHFNIVLILARNMRVNIRATN  352 (464)
Q Consensus       326 h~A~~~~~~~~v~~Ll~~~~~d~~~~n  352 (464)
                      |+|++.++.+++++|... ..+.+.++
T Consensus       159 ~~A~~~~~~~~v~~L~~~-~~~~~~~~  184 (186)
T 3t8k_A          159 EFVKRCQKPIALKMMEDY-IKKYNLKE  184 (186)
T ss_dssp             HHHHTTTCHHHHHHHHHH-HHHHTCCC
T ss_pred             HHHHHcCCHHHHHHHHHH-HHHHhccc
Confidence            888888888888888854 44455444

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=1.7e-25  Score=187.30  Aligned_cols=154  Identities=12%  Similarity=0.033  Sum_probs=131.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhcCCCccccc-CCCCchhHHHHhcCCH----HHHHHHHHhCCccccccccCCCCHHHHHH
Q 038664            6 RVLFRALRRGDAATVRESARLNGNGILDMS-QNRDTALHIAARFGHK----NVVMEILELRPDLVSVENHKSETPMHVAA   80 (464)
Q Consensus         6 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~   80 (464)
                      +.|+.|++.|+.+.++.++..+   ++..+ ..|+||||+|+..|+.    +++++|+++|++ ++.++..|+||||+|+
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHHHH
Confidence            5799999999999999999764   34444 6799999999999985    599999999999 8889999999999999


Q ss_pred             HhCC------HHHHHHHhcccCCCCCCcchHHHHhhcCCCCC-cHHHHHHHcC-----CHHHHHHHHH-hCCcccccccc
Q 038664           81 RAGN------FGVAKIFMRPHGNGNNTGTFDDILRKQDEEGN-TPLHNAVRKC-----DGKMAFTMIR-KDPELICYINK  147 (464)
Q Consensus        81 ~~g~------~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~~-----~~~~~~~Ll~-~~~~~~~~~~~  147 (464)
                      ..|+      .+++++|+++|++.+          .+|..|. ||||+|+..+     +.+++++|++ .|++ ++.+|.
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin----------~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-~~~~d~  152 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADIT----------ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-LLIKDK  152 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSS----------SCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-TTCCCT
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCC----------ccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-CcccCC
Confidence            9987      578999999999854          7889999 9999999844     3568888988 7877 577888


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 038664          148 AGQSPLSLAIDAGLTHIACCIIKEKLS  174 (464)
Q Consensus       148 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~  174 (464)
                      .|.|||++|++.|+.+++++|.+....
T Consensus       153 ~G~TpL~~A~~~~~~~~v~~L~~~~~~  179 (186)
T 3t8k_A          153 WGLTALEFVKRCQKPIALKMMEDYIKK  179 (186)
T ss_dssp             TSCCHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHHHHH
Confidence            899999999998988888888876543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=1.2e-24  Score=177.51  Aligned_cols=142  Identities=18%  Similarity=0.185  Sum_probs=105.3

Q ss_pred             cccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcC
Q 038664           33 DMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQD  112 (464)
Q Consensus        33 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  112 (464)
                      ..+..|.||||+|+..|+.++|++|+++|++ ++..+..|.||||+|+ .|+.+++++|++.+++.          +.++
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~----------~~~d   74 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP----------NCAD   74 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC----------CCCC
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC----------CCcC
Confidence            4567788999999999999999999998887 7778888999999885 88899999999888774          3677


Q ss_pred             CCCCc-HHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHH
Q 038664          113 EEGNT-PLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLH  188 (464)
Q Consensus       113 ~~g~t-~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~  188 (464)
                      ..|.| |||+|+..|+.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++++.++ +..+..|.++.+
T Consensus        75 ~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~~~  149 (156)
T 1bi7_B           75 PATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-RGSNHARIDAAE  149 (156)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred             CCCCcHHHHHHHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-CccCcCcCcccc
Confidence            88888 88888888888888888888877 4567788888888888888888888888888776 666777776655

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.9e-23  Score=163.89  Aligned_cols=126  Identities=31%  Similarity=0.499  Sum_probs=108.1

Q ss_pred             CCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCC
Q 038664           37 NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGN  116 (464)
Q Consensus        37 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~  116 (464)
                      +|+||||+|+..|+.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++.+++.          +.++..|.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~----------~~~~~~g~   69 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV----------NAKDKNGR   69 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT----------TCCCTTSC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC----------cccCCCCC
Confidence            478999999999999999999999888 6778888999999999999999999999888773          46778889


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 038664          117 TPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLS  174 (464)
Q Consensus       117 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~  174 (464)
                      ||||+|+..++.+++++|++.+++ .+..+..|.|||++|+..|+.+++++|+++|++
T Consensus        70 t~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           70 TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             cHHHHHHHcChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999988877 456778888888888888888888888887753

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=7.3e-24  Score=168.61  Aligned_cols=127  Identities=20%  Similarity=0.297  Sum_probs=104.2

Q ss_pred             ccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCC
Q 038664           34 MSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDE  113 (464)
Q Consensus        34 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  113 (464)
                      ....+.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|++.+++.          +.+|.
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~d~   78 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV----------NAVDA   78 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT----------TCCCT
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------CcCCC
Confidence            445677889999999999999999888887 6778888889999998888888999888887773          46778


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhc
Q 038664          114 EGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEK  172 (464)
Q Consensus       114 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~  172 (464)
                      .|.||||+|+..++.+++++|++.+++ .+..|..|.|||++|+..|+.+++++|++.|
T Consensus        79 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           79 IGFTPLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            888888888888888888888888877 4567788888888888888888888888754

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=8.1e-24  Score=166.08  Aligned_cols=126  Identities=41%  Similarity=0.630  Sum_probs=108.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhc
Q 038664          216 RDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQN  295 (464)
Q Consensus       216 ~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~  295 (464)
                      +|+||||+|++.|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHc
Confidence            47888888888888888888888888776 5777888899999888899999999888877 488888899999999999


Q ss_pred             CchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccc
Q 038664          296 GHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVN  347 (464)
Q Consensus       296 ~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d  347 (464)
                      ++.+++++|++.   +.+++.+|..|+||||+|+..++.+++++|+++ |+|
T Consensus        79 ~~~~~~~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAY  126 (126)
T ss_dssp             TCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCC
T ss_pred             ChHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCC
Confidence            999999999887   677888899999999999999999999999975 764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=7.6e-23  Score=162.69  Aligned_cols=123  Identities=23%  Similarity=0.326  Sum_probs=113.6

Q ss_pred             ccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC
Q 038664            4 VARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG   83 (464)
Q Consensus         4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g   83 (464)
                      ..++|+.|++.|+.+.++.+++. +.+++..+..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|
T Consensus        14 ~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~   91 (136)
T 2jab_A           14 LGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAFIG   91 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHhCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcC
Confidence            45789999999999999998876 458898999999999999999999999999999998 7889999999999999999


Q ss_pred             CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 038664           84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKD  138 (464)
Q Consensus        84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  138 (464)
                      +.+++++|++++++.          +.+|..|.||||+|+..++.+++++|++.|
T Consensus        92 ~~~~v~~Ll~~g~~~----------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           92 HLEIAEVLLKHGADV----------NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CHHHHHHHHHcCCCC----------cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999998874          478899999999999999999999999864

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=1.2e-23  Score=167.72  Aligned_cols=121  Identities=25%  Similarity=0.338  Sum_probs=107.5

Q ss_pred             cccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHH
Q 038664          246 ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPL  325 (464)
Q Consensus       246 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~L  325 (464)
                      .++..|+||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..++.+++++|++.   +.+++.+|..|+|||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L   80 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQH---KALVNTTGYQNDSPL   80 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCGGGCCHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCcccCcCCCCCCHH
Confidence            3677888999999999999999999988877 488889999999999999999999999887   678899999999999


Q ss_pred             HHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCchhhHH
Q 038664          326 HLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDI  371 (464)
Q Consensus       326 h~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~~  371 (464)
                      |+|++.++.+++++|++. |++++.+|..|+||+++|...+..+.+
T Consensus        81 ~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~l  125 (137)
T 3c5r_A           81 HDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTDDESMKSLL  125 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGCCCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhhccHHHHH
Confidence            999999999999999976 999999999999999999977666554

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=1.1e-23  Score=167.80  Aligned_cols=129  Identities=20%  Similarity=0.274  Sum_probs=110.6

Q ss_pred             cccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcC
Q 038664           33 DMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQD  112 (464)
Q Consensus        33 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  112 (464)
                      .++..|.||||+|+..|+.+++++|++.+++ ++.++..|.||||+|+..|+.+++++|++.+++.          +.++
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~----------~~~~   73 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV----------NTTG   73 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc----------cCcC
Confidence            5778899999999999999999999999988 7788999999999999999999999999988874          4678


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcC
Q 038664          113 EEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKL  173 (464)
Q Consensus       113 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~  173 (464)
                      ..|.||||+|+..++.+++++|++.+++ .+..|..|.||+++|+..+..++++++.+...
T Consensus        74 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           74 YQNDSPLHDAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             GGGCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            8899999999999999999999999888 46788899999999988888887777665443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=5.4e-23  Score=160.49  Aligned_cols=115  Identities=22%  Similarity=0.216  Sum_probs=100.8

Q ss_pred             cCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHH
Q 038664          248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHL  327 (464)
Q Consensus       248 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~  327 (464)
                      +..|.||||.|+..|+.+++++|++.+++ ++.+|..|+||||+|+..++.+++++|++.   +.+++.+|..|+||||+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~d~~g~tpL~~   79 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLK---GADINAPDKHHITPLLS   79 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTT---TCCTTCCCTTSCCHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCcCCCCCCCHHHH
Confidence            45677899999999999999999998887 588899999999999999999999999987   67889999999999999


Q ss_pred             HHHcCCchHHHHHHhccccccccccccCCChHHhhccCch
Q 038664          328 AAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLH  367 (464)
Q Consensus       328 A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~  367 (464)
                      |+..++.+++++|+++ |++++.+|..|+||+++|...+.
T Consensus        80 A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~  118 (123)
T 3aaa_C           80 AVYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEATDNQAI  118 (123)
T ss_dssp             HHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCCHHH
T ss_pred             HHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHhCCHHH
Confidence            9999999999999976 99999999999999999974433

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=1e-22  Score=170.88  Aligned_cols=139  Identities=17%  Similarity=0.172  Sum_probs=106.6

Q ss_pred             cCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcC-C
Q 038664           35 SQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQD-E  113 (464)
Q Consensus        35 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~-~  113 (464)
                      +..|.||||+|+..|+.+++++|++ +.+ ++.+|..|.||||+|+..|+.+++++|++++++.+          .++ .
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~  108 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD----------HRDMR  108 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCSS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------cCCCC
Confidence            4567888888888888888888888 666 67788888888888888888888888888887743          455 7


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHc
Q 038664          114 EGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIK  193 (464)
Q Consensus       114 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~  193 (464)
                      .|.||||+|+..|+.+++++|++.+++ ++..|..|.|||++|+..++.                  ..+.++|++|+..
T Consensus       109 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~  169 (183)
T 3deo_A          109 GGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRI  169 (183)
T ss_dssp             SSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHH
T ss_pred             CCCCHHHHHHhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHc
Confidence            788888888888888888888888877 456778888888888764311                  2345677777777


Q ss_pred             CCHHHHHHHHH
Q 038664          194 SNFVVMAKILE  204 (464)
Q Consensus       194 ~~~~~~~~ll~  204 (464)
                      |..++++.|.+
T Consensus       170 ~~~~i~~~L~~  180 (183)
T 3deo_A          170 GLEKVINVLEG  180 (183)
T ss_dssp             HHHHHHHHHHT
T ss_pred             CHHHHHHHHHH
Confidence            77777666654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=2.4e-22  Score=181.75  Aligned_cols=144  Identities=15%  Similarity=0.134  Sum_probs=113.5

Q ss_pred             ccCCCCchhHHHHhcCCHHHHHHHHHhCCccccc------cccCCCCHHHHHHHh---CCHHHHHHHhcccCCCCCCcch
Q 038664           34 MSQNRDTALHIAARFGHKNVVMEILELRPDLVSV------ENHKSETPMHVAARA---GNFGVAKIFMRPHGNGNNTGTF  104 (464)
Q Consensus        34 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~------~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~  104 (464)
                      ......++||.|+..|+.+.++.|++.+++ ++.      .+..|.||||+|+..   |+.+++++|++.+++.      
T Consensus       147 ~~~~~~~~L~~A~~~g~~~~v~~ll~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv------  219 (301)
T 2b0o_E          147 RCTPEPQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL------  219 (301)
T ss_dssp             CCC-CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT------
T ss_pred             ccCchHHHHhhhhhccCHHHHHHHHhcCCc-ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC------
Confidence            344566889999999999999999988888 444      578888999999987   7889999999988873      


Q ss_pred             HHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCC
Q 038664          105 DDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDL  184 (464)
Q Consensus       105 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~  184 (464)
                          +.+|..|.||||+|+..|+.+++++|++.|++ ++..|..|.|||++|+..|+.+++++|++.+.+       .+.
T Consensus       220 ----n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~  287 (301)
T 2b0o_E          220 ----DAKAADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFA  287 (301)
T ss_dssp             ----TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTS
T ss_pred             ----CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCC
Confidence                46788899999999999999999999998888 467888899999999999999999999988876       367


Q ss_pred             CHHHHHHHcCCH
Q 038664          185 TLLHIAIIKSNF  196 (464)
Q Consensus       185 ~~l~~a~~~~~~  196 (464)
                      ||||+|+..|+.
T Consensus       288 tpLh~A~~~g~~  299 (301)
T 2b0o_E          288 FPLHVDYSWVIS  299 (301)
T ss_dssp             SCCC--------
T ss_pred             ChhHHHHhcCCc
Confidence            899999887754

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=1.4e-23  Score=184.51  Aligned_cols=141  Identities=17%  Similarity=0.182  Sum_probs=79.6

Q ss_pred             cCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCC
Q 038664           70 HKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAG  149 (464)
Q Consensus        70 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g  149 (464)
                      ..|.||||+|+..|+.+++++|++ +++          ++.+|..|.||||+|+..|+.+++++|++.++++....+..|
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~----------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g  111 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRD----------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG  111 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCC----------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCC----------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCC
Confidence            345566666666666666666655 443          234555556666666666666666666665555322222555


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCC
Q 038664          150 QSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGH  229 (464)
Q Consensus       150 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~  229 (464)
                      .||||+|+..|+.+++++|++++.++ +..+..|.||||+|+..+                  ....+.||||+|+..|+
T Consensus       112 ~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~------------------~~~~~~~~l~~a~~~g~  172 (244)
T 3ui2_A          112 LTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREIL------------------KTTPKGNPMQFGRRIGL  172 (244)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHH------------------TTCCCSSHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHH------------------hccCCCCHHHHHHHcCh
Confidence            66666666666666666666655554 555556666666665311                  12345666666666666


Q ss_pred             HHHHHHHhhcC
Q 038664          230 FEIACRLSDED  240 (464)
Q Consensus       230 ~~~v~~Ll~~~  240 (464)
                      .+++++|++.+
T Consensus       173 ~~iv~~L~~~~  183 (244)
T 3ui2_A          173 EKVINVLEGQV  183 (244)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            66666666643

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=4.9e-22  Score=166.69  Aligned_cols=136  Identities=19%  Similarity=0.229  Sum_probs=122.0

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccc-cCCCCHHHHHHHhC
Q 038664            5 ARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVEN-HKSETPMHVAARAG   83 (464)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~g   83 (464)
                      .++||.|++.|+.+.++.+++  +.+++..+..|.||||+|+..|+.+++++|+++|++ ++..+ ..|+||||+|+..|
T Consensus        45 ~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~~~~  121 (183)
T 3deo_A           45 ETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAGYV  121 (183)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSSCCHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHHhcC
Confidence            578999999999999999998  568999999999999999999999999999999999 55566 89999999999999


Q ss_pred             CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHH
Q 038664           84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTH  163 (464)
Q Consensus        84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~  163 (464)
                      +.+++++|++++++.          +.+|..|.||||+|+..++                  ...+.+++++|+..|+.+
T Consensus       122 ~~~~v~~Ll~~ga~~----------~~~d~~g~tpl~~A~~~~~------------------~~~~~~~l~~a~~~~~~~  173 (183)
T 3deo_A          122 RPEVVEALVELGADI----------EVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEK  173 (183)
T ss_dssp             CHHHHHHHHHHTCCT----------TCCCTTSCCHHHHHHHHHH------------------TCCCCSHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCC----------cCCCCCCCCHHHHHHHhcc------------------CcccccHHHHHHHcCHHH
Confidence            999999999999884          4789999999999986432                  235689999999999999


Q ss_pred             HHHHHHHh
Q 038664          164 IACCIIKE  171 (464)
Q Consensus       164 ~~~~Ll~~  171 (464)
                      ++++|.++
T Consensus       174 i~~~L~~~  181 (183)
T 3deo_A          174 VINVLEGQ  181 (183)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            99999764

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=7.4e-22  Score=178.54  Aligned_cols=140  Identities=14%  Similarity=0.152  Sum_probs=110.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhhcCCCcccc-----ccCCCCCcccccccC---CcHHHHHHHHHHCCCcccccccCCCch
Q 038664          217 DRNPLHYAAALGHFEIACRLSDEDDTLAYE-----RDCNGQSPLHLASEN---GKLSLLKRLLHSYPDSIEFLDKKNRNI  288 (464)
Q Consensus       217 g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~  288 (464)
                      ..++|+.|+..|+.+.++.|++.+.+++..     .+..|.||||+|+..   |+.+++++|++++++ ++.+|.+|+||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G~Tp  229 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTA  229 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTCCCH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCCCCH
Confidence            345688888888888888888888776632     577788888888886   888888888888887 58888888999


Q ss_pred             hHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCch
Q 038664          289 LHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLH  367 (464)
Q Consensus       289 L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~  367 (464)
                      ||+|+..|+.+++++|++.   +++++.+|..|+||||+|+..++.+++++|++. |++      .|.|||++|...++
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~---gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~-ga~------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKG---RALVGTVNEAGETALDIARKKHHKECEELLEQA-QAG------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHT---TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHH-HHH------TTSSCCC-------
T ss_pred             HHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh-cCC------CCCChhHHHHhcCC
Confidence            9999998888998888887   678888888899999999998888888888865 654      67889988886655

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=5.8e-22  Score=174.17  Aligned_cols=143  Identities=17%  Similarity=0.159  Sum_probs=118.0

Q ss_pred             ccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcC-
Q 038664           34 MSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQD-  112 (464)
Q Consensus        34 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~-  112 (464)
                      .+..|.||||+|+..|+.++|++|++ +.+ ++.+|..|.||||+|+..|+.+++++|++++++.+          .++ 
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~----------~~~~  108 (244)
T 3ui2_A           41 VVSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD----------HRDM  108 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCS
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC----------cCCC
Confidence            44567899999999999999999998 776 77888889999999999999999999999888743          455 


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHH
Q 038664          113 EEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAII  192 (464)
Q Consensus       113 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~  192 (464)
                      ..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..+..                  ..+.+||++|+.
T Consensus       109 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~~~------------------~~~~~~l~~a~~  169 (244)
T 3ui2_A          109 RGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKT------------------TPKGNPMQFGRR  169 (244)
T ss_dssp             SSCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHHTT------------------CCCSSHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHHhc------------------cCCCCHHHHHHH
Confidence            7789999999999999999999999888 467788899999998864322                  235789999999


Q ss_pred             cCCHHHHHHHHHhCc
Q 038664          193 KSNFVVMAKILEAKR  207 (464)
Q Consensus       193 ~~~~~~~~~ll~~~~  207 (464)
                      .|+.++++.|++...
T Consensus       170 ~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          170 IGLEKVINVLEGQVF  184 (244)
T ss_dssp             HHHHHHHHHHHHHHE
T ss_pred             cChHHHHHHHHHhcc
Confidence            999999999988643

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=2.3e-22  Score=156.88  Aligned_cols=111  Identities=17%  Similarity=0.193  Sum_probs=80.6

Q ss_pred             cCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCC
Q 038664           35 SQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEE  114 (464)
Q Consensus        35 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  114 (464)
                      +..|.||||+|+..|+.+++++|++.+++ ++.++..|.||||+|+..|+.+++++|++.+++.          +.+|..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~d~~   72 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI----------NAPDKH   72 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT----------TCCCTT
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC----------CcCCCC
Confidence            34567777777777777777777777776 6667777777777777777777777777777663          356777


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHH
Q 038664          115 GNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAI  157 (464)
Q Consensus       115 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~  157 (464)
                      |.||||+|+..++.+++++|++.+++ ++..+..|.||+++|.
T Consensus        73 g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           73 HITPLLSAVYEGHVSCVKLLLSKGAD-KTVKGPDGLTAFEATD  114 (123)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHhC
Confidence            77777777777777777777777766 4566777777777773

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=4.5e-23  Score=178.93  Aligned_cols=138  Identities=18%  Similarity=0.188  Sum_probs=74.5

Q ss_pred             hhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHH-CCCcccccccCCCchhH
Q 038664          212 VLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHS-YPDSIEFLDKKNRNILH  290 (464)
Q Consensus       212 ~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~L~  290 (464)
                      ..+..|.||||+|+..|+.+++++|++.+.+++ .++..|+||||+|+..|+.+++++|++. +.+ ++.+|..|+||||
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~tpL~  145 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDTALH  145 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCCHHH
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCCHHH
Confidence            345556666666666666666666666665555 4555666666666666666666666665 333 4556666666666


Q ss_pred             HHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccC
Q 038664          291 LAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKK  355 (464)
Q Consensus       291 ~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g  355 (464)
                      +|+..|+.+++++|++.   +++++.+|..|+||||+|+..++.++++.|+.. +++.+.+|.+|
T Consensus       146 ~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~~~~~  206 (222)
T 3ehr_A          146 AAAWKGYADIVQLLLAK---GARTDLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLSNAED  206 (222)
T ss_dssp             HHHHHTCHHHHHHHHHH---TCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             HHHHcCCHHHHHHHHHc---CCCCccccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhccchhh
Confidence            66666666666666555   455566666666666666666666666666543 55555554433

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=1e-21  Score=175.64  Aligned_cols=124  Identities=17%  Similarity=0.174  Sum_probs=109.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHhhcCCCccc-----cccCCCCCcccccccC---CcHHHHHHHHHHCCCcccccccCCCchh
Q 038664          218 RNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASEN---GKLSLLKRLLHSYPDSIEFLDKKNRNIL  289 (464)
Q Consensus       218 ~t~L~~a~~~~~~~~v~~Ll~~~~~~~~-----~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~L  289 (464)
                      .++|+.|+..|+.+.++.+++.|.+...     ..+..|.||||+|+..   |+.+++++|+++|++ ++.+|..|+|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHH
Confidence            3688899999999999999988887542     2377899999999998   899999999999988 599999999999


Q ss_pred             HHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhcccc
Q 038664          290 HLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRV  346 (464)
Q Consensus       290 ~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~  346 (464)
                      |+|+..|+.+++++|++.   |++++.+|..|+||||+|+..|+.+++++|++. |+
T Consensus       210 h~A~~~g~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga  262 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRG---KASIEIANESGETPLDIAKRLKHEHCEELLTQA-LS  262 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HT
T ss_pred             HHHHHcCCHHHHHHHHHc---CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence            999999999999999986   788999999999999999999999999999975 55

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=5e-22  Score=172.32  Aligned_cols=129  Identities=19%  Similarity=0.189  Sum_probs=100.1

Q ss_pred             cCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcc-cCCCCCCcchHHHHhhcCC
Q 038664           35 SQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRP-HGNGNNTGTFDDILRKQDE  113 (464)
Q Consensus        35 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~  113 (464)
                      +..|.||||+||..|+.++|++|++.+++ ++.+|..|.||||+|+..|+.+++++|++. +++.          +.+|.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~----------~~~d~  138 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL----------NQQNK  138 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC----------CCCCT
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc----------cccCC
Confidence            45678888888888888888888888887 677888888888888888888888888887 6663          46788


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcC
Q 038664          114 EGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSV  175 (464)
Q Consensus       114 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~  175 (464)
                      .|.||||+|+..|+.+++++|++.|++ .+..+..|.|||++|+..++.++++.+++.+...
T Consensus       139 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          139 LGDTALHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence            888888888888888888888888877 4577888888888888888888888888776654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=1.5e-20  Score=138.54  Aligned_cols=92  Identities=35%  Similarity=0.552  Sum_probs=79.9

Q ss_pred             CCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCC
Q 038664           37 NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGN  116 (464)
Q Consensus        37 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~  116 (464)
                      +|+||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.+++.          +.+|..|.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~----------~~~d~~g~   69 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV----------NAKDKNGR   69 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCCTTSC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------CccCCCCC
Confidence            478999999999999999999999888 7888889999999999999999999999988874          46788899


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCC
Q 038664          117 TPLHNAVRKCDGKMAFTMIRKDP  139 (464)
Q Consensus       117 t~L~~A~~~~~~~~~~~Ll~~~~  139 (464)
                      ||||+|+..|+.+++++|++.|+
T Consensus        70 t~l~~A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           70 TPLHLAARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999999999988875

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.83  E-value=9.4e-21  Score=175.03  Aligned_cols=147  Identities=19%  Similarity=0.212  Sum_probs=115.4

Q ss_pred             cCCCCcHHHHHHHc-CCHHHHHHHhhcCCCcccccc--CCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhH
Q 038664          214 DKRDRNPLHYAAAL-GHFEIACRLSDEDDTLAYERD--CNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILH  290 (464)
Q Consensus       214 ~~~g~t~L~~a~~~-~~~~~v~~Ll~~~~~~~~~~~--~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~  290 (464)
                      +..+.|+||.|+.. ++.+++++|++.|++++. .+  ..|.||||+|+..|+.+++++|++++++ ++..|..|+||||
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~-~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpLh  273 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNW-VNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLH  273 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTC-CCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCc-cccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHH
Confidence            34566899999999 999999999999998884 55  7899999999999999999999999988 5999999999999


Q ss_pred             HHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhcc--ccccccccccCCChHHhhccC
Q 038664          291 LAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNM--RVNIRATNEKKQTALAIVQPS  365 (464)
Q Consensus       291 ~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~--~~d~~~~n~~g~t~l~~a~~~  365 (464)
                      +|+..|+.+++++|++.   +++++.+|..|+||||+|+..++.+++++|+...  +.+....+..+.|+++++...
T Consensus       274 ~A~~~g~~~~v~~LL~~---Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          274 HATILGHTGLACLFLKR---GADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHcCcHHHHHHHHHC---cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            99999999999999988   7889999999999999999999999999998652  344556678889999988843

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=1.7e-19  Score=161.13  Aligned_cols=124  Identities=15%  Similarity=0.181  Sum_probs=72.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCcC-----cCCCCCCCCCHHHHHHHc---CCHHHHHHHHHhCchhhhhhcCCCCcHHH
Q 038664          151 SPLSLAIDAGLTHIACCIIKEKLSV-----LDHRGPNDLTLLHIAIIK---SNFVVMAKILEAKRDLINVLDKRDRNPLH  222 (464)
Q Consensus       151 t~l~~A~~~g~~~~~~~Ll~~~~~~-----~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~g~t~L~  222 (464)
                      ++|+.|+..|+.+.+..+++.+.+.     ++..+..|.||||+|+..   ++.+++++|++.+++ ++..|..|+||||
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh  210 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHH
Confidence            4555555555555555555555443     123345556666666665   556666666666555 5555666666666


Q ss_pred             HHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCC
Q 038664          223 YAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPD  276 (464)
Q Consensus       223 ~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  276 (464)
                      +|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++++++
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASIE-IANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCC-CccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            6666666666666666666555 4555666666666666666666666666554

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.82  E-value=2.1e-20  Score=137.68  Aligned_cols=93  Identities=44%  Similarity=0.669  Sum_probs=74.6

Q ss_pred             CCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHH
Q 038664          250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAA  329 (464)
Q Consensus       250 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~  329 (464)
                      +|+||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..++.+++++|++.   +++++.+|..|+||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAA   76 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCccCCCCCCHHHHHH
Confidence            367888888888888888888888777 478888888888888888888888888876   6778888888888888888


Q ss_pred             HcCCchHHHHHHhccccc
Q 038664          330 INNHFNIVLILARNMRVN  347 (464)
Q Consensus       330 ~~~~~~~v~~Ll~~~~~d  347 (464)
                      +.|+.+++++|++. |++
T Consensus        77 ~~~~~~~~~~Ll~~-ga~   93 (93)
T 1n0q_A           77 RNGHLEVVKLLLEA-GAY   93 (93)
T ss_dssp             HTTCHHHHHHHHHT-TCC
T ss_pred             HcCCHHHHHHHHHc-CCC
Confidence            88888888888865 653

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.82  E-value=9.1e-21  Score=145.88  Aligned_cols=108  Identities=33%  Similarity=0.474  Sum_probs=87.2

Q ss_pred             ccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHH
Q 038664          247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLH  326 (464)
Q Consensus       247 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh  326 (464)
                      +|..|+||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..++.+++++|++.   +++++.+|..|+||||
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~d~~g~tpl~   80 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAK---GADVNARSKDGNTPEH   80 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTT---TCCTTCCCTTCCCTTH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc---CCCCcccCCCCCCHHH
Confidence            566777888888888888888888877776 477788888888888888888888888876   6778888888889999


Q ss_pred             HHHHcCCchHHHHHHhccccccccccccCCChH
Q 038664          327 LAAINNHFNIVLILARNMRVNIRATNEKKQTAL  359 (464)
Q Consensus       327 ~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l  359 (464)
                      +|+..++.+++++|+++ |+|++.++..|.||-
T Consensus        81 ~A~~~~~~~~~~~Ll~~-ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAK-GADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHTTTCHHHHHHHHTT-SSSHHHHSCCCC---
T ss_pred             HHHHCCCHHHHHHHHHc-CCCCCcCCccccccc
Confidence            99988888899888865 888888888888874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=5.2e-20  Score=170.05  Aligned_cols=149  Identities=21%  Similarity=0.221  Sum_probs=116.9

Q ss_pred             CCCCCHHHHHHHc-CCHHHHHHHHHhCchhhhhhc--CCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccc
Q 038664          181 PNDLTLLHIAIIK-SNFVVMAKILEAKRDLINVLD--KRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHL  257 (464)
Q Consensus       181 ~~~~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~--~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  257 (464)
                      ..+.++||.|+.. ++.++++.|++.+.+ ++..+  ..|.||||+|+..|+.+++++|+++|++++ ..|..|+||||+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn-~~d~~G~TpLh~  274 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN-QADSAGRGPLHH  274 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHH
Confidence            3455799999999 999999999999987 78777  899999999999999999999999999988 689999999999


Q ss_pred             cccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcC
Q 038664          258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINN  332 (464)
Q Consensus       258 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~  332 (464)
                      |+..|+.+++++|++++++ ++..|..|+||||+|+..++.+++++|+............+..+.|+++++....
T Consensus       275 A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          275 ATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             HHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            9999999999999999988 5999999999999999999999999999876555555566777889998877654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=1.2e-19  Score=139.61  Aligned_cols=108  Identities=24%  Similarity=0.347  Sum_probs=94.6

Q ss_pred             cccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcC
Q 038664           33 DMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQD  112 (464)
Q Consensus        33 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  112 (464)
                      .+|.+|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|++.+++.          +.+|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~----------~~~d   72 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV----------NARS   72 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT----------TCCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC----------cccC
Confidence            3678899999999999999999999999988 7888999999999999999999999999998874          4778


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcH
Q 038664          113 EEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSP  152 (464)
Q Consensus       113 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  152 (464)
                      ..|.||||+|+..++.+++++|++.|+++ +..+..+.+|
T Consensus        73 ~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~  111 (115)
T 2l6b_A           73 KDGNTPEHLAKKNGHHEIVKLLDAKGADV-NARSWGSSHH  111 (115)
T ss_dssp             TTCCCTTHHHHTTTCHHHHHHHHTTSSSH-HHHSCCCC--
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCcccccc
Confidence            89999999999999999999999999884 5667777776

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.73  E-value=1.1e-17  Score=127.05  Aligned_cols=93  Identities=25%  Similarity=0.371  Sum_probs=82.4

Q ss_pred             cccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhh
Q 038664           31 ILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRK  110 (464)
Q Consensus        31 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  110 (464)
                      ....+.+|.|+||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++++++.          +.
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~----------~~   85 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV----------XA   85 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----------TC
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc----------cc
Confidence            336788999999999999999999999999988 7888999999999999999999999999998874          47


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHH
Q 038664          111 QDEEGNTPLHNAVRKCDGKMAFTM  134 (464)
Q Consensus       111 ~~~~g~t~L~~A~~~~~~~~~~~L  134 (464)
                      +|..|.||||+|+..|+.+++++|
T Consensus        86 ~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           86 QDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cccCCCcHHHHHHHcCCHHHHHHh
Confidence            889999999999999999999876

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.65  E-value=9.5e-16  Score=116.37  Aligned_cols=88  Identities=32%  Similarity=0.443  Sum_probs=81.3

Q ss_pred             CcccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHH
Q 038664            2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAAR   81 (464)
Q Consensus         2 ~~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~   81 (464)
                      +...++||.|+..|+.+.++.+++. +.+++..+..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+.
T Consensus        22 ~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~   99 (110)
T 2zgd_A           22 SDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISID   99 (110)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             CccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCcHHHHHHH
Confidence            3456799999999999999999876 558998899999999999999999999999999998 78899999999999999


Q ss_pred             hCCHHHHHHH
Q 038664           82 AGNFGVAKIF   91 (464)
Q Consensus        82 ~g~~~~v~~L   91 (464)
                      .|+.+++++|
T Consensus       100 ~~~~~~~~~L  109 (110)
T 2zgd_A          100 NGNEDLAEIL  109 (110)
T ss_dssp             HTCHHHHHHH
T ss_pred             cCCHHHHHHh
Confidence            9999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	464
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-32
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-30
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-22
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-19
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-18
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-17
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-16
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-14
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-15
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-14
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-14
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-15
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-14
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	8e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.003
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (310), Expect = 7e-32
 Identities = 82/320 (25%), Positives = 127/320 (39%), Gaps = 20/320 (6%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN 99
           T LH+A+  GH  +V  +L+      +V N K ETP+H+AARAG+  VAK  ++     N
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 100 NTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDA 159
                      + ++  TPLH A R     M   ++  +                 A + 
Sbjct: 61  ----------AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREG 110

Query: 160 GLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRN 219
                    + EK +          T LH+A       V   +LE      N   K    
Sbjct: 111 --HVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLT 167

Query: 220 PLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIE 279
           PLH A    + +I   L     +  +    NG +PLH+A++  ++ + + LL     +  
Sbjct: 168 PLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA 226

Query: 280 FLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLI 339
               +    LHLAAQ GHA +V  +      +   N  +  G TPLHL A   H  +  +
Sbjct: 227 E-SVQGVTPLHLAAQEGHAEMVALL---LSKQANGNLGNKSGLTPLHLVAQEGHVPVADV 282

Query: 340 LARNMRVNIRATNEKKQTAL 359
           L ++  V + AT     T L
Sbjct: 283 LIKH-GVMVDATTRMGYTPL 301

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (300), Expect = 2e-30
 Identities = 88/377 (23%), Positives = 148/377 (39%), Gaps = 34/377 (9%)

Query: 8   LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSV 67
           L  A   G    V+   +  G      +   +T LH+AAR GH  V   +L+ +   V+ 
Sbjct: 4   LHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNA 61

Query: 68  ENHKSETPMHVAARAGNFGVAKI-----------------------FMRPHGNGNNTGTF 104
           +    +TP+H AAR G+  + K+                                     
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 105 DDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHI 164
           +       ++G TPLH A +    ++A  ++ +D        K G +PL +A+      I
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDI 180

Query: 165 ACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYA 224
              ++    S       N  T LHI   K N V +A+ L       N    +   PLH A
Sbjct: 181 VKLLLPRGGSP-HSPAWNGYTPLHI-AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA 238

Query: 225 AALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKK 284
           A  GH E+   L  +        + +G +PLHL ++ G + +   L+      ++   + 
Sbjct: 239 AQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRM 296

Query: 285 NRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNM 344
               LH+A+  G+  +V F+    + +  +N+    G +PLH AA   H +IV +L +N 
Sbjct: 297 GYTPLHVASHYGNIKLVKFL---LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN- 352

Query: 345 RVNIRATNEKKQTALAI 361
             +    +    T LAI
Sbjct: 353 GASPNEVSSDGTTPLAI 369

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (204), Expect = 6e-18
 Identities = 51/208 (24%), Positives = 83/208 (39%), Gaps = 38/208 (18%)

Query: 184 LTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTL 243
           LT LH+A    +  ++  +L+      NV + +   PLH AA  GH E+A  L      +
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 59

Query: 244 AYERDCNGQSPLHLASENGKLSLLKRLLHSYPD--------------------------- 276
              +  + Q+PLH A+  G  +++K LL +  +                           
Sbjct: 60  N-AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 118

Query: 277 -----SIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAIN 331
                S   + KK    LH+AA+ G   V      L E +   N++   G TPLH+A  +
Sbjct: 119 LEKEASQACMTKKGFTPLHVAAKYGKVRVAEL---LLERDAHPNAAGKNGLTPLHVAVHH 175

Query: 332 NHFNIVLILARNMRVNIRATNEKKQTAL 359
           N+ +IV +L      +  +      T L
Sbjct: 176 NNLDIVKLLLPR-GGSPHSPAWNGYTPL 202

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.0 bits (235), Expect = 2e-22
 Identities = 45/268 (16%), Positives = 91/268 (33%), Gaps = 35/268 (13%)

Query: 39  DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNG 98
           +  L  A +    ++V ++LE   ++   E     TP+H A +     + ++ +R   + 
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 99  NNTGTFDDILR-----------------------KQDEEGNTPLHNAVRKCDGKMAFTMI 135
                                             + D  G T    A      K    + 
Sbjct: 66  VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY 125

Query: 136 RKDP---------ELICYINKAGQSPLSLAIDAGLTHIACCIIKEK---LSVLDHRGPND 183
           ++           E    + K G + L  A + G   +   ++ E    ++  D+ G N 
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185

Query: 184 LTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTL 243
           L    ++   S+   +  +L      +NV  +R + PL  A    H  +  RL +++   
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 245

Query: 244 AYERDCNGQSPLHLASENGKLSLLKRLL 271
             + D +G++ L LA E     + + L 
Sbjct: 246 INDTDSDGKTALLLAVELKLKKIAELLC 273

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (212), Expect = 2e-19
 Identities = 55/256 (21%), Positives = 88/256 (34%), Gaps = 12/256 (4%)

Query: 114 EGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKL 173
           E N  L  AV+  D  +   ++     +     + G +PL  A+      I   +++   
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 174 SVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIA 233
             +  +       L  AI     V + K+  +K   +N  D         AA  G  +  
Sbjct: 64  DPVLRKKNGATPFLLAAIA--GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 234 CRL---------SDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKK 284
             L           +           G + L  A+E G + +LK LL      +   D  
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181

Query: 285 NRNILHLAAQNGHANVVVFISK-LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARN 343
            RN L  A  +   + V  I+  L +    +N     G TPL LA    H  +V  L   
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241

Query: 344 MRVNIRATNEKKQTAL 359
             + I  T+   +TAL
Sbjct: 242 EHIEINDTDSDGKTAL 257

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 1e-11
 Identities = 43/199 (21%), Positives = 71/199 (35%), Gaps = 9/199 (4%)

Query: 182 NDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDD 241
            D  LL  A+   +  ++ ++LE   ++    ++    PLH A  +   +I   L     
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDI-VELLLRHG 62

Query: 242 TLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV 301
                R  NG +P  LA+  G + LLK    S    +   D         AA  G    +
Sbjct: 63  ADPVLRKKNGATPFLLAAIAGSVKLLKLF-LSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 302 VFISKLPEIEDM-------INSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEK 354
            F+ K     ++              G T L  AA   H  ++ IL   M  ++ A +  
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181

Query: 355 KQTALAIVQPSLHQNDILE 373
            + AL     S   +D+  
Sbjct: 182 GRNALIHALLSSDDSDVEA 200

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 2e-08
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 8/138 (5%)

Query: 34  MSQNRDTALHIAARFGHKNVVMEILELRP-DLVSVENHKSETPMHVAARAGNFGVAKIFM 92
           + +   TAL  AA  GH  V+  +L+    D+ + +N      +H    + +  V  I  
Sbjct: 144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH 203

Query: 93  RPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSP 152
               +G +       +  + E G TPL  AV K    +   ++ ++   I   +  G++ 
Sbjct: 204 LLLDHGAD-------VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 256

Query: 153 LSLAIDAGLTHIACCIIK 170
           L LA++  L  IA  + K
Sbjct: 257 LLLAVELKLKKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 4e-05
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 36  QNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPH 95
           +   T L +A    H  +V  +LE     ++  +   +T + +A       +A++  +  
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK-R 275

Query: 96  G 96
           G
Sbjct: 276 G 276

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 83.8 bits (206), Expect = 2e-18
 Identities = 30/282 (10%), Positives = 65/282 (23%), Gaps = 32/282 (11%)

Query: 35  SQNRDTALHIAARFGHKNVV--MEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFM 92
               +    +AA  G  + +  + +L    ++V V   ++     +AA  G+  V     
Sbjct: 87  GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC 146

Query: 93  RPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSP 152
                                E       A       +   +    P     + +A    
Sbjct: 147 ELAPTEIM--------AMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY 198

Query: 153 LSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINV 212
                 A             ++ L                     V   I      L  +
Sbjct: 199 ------AFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEM 252

Query: 213 LDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLH 272
                 +    +   G F++              +       L   ++   L  ++ LL 
Sbjct: 253 -----HDAFKLSNPDGVFDLV-------TKSECLQGFYMLRNLIRRNDEVLLDDIRFLLS 300

Query: 273 SYPD----SIEFLDKKNRNILHLAAQNGHANVVVFISKLPEI 310
                       +      +L LA + G+      +  +P +
Sbjct: 301 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSV 342

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 64.5 bits (156), Expect = 6e-12
 Identities = 34/199 (17%), Positives = 56/199 (28%), Gaps = 38/199 (19%)

Query: 170 KEKLSVLDHRGPNDLTLLHIAIIKSNFVV--MAKILEAKRDLINVLDKRDRNPLHYAAAL 227
           K+  S    +G     +  +A I           +L    +++ V+   +      AA  
Sbjct: 77  KQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN 136

Query: 228 GHFEIACRL-SDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDS--------- 277
           GH  +  RL       +             LA+ENG L +L RL    P           
Sbjct: 137 GHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAEN 196

Query: 278 ----------------IEFLDKKNRNI---LHLAAQNGHANVVVFISKLPEIEDMINSSD 318
                           I FL      +        + G   V  FI           +  
Sbjct: 197 YYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFI-------ARHVNRL 249

Query: 319 LEGNTPLHLAAINNHFNIV 337
            E +    L+  +  F++V
Sbjct: 250 KEMHDAFKLSNPDGVFDLV 268

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 62.2 bits (150), Expect = 3e-11
 Identities = 19/162 (11%), Positives = 47/162 (29%), Gaps = 12/162 (7%)

Query: 210 INVLDKRDRNP-LHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLK 268
           I+ ++  + +P L     +    +       ++             + L        + +
Sbjct: 4   IHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQ 63

Query: 269 RLLHSYPDSIEFL----------DKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSD 318
            L   Y                   K+  I  +AA  G ++ +  +  L   ++++    
Sbjct: 64  LLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQ 123

Query: 319 LEGNTPLHLAAINNHFNIV-LILARNMRVNIRATNEKKQTAL 359
            E      LAA N H +++  +        +     +   A 
Sbjct: 124 AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF 165

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 82.5 bits (202), Expect = 3e-18
 Identities = 47/304 (15%), Positives = 101/304 (33%), Gaps = 29/304 (9%)

Query: 39  DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNG 98
           ++ + +         + E +  R  +  ++   + T +H  A   +   ++  +  H   
Sbjct: 1   ESPIKLHTEAAGSYAITEPI-TRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIV-HEAK 58

Query: 99  NNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAID 158
                  D+    D + NTPL  AV     ++   +++   +   Y              
Sbjct: 59  ECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY-------------- 103

Query: 159 AGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDR 218
               + +      + +     G     L    +      +    + A   + +   +   
Sbjct: 104 ----NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV 159

Query: 219 NPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSI 278
                    G        + +D          G++ LH A++   + ++K L+     + 
Sbjct: 160 ASAKLLVEKGAKVDYDGAARKD-----SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK 214

Query: 279 EFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVL 338
           +  D+  +  + LAAQ G   VV++   L +    + + D   +T   LA  NNH NIV 
Sbjct: 215 DKQDEDGKTPIMLAAQEGRIEVVMY---LIQQGASVEAVDATDHTARQLAQANNHHNIVD 271

Query: 339 ILAR 342
           I  R
Sbjct: 272 IFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.3 bits (116), Expect = 4e-07
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 1/86 (1%)

Query: 8   LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSV 67
           L  A +  +   V+      G+      ++  T + +AA+ G   VVM +++     V  
Sbjct: 191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEA 249

Query: 68  ENHKSETPMHVAARAGNFGVAKIFMR 93
            +    T   +A    +  +  IF R
Sbjct: 250 VDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 24/197 (12%), Positives = 52/197 (26%), Gaps = 43/197 (21%)

Query: 47  RFGHKNVVMEILEL--RPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTF 104
                 +++ +L        +   +    T + + A                 G      
Sbjct: 116 ANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD 175

Query: 105 DDI-LRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTH 163
                  +  +G T LH A +  +  +   ++ +        ++ G++P+ LA   G   
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE 235

Query: 164 IACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHY 223
           +   +I+        +G +                           +  +D  D      
Sbjct: 236 VVMYLIQ--------QGAS---------------------------VEAVDATDHTARQL 260

Query: 224 AAALGHFEIA-----CR 235
           A A  H  I      CR
Sbjct: 261 AQANNHHNIVDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 44/227 (19%), Positives = 77/227 (33%), Gaps = 19/227 (8%)

Query: 150 QSPLSLAIDA-GLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRD 208
           +SP+ L  +A G   I   I +E ++++D R  ++ T+LH     S+      ++  +  
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPR--HNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 209 L-------INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASEN 261
                   +N +D  +  PL  A       +   L                +    A+  
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR 118

Query: 262 GK-LSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDM------- 313
              + +           IE LD+     L + A N   + V     L E           
Sbjct: 119 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 178

Query: 314 -INSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
             +S   +G T LH AA  ++  IV  L      N    +E  +T +
Sbjct: 179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI 225

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.7 bits (195), Expect = 3e-17
 Identities = 36/269 (13%), Positives = 86/269 (31%), Gaps = 23/269 (8%)

Query: 109 RKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCI 168
            +Q  +    L   +     +M  ++             + Q    ++ D+ L  +    
Sbjct: 33  NEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAF 92

Query: 169 IKEKLSV---LDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAA 225
              +L++   +D  G    T LH     +N  ++  +++   +     D    + L  A 
Sbjct: 93  PNTQLNLNIPVDEHG---NTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAV 148

Query: 226 ALGHFEIACRLSDEDDTLAY---ERDCNGQSPLHLASENGKL------------SLLKRL 270
              +   +       D L       D   ++ LH       +             L+  +
Sbjct: 149 KSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWI 208

Query: 271 LHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAI 330
           +      I+    +  +  +        +++  +     I +M+N+ D  G+T L++AA 
Sbjct: 209 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR 268

Query: 331 NNHFNIVLILARNMRVNIRATNEKKQTAL 359
             + +IV  L      +    N+     +
Sbjct: 269 LGNISIVDALLDY-GADPFIANKSGLRPV 296

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.4 bits (163), Expect = 5e-13
 Identities = 29/249 (11%), Positives = 73/249 (29%), Gaps = 21/249 (8%)

Query: 98  GNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAI 157
            +      +   +         H +      ++          L   +++ G +PL    
Sbjct: 56  TSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLT 115

Query: 158 DAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNF---VVMAKILEAKRDLINVLD 214
                 +   ++K   +   +      + L  A+   N         +L+     + + D
Sbjct: 116 SIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED 174

Query: 215 KRDRNPLHYAAALGHFEIAC------------RLSDEDDTLAYERDCNGQSPLHLASENG 262
             +R  LH+                        +  + +          +S  +  +   
Sbjct: 175 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER 234

Query: 263 KLSLLKRLLHSYPDS--IEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLE 320
           K S+L+ L   +  +  +   D      L++AA+ G+ ++V     L +       ++  
Sbjct: 235 KDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA---LLDYGADPFIANKS 291

Query: 321 GNTPLHLAA 329
           G  P+   A
Sbjct: 292 GLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.0 bits (162), Expect = 6e-13
 Identities = 41/292 (14%), Positives = 79/292 (27%), Gaps = 38/292 (13%)

Query: 7   VLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVS 66
            L R L              + N   +   +     H++     + V       + +L  
Sbjct: 42  FLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNI 101

Query: 67  VENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKC 126
             +    TP+H      N  + K  ++   N              D  G + L  AV+  
Sbjct: 102 PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL----------YGDNMGESCLVKAVKSV 151

Query: 127 DGKMAFTMIRKDPELICYIN---KAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPND 183
           +   + T       L   +       ++ L   I            K  L          
Sbjct: 152 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLD--------- 202

Query: 184 LTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTL 243
                        ++M  I++ +   I        +  +         I   L  +    
Sbjct: 203 -------------ILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA 249

Query: 244 AY--ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAA 293
                +D NG + L++A+  G +S++  LL    D     +K     +   A
Sbjct: 250 NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFGA 300

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.2 bits (183), Expect = 4e-16
 Identities = 31/229 (13%), Positives = 61/229 (26%), Gaps = 7/229 (3%)

Query: 39  DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNG 98
           +  LH A        V E+L  +P L+  ++     P+H +       +    +      
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS-KMEN 59

Query: 99  NNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAID 158
            N   + D            + N                +      +     +      +
Sbjct: 60  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 119

Query: 159 AGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDR 218
                I              +   +   LH A    +  ++  +    +  +N  DK+  
Sbjct: 120 VSQFLIENGASV------RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW 173

Query: 219 NPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLL 267
            PL +A A GH + A  L ++        D  G     +A         
Sbjct: 174 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 222

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.5 bits (168), Expect = 4e-14
 Identities = 33/227 (14%), Positives = 72/227 (31%), Gaps = 11/227 (4%)

Query: 74  TPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFT 133
            P+H A     F   +  +    +            ++D++G  PLH +V     ++   
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLL---------QKDQDGRIPLHWSVSFQAHEITSF 52

Query: 134 MIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLL--HIAI 191
           ++ K   +               I   + ++          +           +      
Sbjct: 53  LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA 112

Query: 192 IKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNG 251
           +   +  +++ L      + + DK ++ PLH AA++G  ++   L     +    +D  G
Sbjct: 113 VGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 172

Query: 252 QSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHA 298
            +PL  A   G       L+  Y    + +D K      +A      
Sbjct: 173 WTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVK 219

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.3 bits (152), Expect = 5e-12
 Identities = 43/230 (18%), Positives = 82/230 (35%), Gaps = 7/230 (3%)

Query: 116 NTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSV 175
           N PLH A  + +      ++   P L+   ++ G+ PL  ++      I   ++ +  +V
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 176 LDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPL--HYAAALGHFEIA 233
                P+D       I  S   +        R L   L+K     +   + A    +   
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 234 CRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAA 293
            +   E+      +D   Q PLH A+  G L L++ L      ++ + DK+    L  A 
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 180

Query: 294 QNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARN 343
             GH +  V +  + +     +  D +G     +A    +  +      N
Sbjct: 181 AEGHGDAAVLL--VEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 225

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 9e-10
 Identities = 38/211 (18%), Positives = 69/211 (32%), Gaps = 38/211 (18%)

Query: 187 LHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYE 246
           LH A +++ F  + ++L +K  L+   D+  R PLH++ +    EI   L  + + +  +
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 63

Query: 247 RDCNGQSPLHLASENGKLSLLKR------------------------------------L 270
              +              +L                                        
Sbjct: 64  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 123

Query: 271 LHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAI 330
           L     S+   DK N+  LH AA  G   ++  +  L +    +N  D +G TPL  A  
Sbjct: 124 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK--SAVNWQDKQGWTPLFHALA 181

Query: 331 NNHFNIVLILARNMRVNIRATNEKKQTALAI 361
             H +  ++L           + K   A  +
Sbjct: 182 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 212

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 2e-09
 Identities = 31/218 (14%), Positives = 66/218 (30%), Gaps = 7/218 (3%)

Query: 8   LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSV 67
           L +A    +   V+E      + +L   Q+    LH +  F    +   +L    ++   
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 63

Query: 68  ENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCD 127
           +                  +  +                       +G T LH AV K  
Sbjct: 64  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK------ITNQGVTCLHLAVGKKW 117

Query: 128 GKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLL 187
            +++  +I      +   +K  Q PL  A   G   +   +     S ++ +     T L
Sbjct: 118 FEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 176

Query: 188 HIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAA 225
             A+ + +      ++E      +++D +       A 
Sbjct: 177 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 214

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 9e-05
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 322 NTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL--AIVQPSLHQNDILEGHG 376
           N PLH A + N F  V  L  +    +   ++  +  L  ++   +      L    
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 6e-15
 Identities = 50/225 (22%), Positives = 79/225 (35%), Gaps = 8/225 (3%)

Query: 116 NTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSV 175
           N  + N       +     I  D  L    ++  ++ L  A  AG T I   +++  + V
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 176 LDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACR 235
            D        L   A    + +V    L  K   +N +++    PLHYAA+    EIA  
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVK--ALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVM 121

Query: 236 LSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQN 295
           L +        +D    + +H A+  G L ++  L   Y  S    D +    LHLA   
Sbjct: 122 LLEGGANPD-AKDHYEATAMHRAAAKGNLKMIHIL-LYYKASTNIQDTEGNTPLHLACDE 179

Query: 296 GHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
                      L      I   + E  TPL +A       I+  +
Sbjct: 180 ERVEEAKL---LVSQGASIYIENKEEKTPLQVAK-GGLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (172), Expect = 1e-14
 Identities = 44/233 (18%), Positives = 89/233 (38%), Gaps = 15/233 (6%)

Query: 72  SETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMA 131
           S   +   A +G     K  +              +  + D++  T LH A      ++ 
Sbjct: 3   SNLMVCNLAYSGKLEELKESILADK---------SLATRTDQDSRTALHWACSAGHTEIV 53

Query: 132 FTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAI 191
             +++    +    +     PL +A  AG   I   ++ +  + ++    N  T LH A 
Sbjct: 54  EFLLQLGVPVNDKDDAGWS-PLHIAASAGRDEIVKALLGKG-AQVNAVNQNGCTPLHYAA 111

Query: 192 IKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNG 251
            K+   +   +LE   +  +  D  +   +H AAA G+ ++   L     +    +D  G
Sbjct: 112 SKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEG 169

Query: 252 QSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI 304
            +PLHLA +  ++   K L+      I   +K+ +  L +A   G   ++  +
Sbjct: 170 NTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVAK-GGLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 2e-14
 Identities = 48/233 (20%), Positives = 92/233 (39%), Gaps = 15/233 (6%)

Query: 39  DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNG 98
           +  +   A  G    + E +     L +  +  S T +H A  AG+  + +  ++     
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 99  NNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAID 158
           N+                +PLH A      ++   ++ K  + +  +N+ G +PL  A  
Sbjct: 64  NDKDDAG----------WSPLHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAAS 112

Query: 159 AGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDR 218
                IA  +++   +  D +   + T +H A  K   + M  IL   +   N+ D    
Sbjct: 113 KNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAK-GNLKMIHILLYYKASTNIQDTEGN 170

Query: 219 NPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLL 271
            PLH A      E A  L  +  ++ Y  +   ++PL +A + G   +LKR++
Sbjct: 171 TPLHLACDEERVEEAKLLVSQGASI-YIENKEEKTPLQVA-KGGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 7e-11
 Identities = 36/231 (15%), Positives = 70/231 (30%), Gaps = 15/231 (6%)

Query: 8   LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSV 67
           +      G    ++ES   + +      Q+  TALH A   GH  +V  +          
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFL---------- 56

Query: 68  ENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCD 127
                           +                       +   ++ G TPLH A  K  
Sbjct: 57  -LQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR 115

Query: 128 GKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLL 187
            ++A  ++          +    + +  A   G   +   ++  K S  + +     T L
Sbjct: 116 HEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEGNTPL 173

Query: 188 HIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSD 238
           H+A  +        ++      I + +K ++ PL  A   G   I  R+ +
Sbjct: 174 HLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVAKG-GLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 1e-10
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 5/139 (3%)

Query: 221 LHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEF 280
           +   A  G  E        D +LA   D + ++ LH A   G       ++         
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGH----TEIVEFLLQLGVP 62

Query: 281 LDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
           ++ K+            A     +  L      +N+ +  G TPLH AA  N   I ++L
Sbjct: 63  VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML 122

Query: 341 ARNMRVNIRATNEKKQTAL 359
                 N  A +  + TA+
Sbjct: 123 LEG-GANPDAKDHYEATAM 140

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 4e-10
 Identities = 30/183 (16%), Positives = 61/183 (33%), Gaps = 6/183 (3%)

Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLA 244
            ++           + + + A + L    D+  R  LH+A + GH EI   L      + 
Sbjct: 5   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64

Query: 245 YERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI 304
            + D          + +     + + L      +  +++     LH AA      + V  
Sbjct: 65  DKDDAGWSPLHI--AASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVM- 121

Query: 305 SKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQP 364
             L E     ++ D    T +H AA   +  ++ IL    + +    + +  T L +   
Sbjct: 122 --LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL-LYYKASTNIQDTEGNTPLHLACD 178

Query: 365 SLH 367
              
Sbjct: 179 EER 181

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 6e-15
 Identities = 35/233 (15%), Positives = 79/233 (33%), Gaps = 12/233 (5%)

Query: 39  DTALHIAARFGHKNVVMEILELRPDL---VSVENHKSETPMHVAARAGNFGVAKIFMRPH 95
           DT LHIA   G+   V  ++ L       + + N+  +TP+H+A       V ++ +   
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 96  GNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSL 155
            +                E  +P                       +   N  G + L +
Sbjct: 64  ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD-------LEARNYDGLTALHV 116

Query: 156 AIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDK 215
           A++         +++    +      +  + L  A+  ++  ++ ++L      +N    
Sbjct: 117 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV-QLLLQHGANVNAQMY 175

Query: 216 RDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLK 268
              + LH A+  G   +   L          ++C+  +PL +A     + +L+
Sbjct: 176 SGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (162), Expect = 2e-13
 Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 9/230 (3%)

Query: 113 EEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKA---GQSPLSLAIDAGLTHIACCII 169
           E+G+TPLH AV + +      ++    +    ++      Q+PL LA+   L  +   ++
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 170 KEKLSVLDHRGPNDLTLLHIAII--KSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAAL 227
               S +                   +    +          +   +      LH A   
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120

Query: 228 GHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRN 287
              E    L +    +      +G+SPL  A EN  LS+++ LL  +  ++        +
Sbjct: 121 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ-LLLQHGANVNAQMYSGSS 179

Query: 288 ILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIV 337
            LH A+  G   +V     L       +  +   +TPL +A      +I+
Sbjct: 180 ALHSASGRGLLPLVRT---LVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 3e-07
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 43/216 (19%)

Query: 185 TLLHIAIIKSNFVVMAKILEAKRDL---INVLDKRDRNPLHYAAA--------------- 226
           T LHIA+++ N   + +++   +     +++ +   + PLH A                 
Sbjct: 5   TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 64

Query: 227 ---------------------LGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLS 265
                                          +         R+ +G + LH+A       
Sbjct: 65  SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE 124

Query: 266 LLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPL 325
            ++ LL    D      K  R+ L  A +N   ++V     L +    +N+    G++ L
Sbjct: 125 TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL---LLQHGANVNAQMYSGSSAL 181

Query: 326 HLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
           H A+      +V  L R+   +    N    T L +
Sbjct: 182 HSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMV 216

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 320 EGNTPLHLAAINNHFNIVLILARNMR---VNIRATNEKKQTAL 359
           +G+TPLH+A +  +   V  L    +     +   N  +QT L
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPL 44

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 33/194 (17%), Positives = 64/194 (32%), Gaps = 8/194 (4%)

Query: 218 RNPLHYAAALGHFEIACRLSDEDDTLAYE---RDCNGQSPLHLASENGKLSLLKRLLHSY 274
             PLH A   G+     RL +       E    +   Q+PLHLA      S+++ L+ + 
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 275 PDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHF 334
              +                     +   +         + + + +G T LH+A      
Sbjct: 64  ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 123

Query: 335 NIVLILARNMRVNIRATNEKKQTAL--AIVQPSLHQNDILEGHGGSASGT---GTTTTDL 389
             V +L            +  ++ L  A+   SL    +L  HG + +     G++    
Sbjct: 124 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHS 183

Query: 390 IAGPKNEDMAQNLL 403
            +G     + + L+
Sbjct: 184 ASGRGLLPLVRTLV 197

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (165), Expect = 9e-14
 Identities = 34/203 (16%), Positives = 66/203 (32%), Gaps = 9/203 (4%)

Query: 37  NRDTALHIAARFGHKNVVMEILEL---RPDLVSVENHKSETPMHVAARAGNFGVAKIFMR 93
           + D+ LH+A     K + ME++         ++ +N+  +TP+H+A            + 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQP-----EIA 55

Query: 94  PHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPL 153
               G          R             +                 ++   N  G + L
Sbjct: 56  EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 115

Query: 154 SLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVL 213
            LA   G   I   ++     V      N  T LH+A+   N  +++ +L+   D +N +
Sbjct: 116 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRV 174

Query: 214 DKRDRNPLHYAAALGHFEIACRL 236
             +  +P           I  +L
Sbjct: 175 TYQGYSPYQLTWGRPSTRIQQQL 197

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 7e-10
 Identities = 40/249 (16%), Positives = 76/249 (30%), Gaps = 44/249 (17%)

Query: 114 EGNTPLHNAVRKCDGKMAFTMIRKDPELICYIN---KAGQSPLSLAI----DAGLTHIAC 166
           +G++ LH A+   +  +   +IR+    + ++N      Q+PL LA+          +  
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 167 CIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAA 226
                +L       P  L      +     +  +        ++   +      LH A+ 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 227 LGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNR 286
            G+  I   L      +  +  CNG++ LHLA +     L+  LL    D          
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD---------- 170

Query: 287 NILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRV 346
                                      +N    +G +P  L        I   L +    
Sbjct: 171 ---------------------------VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

Query: 347 NIRATNEKK 355
           N++   E +
Sbjct: 204 NLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 8e-05
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 320 EGNTPLHLAAINNHFNIVLILARNM---RVNIRATNEKKQTAL 359
           +G++ LHLA I+    + + + R +      +   N  +QT L
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPL 43

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 6/107 (5%)

Query: 9   FRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVE 68
             A   G    V     L  +       N  TALH+A    + ++V  +L+   D V+  
Sbjct: 116 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRV 174

Query: 69  NHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEG 115
            ++  +P  +     +  + +   +     N       +   +DEE 
Sbjct: 175 TYQGYSPYQLTWGRPSTRIQQQLGQ-LTLENL----QMLPESEDEES 216

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.6 bits (166), Expect = 1e-13
 Identities = 42/248 (16%), Positives = 79/248 (31%), Gaps = 18/248 (7%)

Query: 107 ILRKQDEEGNTPLHNAVRKCDGKMAFTMIRK--DPELICYINKAGQSPLSLAIDAGLTHI 164
           +     E+G+T LH AV          ++      E +   N  GQ+ L LA   G    
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 165 ACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRD------------LINV 212
               +    + +        T LH+A           +L+ +                + 
Sbjct: 61  -VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119

Query: 213 LDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLH 272
                  P    +            ++        + +G +PLH+A  +    +++ L  
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD 179

Query: 273 SYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINN 332
           +  D  +      R  LHLA +   A+V+     L +      +    G TPL  A +  
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLEL---LLKAGADPTARMYGGRTPLGSALLRP 236

Query: 333 HFNIVLIL 340
           +  +  +L
Sbjct: 237 NPILARLL 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.0 bits (162), Expect = 4e-13
 Identities = 46/269 (17%), Positives = 77/269 (28%), Gaps = 35/269 (13%)

Query: 35  SQNRDTALHIAARFGHKNVVMEILELR--PDLVSVENHKSETPMHVAARAGNFGVAKIFM 92
           +++ DTALH+A    H+  +  +L      + + ++N   +T +H+AA  G     +   
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 93  RPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSP 152
                                                +      +     C + +   S 
Sbjct: 66  AAGAGVLVAERGGHTA---------------------LHLACRVRAHTCACVLLQPRPSH 104

Query: 153 LSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINV 212
              A D  LT    C                     +    +         E  R  +  
Sbjct: 105 PRDASDTYLTQSQDC-----------TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA 153

Query: 213 LDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLH 272
            +     PLH A      E+   L D    L       G++PLHLA E    S+L+ LL 
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213

Query: 273 SYPDSIEFLDKKNRNILHLAAQNGHANVV 301
           +  D         R  L  A    +  + 
Sbjct: 214 AGAD-PTARMYGGRTPLGSALLRPNPILA 241

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 64.4 bits (155), Expect = 5e-12
 Identities = 43/253 (16%), Positives = 83/253 (32%), Gaps = 15/253 (5%)

Query: 109 RKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCI 168
            K   +       A    D +    ++ +  + I Y N  G + L  A       +   +
Sbjct: 34  TKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFL 92

Query: 169 IKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALG 228
           ++   ++        +     A     ++ +A+ L ++   +  ++     PL  A    
Sbjct: 93  VENGANINQPDNEGWIP--LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEA 150

Query: 229 HFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNI 288
             E+     +             +  +   +           L+S   +     K     
Sbjct: 151 MEELLQNEVNRQGVDIEAARKEEERIMLRDARQW--------LNSGHINDVRHAKSGGTA 202

Query: 289 LHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNI 348
           LH+AA  G+  V+     L +    +N  D +G TPLH AA         IL  N   ++
Sbjct: 203 LHVAAAKGYTEVLKL---LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDM 258

Query: 349 RATNEKKQTALAI 361
            A N+  QTA  +
Sbjct: 259 EAVNKVGQTAFDV 271

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 62.0 bits (149), Expect = 2e-11
 Identities = 44/307 (14%), Positives = 81/307 (26%), Gaps = 58/307 (18%)

Query: 37  NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
           +       A   G    V+ +LE   D ++  N    T +H A    N  + K  +    
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGA 97

Query: 97  NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLA 156
           N N       I                    G     +   + E    ++          
Sbjct: 98  NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH---VGAVNSEGDTPLD---------- 144

Query: 157 IDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKR 216
                       ++E L    +R   D+        +       + L +         K 
Sbjct: 145 ------IAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS 198

Query: 217 DRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPD 276
               LH AAA G+ E+   L      +   +D +G +PLH A+  GK    + L+ +  D
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCD 257

Query: 277 SIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNI 336
                                                + + +  G T   +A  +    +
Sbjct: 258 -------------------------------------MEAVNKVGQTAFDVADEDILGYL 280

Query: 337 VLILARN 343
             +  + 
Sbjct: 281 EELQKKQ 287

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.8 bits (112), Expect = 1e-06
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 11/100 (11%)

Query: 27  NGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFG 86
                +  +++  TALH+AA  G+  V+  +++ R D V+++++   TP+H AA  G   
Sbjct: 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEE 246

Query: 87  VAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKC 126
             +I +    +              ++ G T    A    
Sbjct: 247 ACRILVENLCDME----------AVNKVGQTAFDVADEDI 276

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 55.2 bits (131), Expect = 2e-09
 Identities = 30/204 (14%), Positives = 63/204 (30%), Gaps = 25/204 (12%)

Query: 53  VVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQD 112
           V+ ++L    +L +  +   ET +H+AAR      AK  +    + N+            
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 113 EEGNTPLHNAVRKCDGKMAFTMIRKDPELICYI-----------------------NKAG 149
              +      +   +          D      +                       + +G
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSG 123

Query: 150 QSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDL 209
           ++ L  A     T     ++    +  D +   D T L +A  + ++     +L+   + 
Sbjct: 124 KTALHWAAAVNNTEAVNILLMHHANR-DAQDDKDETPLFLAAREGSYEASKALLDNFAN- 181

Query: 210 INVLDKRDRNPLHYAAALGHFEIA 233
             + D  DR P   A+   H +I 
Sbjct: 182 REITDHMDRLPRDVASERLHHDIV 205

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.5 bits (124), Expect = 2e-08
 Identities = 41/235 (17%), Positives = 67/235 (28%), Gaps = 40/235 (17%)

Query: 106 DILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIA 165
           ++    D+ G T LH A R    +        D                 A  A      
Sbjct: 14  ELNATMDKTGETSLHLAARF--ARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGV 71

Query: 166 CCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAA 225
             I+    +   +   +D T   I   +     M + L      IN  D   +  LH+AA
Sbjct: 72  FQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAA 131

Query: 226 ALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKN 285
           A+ + E               +D   ++PL LA+  G     K LL ++ +         
Sbjct: 132 AVNNTEAVNI-LLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN--------- 181

Query: 286 RNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
                                          +D     P  +A+   H +IV +L
Sbjct: 182 ----------------------------REITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.3 bits (95), Expect = 8e-05
 Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 4/140 (2%)

Query: 198 VMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHL 257
           V++ +L    +L   +DK     LH AA     + A RL D       + +         
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSS 317
            + +              +    L+ +  +            +   +  L   +  IN++
Sbjct: 64  VAADAM----GVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAA 119

Query: 318 DLEGNTPLHLAAINNHFNIV 337
           D  G T LH AA  N+   V
Sbjct: 120 DNSGKTALHWAAAVNNTEAV 139

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 4e-07
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 7/154 (4%)

Query: 187 LHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYE 246
           L  A  + +   + ++L  +    + L++  +  L              L         +
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQD 65

Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
                       +         ++L  +   +   D      +HLA Q GH  VV F++ 
Sbjct: 66  TSGTSPVHDAARTGFLDT---LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122

Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
             ++    +  D  G TPL LA      ++V IL
Sbjct: 123 ESDL----HRRDARGLTPLELALQRGAQDLVDIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 1e-04
 Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 5/157 (3%)

Query: 115 GNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLS 174
               L  A  + D +    ++ ++      +N+ G++             A  +   K  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA---LQVMMFGSTAIALELLKQG 58

Query: 175 VLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIAC 234
              +      T       ++ F+   K+L      +NV D     P+H A   GH  +  
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS 118

Query: 235 RLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLL 271
            L+ E D   + RD  G +PL LA + G   L+  L 
Sbjct: 119 FLAAESD--LHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 21/164 (12%), Positives = 39/164 (23%), Gaps = 15/164 (9%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN 99
             L  AA  G    V  +L          N   +T + V          ++  +      
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 100 NTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDA 159
              +    +      G       + +    +          +   + +            
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE------------ 111

Query: 160 GLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKIL 203
              H A        S L  R    LT L +A ++     +  IL
Sbjct: 112 --GHTAVVSFLAAESDLHRRDARGLTPLELA-LQRGAQDLVDIL 152

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 20/133 (15%), Positives = 42/133 (31%), Gaps = 10/133 (7%)

Query: 219 NPLHYAAALGHFEIACRLSDE-----DDTLAYERDCNGQSPLHLASENGKLSLLK--RLL 271
           + L  A          +   +     +           ++ LHLA  +   + L     L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 272 HSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAIN 331
                +++    K    LH      +A  +  +      +  I  ++  G TPL +A   
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL---LRGKASIEIANESGETPLDIAKRL 124

Query: 332 NHFNIVLILARNM 344
            H +   +L + +
Sbjct: 125 KHEHCEELLTQAL 137

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 21/129 (16%), Positives = 36/129 (27%), Gaps = 13/129 (10%)

Query: 8   LFRALRRGDAATVR----ESARLNGNGILDMSQNRD-TALHIAARFGHKNVVMEILELRP 62
           L  A++  D   +     +   L     L      D TALH+A R   +  +  I++   
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL-HIVDFLV 68

Query: 63  DLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNA 122
                 + ++               A+          +           +E G TPL  A
Sbjct: 69  QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI-------EIANESGETPLDIA 121

Query: 123 VRKCDGKMA 131
            R       
Sbjct: 122 KRLKHEHCE 130

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-05
 Identities = 16/122 (13%), Positives = 30/122 (24%), Gaps = 5/122 (4%)

Query: 219 NPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSI 278
           + L  AAA G  E    L +             +    +   + +               
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSAR-----VAELLLLHGA 59

Query: 279 EFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVL 338
           E        +            +  +  L      ++  D  G  P+ LA    H ++  
Sbjct: 60  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR 119

Query: 339 IL 340
            L
Sbjct: 120 YL 121

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.4 bits (95), Expect = 4e-05
 Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 14/160 (8%)

Query: 74  TPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFT 133
             +  AARAG     +I M  +G    T          D  G +PLH A +         
Sbjct: 4   KKLLEAARAGQDDEVRILMA-NGAPFTT----------DWLGTSPLHLAAQYGHFSTTEV 52

Query: 134 MIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIK 193
           ++R          K  ++PL +A   G  +I   ++K    V          L       
Sbjct: 53  LLRAGVS-RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHN 111

Query: 194 SNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIA 233
              VV  ++L      ++   K  +     +   G+ ++A
Sbjct: 112 HQEVV--ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA 149

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 4/27 (14%), Positives = 12/27 (44%)

Query: 314 INSSDLEGNTPLHLAAINNHFNIVLIL 340
           +++      T   ++  N + ++  IL
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 5e-05
 Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 6/154 (3%)

Query: 187 LHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYE 246
           L  A  + +   +  +L+   + +N  +   R  L             R           
Sbjct: 5   LASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMK--LGNPEIARRLLLRGANPDL 61

Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
           +D  G + +H A+  G L  L+ L   +   +   D +    LHLAA+ GH  + V    
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTL-LEFQADVNIEDNEGNLPLHLAAKEGH--LRVVEFL 118

Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
           +      +   + +G+T   LA +     +V ++
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 152

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.001
 Identities = 19/167 (11%), Positives = 43/167 (25%), Gaps = 14/167 (8%)

Query: 40  TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN 99
             L  AA  G    +  +L+   ++ +                            +    
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-------------MKLGNPEIA 49

Query: 100 NTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDA 159
                        +     + +   +         + +    +   +  G  PL LA   
Sbjct: 50  RRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE 109

Query: 160 GLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAK 206
           G   +   ++K   S + HR     T   +A +     V   +++A 
Sbjct: 110 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV-VSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 22/155 (14%), Positives = 49/155 (31%), Gaps = 4/155 (2%)

Query: 117 TPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVL 176
             L +A  + D +   ++++ +      +N       +      L +             
Sbjct: 3   NELASAAARGDLEQLTSLLQNN----VNVNAQNGFGRTALQVMKLGNPEIARRLLLRGAN 58

Query: 177 DHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRL 236
                     +     ++ F+   + L   +  +N+ D     PLH AA  GH  +   L
Sbjct: 59  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 118

Query: 237 SDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLL 271
                +    R+  G +   LA   G+  ++  + 
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	464
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.98
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-51  Score=389.87  Aligned_cols=355  Identities=25%  Similarity=0.308  Sum_probs=322.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCH
Q 038664            6 RVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNF   85 (464)
Q Consensus         6 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~   85 (464)
                      ++||.||..|+.+.|+.+++. |.+++..|..|+||||+||..|+.++|++|+++|++ ++.++..|.||||+|+..|+.
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~-g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-i~~~~~~g~t~L~~A~~~g~~   79 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHT   79 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT-TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTSCCHHHHHHHHTCH
T ss_pred             ChHHHHHHCcCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCH
Confidence            489999999999999999976 569999999999999999999999999999999998 788999999999999999999


Q ss_pred             HHHHHHhcccCCCCCCcchH-----------------------HHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccc
Q 038664           86 GVAKIFMRPHGNGNNTGTFD-----------------------DILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELI  142 (464)
Q Consensus        86 ~~v~~Ll~~~~~~~~~~~~~-----------------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  142 (464)
                      +++++|+....+........                       ......+..+.++++.|+..++.++++.|++.+.+ +
T Consensus        80 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~-~  158 (408)
T d1n11a_          80 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-P  158 (408)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-T
T ss_pred             HHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCC-C
Confidence            99999998776543221110                       01233567889999999999999999999999988 4


Q ss_pred             cccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHH
Q 038664          143 CYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLH  222 (464)
Q Consensus       143 ~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~  222 (464)
                      +..+.+|.+||++|+..|+.+++++|++++.++ +..+..+.+|+|.++.....+....++..... ....+..+.|||+
T Consensus       159 ~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~t~l~  236 (408)
T d1n11a_         159 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLH  236 (408)
T ss_dssp             TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHH
T ss_pred             CcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcc-cccCCCCCCcchhhhccchhhhhhhhhhcccc-ccccCCCCCCHHH
Confidence            677889999999999999999999999999887 88889999999999999999999999988876 6677888999999


Q ss_pred             HHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHH
Q 038664          223 YAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVV  302 (464)
Q Consensus       223 ~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~  302 (464)
                      +|+..++.++++++...+.... ..+..|.||++.|++.++.+++++|++++.+ ++..+..+.||||.++..++.++++
T Consensus       237 ~a~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~~~~~~~~t~L~~~~~~~~~~~~~  314 (408)
T d1n11a_         237 LAAQEGHAEMVALLLSKQANGN-LGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVK  314 (408)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHH
T ss_pred             HHHHhCcHhHhhhhhccccccc-cccCCCCChhhhhhhcCcHHHHHHHHHCCCc-cccccccccccchhhcccCcceeee
Confidence            9999999999999999988777 5788999999999999999999999999998 4888999999999999999999999


Q ss_pred             HHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCchhhHH
Q 038664          303 FISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDI  371 (464)
Q Consensus       303 ~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~~  371 (464)
                      ++++.   +.++|.+|.+|+||||+|+++|+.++|++|+++ |+|++.+|++|+||+++|.+.++.+.+
T Consensus       315 ~ll~~---g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~-GAd~n~~d~~G~t~L~~A~~~~~~~iv  379 (408)
T d1n11a_         315 FLLQH---QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPLAIAKRLGYISVT  379 (408)
T ss_dssp             HHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             eeccc---cccccccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            99987   788999999999999999999999999999986 999999999999999999999887653

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-45  Score=348.37  Aligned_cols=325  Identities=27%  Similarity=0.387  Sum_probs=296.7

Q ss_pred             CchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcH
Q 038664           39 DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTP  118 (464)
Q Consensus        39 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~  118 (464)
                      .||||+||..|+.++|++|+++|++ ++..|..|+||||+|+..|+.+++++|+++|++.          +.++..|.||
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~-in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi----------~~~~~~g~t~   69 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV----------NAKAKDDQTP   69 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC-SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS----------SCCCTTSCCH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC----------CCCCCCCCCH
Confidence            4999999999999999999999998 7889999999999999999999999999999884          4789999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCcc--------------------------------ccccccCCCcHHHHHHHcCCHHHHH
Q 038664          119 LHNAVRKCDGKMAFTMIRKDPEL--------------------------------ICYINKAGQSPLSLAIDAGLTHIAC  166 (464)
Q Consensus       119 L~~A~~~~~~~~~~~Ll~~~~~~--------------------------------~~~~~~~g~t~l~~A~~~g~~~~~~  166 (464)
                      ||+|+..|+.+++++|+....+.                                ....+..+.++++.|+..++.++++
T Consensus        70 L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~  149 (408)
T d1n11a_          70 LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE  149 (408)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHH
Confidence            99999999999999999875432                                2234667889999999999999999


Q ss_pred             HHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCcccc
Q 038664          167 CIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYE  246 (464)
Q Consensus       167 ~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~  246 (464)
                      +|++.+.++ +..+..+.+||++|+..++.+++++|+.++++ ++..+..|.||+|++....+.+....++....... .
T Consensus       150 ~ll~~~~~~-~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~-~  226 (408)
T d1n11a_         150 LLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN-A  226 (408)
T ss_dssp             HHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred             HHHHcCCCC-CcCCCcCchHHHHHHHcCCHHHHHHHHhcCCc-ccccCCCCCCcchhhhccchhhhhhhhhhcccccc-c
Confidence            999999887 88888999999999999999999999999987 78899999999999999999999999999888776 5


Q ss_pred             ccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHH
Q 038664          247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLH  326 (464)
Q Consensus       247 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh  326 (464)
                      .+..+.|||+.|+..++.++++.++..... .+..+..|.||++.|++.++.+++++|++.   +.+++..+..+.||||
T Consensus       227 ~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~---g~~~~~~~~~~~t~L~  302 (408)
T d1n11a_         227 ESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKH---GVMVDATTRMGYTPLH  302 (408)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHH---TCCTTCCCSSCCCHHH
T ss_pred             cCCCCCCHHHHHHHhCcHhHhhhhhccccc-cccccCCCCChhhhhhhcCcHHHHHHHHHC---CCccccccccccccch
Confidence            778899999999999999999999998877 588899999999999999999999999876   7788999999999999


Q ss_pred             HHHHcCCchHHHHHHhccccccccccccCCChHHhhccCchhhH--HHhhcCCCCCCC
Q 038664          327 LAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQND--ILEGHGGSASGT  382 (464)
Q Consensus       327 ~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~--~l~~~g~~~~~~  382 (464)
                      .|+..++.++++++++. |++++.+|.+|+|||++|++.++.+.  +|.++|+++...
T Consensus       303 ~~~~~~~~~~~~~ll~~-g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~  359 (408)
T d1n11a_         303 VASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV  359 (408)
T ss_dssp             HHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred             hhcccCcceeeeeeccc-cccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            99999999999999976 99999999999999999998888765  477899987643

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-36  Score=273.21  Aligned_cols=275  Identities=20%  Similarity=0.205  Sum_probs=222.4

Q ss_pred             CCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCc
Q 038664           38 RDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNT  117 (464)
Q Consensus        38 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t  117 (464)
                      ++|+||.|+..|+.++|++|+++|+++....+..|+||||+|+..|+.+++++|++.+....          ..+..+.+
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~----------~~~~~~~~   74 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV----------LRKKNGAT   74 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTCCC
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccccc----------ccccccch
Confidence            46899999999999999999999988434445678999999999999999999998887643          56777888


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHH
Q 038664          118 PLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFV  197 (464)
Q Consensus       118 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~  197 (464)
                      |.+++...+..+....+++.... ....+..+.++++.|+..++...++.++...... +.....               
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~---------------  137 (285)
T d1wdya_          75 PFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKT---------------  137 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCC---------------
T ss_pred             hhHHHhhcCCccccchhhhhccc-ccccccCCCchhHHHHHhcchhhhhhhhhhcccc-cccccc---------------
Confidence            99999999999988888888665 3455777888888888888888888888766544 211110               


Q ss_pred             HHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhc-CCCccccccCCCCCcccc----cccCCcHHHHHHHHH
Q 038664          198 VMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDE-DDTLAYERDCNGQSPLHL----ASENGKLSLLKRLLH  272 (464)
Q Consensus       198 ~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~----A~~~g~~~~v~~Ll~  272 (464)
                               .......+..|.||||+|++.|+.+++++|+++ ++++. ..+..|.++++.    +...+..+++++|++
T Consensus       138 ---------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~  207 (285)
T d1wdya_         138 ---------KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLD  207 (285)
T ss_dssp             ---------CHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT-CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH
T ss_pred             ---------hhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcc-cccCCCCcccccccccccchHHHHHHHHHHH
Confidence                     011233456788999999999999999999876 44444 577777776554    444566789999999


Q ss_pred             HCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhcccccccccc
Q 038664          273 SYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATN  352 (464)
Q Consensus       273 ~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n  352 (464)
                      ++++ ++.++..|.||||+|++.|+.+++++|++..  +.+++.+|.+|+||||+|+++|+.+++++|+++ |||+|++|
T Consensus       208 ~ga~-~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~--g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~-GAd~n~~d  283 (285)
T d1wdya_         208 HGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQE--HIEINDTDSDGKTALLLAVELKLKKIAELLCKR-GASTDCGD  283 (285)
T ss_dssp             TTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS--SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SSCSCCSS
T ss_pred             CCCC-CCccCCCCCCccchhhhcCcHHHHHHHHHcC--CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCccc
Confidence            9988 5899999999999999999999999999753  678999999999999999999999999999976 99999987


Q ss_pred             c
Q 038664          353 E  353 (464)
Q Consensus       353 ~  353 (464)
                      .
T Consensus       284 ~  284 (285)
T d1wdya_         284 L  284 (285)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-36  Score=259.33  Aligned_cols=219  Identities=22%  Similarity=0.310  Sum_probs=135.5

Q ss_pred             CchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcH
Q 038664           39 DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTP  118 (464)
Q Consensus        39 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~  118 (464)
                      +++|+.+|..|+.+.|+.+++.++..++.+|..|+||||+|+..|+.+++++|++.+....          ..+..+.++
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~----------~~~~~~~~~   73 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN----------DKDDAGWSP   73 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC----------CCCTTCCCH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccc----------ccccccccc
Confidence            4566666666666666666666555566666666666666666666666666666554432          344455566


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHH
Q 038664          119 LHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVV  198 (464)
Q Consensus       119 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  198 (464)
                      ++.++..++.+++++|++++++ ++..|..|.||||+|+..|+.+++++|++++.++ +..+..+.+|||+|+..++.++
T Consensus        74 ~~~~~~~~~~~i~~~Ll~~~~d-~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~  151 (223)
T d1uoha_          74 LHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKM  151 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ccccccccccchhHHHhccCce-eEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcch
Confidence            6666666666666666666554 3455556666666666666666666666665554 5555566666666666666666


Q ss_pred             HHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHH
Q 038664          199 MAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLH  272 (464)
Q Consensus       199 ~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  272 (464)
                      ++.|++.+.+ ++..|.+|+||||+|++.|+.+++++|++.|+++. .+|..|+||||+| +.|+.+++++|++
T Consensus       152 ~~~L~~~~~~-i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~-~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         152 IHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY-IENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             hhhhccccce-eeeccCCCCceeccccccCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            6666665555 56666666666666666666666666666666655 4666666666665 3566666666653

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.1e-37  Score=270.78  Aligned_cols=245  Identities=18%  Similarity=0.163  Sum_probs=154.1

Q ss_pred             cccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccc
Q 038664           68 ENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINK  147 (464)
Q Consensus        68 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  147 (464)
                      .+.+|+||||+||+.|+.+++++|++.+++..       .++.++..|.||||+|+..|+.+++++|++.|++ ++..|.
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~-------~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-i~~~d~   76 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE-------YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAER   76 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG-------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCT
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-------cccCcCCCCCCccchHHhhccccccccccccccc-cccccc
Confidence            45566677777777777777776666665532       2445666777777777777777777777777766 345667


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHc
Q 038664          148 AGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAAL  227 (464)
Q Consensus       148 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~  227 (464)
                      +|.|||++|+..++.+++++|++........    ....+..........                  ....++......
T Consensus        77 ~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~----~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~  134 (255)
T d1oy3d_          77 GGHTALHLACRVRAHTCACVLLQPRPSHPRD----ASDTYLTQSQDCTPD------------------TSHAPAAVDSQP  134 (255)
T ss_dssp             TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCC----C--------------------------------------------
T ss_pred             ccchhhhhhhccCchHHHHHHHhhccchhcc----cchhhhhHHhhhccc------------------chHHHHHHHhhc
Confidence            7777777777777777777776654332110    000000000000000                  000000000000


Q ss_pred             CC-HHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhc
Q 038664          228 GH-FEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK  306 (464)
Q Consensus       228 ~~-~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~  306 (464)
                      .. ..........+...+ .++..|.||||+|++.|+.+++++|++.+.+.....+..|.||||+|++.++.+++++|++
T Consensus       135 ~~~~~~~~~~~~~~~~in-~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~  213 (255)
T d1oy3d_         135 NPENEEEPRDEDWRLQLE-AENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK  213 (255)
T ss_dssp             ---------CCCGGGGTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             chhHHHHHHhhhcCcccc-cccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHH
Confidence            00 111111222222333 5677888888888888888888888888888755667889999999999999999999987


Q ss_pred             CcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccc
Q 038664          307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVN  347 (464)
Q Consensus       307 ~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d  347 (464)
                      .   +++++.+|..|+||||+|++.++.+++++|+++ ||+
T Consensus       214 ~---gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~-Ga~  250 (255)
T d1oy3d_         214 A---GADPTARMYGGRTPLGSALLRPNPILARLLRAH-GAP  250 (255)
T ss_dssp             T---TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHT-TCC
T ss_pred             C---CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCC
Confidence            6   688899999999999999999999999999976 885

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.6e-37  Score=270.57  Aligned_cols=243  Identities=19%  Similarity=0.158  Sum_probs=172.8

Q ss_pred             cccCCCCchhHHHHhcCCHHHHHHHHHhCCc--cccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhh
Q 038664           33 DMSQNRDTALHIAARFGHKNVVMEILELRPD--LVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRK  110 (464)
Q Consensus        33 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  110 (464)
                      ..+.+|+||||+||.+|+.+++++|++.+++  .++.+|..|.||||+|+..|+.+++++|+++|++.+          .
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~----------~   73 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL----------V   73 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS----------C
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccccc----------c
Confidence            4678999999999999999999999998755  456788999999999999999999999999998854          7


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHH
Q 038664          111 QDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIA  190 (464)
Q Consensus       111 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a  190 (464)
                      +|.+|.||||+|+..++.++++.|++........    ................                  ...++...
T Consensus        74 ~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~----~~~~~~~~~~~~~~~~------------------~~~~~~~~  131 (255)
T d1oy3d_          74 AERGGHTALHLACRVRAHTCACVLLQPRPSHPRD----ASDTYLTQSQDCTPDT------------------SHAPAAVD  131 (255)
T ss_dssp             CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCC----C-----------------------------------------
T ss_pred             cccccchhhhhhhccCchHHHHHHHhhccchhcc----cchhhhhHHhhhcccc------------------hHHHHHHH
Confidence            8999999999999999999999999876543211    1111111100000000                  00000000


Q ss_pred             HHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHH
Q 038664          191 IIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRL  270 (464)
Q Consensus       191 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  270 (464)
                      ...........+.......++.++.+|.||||+|+..++.+++++|++.+.......+..|.||||+|++.|+.+++++|
T Consensus       132 ~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~L  211 (255)
T d1oy3d_         132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL  211 (255)
T ss_dssp             ------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             hhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHH
Confidence            00001111111112222235667788888888888888888888888888877766677788888888888888888888


Q ss_pred             HHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCc
Q 038664          271 LHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLP  308 (464)
Q Consensus       271 l~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~  308 (464)
                      +++|++ ++.+|..|+||||+|+.+++.+++++|++.+
T Consensus       212 l~~gad-in~~d~~g~t~L~~A~~~~~~~i~~~Ll~~G  248 (255)
T d1oy3d_         212 LKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAHG  248 (255)
T ss_dssp             HHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT
T ss_pred             HHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            888777 5888888888888888888888888888873

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-36  Score=257.65  Aligned_cols=218  Identities=21%  Similarity=0.244  Sum_probs=203.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCH
Q 038664            6 RVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNF   85 (464)
Q Consensus         6 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~   85 (464)
                      ..|+.+|++|+.+.++++|..++..++.+|..|+||||+||..|+.++++++++.+.. ....+..+.++++.|+..++.
T Consensus         5 ~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1uoha_           5 LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGRD   83 (223)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-SCCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccc-ccccccccccccccccccccc
Confidence            4678899999999999999999888889999999999999999999999999999888 566778899999999999999


Q ss_pred             HHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHH
Q 038664           86 GVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIA  165 (464)
Q Consensus        86 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~  165 (464)
                      +++++|++++.+.          +.+|..|.||||+|+..|+.+++++|++.|.+ ++..+..|.||||+|+..++.+++
T Consensus        84 ~i~~~Ll~~~~d~----------~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d-~~~~~~~~~t~L~~a~~~~~~~~~  152 (223)
T d1uoha_          84 EIVKALLGKGAQV----------NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMI  152 (223)
T ss_dssp             HHHHHHHHTTCCT----------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             chhHHHhccCcee----------EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCccchhhhhcCCcchh
Confidence            9999999998774          47899999999999999999999999999988 567899999999999999999999


Q ss_pred             HHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhh
Q 038664          166 CCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSD  238 (464)
Q Consensus       166 ~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~  238 (464)
                      ++|.+.+.++ +..+..|.||||.|+..++.+++++|++.+.+ ++.+|.+|+||||+| ..|+.+++++|++
T Consensus       153 ~~L~~~~~~i-~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad-~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         153 HILLYYKAST-NIQDTEGNTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             hhhcccccee-eeccCCCCceeccccccCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            9999999887 88999999999999999999999999999987 899999999999998 5799999999986

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-35  Score=255.40  Aligned_cols=226  Identities=20%  Similarity=0.228  Sum_probs=196.3

Q ss_pred             CchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcH
Q 038664           39 DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTP  118 (464)
Q Consensus        39 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~  118 (464)
                      ++|||+||..|+.++|+.|++.++..++.+|.+|+||||+|+..|+.+++++|++++++++       .....+..|.+|
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~-------~~~~~~~~~~~~   73 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN-------LDDYPDDSGWTP   73 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCC-------GGGCCCTTSCCH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccc-------cccccccccccc
Confidence            5899999999999999999998877788999999999999999999999999999888754       234567789999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCcc-ccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHH
Q 038664          119 LHNAVRKCDGKMAFTMIRKDPEL-ICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFV  197 (464)
Q Consensus       119 L~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~  197 (464)
                      +++++..+..++++.++..+... ....+..+.+|++.++..++.++++.|++.+... ...+..|.||||+|+..++.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~  152 (229)
T d1ixva_          74 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLK  152 (229)
T ss_dssp             HHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhccccc
Confidence            99999999999999888887643 3445677889999999999999999999988876 778888999999999999999


Q ss_pred             HHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhc-CCCccccccCCCCCcccccccCCcHHHHHHHHHHCCC
Q 038664          198 VMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDE-DDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPD  276 (464)
Q Consensus       198 ~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  276 (464)
                      +++.|++.++..++..|.+|+||||+|+..|+.+++++|+++ |++++ .+|..|+||||+|+.   .+++++|+++|+|
T Consensus       153 ~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~-~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         153 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD-LVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC-CCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             ccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCC-CcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            999999988776888899999999999999999999999974 77877 688899999999984   4789999998876

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-33  Score=253.33  Aligned_cols=273  Identities=22%  Similarity=0.227  Sum_probs=197.1

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhhcCCCcccc-cCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC
Q 038664            5 ARVLFRALRRGDAATVRESARLNGNGILDM-SQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG   83 (464)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g   83 (464)
                      +..|+.|++.|+.+.|+.|++. |.+++.+ +..|.||||+|+..|+.+++++|++.++. ....+..+.+|.++|+..+
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~-G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~-~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHC-CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccc-ccccccccchhhHHHhhcC
Confidence            4689999999999999998875 4688844 55799999999999999999999999988 6667889999999999999


Q ss_pred             CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHH
Q 038664           84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTH  163 (464)
Q Consensus        84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~  163 (464)
                      ..+...++++...+..          ..+..+.++++.|+..++...+..++....... .....  ....         
T Consensus        84 ~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~---------  141 (285)
T d1wdya_          84 SVKLLKLFLSKGADVN----------ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN-LRRKT--KEDQ---------  141 (285)
T ss_dssp             CHHHHHHHHHTTCCTT----------CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCC--CHHH---------
T ss_pred             Cccccchhhhhccccc----------ccccCCCchhHHHHHhcchhhhhhhhhhccccc-ccccc--hhhh---------
Confidence            9999999998766532          567889999999999999999999998765531 11111  0000         


Q ss_pred             HHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcC----CHHHHHHHhhc
Q 038664          164 IACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALG----HFEIACRLSDE  239 (464)
Q Consensus       164 ~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~----~~~~v~~Ll~~  239 (464)
                                   ......|.||||+|+++++.+++++|+++.+..++..+..|.++.+.+...+    ..+++++|+++
T Consensus       142 -------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~  208 (285)
T d1wdya_         142 -------------ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH  208 (285)
T ss_dssp             -------------HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT
T ss_pred             -------------hhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHC
Confidence                         1123345566666666666666666665544335666666666555544322    23566777777


Q ss_pred             CCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccC
Q 038664          240 DDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSD  318 (464)
Q Consensus       240 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d  318 (464)
                      |++++ .++..|.||||.|++.|+.+++++|++.++..++.+|.+|+||||+|+++|+.+++++|++.   |+++|.+|
T Consensus       209 ga~~n-~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~---GAd~n~~d  283 (285)
T d1wdya_         209 GADVN-VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR---GASTDCGD  283 (285)
T ss_dssp             TCCSS-CCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH---SSCSCCSS
T ss_pred             CCCCC-ccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCccc
Confidence            66665 45666777777777777777777777654434577777777777777777777777777766   66666665

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-33  Score=244.99  Aligned_cols=224  Identities=18%  Similarity=0.165  Sum_probs=203.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCcc--ccccccCCCCHHHHHHHhC
Q 038664            6 RVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDL--VSVENHKSETPMHVAARAG   83 (464)
Q Consensus         6 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~~A~~~g   83 (464)
                      .+||+||+.|+.+.++.+++..+..++.++.+|+||||+|+..|+.+++++|+++|++.  ....+..|.+|+|+|+..+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            48999999999999999999888788899999999999999999999999999998873  3456788999999999999


Q ss_pred             CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHH
Q 038664           84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTH  163 (464)
Q Consensus        84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~  163 (464)
                      ..++++.++..+....        ....+..+.||++.++..++.++++.|+..+.. ....+..|+||||+|+..|+.+
T Consensus        82 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~  152 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPD--------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLK  152 (229)
T ss_dssp             CHHHHHHHHSSSSCCC--------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHH
T ss_pred             cccccccccccccccc--------ccccccccccccccccccchhhhhhhhhhhccc-ccccCCCCCCccchhhhccccc
Confidence            9999999998887654        446778899999999999999999999999888 4667899999999999999999


Q ss_pred             HHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHh-CchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCC
Q 038664          164 IACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEA-KRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDT  242 (464)
Q Consensus       164 ~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~  242 (464)
                      ++++|++.+...++..+..|.||||+|+..++.+++++|+++ +.+ ++.+|.+|+||||+|+.   .+++++|+++|++
T Consensus       153 ~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad-~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         153 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC-SCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             ccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCC-CCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            999999998776788999999999999999999999999986 555 89999999999999984   5899999999875

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=2.2e-35  Score=264.15  Aligned_cols=261  Identities=19%  Similarity=0.256  Sum_probs=168.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHH--------HhCCccccccccCCCCHHHH
Q 038664            7 VLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEIL--------ELRPDLVSVENHKSETPMHV   78 (464)
Q Consensus         7 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~~g~t~L~~   78 (464)
                      +|+.+++.+..+.+.++|.+.+.+.. .+.+|+||||+||..|+.++|++|+        +.|++ ++.+|.+|+||||+
T Consensus         3 p~~~~~~~~~~~~~~~~l~~~~~n~~-~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gad-vn~~d~~G~TpLh~   80 (277)
T d2fo1e1           3 PIKLHTEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VNAMDCDENTPLML   80 (277)
T ss_dssp             CCHHHHHHHSSSCCCSCCSTTTTTTC-CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-TTCCCTTSCCHHHH
T ss_pred             hHHHHHHhCCCHHHHHHHHhcCCCcC-CCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCC-ccccCCCCCeeecc
Confidence            45555555555555566655533322 2235778888888888877776664        44666 66777788888888


Q ss_pred             HHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCc--cccccccCCCcHHHHH
Q 038664           79 AARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPE--LICYINKAGQSPLSLA  156 (464)
Q Consensus        79 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~--~~~~~~~~g~t~l~~A  156 (464)
                      |+..|+.+++++|+++|++++          .++..|.|||++|+..++.++++.+......  .....+..+.++.+.+
T Consensus        81 A~~~g~~~iv~~Ll~~Gad~n----------~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  150 (277)
T d2fo1e1          81 AVLARRRRLVAYLMKAGADPT----------IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV  150 (277)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSC----------CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHH
T ss_pred             ccccccccccccccccccccc----------cccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHH
Confidence            888888888888888777643          5677777888888877777777776654321  1233455566666666


Q ss_pred             HHcCCHHH---HHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHH
Q 038664          157 IDAGLTHI---ACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIA  233 (464)
Q Consensus       157 ~~~g~~~~---~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v  233 (464)
                      ...+..+.   +..+.+..... ..                          ......+..+..|.||||+++..++.+++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~-~~--------------------------~~~~~~~~~~~~g~t~L~~~~~~~~~~~~  203 (277)
T d2fo1e1         151 AHNEGRDQVASAKLLVEKGAKV-DY--------------------------DGAARKDSEKYKGRTALHYAAQVSNMPIV  203 (277)
T ss_dssp             HHSCSTTHHHHHHHHHHHTCCS-SC--------------------------CSGGGTSSSSCCCCCTHHHHHSSCCHHHH
T ss_pred             Hhcccccccccccccccccccc-cc--------------------------cccccccccccCCCCcccccccccccccc
Confidence            65554322   22222211111 00                          00111234456777888888888888777


Q ss_pred             HHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcC
Q 038664          234 CRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL  307 (464)
Q Consensus       234 ~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~  307 (464)
                      ++++.........+|..|+||||+|++.|+.+++++|+++|++ ++.+|.+|+||||+|+++|+.+++++|.+.
T Consensus       204 ~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad-in~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         204 KYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             ccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            7665554444446777788888888888888888888888777 477888888888888888888888887653

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.2e-34  Score=259.35  Aligned_cols=254  Identities=22%  Similarity=0.300  Sum_probs=206.5

Q ss_pred             CCHHHHHHH-hCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHH--------HhCCcccc
Q 038664           73 ETPMHVAAR-AGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMI--------RKDPELIC  143 (464)
Q Consensus        73 ~t~L~~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll--------~~~~~~~~  143 (464)
                      +||||+++. .|+.++++.|.+.+.+..           ....|+||||+|+..|+.++++.|+        +.|++ ++
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~-----------~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gad-vn   68 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNII-----------DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VN   68 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTC-----------CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-TT
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcC-----------CCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCC-cc
Confidence            489997766 467777777776654422           2246999999999999998887774        45666 46


Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCch--hhhhhcCCCCcHH
Q 038664          144 YINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRD--LINVLDKRDRNPL  221 (464)
Q Consensus       144 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~g~t~L  221 (464)
                      .+|.+|.||||+|+..|+.+++++|+++|+++ +.++..|.||++.|+..++.++.+.+......  .++..+..+.++.
T Consensus        69 ~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  147 (277)
T d2fo1e1          69 AMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL  147 (277)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHH
T ss_pred             ccCCCCCeeecccccccccccccccccccccc-ccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhH
Confidence            78999999999999999999999999999987 88899999999999999999999888765432  2445677888999


Q ss_pred             HHHHHcCCHH---HHHHHhhcCCCc-------cccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHH
Q 038664          222 HYAAALGHFE---IACRLSDEDDTL-------AYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHL  291 (464)
Q Consensus       222 ~~a~~~~~~~---~v~~Ll~~~~~~-------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~  291 (464)
                      +.+...+..+   .+..+.+.....       ....+..|+||||.++..++.+++++++...+...+.+|..|+||||+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~  227 (277)
T d2fo1e1         148 MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIML  227 (277)
T ss_dssp             HHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHH
T ss_pred             HHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHH
Confidence            9988877544   334443332211       113556789999999999999999998888777778899999999999


Q ss_pred             HHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHh
Q 038664          292 AAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILAR  342 (464)
Q Consensus       292 A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  342 (464)
                      |++.|+.+++++|++.   |+++|.+|.+|+||||+|++.|+.++|++|++
T Consensus       228 A~~~g~~~iv~~Ll~~---gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         228 AAQEGRIEVVMYLIQQ---GASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHTCHHHHHHHHHT---TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHC---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999987   78899999999999999999999999999985

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=5.2e-34  Score=257.01  Aligned_cols=269  Identities=19%  Similarity=0.230  Sum_probs=180.3

Q ss_pred             HHcCCHHHHHHHHhhcCCCcc---------cccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHh
Q 038664           12 LRRGDAATVRESARLNGNGIL---------DMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARA   82 (464)
Q Consensus        12 ~~~g~~~~~~~ll~~~~~~~~---------~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~   82 (464)
                      ++....+.++.++.... +.+         ..+.++.|+|+.||..|+.++|++|+++|++ ++..|.+|.||||+|+..
T Consensus         6 ~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gad-vn~~d~~G~T~L~~A~~~   83 (291)
T d1s70b_           6 AKQKRNEQLKRWIGSET-DLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACID   83 (291)
T ss_dssp             HHHHHHHHHHHHHHTTT-SSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHHHT
T ss_pred             HhHhhHHHHHHHHhCcc-cccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCcHHHHHHhc
Confidence            34445677777776544 222         1123356899999999999999999999999 788999999999999999


Q ss_pred             CCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCH
Q 038664           83 GNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLT  162 (464)
Q Consensus        83 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~  162 (464)
                      |+.+++++|++++.+..          ..+..+.+||++++..++.++++.|++.+.. ....+..+.+|+++|+..+..
T Consensus        84 g~~eiv~~Ll~~~~~~~----------~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~a~~~~~~  152 (291)
T d1s70b_          84 DNVDMVKFLVENGANIN----------QPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAME  152 (291)
T ss_dssp             TCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHH
T ss_pred             CCceeeeeecccccccc----------cccccccccccccccccccchhhcccccCcc-cccccccCccccccccccccc
Confidence            99999999999987743          5677889999999999999999999998876 456788899999999888888


Q ss_pred             HHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCC
Q 038664          163 HIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDT  242 (464)
Q Consensus       163 ~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~  242 (464)
                      +.++.++..........       ....... ........+..........+..|.||||.|+..|+.+++++|++.|++
T Consensus       153 ~~~~~ll~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d  224 (291)
T d1s70b_         153 ELLQNEVNRQGVDIEAA-------RKEEERI-MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD  224 (291)
T ss_dssp             HHHHHHHHHHTCCHHHH-------HHHHHHH-HHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred             hhccccccccccccccc-------ccccccc-ccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceec
Confidence            88888886543220000       0000000 011111112222221334455666666666666666666666666665


Q ss_pred             ccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcC
Q 038664          243 LAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL  307 (464)
Q Consensus       243 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~  307 (464)
                      ++ .++..|+||||+|++.|+.++|++|+++|++ ++.+|..|+||||+|++    +++++|.+.
T Consensus       225 in-~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gad-v~~~d~~G~TaL~~A~e----~~~~~L~~~  283 (291)
T d1s70b_         225 VN-IKDYDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADE----DILGYLEEL  283 (291)
T ss_dssp             TT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTTTSCCS----GGGHHHHHH
T ss_pred             cc-ccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHH----HHHHHHHHH
Confidence            55 4555666666666666666666666666655 36666666666666653    344444433

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.98  E-value=5e-32  Score=243.89  Aligned_cols=242  Identities=21%  Similarity=0.231  Sum_probs=199.3

Q ss_pred             cHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCC
Q 038664            5 ARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGN   84 (464)
Q Consensus         5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~   84 (464)
                      .++|+.||+.|+.+.|+.||+.+ .+++..|.+|.||||+|+..|+.++|++|++++.+ ....+..+.|||++|+..++
T Consensus        41 ~t~l~~A~~~G~~~~v~~Ll~~G-advn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~-~~~~~~~~~~~L~~a~~~~~  118 (291)
T d1s70b_          41 GAVFLAACSSGDTEEVLRLLERG-ADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGY  118 (291)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHC-CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTC
T ss_pred             chHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCcHHHHHHhcCCceeeeeecccccc-cccccccccccccccccccc
Confidence            36899999999999999999755 58999999999999999999999999999999988 67788899999999999999


Q ss_pred             HHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHH
Q 038664           85 FGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHI  164 (464)
Q Consensus        85 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~  164 (464)
                      .++++.|++++...          ...+..+.+|+++|+..+..+.++.++................+.       ....
T Consensus       119 ~~~~~~l~~~~~~~----------~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~-------~~~~  181 (291)
T d1s70b_         119 LDIAEYLISQGAHV----------GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM-------LRDA  181 (291)
T ss_dssp             HHHHHHHHHTTCCT----------TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-------HHHH
T ss_pred             cchhhcccccCccc----------ccccccCccccccccccccchhccccccccccccccccccccccc-------cccc
Confidence            99999999988764          367889999999999999999999998764332211111111111       1122


Q ss_pred             HHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCcc
Q 038664          165 ACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLA  244 (464)
Q Consensus       165 ~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~  244 (464)
                      ...+..... .....+..+.||||.|+..++.++++.|++.+.+ ++..+.+|+||||+|+..|+.+++++|+++|++++
T Consensus       182 ~~~~~~~~~-~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d-in~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~  259 (291)
T d1s70b_         182 RQWLNSGHI-NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME  259 (291)
T ss_dssp             HHHHHHTCC-CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             hhhhccccc-ccccccCCCCChhhHHHHcCChhhhcccccceec-ccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            222333333 3366778899999999999999999999999987 89999999999999999999999999999999987


Q ss_pred             ccccCCCCCcccccccCCcHHHHHHHHH
Q 038664          245 YERDCNGQSPLHLASENGKLSLLKRLLH  272 (464)
Q Consensus       245 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  272 (464)
                       .+|..|+||||+|++    +++++|.+
T Consensus       260 -~~d~~G~TaL~~A~e----~~~~~L~~  282 (291)
T d1s70b_         260 -AVNKVGQTAFDVADE----DILGYLEE  282 (291)
T ss_dssp             -CCCTTSCCTTTSCCS----GGGHHHHH
T ss_pred             -CcCCCCCCHHHHHHH----HHHHHHHH
Confidence             689999999999986    34444443

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.5e-31  Score=226.99  Aligned_cols=220  Identities=17%  Similarity=0.238  Sum_probs=183.1

Q ss_pred             CCCCchhHHHHhcCCHHHHHHHHH----hCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhc
Q 038664           36 QNRDTALHIAARFGHKNVVMEILE----LRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQ  111 (464)
Q Consensus        36 ~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  111 (464)
                      .+|+||||+||.+|+.++|++|++    .|.+ ++.+|..|+||||+|+..|+.+++++|++++++.+          ..
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~----------~~   69 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM----------AL   69 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCccCCCCCccceehhccccccccccccccccccc----------cc
Confidence            369999999999999999998885    5666 78899999999999999999999999999988744          67


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCcc---ccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHH
Q 038664          112 DEEGNTPLHNAVRKCDGKMAFTMIRKDPEL---ICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLH  188 (464)
Q Consensus       112 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~---~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~  188 (464)
                      ...+.++++.|...++.++++.+.......   .........++++.+.........+.+..............+.++++
T Consensus        70 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  149 (228)
T d1k1aa_          70 DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLI  149 (228)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHH
T ss_pred             ccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHH
Confidence            788999999999999999988887764332   23345567788888888888888888888777666667777888888


Q ss_pred             HHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHH
Q 038664          189 IAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLK  268 (464)
Q Consensus       189 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  268 (464)
                      .|+..+...+++.+++.+.. .+..|..|.||||+|+..|+.+++++|+++|++++ .+|.+|+||||+|+++|+.++||
T Consensus       150 ~a~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n-~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         150 HAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS-LKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HHHHhhhhhhhhhhhhhccc-cccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHhCCCccccC
Confidence            88888888888888888776 67778888888888888888888888888888876 67888888888888888888775

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-30  Score=224.49  Aligned_cols=218  Identities=22%  Similarity=0.270  Sum_probs=147.8

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHhc----ccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccc
Q 038664           71 KSETPMHVAARAGNFGVAKIFMR----PHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYIN  146 (464)
Q Consensus        71 ~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  146 (464)
                      +|+||||+||..|+.++++.|++    .+++          ++.+|..|+||||+|+..|+.+++++|++.++. .+...
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~----------in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~   70 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE----------LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALD   70 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC----------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCC----------CCccCCCCCccceehhccccccccccccccccc-ccccc
Confidence            68999999999999998888875    4444          346788888888888888888888888888777 35667


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhcCcC---cCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHH
Q 038664          147 KAGQSPLSLAIDAGLTHIACCIIKEKLSV---LDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHY  223 (464)
Q Consensus       147 ~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~  223 (464)
                      ..+.++++.|...++.++++.+.......   .+.......++++.+...........+..............+.++++.
T Consensus        71 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  150 (228)
T d1k1aa_          71 RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH  150 (228)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHH
T ss_pred             cccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHH
Confidence            77888888888888888877776654332   233344555666666666666666666665555444455566666666


Q ss_pred             HHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHH
Q 038664          224 AAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV  301 (464)
Q Consensus       224 a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~  301 (464)
                      |+..+..++++.+++.+.... .++..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+++|+.+++
T Consensus       151 a~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad-~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         151 AVENNSLSMVQLLLQHGANVN-AQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             HHHhhhhhhhhhhhhhccccc-cccccCcchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhCCCcccc
Confidence            666666666666666665554 3555666666666666666666666666555 356666666666666666655554

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-30  Score=224.21  Aligned_cols=200  Identities=19%  Similarity=0.195  Sum_probs=144.8

Q ss_pred             CCCchhHHHHhcCCHHH----HHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcC
Q 038664           37 NRDTALHIAARFGHKNV----VMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQD  112 (464)
Q Consensus        37 ~g~t~Lh~A~~~g~~~~----v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  112 (464)
                      +|+||||+|+..|+.++    ++++...+.+ ++.+|.+|+||||+|+..|+.+++++|++.+++..          .+|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~-in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~----------~~d   69 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE----------LRD   69 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCC-CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC----------CCC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCC-cccCCCCCCcccccccccccccccccccccccccc----------ccc
Confidence            58889999998888644    4445555666 77888888899999998888888888888887744          677


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHH
Q 038664          113 EEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAII  192 (464)
Q Consensus       113 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~  192 (464)
                      ..|.|||++++..++.++++.|+..+.......                             ........+.+|||.|+.
T Consensus        70 ~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~-----------------------------~~~~~~~~~~t~l~~a~~  120 (221)
T d1iknd_          70 FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS-----------------------------ILKATNYNGHTCLHLASI  120 (221)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSC-----------------------------GGGCCCTTCCCHHHHHHH
T ss_pred             cccccccccccccccccccchhhhhcccccccc-----------------------------cccccccccchhhhHHhh
Confidence            888888888888888888888877654421000                             012334446677777777


Q ss_pred             cCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHH
Q 038664          193 KSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLH  272 (464)
Q Consensus       193 ~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  272 (464)
                      .++.+++++++..+.......+.+|.||||+|++.|+.+++++|+++|++++ .++..|+||||+|+..++.+++++|++
T Consensus       121 ~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~-~~~~~G~tpl~~A~~~~~~~~~~~l~~  199 (221)
T d1iknd_         121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN-RVTYQGYSPYQLTWGRPSTRIQQQLGQ  199 (221)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC-CCCTTCCCGGGGCTTSSCHHHHHHHHT
T ss_pred             cCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCccc-ccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            7777777777777766333445678888888888888888888888888776 578888888888888888888888887


Q ss_pred             HCCCc
Q 038664          273 SYPDS  277 (464)
Q Consensus       273 ~~~~~  277 (464)
                      ...+.
T Consensus       200 ~~~~~  204 (221)
T d1iknd_         200 LTLEN  204 (221)
T ss_dssp             TSCGG
T ss_pred             cCCcc
Confidence            76553

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=1e-29  Score=216.91  Aligned_cols=207  Identities=25%  Similarity=0.353  Sum_probs=123.9

Q ss_pred             HHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHH
Q 038664           51 KNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKM  130 (464)
Q Consensus        51 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  130 (464)
                      .|+|++|+++|+++....|.+|.||||+||..|+.+++++|++.+++.          +.++..+.++++.++..++...
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~----------n~~~~~~~~~~~~~~~~~~~~~   71 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA----------NSQDNTGRTPLHAAVAADAMGV   71 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc----------cccccccccccccccccccccc
Confidence            477888888888732335778888888888888888888888877763          3566777777777777777666


Q ss_pred             HHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhh
Q 038664          131 AFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLI  210 (464)
Q Consensus       131 ~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  210 (464)
                      ..................+.++.+.+.........+.|...+.+                                   +
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-----------------------------------~  116 (209)
T d1ot8a_          72 FQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-----------------------------------I  116 (209)
T ss_dssp             HHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC-----------------------------------T
T ss_pred             ccccccccccccccccccccccccccccccchhhhhhhhhhccc-----------------------------------c
Confidence            66655554444434444455555555555555555554444443                                   3


Q ss_pred             hhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhH
Q 038664          211 NVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILH  290 (464)
Q Consensus       211 ~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~  290 (464)
                      +..+..|.|||++++..+..++++.+++.+.+.+ ..|..|.||||+|+..|+.+++++|+++|++ ++..|..|+||||
T Consensus       117 ~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~-~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad-~n~~d~~g~Tpl~  194 (209)
T d1ot8a_         117 NAADNSGKTALHWAAAVNNTEAVNILLMHHANRD-AQDDKDETPLFLAAREGSYEASKALLDNFAN-REITDHMDRLPRD  194 (209)
T ss_dssp             TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             cccCCCCCCcchhhcccCcceeeeeecccccccc-ccccccccccchhccccHHHHHHHHHHCCCC-CCCcCCCCCCHHH
Confidence            4444455555555555555555555555555444 3455555555555555555555555555555 3555555556666


Q ss_pred             HHHhcCchHHHHHH
Q 038664          291 LAAQNGHANVVVFI  304 (464)
Q Consensus       291 ~A~~~~~~~~~~~L  304 (464)
                      +|+++|+.+++++|
T Consensus       195 ~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         195 VASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHhhc
Confidence            66666665555554

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.2e-30  Score=222.83  Aligned_cols=197  Identities=19%  Similarity=0.219  Sum_probs=148.3

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHhc----ccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccc
Q 038664           71 KSETPMHVAARAGNFGVAKIFMR----PHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYIN  146 (464)
Q Consensus        71 ~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  146 (464)
                      +|.||||+|+..|+.++++.|++    .+++          ++.+|.+|+||||+|+..|+.+++++|++.+++ +...|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~----------in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d-~~~~d   69 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF----------LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRD   69 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCC----------CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCC----------cccCCCCCCcccccccccccccccccccccccc-ccccc
Confidence            48888888888888655554443    3433          346777788888888888888888888777776 35567


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHH
Q 038664          147 KAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAA  226 (464)
Q Consensus       147 ~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~  226 (464)
                      ..|.+||+.++..++.++++.+++.+....                             ...........|.||||.|+.
T Consensus        70 ~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~t~l~~a~~  120 (221)
T d1iknd_          70 FRGNTPLHLACEQGCLASVGVLTQSCTTPH-----------------------------LHSILKATNYNGHTCLHLASI  120 (221)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHSTTTTS-----------------------------SSCGGGCCCTTCCCHHHHHHH
T ss_pred             cccccccccccccccccccchhhhhccccc-----------------------------ccccccccccccchhhhHHhh
Confidence            777777777777777777777766544321                             011134445678899999999


Q ss_pred             cCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhc
Q 038664          227 LGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK  306 (464)
Q Consensus       227 ~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~  306 (464)
                      .++.+++++|+..+...+...+.+|.||||+|++.|+.+++++|+++|++ ++.+|.+|+||||+|+..++.+++++|++
T Consensus       121 ~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad-~~~~~~~G~tpl~~A~~~~~~~~~~~l~~  199 (221)
T d1iknd_         121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQ  199 (221)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHT
T ss_pred             cCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            99999999999988887766667788888888888888888888888888 58888888888888888888888888877


Q ss_pred             Cc
Q 038664          307 LP  308 (464)
Q Consensus       307 ~~  308 (464)
                      ..
T Consensus       200 ~~  201 (221)
T d1iknd_         200 LT  201 (221)
T ss_dssp             TS
T ss_pred             cC
Confidence            64

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=2.5e-29  Score=214.47  Aligned_cols=207  Identities=21%  Similarity=0.237  Sum_probs=184.2

Q ss_pred             HHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCc
Q 038664          128 GKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKR  207 (464)
Q Consensus       128 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~  207 (464)
                      .|++++|+++|+++....|.+|.||||+|+..|+.+++++|++.+..+ +..+..+.++++.++..++............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccccccccccccccc
Confidence            489999999999965557899999999999999999999999999887 8888999999999999999888777776665


Q ss_pred             hhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCc
Q 038664          208 DLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRN  287 (464)
Q Consensus       208 ~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  287 (464)
                      .........+.++.+.+.........+.|...+.+.. .++..|+|||+.++..+..++++.+++.+.+ ++..|..|.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~-~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g~T  158 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN-AADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDET  158 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCC
T ss_pred             cccccccccccccccccccccchhhhhhhhhhccccc-ccCCCCCCcchhhcccCcceeeeeecccccc-cccccccccc
Confidence            5455667778899999999999999999999988877 5788899999999999999999999999888 5888999999


Q ss_pred             hhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHH
Q 038664          288 ILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL  340 (464)
Q Consensus       288 ~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  340 (464)
                      |||+|+.+|+.+++++|++.   |++++.+|..|+||||+|+++|+.++|++|
T Consensus       159 pL~~A~~~g~~~~v~~Ll~~---gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         159 PLFLAAREGSYEASKALLDN---FANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccchhccccHHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999999987   788999999999999999999999999876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=2.4e-32  Score=250.61  Aligned_cols=250  Identities=12%  Similarity=0.040  Sum_probs=158.7

Q ss_pred             cccCCCCchhHHHHhcCCHHHHHH---HHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHh
Q 038664           33 DMSQNRDTALHIAARFGHKNVVME---ILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILR  109 (464)
Q Consensus        33 ~~~~~g~t~Lh~A~~~g~~~~v~~---Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  109 (464)
                      .++..|.||||+||.+|+.+++++   |++.+++ ++.++.+|+||||+||+.|+.++|++|++.|++.+        ..
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~-in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~--------~~  155 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI--------MA  155 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS-CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTH--------HH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc--------cc
Confidence            456688899999999999877765   6777877 78888999999999999999999999999888743        22


Q ss_pred             hcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccc--cccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHH
Q 038664          110 KQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELI--CYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLL  187 (464)
Q Consensus       110 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~--~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l  187 (464)
                      ..+.+|.||||+|+..|+.+++++|++.++...  +..+.++.+|++.|+..|+.+++++|++.+++. +       ++.
T Consensus       156 ~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~-~-------~~~  227 (346)
T d2ajaa1         156 MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML-A-------YAE  227 (346)
T ss_dssp             HHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHH-H-------HHH
T ss_pred             ccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCc-c-------hHH
Confidence            334568899999999999999999999887642  233455667777788888888888888766543 1       122


Q ss_pred             HHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHH
Q 038664          188 HIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLL  267 (464)
Q Consensus       188 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  267 (464)
                      +.+...++..+                    ++++.+...+..+...                   +++.+...|..+++
T Consensus       228 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~-------------------~l~~a~~~~~~~~~  268 (346)
T d2ajaa1         228 IHEFEYGEKYV--------------------NPFIARHVNRLKEMHD-------------------AFKLSNPDGVFDLV  268 (346)
T ss_dssp             HCTTTTTTTTH--------------------HHHHHHHHHHHHHHHT-------------------TTTTTSSSSCCCCS
T ss_pred             HHHHHcCcHhh--------------------hHHHHHhhccchHHHH-------------------HHHHhcccccHhHH
Confidence            22222222222                    2333332222222221                   22222222221111


Q ss_pred             HHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhh--hhhccCCCCCcHHHHHHHcCCchHHHHHHhccc
Q 038664          268 KRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIED--MINSSDLEGNTPLHLAAINNHFNIVLILARNMR  345 (464)
Q Consensus       268 ~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~--~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~  345 (464)
                      ..-       .......+.++++.++..++.+++++|++.+....  ..+..+.+|+||||+|++.|+.++|++||+-++
T Consensus       269 ~~~-------~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~p~  341 (346)
T d2ajaa1         269 TKS-------ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS  341 (346)
T ss_dssp             SHH-------HHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHH
T ss_pred             hcc-------cccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCCCC
Confidence            100       01112223467777887888888888877643322  233455678888888888888888888886543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=1e-29  Score=233.01  Aligned_cols=266  Identities=12%  Similarity=-0.006  Sum_probs=181.1

Q ss_pred             hCCHHHHHHHhcccCCCCC-CcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHH---HHHhCCccccccccCCCcHHHHHH
Q 038664           82 AGNFGVAKIFMRPHGNGNN-TGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFT---MIRKDPELICYINKAGQSPLSLAI  157 (464)
Q Consensus        82 ~g~~~~v~~Ll~~~~~~~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~---Ll~~~~~~~~~~~~~g~t~l~~A~  157 (464)
                      .+..++.+++...+++... .......+..++..|.|||++|+.+|+.+++++   |++.+++ ++..+.+|.||||+|+
T Consensus        56 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~-in~~~~~g~taL~~Aa  134 (346)
T d2ajaa1          56 KNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-VKVIQAENYQAFRLAA  134 (346)
T ss_dssp             SHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS-CC--CHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc-ccccCCCCCCHHHHHH
Confidence            3345566666554433221 112334466788899999999999999877665   6777776 5677889999999999


Q ss_pred             HcCCHHHHHHHHHhcCcCcCCC--CCCCCCHHHHHHHcCCHHHHHHHHHhCchh--hhhhcCCCCcHHHHHHHcCCHHHH
Q 038664          158 DAGLTHIACCIIKEKLSVLDHR--GPNDLTLLHIAIIKSNFVVMAKILEAKRDL--INVLDKRDRNPLHYAAALGHFEIA  233 (464)
Q Consensus       158 ~~g~~~~~~~Ll~~~~~~~~~~--~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~--~~~~~~~g~t~L~~a~~~~~~~~v  233 (464)
                      +.|+.+++++|++.++++ +..  +..|.||||+|+.+|+.+++++|++.++..  .+..+.++.||++.|+++|+.+++
T Consensus       135 ~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv  213 (346)
T d2ajaa1         135 ENGHLHVLNRLCELAPTE-IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI  213 (346)
T ss_dssp             HTTCHHHHHHHHHSCTTT-HHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred             HCCCHHHHHHHHHcCCCc-cccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHH
Confidence            999999999999988876 333  345789999999999999999999988653  344456677888888899999999


Q ss_pred             HHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhh
Q 038664          234 CRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDM  313 (464)
Q Consensus       234 ~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~  313 (464)
                      ++|++.|++..        ++.+.+...++..+..+++.....     ...+.++++.+...+..+++..         .
T Consensus       214 ~~Ll~~ga~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~a~~~~~~~~~~~---------~  271 (346)
T d2ajaa1         214 NFLLDCPVMLA--------YAEIHEFEYGEKYVNPFIARHVNR-----LKEMHDAFKLSNPDGVFDLVTK---------S  271 (346)
T ss_dssp             HHHTTSHHHHH--------HHHHCTTTTTTTTHHHHHHHHHHH-----HHHHHTTTTTTSSSSCCCCSSH---------H
T ss_pred             HHHHhCCCCcc--------hHHHHHHHcCcHhhhHHHHHhhcc-----chHHHHHHHHhcccccHhHHhc---------c
Confidence            99998887654        355556666666666655543211     1223334444444443322110         0


Q ss_pred             hhccCCCCCcHHHHHHHcCCchHHHHHHhcccc----ccccccccCCChHHhhccCchhhHH
Q 038664          314 INSSDLEGNTPLHLAAINNHFNIVLILARNMRV----NIRATNEKKQTALAIVQPSLHQNDI  371 (464)
Q Consensus       314 ~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~----d~~~~n~~g~t~l~~a~~~~~~~~~  371 (464)
                      .......+.++|+.|+..++.+++++|++....    +.+..+.+|.|||++|++.|+.+.+
T Consensus       272 ~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v  333 (346)
T d2ajaa1         272 ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGAC  333 (346)
T ss_dssp             HHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHH
T ss_pred             cccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHH
Confidence            111112245899999999999999999975322    3445567899999999999987764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.5e-26  Score=185.51  Aligned_cols=152  Identities=22%  Similarity=0.329  Sum_probs=134.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCH
Q 038664            6 RVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNF   85 (464)
Q Consensus         6 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~   85 (464)
                      ..|+.||..|+++.|+++|+.++.+++..|..|+||||+|+ .|+.+++++|++++.+ ++..+..|.+|+++++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccc-ccccccccccccccccccccc
Confidence            56999999999999999999888889989999999999886 5889999999999988 777888999999999999999


Q ss_pred             HHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHH
Q 038664           86 GVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIA  165 (464)
Q Consensus        86 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~  165 (464)
                      ++++++++.+.+.          +.++..|.||||+|+..|+.+++++|+ .+++ ++.+|..|+||||+|+..|+.+++
T Consensus        82 ~~~~~~l~~~~~~----------n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~-~~~~d~~G~TpL~~A~~~g~~~iv  149 (156)
T d1bd8a_          82 DTLKVLVEHGADV----------NVPDGTGALPIHLAVQEGHTAVVSFLA-AESD-LHRRDARGLTPLELALQRGAQDLV  149 (156)
T ss_dssp             HHHHHHHHTTCCS----------CCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC-TTCCCTTSCCHHHHHHHSCCHHHH
T ss_pred             ccccccccccccc----------ccccCCCCeeecccccccccccccccc-cccc-ccccCCCCCCHHHHHHHcCCHHHH
Confidence            9999999988774          367888999999999999999999887 5666 467788999999999999999999


Q ss_pred             HHHHHh
Q 038664          166 CCIIKE  171 (464)
Q Consensus       166 ~~Ll~~  171 (464)
                      ++|+++
T Consensus       150 ~~Ll~h  155 (156)
T d1bd8a_         150 DILQGH  155 (156)
T ss_dssp             HHHHTT
T ss_pred             HHHHhh
Confidence            998875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3e-26  Score=185.34  Aligned_cols=152  Identities=21%  Similarity=0.244  Sum_probs=77.3

Q ss_pred             chhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHH
Q 038664           40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPL  119 (464)
Q Consensus        40 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L  119 (464)
                      ++||+||..|+.++|++|+++|++ ++.+|.+|.||||+|+ .|+.+++++|++++++.          +.++..+.+++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d-~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~----------~~~~~~~~~~l   70 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP----------DLKDRTGFAVI   70 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT----------TCCCTTSCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-cCccCCcccccccccc-ccccccccccccccccc----------ccccccCcccc
Confidence            455666666666666666665555 4555555666665554 45555566555555542          24455555555


Q ss_pred             HHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHH
Q 038664          120 HNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVM  199 (464)
Q Consensus       120 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  199 (464)
                      +.++..++.+.++.++..+.. .+..+..|.+|+++|+..++.+++++|++++....+.++..|.||||+|++.++.+++
T Consensus        71 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv  149 (156)
T d1ihba_          71 HDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV  149 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHH
Confidence            555555555555555555444 2333444444444444444444444444444433344444444444444444444444


Q ss_pred             HHHHH
Q 038664          200 AKILE  204 (464)
Q Consensus       200 ~~ll~  204 (464)
                      ++|++
T Consensus       150 ~~Ll~  154 (156)
T d1ihba_         150 SLMQA  154 (156)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            44443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.2e-26  Score=185.83  Aligned_cols=152  Identities=28%  Similarity=0.365  Sum_probs=131.3

Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcH
Q 038664          185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKL  264 (464)
Q Consensus       185 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  264 (464)
                      ..|+.|+..|+.++++.|++.++..++..|..|+||||+|+ .++.+++++|++++.+++ ..+..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~-~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN-VQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccc-ccccccccccccccccccc
Confidence            35888888889999988888766668888889999999876 478899999999888876 5677889999999999999


Q ss_pred             HHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhc
Q 038664          265 SLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARN  343 (464)
Q Consensus       265 ~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  343 (464)
                      ++++.+++.+++ ++.+|..|.||||+|++.|+.+++++|+.    +++++.+|.+|+||||+|++.|+.+++++|+++
T Consensus        82 ~~~~~~l~~~~~-~n~~~~~~~t~L~~A~~~~~~~i~~~L~~----~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAA----ESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHT----TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccc-cccccCCCCeeeccccccccccccccccc----cccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999998887 58889999999999999999999998874    567888999999999999999999999999875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.8e-25  Score=180.69  Aligned_cols=154  Identities=19%  Similarity=0.238  Sum_probs=143.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCH
Q 038664            6 RVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNF   85 (464)
Q Consensus         6 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~   85 (464)
                      .+||.||..|+.+.++.|++. |.+++..|.+|.||||+|+ .|+.+++++|++++++ ++..+..|.+|++.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~-g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~-~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCcCccCCcccccccccc-cccccccccccccccc-cccccccCccccccccccccc
Confidence            589999999999999998875 5689999999999999886 7999999999999999 788999999999999999999


Q ss_pred             HHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHH
Q 038664           86 GVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIA  165 (464)
Q Consensus        86 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~  165 (464)
                      +.++.|++.+.+.          +..+..|.+|||+|+..++.+++++|+++++.....+|..|.||||+|+..++.+++
T Consensus        80 ~~~~~l~~~~~~~----------~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv  149 (156)
T d1ihba_          80 DTLQTLLEFQADV----------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV  149 (156)
T ss_dssp             HHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccccccccccc----------cccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHH
Confidence            9999999988773          478899999999999999999999999999876788999999999999999999999


Q ss_pred             HHHHHhc
Q 038664          166 CCIIKEK  172 (464)
Q Consensus       166 ~~Ll~~~  172 (464)
                      ++|+++|
T Consensus       150 ~~Ll~~G  156 (156)
T d1ihba_         150 SLMQANG  156 (156)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhcC
Confidence            9999875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.3e-26  Score=208.50  Aligned_cols=178  Identities=15%  Similarity=0.049  Sum_probs=100.2

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCH-------HHHHHHhhcCCCccccccCCCC
Q 038664          180 GPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHF-------EIACRLSDEDDTLAYERDCNGQ  252 (464)
Q Consensus       180 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~-------~~v~~Ll~~~~~~~~~~~~~g~  252 (464)
                      |..|.||||+|+..|+.++++.|++++++ ++.+|..|+||||.|+..++.       ++++++...    ...+|..|+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~----~~~~d~~g~  178 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC----LILEDSMNR  178 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG----GGEECTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh----hhhcccccC
Confidence            44455555555555555555555555544 455555555555555544321       222222211    113444555


Q ss_pred             CcccccccCC----c--------HHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCC
Q 038664          253 SPLHLASENG----K--------LSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLE  320 (464)
Q Consensus       253 tpL~~A~~~g----~--------~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~  320 (464)
                      ||||.++..+    .        ..++..+++.+..........+.++++.+........+..+.........+|.+|.+
T Consensus       179 t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~  258 (301)
T d1sw6a_         179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN  258 (301)
T ss_dssp             CHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTT
T ss_pred             CHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCC
Confidence            5555444322    1        124455666666655566667777777777666655554432222224458999999


Q ss_pred             CCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhc
Q 038664          321 GNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQ  363 (464)
Q Consensus       321 g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~  363 (464)
                      |+||||+|++.|+.++|++|++. |+|++.+|+.|+||+++|.
T Consensus       259 G~TpLh~A~~~g~~~iv~~Ll~~-GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHcC
Confidence            99999999999999999999976 9999999999999999996

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=3.1e-24  Score=172.76  Aligned_cols=147  Identities=18%  Similarity=0.253  Sum_probs=82.9

Q ss_pred             chhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHH
Q 038664           40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPL  119 (464)
Q Consensus        40 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L  119 (464)
                      ||||.||+.|+.++|++|+++|++ ++ .|..|.||||+|+..++.++++.++.......          ..+..+.+++
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~-~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~   71 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD----------ARTKVDRTPL   71 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT----------CCCTTCCCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCC-cc-cccCCCcccccccccccccccccccccccccc----------cccccccccc
Confidence            666666666666666666666665 22 46666666666666666666666665444322          3344455556


Q ss_pred             HHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHH
Q 038664          120 HNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVM  199 (464)
Q Consensus       120 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  199 (464)
                      +.++...+.+++++++..+.+ ....+..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+.+|+.+++
T Consensus        72 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~-~~~d~~g~Tpl~~A~~~g~~eiv  149 (153)
T d1awcb_          72 HMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLA  149 (153)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccccccceeeecccccCCc-cccccccCchHHHhhhhcchhheeeeccccccCC-cccCCCCCCHHHHHHHcCCHHHH
Confidence            666666666666655555554 2344555555555555555555555555555544 44455555555555555555554


Q ss_pred             H
Q 038664          200 A  200 (464)
Q Consensus       200 ~  200 (464)
                      +
T Consensus       150 ~  150 (153)
T d1awcb_         150 E  150 (153)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=6.6e-24  Score=170.77  Aligned_cols=149  Identities=21%  Similarity=0.227  Sum_probs=98.7

Q ss_pred             CHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHH
Q 038664           74 TPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPL  153 (464)
Q Consensus        74 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  153 (464)
                      ||||.||+.|+.++|++|+++|++..           .+..|.||||+|+..++.++++.++...... ...+..+.+++
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-----------~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   71 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-----------TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPL   71 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-----------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-----------cccCCCccccccccccccccccccccccccc-ccccccccccc
Confidence            77777777777777777777776532           4666777777777777777777776665553 34455566666


Q ss_pred             HHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHH
Q 038664          154 SLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIA  233 (464)
Q Consensus       154 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v  233 (464)
                      +.++...+.+.+++++..+.+. ...+..|.||||+|+..|+.+++++|++.+.+ ++..|.+|.||||+|+.+|+.+++
T Consensus        72 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad-~~~~d~~g~Tpl~~A~~~g~~eiv  149 (153)
T d1awcb_          72 HMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLA  149 (153)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccccccceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccccC-CcccCCCCCCHHHHHHHcCCHHHH
Confidence            6666666676666666666654 55566666666666666666666666666655 566666666666666666666666


Q ss_pred             HHH
Q 038664          234 CRL  236 (464)
Q Consensus       234 ~~L  236 (464)
                      ++|
T Consensus       150 ~lL  152 (153)
T d1awcb_         150 EIL  152 (153)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            554

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=9.4e-25  Score=196.23  Aligned_cols=176  Identities=15%  Similarity=0.163  Sum_probs=96.6

Q ss_pred             ccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCH-------HHHHHHHHhCCcc
Q 038664           69 NHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDG-------KMAFTMIRKDPEL  141 (464)
Q Consensus        69 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-------~~~~~Ll~~~~~~  141 (464)
                      |.+|+||||+||..|+.++|++|+++|++.          +.+|..|+||||.|+..++.       ++++++.    ..
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~----------~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~----~~  169 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNR----------LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY----PC  169 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCT----------TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG----GG
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC----------CcCCcccccHHHHhhhcccchhhhhHHHHHHHHh----hh
Confidence            778888888888888888888888888773          46788888888888876542       2333332    22


Q ss_pred             ccccccCCCcHHHHHHHcCC----HH--------HHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHH--hCc
Q 038664          142 ICYINKAGQSPLSLAIDAGL----TH--------IACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILE--AKR  207 (464)
Q Consensus       142 ~~~~~~~g~t~l~~A~~~g~----~~--------~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~--~~~  207 (464)
                      ....|..|+||||+++..+.    ..        ++.++.+.+............++++.+...........+..  ...
T Consensus       170 ~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (301)
T d1sw6a_         170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA  249 (301)
T ss_dssp             GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH
T ss_pred             hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh
Confidence            34567778888887765443    12        23344444443333333333444443333222222211100  001


Q ss_pred             hhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccc
Q 038664          208 DLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLAS  259 (464)
Q Consensus       208 ~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~  259 (464)
                      ..++.+|.+|+||||+|++.|+.+++++|++.|++++ .+|..|.|||++|+
T Consensus       250 ~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~-~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         250 NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF-IANKSGLRPVDFGA  300 (301)
T ss_dssp             HTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT-CCCTTSCCGGGGTC
T ss_pred             cCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHcC
Confidence            1145566666777777777777777777776666665 46666666666664

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=7.5e-25  Score=166.95  Aligned_cols=108  Identities=24%  Similarity=0.258  Sum_probs=99.8

Q ss_pred             CCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHc
Q 038664          252 QSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAIN  331 (464)
Q Consensus       252 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~  331 (464)
                      .|||++|+++|+.+++++|+++|++ ++.+|..|+||||+|+.+++.+++++|++.   +.+++.+|..|+||||+|+++
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~---g~din~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLK---GADINAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHS---SCTTTCCSSSCSCHHHHHHTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc-cccccccccccccccccccccccccccccc---cceeeecccccccchhhhhhc
Confidence            3789999999999999999999888 588999999999999999999999999987   688999999999999999999


Q ss_pred             CCchHHHHHHhccccccccccccCCChHHhhcc
Q 038664          332 NHFNIVLILARNMRVNIRATNEKKQTALAIVQP  364 (464)
Q Consensus       332 ~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~  364 (464)
                      |+.+++++|+++ |+|++.+|++|+||+++|..
T Consensus        79 ~~~~~v~~Ll~~-Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          79 GHVSCVKLLLSK-GADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             TCCHHHHHHHTT-CCCSSSSSSSTCCCCCTCSS
T ss_pred             Cchhhhhhhhcc-cccceeeCCCCCCHHHHHhH
Confidence            999999999976 99999999999999999963

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.8e-24  Score=164.35  Aligned_cols=120  Identities=21%  Similarity=0.243  Sum_probs=109.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCC-chhHHHHhc
Q 038664          217 DRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNR-NILHLAAQN  295 (464)
Q Consensus       217 g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~L~~A~~~  295 (464)
                      +.++||+|++.|+.+++++|+++|++++ .++..|.||+|.|+ .|+.+++++|++++++ ++..+..+. ||||+|+++
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n-~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccc-cccccccccccccc-cccccccccccccccc-ccccccccccccccccccc
Confidence            5689999999999999999999999887 68899999999775 6999999999999988 488888776 699999999


Q ss_pred             CchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHh
Q 038664          296 GHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILAR  342 (464)
Q Consensus       296 ~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  342 (464)
                      |+.+++++|++.   +.+++.+|..|+||||+|+++|+.+++++|++
T Consensus        80 g~~~~v~~Ll~~---ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRA---GARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHH---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccc---ccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999987   78899999999999999999999999999984

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2e-23  Score=160.86  Aligned_cols=117  Identities=22%  Similarity=0.252  Sum_probs=56.0

Q ss_pred             chhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCC-cH
Q 038664           40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGN-TP  118 (464)
Q Consensus        40 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~-t~  118 (464)
                      ++||+||..|+.++|++|+++|++ ++.++..|.||||+|+ .|+.+++++|++++++.+          .++..+. ||
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll~~gad-~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~----------~~~~~~~~~~   72 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN----------CADPATLTRP   72 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC----------CCCTTTCCCH
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCc-cccccccccccccccc-cccccccccccccccccc----------cccccccccc
Confidence            445555555555555555555544 4444555555554432 345555555555444422          2333332 35


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHH
Q 038664          119 LHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCII  169 (464)
Q Consensus       119 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll  169 (464)
                      ||+|+..|+.+++++|++.|++ .+.+|..|+||||+|++.|+.+++++|+
T Consensus        73 L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          73 VHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             cccccccccccccccccccccc-cccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            5555555555555555555444 2344445555555555555555554443

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=3.4e-24  Score=163.28  Aligned_cols=106  Identities=23%  Similarity=0.279  Sum_probs=94.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCc
Q 038664          218 RNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGH  297 (464)
Q Consensus       218 ~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~  297 (464)
                      .|||++|++.|+.+++++|+++|++++ .++..|+||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+.+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n-~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d-in~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCC-CCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT-TTCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccc-cccccccccccccccccccccccccccccce-eeecccccccchhhhhhcCc
Confidence            378999999999999999999988877 5788899999999999999999999998888 58889999999999999999


Q ss_pred             hHHHHHHhcCcchhhhhhccCCCCCcHHHHH
Q 038664          298 ANVVVFISKLPEIEDMINSSDLEGNTPLHLA  328 (464)
Q Consensus       298 ~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A  328 (464)
                      .+++++|++.   |++++.+|.+|+||||+|
T Consensus        81 ~~~v~~Ll~~---Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          81 VSCVKLLLSK---GADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             CHHHHHHHTT---CCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhhhcc---cccceeeCCCCCCHHHHH
Confidence            9999999887   678899999999999988

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=5e-22  Score=157.87  Aligned_cols=123  Identities=19%  Similarity=0.188  Sum_probs=107.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcCCCcc------cccCCCCchhHHHHhc---CCHHHHHHHHHhCCccccccccCCCCHHH
Q 038664            7 VLFRALRRGDAATVRESARLNGNGIL------DMSQNRDTALHIAARF---GHKNVVMEILELRPDLVSVENHKSETPMH   77 (464)
Q Consensus         7 ~L~~A~~~g~~~~~~~ll~~~~~~~~------~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   77 (464)
                      .|+.|++.+|++.+.+++.++. +++      ..+..|+||||+|+..   |+.++|++|+++|++ ++.+|..|+||||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~-d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-in~~d~~g~TpLh   86 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGV-DLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTC-CTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCC-CcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-hhhhhhhhccccc
Confidence            5789999999999999887653 443      2367799999999974   678999999999998 7889999999999


Q ss_pred             HHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcc
Q 038664           78 VAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPEL  141 (464)
Q Consensus        78 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  141 (464)
                      +|+..|+.+++++|+++|++.          +.+|..|.||||+|+..|+.+++++|++.+...
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~----------~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASI----------EIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cccccccccccccccccCccc----------cccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            999999999999999999884          478999999999999999999999999976553

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.2e-23  Score=159.11  Aligned_cols=89  Identities=22%  Similarity=0.257  Sum_probs=46.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHH
Q 038664            7 VLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFG   86 (464)
Q Consensus         7 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~   86 (464)
                      .|+.||+.|+.+.++.+++. +.+++.++.+|+||||+|+..|+.+++++|++.+++ ++..|.+|+||||+|+..|+.+
T Consensus         4 lL~~A~~~G~~~~v~~Ll~~-g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           4 LLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHc-CCCccccccccccccccccccccccccccccccccc-cccccccCcccccccchhhHHH
Confidence            34555555555555544443 234555555555555555555555555555555554 4445555555555555555555


Q ss_pred             HHHHHhcccCC
Q 038664           87 VAKIFMRPHGN   97 (464)
Q Consensus        87 ~v~~Ll~~~~~   97 (464)
                      ++++|+++|++
T Consensus        82 ~v~~Ll~~ga~   92 (130)
T d1ycsb1          82 VCKFLVESGAA   92 (130)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHcCCC
Confidence            55555555544

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.8e-22  Score=155.38  Aligned_cols=123  Identities=20%  Similarity=0.201  Sum_probs=111.8

Q ss_pred             chhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHH
Q 038664           40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPL  119 (464)
Q Consensus        40 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L  119 (464)
                      ++|+.||..|+.++|++|+++|++ ++.+|.+|+||||+|+..|+.+++++|++.+++.          +.+|.+|+|||
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d-~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~----------~~~d~~g~tpL   71 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV----------NAADSDGWTPL   71 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT----------TCCCTTCCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC-cccccccccccccccccccccccccccccccccc----------ccccccCcccc
Confidence            689999999999999999999999 7899999999999999999999999999998874          47899999999


Q ss_pred             HHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHH--HHcCCHHHHHHHHHhcC
Q 038664          120 HNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLA--IDAGLTHIACCIIKEKL  173 (464)
Q Consensus       120 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A--~~~g~~~~~~~Ll~~~~  173 (464)
                      |+|+.+|+.+++++|+++|+++.......+.+|++++  ...|+.+++++|+....
T Consensus        72 h~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          72 HCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHH
Confidence            9999999999999999999998876667788887765  57788999999987543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=4.1e-20  Score=146.69  Aligned_cols=126  Identities=20%  Similarity=0.279  Sum_probs=109.2

Q ss_pred             hhHHHHhcCCHHHHHHHHHhCCcccc-----ccccCCCCHHHHHHHh---CCHHHHHHHhcccCCCCCCcchHHHHhhcC
Q 038664           41 ALHIAARFGHKNVVMEILELRPDLVS-----VENHKSETPMHVAARA---GNFGVAKIFMRPHGNGNNTGTFDDILRKQD  112 (464)
Q Consensus        41 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~-----~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  112 (464)
                      .|+.|+..++...+..++..|.++..     ..+..|+||||+|++.   |+.+++++|+++|++          ++.+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad----------in~~d   78 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN----------LDKQT   78 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC----------TTCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC----------hhhhh
Confidence            46788899999999999998877322     2367899999999985   678999999999988          45789


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcC
Q 038664          113 EEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLD  177 (464)
Q Consensus       113 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~  177 (464)
                      ..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|++.|+.+++++|++.+....+
T Consensus        79 ~~g~TpLh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~~  142 (154)
T d1dcqa1          79 GKGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSGRFN  142 (154)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred             hhhccccccccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999999984 68899999999999999999999999998766533