Citrus Sinensis ID: 038676

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
LPIIDFSKPNLKPGTPEWDSVKSHVRKALEDYGCFEALFNKVPEEILKAVFGALEELFDLPLRTKMRNISKKPFHGYVGQYPQVPLYESMGIDDANVKEKVESMTNILWPEGNKSFCKTIQSFSEQVSELDQTIRRMILESLGLEKYMDEHMNSTSYLLRVMKYKGPETTEKKLGLNAHTDKNIVTILYQNQVEGLELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLYSPYHRVMMTGIETRYSTGFFSIPKAGYKIEAPEELVDEEHPLLFKPFDHFEFLEFYYTEAGQRAESALKTYCGV
ccEEEccccccccccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHcccccccccccccccccccccEEEccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccEEEEEccccccccccccccccccccccEEEEEccccccEEEEcccccEEEEccccccEEEEEHHHHHHHHHcccccccccEEEEcccccEEEEEEccccccccEEEccccccccccccccccccHHHHHHHHHHHccccccccccccccc
ccEEEcccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEEcccccccEccEEHccccccccHHHcHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccEEEEEcccccccccccccccccccccEEEEEEccccccEEEEEEcccEEEcccccccEEEEEEcccEEEEEcccEccEEEEEEEEccccEEEEEEEEccccccEEcccHHHcccccccccccccHHHHHHHHHHHcccccccHHHHHccc
lpiidfskpnlkpgtpewdsVKSHVRKALEDYGCFEALFNKVPEEILKAVFGALEElfdlplrtkmrniskkpfhgyvgqypqvplyesmgiddanVKEKVESMTNilwpegnksFCKTIQSFSEQVSELDQTIRRMILESLGLEKYMDEHMNSTSYLLRVMKykgpettekklglnahtdKNIVTILYQNQVEGLelqtkngewinvkpssphsfIAMIGDSLyawtngqlyspyhrVMMTGIEtrystgffsipkagykieapeelvdeehpllfkpfdhfefLEFYYTEAGQRAESALKTYCGV
lpiidfskpnlkpgtpewdSVKSHVRKALEDYGCFEALFNKVPEEILKAVFGALEELFDLPLRTKMrniskkpfhgyvGQYPQVPLYESMGIDDANVKEKVESMTNILWPEGNKSFCKTIQSFSEQVSELDQTIRRMILESLGLEKYMDEHMNSTSYLLRVMKYKGPEttekklglnahtdkNIVTILYQNQVEGLELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLYSPYHRVMMTGIETRYSTGFFSIPKAGYKIEAPEELVDEEHPLLFKPFDHFEFLEFYYTEAGQRAESALKTYCGV
LPIIDFSKPNLKPGTPEWDSVKSHVRKALEDYGCFEALFNKVPEEILKAVFGALEELFDLPLRTKMRNISKKPFHGYVGQYPQVPLYESMGIDDANVKEKVESMTNILWPEGNKSFCKTIQSFSEQVSELDQTIRRMILESLGLEKYMDEHMNSTSYLLRVMKYKGPETTEKKLGLNAHTDKNIVTILYQNQVEGLELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLYSPYHRVMMTGIETRYSTGFFSIPKAGYKIEAPEELVDEEHPLLFKPFDHFEFLEFYYTEAGQRAESALKTYCGV
**********************SHVRKALEDYGCFEALFNKVPEEILKAVFGALEELFDLPLRTKMRNISKKPFHGYVGQYPQVPLYESMGIDDANVKEKVESMTNILWPEGNKSFCKTIQSFSEQVSELDQTIRRMILESLGLEKYMDEHMNSTSYLLRVMKYKGPETTEKKLGLNAHTDKNIVTILYQNQVEGLELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLYSPYHRVMMTGIETRYSTGFFSIPKAGYKIEAPEELVDEEHPLLFKPFDHFEFLEFYYTEAGQ************
LPIIDFSKPNLK***PEWDSVKSHVRKALEDYGCFEALFNKVPEEILKAVFGALEELFDLPLRTK**********GYVGQYPQVPLYESMGIDDANVKEKVESMTNILWPEGNKSFCKTIQSFSEQVSELDQTIRRMILESLGLEKYMDEHMNSTSYLLRVMKYKGPETTEKKLGLNAHTDKNIVTILYQNQVEGLELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLYSPYHRVMMTGIETRYSTGFFSIPKAGYKIEAPEELVDEEHPLLFKPFDHFEFLEFYYTEAGQRAESALKTYCGV
LPIIDFSKPNLKPGTPEWDSVKSHVRKALEDYGCFEALFNKVPEEILKAVFGALEELFDLPLRTKMRNISKKPFHGYVGQYPQVPLYESMGIDDANVKEKVESMTNILWPEGNKSFCKTIQSFSEQVSELDQTIRRMILESLGLEKYMDEHMNSTSYLLRVMKYKGPETTEKKLGLNAHTDKNIVTILYQNQVEGLELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLYSPYHRVMMTGIETRYSTGFFSIPKAGYKIEAPEELVDEEHPLLFKPFDHFEFLEFYYTEAGQRAESALKTYCGV
LPIIDFSKPNLKPGTPEWDSVKSHVRKALEDYGCFEALFNKVPEEILKAVFGALEELFDLPLRTKMRNISKKPFHGYVGQYPQVPLYESMGIDDANVKEKVESMTNILWPEGNKSFCKTIQSFSEQVSELDQTIRRMILESLGLEKYMDEHMNSTSYLLRVMKYKGPETTEKKLGLNAHTDKNIVTILYQNQVEGLELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLYSPYHRVMMTGIETRYSTGFFSIPKAGYKIEAPEELVDEEHPLLFKPFDHFEFLEFYYTEAGQRAESALKTYCGV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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LPIIDFSKPNLKPGTPEWDSVKSHVRKALEDYGCFEALFNKVPEEILKAVFGALEELFDLPLRTKMRNISKKPFHGYVGQYPQVPLYESMGIDDANVKEKVESMTNILWPEGNKSFCKTIQSFSEQVSELDQTIRRMILESLGLEKYMDEHMNSTSYLLRVMKYKGPETTEKKLGLNAHTDKNIVTILYQNQVEGLELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLYSPYHRVMMTGIETRYSTGFFSIPKAGYKIEAPEELVDEEHPLLFKPFDHFEFLEFYYTEAGQRAESALKTYCGV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query307 2.2.26 [Sep-21-2011]
Q40062339 2'-deoxymugineic-acid 2'- N/A no 0.859 0.778 0.256 7e-22
Q9C971355 Gibberellin 3-beta-dioxyg no no 0.938 0.811 0.255 8e-21
Q39110377 Gibberellin 20 oxidase 1 no no 0.951 0.774 0.262 5e-20
Q39112380 Gibberellin 20 oxidase 3 no no 0.791 0.639 0.294 1e-19
Q3I409369 Gibberellin 3-beta-dioxyg N/A no 0.824 0.685 0.272 3e-19
Q9SVS8349 Gibberellin 3-beta-dioxyg no no 0.830 0.730 0.246 3e-19
Q39111378 Gibberellin 20 oxidase 2 no no 0.931 0.756 0.254 4e-19
Q3I410370 Gibberellin 3-beta-dioxyg N/A no 0.732 0.608 0.280 6e-19
Q39103358 Gibberellin 3-beta-dioxyg no no 0.899 0.770 0.234 7e-19
P93771372 Gibberellin 20 oxidase 1 no no 0.915 0.755 0.242 8e-19
>sp|Q40062|IDS3_HORVU 2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3 Back     alignment and function desciption
 Score =  104 bits (260), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 139/308 (45%), Gaps = 44/308 (14%)

Query: 1   LPIIDFSKPNLKPGTPEWDSVKSHVRKALEDYGCFEALFNKVPEEILKAVFGALEELFDL 60
           LPIID S           D V+  + +A ++ G F+ + + V +++++ + G  E+ F L
Sbjct: 35  LPIIDLSCGR--------DEVRRSILEAGKELGFFQVVNHGVSKQVMRDMEGMCEQFFHL 86

Query: 61  PLRTKMRNISK---KPFHGYVGQYPQVPLYESMG---------------IDDANVKEKVE 102
           P   K    S+   KP   + G       Y++ G               +DD+ + E   
Sbjct: 87  PAADKASLYSEERHKPNRLFSGAT-----YDTGGEKYWRDCLRLACPFPVDDS-INE--- 137

Query: 103 SMTNILWPEGNKSFCKTIQSFSEQVSELDQTIRRMILESLGLEK-YMDEHMNSTSYLLRV 161
                 WP+  K     I+ F+ Q  ++ + + R++ E +G++  Y +  ++  + +L +
Sbjct: 138 ------WPDTPKGLRDVIEKFTSQTRDVGKELLRLLCEGMGIQADYFEGDLSGGNVILNI 191

Query: 162 MKYKGPETTEKKLGLNAHTDKNIVTILYQNQVEGLELQTKNGEWINVKPSSPHSFIAMIG 221
             Y      +K LG   H D+N++T+L    V GLE+  K G+WI V P+ P++F+   G
Sbjct: 192 NHYPSCPNPDKALGQPPHCDRNLITLLLPGAVNGLEVSYK-GDWIKVDPA-PNAFVVNFG 249

Query: 222 DSLYAWTNGQLYSPYHRVMMTGIETRYSTGFFSIPKAGYKIEAPEELVDEEHPLLFKPFD 281
             L   TNG L S  HR M      R S   F +P     I   +E + +E+P  ++   
Sbjct: 250 QQLEVVTNGLLKSIEHRAMTNSALARTSVATFIMPTQECLIGPAKEFLSKENPPCYRTTM 309

Query: 282 HFEFLEFY 289
             +F+  Y
Sbjct: 310 FRDFMRIY 317
Involved in the biosynthesis of mugineic acid family of phytosiderophores. Hydroxylates the C-2' positions of 2'-deoxymugineic acid (DMA) and 3-epihydroxymugineic acid (epiHDMA). May be involved in boron tolerance.
Hordeum vulgare (taxid: 4513)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2EC: 4
>sp|Q9C971|G3OX4_ARATH Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1 Back     alignment and function description
>sp|Q39110|GAOX1_ARATH Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2 Back     alignment and function description
>sp|Q39112|GAOX3_ARATH Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1 Back     alignment and function description
>sp|Q3I409|G3O23_WHEAT Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SVS8|G3OX3_ARATH Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1 Back     alignment and function description
>sp|Q39111|GAOX2_ARATH Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1 Back     alignment and function description
>sp|Q3I410|G3O22_WHEAT Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q39103|G3OX1_ARATH Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2 Back     alignment and function description
>sp|P93771|GAOX1_ORYSJ Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query307
225442747314 PREDICTED: gibberellin 20 oxidase 3 [Vit 0.996 0.974 0.801 1e-146
147852209314 hypothetical protein VITISV_028512 [Viti 0.996 0.974 0.801 1e-145
224054176314 2-oxoglutarate-dependent dioxygenase [Po 0.996 0.974 0.778 1e-143
255552997314 Gibberellin 20 oxidase, putative [Ricinu 0.996 0.974 0.755 1e-138
15219099317 putative 2-oxoglutarate-dependent dioxyg 0.996 0.965 0.729 1e-134
356519411314 PREDICTED: gibberellin 20 oxidase 1-like 0.996 0.974 0.719 1e-133
356526169314 PREDICTED: LOW QUALITY PROTEIN: gibberel 0.996 0.974 0.723 1e-133
388505512315 unknown [Medicago truncatula] 1.0 0.974 0.700 1e-132
388518733311 unknown [Lotus japonicus] 0.986 0.974 0.703 1e-128
449469106314 PREDICTED: gibberellin 20 oxidase 1-B-li 0.990 0.968 0.665 1e-126
>gi|225442747|ref|XP_002284968.1| PREDICTED: gibberellin 20 oxidase 3 [Vitis vinifera] gi|297743335|emb|CBI36202.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 246/307 (80%), Positives = 278/307 (90%), Gaps = 1/307 (0%)

Query: 1   LPIIDFSKPNLKPGTPEWDSVKSHVRKALEDYGCFEALFNKVPEEILKAVFGALEELFDL 60
           LP+IDFS P LKPGT +W+ VK+ V+KALE+YGCFEA FNKVP ++ KA+FGALEELFDL
Sbjct: 9   LPVIDFSDPELKPGTLQWNLVKAQVQKALEEYGCFEAFFNKVPLDLRKAIFGALEELFDL 68

Query: 61  PLRTKMRNISKKPFHGYVGQYPQVPLYESMGIDDANVKEKVESMTNILWPEGNKSFCKTI 120
           PL+TK+RN SKKP+HGYVGQYP VPLYESMGIDDA V+EK E  T +LWPEGN +FCKTI
Sbjct: 69  PLQTKLRNSSKKPYHGYVGQYPTVPLYESMGIDDALVQEKAEHFTKLLWPEGNPNFCKTI 128

Query: 121 QSFSEQVSELDQTIRRMILESLGLEKYMDEHMNSTSYLLRVMKYKGPETTEKKLGLNAHT 180
           QSFSEQ+SELD TIRRM+LESLG+EKY+DEHM+ST+YLLRVMKYKGP+TTE KLGLNAHT
Sbjct: 129 QSFSEQLSELDHTIRRMVLESLGMEKYLDEHMDSTNYLLRVMKYKGPQTTETKLGLNAHT 188

Query: 181 DKNIVTILYQNQVEGLELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLYSPYHRVM 240
           DKNIVTILYQNQV+GL +QTK+G+WIN+K  SP SFI MIGDS  AWTNG+L+SPYHRVM
Sbjct: 189 DKNIVTILYQNQVDGLGVQTKDGQWINIK-CSPDSFIIMIGDSFLAWTNGRLHSPYHRVM 247

Query: 241 MTGIETRYSTGFFSIPKAGYKIEAPEELVDEEHPLLFKPFDHFEFLEFYYTEAGQRAESA 300
           MTG E+RYSTG FSIPKAGY I+APEELVDEEHPLLFKPFDH EFL+FYYTEAGQRAESA
Sbjct: 248 MTGNESRYSTGLFSIPKAGYVIKAPEELVDEEHPLLFKPFDHLEFLQFYYTEAGQRAESA 307

Query: 301 LKTYCGV 307
           LKTYCGV
Sbjct: 308 LKTYCGV 314

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147852209|emb|CAN80138.1| hypothetical protein VITISV_028512 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224054176|ref|XP_002298129.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] gi|222845387|gb|EEE82934.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255552997|ref|XP_002517541.1| Gibberellin 20 oxidase, putative [Ricinus communis] gi|223543173|gb|EEF44705.1| Gibberellin 20 oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15219099|ref|NP_175691.1| putative 2-oxoglutarate-dependent dioxygenase [Arabidopsis thaliana] gi|12324633|gb|AAG52269.1|AC019018_6 putative oxidoreductase; 38288-39393 [Arabidopsis thaliana] gi|332194734|gb|AEE32855.1| putative 2-oxoglutarate-dependent dioxygenase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356519411|ref|XP_003528366.1| PREDICTED: gibberellin 20 oxidase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356526169|ref|XP_003531692.1| PREDICTED: LOW QUALITY PROTEIN: gibberellin 20 oxidase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|388505512|gb|AFK40822.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388518733|gb|AFK47428.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|449469106|ref|XP_004152262.1| PREDICTED: gibberellin 20 oxidase 1-B-like [Cucumis sativus] gi|449484307|ref|XP_004156846.1| PREDICTED: gibberellin 20 oxidase 1-B-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query307
TAIR|locus:2011506317 AT1G52820 [Arabidopsis thalian 0.996 0.965 0.729 1.5e-124
TAIR|locus:2139389322 AOP1 [Arabidopsis thaliana (ta 0.973 0.928 0.591 3.3e-95
TAIR|locus:2011576310 AT1G52790 [Arabidopsis thalian 0.990 0.980 0.469 8.5e-81
TAIR|locus:2010474322 AT1G28030 [Arabidopsis thalian 0.986 0.940 0.503 3.4e-77
TAIR|locus:2011581314 AT1G52800 [Arabidopsis thalian 0.990 0.968 0.444 2.7e-75
TAIR|locus:2011586289 AT1G52810 [Arabidopsis thalian 0.596 0.633 0.527 6e-72
TAIR|locus:2139370361 AOP3 [Arabidopsis thaliana (ta 0.442 0.376 0.528 6e-68
TAIR|locus:2034255320 AT1G80320 [Arabidopsis thalian 0.990 0.95 0.392 2.4e-60
TAIR|locus:2196618320 AT1G15540 [Arabidopsis thalian 0.990 0.95 0.372 2.5e-58
TAIR|locus:2121671324 AT4G23340 [Arabidopsis thalian 0.957 0.907 0.265 1e-29
TAIR|locus:2011506 AT1G52820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1224 (435.9 bits), Expect = 1.5e-124, P = 1.5e-124
 Identities = 224/307 (72%), Positives = 267/307 (86%)

Query:     1 LPIIDFSKPNLKPGTPEWDSVKSHVRKALEDYGCFEALFNKVPEEILKAVFGALEELFDL 60
             LP+IDFS  NLKPG PEWD  ++ V+KAL+DYG FEA F+++P E+ K+VFGALEELFDL
Sbjct:    12 LPVIDFSNKNLKPGEPEWDLTRADVQKALQDYGYFEASFDRIPFELRKSVFGALEELFDL 71

Query:    61 PLRTKMRNISKKPFHGYVGQYPQVPLYESMGIDDANVKEKVESMTNILWPEGNKSFCKTI 120
             PL+TK+RN+SKKPFHGYVGQYP VPLYESMGIDD+++ EKV++ T  LWP+GN SF  TI
Sbjct:    72 PLQTKLRNVSKKPFHGYVGQYPMVPLYESMGIDDSDIAEKVDAFTEKLWPQGNISFSTTI 131

Query:   121 QSFSEQVSELDQTIRRMILESLGLEKYMDEHMNSTSYLLRVMKYKGPETTEKKLGLNAHT 180
             QSFS+++SELD TIRRMI+ES GL+KY+DEH++ST+YLLRVMKYKGP+T E K+GLNAHT
Sbjct:   132 QSFSKKLSELDITIRRMIMESFGLDKYIDEHLHSTNYLLRVMKYKGPDTEETKVGLNAHT 191

Query:   181 DKNIVTILYQNQVEGLELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLYSPYHRVM 240
             DKNIVTILYQN VEGLE+QTK+  WI VKP+   SF  MIGDSLYA  NG+L+SPYHRVM
Sbjct:   192 DKNIVTILYQNHVEGLEVQTKDKNWIKVKPTQD-SFTVMIGDSLYALLNGRLHSPYHRVM 250

Query:   241 MTGIETRYSTGFFSIPKAGYKIEAPEELVDEEHPLLFKPFDHFEFLEFYYTEAGQRAESA 300
             MTG ETRYS G FSIPKAG+ + +P+ELVDEEHP LFKPFDH EFL+FYYTEAGQR++SA
Sbjct:   251 MTGTETRYSLGLFSIPKAGHIVSSPDELVDEEHPRLFKPFDHVEFLQFYYTEAGQRSQSA 310

Query:   301 LKTYCGV 307
             LKTYCG+
Sbjct:   311 LKTYCGI 317
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2139389 AOP1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011576 AT1G52790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010474 AT1G28030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011581 AT1G52800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011586 AT1G52810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139370 AOP3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034255 AT1G80320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196618 AT1G15540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121671 AT4G23340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query307
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 3e-37
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-35
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 2e-32
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 2e-31
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 2e-29
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-24
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 3e-24
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 4e-24
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-23
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 2e-23
PLN02947374 PLN02947, PLN02947, oxidoreductase 9e-23
PLN02485329 PLN02485, PLN02485, oxidoreductase 1e-22
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 6e-22
PLN02904357 PLN02904, PLN02904, oxidoreductase 4e-21
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 2e-19
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 2e-19
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 2e-19
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 2e-17
PLN02216357 PLN02216, PLN02216, protein SRG1 4e-17
PLN02997325 PLN02997, PLN02997, flavonol synthase 2e-16
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 4e-16
PLN02704335 PLN02704, PLN02704, flavonol synthase 1e-15
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 1e-14
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 2e-14
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 9e-13
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 3e-12
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 6e-12
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information 
 Score =  134 bits (338), Expect = 3e-37
 Identities = 80/261 (30%), Positives = 129/261 (49%), Gaps = 9/261 (3%)

Query: 25  VRKALEDYGCFEALFNKVPEEILKAVFGALEELFDLPLRTKMRNISKKPFHGYVGQYPQV 84
           +R+A E +GCF  + + V   ++  +   +  LFDLP   K RN       GY+      
Sbjct: 21  LREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTDVILGSGYMAPSEVN 80

Query: 85  PLYESMGIDDANVKEKVESMTNILWPEGNKSFCKTIQSFSEQVSELDQTIRRMILESLGL 144
           PLYE++G+ D    + V++  + L  + +    +TI+ +++ + +L   + R + ESLGL
Sbjct: 81  PLYEALGLYDMASPQAVDTFCSQL--DASPHQRETIKKYAKAIHDLAMDLARKLAESLGL 138

Query: 145 EKYMDEH-MNSTSYLLRVMKYKGPETTEKKLGLNAHTDKNIVTILYQNQ-VEGLE-LQTK 201
              ++           R+ KY     T    G+  HTD   +TIL  ++ V GLE +   
Sbjct: 139 ---VEGDFFQGWPSQFRINKYNFTPETVGSSGVQIHTDSGFLTILQDDENVGGLEVMDPS 195

Query: 202 NGEWINVKPSSPHSFIAMIGDSLYAWTNGQLYSPYHRVMMTGIETRYSTGFFSIPKAGYK 261
           +GE++ V P  P + +  +GD   AW+NG+L +  HRV       R S   F +      
Sbjct: 196 SGEFVPVDPL-PGTLLVNLGDVATAWSNGRLCNVKHRVQCKEATMRISIASFLLGPKDDD 254

Query: 262 IEAPEELVDEEHPLLFKPFDH 282
           +EAP E VD EHP L+KPF +
Sbjct: 255 VEAPPEFVDAEHPRLYKPFTY 275

Length = 300
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 307
PLN02276361 gibberellin 20-oxidase 100.0
PLN02216357 protein SRG1 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02485329 oxidoreductase 100.0
PLN02904357 oxidoreductase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02947374 oxidoreductase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02704335 flavonol synthase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.93
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.9
PLN03176120 flavanone-3-hydroxylase; Provisional 99.8
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.98
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 95.99
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.51
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 93.6
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 91.96
TIGR02466201 conserved hypothetical protein. This family consis 88.08
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 84.15
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information 
Probab=100.00  E-value=2.1e-77  Score=555.18  Aligned_cols=302  Identities=27%  Similarity=0.419  Sum_probs=265.5

Q ss_pred             CCeeeCCCCCCCCCCccHHHHHHHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHhCCChHhhhhccCC-CCCCcccc
Q 038676            1 LPIIDFSKPNLKPGTPEWDSVKSHVRKALEDYGCFEALFNKVPEEILKAVFGALEELFDLPLRTKMRNISK-KPFHGYVG   79 (307)
Q Consensus         1 iPvIDls~~~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~~~~GY~~   79 (307)
                      ||+|||+.+ ...+.+++++++++|.+||++||||||+|||||.++++++++++++||+||.|+|+++... ...+||.+
T Consensus        41 iPvIDls~~-~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~GY~~  119 (361)
T PLN02276         41 VPLIDLGGF-LSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHEYMDAFFKLPLSEKQRAQRKPGESCGYAS  119 (361)
T ss_pred             CCeEEChhh-cCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCccccCc
Confidence            799999985 3333345778999999999999999999999999999999999999999999999998754 36789976


Q ss_pred             cCC-----CCCceeeeccCCCCch---hHHhhhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhhh
Q 038676           80 QYP-----QVPLYESMGIDDANVK---EKVESMTNILWPEGNKSFCKTIQSFSEQVSELDQTIRRMILESLGLE-KYMDE  150 (307)
Q Consensus        80 ~~~-----~~d~~E~~~~~~~~~~---~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~~~~  150 (307)
                      ...     ..|++|.|.++.....   .....+.+|.||+..++||+.+++|+..|.+|+..||++|+++||++ ++|++
T Consensus       120 ~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~  199 (361)
T PLN02276        120 SHTGRFSSKLPWKETLSFGYHADGGSSPVVVDYFKSVLGEDFEQFGKVYQEYCEAMKTLSLKIMELLGISLGVDRGYYRK  199 (361)
T ss_pred             cCccccCCCCCeeeeEEEeccCcccccccchhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            533     2479999988632211   11123345789987789999999999999999999999999999999 78988


Q ss_pred             hccCcccceeeeeecCCCCcccccccccccCCCceEEEeeCCCCceeEEccCCceEEcCCCCCCeEEEEchhHHHHHhcC
Q 038676          151 HMNSTSYLLRVMKYKGPETTEKKLGLNAHTDKNIVTILYQNQVEGLELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNG  230 (307)
Q Consensus       151 ~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lTlL~qd~~~GLqv~~~~g~W~~v~p~~~g~~vVnvGd~l~~~TnG  230 (307)
                      ++..+.+.||++|||+++.++..+|+++|||+|+||||+||+++||||+ ++|+|++|+| +||++|||+||+||+||||
T Consensus       200 ~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~-~~g~Wi~V~p-~pgalVVNiGD~L~~~TNG  277 (361)
T PLN02276        200 FFEDGDSIMRCNYYPPCQEPELTLGTGPHCDPTSLTILHQDQVGGLQVF-VDNKWRSVRP-RPGALVVNIGDTFMALSNG  277 (361)
T ss_pred             HhcCccceeeeEeCCCCCCcccccCCccccCCceeEEEEecCCCceEEE-ECCEEEEcCC-CCCeEEEEcHHHHHHHhCC
Confidence            8888889999999999988888899999999999999999999999997 7899999999 9999999999999999999


Q ss_pred             cccCCCceeecCCCCceEEEEeecCCCCCceeeCCCccCCCCCCCCCCCcCHHHHHHHHHHh--hcccchhhhhhhh
Q 038676          231 QLYSPYHRVMMTGIETRYSTGFFSIPKAGYKIEAPEELVDEEHPLLFKPFDHFEFLEFYYTE--AGQRAESALKTYC  305 (307)
Q Consensus       231 ~~ks~~HRV~~~~~~~R~Si~~F~~P~~d~~i~p~~~~~~~~~p~~y~~~~~~e~~~~~~~~--~~~~~~~~~~~~~  305 (307)
                      +|||++|||+.++..+||||+||++|+.|++|.|+++++++++|++|++++|+||++.+.+.  .+.+.++.+++|.
T Consensus       278 ~~kSt~HRVv~~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~~~p~~y~~~~~~ey~~~~~~~~~~~~~~l~~~~~~~  354 (361)
T PLN02276        278 RYKSCLHRAVVNSERERRSLAFFLCPKEDKVVRPPQELVDREGPRKYPDFTWSDLLEFTQKHYRADMNTLQAFSNWL  354 (361)
T ss_pred             ccccccceeecCCCCCEEEEEEEecCCCCCEEeCChHhcCCCCCCcCCCCCHHHHHHHHHHhcccchhHHHHHHHHH
Confidence            99999999998888899999999999999999999999999999999999999999988873  4566667777654

>PLN02216 protein SRG1 Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query307
1w9y_A319 The Structure Of Acc Oxidase Length = 319 2e-13
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 6e-12
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 6e-12
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-10
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 3e-10
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 1e-07
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 7e-04
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure 
Iteration: 1

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 138/306 (45%), Gaps = 20/306 (6%)
Query: 1   LPIIDFSKPNLKPGTPEWDSVKSHVRKALEDYGCFEALFNKVPEEILKAVFGALEELFDL 60
            PII   K N      E  +    ++ A E++G FE + + +P E+   V    +  +  
Sbjct: 4   FPIISLDKVN----GVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKK 59
Query: 61  PLRTKMRN-ISKKPFHGYVGQYPQVPLYESMGIDDANVKEKVESMTNIL-WPEGNKSFCK 118
               + +  ++ K   G   +        +  +       K   ++NI   P+ ++ + +
Sbjct: 60  CXEQRFKELVASKALEGVQAEVTDXDWESTFFL-------KHLPISNISEVPDLDEEYRE 112
Query: 119 TIQSFSEQVSELDQTIRRMILESLGLEK-YMDEHMNST---SYLLRVMKYKGPETTEKKL 174
             + F++++ +L + +  ++ E+LGLEK Y+      +   ++  +V  Y      +   
Sbjct: 113 VXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIK 172
Query: 175 GLNAHTDKNIVTILYQN-QVEGLELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLY 233
           GL AHTD   + +L+Q+ +V GL+L  K+G+WI+V P   HS +  +GD L   TNG+  
Sbjct: 173 GLRAHTDAGGIILLFQDDKVSGLQL-LKDGQWIDVPPXR-HSIVVNLGDQLEVITNGKYK 230
Query: 234 SPYHRVMMTGIETRYSTGFFSIPKAGYKIEAPEELVDEEHPLLFKPFDHFEFLEFYYTEA 293
           S  HRV+      R S   F  P +   I     LV++E     + +  F F ++    A
Sbjct: 231 SVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYA 290
Query: 294 GQRAES 299
           G + ++
Sbjct: 291 GLKFQA 296
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query307
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 7e-52
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 3e-51
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 1e-49
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 1e-45
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 2e-43
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 2e-42
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  173 bits (440), Expect = 7e-52
 Identities = 73/315 (23%), Positives = 125/315 (39%), Gaps = 44/315 (13%)

Query: 1   LPIIDFSKPNLKPGTPEWDSVKSHVRKALEDYGCFEALFNKVPEEILKAVFGALEELFDL 60
           +P ID             ++    ++KA  D+G    + + +P ++++ V  A EE F L
Sbjct: 47  VPTIDLKNIE-SDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 105

Query: 61  PLRTKMR---NISKKPFHGYVGQYPQVPLYESMGIDDANVKEKV-------------ESM 104
            +  K +   + +     GY             G   AN                  E  
Sbjct: 106 SVEEKEKYANDQATGKIQGY-------------GSKLANNASGQLEWEDYFFHLAYPEEK 152

Query: 105 TNI-LWPEGNKSFCKTIQSFSEQVSELDQTIRRMILESLGLEK-YMDEHMNSTSYLLRVM 162
            ++ +WP+    + +    +++ +  L   + + +   LGLE   +++ +     LL  M
Sbjct: 153 RDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQM 212

Query: 163 K---Y---KGPETTEKKLGLNAHTDKNIVTILYQNQVEGLELQTKNGEWINVKPSSPHSF 216
           K   Y     PE     LG+ AHTD + +T +  N V GL+L    G+W+  K   P S 
Sbjct: 213 KINYYPKCPQPELA---LGVEAHTDVSALTFILHNMVPGLQLF-YEGKWVTAKC-VPDSI 267

Query: 217 IAMIGDSLYAWTNGQLYSPYHRVMMTGIETRYSTGFFSIPKAGYKIEAP-EELVDEEHPL 275
           +  IGD+L   +NG+  S  HR ++   + R S   F  P     +  P  E+V  E P 
Sbjct: 268 VMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPA 327

Query: 276 LFKPFDHFEFLEFYY 290
            F P    + +E   
Sbjct: 328 KFPPRTFAQHIEHKL 342
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query307
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.25
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 94.86
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 94.38
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 87.45
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 86.9
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 85.56
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 84.6
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
Probab=100.00  E-value=2.3e-79  Score=558.93  Aligned_cols=289  Identities=22%  Similarity=0.337  Sum_probs=257.9

Q ss_pred             CCeeeCCCCCCCCCCccHHHHHHHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHhCCChHhhhhccCC-CCCCcccc
Q 038676            1 LPIIDFSKPNLKPGTPEWDSVKSHVRKALEDYGCFEALFNKVPEEILKAVFGALEELFDLPLRTKMRNISK-KPFHGYVG   79 (307)
Q Consensus         1 iPvIDls~~~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~~~~GY~~   79 (307)
                      ||||||+.+  .   .++++++++|.+||++||||||+|||||.++++++++.+++||+||.|+|+++... ..++||.+
T Consensus         7 iPvIDls~~--~---~~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy~~   81 (312)
T 3oox_A            7 IDPVSFSLY--A---KDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIP   81 (312)
T ss_dssp             SCCEETHHH--H---HCHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSSGGGTSEEEC
T ss_pred             CCeEEChHh--c---ccHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccCCCCcccccc
Confidence            799999974  1   24778999999999999999999999999999999999999999999999999864 46799986


Q ss_pred             cCC-------CCCceeeeccCCCCc--hhHHhhhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhh
Q 038676           80 QYP-------QVPLYESMGIDDANV--KEKVESMTNILWPEGNKSFCKTIQSFSEQVSELDQTIRRMILESLGLE-KYMD  149 (307)
Q Consensus        80 ~~~-------~~d~~E~~~~~~~~~--~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~~~  149 (307)
                      .+.       ..|++|.|.++....  ......+.+|.||+.+|+||+++++|+++|.+|+..||++|+++||++ ++|.
T Consensus        82 ~g~e~~~~~~~~D~kE~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~  161 (312)
T 3oox_A           82 FGVETAKGADHYDLKEFWHMGRDLPPGHRFRAHMADNVWPAEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLERDFFK  161 (312)
T ss_dssp             CCCCCSTTSCSCCCCEEEEECCCCCTTCGGGGTSCCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTH
T ss_pred             ccceecCCCCCCCceeeeEeecCCCcCCcchhccCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHH
Confidence            553       248899998864321  122234567899999999999999999999999999999999999999 7898


Q ss_pred             hhccCcccceeeeeecCCCCcccccccccccCCCceEEEeeCCCCceeEEccCCceEEcCCCCCCeEEEEchhHHHHHhc
Q 038676          150 EHMNSTSYLLRVMKYKGPETTEKKLGLNAHTDKNIVTILYQNQVEGLELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTN  229 (307)
Q Consensus       150 ~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lTlL~qd~~~GLqv~~~~g~W~~v~p~~~g~~vVnvGd~l~~~Tn  229 (307)
                      +.+..+.+.||++||||++.++..+|+++|||+|+||||+||+++||||++++|+|++|+| +||++|||+||+||+|||
T Consensus       162 ~~~~~~~~~lr~~~Ypp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLqV~~~~g~W~~V~p-~pg~~vVNiGD~l~~~Tn  240 (312)
T 3oox_A          162 PTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINP-PPGCLVINIGDMLERLTN  240 (312)
T ss_dssp             HHHTTCCCEEEEEEECCCSSCCC--CEEEECCCSSEEEEECCTTSCEEEECTTSCEEECCC-CSSCEEEEECHHHHHHTT
T ss_pred             HHhcCCcceeeeEecCCCCCCcCCcCccceecCceEEEEeEcCcCceEEECCCCcEEECCC-CCCeEEEEhHHHHHHHhC
Confidence            8888888999999999998754459999999999999999999999999999999999999 999999999999999999


Q ss_pred             CcccCCCceeecCC----CCceEEEEeecCCCCCceeeCCCccCCCCCCCCCC-CcCHHHHHHHHHHhhcc
Q 038676          230 GQLYSPYHRVMMTG----IETRYSTGFFSIPKAGYKIEAPEELVDEEHPLLFK-PFDHFEFLEFYYTEAGQ  295 (307)
Q Consensus       230 G~~ks~~HRV~~~~----~~~R~Si~~F~~P~~d~~i~p~~~~~~~~~p~~y~-~~~~~e~~~~~~~~~~~  295 (307)
                      |+||||.|||+.++    ..+|||++||++|+.|++|.|+++++++++|++|+ +||++||+..+++++|+
T Consensus       241 G~~kS~~HRVv~~~~~~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~~~p~~y~~~~t~~eyl~~r~~~~~l  311 (312)
T 3oox_A          241 NVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQRLREIKL  311 (312)
T ss_dssp             TSSCCCCEEECCCCGGGTTSCEEECCEEECCCTTCEECCCGGGCCSSSCCSCSSCEEHHHHHHHHHHHHC-
T ss_pred             CeecCCCceEeCCCccCCCCCEEEEEEEecCCCCcEEecCccccCCCCcccCCCCeeHHHHHHHHHHHhcc
Confidence            99999999998764    46799999999999999999999999999999999 99999999999998765
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 307
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 4e-45
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 3e-44
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 3e-34
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 6e-23
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

 Score =  153 bits (387), Expect = 4e-45
 Identities = 66/311 (21%), Positives = 130/311 (41%), Gaps = 19/311 (6%)

Query: 1   LPIIDFSKPNLKPGTPEWDSVKSHVRKALEDYGCFEALFNKVPEEILKAVFGALEELFDL 60
            PII   K N      E  +    ++ A E++G FE + + +P E++  V    +  +  
Sbjct: 3   FPIISLDKVN----GVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKK 58

Query: 61  PLRTKMRN-ISKKPFHGYVGQYPQVPLYESMGIDDANVKEKVESMTNILWPEGNKSFCKT 119
            +  + +  ++ K   G   +   +    +  +    +            P+ ++ + + 
Sbjct: 59  CMEQRFKELVASKALEGVQAEVTDMDWESTFFLKHLPI------SNISEVPDLDEEYREV 112

Query: 120 IQSFSEQVSELDQTIRRMILESLGLEKY----MDEHMNSTSYLLRVMKYKGPETTEKKLG 175
           ++ F++++ +L + +  ++ E+LGLEK             ++  +V  Y      +   G
Sbjct: 113 MRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKG 172

Query: 176 LNAHTDKNIVTILYQNQVEGLELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLYSP 235
           L AHTD   + +L+Q+         K+G+WI+V P   HS +  +GD L   TNG+  S 
Sbjct: 173 LRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDV-PPMRHSIVVNLGDQLEVITNGKYKSV 231

Query: 236 YHRVMMTGIETRYSTGFFSIPKAGYKIEAPEELVD---EEHPLLFKPFDHFEFLEFYYTE 292
            HRV+      R S   F  P +   I     LV+   EE+  ++  F   ++++ Y   
Sbjct: 232 MHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGL 291

Query: 293 AGQRAESALKT 303
             Q  E   + 
Sbjct: 292 KFQAKEPRFEA 302
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query307
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 92.27
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

Probab=100.00  E-value=6e-74  Score=520.77  Aligned_cols=281  Identities=24%  Similarity=0.431  Sum_probs=245.7

Q ss_pred             CCeeeCCCCCCCCCCccHHHHHHHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHhCCChHhhhhccCC-CCCCcccc
Q 038676            1 LPIIDFSKPNLKPGTPEWDSVKSHVRKALEDYGCFEALFNKVPEEILKAVFGALEELFDLPLRTKMRNISK-KPFHGYVG   79 (307)
Q Consensus         1 iPvIDls~~~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~~~~GY~~   79 (307)
                      ||||||+.+  +  ..+|++++++|.+||+++|||||+|||||.++++++++++++||++|.|+|+++... ..++||.+
T Consensus         3 lPvIDl~~~--~--~~~r~~~~~~l~~A~~~~GFF~l~nHGI~~~li~~~~~~~~~fF~lp~e~K~k~~~~~~~~~g~~~   78 (307)
T d1w9ya1           3 FPIISLDKV--N--GVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVASKALEGVQA   78 (307)
T ss_dssp             CCEEEGGGG--G--STTHHHHHHHHHHHHHHTSEEEEESCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCeEECccc--C--CcCHHHHHHHHHHHHHcCeEEEEEcCCCCHHHHHHHHHHHHHHHhCcHHHhhhhhcCCCCCcCccc
Confidence            799999984  2  245788999999999999999999999999999999999999999999999997643 35677776


Q ss_pred             cCCCCCceeeeccCCCCchhHHhhhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhhhhc---cCc
Q 038676           80 QYPQVPLYESMGIDDANVKEKVESMTNILWPEGNKSFCKTIQSFSEQVSELDQTIRRMILESLGLE-KYMDEHM---NST  155 (307)
Q Consensus        80 ~~~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~~~~~~---~~~  155 (307)
                      .....|++|.|.+.....      ...+.||+.+++|++.+++|++.|.+|+.+|+++|+++||++ ++|.+.+   ..+
T Consensus        79 ~~~~~d~~e~~~~~~~~~------~~~~~~~~~~~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~~~~~  152 (307)
T d1w9ya1          79 EVTDMDWESTFFLKHLPI------SNISEVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGP  152 (307)
T ss_dssp             CGGGCCCCEEEEEEEESC------CGGGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHTTTCC
T ss_pred             cccccChhhhcccccccc------cCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHhhhhccccc
Confidence            655678899987653221      123568999999999999999999999999999999999999 7786654   345


Q ss_pred             ccceeeeeecCCCCcccccccccccCCCceEEEeeC-CCCceeEEccCCceEEcCCCCCCeEEEEchhHHHHHhcCcccC
Q 038676          156 SYLLRVMKYKGPETTEKKLGLNAHTDKNIVTILYQN-QVEGLELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLYS  234 (307)
Q Consensus       156 ~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lTlL~qd-~~~GLqv~~~~g~W~~v~p~~~g~~vVnvGd~l~~~TnG~~ks  234 (307)
                      .+.+|++||||++.++...|+++|||+|+||||+|+ .++|||| .++|+|++|+| .||++|||+||+||+||||+|||
T Consensus       153 ~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~q~~~~ggl~~-~~~g~Wi~v~p-~~~~~vVnvGD~l~~~Tng~~kS  230 (307)
T d1w9ya1         153 NFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQL-LKDGQWIDVPP-MRHSIVVNLGDQLEVITNGKYKS  230 (307)
T ss_dssp             EEEEEEEECCCCSCGGGGSSCCCBCCSSSEEEEEESSSCCCEEE-EETTEEEECCC-CTTCEEEEECHHHHHHTTTSSCC
T ss_pred             cccceecCCCCCcccccccccccccccceeEEeeccCCCCeEEE-ecCCcEEEecc-CCCeEEEEcchhhHHhhCCcccC
Confidence            778999999999988888999999999999999996 4799999 57899999999 99999999999999999999999


Q ss_pred             CCceeecCCCCceEEEEeecCCCCCceeeCCCccCC---CCCCCCCCCcCHHHHHHHHHHhh
Q 038676          235 PYHRVMMTGIETRYSTGFFSIPKAGYKIEAPEELVD---EEHPLLFKPFDHFEFLEFYYTEA  293 (307)
Q Consensus       235 ~~HRV~~~~~~~R~Si~~F~~P~~d~~i~p~~~~~~---~~~p~~y~~~~~~e~~~~~~~~~  293 (307)
                      |.|||+.+++.+||||+||++|+.|++|.|++++++   +++|++|+|||++||++.+++..
T Consensus       231 t~HRVv~~~~~~R~Si~~F~~p~~d~~i~p~~~~v~~~~~~~p~~y~~~t~~ey~~~~~~~~  292 (307)
T d1w9ya1         231 VMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLK  292 (307)
T ss_dssp             CCEEECCCSSSCCEEEEEEEECCTTCEECCCGGGC--------CCCCCEEHHHHHHTTTTTT
T ss_pred             cCceeecCCCCCcEEEEEEeeCCCCCEEeCCHHHhcccCccCCCCCCCeeHHHHHHHHHhcc
Confidence            999999988889999999999999999999999986   56799999999999999888743
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure